Query psy3045
Match_columns 267
No_of_seqs 189 out of 1492
Neff 11.5
Searched_HMMs 46136
Date Sat Aug 17 00:18:04 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3045.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/3045hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3513|consensus 100.0 7.3E-30 1.6E-34 216.1 24.3 219 9-266 236-471 (1051)
2 KOG3513|consensus 100.0 4E-29 8.6E-34 211.7 24.8 220 11-265 329-562 (1051)
3 KOG4194|consensus 100.0 3.1E-29 6.6E-34 199.3 16.9 218 13-265 503-751 (873)
4 KOG4221|consensus 99.9 3.9E-26 8.4E-31 193.6 21.0 220 13-266 140-373 (1381)
5 PHA02785 IL-beta-binding prote 99.9 7.5E-25 1.6E-29 171.7 23.7 205 23-264 34-266 (326)
6 KOG4222|consensus 99.9 1.7E-23 3.6E-28 176.9 14.8 212 13-261 131-355 (1281)
7 KOG4221|consensus 99.9 6E-21 1.3E-25 162.6 19.9 217 12-265 40-281 (1381)
8 PHA02826 IL-1 receptor-like pr 99.9 9.5E-21 2.1E-25 140.0 17.3 148 23-205 30-212 (227)
9 KOG4222|consensus 99.9 4.9E-21 1.1E-25 162.2 11.7 222 8-265 220-464 (1281)
10 KOG4194|consensus 99.9 4.8E-20 1E-24 147.5 16.5 176 6-215 605-795 (873)
11 PHA02785 IL-beta-binding prote 99.8 1E-17 2.2E-22 131.7 18.5 148 23-205 129-316 (326)
12 PHA02826 IL-1 receptor-like pr 99.7 8.1E-16 1.7E-20 113.9 14.2 115 143-266 31-179 (227)
13 cd05762 Ig8_MLCK Eighth immuno 99.7 8E-16 1.7E-20 99.2 10.5 82 141-222 7-97 (98)
14 cd05851 Ig3_Contactin-1 Third 99.7 2.1E-15 4.6E-20 95.3 11.2 76 140-215 7-87 (88)
15 cd05762 Ig8_MLCK Eighth immuno 99.6 4.4E-15 9.6E-20 95.7 9.5 86 14-107 1-95 (98)
16 cd05863 Ig2_VEGFR-3 Second imm 99.6 3E-15 6.6E-20 88.6 8.0 65 152-216 1-66 (67)
17 cd04975 Ig4_SCFR_like Fourth i 99.6 6.4E-15 1.4E-19 95.1 9.5 74 143-216 12-100 (101)
18 cd05851 Ig3_Contactin-1 Third 99.6 9.3E-15 2E-19 92.4 9.5 82 13-102 1-87 (88)
19 cd05771 IgC_Tapasin_R Tapasin- 99.6 4.8E-14 1E-18 97.4 12.4 108 69-205 2-132 (139)
20 cd05745 Ig3_Peroxidasin Third 99.6 9E-15 2E-19 89.5 7.8 68 148-215 1-74 (74)
21 cd04968 Ig3_Contactin_like Thi 99.6 3.5E-14 7.6E-19 90.1 10.8 75 141-215 8-87 (88)
22 cd05859 Ig4_PDGFR-alpha Fourth 99.6 1.5E-14 3.3E-19 93.5 9.0 73 144-216 13-100 (101)
23 cd05894 Ig_C5_MyBP-C C5 immuno 99.6 2.5E-14 5.5E-19 89.9 9.4 70 145-214 6-85 (86)
24 cd05735 Ig8_DSCAM Eight immuno 99.6 3.5E-14 7.5E-19 89.7 9.8 71 149-219 1-85 (88)
25 cd05730 Ig3_NCAM-1_like Third 99.6 5.7E-14 1.2E-18 90.5 10.8 74 143-216 12-93 (95)
26 cd05852 Ig5_Contactin-1 Fifth 99.6 2.1E-14 4.5E-19 87.2 8.2 67 149-215 1-73 (73)
27 cd05737 Ig_Myomesin_like_C C-t 99.6 3.7E-14 8.1E-19 90.6 9.5 73 142-214 9-91 (92)
28 cd05867 Ig4_L1-CAM_like Fourth 99.6 3.7E-14 8.1E-19 87.2 9.0 67 149-215 1-75 (76)
29 cd05728 Ig4_Contactin-2-like F 99.6 2.8E-14 6.1E-19 89.7 8.6 75 140-214 5-84 (85)
30 cd05747 Ig5_Titin_like M5, fif 99.6 7.5E-14 1.6E-18 89.3 10.2 77 137-213 6-91 (92)
31 cd05892 Ig_Myotilin_C C-termin 99.5 3.3E-14 7.1E-19 86.6 7.7 64 152-215 1-75 (75)
32 cd04972 Ig_TrkABC_d4 Fourth do 99.5 8.4E-14 1.8E-18 88.7 9.6 73 142-214 8-89 (90)
33 cd05865 Ig1_NCAM-1 First immun 99.5 1E-13 2.2E-18 88.7 9.8 75 141-215 7-95 (96)
34 cd05868 Ig4_NrCAM Fourth immun 99.5 7.1E-14 1.5E-18 85.8 8.5 67 149-215 1-75 (76)
35 cd05857 Ig2_FGFR Second immuno 99.5 1.1E-13 2.5E-18 87.2 9.5 71 145-215 5-85 (85)
36 cd05730 Ig3_NCAM-1_like Third 99.5 1E-13 2.2E-18 89.3 9.2 87 13-104 1-94 (95)
37 cd05864 Ig2_VEGFR-2 Second imm 99.5 6.3E-14 1.4E-18 84.0 7.5 65 152-216 1-69 (70)
38 cd05869 Ig5_NCAM-1 Fifth immun 99.5 1.8E-13 3.9E-18 88.4 9.8 71 145-215 13-97 (97)
39 cd05893 Ig_Palladin_C C-termin 99.5 7.1E-14 1.5E-18 85.2 7.2 64 152-215 1-75 (75)
40 cd05870 Ig5_NCAM-2 Fifth immun 99.5 3E-13 6.6E-18 87.5 10.5 87 13-102 2-98 (98)
41 cd04976 Ig2_VEGFR Second immun 99.5 1.1E-13 2.4E-18 83.7 7.9 65 152-216 1-70 (71)
42 cd04978 Ig4_L1-NrCAM_like Four 99.5 1.5E-13 3.3E-18 84.7 8.7 67 149-215 1-75 (76)
43 cd05723 Ig4_Neogenin Fourth im 99.5 1.5E-13 3.3E-18 83.2 8.1 65 151-215 1-71 (71)
44 KOG3515|consensus 99.5 1.3E-13 2.7E-18 115.4 10.0 215 12-264 6-250 (741)
45 cd04969 Ig5_Contactin_like Fif 99.5 1.7E-13 3.8E-18 83.5 8.2 67 149-215 1-73 (73)
46 cd04968 Ig3_Contactin_like Thi 99.5 3.5E-13 7.6E-18 85.4 9.9 82 13-102 1-87 (88)
47 cd05870 Ig5_NCAM-2 Fifth immun 99.5 2.8E-13 6E-18 87.7 9.1 74 141-214 8-97 (98)
48 cd05747 Ig5_Titin_like M5, fif 99.5 2.5E-13 5.5E-18 86.8 8.7 81 12-100 2-91 (92)
49 cd04973 Ig1_FGFR First immunog 99.5 5.8E-13 1.3E-17 82.4 10.0 70 144-214 4-78 (79)
50 cd05891 Ig_M-protein_C C-termi 99.5 3.3E-13 7.2E-18 86.0 9.1 74 141-214 8-91 (92)
51 cd05876 Ig3_L1-CAM Third immun 99.5 2.7E-13 5.9E-18 82.1 8.3 64 152-215 1-70 (71)
52 cd05854 Ig6_Contactin-2 Sixth 99.5 4.3E-13 9.4E-18 84.1 9.4 68 150-217 1-83 (85)
53 cd05728 Ig4_Contactin-2-like F 99.5 4E-13 8.7E-18 84.5 9.1 79 16-102 2-85 (85)
54 cd05740 Ig_CEACAM_D4 Fourth im 99.5 6.9E-13 1.5E-17 84.2 10.1 73 141-214 10-89 (91)
55 cd05740 Ig_CEACAM_D4 Fourth im 99.5 3.1E-13 6.6E-18 85.8 8.4 83 13-102 1-90 (91)
56 cd05732 Ig5_NCAM-1_like Fifth 99.5 7.5E-13 1.6E-17 85.5 10.4 73 142-214 9-95 (96)
57 cd05749 Ig2_Tyro3_like Second 99.5 6.3E-13 1.4E-17 82.1 9.2 67 141-209 5-75 (81)
58 PF07679 I-set: Immunoglobulin 99.5 2.7E-13 5.8E-18 86.5 7.8 85 14-102 1-90 (90)
59 cd05760 Ig2_PTK7 Second immuno 99.5 3.6E-13 7.9E-18 82.9 7.9 64 152-215 1-72 (77)
60 cd05748 Ig_Titin_like Immunogl 99.5 5.5E-13 1.2E-17 81.6 8.5 65 151-215 1-74 (74)
61 cd05744 Ig_Myotilin_C_like Imm 99.5 5.2E-13 1.1E-17 81.7 8.3 64 152-215 1-75 (75)
62 cd05725 Ig3_Robo Third immunog 99.5 6E-13 1.3E-17 80.2 8.3 63 152-214 1-68 (69)
63 cd05856 Ig2_FGFRL1-like Second 99.5 5.4E-13 1.2E-17 83.6 8.4 70 145-214 5-81 (82)
64 PF07679 I-set: Immunoglobulin 99.5 2.6E-13 5.5E-18 86.6 6.9 75 141-215 7-90 (90)
65 cd05746 Ig4_Peroxidasin Fourth 99.5 4.1E-13 8.9E-18 80.9 7.1 62 152-213 1-68 (69)
66 cd04973 Ig1_FGFR First immunog 99.4 1.1E-12 2.4E-17 81.1 9.1 74 23-102 2-79 (79)
67 cd04971 Ig_TrKABC_d5 Fifth dom 99.4 6.7E-13 1.4E-17 82.2 7.7 62 153-214 2-79 (81)
68 cd07693 Ig1_Robo First immunog 99.4 1.2E-12 2.6E-17 85.3 9.3 88 13-102 1-99 (100)
69 cd07693 Ig1_Robo First immunog 99.4 1.4E-12 2.9E-17 85.0 9.6 77 139-215 6-99 (100)
70 cd05739 Ig3_RPTP_IIa_LAR_like 99.4 1.3E-12 2.8E-17 78.4 8.6 63 149-213 1-68 (69)
71 cd05869 Ig5_NCAM-1 Fifth immun 99.4 1.8E-12 4E-17 83.6 9.9 87 13-102 2-97 (97)
72 cd05855 Ig_TrkB_d5 Fifth domai 99.4 9.6E-13 2.1E-17 80.4 7.9 61 154-214 3-77 (79)
73 cd05743 Ig_Perlecan_D2_like Im 99.4 7.3E-13 1.6E-17 81.8 7.5 67 149-215 1-76 (78)
74 cd04970 Ig6_Contactin_like Six 99.4 1.5E-12 3.1E-17 82.0 9.0 68 150-217 1-83 (85)
75 cd05894 Ig_C5_MyBP-C C5 immuno 99.4 1.1E-12 2.3E-17 82.5 8.2 75 23-102 3-86 (86)
76 cd05724 Ig2_Robo Second immuno 99.4 2.5E-12 5.4E-17 81.3 10.0 69 141-209 3-79 (86)
77 cd05773 Ig8_hNephrin_like Eigh 99.4 3.6E-12 7.8E-17 83.9 10.9 69 148-216 22-105 (109)
78 cd07702 Ig2_VEGFR-1 Second imm 99.4 9.3E-13 2E-17 79.1 7.3 64 152-215 1-70 (72)
79 cd05756 Ig1_IL1R_like First im 99.4 2.2E-12 4.7E-17 82.3 9.3 72 143-214 8-93 (94)
80 cd05731 Ig3_L1-CAM_like Third 99.4 1.1E-12 2.3E-17 79.7 7.4 64 152-215 1-70 (71)
81 cd05853 Ig6_Contactin-4 Sixth 99.4 1.9E-12 4.1E-17 80.4 8.5 68 150-217 1-83 (85)
82 cd05732 Ig5_NCAM-1_like Fifth 99.4 3.9E-12 8.4E-17 82.1 9.9 86 13-102 2-96 (96)
83 cd05763 Ig_1 Subgroup of the i 99.4 2.7E-12 5.9E-17 78.7 8.7 64 152-215 1-74 (75)
84 cd05726 Ig4_Robo Fhird immunog 99.4 2.3E-12 5E-17 82.0 8.5 69 149-217 1-83 (90)
85 cd04974 Ig3_FGFR Third immunog 99.4 2.3E-12 4.9E-17 81.9 8.4 67 149-215 1-89 (90)
86 cd05752 Ig1_FcgammaR_like Frst 99.4 1.9E-12 4.1E-17 79.5 7.6 62 140-203 6-68 (78)
87 cd05722 Ig1_Neogenin First imm 99.4 4.4E-12 9.5E-17 81.6 9.6 68 141-208 6-87 (95)
88 cd04975 Ig4_SCFR_like Fourth i 99.4 3.6E-12 7.9E-17 82.3 9.1 77 23-103 11-100 (101)
89 cd05858 Ig3_FGFR-2 Third immun 99.4 2.4E-12 5.2E-17 81.9 8.2 67 149-215 1-89 (90)
90 cd05764 Ig_2 Subgroup of the i 99.4 2.9E-12 6.3E-17 78.4 8.1 66 149-214 1-73 (74)
91 cd05735 Ig8_DSCAM Eight immuno 99.4 6.8E-12 1.5E-16 79.2 10.0 73 30-107 1-86 (88)
92 cd05854 Ig6_Contactin-2 Sixth 99.4 4.6E-12 9.9E-17 79.4 9.1 73 31-106 1-85 (85)
93 cd05737 Ig_Myomesin_like_C C-t 99.4 2.8E-12 6.1E-17 81.9 8.1 74 23-102 9-92 (92)
94 cd05745 Ig3_Peroxidasin Third 99.4 3E-12 6.6E-17 78.2 7.8 68 29-102 1-74 (74)
95 cd05866 Ig1_NCAM-2 First immun 99.4 3.8E-12 8.3E-17 80.7 8.4 72 141-213 7-89 (92)
96 cd05848 Ig1_Contactin-5 First 99.4 6.2E-12 1.3E-16 80.5 9.3 62 148-209 18-87 (94)
97 cd05758 Ig5_KIRREL3-like Fifth 99.4 1E-11 2.2E-16 80.3 10.3 72 142-213 9-97 (98)
98 cd05852 Ig5_Contactin-1 Fifth 99.4 3.9E-12 8.4E-17 77.2 7.6 67 30-102 1-73 (73)
99 cd05866 Ig1_NCAM-2 First immun 99.4 4.1E-12 8.8E-17 80.5 7.8 75 23-102 8-91 (92)
100 cd05850 Ig1_Contactin-2 First 99.4 1.3E-11 2.8E-16 79.0 10.2 61 149-209 19-87 (94)
101 cd04977 Ig1_NCAM-1_like First 99.4 5.6E-12 1.2E-16 80.4 8.3 73 141-214 7-91 (92)
102 cd05865 Ig1_NCAM-1 First immun 99.4 3.9E-12 8.4E-17 81.4 7.5 76 23-102 8-95 (96)
103 cd05752 Ig1_FcgammaR_like Frst 99.4 2.5E-12 5.4E-17 79.0 6.3 71 14-101 1-77 (78)
104 cd04972 Ig_TrkABC_d4 Fourth do 99.4 9.4E-12 2E-16 79.2 8.9 78 23-102 8-90 (90)
105 cd05765 Ig_3 Subgroup of the i 99.4 5.6E-12 1.2E-16 78.7 7.7 67 149-215 1-81 (81)
106 cd05738 Ig2_RPTP_IIa_LAR_like 99.3 6.7E-12 1.4E-16 76.6 7.8 64 152-215 1-73 (74)
107 cd05736 Ig2_Follistatin_like S 99.3 1.1E-11 2.3E-16 76.3 8.7 64 153-216 2-74 (76)
108 cd05849 Ig1_Contactin-1 First 99.3 1.1E-11 2.4E-16 79.0 8.8 61 149-209 19-86 (93)
109 cd05750 Ig_Pro_neuregulin Immu 99.3 7E-12 1.5E-16 77.0 7.7 61 152-212 1-74 (75)
110 cd05867 Ig4_L1-CAM_like Fourth 99.3 1.6E-11 3.4E-16 75.4 9.2 70 30-102 1-75 (76)
111 cd05853 Ig6_Contactin-4 Sixth 99.3 8.2E-12 1.8E-16 77.5 7.9 73 31-106 1-85 (85)
112 cd04977 Ig1_NCAM-1_like First 99.3 7.2E-12 1.6E-16 79.9 7.5 74 23-101 8-91 (92)
113 cd05756 Ig1_IL1R_like First im 99.3 1.1E-11 2.3E-16 79.2 8.2 78 23-102 7-94 (94)
114 cd05850 Ig1_Contactin-2 First 99.3 2.9E-11 6.4E-16 77.4 10.0 81 14-100 2-92 (94)
115 cd05771 IgC_Tapasin_R Tapasin- 99.3 1.9E-11 4.1E-16 84.5 9.8 78 181-261 1-80 (139)
116 cd05754 Ig3_Perlecan_like Thir 99.3 2.9E-11 6.3E-16 76.1 9.7 73 141-213 8-84 (85)
117 cd05773 Ig8_hNephrin_like Eigh 99.3 2.4E-11 5.2E-16 80.0 9.3 89 13-106 4-108 (109)
118 cd05891 Ig_M-protein_C C-termi 99.3 1.3E-11 2.7E-16 78.7 7.7 74 23-102 9-92 (92)
119 cd05871 Ig_Semaphorin_classIII 99.3 4.7E-11 1E-15 75.7 10.2 81 23-103 4-89 (91)
120 cd05742 Ig1_VEGFR_like First i 99.3 1.6E-11 3.4E-16 77.1 7.8 67 149-215 1-83 (84)
121 cd05857 Ig2_FGFR Second immuno 99.3 2E-11 4.3E-16 76.9 8.2 77 24-102 3-85 (85)
122 cd04978 Ig4_L1-NrCAM_like Four 99.3 1.9E-11 4.2E-16 75.2 7.7 70 30-102 1-75 (76)
123 cd05848 Ig1_Contactin-5 First 99.3 3E-11 6.5E-16 77.3 8.8 75 14-94 2-85 (94)
124 cd05726 Ig4_Robo Fhird immunog 99.3 4.3E-11 9.3E-16 76.1 9.5 76 30-105 1-84 (90)
125 cd05896 Ig1_IL1RAPL-1_like Fir 99.3 3.8E-11 8.2E-16 76.2 8.9 80 23-102 8-104 (104)
126 cd05849 Ig1_Contactin-1 First 99.3 3.2E-11 6.9E-16 76.9 8.5 81 13-100 1-91 (93)
127 cd05859 Ig4_PDGFR-alpha Fourth 99.3 2.6E-11 5.6E-16 78.4 8.1 80 24-103 12-100 (101)
128 cd04974 Ig3_FGFR Third immunog 99.3 4E-11 8.6E-16 76.2 8.8 73 30-102 1-89 (90)
129 cd05863 Ig2_VEGFR-3 Second imm 99.3 1.4E-11 3E-16 73.0 6.1 61 33-103 1-66 (67)
130 cd04969 Ig5_Contactin_like Fif 99.3 2.6E-11 5.7E-16 73.9 7.6 67 30-102 1-73 (73)
131 cd05724 Ig2_Robo Second immuno 99.3 4.2E-11 9.1E-16 75.6 8.8 74 23-101 4-85 (86)
132 cd04970 Ig6_Contactin_like Six 99.3 2.7E-11 5.8E-16 76.2 7.7 76 31-106 1-85 (85)
133 cd05733 Ig6_L1-CAM_like Sixth 99.3 2.4E-11 5.3E-16 74.7 7.3 58 152-209 1-71 (77)
134 cd05873 Ig_Sema4D_like Immunog 99.3 7.7E-11 1.7E-15 73.4 9.2 63 141-204 3-71 (87)
135 cd04979 Ig_Semaphorin_C Immuno 99.3 7E-11 1.5E-15 75.0 9.1 79 23-103 4-87 (89)
136 cd05893 Ig_Palladin_C C-termin 99.3 1.3E-11 2.9E-16 75.2 5.3 65 33-102 1-75 (75)
137 cd05892 Ig_Myotilin_C C-termin 99.3 5.3E-11 1.2E-15 72.4 8.0 65 33-102 1-75 (75)
138 cd05895 Ig_Pro_neuregulin-1 Im 99.3 4.5E-11 9.7E-16 73.5 7.8 61 152-212 1-75 (76)
139 cd04976 Ig2_VEGFR Second immun 99.3 3.9E-11 8.4E-16 72.5 7.3 65 33-103 1-70 (71)
140 cd05874 Ig6_NrCAM Sixth immuno 99.2 4.8E-11 1E-15 73.3 7.6 58 152-209 1-71 (77)
141 cd05765 Ig_3 Subgroup of the i 99.2 5.9E-11 1.3E-15 74.0 8.2 73 30-102 1-81 (81)
142 PHA03376 BARF1; Provisional 99.2 1.2E-10 2.5E-15 80.7 10.0 122 23-173 19-163 (221)
143 cd05753 Ig2_FcgammaR_like Seco 99.2 5E-11 1.1E-15 74.3 7.6 62 145-206 10-73 (83)
144 cd05868 Ig4_NrCAM Fourth immun 99.2 8.9E-11 1.9E-15 72.0 8.6 70 30-102 1-75 (76)
145 cd05856 Ig2_FGFRL1-like Second 99.2 7.2E-11 1.6E-15 73.8 8.4 75 24-102 3-82 (82)
146 cd05861 Ig1_PDGFR-alphabeta Fr 99.2 1.3E-10 2.9E-15 72.6 9.4 67 149-215 1-82 (84)
147 cd05861 Ig1_PDGFR-alphabeta Fr 99.2 1E-10 2.2E-15 73.1 8.9 72 30-103 1-83 (84)
148 cd05729 Ig2_FGFR_like Second i 99.2 1.1E-10 2.3E-15 73.6 9.1 70 145-214 5-84 (85)
149 cd05758 Ig5_KIRREL3-like Fifth 99.2 1.1E-10 2.5E-15 75.4 9.2 81 13-100 2-97 (98)
150 cd05858 Ig3_FGFR-2 Third immun 99.2 1E-10 2.2E-15 74.4 8.7 73 30-102 1-89 (90)
151 cd05875 Ig6_hNeurofascin_like 99.2 7.5E-11 1.6E-15 72.4 7.8 59 152-210 1-72 (77)
152 cd05734 Ig7_DSCAM Seventh immu 99.2 7.9E-11 1.7E-15 72.9 8.0 57 152-208 1-71 (79)
153 cd05722 Ig1_Neogenin First imm 99.2 1E-10 2.2E-15 75.2 8.6 76 23-102 7-95 (95)
154 cd05723 Ig4_Neogenin Fourth im 99.2 1.1E-10 2.4E-15 70.6 8.2 65 32-102 1-71 (71)
155 cd05898 Ig5_KIRREL3 Fifth immu 99.2 3.2E-10 6.9E-15 72.3 10.6 74 140-213 7-97 (98)
156 cd04979 Ig_Semaphorin_C Immuno 99.2 2.2E-10 4.9E-15 72.6 9.9 73 142-215 4-86 (89)
157 cd05876 Ig3_L1-CAM Third immun 99.2 8.3E-11 1.8E-15 71.1 7.3 65 33-102 1-70 (71)
158 cd05764 Ig_2 Subgroup of the i 99.2 1.6E-10 3.5E-15 70.6 8.5 68 30-102 1-74 (74)
159 cd05744 Ig_Myotilin_C_like Imm 99.2 4.9E-11 1.1E-15 72.9 6.0 65 33-102 1-75 (75)
160 cd05725 Ig3_Robo Third immunog 99.2 1.2E-10 2.5E-15 70.2 7.6 63 33-102 1-69 (69)
161 cd05898 Ig5_KIRREL3 Fifth immu 99.2 3.2E-10 6.9E-15 72.3 9.6 81 13-100 2-97 (98)
162 cd05748 Ig_Titin_like Immunogl 99.2 1E-10 2.2E-15 71.5 7.1 65 32-102 1-74 (74)
163 cd04967 Ig1_Contactin First Ig 99.2 2.3E-10 4.9E-15 72.9 8.9 60 149-208 19-86 (91)
164 cd05754 Ig3_Perlecan_like Thir 99.2 1.3E-10 2.9E-15 73.1 7.7 70 23-100 9-84 (85)
165 cd05757 Ig2_IL1R_like Second i 99.2 1.9E-10 4.2E-15 72.9 8.4 71 145-215 6-86 (92)
166 cd05882 Ig1_Necl-1 First (N-te 99.2 2.6E-10 5.7E-15 72.7 9.0 77 23-100 5-93 (95)
167 cd05743 Ig_Perlecan_D2_like Im 99.2 1.1E-10 2.4E-15 72.0 6.7 66 30-101 1-75 (78)
168 cd05882 Ig1_Necl-1 First (N-te 99.2 3.4E-10 7.5E-15 72.2 9.1 61 142-202 5-83 (95)
169 cd05739 Ig3_RPTP_IIa_LAR_like 99.2 2.2E-10 4.7E-15 68.7 7.7 63 30-100 1-68 (69)
170 cd05749 Ig2_Tyro3_like Second 99.2 1.5E-10 3.3E-15 71.5 7.2 67 16-94 1-73 (81)
171 cd05763 Ig_1 Subgroup of the i 99.2 2.4E-10 5.1E-15 70.0 7.9 67 33-102 1-74 (75)
172 cd05742 Ig1_VEGFR_like First i 99.2 3.1E-10 6.8E-15 71.1 8.5 73 30-102 1-83 (84)
173 cd05873 Ig_Sema4D_like Immunog 99.2 4.2E-10 9E-15 70.2 8.7 63 23-90 4-70 (87)
174 cd05753 Ig2_FcgammaR_like Seco 99.2 6.7E-11 1.5E-15 73.7 5.2 69 23-101 7-82 (83)
175 cd05746 Ig4_Peroxidasin Fourth 99.1 1.9E-10 4.2E-15 69.1 6.3 62 33-100 1-68 (69)
176 cd05864 Ig2_VEGFR-2 Second imm 99.1 4.5E-10 9.8E-15 67.3 6.9 64 33-103 1-69 (70)
177 smart00408 IGc2 Immunoglobulin 99.1 6.6E-10 1.4E-14 65.4 7.6 58 148-205 1-63 (63)
178 cd05731 Ig3_L1-CAM_like Third 99.1 3.6E-10 7.7E-15 68.5 6.3 65 33-102 1-70 (71)
179 cd07701 Ig1_Necl-3 First (N-te 99.1 5.9E-10 1.3E-14 71.3 7.3 79 23-102 5-95 (95)
180 cd05862 Ig1_VEGFR First immuno 99.1 1E-09 2.3E-14 68.8 8.0 74 30-103 1-85 (86)
181 cd05757 Ig2_IL1R_like Second i 99.1 1.3E-09 2.7E-14 69.1 8.1 73 24-102 4-86 (92)
182 cd05736 Ig2_Follistatin_like S 99.1 9.8E-10 2.1E-14 67.5 7.5 67 33-103 1-74 (76)
183 cd05734 Ig7_DSCAM Seventh immu 99.1 8.7E-10 1.9E-14 68.2 7.3 70 33-102 1-79 (79)
184 cd07701 Ig1_Necl-3 First (N-te 99.1 2.6E-09 5.7E-14 68.3 9.5 71 142-213 5-93 (95)
185 cd05717 Ig1_Necl-1-3_like Firs 99.0 3.1E-09 6.8E-14 68.3 9.6 78 23-101 5-94 (95)
186 cd07702 Ig2_VEGFR-1 Second imm 99.0 1.2E-09 2.6E-14 65.6 7.0 64 33-101 1-69 (72)
187 PHA03376 BARF1; Provisional 99.0 3.6E-09 7.8E-14 73.5 10.0 111 145-258 22-161 (221)
188 cd05760 Ig2_PTK7 Second immuno 99.0 1.7E-09 3.6E-14 66.5 7.6 66 33-103 1-75 (77)
189 cd07690 Ig1_CD4 First immunogl 99.0 1.3E-09 2.9E-14 69.1 6.9 62 145-206 3-90 (94)
190 cd05855 Ig_TrkB_d5 Fifth domai 99.0 2.7E-09 5.9E-14 65.2 8.0 65 35-101 3-77 (79)
191 cd04971 Ig_TrKABC_d5 Fifth dom 99.0 2.8E-09 6.1E-14 65.9 8.1 65 35-101 3-79 (81)
192 cd04967 Ig1_Contactin First Ig 99.0 4.1E-09 8.9E-14 67.1 9.0 75 14-94 2-85 (91)
193 cd05895 Ig_Pro_neuregulin-1 Im 99.0 2.3E-09 5.1E-14 65.8 7.5 64 33-98 1-74 (76)
194 cd05727 Ig2_Contactin-2-like S 99.0 1.8E-09 3.9E-14 68.3 7.0 63 145-207 14-86 (96)
195 cd05738 Ig2_RPTP_IIa_LAR_like 99.0 3E-09 6.4E-14 64.9 7.5 66 33-102 1-73 (74)
196 cd05872 Ig_Sema4B_like Immunog 99.0 4.4E-09 9.6E-14 65.1 8.2 74 23-102 4-82 (85)
197 cd05729 Ig2_FGFR_like Second i 99.0 3.7E-09 8.1E-14 66.4 8.1 78 24-102 3-85 (85)
198 PF13895 Ig_2: Immunoglobulin 99.0 9.6E-10 2.1E-14 68.2 5.2 60 145-205 10-69 (80)
199 cd05862 Ig1_VEGFR First immuno 99.0 4E-09 8.7E-14 66.2 7.9 68 149-216 1-85 (86)
200 cd05871 Ig_Semaphorin_classIII 99.0 9.6E-09 2.1E-13 65.1 9.6 71 144-215 6-88 (91)
201 cd05727 Ig2_Contactin-2-like S 99.0 2.3E-09 4.9E-14 67.9 6.3 68 23-93 11-85 (96)
202 cd05897 Ig2_IL1R2_like Second 99.0 4E-09 8.8E-14 66.8 7.4 65 145-209 6-83 (95)
203 cd05860 Ig4_SCFR Fourth immuno 99.0 1.4E-08 3.1E-13 64.3 9.6 74 143-216 12-100 (101)
204 cd05774 Ig_CEACAM_D1 First imm 99.0 5.2E-09 1.1E-13 67.8 7.8 78 24-101 7-104 (105)
205 cd05885 Ig2_Necl-4 Second immu 99.0 6.4E-09 1.4E-13 63.4 7.5 56 152-207 2-69 (80)
206 cd05750 Ig_Pro_neuregulin Immu 98.9 3.2E-09 6.9E-14 65.0 6.4 64 33-98 1-73 (75)
207 PF13895 Ig_2: Immunoglobulin 98.9 9.1E-09 2E-13 63.8 8.5 66 25-102 9-80 (80)
208 cd05713 Ig_MOG_like Immunoglob 98.9 1.1E-08 2.3E-13 66.5 8.9 73 30-102 1-99 (100)
209 cd05733 Ig6_L1-CAM_like Sixth 98.9 4.1E-09 8.9E-14 64.8 6.5 58 33-94 1-69 (77)
210 PF00047 ig: Immunoglobulin do 98.9 2.3E-09 5.1E-14 63.4 5.3 58 30-87 1-64 (64)
211 PF00047 ig: Immunoglobulin do 98.9 3.5E-09 7.7E-14 62.6 6.0 52 149-200 1-64 (64)
212 cd05896 Ig1_IL1RAPL-1_like Fir 98.9 1.5E-08 3.2E-13 64.5 8.8 70 145-214 11-103 (104)
213 cd05874 Ig6_NrCAM Sixth immuno 98.9 7.9E-09 1.7E-13 63.4 7.2 60 33-94 1-69 (77)
214 cd07690 Ig1_CD4 First immunogl 98.9 5.6E-09 1.2E-13 66.2 6.6 69 25-93 2-90 (94)
215 cd05877 Ig_LP_like Immunoglobu 98.9 1.8E-08 3.8E-13 66.2 9.2 76 29-104 1-104 (106)
216 smart00408 IGc2 Immunoglobulin 98.9 7.4E-09 1.6E-13 60.8 6.7 58 29-92 1-63 (63)
217 cd05751 Ig1_LILRB1_like First 98.9 8.4E-09 1.8E-13 65.6 7.2 58 145-203 12-75 (91)
218 cd05751 Ig1_LILRB1_like First 98.9 9E-09 2E-13 65.4 7.2 70 13-90 2-75 (91)
219 KOG3515|consensus 98.9 1.3E-08 2.8E-13 86.1 9.9 211 24-263 106-343 (741)
220 cd05900 Ig_Aggrecan Immunoglob 98.9 3.3E-08 7.2E-13 64.9 9.7 76 29-104 1-110 (112)
221 cd05875 Ig6_hNeurofascin_like 98.9 1.1E-08 2.4E-13 62.7 7.1 58 33-94 1-69 (77)
222 cd05741 Ig_CEACAM_D1_like Firs 98.9 1.5E-08 3.1E-13 64.8 7.9 71 30-100 1-90 (92)
223 cd05717 Ig1_Necl-1-3_like Firs 98.9 3.9E-08 8.5E-13 63.1 9.9 62 143-204 6-85 (95)
224 cd05714 Ig_CSPGs_LP Immunoglob 98.9 2.6E-08 5.7E-13 65.4 9.0 76 29-104 1-104 (106)
225 cd05759 Ig2_KIRREL3-like Secon 98.9 1.8E-08 3.9E-13 62.7 7.7 64 152-215 2-80 (82)
226 cd05845 Ig2_L1-CAM_like Second 98.9 2.4E-08 5.2E-13 63.1 8.0 65 142-206 11-84 (95)
227 smart00410 IG_like Immunoglobu 98.9 4.2E-08 9E-13 61.4 9.4 75 23-102 2-85 (86)
228 smart00409 IG Immunoglobulin. 98.9 4.2E-08 9E-13 61.4 9.4 75 23-102 2-85 (86)
229 smart00409 IG Immunoglobulin. 98.9 6.1E-08 1.3E-12 60.6 10.1 70 145-214 5-84 (86)
230 smart00410 IG_like Immunoglobu 98.9 6.1E-08 1.3E-12 60.6 10.1 70 145-214 5-84 (86)
231 cd05880 Ig_EVA1 Immunoglobulin 98.9 4.2E-08 9.1E-13 65.2 9.5 70 23-92 6-103 (115)
232 cd05887 Ig1_Nectin-3_like Firs 98.8 5.1E-08 1.1E-12 62.0 9.3 72 31-102 1-95 (96)
233 cd05886 Ig1_Nectin-1_like Firs 98.8 4.5E-08 9.8E-13 62.8 9.1 71 32-102 2-98 (99)
234 cd05846 Ig1_MRC-OX-2_like Firs 98.8 4.3E-08 9.3E-13 63.2 9.0 73 30-102 1-96 (97)
235 cd05878 Ig_Aggrecan_like Immun 98.8 5.3E-08 1.2E-12 64.1 9.6 75 30-104 2-108 (110)
236 cd05872 Ig_Sema4B_like Immunog 98.8 4.5E-08 9.8E-13 60.6 8.3 59 143-202 5-68 (85)
237 cd05879 Ig_P0 Immunoglobulin ( 98.8 5E-08 1.1E-12 64.5 8.9 71 23-93 6-105 (116)
238 cd04983 IgV_TCR_alpha_like Imm 98.8 5.5E-08 1.2E-12 64.2 8.7 69 23-91 6-93 (109)
239 cd05711 Ig_FcalphaRI Immunoglo 98.8 4.2E-08 9.1E-13 62.6 7.7 71 14-89 2-76 (94)
240 cd05718 Ig1_PVR_like First imm 98.8 1.1E-07 2.3E-12 61.5 9.6 72 31-102 1-97 (98)
241 cd05845 Ig2_L1-CAM_like Second 98.8 4.8E-08 1E-12 61.8 7.6 74 14-93 3-84 (95)
242 cd05881 Ig1_Necl-2 First (N-te 98.8 1E-07 2.2E-12 60.4 9.1 68 23-90 5-84 (95)
243 PHA02987 Ig domain OX-2-like p 98.8 1.2E-07 2.6E-12 66.4 10.0 85 23-107 23-126 (189)
244 cd05715 Ig_P0-like Immunoglobu 98.8 1.3E-07 2.9E-12 63.0 9.5 70 23-92 6-104 (116)
245 cd05885 Ig2_Necl-4 Second immu 98.8 1.1E-07 2.3E-12 58.1 8.1 62 32-93 1-68 (80)
246 PF13927 Ig_3: Immunoglobulin 98.7 4.4E-08 9.5E-13 59.8 5.8 69 13-89 1-75 (75)
247 cd05775 Ig_SLAM-CD84_like_N N- 98.7 1.2E-07 2.6E-12 61.0 7.8 75 28-102 2-96 (97)
248 cd05902 Ig_Neurocan Immunoglob 98.7 2.3E-07 5E-12 60.7 9.0 75 30-104 2-108 (110)
249 cd05888 Ig1_Nectin-4_like Frst 98.7 2.4E-07 5.2E-12 59.9 8.9 71 32-102 2-99 (100)
250 cd04980 IgV_L_kappa Immunoglob 98.7 6E-08 1.3E-12 63.6 6.0 68 23-90 8-93 (106)
251 cd05860 Ig4_SCFR Fourth immuno 98.7 5.4E-07 1.2E-11 57.2 9.6 81 23-103 11-100 (101)
252 cd05889 Ig1_DNAM-1_like First 98.7 4.4E-07 9.5E-12 57.8 9.3 69 31-99 1-92 (96)
253 cd05901 Ig_Versican Immunoglob 98.7 5.4E-07 1.2E-11 59.1 9.7 75 30-104 2-115 (117)
254 cd00099 IgV Immunoglobulin var 98.7 1.5E-07 3.2E-12 61.7 7.3 67 26-92 2-91 (105)
255 cd05899 IgV_TCR_beta Immunoglo 98.6 1.3E-07 2.9E-12 62.5 7.0 68 23-90 6-94 (110)
256 cd05774 Ig_CEACAM_D1 First imm 98.6 3.3E-07 7.2E-12 59.4 8.3 61 145-205 9-94 (105)
257 cd07706 IgV_TCR_delta Immunogl 98.6 2.5E-07 5.3E-12 61.8 7.8 67 23-89 7-93 (116)
258 PHA03270 envelope glycoprotein 98.6 3.7E-05 8.1E-10 60.7 20.4 155 69-262 183-361 (466)
259 PF07686 V-set: Immunoglobulin 98.6 5.7E-07 1.2E-11 59.7 9.2 80 23-102 9-114 (114)
260 cd04983 IgV_TCR_alpha_like Imm 98.6 5E-07 1.1E-11 59.6 8.8 64 141-204 5-93 (109)
261 cd05897 Ig2_IL1R2_like Second 98.6 3.3E-07 7.1E-12 58.1 7.4 66 24-94 4-81 (95)
262 cd05879 Ig_P0 Immunoglobulin ( 98.6 8E-07 1.7E-11 58.9 9.5 70 143-212 7-111 (116)
263 cd05714 Ig_CSPGs_LP Immunoglob 98.6 8.4E-07 1.8E-11 58.2 9.4 38 179-216 66-103 (106)
264 cd05883 Ig2_Necl-2 Second immu 98.6 6.3E-07 1.4E-11 54.9 7.9 55 152-206 2-69 (82)
265 cd05881 Ig1_Necl-2 First (N-te 98.6 1.2E-06 2.6E-11 55.6 9.3 62 142-203 5-84 (95)
266 PF13927 Ig_3: Immunoglobulin 98.6 2.7E-08 5.7E-13 60.8 1.7 51 152-202 18-75 (75)
267 cd04984 IgV_L_lambda Immunoglo 98.6 1.9E-07 4E-12 60.3 5.6 64 26-89 2-84 (98)
268 cd05877 Ig_LP_like Immunoglobu 98.5 1.1E-06 2.3E-11 57.7 9.1 38 180-217 67-104 (106)
269 cd05899 IgV_TCR_beta Immunoglo 98.5 6.8E-07 1.5E-11 59.0 8.2 62 141-203 5-94 (110)
270 cd05741 Ig_CEACAM_D1_like Firs 98.5 8.1E-07 1.8E-11 56.6 8.2 58 149-206 1-82 (92)
271 cd05900 Ig_Aggrecan Immunoglob 98.5 1.3E-06 2.8E-11 57.4 9.2 38 179-216 72-109 (112)
272 cd05713 Ig_MOG_like Immunoglob 98.5 1E-06 2.2E-11 57.1 8.7 36 180-215 64-99 (100)
273 cd05878 Ig_Aggrecan_like Immun 98.5 1.8E-06 4E-11 56.8 9.5 37 180-216 71-107 (110)
274 cd04982 IgV_TCR_gamma Immunogl 98.5 7.8E-07 1.7E-11 59.4 7.6 67 23-89 6-98 (116)
275 cd05716 Ig_pIgR Immunoglobulin 98.5 1.2E-06 2.6E-11 56.6 8.2 67 25-91 2-87 (98)
276 cd05712 Ig_Siglec_N Immunoglob 98.5 1.9E-06 4E-11 57.8 8.6 68 23-90 7-102 (119)
277 PHA03273 envelope glycoprotein 98.4 2.3E-05 5.1E-10 62.4 15.1 152 69-259 199-376 (486)
278 cd05759 Ig2_KIRREL3-like Secon 98.4 3.6E-06 7.9E-11 52.3 8.5 63 32-94 1-72 (82)
279 cd05711 Ig_FcalphaRI Immunoglo 98.4 1.5E-06 3.3E-11 55.4 6.6 57 145-202 11-76 (94)
280 cd07700 IgV_CD8_beta Immunoglo 98.4 1.6E-06 3.5E-11 56.9 6.7 64 26-89 2-93 (107)
281 cd05718 Ig1_PVR_like First imm 98.4 5E-06 1.1E-10 53.6 9.0 36 180-215 61-97 (98)
282 cd05761 Ig2_Necl-1-4_like Seco 98.4 2.4E-06 5.3E-11 53.0 7.2 55 152-206 2-70 (82)
283 cd05880 Ig_EVA1 Immunoglobulin 98.4 6.3E-06 1.4E-10 54.8 9.5 65 141-205 5-103 (115)
284 cd00098 IgC Immunoglobulin Con 98.4 1.2E-06 2.5E-11 56.3 5.7 59 148-206 12-87 (95)
285 cd05715 Ig_P0-like Immunoglobu 98.4 7.4E-06 1.6E-10 54.6 9.7 66 141-206 5-105 (116)
286 cd05775 Ig_SLAM-CD84_like_N N- 98.4 2E-06 4.3E-11 55.3 6.7 59 148-206 3-86 (97)
287 cd05755 Ig2_ICAM-1_like Second 98.4 2.1E-06 4.6E-11 54.8 6.6 61 145-206 12-87 (100)
288 cd05884 Ig2_Necl-3 Second immu 98.3 2.4E-06 5.2E-11 53.0 6.4 55 152-206 2-71 (83)
289 PHA03269 envelope glycoprotein 98.3 4.3E-05 9.3E-10 61.2 14.5 154 69-261 290-470 (566)
290 cd07694 Ig2_CD4 Second immunog 98.3 1.1E-05 2.3E-10 49.5 8.7 71 145-215 10-85 (88)
291 cd07705 Ig2_Necl-1 Second immu 98.3 7E-06 1.5E-10 51.0 8.2 55 152-206 2-71 (83)
292 cd04980 IgV_L_kappa Immunoglob 98.3 3.4E-06 7.3E-11 55.3 6.9 62 141-202 7-92 (106)
293 cd05846 Ig1_MRC-OX-2_like Firs 98.3 1.3E-05 2.8E-10 51.6 9.3 37 179-215 59-96 (97)
294 cd05720 Ig_CD8_alpha Immunoglo 98.3 1.7E-06 3.7E-11 56.4 5.2 64 26-89 2-90 (104)
295 PHA02987 Ig domain OX-2-like p 98.3 1.7E-05 3.7E-10 55.8 9.7 74 144-217 25-123 (189)
296 cd05888 Ig1_Nectin-4_like Frst 98.3 1.8E-05 3.8E-10 51.2 9.3 37 179-215 62-99 (100)
297 cd00099 IgV Immunoglobulin var 98.2 3.8E-06 8.3E-11 54.9 6.0 61 145-205 2-91 (105)
298 cd00098 IgC Immunoglobulin Con 98.2 6.4E-06 1.4E-10 52.8 6.9 66 28-93 11-87 (95)
299 cd05755 Ig2_ICAM-1_like Second 98.2 6.9E-06 1.5E-10 52.5 6.8 69 24-93 10-87 (100)
300 cd04981 IgV_H Immunoglobulin ( 98.2 9.4E-06 2E-10 54.1 7.8 67 23-89 5-97 (117)
301 cd05901 Ig_Versican Immunoglob 98.2 3.1E-05 6.8E-10 50.9 9.5 37 180-216 78-114 (117)
302 cd05902 Ig_Neurocan Immunoglob 98.2 1.7E-05 3.7E-10 51.9 8.2 37 180-216 71-107 (110)
303 cd04982 IgV_TCR_gamma Immunogl 98.2 9.1E-06 2E-10 54.2 7.0 62 141-202 5-98 (116)
304 cd05883 Ig2_Necl-2 Second immu 98.2 2.4E-05 5.2E-10 48.0 8.0 72 32-103 1-80 (82)
305 PF07686 V-set: Immunoglobulin 98.2 6.7E-06 1.5E-10 54.5 6.0 62 142-203 9-101 (114)
306 cd05886 Ig1_Nectin-1_like Firs 98.2 6.4E-05 1.4E-09 48.3 10.1 37 179-215 61-98 (99)
307 cd05772 IgC_SIRP Signal-regula 98.2 2.6E-05 5.7E-10 51.2 8.5 62 145-207 17-95 (111)
308 PHA03271 envelope glycoprotein 98.1 0.00032 7E-09 55.3 15.5 154 69-261 208-386 (490)
309 cd04984 IgV_L_lambda Immunoglo 98.1 1E-05 2.2E-10 52.2 6.5 58 145-202 2-84 (98)
310 cd07694 Ig2_CD4 Second immunog 98.1 3.2E-05 7E-10 47.4 8.0 72 24-103 8-86 (88)
311 cd05887 Ig1_Nectin-3_like Firs 98.1 7.6E-05 1.6E-09 47.5 9.8 37 179-215 58-95 (96)
312 cd07699 IgC_L Immunoglobulin C 98.1 5.2E-06 1.1E-10 53.6 3.7 60 146-205 14-90 (100)
313 cd07699 IgC_L Immunoglobulin C 98.0 9.6E-06 2.1E-10 52.3 4.7 79 13-92 1-90 (100)
314 cd07706 IgV_TCR_delta Immunogl 98.0 2.6E-05 5.6E-10 52.0 6.8 63 141-203 6-94 (116)
315 smart00407 IGc1 Immunoglobulin 98.0 2.9E-05 6.2E-10 47.3 6.1 53 152-204 2-71 (75)
316 cd07692 Ig_CD3_epsilon Immunog 98.0 2.5E-05 5.5E-10 44.9 5.2 51 148-203 6-56 (65)
317 cd07691 Ig_CD3_gamma_delta Imm 98.0 5E-05 1.1E-09 44.0 6.3 49 149-202 6-54 (69)
318 PHA02914 Immunoglobulin-like d 98.0 0.0054 1.2E-07 48.4 21.0 113 142-263 272-422 (500)
319 cd05716 Ig_pIgR Immunoglobulin 98.0 7.1E-05 1.5E-09 48.2 7.6 60 145-204 3-87 (98)
320 cd07698 IgC_MHC_I_alpha3 Class 97.9 7.8E-05 1.7E-09 47.5 7.5 73 13-93 2-85 (93)
321 cd05847 IgC_CH2_IgE CH2 domain 97.9 3.1E-05 6.6E-10 49.3 5.1 59 148-206 13-88 (94)
322 cd07700 IgV_CD8_beta Immunoglo 97.9 4.9E-05 1.1E-09 49.8 6.1 57 145-201 2-92 (107)
323 cd05889 Ig1_DNAM-1_like First 97.9 0.00032 6.9E-09 44.7 9.5 34 179-212 58-92 (96)
324 smart00406 IGv Immunoglobulin 97.9 4.7E-05 1E-09 47.0 5.7 56 32-87 1-81 (81)
325 cd00096 Ig Immunoglobulin doma 97.9 7.5E-05 1.6E-09 44.2 6.5 53 152-204 1-66 (74)
326 cd00096 Ig Immunoglobulin doma 97.9 8.6E-05 1.9E-09 44.0 6.5 59 33-91 1-66 (74)
327 cd07691 Ig_CD3_gamma_delta Imm 97.8 6.1E-05 1.3E-09 43.7 4.9 59 30-104 6-65 (69)
328 cd05766 IgC_MHC_II_beta Class 97.8 0.00014 3.1E-09 46.2 7.2 61 146-206 11-85 (94)
329 cd05769 IgC_TCR_beta T cell re 97.8 4.3E-05 9.3E-10 50.4 4.8 62 147-208 16-96 (115)
330 cd05712 Ig_Siglec_N Immunoglob 97.8 0.00023 5E-09 47.6 8.2 63 141-203 6-102 (119)
331 cd07696 IgC_CH3 CH3 domain (th 97.8 5.2E-05 1.1E-09 48.4 4.7 61 145-205 10-87 (96)
332 cd05772 IgC_SIRP Signal-regula 97.8 0.00032 7E-09 46.1 8.4 67 26-93 17-94 (111)
333 cd05761 Ig2_Necl-1-4_like Seco 97.8 0.0003 6.5E-09 43.6 7.9 61 33-93 2-70 (82)
334 cd05769 IgC_TCR_beta T cell re 97.8 0.0001 2.2E-09 48.6 6.0 80 13-93 2-94 (115)
335 cd05721 IgV_CTLA-4 Immunoglobu 97.8 9.9E-05 2.1E-09 48.0 5.6 66 23-88 6-94 (115)
336 cd05720 Ig_CD8_alpha Immunoglo 97.8 0.00011 2.3E-09 47.9 5.9 58 145-202 2-90 (104)
337 cd05768 IgC_CH4 CH4 domain (fo 97.8 5.4E-05 1.2E-09 49.0 4.5 59 147-205 14-92 (102)
338 cd05768 IgC_CH4 CH4 domain (fo 97.7 0.00014 2.9E-09 47.1 5.7 66 27-92 13-92 (102)
339 cd07705 Ig2_Necl-1 Second immu 97.7 0.00091 2E-08 41.5 9.1 61 33-93 2-71 (83)
340 cd07698 IgC_MHC_I_alpha3 Class 97.7 0.00028 6.1E-09 44.9 7.0 57 149-205 14-84 (93)
341 cd07704 Ig2_Nectin-3-4_like Se 97.7 0.00088 1.9E-08 42.5 8.9 71 23-93 9-86 (97)
342 cd05847 IgC_CH2_IgE CH2 domain 97.7 0.00021 4.5E-09 45.4 6.1 64 29-92 13-87 (94)
343 cd05766 IgC_MHC_II_beta Class 97.7 0.00038 8.3E-09 44.3 7.3 64 27-93 11-85 (94)
344 PF08205 C2-set_2: CD80-like C 97.7 0.00028 6.1E-09 44.4 6.7 64 30-93 14-86 (89)
345 cd05719 Ig2_PVR_like Second im 97.6 0.001 2.2E-08 42.4 8.9 68 28-95 13-86 (95)
346 cd05884 Ig2_Necl-3 Second immu 97.6 0.00066 1.4E-08 42.1 7.7 61 33-93 2-71 (83)
347 cd07703 Ig2_Nectin-2_like Seco 97.6 0.0011 2.5E-08 42.0 8.9 74 27-100 12-91 (95)
348 cd05770 IgC_beta2m Class I maj 97.6 0.00045 9.7E-09 43.7 6.9 57 148-204 14-83 (93)
349 cd07703 Ig2_Nectin-2_like Seco 97.6 0.00061 1.3E-08 43.3 7.5 66 150-215 16-93 (95)
350 PHA02982 hypothetical protein; 97.6 0.0012 2.7E-08 47.2 9.5 79 24-102 33-135 (251)
351 PHA02633 hypothetical protein; 97.6 0.00029 6.3E-09 39.8 5.1 39 67-105 17-55 (63)
352 cd04981 IgV_H Immunoglobulin ( 97.6 0.0004 8.6E-09 46.3 6.9 60 143-202 6-97 (117)
353 cd04986 IgC_CH2 CH2 domain (se 97.6 0.00026 5.7E-09 45.2 5.4 79 13-92 3-90 (99)
354 cd05767 IgC_MHC_II_alpha Class 97.6 0.00046 1E-08 43.8 6.6 54 148-204 14-84 (94)
355 smart00407 IGc1 Immunoglobulin 97.5 0.00061 1.3E-08 41.4 6.8 60 32-91 1-71 (75)
356 cd05767 IgC_MHC_II_alpha Class 97.5 0.0011 2.3E-08 42.2 8.1 61 28-91 13-84 (94)
357 cd07696 IgC_CH3 CH3 domain (th 97.5 0.00066 1.4E-08 43.3 7.1 68 26-93 10-88 (96)
358 cd04985 IgC_CH1 CH1 domain (fi 97.5 0.00076 1.6E-08 43.0 7.3 62 29-91 15-87 (95)
359 cd05770 IgC_beta2m Class I maj 97.5 0.00055 1.2E-08 43.3 6.5 61 27-91 12-83 (93)
360 cd07692 Ig_CD3_epsilon Immunog 97.5 0.00017 3.8E-09 41.5 3.7 50 28-90 5-56 (65)
361 PF08205 C2-set_2: CD80-like C 97.5 0.00026 5.7E-09 44.6 5.0 58 149-206 14-86 (89)
362 PF07654 C1-set: Immunoglobuli 97.5 0.0016 3.5E-08 40.4 8.1 62 29-93 7-79 (83)
363 PF07654 C1-set: Immunoglobuli 97.4 0.00035 7.6E-09 43.4 4.8 56 148-206 7-79 (83)
364 cd07697 IgC_TCR_gamma T cell r 97.4 0.00035 7.7E-09 44.5 4.8 58 147-204 14-85 (96)
365 PHA02633 hypothetical protein; 97.4 0.00078 1.7E-08 38.1 5.2 41 176-216 13-53 (63)
366 cd07704 Ig2_Nectin-3-4_like Se 97.4 0.0021 4.5E-08 40.9 7.8 68 144-211 11-91 (97)
367 cd05719 Ig2_PVR_like Second im 97.4 0.0021 4.5E-08 41.0 7.7 66 150-215 16-93 (95)
368 cd04985 IgC_CH1 CH1 domain (fi 97.3 0.00086 1.9E-08 42.7 5.9 56 148-204 15-87 (95)
369 PF08204 V-set_CD47: CD47 immu 97.3 0.00023 5.1E-09 47.4 3.3 77 26-103 23-120 (130)
370 cd07697 IgC_TCR_gamma T cell r 97.3 0.0011 2.4E-08 42.2 6.2 63 26-91 12-85 (96)
371 cd04986 IgC_CH2 CH2 domain (se 97.3 0.00039 8.4E-09 44.4 4.0 59 146-205 16-90 (99)
372 smart00406 IGv Immunoglobulin 97.3 0.0007 1.5E-08 41.6 4.8 22 179-200 60-81 (81)
373 PF11465 Receptor_2B4: Natural 97.3 0.002 4.4E-08 41.0 6.7 43 60-102 61-106 (108)
374 KOG1480|consensus 97.1 0.0004 8.6E-09 59.1 3.1 62 145-206 140-208 (909)
375 PHA03270 envelope glycoprotein 97.1 0.0057 1.2E-07 48.9 9.2 83 179-264 180-265 (466)
376 cd05721 IgV_CTLA-4 Immunoglobu 97.1 0.0047 1E-07 40.4 7.0 56 145-200 9-93 (115)
377 PHA03271 envelope glycoprotein 96.9 0.0062 1.3E-07 48.4 8.0 83 180-264 206-291 (490)
378 cd07689 Ig2_VCAM-1 Second immu 96.9 0.0048 1E-07 39.1 6.1 72 13-91 3-86 (99)
379 PHA02914 Immunoglobulin-like d 96.9 0.019 4E-07 45.6 10.2 82 23-104 272-382 (500)
380 PHA03273 envelope glycoprotein 96.9 0.0092 2E-07 48.2 8.7 80 181-263 198-280 (486)
381 cd07689 Ig2_VCAM-1 Second immu 96.9 0.01 2.3E-07 37.6 7.1 59 145-204 11-86 (99)
382 PHA03269 envelope glycoprotein 96.8 0.012 2.6E-07 47.8 8.6 83 179-264 287-373 (566)
383 TIGR00864 PCC polycystin catio 96.6 0.66 1.4E-05 46.7 20.0 191 24-259 1706-1905(2740)
384 PHA02982 hypothetical protein; 96.5 0.051 1.1E-06 39.2 9.5 108 146-261 36-173 (251)
385 PF08204 V-set_CD47: CD47 immu 96.4 0.004 8.6E-08 41.7 3.0 70 145-215 23-119 (130)
386 PHA03042 CD47-like protein; Pr 96.0 0.05 1.1E-06 41.0 7.6 69 146-215 28-104 (286)
387 TIGR00864 PCC polycystin catio 96.0 2.1 4.6E-05 43.4 20.8 184 26-258 1796-1990(2740)
388 PHA03042 CD47-like protein; Pr 95.3 0.11 2.3E-06 39.3 7.0 67 26-101 27-103 (286)
389 PHA03282 envelope glycoprotein 95.1 1.6 3.4E-05 36.0 13.3 46 58-103 114-161 (540)
390 KOG4597|consensus 95.1 0.056 1.2E-06 44.0 5.4 82 23-104 204-293 (560)
391 PHA02865 MHC-like TNF binding 94.8 0.13 2.8E-06 40.5 6.5 35 7-47 197-238 (338)
392 PF07354 Sp38: Zona-pellucida- 94.4 0.079 1.7E-06 39.8 4.4 42 163-204 12-60 (271)
393 KOG0613|consensus 94.4 0.43 9.3E-06 44.0 9.6 180 69-259 279-477 (1205)
394 KOG4597|consensus 93.5 0.13 2.9E-06 41.9 4.4 77 140-216 202-292 (560)
395 KOG1480|consensus 93.3 0.063 1.4E-06 46.4 2.5 76 23-103 137-219 (909)
396 PF02124 Marek_A: Marek's dise 92.9 1.5 3.2E-05 32.3 8.6 89 165-261 8-116 (211)
397 PHA03283 envelope glycoprotein 92.6 5.5 0.00012 33.5 13.3 37 68-104 134-170 (542)
398 PHA02865 MHC-like TNF binding 92.0 0.54 1.2E-05 37.2 5.8 21 151-171 216-238 (338)
399 PF02480 Herpes_gE: Alphaherpe 91.1 0.49 1.1E-05 39.3 5.0 43 62-104 83-126 (439)
400 PF05790 C2-set: Immunoglobuli 90.7 1.4 3E-05 27.0 5.6 38 163-201 26-63 (80)
401 PF07354 Sp38: Zona-pellucida- 90.7 0.51 1.1E-05 35.7 4.3 45 42-91 15-60 (271)
402 PHA03052 Hypothetical protein; 90.6 0.92 2E-05 26.4 4.4 32 144-175 7-41 (69)
403 PHA03052 Hypothetical protein; 90.6 1.1 2.4E-05 26.1 4.6 35 229-263 5-42 (69)
404 cd05890 Ig2_Nectin-1_like Seco 89.9 3.1 6.8E-05 26.2 6.6 68 32-99 22-95 (98)
405 PF11465 Receptor_2B4: Natural 89.0 1.7 3.7E-05 28.0 5.1 29 179-207 69-97 (108)
406 PF06328 Lep_receptor_Ig: Ig-l 88.1 3 6.6E-05 26.1 5.8 58 145-202 14-83 (89)
407 PF06832 BiPBP_C: Penicillin-B 88.0 4.7 0.0001 25.1 8.5 54 151-208 31-85 (89)
408 PHA03189 UL14 tegument protein 87.7 4.9 0.00011 31.2 7.6 19 23-41 60-78 (348)
409 PF06328 Lep_receptor_Ig: Ig-l 86.4 3.3 7.1E-05 26.0 5.3 62 23-88 11-82 (89)
410 PHA03286 envelope glycoprotein 84.8 22 0.00047 29.6 13.0 36 68-103 127-163 (492)
411 PF03921 ICAM_N: Intercellular 84.2 8.1 0.00018 24.3 7.8 76 16-106 6-89 (91)
412 PF06832 BiPBP_C: Penicillin-B 83.2 7.9 0.00017 24.1 6.1 24 238-262 31-54 (89)
413 PRK14081 triple tyrosine motif 81.4 39 0.00084 30.1 19.0 113 145-262 397-525 (667)
414 PHA03112 IL-18 binding protein 81.3 11 0.00024 25.8 6.4 67 26-92 34-120 (141)
415 PF05790 C2-set: Immunoglobuli 81.3 10 0.00022 23.2 9.0 26 63-88 38-63 (80)
416 PRK14081 triple tyrosine motif 79.9 44 0.00095 29.8 17.7 192 25-256 396-612 (667)
417 KOG0613|consensus 79.4 8.9 0.00019 36.1 7.1 121 145-265 240-379 (1205)
418 PHA03281 envelope glycoprotein 79.2 40 0.00086 28.9 12.9 37 68-104 298-335 (642)
419 PF12988 DUF3872: Domain of un 79.0 13 0.00028 25.2 6.1 40 2-41 19-58 (137)
420 PF11049 KSHV_K1: Glycoprotein 78.6 4 8.7E-05 23.6 3.1 44 153-202 2-45 (71)
421 PHA03240 envelope glycoprotein 78.5 4.7 0.0001 29.5 4.2 63 24-86 32-123 (258)
422 PHA03283 envelope glycoprotein 76.2 47 0.001 28.3 9.7 80 178-257 131-233 (542)
423 PF02440 Adeno_E3_CR1: Adenovi 75.5 9.2 0.0002 22.1 4.1 21 27-47 2-23 (63)
424 cd05890 Ig2_Nectin-1_like Seco 74.9 12 0.00026 23.8 4.7 56 152-207 23-90 (98)
425 PF03921 ICAM_N: Intercellular 69.7 24 0.00053 22.2 5.4 75 140-216 9-86 (91)
426 PF15096 G6B: G6B family 67.9 5.2 0.00011 28.5 2.3 22 24-45 5-28 (224)
427 KOG1026|consensus 66.1 13 0.00027 33.4 4.8 72 143-216 201-273 (774)
428 PHA03189 UL14 tegument protein 64.4 69 0.0015 25.3 7.9 23 187-209 139-161 (348)
429 PHA03286 envelope glycoprotein 61.2 1E+02 0.0022 26.0 9.6 81 177-257 123-225 (492)
430 PHA03281 envelope glycoprotein 55.6 1.4E+02 0.003 25.9 10.9 79 179-257 296-394 (642)
431 PF01688 Herpes_gI: Alphaherpe 53.4 37 0.0008 24.0 4.5 25 69-93 125-149 (161)
432 PF09085 Adhes-Ig_like: Adhesi 52.8 26 0.00057 22.2 3.2 33 232-264 12-49 (110)
433 KOG3611|consensus 50.7 42 0.0009 30.4 5.4 72 32-103 571-648 (737)
434 KOG1026|consensus 49.8 52 0.0011 29.8 5.8 70 24-105 201-275 (774)
435 PF00801 PKD: PKD domain; Int 46.7 57 0.0012 18.9 4.8 56 145-205 7-65 (69)
436 PF02010 REJ: REJ domain; Int 42.1 83 0.0018 26.4 5.9 76 181-257 148-233 (440)
437 PHA03290 envelope glycoprotein 38.4 87 0.0019 25.1 4.8 25 68-92 129-153 (357)
438 COG5475 Uncharacterized small 36.5 74 0.0016 17.8 3.0 23 69-93 19-41 (60)
439 PF01688 Herpes_gI: Alphaherpe 31.4 1.7E+02 0.0036 20.9 4.9 26 179-204 122-147 (161)
440 PHA03292 envelope glycoprotein 31.2 1.2E+02 0.0026 24.9 4.6 37 68-104 128-166 (413)
441 PHA03289 envelope glycoprotein 30.3 1.4E+02 0.003 23.9 4.8 25 69-93 123-147 (352)
442 PF06214 SLAM: Signaling lymph 29.3 71 0.0015 20.9 2.6 24 65-88 100-123 (126)
443 PHA03282 envelope glycoprotein 27.8 61 0.0013 27.3 2.6 23 68-90 333-355 (540)
444 PF05566 Pox_vIL-18BP: Orthopo 27.5 1.8E+02 0.004 19.0 5.4 35 66-100 91-125 (126)
445 smart00089 PKD Repeats in poly 27.2 1.4E+02 0.0031 17.6 8.9 61 148-213 13-76 (79)
446 PF15418 DUF4625: Domain of un 26.8 2.1E+02 0.0046 19.5 10.0 33 9-41 10-46 (132)
447 KOG0200|consensus 26.2 4.8E+02 0.01 23.4 10.4 24 66-89 11-34 (609)
448 PHA03291 envelope glycoprotein 22.5 2.3E+02 0.0049 23.1 4.7 36 68-103 129-164 (401)
449 PF13220 DUF4028: Protein of u 21.8 1.1E+02 0.0023 16.9 2.0 18 77-94 7-24 (65)
450 PF02480 Herpes_gE: Alphaherpe 20.6 92 0.002 26.4 2.5 23 68-90 269-291 (439)
No 1
>KOG3513|consensus
Probab=99.97 E-value=7.3e-30 Score=216.14 Aligned_cols=219 Identities=27% Similarity=0.438 Sum_probs=185.3
Q ss_pred cccCCCcccCCCCceeEEecCCCeEEEEEEecc-----eeeeecccCcceeccccCCceE--EEEeeEEEEeecccCCCe
Q psy3045 9 VGFKAPTFSSVSDIIRFKKPGGESFALLCEAQE-----NMWFKFIEGSSRKVAVPLNDRV--KQVSGTLIIKEAKVEDSG 81 (267)
Q Consensus 9 ~~~~~P~~~~~~~~~~~~v~~g~~v~l~C~~~~-----~~W~~~~~~~~~~~~~~~~~~~--~~~~~~l~i~~~~~~d~G 81 (267)
....+|.|..... .......|+.|.|.|-+.| +.|.|.+.. ....+. ...+..|.|.+++.+|+|
T Consensus 236 ~~~~~P~i~~~~p-~~~~a~~G~~v~LECfA~G~P~P~i~W~k~~g~-------~~~~r~~~~~~~~vL~I~nv~~~D~G 307 (1051)
T KOG3513|consen 236 MREYAPKILVPFP-ETETALKGQSVKLECFALGNPTPQIKWRKVDGK-------PPPRRATYSNYGKVLKIPNVQYEDAG 307 (1051)
T ss_pred ccccCCccccCCC-CcccccCCCeEEEEEEecCCCCCcEEEEeCCCC-------CCCcceeeeccccEEEecccCcCCCe
Confidence 4455788877764 4788899999999999999 999996321 233333 334568999999999999
Q ss_pred eEEEEEEcCCCccEEEEEEEEEeccccccCCceEEEeCCCceEEEEEeecCCCcccccCCceEEEecCCCEEEEeEeCCC
Q psy3045 82 KYLCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEGN 161 (267)
Q Consensus 82 ~Y~C~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~ 161 (267)
.|+|.+.|..|.......+.|..+|.....++.. .+..|+++.+.|.+.|.
T Consensus 308 ~Y~C~AeN~~G~~~~~~~v~v~a~P~w~~~~~d~-----------------------------~~~~gs~v~~eC~a~g~ 358 (1051)
T KOG3513|consen 308 EYECIAENSRGSATHSGHVTVYAPPYWLQKPQDT-----------------------------EADTGSNVTLECKASGK 358 (1051)
T ss_pred EEEEEEecccccceeeEEEEEecCchhhccccee-----------------------------EecCCCCeEEEEEecCC
Confidence 9999999999999999999999988877766655 78889999999999999
Q ss_pred CCceEEEEECCccCCCCC--------CCeEEeccCCCCCCeEEEEEEEcCCCCceEEEEEEEecccCCCeeecCCcee--
Q psy3045 162 PVKTISWMKDGKPVPDHN--------EPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLGGRFDPPVIKESFSDE-- 231 (267)
Q Consensus 162 p~~~~~W~~~~~~~~~~~--------~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v~~~~~~p~~~~~~~~~-- 231 (267)
|.|.+.|++||.++.... ...|.|.++...|+|.|.|.|+|..|...+.+.|.|.. .+|.+...+...
T Consensus 359 P~p~v~WlkNg~pl~~~~r~~~~~i~~g~L~is~v~~~dsg~YQC~A~Nk~G~i~anA~L~V~a--~~P~f~~~p~~~~~ 436 (1051)
T KOG3513|consen 359 PNPTVKWLKNGEPLEPAERDPRYKIDDGTLIISNVQESDSGVYQCIAENKYGTIYANAELKVLA--SAPVFPLNPVERKV 436 (1051)
T ss_pred CCCceEEeeCCeecCccCCCcceEEeCCEEEEEecccccCeEEEeeeecccceEeeeeEEEEEc--cCCCCCCCccceEE
Confidence 999999999999987432 47899999999999999999999999999999999985 567777766554
Q ss_pred EEecCCcEEEEEEeecCCCCcEEEEECCEEcCCCC
Q psy3045 232 TLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNAE 266 (267)
Q Consensus 232 ~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~l~~~~ 266 (267)
.+..|.++.|.|...+.|.|.+.|.++++.+..+.
T Consensus 437 ~a~~g~~v~i~C~~~asP~p~~~W~k~~~~~~~~~ 471 (1051)
T KOG3513|consen 437 MAVVGGTVTIDCKPFASPKPKVSWLKGGEKLLQSG 471 (1051)
T ss_pred EEEeCCeEEEeeccCCCCcceEEEEcCCcccccCc
Confidence 56789999999999999999999999998655544
No 2
>KOG3513|consensus
Probab=99.97 E-value=4e-29 Score=211.71 Aligned_cols=220 Identities=25% Similarity=0.424 Sum_probs=184.5
Q ss_pred cCCCcccCCCCceeEEecCCCeEEEEEEecc-----eeeeecccCcceeccccCCceEEEEeeEEEEeecccCCCeeEEE
Q psy3045 11 FKAPTFSSVSDIIRFKKPGGESFALLCEAQE-----NMWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYLC 85 (267)
Q Consensus 11 ~~~P~~~~~~~~~~~~v~~g~~v~l~C~~~~-----~~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C 85 (267)
..+|.+...+ .+..+..|++++|.|.+.+ +.|++++.... ......+.....+.|+|.+++..|+|.|+|
T Consensus 329 ~a~P~w~~~~--~d~~~~~gs~v~~eC~a~g~P~p~v~WlkNg~pl~---~~~r~~~~~i~~g~L~is~v~~~dsg~YQC 403 (1051)
T KOG3513|consen 329 YAPPYWLQKP--QDTEADTGSNVTLECKASGKPNPTVKWLKNGEPLE---PAERDPRYKIDDGTLIISNVQESDSGVYQC 403 (1051)
T ss_pred ecCchhhccc--ceeEecCCCCeEEEEEecCCCCCceEEeeCCeecC---ccCCCcceEEeCCEEEEEecccccCeEEEe
Confidence 4579999988 8999999999999999999 99999632211 112233477788999999999999999999
Q ss_pred EEEcCCCccEEEEEEEEEec-cccccCCceEEEeCCCceEEEEEeecCCCcccccCCceEEEecCCCEEEEeEeCCCCCc
Q psy3045 86 VVNNSVGGESVETVLTVTAP-LAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEGNPVK 164 (267)
Q Consensus 86 ~~~~~~~~~~~~~~l~V~~~-~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~ 164 (267)
.|+|.+|.....+.|.|... |.+...+... ...+..|..+.|.|...+.|.+
T Consensus 404 ~A~Nk~G~i~anA~L~V~a~~P~f~~~p~~~---------------------------~~~a~~g~~v~i~C~~~asP~p 456 (1051)
T KOG3513|consen 404 IAENKYGTIYANAELKVLASAPVFPLNPVER---------------------------KVMAVVGGTVTIDCKPFASPKP 456 (1051)
T ss_pred eeecccceEeeeeEEEEEccCCCCCCCccce---------------------------EEEEEeCCeEEEeeccCCCCcc
Confidence 99999999999999999874 5544444433 2267779999999999999999
Q ss_pred eEEEEECCccCCCC------CCCeEEeccCCCCCCeEEEEEEEcCCCCceEEEEEEEecccCCCeeecCCceeEEecCCc
Q psy3045 165 TISWMKDGKPVPDH------NEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPN 238 (267)
Q Consensus 165 ~~~W~~~~~~~~~~------~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v~~~~~~p~~~~~~~~~~~~~g~~ 238 (267)
.+.|.+++..+..+ .+++|.|.+++.+|+|.|+|.|+|..|.++....|.|. .++.+...|....+..|+.
T Consensus 457 ~~~W~k~~~~~~~~~r~~i~edGtL~I~n~t~~DaG~YtC~A~N~~G~a~~~~~L~Vk---d~tri~~~P~~~~v~~g~~ 533 (1051)
T KOG3513|consen 457 KVSWLKGGEKLLQSGRIRILEDGTLEISNVTRSDAGKYTCVAENKLGKAESTGNLIVK---DATRITLAPSNTDVKVGES 533 (1051)
T ss_pred eEEEEcCCcccccCceEEECCCCcEEecccCcccCcEEEEEEEcccCccceEEEEEEe---cCceEEeccchhhhccCce
Confidence 99999988854433 46899999999999999999999999999999999997 6888888898889999999
Q ss_pred EEEEEEeecCCC--CcEEEEECCEEcCCC
Q psy3045 239 YYFKCIASGNPT--PEISWYLDGKKLVNA 265 (267)
Q Consensus 239 ~~l~C~~~~~p~--~~i~W~~~~~~l~~~ 265 (267)
++|.|++.-.+. ..|.|++||..+...
T Consensus 534 v~l~Ce~shD~~ld~~f~W~~nG~~id~~ 562 (1051)
T KOG3513|consen 534 VTLTCEASHDPSLDITFTWKKNGRPIDFN 562 (1051)
T ss_pred EEEEeecccCCCcceEEEEEECCEEhhcc
Confidence 999999975554 489999999987643
No 3
>KOG4194|consensus
Probab=99.97 E-value=3.1e-29 Score=199.35 Aligned_cols=218 Identities=28% Similarity=0.502 Sum_probs=179.7
Q ss_pred CCcccCCCCceeEEecCCCeEEEEEEecc-------eeeeecccCcceeccccC------CceEE------EEeeEEEEe
Q psy3045 13 APTFSSVSDIIRFKKPGGESFALLCEAQE-------NMWFKFIEGSSRKVAVPL------NDRVK------QVSGTLIIK 73 (267)
Q Consensus 13 ~P~~~~~~~~~~~~v~~g~~v~l~C~~~~-------~~W~~~~~~~~~~~~~~~------~~~~~------~~~~~l~i~ 73 (267)
.|+|...| .......|++++|+|.+.+ +.|.++.+.... ..... ..|.. ...+.|++.
T Consensus 503 kpqI~~qP--e~~~al~g~nirftC~a~sssasplsi~WR~dnevq~r-v~ved~a~~~~q~r~~~~~e~~~~~~~L~L~ 579 (873)
T KOG4194|consen 503 KPQIVTQP--ETVSALIGENIRFTCNAYSSSASPLSIEWRKDNEVQPR-VDVEDFATFLSQNRNGTFGEREEYTAILHLD 579 (873)
T ss_pred CcceecCc--hHhhhhhccceEEEEEeccCCCCCceeEeeeccccCcc-cchhcchhhhhhhccCccchhhhhhheeeee
Confidence 48888877 8899999999999999988 999997542211 11111 11100 112469999
Q ss_pred ecccCCCeeEEEEEEcCCCc-cEEEEEEEEEeccccccCCceEEEeCCCceEEEEEeecCCCcccccCCceEEEecCCCE
Q psy3045 74 EAKVEDSGKYLCVVNNSVGG-ESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPA 152 (267)
Q Consensus 74 ~~~~~d~G~Y~C~~~~~~~~-~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~g~~v 152 (267)
+++-.|+|.|+|.++|..|. .+..+.++|...|.+...|... .+..|+..
T Consensus 580 nVt~td~grYQCVvtN~FGStysqk~KltV~~~PsFtktP~dl-----------------------------tl~tg~mA 630 (873)
T KOG4194|consen 580 NVTFTDEGRYQCVVTNHFGSTYSQKAKLTVNQAPSFTKTPEDL-----------------------------TLRTGQMA 630 (873)
T ss_pred eeecccCceEEEEEecccCcchhheeEEEeeccCccccCcccc-----------------------------eeecccce
Confidence 99999999999999999998 5788899999888877777665 77789999
Q ss_pred EEEeEeCCCCCceEEEEECCcc-CCC---------CCCCeEEeccCCCCCCeEEEEEEEcCCCCceEEEEEEEecccCCC
Q psy3045 153 QFTCKYEGNPVKTISWMKDGKP-VPD---------HNEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLGGRFDPP 222 (267)
Q Consensus 153 ~l~C~~~~~p~~~~~W~~~~~~-~~~---------~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v~~~~~~p 222 (267)
.|.|.+.|.|.|+|.|.|+|.. ++. .+...+-|.+++.+|.|.|+|.|.|.+|+.+..+.+.|. ..|
T Consensus 631 rl~CaAtG~P~PeIawqkdggtdFPAA~eRRl~Vmpedd~f~Itnvk~eD~GiYtC~A~n~AG~isanAtL~V~---e~p 707 (873)
T KOG4194|consen 631 RLECAATGHPRPEIAWQKDGGTDFPAARERRLHVMPEDDVFFITNVKIEDQGIYTCTAQNVAGQISANATLTVL---ETP 707 (873)
T ss_pred eeeeeccCCCCcceeehhcCCCCCchhhhheeeecCCCCEEEEecccccccceeEEeeeccccceeeceEEEEe---cCC
Confidence 9999999999999999998765 442 245678899999999999999999999999999999886 577
Q ss_pred eeecCCceeEEecCCcEEEEEEeecCCC-CcEEEEECCEEcCCC
Q psy3045 223 VIKESFSDETLNPGPNYYFKCIASGNPT-PEISWYLDGKKLVNA 265 (267)
Q Consensus 223 ~~~~~~~~~~~~~g~~~~l~C~~~~~p~-~~i~W~~~~~~l~~~ 265 (267)
.+..+..++.+..|+++.|.|.+.+.|+ |++.|+|++++|.-.
T Consensus 708 ~f~~PL~~~~V~~get~vlqC~a~~~~a~pr~~W~k~d~pil~t 751 (873)
T KOG4194|consen 708 SFSIPLEDQLVVVGETLVLQCLAEGAPADPRLEWFKEDKPILIT 751 (873)
T ss_pred cccccccceEEEecceEEEEEecCCCCCCccccccCCCCceEEe
Confidence 8888888899999999999999999888 999999999887543
No 4
>KOG4221|consensus
Probab=99.95 E-value=3.9e-26 Score=193.63 Aligned_cols=220 Identities=25% Similarity=0.458 Sum_probs=175.8
Q ss_pred CCcccCCCCceeEEecCCCeEEEEEEecc-----eeeeecccCcceeccccCCceEE-EEeeEEEEeecccCCCeeEEEE
Q psy3045 13 APTFSSVSDIIRFKKPGGESFALLCEAQE-----NMWFKFIEGSSRKVAVPLNDRVK-QVSGTLIIKEAKVEDSGKYLCV 86 (267)
Q Consensus 13 ~P~~~~~~~~~~~~v~~g~~v~l~C~~~~-----~~W~~~~~~~~~~~~~~~~~~~~-~~~~~l~i~~~~~~d~G~Y~C~ 86 (267)
.+.|...+ .+.++..|+++.|.|.+.+ +.|.++.. .+..+.|+. ..++.|.|..++..|.|.|+|.
T Consensus 140 ~~~f~~~~--~~~t~~~g~ta~f~c~vn~e~~p~i~w~kn~~------pl~~~~r~i~lpsG~L~I~~~qp~d~g~yrc~ 211 (1381)
T KOG4221|consen 140 LADFALQP--ESTTLLYGQTALFSCEVNAEPVPTIMWLKNDQ------PLPLDSRVIVLPSGALEISGLQPSDTGEYRCV 211 (1381)
T ss_pred cCccccCc--cceeEecCCcEEEEEEEcCccCceeEEecccc------cccCCCcEEEcCCCcEEecccccCCCceEEEE
Confidence 46677777 7899999999999999998 89999622 344455554 4678999999999999999999
Q ss_pred EEcCCCc-cEEEEEEEEEeccccccCCceEEEeCCCceEEEEEeecCCCcccccCCceEEEecCCCEEEEeEeCCCCCce
Q psy3045 87 VNNSVGG-ESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEGNPVKT 165 (267)
Q Consensus 87 ~~~~~~~-~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~ 165 (267)
+++.... .+..+.|+|...+....... +...+....+..|+.+.|.|.+.+.|.|.
T Consensus 212 vt~g~~~r~S~~a~ltv~s~~~~~~~~~-----------------------fl~~p~~~~v~~g~~v~leCvvs~~p~p~ 268 (1381)
T KOG4221|consen 212 VTGGASQRTSNEAELTVLSDPGALNKLV-----------------------FLDEPSNAVVVEGDDVVLECVVSGVPKPS 268 (1381)
T ss_pred EecCCcCCccceeEEEecCCccccccee-----------------------eecCCCccccccCCcEEEEEEecCCCCCc
Confidence 9987654 46777777773222111111 12234455788899999999999999999
Q ss_pred EEEEECCccCCCC-------CCCeEEeccCCCCCCeEEEEEEEcCCCCceEEEEEEEecccCCCeeecCCceeEEecCCc
Q psy3045 166 ISWMKDGKPVPDH-------NEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPN 238 (267)
Q Consensus 166 ~~W~~~~~~~~~~-------~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v~~~~~~p~~~~~~~~~~~~~g~~ 238 (267)
+.|.+|+..+.-+ ....|.|.+++..|+|.|+|.|.|......+...+.|. .+|.+...+......++..
T Consensus 269 v~Wlrng~~i~~ds~rivl~g~~slliS~a~~~dSg~YtC~Atn~~D~idasaev~V~---a~P~~~~~p~~l~A~e~~d 345 (1381)
T KOG4221|consen 269 VKWLRNGEKISVDSYRIVLVGGSSLLISNATDDDSGKYTCRATNTNDSIDASAEVTVL---APPGFTKAPTTLVAHESMD 345 (1381)
T ss_pred eEEeeCCeeeeecceEEEEecccceEEeccccccCceEEEEecCCCcccccceEEEEE---cCCCCCCCCcceeeeeccc
Confidence 9999999988644 35678899999999999999999976666777777776 5788888888877888999
Q ss_pred EEEEEEeecCCCCcEEEEECCEEcCCCC
Q psy3045 239 YYFKCIASGNPTPEISWYLDGKKLVNAE 266 (267)
Q Consensus 239 ~~l~C~~~~~p~~~i~W~~~~~~l~~~~ 266 (267)
+.|.|.+.|.|.|.+.|||||..+..++
T Consensus 346 ie~ec~~~g~p~p~v~w~kNgd~~ipsd 373 (1381)
T KOG4221|consen 346 IEFECPVSGKPIPTVRWYKNGDRIIPSD 373 (1381)
T ss_pred eeEeCCCCCCCcceEEEEecCcccCccc
Confidence 9999999999999999999998876543
No 5
>PHA02785 IL-beta-binding protein; Provisional
Probab=99.94 E-value=7.5e-25 Score=171.73 Aligned_cols=205 Identities=20% Similarity=0.362 Sum_probs=145.1
Q ss_pred eeEEecCCCeEEEEEEe-----cc-----eeeeecccCcceeccccCCceEEE-EeeEEEEeecccCCCeeEEEEEEcCC
Q psy3045 23 IRFKKPGGESFALLCEA-----QE-----NMWFKFIEGSSRKVAVPLNDRVKQ-VSGTLIIKEAKVEDSGKYLCVVNNSV 91 (267)
Q Consensus 23 ~~~~v~~g~~v~l~C~~-----~~-----~~W~~~~~~~~~~~~~~~~~~~~~-~~~~l~i~~~~~~d~G~Y~C~~~~~~ 91 (267)
....+.+|+.+.|.|.+ .+ +.|+|++..... .... .+..|.|.++..+|+|.|+|.+.|..
T Consensus 34 ~~~~~~~ge~~~l~C~~~~~~~~g~p~~~i~W~K~g~~~~~--------~~~~~~g~~l~i~~~~~~DsG~Y~C~a~N~~ 105 (326)
T PHA02785 34 ASFMELENEPVILPCPQINTLSSGYNILDILWEKRGADNDR--------IIPIDNGSNMLILNPTQSDSGIYICITKNET 105 (326)
T ss_pred chhhhhcCCCEEEECCCccccccCCCCceEEEEECCCccce--------EEEccCCceEEEcccCcccCeEEEEEEECCC
Confidence 34567799999999997 33 999996422111 1111 22358899999999999999999998
Q ss_pred CccEEEEEEEEEeccccccCCceEEEeCCCceEEEEEeecCCCcccccCCceEEEecCCCEEEEeE-----eCCCCCceE
Q psy3045 92 GGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCK-----YEGNPVKTI 166 (267)
Q Consensus 92 ~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~-----~~~~p~~~~ 166 (267)
+.....+.|.|........... .....+.+|..+.|.|. ..+.|.+.+
T Consensus 106 g~~~~s~~L~V~~~~~~~~~~~---------------------------~~~~~~~~g~~~~i~C~~~~~~~~~~~~~~i 158 (326)
T PHA02785 106 YCDMMSLNLTIVSVSESNIDLI---------------------------SYPQIVNERSTGEMVCPNINAFIASNVNADI 158 (326)
T ss_pred cceEEEEEEEEEecCCCcccee---------------------------eccceecccCcEEEECCChhhcccCCCCceE
Confidence 8877778888875432111110 01124567899999997 235688899
Q ss_pred EEEECCccCCC-----CCCCeEEeccCCCCCCeEEEEEEEcCCCCceE----EEEEEEecccCCCeeecCCceeEEecCC
Q psy3045 167 SWMKDGKPVPD-----HNEPVFRIDSVRKEDKGMYQCVIRNEQESAQA----SGELKLGGRFDPPVIKESFSDETLNPGP 237 (267)
Q Consensus 167 ~W~~~~~~~~~-----~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~----~~~l~v~~~~~~p~~~~~~~~~~~~~g~ 237 (267)
.|+++.. +.. ..+..|.|.+++.+|.|.|+|.+.|..+.... ...+.|.....||.+. .+....+..|+
T Consensus 159 ~W~k~~~-~~~~r~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~~~~~~t~~v~l~V~~~~~pp~~~-~p~~~~~~~G~ 236 (326)
T PHA02785 159 IWSGHRR-LRNKRLKQRTPGIITIEDVRKNDAGYYTCVLKYIYGDKTYNVTRIVKLEVRDRIIPPTMQ-LPEGVVTSIGS 236 (326)
T ss_pred EEccCCc-cCCcceEecCCCeEEEeecChhhCeEEEEEEEeccCCEEEeEEEEEEEEEeccCCCceec-CCCcEEecCCC
Confidence 9988653 222 12468999999999999999999998776543 2334444333455543 34566778899
Q ss_pred cEEEEEEeecCCCC---cEEEEECCEEcCC
Q psy3045 238 NYYFKCIASGNPTP---EISWYLDGKKLVN 264 (267)
Q Consensus 238 ~~~l~C~~~~~p~~---~i~W~~~~~~l~~ 264 (267)
.+.|.|.+.|.|++ .+.|++||+.|.+
T Consensus 237 ~v~L~C~a~g~P~~~~~~v~W~kng~~i~~ 266 (326)
T PHA02785 237 NLTIACRVSLRPPTTDADVFWISNGMYYEE 266 (326)
T ss_pred cEEEEEEEECCCCCCCceEEEEECCEECCC
Confidence 99999999998874 8999999998854
No 6
>KOG4222|consensus
Probab=99.91 E-value=1.7e-23 Score=176.90 Aligned_cols=212 Identities=27% Similarity=0.470 Sum_probs=179.1
Q ss_pred CCcccCCCCceeEEecCCCeEEEEEEecc------eeeeecccCcceeccccCCceEEEEeeEEEEeecccCCCeeEEEE
Q psy3045 13 APTFSSVSDIIRFKKPGGESFALLCEAQE------NMWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYLCV 86 (267)
Q Consensus 13 ~P~~~~~~~~~~~~v~~g~~v~l~C~~~~------~~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~ 86 (267)
+-.|.+.+ ++..+..|+.+.|.|.-.. +.|.|+++... ......+....++.|.|.++...|+|+|.|.
T Consensus 131 rddfrv~p--rd~~~a~ge~avlEcgpP~ghpeptvSw~Kdg~pl~---~~~~~~~~lisgG~LlIsnvrksD~GtY~CV 205 (1281)
T KOG4222|consen 131 RDDFRVSP--RDVQAAVGEEAVLECGPPRGHPEPTVSWVKDGKPLD---HYDVPIIALISGGNLLISNVRKSDEGTYACV 205 (1281)
T ss_pred chhcccCc--ccccccccceeEEeccCCCCCCCCcceeecCCCccc---cccceeEEEecCCcEEEeccccCCCceeeee
Confidence 34566666 6789999999999998666 99999744322 1112233335677899999999999999999
Q ss_pred EEcCCCc-cEEEEEEEEEeccccccCCceEEEeCCCceEEEEEeecCCCcccccCCceEEEecCCCEEEEeEeCCCCCce
Q psy3045 87 VNNSVGG-ESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEGNPVKT 165 (267)
Q Consensus 87 ~~~~~~~-~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~ 165 (267)
++|..|. .+...+|.|.+.+.+...+... .+..|..+.+.|.+.|.|.|.
T Consensus 206 atNmvG~ReS~~A~lsv~e~P~f~~rp~~~-----------------------------~v~~g~~~~f~c~v~GdP~P~ 256 (1281)
T KOG4222|consen 206 ATNMVGERESIPARLSVQEKPWFWKRPKDL-----------------------------AVLVGAAAEFDCRVGGDPQPT 256 (1281)
T ss_pred ecccccccccccceeeeccCCccccccccc-----------------------------eeecccccccccccCCCCCCc
Confidence 9999998 6788899999988877776655 788899999999999999999
Q ss_pred EEEEECCccCCCC------CCCeEEeccCCCCCCeEEEEEEEcCCCCceEEEEEEEecccCCCeeecCCceeEEecCCcE
Q psy3045 166 ISWMKDGKPVPDH------NEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNY 239 (267)
Q Consensus 166 ~~W~~~~~~~~~~------~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v~~~~~~p~~~~~~~~~~~~~g~~~ 239 (267)
+.|-+++..++.. ++.+|.|..++..|.|+|.|.++|..|.......+.|+ .+|.+...+.+..+..|..+
T Consensus 257 Vrwkk~~~~~P~~ry~i~~d~qtl~i~r~tp~deg~y~C~a~n~vG~l~asa~ltV~---apP~f~kkp~dq~v~lg~~v 333 (1281)
T KOG4222|consen 257 VRWKKDDPSLPRSRYSILDDTQTLRIDRVTPTDEGTYVCPAENLVGGLEASATLTVQ---APPSFGKKPRDQKVALGGTV 333 (1281)
T ss_pred eeeeccCCCCCccceeeeeccccccccccCCCcccceeeeccccccccccccceEEe---cCcccccccCccccccCceE
Confidence 9999988777643 45788899999999999999999999999999999997 68899998888899999999
Q ss_pred EEEEEeecCCCCcEEEEECCEE
Q psy3045 240 YFKCIASGNPTPEISWYLDGKK 261 (267)
Q Consensus 240 ~l~C~~~~~p~~~i~W~~~~~~ 261 (267)
+|.|.+.|+|+|.+.|.+.|..
T Consensus 334 t~pc~~~gnP~PavfW~keg~q 355 (1281)
T KOG4222|consen 334 TFPCETLGNPPPAVFWLKEGSQ 355 (1281)
T ss_pred EeeeecCCCCCcceEEeccCcc
Confidence 9999999999999999988754
No 7
>KOG4221|consensus
Probab=99.88 E-value=6e-21 Score=162.64 Aligned_cols=217 Identities=24% Similarity=0.439 Sum_probs=161.3
Q ss_pred CCCcccCCCCceeEEecCCCeEEEEEEecc-------eeeeecccCcceeccccCCce-EEEEeeEEEEeeccc-----C
Q psy3045 12 KAPTFSSVSDIIRFKKPGGESFALLCEAQE-------NMWFKFIEGSSRKVAVPLNDR-VKQVSGTLIIKEAKV-----E 78 (267)
Q Consensus 12 ~~P~~~~~~~~~~~~v~~g~~v~l~C~~~~-------~~W~~~~~~~~~~~~~~~~~~-~~~~~~~l~i~~~~~-----~ 78 (267)
.+-.|...| .+ +.+|.++.|.|.... +.|.+|+... ...++.+ ....+++|.|.++.. .
T Consensus 40 ~~~~f~~ep--~d--~~~~~svlLecs~~~~~~~~~~i~wkkDg~~l----~e~~d~~~~~LsNgSl~i~~v~~~kh~~~ 111 (1381)
T KOG4221|consen 40 TPLQFLLEP--SD--AMEGSSVLLECSAYAAGGTSVKIEWKKDGSQL----NEVYDDRRQLLSNGSLYISSVLASKHNKV 111 (1381)
T ss_pred CcceEEecc--cc--cccccceEEeccccccCCCCeeEEEccCchhh----hhhhhhHHhhccCCceeEeeecccccccc
Confidence 345677776 33 389999999999776 8999863321 1222233 334677899888877 7
Q ss_pred CCeeEEEEEEcC-CCc-cEEEEEEEEEeccccccCCceEEEeCCCceEEEEEeecCCCcccccCCceEEEecCCCEEEEe
Q psy3045 79 DSGKYLCVVNNS-VGG-ESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTC 156 (267)
Q Consensus 79 d~G~Y~C~~~~~-~~~-~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~g~~v~l~C 156 (267)
|+|.|+|.++-. .|. .+..+.+.+.....+...+... .+..|+++.|.|
T Consensus 112 ~eg~Yqc~atv~~~gsi~Sr~a~v~~a~~~~f~~~~~~~-----------------------------t~~~g~ta~f~c 162 (1381)
T KOG4221|consen 112 DEGVYQCLATVEDVGSILSRTAKVALAGLADFALQPEST-----------------------------TLLYGQTALFSC 162 (1381)
T ss_pred cCceEEEEEEccccceeecceEEEEecccCccccCccce-----------------------------eEecCCcEEEEE
Confidence 899999999865 444 4666677776655555444443 788899999999
Q ss_pred EeCCCCCceEEEEECCccCCCC------CCCeEEeccCCCCCCeEEEEEEEcCCCCce-EEEEEEEeccc---CCCeeec
Q psy3045 157 KYEGNPVKTISWMKDGKPVPDH------NEPVFRIDSVRKEDKGMYQCVIRNEQESAQ-ASGELKLGGRF---DPPVIKE 226 (267)
Q Consensus 157 ~~~~~p~~~~~W~~~~~~~~~~------~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~-~~~~l~v~~~~---~~p~~~~ 226 (267)
.+.+.|.+.+.|.+|..++..+ .+..|.|..+...|.|.|+|.+++...... ....|.+.... ..-.|..
T Consensus 163 ~vn~e~~p~i~w~kn~~pl~~~~r~i~lpsG~L~I~~~qp~d~g~yrc~vt~g~~~r~S~~a~ltv~s~~~~~~~~~fl~ 242 (1381)
T KOG4221|consen 163 EVNAEPVPTIMWLKNDQPLPLDSRVIVLPSGALEISGLQPSDTGEYRCVVTGGASQRTSNEAELTVLSDPGALNKLVFLD 242 (1381)
T ss_pred EEcCccCceeEEecccccccCCCcEEEcCCCcEEecccccCCCceEEEEEecCCcCCccceeEEEecCCcccccceeeec
Confidence 9999888899999999987654 357899999999999999999998764432 24555554111 1123455
Q ss_pred CCceeEEecCCcEEEEEEeecCCCCcEEEEECCEEcCCC
Q psy3045 227 SFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNA 265 (267)
Q Consensus 227 ~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~l~~~ 265 (267)
.+....+.+|+.+.|+|.+.|.|.|.|.|++||+.|..+
T Consensus 243 ~p~~~~v~~g~~v~leCvvs~~p~p~v~Wlrng~~i~~d 281 (1381)
T KOG4221|consen 243 EPSNAVVVEGDDVVLECVVSGVPKPSVKWLRNGEKISVD 281 (1381)
T ss_pred CCCccccccCCcEEEEEEecCCCCCceEEeeCCeeeeec
Confidence 667778899999999999999999999999999988755
No 8
>PHA02826 IL-1 receptor-like protein; Provisional
Probab=99.87 E-value=9.5e-21 Score=139.97 Aligned_cols=148 Identities=21% Similarity=0.326 Sum_probs=107.1
Q ss_pred eeEEecCCCeEEEEEEec-------------c---eeeeecccCccee----c--ccc-CCceEEEEeeEEEEeecccCC
Q psy3045 23 IRFKKPGGESFALLCEAQ-------------E---NMWFKFIEGSSRK----V--AVP-LNDRVKQVSGTLIIKEAKVED 79 (267)
Q Consensus 23 ~~~~v~~g~~v~l~C~~~-------------~---~~W~~~~~~~~~~----~--~~~-~~~~~~~~~~~l~i~~~~~~d 79 (267)
..+.+.+|++|.|.|.+. . +.|+|++...... . ... ...+....+.+|+|.+++.+|
T Consensus 30 ~~~~v~eGe~v~L~C~~~~~~~~~~~~~~~~~~~~V~W~k~~s~~~v~~~~~~~~~~~i~~~~~~~r~~~L~I~~v~~~D 109 (227)
T PHA02826 30 TPVYAKFGDPMVLLCTGKHYKKSIFFDKTFITSYNVTWSKTDSLAFVRDSGARTKIKKITHNEIGDRSENLWIGNVINID 109 (227)
T ss_pred ceEEecCCCCEEEEccccccccccccccccCCCccEEEEeCCeEEEEEcCCCccccccccccceecCCCeEEECCCChHH
Confidence 568899999999999951 2 9999963210000 0 000 011222234689999999999
Q ss_pred CeeEEEEEEcCCCccEEEEEEEEEeccccccCCceEEEeCCCceEEEEEeecCCCcccccCCceEEEecCCCEEEEeEeC
Q psy3045 80 SGKYLCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYE 159 (267)
Q Consensus 80 ~G~Y~C~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~ 159 (267)
+|.|+|.+.|..+.....+.|.|.... . ...+.+|+.+.|.|.+.
T Consensus 110 sG~Y~C~a~N~~~~~~~~i~L~V~~~~------~-----------------------------~~~~~~G~~v~L~C~~~ 154 (227)
T PHA02826 110 EGIYICTISSGNICEESTIRLTFDSGT------I-----------------------------NYQFNSGKDSKLHCYGT 154 (227)
T ss_pred CEEEEEEEEECCcceEEEEEEEEecCC------c-----------------------------cceEecCCCEEEEeeCC
Confidence 999999999988777777777774211 0 11456799999999975
Q ss_pred C-----CCCceEEEEECCccCCCC-------CCCeEEeccCCCCCCeEEEEEEEcCCC
Q psy3045 160 G-----NPVKTISWMKDGKPVPDH-------NEPVFRIDSVRKEDKGMYQCVIRNEQE 205 (267)
Q Consensus 160 ~-----~p~~~~~W~~~~~~~~~~-------~~~~l~i~~~~~~d~g~y~C~~~~~~~ 205 (267)
+ .|.|.++|+|++.++... ....|.|.+++.+|+|.|+|.|.....
T Consensus 155 ~~~~~~~p~p~I~WyKng~~l~~~~r~~~~~~~~~L~I~~V~~~DsG~YtC~a~~~~~ 212 (227)
T PHA02826 155 DGISSTFKDYTLTWYKNGNIVLYTDRIQLRNNNSTLVIKSATHDDSGIYTCNLRFNKN 212 (227)
T ss_pred CCccccCCCceEEEEECCEECCCCCCEEEeCCCCEEEECcCCHHhCEEEEEEEEEeEC
Confidence 3 357899999999987643 345899999999999999999987643
No 9
>KOG4222|consensus
Probab=99.85 E-value=4.9e-21 Score=162.20 Aligned_cols=222 Identities=27% Similarity=0.450 Sum_probs=177.0
Q ss_pred ccccCCCcccCCCCceeEEecCCCeEEEEEEecc-----eeeeecccCcceeccccCCceEEEEeeEEEEeecccCCCee
Q psy3045 8 PVGFKAPTFSSVSDIIRFKKPGGESFALLCEAQE-----NMWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGK 82 (267)
Q Consensus 8 ~~~~~~P~~~~~~~~~~~~v~~g~~v~l~C~~~~-----~~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~ 82 (267)
+...++|.|...+ ....+.+|+.+.+.|.+.+ +.|.+++.... ....++..++.+|.|.+++..|+|.
T Consensus 220 lsv~e~P~f~~rp--~~~~v~~g~~~~f~c~v~GdP~P~Vrwkk~~~~~P-----~~ry~i~~d~qtl~i~r~tp~deg~ 292 (1281)
T KOG4222|consen 220 LSVQEKPWFWKRP--KDLAVLVGAAAEFDCRVGGDPQPTVRWKKDDPSLP-----RSRYSILDDTQTLRIDRVTPTDEGT 292 (1281)
T ss_pred eeeccCCcccccc--ccceeecccccccccccCCCCCCceeeeccCCCCC-----ccceeeeeccccccccccCCCcccc
Confidence 4446689999998 8999999999999999999 99988532211 1233344556799999999999999
Q ss_pred EEEEEEcCCCccEEEEEEEEEeccccccCCceEEEeCCCceEEEEEeecCCCcccccCCceEEEecCCCEEEEeEeCCCC
Q psy3045 83 YLCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEGNP 162 (267)
Q Consensus 83 Y~C~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p 162 (267)
|.|.+.|..|.......++|..++.+...+... .+..|..++|.|.+.|.|
T Consensus 293 y~C~a~n~vG~l~asa~ltV~apP~f~kkp~dq-----------------------------~v~lg~~vt~pc~~~gnP 343 (1281)
T KOG4222|consen 293 YVCPAENLVGGLEASATLTVQAPPSFGKKPRDQ-----------------------------KVALGGTVTFPCETLGNP 343 (1281)
T ss_pred eeeeccccccccccccceEEecCcccccccCcc-----------------------------ccccCceEEeeeecCCCC
Confidence 999999999999999999999988876665554 777899999999999999
Q ss_pred CceEEEEECCccCC--------C------CCCCeEEeccCCCCCCeEEEEEEEcCCCCceEEEEEEEe---cc-cCCCee
Q psy3045 163 VKTISWMKDGKPVP--------D------HNEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLG---GR-FDPPVI 224 (267)
Q Consensus 163 ~~~~~W~~~~~~~~--------~------~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v~---~~-~~~p~~ 224 (267)
++.+.|.+.|...- . ....+|+|.++...|.|.|.|...+..+.......+.+. .. ..+|.+
T Consensus 344 ~PavfW~keg~q~llf~~~p~~~~~r~svs~~g~L~it~v~~~d~g~Yvcq~~~~~~ss~~~a~~~qt~~~~~~rPpp~i 423 (1281)
T KOG4222|consen 344 PPAVFWLKEGSQDLLFSASPPSSNGRGSVSPTGTLTITNVRQSDEGYYVCQTQTSAGSSLTKAYLEQTDVLTDSRPPPII 423 (1281)
T ss_pred CcceEEeccCcceecccCCCCCcCccceecCCCCcccccccccccceEeecccccccccccceeEEEEeeeccCCCCcee
Confidence 99999998764321 0 123689999999999999999976655544332222221 11 467788
Q ss_pred ecCCceeEEecCCcEEEEEEeecCCCCcEEEEECCEEcCCC
Q psy3045 225 KESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNA 265 (267)
Q Consensus 225 ~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~l~~~ 265 (267)
...+.++++..+..+.|.|.+.+.|-+.+.|+++|-.+...
T Consensus 424 ~~g~~nQtl~v~s~a~l~c~atg~P~p~i~wl~dg~~v~~~ 464 (1281)
T KOG4222|consen 424 EQGPANQTLPVGSTASLPCSATGAPTPNISWLKDGCNVMNP 464 (1281)
T ss_pred eecccccccccCcccccChhhhCCCCCCchhhhcccccccC
Confidence 88889999999999999999999999999999999776544
No 10
>KOG4194|consensus
Probab=99.85 E-value=4.8e-20 Score=147.53 Aligned_cols=176 Identities=23% Similarity=0.371 Sum_probs=141.7
Q ss_pred CcccccCCCcccCCCCceeEEecCCCeEEEEEEecc-----eeeeecccCcceeccccCCceEEE--EeeEEEEeecccC
Q psy3045 6 LKPVGFKAPTFSSVSDIIRFKKPGGESFALLCEAQE-----NMWFKFIEGSSRKVAVPLNDRVKQ--VSGTLIIKEAKVE 78 (267)
Q Consensus 6 ~~~~~~~~P~~~~~~~~~~~~v~~g~~v~l~C~~~~-----~~W~~~~~~~~~~~~~~~~~~~~~--~~~~l~i~~~~~~ 78 (267)
-++...+.|.|...| .+.++..|+.+.|.|.++| +.|.|++... .+.--..|++. ....+.|.++..+
T Consensus 605 ~KltV~~~PsFtktP--~dltl~tg~mArl~CaAtG~P~PeIawqkdggtd---FPAA~eRRl~Vmpedd~f~Itnvk~e 679 (873)
T KOG4194|consen 605 AKLTVNQAPSFTKTP--EDLTLRTGQMARLECAATGHPRPEIAWQKDGGTD---FPAARERRLHVMPEDDVFFITNVKIE 679 (873)
T ss_pred eEEEeeccCccccCc--ccceeecccceeeeeeccCCCCcceeehhcCCCC---CchhhhheeeecCCCCEEEEeccccc
Confidence 344556789999999 8999999999999999999 9999963211 11112334433 4567999999999
Q ss_pred CCeeEEEEEEcCCCccEEEEEEEEEeccccccCCceEEEeCCCceEEEEEeecCCCcccccCCceEEEecCCCEEEEeEe
Q psy3045 79 DSGKYLCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKY 158 (267)
Q Consensus 79 d~G~Y~C~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~~ 158 (267)
|.|.|+|.|.|..|+.+....|.|.+.|.+..+.... .+..|+.+.|.|.+
T Consensus 680 D~GiYtC~A~n~AG~isanAtL~V~e~p~f~~PL~~~-----------------------------~V~~get~vlqC~a 730 (873)
T KOG4194|consen 680 DQGIYTCTAQNVAGQISANATLTVLETPSFSIPLEDQ-----------------------------LVVVGETLVLQCLA 730 (873)
T ss_pred ccceeEEeeeccccceeeceEEEEecCCcccccccce-----------------------------EEEecceEEEEEec
Confidence 9999999999999999999999999988776665444 77789999999999
Q ss_pred CCCCC-ceEEEEECCccCCC-------CCCCeEEeccCCCCCCeEEEEEEEcCCCCceEEEEEEE
Q psy3045 159 EGNPV-KTISWMKDGKPVPD-------HNEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKL 215 (267)
Q Consensus 159 ~~~p~-~~~~W~~~~~~~~~-------~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v 215 (267)
.+.|. |.+.|+|+++++.- ..++-+++.....+|+|.|+|+..+..+.......+.+
T Consensus 731 ~~~~a~pr~~W~k~d~pil~t~rh~f~d~dQllvv~~~~~~daG~yTcem~~~~~~~~~~i~l~~ 795 (873)
T KOG4194|consen 731 EGAPADPRLEWFKEDKPILITERHTFPDGDQLLVVKENLVEDAGIYTCEMSNTLGTERIHICLLV 795 (873)
T ss_pred CCCCCCccccccCCCCceEEeecccCCCCCeEEEEEehhhhhcceEEEEEEeeccceeeEEEEEE
Confidence 99886 99999999988742 34577888889999999999999998876665555544
No 11
>PHA02785 IL-beta-binding protein; Provisional
Probab=99.80 E-value=1e-17 Score=131.68 Aligned_cols=148 Identities=20% Similarity=0.409 Sum_probs=103.5
Q ss_pred eeEEecCCCeEEEEEEe-----cc-----eeeeecccCcceeccccCCceEEE-EeeEEEEeecccCCCeeEEEEEEcCC
Q psy3045 23 IRFKKPGGESFALLCEA-----QE-----NMWFKFIEGSSRKVAVPLNDRVKQ-VSGTLIIKEAKVEDSGKYLCVVNNSV 91 (267)
Q Consensus 23 ~~~~v~~g~~v~l~C~~-----~~-----~~W~~~~~~~~~~~~~~~~~~~~~-~~~~l~i~~~~~~d~G~Y~C~~~~~~ 91 (267)
.+..+.+|..+.|.|.. .+ ++|+++. . + ...++.. .++.|.|.+++.+|+|.|+|.+.|..
T Consensus 129 ~~~~~~~g~~~~i~C~~~~~~~~~~~~~~i~W~k~~--~-----~-~~~r~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~ 200 (326)
T PHA02785 129 YPQIVNERSTGEMVCPNINAFIASNVNADIIWSGHR--R-----L-RNKRLKQRTPGIITIEDVRKNDAGYYTCVLKYIY 200 (326)
T ss_pred ccceecccCcEEEECCChhhcccCCCCceEEEccCC--c-----c-CCcceEecCCCeEEEeecChhhCeEEEEEEEecc
Confidence 34567799999999972 12 9998741 1 1 2233332 35689999999999999999999988
Q ss_pred CccEEE----EEEEEEeccccccCCceEEEeCCCceEEEEEeecCCCcccccCCceEEEecCCCEEEEeEeCCCCC---c
Q psy3045 92 GGESVE----TVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEGNPV---K 164 (267)
Q Consensus 92 ~~~~~~----~~l~V~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~---~ 164 (267)
+..... +.|.|..+. ..+.. ..+....+..|+.+.|.|.+.+.|. +
T Consensus 201 g~~~~~~t~~v~l~V~~~~---~pp~~------------------------~~p~~~~~~~G~~v~L~C~a~g~P~~~~~ 253 (326)
T PHA02785 201 GDKTYNVTRIVKLEVRDRI---IPPTM------------------------QLPEGVVTSIGSNLTIACRVSLRPPTTDA 253 (326)
T ss_pred CCEEEeEEEEEEEEEeccC---CCcee------------------------cCCCcEEecCCCcEEEEEEEECCCCCCCc
Confidence 765332 334443211 11100 1123346777999999999998875 4
Q ss_pred eEEEEECCccCCCCC----------------------CCeEEeccCCCCCCeEEEEEEEcCCC
Q psy3045 165 TISWMKDGKPVPDHN----------------------EPVFRIDSVRKEDKGMYQCVIRNEQE 205 (267)
Q Consensus 165 ~~~W~~~~~~~~~~~----------------------~~~l~i~~~~~~d~g~y~C~~~~~~~ 205 (267)
.+.|++||..+...+ ...|.|.+++.+|.|.|+|.|.|..+
T Consensus 254 ~v~W~kng~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~V~~~D~G~Y~C~A~n~~~ 316 (326)
T PHA02785 254 DVFWISNGMYYEEDDEDGDGRISVANKIYTTDKRRVITSRLNINPVKEEDATTFTCMAFTIPS 316 (326)
T ss_pred eEEEEECCEECCCcCCCCceeEEEecCccccccceeeeEEEEECCcchhcCeeeEEEEEeccC
Confidence 899999998764210 24689999999999999999999773
No 12
>PHA02826 IL-1 receptor-like protein; Provisional
Probab=99.70 E-value=8.1e-16 Score=113.87 Aligned_cols=115 Identities=17% Similarity=0.378 Sum_probs=87.9
Q ss_pred eEEEecCCCEEEEeEeCCCC-----------CceEEEEECCccC-----------C-------CCCCCeEEeccCCCCCC
Q psy3045 143 VQTIDFGRPAQFTCKYEGNP-----------VKTISWMKDGKPV-----------P-------DHNEPVFRIDSVRKEDK 193 (267)
Q Consensus 143 ~~~~~~g~~v~l~C~~~~~p-----------~~~~~W~~~~~~~-----------~-------~~~~~~l~i~~~~~~d~ 193 (267)
...+.+|+++.|.|.+.+.+ .+++.|+|++... . ......|.|.+++.+|+
T Consensus 31 ~~~v~eGe~v~L~C~~~~~~~~~~~~~~~~~~~~V~W~k~~s~~~v~~~~~~~~~~~i~~~~~~~r~~~L~I~~v~~~Ds 110 (227)
T PHA02826 31 PVYAKFGDPMVLLCTGKHYKKSIFFDKTFITSYNVTWSKTDSLAFVRDSGARTKIKKITHNEIGDRSENLWIGNVINIDE 110 (227)
T ss_pred eEEecCCCCEEEEccccccccccccccccCCCccEEEEeCCeEEEEEcCCCccccccccccceecCCCeEEECCCChHHC
Confidence 34788999999999986643 4589999987431 0 11246899999999999
Q ss_pred eEEEEEEEcCCCCceEEEEEEEecccCCCeeecCCceeEEecCCcEEEEEEee-----cCCCCcEEEEECCEEcCCCC
Q psy3045 194 GMYQCVIRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIAS-----GNPTPEISWYLDGKKLVNAE 266 (267)
Q Consensus 194 g~y~C~~~~~~~~~~~~~~l~v~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~-----~~p~~~i~W~~~~~~l~~~~ 266 (267)
|.|+|.|.|..+....+..|.|.. ++ .+..+.+|+.+.|.|.+. +.|.|.|.|||||+.|..++
T Consensus 111 G~Y~C~a~N~~~~~~~~i~L~V~~---~~------~~~~~~~G~~v~L~C~~~~~~~~~~p~p~I~WyKng~~l~~~~ 179 (227)
T PHA02826 111 GIYICTISSGNICEESTIRLTFDS---GT------INYQFNSGKDSKLHCYGTDGISSTFKDYTLTWYKNGNIVLYTD 179 (227)
T ss_pred EEEEEEEEECCcceEEEEEEEEec---CC------ccceEecCCCEEEEeeCCCCccccCCCceEEEEECCEECCCCC
Confidence 999999999887777677666631 11 234567899999999986 34678999999999987554
No 13
>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has
Probab=99.68 E-value=8e-16 Score=99.19 Aligned_cols=82 Identities=28% Similarity=0.439 Sum_probs=70.9
Q ss_pred CceEEEecCCCEEEEeEeCCCCCceEEEEECCccCCCC---------CCCeEEeccCCCCCCeEEEEEEEcCCCCceEEE
Q psy3045 141 PTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDH---------NEPVFRIDSVRKEDKGMYQCVIRNEQESAQASG 211 (267)
Q Consensus 141 ~~~~~~~~g~~v~l~C~~~~~p~~~~~W~~~~~~~~~~---------~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~ 211 (267)
+....+..|+.+.|.|.+.|.|.+.+.|+|++.++..+ ..+.|.|..+..+|+|.|+|.|.|..|....++
T Consensus 7 p~~~~v~~G~~v~l~C~~~G~p~p~v~W~kdg~~l~~~~~~~~~~~~~~s~L~I~~~~~~D~G~Ytc~a~N~~G~~~~~~ 86 (98)
T cd05762 7 PEDMKVRAGESVELFCKVTGTQPITCTWMKFRKQIQEGEGIKIENTENSSKLTITEGQQEHCGCYTLEVENKLGSRQAQV 86 (98)
T ss_pred CcCEEEECCCEEEEEEEEcccCCCceEEEECCEEecCCCcEEEEecCCeeEEEECCCChhhCEEEEEEEEcCCCceeEEE
Confidence 44558899999999999999999999999999988633 246799999999999999999999999999999
Q ss_pred EEEEecccCCC
Q psy3045 212 ELKLGGRFDPP 222 (267)
Q Consensus 212 ~l~v~~~~~~p 222 (267)
.|.|.....||
T Consensus 87 ~l~V~~~P~pP 97 (98)
T cd05762 87 NLTVVDKPDPP 97 (98)
T ss_pred EEEEecCCCCC
Confidence 99998654443
No 14
>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1. Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.67 E-value=2.1e-15 Score=95.35 Aligned_cols=76 Identities=25% Similarity=0.433 Sum_probs=65.6
Q ss_pred CCceEEEecCCCEEEEeEeCCCCCceEEEEECCccCCCC-----CCCeEEeccCCCCCCeEEEEEEEcCCCCceEEEEEE
Q psy3045 140 EPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDH-----NEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELK 214 (267)
Q Consensus 140 ~~~~~~~~~g~~v~l~C~~~~~p~~~~~W~~~~~~~~~~-----~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~ 214 (267)
.+.+..+.+|+.+.|.|.+.|.|.|.+.|++++..+... .+..|.|.++..+|+|.|+|.|.|..|....+..|.
T Consensus 7 ~~~~~~~~~G~~v~l~C~~~G~P~P~v~W~k~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~ 86 (88)
T cd05851 7 KFKDTYALKGQNVTLECFALGNPVPVIRWRKILEPMPATAEISMSGAVLKIFNIQPEDEGTYECEAENIKGKDKHQARVY 86 (88)
T ss_pred ccccEEEeCCCcEEEEEEecccCCCEEEEEECCcCCCCCCEEecCCCEEEECcCChhhCEEEEEEEEcCCCceEEEEEEE
Confidence 344568889999999999999999999999998877543 345799999999999999999999999988887776
Q ss_pred E
Q psy3045 215 L 215 (267)
Q Consensus 215 v 215 (267)
|
T Consensus 87 V 87 (88)
T cd05851 87 V 87 (88)
T ss_pred E
Confidence 5
No 15
>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has
Probab=99.63 E-value=4.4e-15 Score=95.72 Aligned_cols=86 Identities=28% Similarity=0.418 Sum_probs=70.3
Q ss_pred CcccCCCCceeEEecCCCeEEEEEEecc-----eeeeecccCcceeccccCCceEEE----EeeEEEEeecccCCCeeEE
Q psy3045 14 PTFSSVSDIIRFKKPGGESFALLCEAQE-----NMWFKFIEGSSRKVAVPLNDRVKQ----VSGTLIIKEAKVEDSGKYL 84 (267)
Q Consensus 14 P~~~~~~~~~~~~v~~g~~v~l~C~~~~-----~~W~~~~~~~~~~~~~~~~~~~~~----~~~~l~i~~~~~~d~G~Y~ 84 (267)
|.|...+ .+..+..|+++.|.|.+.| +.|+|++... ....++.. ..+.|.|.++...|+|.|+
T Consensus 1 p~~~~~p--~~~~v~~G~~v~l~C~~~G~p~p~v~W~kdg~~l------~~~~~~~~~~~~~~s~L~I~~~~~~D~G~Yt 72 (98)
T cd05762 1 PQIIQFP--EDMKVRAGESVELFCKVTGTQPITCTWMKFRKQI------QEGEGIKIENTENSSKLTITEGQQEHCGCYT 72 (98)
T ss_pred CceEECC--cCEEEECCCEEEEEEEEcccCCCceEEEECCEEe------cCCCcEEEEecCCeeEEEECCCChhhCEEEE
Confidence 6777777 7899999999999999999 9999964322 11222222 3468999999999999999
Q ss_pred EEEEcCCCccEEEEEEEEEeccc
Q psy3045 85 CVVNNSVGGESVETVLTVTAPLA 107 (267)
Q Consensus 85 C~~~~~~~~~~~~~~l~V~~~~~ 107 (267)
|.+.|..|.....+.|.|.+.|.
T Consensus 73 c~a~N~~G~~~~~~~l~V~~~P~ 95 (98)
T cd05762 73 LEVENKLGSRQAQVNLTVVDKPD 95 (98)
T ss_pred EEEEcCCCceeEEEEEEEecCCC
Confidence 99999999999999999998664
No 16
>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.
Probab=99.62 E-value=3e-15 Score=88.62 Aligned_cols=65 Identities=25% Similarity=0.438 Sum_probs=56.7
Q ss_pred EEEEeEeCCCCCceEEEEECCccCCC-CCCCeEEeccCCCCCCeEEEEEEEcCCCCceEEEEEEEe
Q psy3045 152 AQFTCKYEGNPVKTISWMKDGKPVPD-HNEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLG 216 (267)
Q Consensus 152 v~l~C~~~~~p~~~~~W~~~~~~~~~-~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v~ 216 (267)
+.|.|.+.|.|.|.+.|+|||.++.. .....|.|..+..+|+|.|+|.|+|..|..+.+..+.+.
T Consensus 1 ~~l~c~v~g~P~P~v~W~kdg~~l~~~~~~~~L~i~~v~~~D~G~YtC~a~N~~g~~~~~~~~~l~ 66 (67)
T cd05863 1 VKLPVKVAAYPPPEFQWYKDGKLISGKHSQHSLQIKDVTEASAGTYTLVLWNSAAGLEKRISLELI 66 (67)
T ss_pred CEEEEEEEEeCCCEEEEEECCEECcccCCcCEEEECCCCHHHCEEEEEEEEECCccEEEEEEEEEE
Confidence 47899999999999999999998853 345799999999999999999999999987777776653
No 17
>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins. Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes
Probab=99.61 E-value=6.4e-15 Score=95.10 Aligned_cols=74 Identities=16% Similarity=0.351 Sum_probs=64.3
Q ss_pred eEEEecCCCEEEEeEeCC-CCCceEEEEECCccCCCCC--------------CCeEEeccCCCCCCeEEEEEEEcCCCCc
Q psy3045 143 VQTIDFGRPAQFTCKYEG-NPVKTISWMKDGKPVPDHN--------------EPVFRIDSVRKEDKGMYQCVIRNEQESA 207 (267)
Q Consensus 143 ~~~~~~g~~v~l~C~~~~-~p~~~~~W~~~~~~~~~~~--------------~~~l~i~~~~~~d~g~y~C~~~~~~~~~ 207 (267)
...+.+|+++.|.|.+.| .|+|.+.|+|+|.++.... .+.|.|..+..+|+|.|+|.|.|..|..
T Consensus 12 ~~~v~~G~~v~L~c~v~g~~P~p~v~W~Kdg~~i~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Ytc~A~N~~G~~ 91 (101)
T cd04975 12 TIFVNLGENLNLVVEVEAYPPPPHINWTYDNRTLTNKLTEIVTSENESEYRYVSELKLVRLKESEAGTYTFLASNSDASK 91 (101)
T ss_pred eEEEECCCCEEEEEEEEecCCCCccEEEeCCeeCCCCcceeEEEeccCcceEEEEEEEeecCHhhCeeEEEEEECCCccE
Confidence 447889999999999999 7899999999999886321 2568999999999999999999999988
Q ss_pred eEEEEEEEe
Q psy3045 208 QASGELKLG 216 (267)
Q Consensus 208 ~~~~~l~v~ 216 (267)
..++.|.|.
T Consensus 92 ~~t~~L~V~ 100 (101)
T cd04975 92 SLTFELYVN 100 (101)
T ss_pred EEEEEEEEE
Confidence 888888774
No 18
>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1. Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.61 E-value=9.3e-15 Score=92.41 Aligned_cols=82 Identities=22% Similarity=0.293 Sum_probs=67.3
Q ss_pred CCcccCCCCceeEEecCCCeEEEEEEecc-----eeeeecccCcceeccccCCceEEEEeeEEEEeecccCCCeeEEEEE
Q psy3045 13 APTFSSVSDIIRFKKPGGESFALLCEAQE-----NMWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYLCVV 87 (267)
Q Consensus 13 ~P~~~~~~~~~~~~v~~g~~v~l~C~~~~-----~~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~ 87 (267)
||.|...+ .+..+.+|+++.|.|.+.| +.|++++... ....++...+..|.|.+++.+|+|.|+|.|
T Consensus 1 ~p~i~~~~--~~~~~~~G~~v~l~C~~~G~P~P~v~W~k~~~~~------~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A 72 (88)
T cd05851 1 PADINVKF--KDTYALKGQNVTLECFALGNPVPVIRWRKILEPM------PATAEISMSGAVLKIFNIQPEDEGTYECEA 72 (88)
T ss_pred CCceEEcc--ccEEEeCCCcEEEEEEecccCCCEEEEEECCcCC------CCCCEEecCCCEEEECcCChhhCEEEEEEE
Confidence 68888888 7899999999999999999 9999964321 112334444568999999999999999999
Q ss_pred EcCCCccEEEEEEEE
Q psy3045 88 NNSVGGESVETVLTV 102 (267)
Q Consensus 88 ~~~~~~~~~~~~l~V 102 (267)
.|..|.....+.|.|
T Consensus 73 ~N~~G~~~~~~~l~V 87 (88)
T cd05851 73 ENIKGKDKHQARVYV 87 (88)
T ss_pred EcCCCceEEEEEEEE
Confidence 999999888888776
No 19
>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain. IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.
Probab=99.59 E-value=4.8e-14 Score=97.42 Aligned_cols=108 Identities=17% Similarity=0.380 Sum_probs=77.6
Q ss_pred EEEEeecccCCCeeEEEEEEcCCCccEEEEEEEEEeccccccCCceEEEeCCCceEEEEEeecCCCcccccCCceEEEec
Q psy3045 69 TLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDF 148 (267)
Q Consensus 69 ~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~ 148 (267)
+|+|.+++..|+|.|+|.+.+..+.....+.|.|..+|.....+... ....
T Consensus 2 sL~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~l~v~~~P~v~~~~~~~-----------------------------~~~~ 52 (139)
T cd05771 2 SLTLPGLTVHDEGTYICSVSTPPHQAQQIIQLSVSEPPRVRLSLEKL-----------------------------VSMI 52 (139)
T ss_pred eEEECCCCHHHCEEEEEEEEccCcceeeEEEEEEecCCceEEeCCCc-----------------------------eeec
Confidence 68999999999999999999888888888889888765543332211 3336
Q ss_pred CCCEEEEeEeCCC-CC-ceEEEEECCccCCC---------------CCC------CeEEeccCCCCCCeEEEEEEEcCCC
Q psy3045 149 GRPAQFTCKYEGN-PV-KTISWMKDGKPVPD---------------HNE------PVFRIDSVRKEDKGMYQCVIRNEQE 205 (267)
Q Consensus 149 g~~v~l~C~~~~~-p~-~~~~W~~~~~~~~~---------------~~~------~~l~i~~~~~~d~g~y~C~~~~~~~ 205 (267)
|+.+.|.|.+.+. |. +++.|++++..... ..+ +.|.+.....++...|+|.+.|...
T Consensus 53 ~~~~~L~C~a~g~~P~~~~i~W~~~g~~~~~~~~~~~~~~~~~~~~~~dgt~~~~s~L~v~~~~~~~g~~ytC~V~H~~l 132 (139)
T cd05771 53 EEPQTLICHIAGYYPLDVQVEWTREPPGDSPPPVSLSNVSFSSHRQHQDGTYSLSSHLTLEPGTEDAGATYTCRVSHVSL 132 (139)
T ss_pred CCcEEEEEEECCCCCCCeEEEEEECCCCCccceeccCCeEecceEeCCCCCEEEEEEEEecCCccCCCCEEEEEEEcCCC
Confidence 8889999999986 54 58999998854211 111 3455554444556699999988753
No 20
>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin. Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.
Probab=99.59 E-value=9e-15 Score=89.49 Aligned_cols=68 Identities=28% Similarity=0.551 Sum_probs=59.2
Q ss_pred cCCCEEEEeEeCCCCCceEEEEECCccCCCC------CCCeEEeccCCCCCCeEEEEEEEcCCCCceEEEEEEE
Q psy3045 148 FGRPAQFTCKYEGNPVKTISWMKDGKPVPDH------NEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKL 215 (267)
Q Consensus 148 ~g~~v~l~C~~~~~p~~~~~W~~~~~~~~~~------~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v 215 (267)
+|+.+.|.|.+.|.|.|.+.|++++..+... ....|.|.++..+|.|.|+|.|.|..|....+..|.|
T Consensus 1 eG~~v~l~C~~~g~P~p~i~W~k~g~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~L~V 74 (74)
T cd05745 1 EGQTVDFLCEAQGYPQPVIAWTKGGSQLSVDRRHLVLSSGTLRISRVALHDQGQYECQAVNIVGSQRTVAQLTV 74 (74)
T ss_pred CCCeEEEEeECCEecCCEEEEEECCEECCCCCCeEEccCCeEEEeeCCHHhCEEEEEEEEeCCCceeEEEEEeC
Confidence 4889999999999999999999999877532 3468999999999999999999999998888777653
No 21
>cd04968 Ig3_Contactin_like Third Ig domain of contactin. Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.59 E-value=3.5e-14 Score=90.07 Aligned_cols=75 Identities=27% Similarity=0.501 Sum_probs=64.3
Q ss_pred CceEEEecCCCEEEEeEeCCCCCceEEEEECCccCCCC-----CCCeEEeccCCCCCCeEEEEEEEcCCCCceEEEEEEE
Q psy3045 141 PTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDH-----NEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKL 215 (267)
Q Consensus 141 ~~~~~~~~g~~v~l~C~~~~~p~~~~~W~~~~~~~~~~-----~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v 215 (267)
+....+.+|+.+.|.|.+.|.|.|.+.|++++..+... ....|.|.++..+|+|.|.|.|.|..|....+..|.|
T Consensus 8 p~~~~~~~g~~v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 87 (88)
T cd04968 8 PKDTYALKGQNVTLECFALGNPVPQIKWRKVDGSMPSSAEISMSGAVLKIPNIQFEDEGTYECEAENIKGKDTHQGRIYV 87 (88)
T ss_pred CCceEEeCCCcEEEEEEeeEeCCCEEEEEECCCcCCCccEEEEeCCEEEECCCCcccCEEEEEEEEECCCcEEEEEEEEE
Confidence 44557889999999999999999999999988765432 4578999999999999999999999998887777765
No 22
>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.
Probab=99.58 E-value=1.5e-14 Score=93.47 Aligned_cols=73 Identities=19% Similarity=0.411 Sum_probs=64.3
Q ss_pred EEEecCCCEEEEeEeCCCCCceEEEEECCccCCCCC---------------CCeEEeccCCCCCCeEEEEEEEcCCCCce
Q psy3045 144 QTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHN---------------EPVFRIDSVRKEDKGMYQCVIRNEQESAQ 208 (267)
Q Consensus 144 ~~~~~g~~v~l~C~~~~~p~~~~~W~~~~~~~~~~~---------------~~~l~i~~~~~~d~g~y~C~~~~~~~~~~ 208 (267)
..+..|+.+.|.|.+.|.|.|.+.|+|+|.++..+. .+.|.|..+..+|+|.|+|.|.|..|...
T Consensus 13 ~~~~~~~~~~l~~~v~g~P~P~v~W~kdg~~l~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~D~G~Ytc~A~N~~g~~~ 92 (101)
T cd05859 13 EFANLHEVKEFVVEVEAYPPPQIRWLKDNRTLIENLTEITTSEHNVQETRYVSKLKLIRAKEEDSGLYTALAQNEDAVKS 92 (101)
T ss_pred EEEecCCcEEEEEEEEEeCCCceEEEECCEECcCCcceEEeccccccceeeccEEEEeeCCHHHCEEEEEEEEcCCceEE
Confidence 377789999999999999999999999999986432 25799999999999999999999999988
Q ss_pred EEEEEEEe
Q psy3045 209 ASGELKLG 216 (267)
Q Consensus 209 ~~~~l~v~ 216 (267)
.++.+.|.
T Consensus 93 ~t~~l~V~ 100 (101)
T cd05859 93 YTFALQIQ 100 (101)
T ss_pred EEEEEEEE
Confidence 88888774
No 23
>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.
Probab=99.58 E-value=2.5e-14 Score=89.88 Aligned_cols=70 Identities=23% Similarity=0.447 Sum_probs=61.4
Q ss_pred EEecCCCEEEEeEeCCCCCceEEEEECCccCCCC----------CCCeEEeccCCCCCCeEEEEEEEcCCCCceEEEEEE
Q psy3045 145 TIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDH----------NEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELK 214 (267)
Q Consensus 145 ~~~~g~~v~l~C~~~~~p~~~~~W~~~~~~~~~~----------~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~ 214 (267)
.+..|+.+.|.|.+.|.|.|.+.|++++.++... ..+.|.|..+.++|+|.|+|.|.|..|....++.|.
T Consensus 6 ~v~~G~~v~l~c~~~G~P~P~v~W~k~~~~i~~~~~r~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~N~~G~~~~~~~l~ 85 (86)
T cd05894 6 VVVAGNKLRLDVPISGEPAPTVTWSRGDKAFTETEGRVRVESYKDLSSFVIEGAEREDEGVYTITVTNPVGEDHASLFVK 85 (86)
T ss_pred EEEcCCEEEEEeeEeecCCCeEEEEECCEECccCCCeEEEEEcCCeEEEEECCCccCcCEEEEEEEEeCCCcEEEEEEEE
Confidence 6788999999999999999999999999888532 235799999999999999999999999887776664
No 24
>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=99.57 E-value=3.5e-14 Score=89.73 Aligned_cols=71 Identities=17% Similarity=0.347 Sum_probs=60.7
Q ss_pred CCCEEEEeEeCCCCCceEEEEECCccCCCCC--------------CCeEEeccCCCCCCeEEEEEEEcCCCCceEEEEEE
Q psy3045 149 GRPAQFTCKYEGNPVKTISWMKDGKPVPDHN--------------EPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELK 214 (267)
Q Consensus 149 g~~v~l~C~~~~~p~~~~~W~~~~~~~~~~~--------------~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~ 214 (267)
|+.+.|.|.+.|.|++.+.|++++..+.... .+.|.|.++..+|+|.|+|.|.|..|.......|.
T Consensus 1 g~~~~l~C~~~g~p~~~i~W~k~~~~i~~~~~r~~~~~~~~~~~~~s~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~L~ 80 (88)
T cd05735 1 GQKKEMSCTAHGEKPIIVRWEKEDRIINPEMSRYLVSTKEVGDEVISTLQILPTVREDSGFFSCHAINSYGEDRGIIQLT 80 (88)
T ss_pred CCeEEEEEEEECCCCCEEEEeeCCEECCCCCCcEEEEEecCCCcEEEEEEECCCCcccCEEEEEEEEcCCCcceEEEEEE
Confidence 6889999999999999999999997764321 14688999999999999999999999999999998
Q ss_pred Eeccc
Q psy3045 215 LGGRF 219 (267)
Q Consensus 215 v~~~~ 219 (267)
|....
T Consensus 81 V~~~P 85 (88)
T cd05735 81 VQEPP 85 (88)
T ss_pred EeCCC
Confidence 87543
No 25
>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the
Probab=99.57 E-value=5.7e-14 Score=90.51 Aligned_cols=74 Identities=28% Similarity=0.544 Sum_probs=64.4
Q ss_pred eEEEecCCCEEEEeEeCCCCCceEEEEECCccCCCC--------CCCeEEeccCCCCCCeEEEEEEEcCCCCceEEEEEE
Q psy3045 143 VQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDH--------NEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELK 214 (267)
Q Consensus 143 ~~~~~~g~~v~l~C~~~~~p~~~~~W~~~~~~~~~~--------~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~ 214 (267)
+..+..|+.+.|.|.+.|.|.+.+.|++++..+... ..+.|.|.++..+|.|.|+|.|.|..|....++.|.
T Consensus 12 ~~~~~~G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L~ 91 (95)
T cd05730 12 NATANLGQSVTLACDADGFPEPTMTWTKDGEPIESGEEKYSFNEDGSEMTILDVDKLDEAEYTCIAENKAGEQEAEIHLK 91 (95)
T ss_pred ceEEeCCCCEEEEEeccEeCCCEEEEEECCEECcCCCCEEEEeCCCCEEEECCCChhhCEEEEEEEEcCCCeEEEEEEEE
Confidence 347788999999999999999999999999877543 345799999999999999999999999988888877
Q ss_pred Ee
Q psy3045 215 LG 216 (267)
Q Consensus 215 v~ 216 (267)
|.
T Consensus 92 V~ 93 (95)
T cd05730 92 VF 93 (95)
T ss_pred EE
Confidence 74
No 26
>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.57 E-value=2.1e-14 Score=87.17 Aligned_cols=67 Identities=25% Similarity=0.516 Sum_probs=58.2
Q ss_pred CCCEEEEeEeCCCCCceEEEEECCccCCCC------CCCeEEeccCCCCCCeEEEEEEEcCCCCceEEEEEEE
Q psy3045 149 GRPAQFTCKYEGNPVKTISWMKDGKPVPDH------NEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKL 215 (267)
Q Consensus 149 g~~v~l~C~~~~~p~~~~~W~~~~~~~~~~------~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v 215 (267)
|+.+.|.|.+.|.|.|.+.|++++..+..+ ....|.|.++..+|.|.|+|.|.|..|....+..|.|
T Consensus 1 G~~~~l~C~~~g~P~p~v~W~k~~~~l~~~~r~~~~~~g~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~~ 73 (73)
T cd05852 1 GGRVIIECKPKAAPKPKFSWSKGTELLVNNSRISIWDDGSLEILNITKLDEGSYTCFAENNRGKANSTGVLSV 73 (73)
T ss_pred CCeEEEEEecceeCCCEEEEEeCCEecccCCCEEEcCCCEEEECcCChhHCEEEEEEEECCCCceeEEEEEEC
Confidence 678999999999999999999998876432 3468999999999999999999999999888877653
No 27
>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.
Probab=99.57 E-value=3.7e-14 Score=90.62 Aligned_cols=73 Identities=26% Similarity=0.456 Sum_probs=62.1
Q ss_pred ceEEEecCCCEEEEeEeCCCCCceEEEEECCccCCCC----------CCCeEEeccCCCCCCeEEEEEEEcCCCCceEEE
Q psy3045 142 TVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDH----------NEPVFRIDSVRKEDKGMYQCVIRNEQESAQASG 211 (267)
Q Consensus 142 ~~~~~~~g~~v~l~C~~~~~p~~~~~W~~~~~~~~~~----------~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~ 211 (267)
....+.+|+++.|.|.+.|.|.|.+.|++++.++... ....|.|.++..+|+|.|+|.|.|..|.....+
T Consensus 9 ~~v~v~~G~~v~L~C~v~G~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~ 88 (92)
T cd05737 9 DVVTIMEGKTLNLTCTVFGDPDPEVSWLKNDQALALSDHYNVKVEQGKYASLTIKGVSSEDSGKYGIVVKNKYGGETVDV 88 (92)
T ss_pred ceEEEeCCCcEEEEEEEEecCCCeEEEEECCEECccCCCEEEEEcCCCEEEEEEccCChhhCEEEEEEEEECCCcceEEE
Confidence 3457889999999999999999999999999877532 124699999999999999999999999887776
Q ss_pred EEE
Q psy3045 212 ELK 214 (267)
Q Consensus 212 ~l~ 214 (267)
.+.
T Consensus 89 ~v~ 91 (92)
T cd05737 89 TVS 91 (92)
T ss_pred EEe
Confidence 654
No 28
>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=99.56 E-value=3.7e-14 Score=87.22 Aligned_cols=67 Identities=27% Similarity=0.614 Sum_probs=58.6
Q ss_pred CCCEEEEeEeCCCCCceEEEEECCccCCCC--------CCCeEEeccCCCCCCeEEEEEEEcCCCCceEEEEEEE
Q psy3045 149 GRPAQFTCKYEGNPVKTISWMKDGKPVPDH--------NEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKL 215 (267)
Q Consensus 149 g~~v~l~C~~~~~p~~~~~W~~~~~~~~~~--------~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v 215 (267)
|+.+.|.|.+.|.|.|.++|+++|.++... ....|.|.+++.+|+|.|.|.|.|..|.....+.|.|
T Consensus 1 G~~v~l~C~~~G~P~p~i~W~k~g~~i~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V 75 (76)
T cd05867 1 GETARLDCQVEGIPTPNITWSINGAPIEGTDPDPRRHVSSGALILTDVQPSDTAVYQCEARNRHGNLLANAHVHV 75 (76)
T ss_pred CCeEEEEEEeeEeCCCeEEEEECCEECCCCCCCceEEeeCCEEEECCCChhhCEEEEEEEECCCCeEEEEEEEEE
Confidence 678999999999999999999999877542 2468999999999999999999999999888777765
No 29
>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=99.56 E-value=2.8e-14 Score=89.71 Aligned_cols=75 Identities=33% Similarity=0.635 Sum_probs=64.6
Q ss_pred CCceEEEecCCCEEEEeEeCCCCCceEEEEECCccCCCC-----CCCeEEeccCCCCCCeEEEEEEEcCCCCceEEEEEE
Q psy3045 140 EPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDH-----NEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELK 214 (267)
Q Consensus 140 ~~~~~~~~~g~~v~l~C~~~~~p~~~~~W~~~~~~~~~~-----~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~ 214 (267)
.+.+..+..|+.+.|.|.+.|.|.|.+.|++++..+... ....|.|..+..+|+|.|+|.|.|..|....++.|.
T Consensus 5 ~p~~~~~~~G~~~~l~C~~~g~p~p~v~W~k~g~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~ 84 (85)
T cd05728 5 VISDTEADIGSSLRWECKASGNPRPAYRWLKNGQPLASENRIEVEAGDLRITKLSLSDSGMYQCVAENKHGTIYASAELA 84 (85)
T ss_pred cCCccEEcCCCcEEEEEEeeEeCCCEEEEEECCEECCCCCeEEEeCCEEEEeeCCHHHCEEEEEEEECCCCeEEEEEEEE
Confidence 345558889999999999999999999999999987643 346899999999999999999999999877776664
No 30
>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins. Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.
Probab=99.55 E-value=7.5e-14 Score=89.25 Aligned_cols=77 Identities=29% Similarity=0.597 Sum_probs=64.5
Q ss_pred cccCCceEEEecCCCEEEEeEeCCCCCceEEEEECCccCCCC---------CCCeEEeccCCCCCCeEEEEEEEcCCCCc
Q psy3045 137 AGVEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDH---------NEPVFRIDSVRKEDKGMYQCVIRNEQESA 207 (267)
Q Consensus 137 ~~~~~~~~~~~~g~~v~l~C~~~~~p~~~~~W~~~~~~~~~~---------~~~~l~i~~~~~~d~g~y~C~~~~~~~~~ 207 (267)
+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+... ..+.|.|.++..+|+|.|+|.|.|..|..
T Consensus 6 ~~~~p~~~~~~~G~~~~L~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~ 85 (92)
T cd05747 6 ILTKPRSLTVSEGESARFSCDVDGEPAPTVTWMREGQIIVSSQRHQITSTEYKSTFEISKVQMSDEGNYTVVVENSEGKQ 85 (92)
T ss_pred ccccCccEEEeCCCcEEEEEEEeecCCCEEEEEECCEECCCCCcEEEEEcCCeeEEEECCCCcccCEeEEEEEEcCCCCE
Confidence 334456678999999999999999999999999998876532 23579999999999999999999999987
Q ss_pred eEEEEE
Q psy3045 208 QASGEL 213 (267)
Q Consensus 208 ~~~~~l 213 (267)
..++.|
T Consensus 86 ~~~~~l 91 (92)
T cd05747 86 EAQFTL 91 (92)
T ss_pred eEEEEe
Confidence 766654
No 31
>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin. Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.
Probab=99.55 E-value=3.3e-14 Score=86.58 Aligned_cols=64 Identities=25% Similarity=0.435 Sum_probs=54.7
Q ss_pred EEEEeEeCCCCCceEEEEECCccCCCC---------CC--CeEEeccCCCCCCeEEEEEEEcCCCCceEEEEEEE
Q psy3045 152 AQFTCKYEGNPVKTISWMKDGKPVPDH---------NE--PVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKL 215 (267)
Q Consensus 152 v~l~C~~~~~p~~~~~W~~~~~~~~~~---------~~--~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v 215 (267)
+.|.|.+.|.|.|.+.|+|++..+... .. .+|.|.++..+|+|.|+|.|.|..|....++.|.|
T Consensus 1 v~l~C~v~G~P~P~i~W~k~~~~i~~~~~r~~~~~~~~g~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~a~L~V 75 (75)
T cd05892 1 VKLECQISAIPPPKIFWKRNNEMVQYNTDRISLYQDNSGRVTLLIKNVNKKDAGWYTVSAVNEAGVATCHARLDV 75 (75)
T ss_pred CEEEEEEEecCCCeEEEEECCEECcCCCCeEEEEEcCCCcEEEEECCCChhhCEEEEEEEEcCcCeEEEEEEEeC
Confidence 478999999999999999999887532 11 27999999999999999999999999888877754
No 32
>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo
Probab=99.54 E-value=8.4e-14 Score=88.65 Aligned_cols=73 Identities=19% Similarity=0.373 Sum_probs=62.2
Q ss_pred ceEEEecCCCEEEEeEeCCCCCceEEEEECCccCCCC---------CCCeEEeccCCCCCCeEEEEEEEcCCCCceEEEE
Q psy3045 142 TVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDH---------NEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGE 212 (267)
Q Consensus 142 ~~~~~~~g~~v~l~C~~~~~p~~~~~W~~~~~~~~~~---------~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~ 212 (267)
....+.+|+.+.|.|.+.|.|.|.+.|++++..+... ....|.|.++..+|.|.|+|.|.|..|....+..
T Consensus 8 ~~~~v~~G~~v~l~C~~~G~P~p~v~W~~~g~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~g~Y~C~A~N~~G~~~~~~~ 87 (90)
T cd04972 8 NATVVYEGGTATIRCTAEGSPLPKVEWIIAGLIVIQTRTDTLETTVDIYNLQLSNITSETQTTVTCTAENPVGQANVSVQ 87 (90)
T ss_pred cCEEEcCCCcEEEEEEEEEcCCCeEEEEECCEEccCCccEEEEecCCEEEEEEecCCcccCEEEEEEEECCCCceeEEEE
Confidence 3446889999999999999999999999999876432 1247899999999999999999999998887776
Q ss_pred EE
Q psy3045 213 LK 214 (267)
Q Consensus 213 l~ 214 (267)
|.
T Consensus 88 L~ 89 (90)
T cd04972 88 VT 89 (90)
T ss_pred Ee
Confidence 65
No 33
>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans
Probab=99.54 E-value=1e-13 Score=88.72 Aligned_cols=75 Identities=28% Similarity=0.620 Sum_probs=60.8
Q ss_pred CceEEEecCCCEEEEeEeCCCC-CceEEEEE-CCccCCC-C----------CCCeEEeccCCCCCCeEEEEEEEcCC-CC
Q psy3045 141 PTVQTIDFGRPAQFTCKYEGNP-VKTISWMK-DGKPVPD-H----------NEPVFRIDSVRKEDKGMYQCVIRNEQ-ES 206 (267)
Q Consensus 141 ~~~~~~~~g~~v~l~C~~~~~p-~~~~~W~~-~~~~~~~-~----------~~~~l~i~~~~~~d~g~y~C~~~~~~-~~ 206 (267)
+....+..|+.+.|.|.+.|.| +|.+.|++ ++..+.. . ..+.|.|.++..+|+|.|+|.|.|.. +.
T Consensus 7 p~~~~v~~G~~v~l~C~v~G~P~~p~i~W~~~~g~~l~~~~~r~~v~~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~~g~ 86 (96)
T cd05865 7 PSQGEISVGESKFFLCQVAGEAKDKDISWFSPNGEKLTPNQQRISVVRNDDYSSTLTIYNANIDDAGIYKCVVSNEDEGE 86 (96)
T ss_pred CCccEECCCCeEEEEEEEeCCCCCCEEEEECCCCcCccccCCeEEEEeCCCCceEEEEeccChhhCEEEEEEEEcCCCCc
Confidence 3444788899999999999998 47999998 7766543 1 12579999999999999999999996 77
Q ss_pred ceEEEEEEE
Q psy3045 207 AQASGELKL 215 (267)
Q Consensus 207 ~~~~~~l~v 215 (267)
.+.++.|.+
T Consensus 87 ~~~s~~l~v 95 (96)
T cd05865 87 SEATVNVKI 95 (96)
T ss_pred EEEEEEEEE
Confidence 777777655
No 34
>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=99.54 E-value=7.1e-14 Score=85.81 Aligned_cols=67 Identities=25% Similarity=0.537 Sum_probs=58.4
Q ss_pred CCCEEEEeEeCCCCCceEEEEECCccCCCC--------CCCeEEeccCCCCCCeEEEEEEEcCCCCceEEEEEEE
Q psy3045 149 GRPAQFTCKYEGNPVKTISWMKDGKPVPDH--------NEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKL 215 (267)
Q Consensus 149 g~~v~l~C~~~~~p~~~~~W~~~~~~~~~~--------~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v 215 (267)
|+.+.|.|.+.|.|.|.++|+++|.++... +...|.+..++.+|.|.|+|.|+|..|....++.|.|
T Consensus 1 g~~~~l~C~a~G~P~P~i~W~k~g~~i~~~~~~~~~~~~~~~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v 75 (76)
T cd05868 1 GEDGTLICRANGNPKPSISWLTNGVPIEIAPTDPSRKVDGDTIIFSKVQERSSAVYQCNASNEYGYLLANAFVNV 75 (76)
T ss_pred CCCEEEEEEeeEeCCCeEEEEECCEEccccCCCceEEecCCEEEECCCCHhhCEEEEEEEEcCCCEEEEEEEEEe
Confidence 678999999999999999999999887421 2357889999999999999999999999888887765
No 35
>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.
Probab=99.53 E-value=1.1e-13 Score=87.22 Aligned_cols=71 Identities=31% Similarity=0.592 Sum_probs=60.8
Q ss_pred EEecCCCEEEEeEeCCCCCceEEEEECCccCCCCC----------CCeEEeccCCCCCCeEEEEEEEcCCCCceEEEEEE
Q psy3045 145 TIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHN----------EPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELK 214 (267)
Q Consensus 145 ~~~~g~~v~l~C~~~~~p~~~~~W~~~~~~~~~~~----------~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~ 214 (267)
.+..|+.+.|.|.+.|.|.+.+.|++++..+.... ...|.|..+..+|+|.|+|.|.|..|....++.|.
T Consensus 5 ~v~~G~~~~L~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~l~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~ 84 (85)
T cd05857 5 AVPAANTVKFRCPAAGNPTPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLD 84 (85)
T ss_pred EcCCCCEEEEEEEcCCCCCCEEEEEECCEECCCCCceeeeEEeCCceEEEEccCCcccCEEEEEEEEeCCCEEEEEEEEE
Confidence 67789999999999999999999999998875432 23588889999999999999999999888877665
Q ss_pred E
Q psy3045 215 L 215 (267)
Q Consensus 215 v 215 (267)
|
T Consensus 85 v 85 (85)
T cd05857 85 V 85 (85)
T ss_pred C
Confidence 3
No 36
>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the
Probab=99.53 E-value=1e-13 Score=89.28 Aligned_cols=87 Identities=23% Similarity=0.332 Sum_probs=67.3
Q ss_pred CCcccCCCCceeEEecCCCeEEEEEEecc-----eeeeecccCcceeccccCCceEEE--EeeEEEEeecccCCCeeEEE
Q psy3045 13 APTFSSVSDIIRFKKPGGESFALLCEAQE-----NMWFKFIEGSSRKVAVPLNDRVKQ--VSGTLIIKEAKVEDSGKYLC 85 (267)
Q Consensus 13 ~P~~~~~~~~~~~~v~~g~~v~l~C~~~~-----~~W~~~~~~~~~~~~~~~~~~~~~--~~~~l~i~~~~~~d~G~Y~C 85 (267)
||.|...+...+..+..|+++.|.|.+.+ +.|++++..... ...++.. ..+.|.|.++..+|+|.|+|
T Consensus 1 pp~i~~~~~~~~~~~~~G~~v~L~C~~~g~P~p~v~W~k~g~~~~~-----~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C 75 (95)
T cd05730 1 PPTIRARQSEVNATANLGQSVTLACDADGFPEPTMTWTKDGEPIES-----GEEKYSFNEDGSEMTILDVDKLDEAEYTC 75 (95)
T ss_pred CCccccCCcccceEEeCCCCEEEEEeccEeCCCEEEEEECCEECcC-----CCCEEEEeCCCCEEEECCCChhhCEEEEE
Confidence 57777776556778999999999999999 999996332111 0123322 33579999999999999999
Q ss_pred EEEcCCCccEEEEEEEEEe
Q psy3045 86 VVNNSVGGESVETVLTVTA 104 (267)
Q Consensus 86 ~~~~~~~~~~~~~~l~V~~ 104 (267)
.+.|..|.....+.|.|..
T Consensus 76 ~a~N~~G~~~~~~~L~V~~ 94 (95)
T cd05730 76 IAENKAGEQEAEIHLKVFA 94 (95)
T ss_pred EEEcCCCeEEEEEEEEEEe
Confidence 9999999988888888764
No 37
>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=99.53 E-value=6.3e-14 Score=84.04 Aligned_cols=65 Identities=23% Similarity=0.414 Sum_probs=55.6
Q ss_pred EEEEeEeCCCCCceEEEEECCccCCCC----CCCeEEeccCCCCCCeEEEEEEEcCCCCceEEEEEEEe
Q psy3045 152 AQFTCKYEGNPVKTISWMKDGKPVPDH----NEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLG 216 (267)
Q Consensus 152 v~l~C~~~~~p~~~~~W~~~~~~~~~~----~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v~ 216 (267)
+.|.|.+.|.|.|.+.|+||+.++... ....|.|..+..+|+|.|+|.|.|..|..+....+.+.
T Consensus 1 ~~~~c~v~G~P~P~v~W~k~g~~l~~~~~~~~~~~L~I~~v~~~D~G~YtC~a~N~~G~~~~~~t~~l~ 69 (70)
T cd05864 1 VKIPVKYYGYPPPEVKWYKNGQLIVLNHTFKRGVHLTIYEVTEKDAGNYTVVLTNPITKEEQRHTFQLV 69 (70)
T ss_pred CEEEeEEEEeCCCEEEEEECCEECCCCCEEccCCEEEECcCCHHHCEEEEEEEEECCCceeeEEEEEEE
Confidence 368999999999999999999988643 24579999999999999999999999987776666553
No 38
>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr
Probab=99.52 E-value=1.8e-13 Score=88.38 Aligned_cols=71 Identities=18% Similarity=0.464 Sum_probs=58.8
Q ss_pred EEecCCCEEEEeEeCCCCCceEEEEECCccCCCC--------------CCCeEEeccCCCCCCeEEEEEEEcCCCCceEE
Q psy3045 145 TIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDH--------------NEPVFRIDSVRKEDKGMYQCVIRNEQESAQAS 210 (267)
Q Consensus 145 ~~~~g~~v~l~C~~~~~p~~~~~W~~~~~~~~~~--------------~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~ 210 (267)
.+..|+.+.|.|.+.|.|.|.+.|++++..+... ..+.|.|.++..+|+|.|+|.|.|..|....+
T Consensus 13 ~~~~g~~v~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~ 92 (97)
T cd05869 13 AMELEEQITLTCEASGDPIPSITWRTSTRNISSEEKTLDGHIVVRSHARVSSLTLKYIQYTDAGEYLCTASNTIGQDSQS 92 (97)
T ss_pred EEEcCCCEEEEEEeeEeCCCEEEEEECCccccCCccccCccEEEEcCccEEEEEEecCccCcCEEEEEEEecCCCCeeEE
Confidence 4455899999999999999999999988765421 11479999999999999999999999988877
Q ss_pred EEEEE
Q psy3045 211 GELKL 215 (267)
Q Consensus 211 ~~l~v 215 (267)
..|.|
T Consensus 93 ~~l~v 97 (97)
T cd05869 93 MYLEV 97 (97)
T ss_pred EEEEC
Confidence 76653
No 39
>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin. Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.
Probab=99.51 E-value=7.1e-14 Score=85.25 Aligned_cols=64 Identities=23% Similarity=0.505 Sum_probs=54.3
Q ss_pred EEEEeEeCCCCCceEEEEECCccCCCCC-------C----CeEEeccCCCCCCeEEEEEEEcCCCCceEEEEEEE
Q psy3045 152 AQFTCKYEGNPVKTISWMKDGKPVPDHN-------E----PVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKL 215 (267)
Q Consensus 152 v~l~C~~~~~p~~~~~W~~~~~~~~~~~-------~----~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v 215 (267)
+.|.|.+.|.|.|.+.|+|++..+.... . ..|.|..+..+|+|.|+|.|.|..|....+..|.|
T Consensus 1 v~l~C~v~G~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~a~L~V 75 (75)
T cd05893 1 VRLECRVSGVPHPQIFWKKENESLTHNTDRVSMHQDNCGYICLLIQGATKEDAGWYTVSAKNEAGIVSCTARLDV 75 (75)
T ss_pred CEEEEEEeEecCCEEEEEECCEECCCCCCeEEEEEcCCCEEEEEECCCCHHHCEEEEEEEEcCCCEEEEEEEEeC
Confidence 4789999999999999999998875321 1 15899999999999999999999999888877653
No 40
>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=99.51 E-value=3e-13 Score=87.50 Aligned_cols=87 Identities=22% Similarity=0.375 Sum_probs=64.8
Q ss_pred CCcccCCCCceeEEecCCCeEEEEEEecc-----eeeeecccCcceec-cccCCceEEE----EeeEEEEeecccCCCee
Q psy3045 13 APTFSSVSDIIRFKKPGGESFALLCEAQE-----NMWFKFIEGSSRKV-AVPLNDRVKQ----VSGTLIIKEAKVEDSGK 82 (267)
Q Consensus 13 ~P~~~~~~~~~~~~v~~g~~v~l~C~~~~-----~~W~~~~~~~~~~~-~~~~~~~~~~----~~~~l~i~~~~~~d~G~ 82 (267)
+|.|.. + .+..+.+|++++|.|.+.+ +.|+++.++..... ......|+.. ...+|.|.+++.+|+|.
T Consensus 2 ~p~i~~-~--~~~~~~~G~~v~l~C~~~G~P~p~i~W~k~~~g~~~~~~~~~~~~r~~v~~~~~~~~L~I~~v~~~D~G~ 78 (98)
T cd05870 2 QPHIIQ-L--KNETTVENGAATLSCKAEGEPIPEITWKRASDGHTFSEGDKSPDGRIEVKGQHGESSLHIKDVKLSDSGR 78 (98)
T ss_pred CCEEEe-e--ccEEEcCCCcEEEEEecccCCCCeEEEEECCCCceeccCCcCcCceEEEeecCCeeEEEEeeCCcCCCEE
Confidence 677764 3 6899999999999999998 99999643322111 0112234433 23589999999999999
Q ss_pred EEEEEEcCCCccEEEEEEEE
Q psy3045 83 YLCVVNNSVGGESVETVLTV 102 (267)
Q Consensus 83 Y~C~~~~~~~~~~~~~~l~V 102 (267)
|+|.|.|..|.....+.|.|
T Consensus 79 Y~C~A~N~~G~~~~~~~l~~ 98 (98)
T cd05870 79 YDCEAASRIGGHQKSMYLDI 98 (98)
T ss_pred EEEEEeccCCcceeEEEEeC
Confidence 99999999999888777764
No 41
>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa
Probab=99.51 E-value=1.1e-13 Score=83.66 Aligned_cols=65 Identities=26% Similarity=0.465 Sum_probs=56.0
Q ss_pred EEEEeEeCCCCCceEEEEECCccCCCC-----CCCeEEeccCCCCCCeEEEEEEEcCCCCceEEEEEEEe
Q psy3045 152 AQFTCKYEGNPVKTISWMKDGKPVPDH-----NEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLG 216 (267)
Q Consensus 152 v~l~C~~~~~p~~~~~W~~~~~~~~~~-----~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v~ 216 (267)
+.|.|.+.|.|.|.+.|+|+|.++... ....|.|.++..+|+|.|+|.|.|..|....+..+.+.
T Consensus 1 ~~l~c~v~g~P~p~v~W~k~g~~l~~~~~~~~~~~~L~I~~v~~~D~G~YtC~a~N~~g~~~~~~~~~~~ 70 (71)
T cd04976 1 VRLPVKVKAYPPPEIQWYKNGKLISEKNRTKKSGHSLTIKDVTEEDAGNYTVVLTNKQAKLEKRLTFTLV 70 (71)
T ss_pred CEEEeEEEEeCCCEEEEEECCEECCCCCEEEcCCCEEEECcCCHHHCEEEEEEEEcCCccEEEEEEEEEE
Confidence 478999999999999999999888643 45789999999999999999999999887777766653
No 42
>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=99.51 E-value=1.5e-13 Score=84.66 Aligned_cols=67 Identities=25% Similarity=0.534 Sum_probs=58.5
Q ss_pred CCCEEEEeEeCCCCCceEEEEECCccCCCC--------CCCeEEeccCCCCCCeEEEEEEEcCCCCceEEEEEEE
Q psy3045 149 GRPAQFTCKYEGNPVKTISWMKDGKPVPDH--------NEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKL 215 (267)
Q Consensus 149 g~~v~l~C~~~~~p~~~~~W~~~~~~~~~~--------~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v 215 (267)
|+.+.|.|.+.|.|.|.+.|++++..+... ....|.|..++.+|+|.|+|.|.|..|.....+.|.|
T Consensus 1 G~~~~l~C~~~g~P~p~i~W~~~g~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~V 75 (76)
T cd04978 1 GETGRLDCEAEGIPQPTITWRLNGVPIEELPPDPRRRVDGGTLILSNVQPNDTAVYQCNASNVHGYLLANAFVHV 75 (76)
T ss_pred CCeEEEEEEceeeCCCEEEEEECCEECCCCCCcceEEccCCEEEECCCChhhCEEEEEEEEccCCeEEEeEEEEE
Confidence 678999999999999999999999877532 3478999999999999999999999998887777765
No 43
>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=99.51 E-value=1.5e-13 Score=83.22 Aligned_cols=65 Identities=32% Similarity=0.653 Sum_probs=55.2
Q ss_pred CEEEEeEeCCCCCceEEEEECCccCCCC------CCCeEEeccCCCCCCeEEEEEEEcCCCCceEEEEEEE
Q psy3045 151 PAQFTCKYEGNPVKTISWMKDGKPVPDH------NEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKL 215 (267)
Q Consensus 151 ~v~l~C~~~~~p~~~~~W~~~~~~~~~~------~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v 215 (267)
++.|.|.+.|.|.|.++|++++..+... ....|.|..+..+|+|.|+|.|.|..|....+..|.|
T Consensus 1 ~v~l~C~~~G~P~p~v~W~k~g~~~~~~~~~~~~~~~~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~L~V 71 (71)
T cd05723 1 DVIFECEVTGKPTPTVKWVKNGDMVIPSDYFKIVKEHNLQVLGLVKSDEGFYQCIAENDVGNVQASAQLII 71 (71)
T ss_pred CEEEEEEEEEeCCCEEEEEECCeECCCCCCEEEEecCCEEEEcCCcccCEEEEEEEEcCCCEEEEEEEEEC
Confidence 4789999999999999999999876543 2356888899999999999999999999888777653
No 44
>KOG3515|consensus
Probab=99.50 E-value=1.3e-13 Score=115.43 Aligned_cols=215 Identities=20% Similarity=0.305 Sum_probs=138.3
Q ss_pred CCCcccCCCCceeEEecCCCeEEEEEEecc------eeeeecccCcceeccccCCceEEEEeeEEEEeecccCCCeeEEE
Q psy3045 12 KAPTFSSVSDIIRFKKPGGESFALLCEAQE------NMWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYLC 85 (267)
Q Consensus 12 ~~P~~~~~~~~~~~~v~~g~~v~l~C~~~~------~~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C 85 (267)
.+|.....+ ... .+..|+.|.|.|.+.+ ++|++...+.. ..+.......|......+..-+.|.|
T Consensus 6 ~~pv~~~~~-l~~-~~~~g~~v~l~C~v~~~pp~~~~eW~h~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~c 76 (741)
T KOG3515|consen 6 NVPVCESSS-LTV-GLRLGEDVPLPCRVNSNPPEIDVEWYHSTSGEH-------GRYATIADPTLVTTGDVRDTVAELNC 76 (741)
T ss_pred CCccccCCC-CCh-hhccCCcceeeeecCCCCCCcceEEEecCcccc-------cccccccCCceeeecchhhhhhhhhh
Confidence 344444333 234 8999999999999999 99999643322 22223344567777777777789999
Q ss_pred EEEcCCCc-cEEEEEEEEEeccccccCCceEEEeCCCceEEEEEeecCCCcccccCCceEEEecCCCEEEEeEeC--CCC
Q psy3045 86 VVNNSVGG-ESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYE--GNP 162 (267)
Q Consensus 86 ~~~~~~~~-~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~--~~p 162 (267)
++.|..+. ......+.|..++......... ....+..+.+.|.+. +.|
T Consensus 77 ~a~ns~~~~~~~~~~l~v~~~pa~~~~~~e~-----------------------------~~~~~~vvqi~c~~~~~~~P 127 (741)
T KOG3515|consen 77 RAFNSVGMPSRCPMILDVDYPPACLPELGEI-----------------------------FQVDKGVVQIICSAKVAGRP 127 (741)
T ss_pred hhcccccCceecceeeccccCccccccccch-----------------------------hhhcCCeEEEEEeecCCCCC
Confidence 99988655 3455556665544322221111 444577899999654 457
Q ss_pred CceEEEEECCccCCC-----------------CCCCeEEeccCCCCCCeEEEEEEEcCC---CCceEEEEEEEecccCCC
Q psy3045 163 VKTISWMKDGKPVPD-----------------HNEPVFRIDSVRKEDKGMYQCVIRNEQ---ESAQASGELKLGGRFDPP 222 (267)
Q Consensus 163 ~~~~~W~~~~~~~~~-----------------~~~~~l~i~~~~~~d~g~y~C~~~~~~---~~~~~~~~l~v~~~~~~p 222 (267)
.+++.|.+++..... .....+.+......+.|.|+|.+.++. ........+.+.......
T Consensus 128 ~~nlrW~~n~r~e~~~~~~~~~~~~~a~gss~t~~s~l~~~v~Rka~~g~~tC~A~nr~s~~l~~~~~~~i~v~~~~~~~ 207 (741)
T KOG3515|consen 128 NPNLRWGFNNRAELNAVNQRGRVGAGALGSSYTEPSLLKQTVSRKADNGNYTCPANNRNSPGLSFAKQLTIIVEAPCKGI 207 (741)
T ss_pred CcceeeeeccEEeecccCCcccccccccCceeccccceeeEEEEecCCceeEcccccccCccccccceeEeecccccccc
Confidence 889999987654321 113456677777889999999999853 333333334443221122
Q ss_pred eeecCCceeEEecCCcEEEEEEee-cCCCCcEEEEECCEEcCC
Q psy3045 223 VIKESFSDETLNPGPNYYFKCIAS-GNPTPEISWYLDGKKLVN 264 (267)
Q Consensus 223 ~~~~~~~~~~~~~g~~~~l~C~~~-~~p~~~i~W~~~~~~l~~ 264 (267)
.+.....-..+.+|+.+.|.|.+. |+|.+.++||++...+..
T Consensus 208 ~~~~~~~~qsF~~g~~inlvc~~~gg~P~~~~~w~~~s~~~~~ 250 (741)
T KOG3515|consen 208 GITGAQEQQSFTEGQTINLVCNAQGGNPSQQQTWYKDSRPQSE 250 (741)
T ss_pred eecchhhcCcccccceEEEEehhhcCCcchhhhhccccccchh
Confidence 222222225678899999999776 588899999999877654
No 45
>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin. Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.50 E-value=1.7e-13 Score=83.54 Aligned_cols=67 Identities=30% Similarity=0.513 Sum_probs=58.0
Q ss_pred CCCEEEEeEeCCCCCceEEEEECCccCCCC------CCCeEEeccCCCCCCeEEEEEEEcCCCCceEEEEEEE
Q psy3045 149 GRPAQFTCKYEGNPVKTISWMKDGKPVPDH------NEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKL 215 (267)
Q Consensus 149 g~~v~l~C~~~~~p~~~~~W~~~~~~~~~~------~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v 215 (267)
|+.+.|.|.+.|.|.+.+.|++++..+... ....|.|.+++.+|+|.|+|.|.|..|....+..|.|
T Consensus 1 G~~v~L~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 73 (73)
T cd04969 1 GGDVIIECKPKAAPKPTISWSKGTELLTNSSRICIWPDGSLEILNVTKSDEGKYTCFAENFFGKANSTGSLSV 73 (73)
T ss_pred CCeEEEEEeeeEcCCCEEEEEECCEEcccCCCEEECCCCeEEEccCChhHCEEEEEEEECCCCceEEEEEEEC
Confidence 678999999999999999999999877533 2467999999999999999999999999888777653
No 46
>cd04968 Ig3_Contactin_like Third Ig domain of contactin. Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.50 E-value=3.5e-13 Score=85.45 Aligned_cols=82 Identities=20% Similarity=0.255 Sum_probs=64.7
Q ss_pred CCcccCCCCceeEEecCCCeEEEEEEecc-----eeeeecccCcceeccccCCceEEEEeeEEEEeecccCCCeeEEEEE
Q psy3045 13 APTFSSVSDIIRFKKPGGESFALLCEAQE-----NMWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYLCVV 87 (267)
Q Consensus 13 ~P~~~~~~~~~~~~v~~g~~v~l~C~~~~-----~~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~ 87 (267)
||.+...+ .+..+.+|+++.|.|.+.+ +.|++++.... ........+..|.|.+++.+|+|.|+|.+
T Consensus 1 p~~~~~~p--~~~~~~~g~~v~l~C~~~g~P~p~v~W~k~~~~~~------~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a 72 (88)
T cd04968 1 PSIIVVFP--KDTYALKGQNVTLECFALGNPVPQIKWRKVDGSMP------SSAEISMSGAVLKIPNIQFEDEGTYECEA 72 (88)
T ss_pred CCcEEECC--CceEEeCCCcEEEEEEeeEeCCCEEEEEECCCcCC------CccEEEEeCCEEEECCCCcccCEEEEEEE
Confidence 45666666 7888999999999999988 99999633211 11222345678999999999999999999
Q ss_pred EcCCCccEEEEEEEE
Q psy3045 88 NNSVGGESVETVLTV 102 (267)
Q Consensus 88 ~~~~~~~~~~~~l~V 102 (267)
.|..|.......|.|
T Consensus 73 ~N~~G~~~~~~~l~V 87 (88)
T cd04968 73 ENIKGKDTHQGRIYV 87 (88)
T ss_pred EECCCcEEEEEEEEE
Confidence 999999888888776
No 47
>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=99.49 E-value=2.8e-13 Score=87.67 Aligned_cols=74 Identities=28% Similarity=0.504 Sum_probs=60.0
Q ss_pred CceEEEecCCCEEEEeEeCCCCCceEEEEEC--CccCCC--------------CCCCeEEeccCCCCCCeEEEEEEEcCC
Q psy3045 141 PTVQTIDFGRPAQFTCKYEGNPVKTISWMKD--GKPVPD--------------HNEPVFRIDSVRKEDKGMYQCVIRNEQ 204 (267)
Q Consensus 141 ~~~~~~~~g~~v~l~C~~~~~p~~~~~W~~~--~~~~~~--------------~~~~~l~i~~~~~~d~g~y~C~~~~~~ 204 (267)
+.+..+.+|+.++|.|.+.|.|.|.+.|+++ +..+.. .....|.|.+++.+|+|.|+|.|.|..
T Consensus 8 ~~~~~~~~G~~v~l~C~~~G~P~p~i~W~k~~~g~~~~~~~~~~~~r~~v~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~ 87 (98)
T cd05870 8 LKNETTVENGAATLSCKAEGEPIPEITWKRASDGHTFSEGDKSPDGRIEVKGQHGESSLHIKDVKLSDSGRYDCEAASRI 87 (98)
T ss_pred eccEEEcCCCcEEEEEecccCCCCeEEEEECCCCceeccCCcCcCceEEEeecCCeeEEEEeeCCcCCCEEEEEEEeccC
Confidence 3455888999999999999999999999994 333321 123579999999999999999999999
Q ss_pred CCceEEEEEE
Q psy3045 205 ESAQASGELK 214 (267)
Q Consensus 205 ~~~~~~~~l~ 214 (267)
|....+..|.
T Consensus 88 G~~~~~~~l~ 97 (98)
T cd05870 88 GGHQKSMYLD 97 (98)
T ss_pred CcceeEEEEe
Confidence 9888776664
No 48
>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins. Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.
Probab=99.49 E-value=2.5e-13 Score=86.81 Aligned_cols=81 Identities=22% Similarity=0.333 Sum_probs=63.9
Q ss_pred CCCcccCCCCceeEEecCCCeEEEEEEecc-----eeeeecccCcceeccccCCceEEE----EeeEEEEeecccCCCee
Q psy3045 12 KAPTFSSVSDIIRFKKPGGESFALLCEAQE-----NMWFKFIEGSSRKVAVPLNDRVKQ----VSGTLIIKEAKVEDSGK 82 (267)
Q Consensus 12 ~~P~~~~~~~~~~~~v~~g~~v~l~C~~~~-----~~W~~~~~~~~~~~~~~~~~~~~~----~~~~l~i~~~~~~d~G~ 82 (267)
.||.|...| .+..+.+|+++.|.|.+.+ +.|++++.. +....++.. ..++|.|.++..+|+|.
T Consensus 2 ~~~~~~~~p--~~~~~~~G~~~~L~C~~~g~P~p~v~W~k~g~~------l~~~~~~~~~~~~~~~~L~i~~~~~~D~G~ 73 (92)
T cd05747 2 LPATILTKP--RSLTVSEGESARFSCDVDGEPAPTVTWMREGQI------IVSSQRHQITSTEYKSTFEISKVQMSDEGN 73 (92)
T ss_pred CCCcccccC--ccEEEeCCCcEEEEEEEeecCCCEEEEEECCEE------CCCCCcEEEEEcCCeeEEEECCCCcccCEe
Confidence 378888887 7899999999999999999 999996321 111223322 23589999999999999
Q ss_pred EEEEEEcCCCccEEEEEE
Q psy3045 83 YLCVVNNSVGGESVETVL 100 (267)
Q Consensus 83 Y~C~~~~~~~~~~~~~~l 100 (267)
|+|.+.|..|.....+.|
T Consensus 74 Y~C~a~N~~G~~~~~~~l 91 (92)
T cd05747 74 YTVVVENSEGKQEAQFTL 91 (92)
T ss_pred EEEEEEcCCCCEeEEEEe
Confidence 999999999987776655
No 49
>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.
Probab=99.49 E-value=5.8e-13 Score=82.43 Aligned_cols=70 Identities=24% Similarity=0.479 Sum_probs=58.2
Q ss_pred EEEecCCCEEEEeEeCCCCCceEEEEECCccCCCCC-----CCeEEeccCCCCCCeEEEEEEEcCCCCceEEEEEE
Q psy3045 144 QTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHN-----EPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELK 214 (267)
Q Consensus 144 ~~~~~g~~v~l~C~~~~~p~~~~~W~~~~~~~~~~~-----~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~ 214 (267)
..+.+|+.+.|.|.+.+. .+.+.|+++|.++.... ...|.|.++..+|+|.|+|.|.|..+.....+.+.
T Consensus 4 ~~~~~G~~v~l~C~~~~~-~~~v~W~k~g~~l~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~a~n~~g~~~~~~~v~ 78 (79)
T cd04973 4 YSAHPGDLLQLRCRLRDD-VQSINWTKDGVQLGENNRTRITGEEVQIKDAVPRDSGLYACVTSSPSGSDTTYFSVN 78 (79)
T ss_pred EEecCCCCEEEEEEecCC-CceEEEeeCCcCCCCCceEEEeCCEEEECCCChhhCEEEEEEEeCCCCcccEEEEEe
Confidence 377889999999999886 56899999999886532 45699999999999999999999988766665543
No 50
>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.
Probab=99.49 E-value=3.3e-13 Score=86.04 Aligned_cols=74 Identities=26% Similarity=0.447 Sum_probs=61.9
Q ss_pred CceEEEecCCCEEEEeEeCCCCCceEEEEECCccCCCCC----------CCeEEeccCCCCCCeEEEEEEEcCCCCceEE
Q psy3045 141 PTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHN----------EPVFRIDSVRKEDKGMYQCVIRNEQESAQAS 210 (267)
Q Consensus 141 ~~~~~~~~g~~v~l~C~~~~~p~~~~~W~~~~~~~~~~~----------~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~ 210 (267)
+....+.+|+.+.|.|.+.+.|.+.+.|++++..+.... ...|.|..+..+|+|.|+|.|.|..|....+
T Consensus 8 p~~v~v~eG~~v~L~C~v~g~P~p~i~W~k~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~ 87 (92)
T cd05891 8 PDVVTIMEGKTLNLTCTVFGNPDPEVIWFKNDQDIELSEHYSVKLEQGKYASLTIKGVTSEDSGKYSINVKNKYGGETVD 87 (92)
T ss_pred CCcEEEcCCCEEEEEEEEEEeCCCeEEEEECCEECCCCCCEEEEEcCCCEEEEEECCCChhhCEEEEEEEEeCCCceeeE
Confidence 445688999999999999999999999999987764321 1378999999999999999999999988776
Q ss_pred EEEE
Q psy3045 211 GELK 214 (267)
Q Consensus 211 ~~l~ 214 (267)
..+.
T Consensus 88 ~~v~ 91 (92)
T cd05891 88 VTVS 91 (92)
T ss_pred EEEE
Confidence 6654
No 51
>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=99.49 E-value=2.7e-13 Score=82.09 Aligned_cols=64 Identities=25% Similarity=0.512 Sum_probs=55.3
Q ss_pred EEEEeEeCCCCCceEEEEECCccCCCC------CCCeEEeccCCCCCCeEEEEEEEcCCCCceEEEEEEE
Q psy3045 152 AQFTCKYEGNPVKTISWMKDGKPVPDH------NEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKL 215 (267)
Q Consensus 152 v~l~C~~~~~p~~~~~W~~~~~~~~~~------~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v 215 (267)
+.|.|.+.|.|.|.+.|++++..+... ....|.|.++..+|+|.|+|.|.|..|....++.|.|
T Consensus 1 ~~L~C~~~G~P~P~v~W~k~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 70 (71)
T cd05876 1 LVLECIAEGLPTPEVHWDRIDGPLSPNRTKKLNNNKTLQLDNVLESDDGEYVCTAENSEGSARHHYTVTV 70 (71)
T ss_pred CEEEEEeeEecCCeEEEEECCcCCCCCceeEEcCCCEEEEcccCHHhCEEEEEEEEcCCCeEEEEEEEEE
Confidence 468999999999999999998776432 3568999999999999999999999998887777765
No 52
>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=99.49 E-value=4.3e-13 Score=84.07 Aligned_cols=68 Identities=24% Similarity=0.400 Sum_probs=57.9
Q ss_pred CCEEEEeEeCCCCCc--eEEEEECCccCCCC-------------CCCeEEeccCCCCCCeEEEEEEEcCCCCceEEEEEE
Q psy3045 150 RPAQFTCKYEGNPVK--TISWMKDGKPVPDH-------------NEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELK 214 (267)
Q Consensus 150 ~~v~l~C~~~~~p~~--~~~W~~~~~~~~~~-------------~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~ 214 (267)
+++.|.|.+.|.|.+ .+.|++++..+... ..+.|.|.+++..|+|.|+|.|.|..|...+++.|.
T Consensus 1 ~~~~L~C~a~g~P~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~A~n~~g~~~~~~~L~ 80 (85)
T cd05854 1 ENLTLQCHASHDPTMDLTFTWSLDDFPIDLDKPNGHYRRMEVKETIGDLVIVNAQLSHAGTYTCTAQTVVDSASASATLV 80 (85)
T ss_pred CcEEEEEEEecCCCCCeEEEEEECCeEccccCCCCcEEEEEecceEeEEEEccCChhhCeEEEEEEecCCCCEEEEEEEE
Confidence 468999999999866 68999999876431 235799999999999999999999999999999998
Q ss_pred Eec
Q psy3045 215 LGG 217 (267)
Q Consensus 215 v~~ 217 (267)
|..
T Consensus 81 V~~ 83 (85)
T cd05854 81 VRG 83 (85)
T ss_pred EEC
Confidence 863
No 53
>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=99.48 E-value=4e-13 Score=84.46 Aligned_cols=79 Identities=27% Similarity=0.401 Sum_probs=63.9
Q ss_pred ccCCCCceeEEecCCCeEEEEEEecc-----eeeeecccCcceeccccCCceEEEEeeEEEEeecccCCCeeEEEEEEcC
Q psy3045 16 FSSVSDIIRFKKPGGESFALLCEAQE-----NMWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYLCVVNNS 90 (267)
Q Consensus 16 ~~~~~~~~~~~v~~g~~v~l~C~~~~-----~~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~ 90 (267)
|...| .+..+..|+++.|.|.+.+ +.|++++. .+....++...++.|.|.++..+|+|.|+|.+.|.
T Consensus 2 ~~~~p--~~~~~~~G~~~~l~C~~~g~p~p~v~W~k~g~------~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~ 73 (85)
T cd05728 2 WLKVI--SDTEADIGSSLRWECKASGNPRPAYRWLKNGQ------PLASENRIEVEAGDLRITKLSLSDSGMYQCVAENK 73 (85)
T ss_pred ccccC--CccEEcCCCcEEEEEEeeEeCCCEEEEEECCE------ECCCCCeEEEeCCEEEEeeCCHHHCEEEEEEEECC
Confidence 44455 6889999999999999999 99999633 12234456666779999999999999999999999
Q ss_pred CCccEEEEEEEE
Q psy3045 91 VGGESVETVLTV 102 (267)
Q Consensus 91 ~~~~~~~~~l~V 102 (267)
.|.....+.|.|
T Consensus 74 ~G~~~~~~~l~V 85 (85)
T cd05728 74 HGTIYASAELAV 85 (85)
T ss_pred CCeEEEEEEEEC
Confidence 998877777654
No 54
>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the
Probab=99.48 E-value=6.9e-13 Score=84.19 Aligned_cols=73 Identities=25% Similarity=0.451 Sum_probs=60.1
Q ss_pred CceEEEecCCCEEEEeEeCCCCCceEEEEECCccCCCC------CCCeEEeccCCCCCCeEEEEEEEcCCCCceE-EEEE
Q psy3045 141 PTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDH------NEPVFRIDSVRKEDKGMYQCVIRNEQESAQA-SGEL 213 (267)
Q Consensus 141 ~~~~~~~~g~~v~l~C~~~~~p~~~~~W~~~~~~~~~~------~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~-~~~l 213 (267)
+.++.+.+|+.++|.|.+.|. .|.+.|++++..+... ....|.|..+..+|+|.|.|.|.|..|.... ...|
T Consensus 10 ~~~~~v~~g~~v~l~C~a~g~-~p~i~W~kng~~l~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~S~~~~L 88 (91)
T cd05740 10 VGNQPPEDNQPVTLTCEAEGQ-ATYIWWVNNGSLLVPPRLQLSNDNRTLTFNNVTRSDTGHYQCEASNEVSNMTSDPYIL 88 (91)
T ss_pred cCccccccCCcEEEEEEeCCC-CCEEEEEECCEECCCCCEEEeCCCCEEEECcCChhhCEEEEEEEEcCCCCEEeeeEEE
Confidence 345578899999999999999 9999999999876432 3468999999999999999999999987544 3444
Q ss_pred E
Q psy3045 214 K 214 (267)
Q Consensus 214 ~ 214 (267)
.
T Consensus 89 ~ 89 (91)
T cd05740 89 N 89 (91)
T ss_pred E
Confidence 3
No 55
>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the
Probab=99.48 E-value=3.1e-13 Score=85.81 Aligned_cols=83 Identities=23% Similarity=0.347 Sum_probs=63.5
Q ss_pred CCcccCCCCceeEEecCCCeEEEEEEecc----eeeeecccCcceeccccCCceEE--EEeeEEEEeecccCCCeeEEEE
Q psy3045 13 APTFSSVSDIIRFKKPGGESFALLCEAQE----NMWFKFIEGSSRKVAVPLNDRVK--QVSGTLIIKEAKVEDSGKYLCV 86 (267)
Q Consensus 13 ~P~~~~~~~~~~~~v~~g~~v~l~C~~~~----~~W~~~~~~~~~~~~~~~~~~~~--~~~~~l~i~~~~~~d~G~Y~C~ 86 (267)
+|.|...+...+..+.+|++++|.|.+.+ +.|++++... ...++. ..+.+|.|.+++.+|+|.|+|.
T Consensus 1 ~p~~~~~~~~~~~~v~~g~~v~l~C~a~g~~p~i~W~kng~~l-------~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~ 73 (91)
T cd05740 1 KPVINSNNSVGNQPPEDNQPVTLTCEAEGQATYIWWVNNGSLL-------VPPRLQLSNDNRTLTFNNVTRSDTGHYQCE 73 (91)
T ss_pred CCEeecccccCccccccCCcEEEEEEeCCCCCEEEEEECCEEC-------CCCCEEEeCCCCEEEECcCChhhCEEEEEE
Confidence 36676666556789999999999999999 9999963211 112232 2345899999999999999999
Q ss_pred EEcCCCc-cEEEEEEEE
Q psy3045 87 VNNSVGG-ESVETVLTV 102 (267)
Q Consensus 87 ~~~~~~~-~~~~~~l~V 102 (267)
|.|..|. .+..+.|.|
T Consensus 74 a~N~~G~~~S~~~~L~V 90 (91)
T cd05740 74 ASNEVSNMTSDPYILNV 90 (91)
T ss_pred EEcCCCCEEeeeEEEEe
Confidence 9999997 466666765
No 56
>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins. Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole
Probab=99.48 E-value=7.5e-13 Score=85.50 Aligned_cols=73 Identities=25% Similarity=0.405 Sum_probs=61.2
Q ss_pred ceEEEecCCCEEEEeEeCCCCCceEEEEECCccCCCC--------------CCCeEEeccCCCCCCeEEEEEEEcCCCCc
Q psy3045 142 TVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDH--------------NEPVFRIDSVRKEDKGMYQCVIRNEQESA 207 (267)
Q Consensus 142 ~~~~~~~g~~v~l~C~~~~~p~~~~~W~~~~~~~~~~--------------~~~~l~i~~~~~~d~g~y~C~~~~~~~~~ 207 (267)
.+..+.+|+.+.|.|.+.|.|.+.+.|++++..+... ....|.|.++..+|+|.|.|.|.|..|..
T Consensus 9 ~~~~~~~g~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~ 88 (96)
T cd05732 9 ENQTAVELEQITLTCEAEGDPIPEITWRRATRNFSEGDKSLDGRIVVRGHARVSSLTLKDVQLTDAGRYDCEASNRIGGD 88 (96)
T ss_pred CceeEecCCcEEEEEEEeEcCCCcEEEEECCcccCCCCccccceEEEeCCccEEEEEECcCCcCcCEEeEEEEEeCCCCc
Confidence 3457888999999999999999999999988655321 12479999999999999999999999998
Q ss_pred eEEEEEE
Q psy3045 208 QASGELK 214 (267)
Q Consensus 208 ~~~~~l~ 214 (267)
..++.|.
T Consensus 89 ~~s~~l~ 95 (96)
T cd05732 89 QQSMYLE 95 (96)
T ss_pred EEEEEEe
Confidence 7777665
No 57
>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs). Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c
Probab=99.47 E-value=6.3e-13 Score=82.12 Aligned_cols=67 Identities=21% Similarity=0.519 Sum_probs=55.9
Q ss_pred CceEEEecCCCEEEEeEeCCCCCc-eEEEEECCccCCC---CCCCeEEeccCCCCCCeEEEEEEEcCCCCceE
Q psy3045 141 PTVQTIDFGRPAQFTCKYEGNPVK-TISWMKDGKPVPD---HNEPVFRIDSVRKEDKGMYQCVIRNEQESAQA 209 (267)
Q Consensus 141 ~~~~~~~~g~~v~l~C~~~~~p~~-~~~W~~~~~~~~~---~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~ 209 (267)
+.+..+.+|+.+.|.|.+.|.|.| .|.|+++|.++.. ...+.|.|..+ .|.|.|.|.|.|..|....
T Consensus 5 P~~~~v~~G~~v~l~C~a~G~P~P~~I~W~k~g~~l~~~~~~~~s~L~i~~~--~d~g~Y~C~A~N~~G~~~s 75 (81)
T cd05749 5 PEDLSVTANTPFNLTCQAVGPPEPVEILWWQGGSPLGDPPAPSPSVLNVPGL--NETSKFSCEAHNAKGVTTS 75 (81)
T ss_pred CCceEEcCCCCEEEEEEeeeecCCeEEEEEECCEECCCCCCCCCCEEEEccc--cCCeEEEEEEEeccCcEEe
Confidence 455688999999999999999999 7999999998753 34567888776 4789999999999986554
No 58
>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....
Probab=99.47 E-value=2.7e-13 Score=86.55 Aligned_cols=85 Identities=31% Similarity=0.441 Sum_probs=64.6
Q ss_pred CcccCCCCceeEEecCCCeEEEEEEecc-----eeeeecccCcceeccccCCceEEEEeeEEEEeecccCCCeeEEEEEE
Q psy3045 14 PTFSSVSDIIRFKKPGGESFALLCEAQE-----NMWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYLCVVN 88 (267)
Q Consensus 14 P~~~~~~~~~~~~v~~g~~v~l~C~~~~-----~~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~ 88 (267)
|.|...+ .++.+.+|+++.|.|.+.+ +.|++++. .................+|.|.++..+|+|.|+|.+.
T Consensus 1 P~~~~~~--~~~~v~~G~~~~l~c~~~~~p~~~v~W~~~~~--~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~ 76 (90)
T PF07679_consen 1 PVFTKKP--KDVTVKEGESVTLECEVSGNPPPTVTWYKNGR--PLTSSQRYQIESDGGSSSLTIKNVTREDAGTYTCVAS 76 (90)
T ss_dssp EEEEEES--SEEEEETTSEEEEEEEEEESSSSEEEEEETTE--EEESSSSEEEEEETTEEEEEESSESGGGSEEEEEEEE
T ss_pred CEEEEec--CCEEEeCCCEEEEEEEEEeCCCCccccccccc--ceeeeeeeeeecccceeEEccCCCChhhCEEEEEEEE
Confidence 6677777 8999999999999999998 99999622 2211111111111245689999999999999999999
Q ss_pred cCCCccEEEEEEEE
Q psy3045 89 NSVGGESVETVLTV 102 (267)
Q Consensus 89 ~~~~~~~~~~~l~V 102 (267)
+..|.....+.|.|
T Consensus 77 n~~g~~~~~~~l~V 90 (90)
T PF07679_consen 77 NSSGEATASVNLTV 90 (90)
T ss_dssp ETTEEEEEEEEEEE
T ss_pred ECCCEEEEEEEEEC
Confidence 99888888877765
No 59
>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4. Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s
Probab=99.47 E-value=3.6e-13 Score=82.90 Aligned_cols=64 Identities=30% Similarity=0.658 Sum_probs=52.8
Q ss_pred EEEEeEeCCCCCceEEEEECCccCCCC--------CCCeEEeccCCCCCCeEEEEEEEcCCCCceEEEEEEE
Q psy3045 152 AQFTCKYEGNPVKTISWMKDGKPVPDH--------NEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKL 215 (267)
Q Consensus 152 v~l~C~~~~~p~~~~~W~~~~~~~~~~--------~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v 215 (267)
++|.|.+.|.|.|.+.|+|+|.++... ....|.|.++..+|+|.|.|.|.|..|....+..+.+
T Consensus 1 v~L~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~~~~~l 72 (77)
T cd05760 1 VTLRCHIDGHPRPTYQWFRDGTPLSDGQGNYSVSSKERTLTLRSAGPDDSGLYYCCAHNAFGSVCSSQNFTL 72 (77)
T ss_pred CEEEEEeeecCCCcEEEEECCEECCCCCccEEEeCCCCEEEEeeCCcccCEEEEEEEEeCCCeEeeCceEEE
Confidence 478999999999999999999887543 2357999999999999999999999987654444444
No 60
>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins. Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-
Probab=99.46 E-value=5.5e-13 Score=81.60 Aligned_cols=65 Identities=25% Similarity=0.509 Sum_probs=55.2
Q ss_pred CEEEEeEeCCCCCceEEEEECCccCCCC---------CCCeEEeccCCCCCCeEEEEEEEcCCCCceEEEEEEE
Q psy3045 151 PAQFTCKYEGNPVKTISWMKDGKPVPDH---------NEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKL 215 (267)
Q Consensus 151 ~v~l~C~~~~~p~~~~~W~~~~~~~~~~---------~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v 215 (267)
.+.|.|.+.|.|.|.+.|++++..+... ....|.|.++..+|+|.|+|.|.|..|....++.|.|
T Consensus 1 ~~~l~c~~~G~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V 74 (74)
T cd05748 1 SVRLEVPISGRPTPTVTWSKDGKPLKLSGRVQIETTASSTSLVIKNAERSDSGKYTLTLKNPAGEKSATINVKV 74 (74)
T ss_pred CEEEEeeEeeeCCCeEEEEECCEEcCCCCeEEEEECCCeEEEEECCCCcCcCEEEEEEEECCCccEEEEEEEEC
Confidence 3689999999999999999999887432 2457999999999999999999999998877776643
No 61
>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin. Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).
Probab=99.46 E-value=5.2e-13 Score=81.66 Aligned_cols=64 Identities=22% Similarity=0.407 Sum_probs=54.1
Q ss_pred EEEEeEeCCCCCceEEEEECCccCCCCC-----------CCeEEeccCCCCCCeEEEEEEEcCCCCceEEEEEEE
Q psy3045 152 AQFTCKYEGNPVKTISWMKDGKPVPDHN-----------EPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKL 215 (267)
Q Consensus 152 v~l~C~~~~~p~~~~~W~~~~~~~~~~~-----------~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v 215 (267)
+.|.|.+.|.|.|.+.|+|++..+.... ...|.|..++.+|+|.|+|.|.|..|....++.|.|
T Consensus 1 v~L~C~v~G~P~P~v~W~k~~~~i~~~~~r~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~v 75 (75)
T cd05744 1 VRLECRVSAIPPPQIFWKKNNEMLTYNTDRISLYQDNCGRICLLIQNANKEDAGWYTVSAVNEAGVVSCNARLDV 75 (75)
T ss_pred CEEEEEEeecCCCeEEEEECCEECCCCCCcEEEEEcCCCeEEEEECCCCcccCEEEEEEEEcCCCcEEEEEEEeC
Confidence 4789999999999999999998875321 125999999999999999999999998888776653
No 62
>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=99.46 E-value=6e-13 Score=80.24 Aligned_cols=63 Identities=30% Similarity=0.637 Sum_probs=54.0
Q ss_pred EEEEeEeCCCCCceEEEEECCccCCCC-----CCCeEEeccCCCCCCeEEEEEEEcCCCCceEEEEEE
Q psy3045 152 AQFTCKYEGNPVKTISWMKDGKPVPDH-----NEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELK 214 (267)
Q Consensus 152 v~l~C~~~~~p~~~~~W~~~~~~~~~~-----~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~ 214 (267)
+.|.|.+.|.|.|.+.|++++..+... ....|.|.++..+|+|.|+|.|.|..|....+..|.
T Consensus 1 v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~ 68 (69)
T cd05725 1 VEFQCEVGGDPVPTVLWRKEDGELPKGRAEILDDKSLKIRNVTAGDEGSYTCEAENMVGKIEASASLT 68 (69)
T ss_pred CEEEEECccCCCCEEEEEECCccCCCCcEEEeeCCEEEECcCChhHCEEEEEEEEcCCCcEEEEEEEE
Confidence 478999999999999999998766543 356899999999999999999999999887776664
No 63
>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.
Probab=99.46 E-value=5.4e-13 Score=83.56 Aligned_cols=70 Identities=26% Similarity=0.578 Sum_probs=59.2
Q ss_pred EEecCCCEEEEeEeCCCCCceEEEEECCccCCCC-------CCCeEEeccCCCCCCeEEEEEEEcCCCCceEEEEEE
Q psy3045 145 TIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDH-------NEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELK 214 (267)
Q Consensus 145 ~~~~g~~v~l~C~~~~~p~~~~~W~~~~~~~~~~-------~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~ 214 (267)
....|+.+.|.|.+.+.|.|.+.|++++..+... ....|.|.++..+|+|.|+|.+.|..|....++.|.
T Consensus 5 ~~~~G~~v~L~C~~~g~p~p~i~W~k~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~v~ 81 (82)
T cd05856 5 ARPVGSSVRLKCVASGNPRPDITWLKDNKPLTPTEIGESRKKKWTLSLKNLKPEDSGKYTCHVSNRAGEINATYKVD 81 (82)
T ss_pred eccCCCeEEEEEEeeEeCCCcEEEEECCcCCcCCccceecCceEEEEEccCChhhCEEEEEEEEcCCccEEEEEEEe
Confidence 5667999999999999999999999999877432 235799999999999999999999999877666554
No 64
>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....
Probab=99.46 E-value=2.6e-13 Score=86.64 Aligned_cols=75 Identities=33% Similarity=0.670 Sum_probs=64.7
Q ss_pred CceEEEecCCCEEEEeEeCCCCCceEEEEECCccCCCC---------CCCeEEeccCCCCCCeEEEEEEEcCCCCceEEE
Q psy3045 141 PTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDH---------NEPVFRIDSVRKEDKGMYQCVIRNEQESAQASG 211 (267)
Q Consensus 141 ~~~~~~~~g~~v~l~C~~~~~p~~~~~W~~~~~~~~~~---------~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~ 211 (267)
+....+.+|+++.|.|.+.+.|.+.+.|++++..+... ....|.|.++..+|+|.|+|.|.|..+....++
T Consensus 7 ~~~~~v~~G~~~~l~c~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~n~~g~~~~~~ 86 (90)
T PF07679_consen 7 PKDVTVKEGESVTLECEVSGNPPPTVTWYKNGRPLTSSQRYQIESDGGSSSLTIKNVTREDAGTYTCVASNSSGEATASV 86 (90)
T ss_dssp SSEEEEETTSEEEEEEEEEESSSSEEEEEETTEEEESSSSEEEEEETTEEEEEESSESGGGSEEEEEEEEETTEEEEEEE
T ss_pred cCCEEEeCCCEEEEEEEEEeCCCCcccccccccceeeeeeeeeecccceeEEccCCCChhhCEEEEEEEEECCCEEEEEE
Confidence 45568999999999999999999999999999887643 357899999999999999999999988877777
Q ss_pred EEEE
Q psy3045 212 ELKL 215 (267)
Q Consensus 212 ~l~v 215 (267)
.|.|
T Consensus 87 ~l~V 90 (90)
T PF07679_consen 87 NLTV 90 (90)
T ss_dssp EEEE
T ss_pred EEEC
Confidence 6654
No 65
>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin. Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.
Probab=99.45 E-value=4.1e-13 Score=80.86 Aligned_cols=62 Identities=39% Similarity=0.623 Sum_probs=53.5
Q ss_pred EEEEeEeCCCCCceEEEEECCccCCCC------CCCeEEeccCCCCCCeEEEEEEEcCCCCceEEEEE
Q psy3045 152 AQFTCKYEGNPVKTISWMKDGKPVPDH------NEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGEL 213 (267)
Q Consensus 152 v~l~C~~~~~p~~~~~W~~~~~~~~~~------~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l 213 (267)
|.|.|.+.|.|.|.+.|++++..+... ....|.|.++..+|+|.|+|.|.|..|....+..|
T Consensus 1 v~L~C~~~g~P~p~i~W~k~g~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~L 68 (69)
T cd05746 1 VQIPCSAQGDPEPTITWNKDGVQVTESGKFHISPEGYLAIRDVGVADQGRYECVARNTIGYASVSMVL 68 (69)
T ss_pred CEeEecceEeCCCEEEEEECCEECCCCCCEEECCCCEEEECcCChhhCEEEEEEEECCCCcEEEEEEe
Confidence 478999999999999999999877532 35689999999999999999999999988776654
No 66
>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.
Probab=99.45 E-value=1.1e-12 Score=81.14 Aligned_cols=74 Identities=24% Similarity=0.388 Sum_probs=58.3
Q ss_pred eeEEecCCCeEEEEEEecc----eeeeecccCcceeccccCCceEEEEeeEEEEeecccCCCeeEEEEEEcCCCccEEEE
Q psy3045 23 IRFKKPGGESFALLCEAQE----NMWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYLCVVNNSVGGESVET 98 (267)
Q Consensus 23 ~~~~v~~g~~v~l~C~~~~----~~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~ 98 (267)
.+..+.+|+++.|.|.+.+ +.|+|++.. +....++...+..|.|.++..+|+|.|+|.+.|..|.....+
T Consensus 2 ~~~~~~~G~~v~l~C~~~~~~~~v~W~k~g~~------l~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~a~n~~g~~~~~~ 75 (79)
T cd04973 2 ESYSAHPGDLLQLRCRLRDDVQSINWTKDGVQ------LGENNRTRITGEEVQIKDAVPRDSGLYACVTSSPSGSDTTYF 75 (79)
T ss_pred CcEEecCCCCEEEEEEecCCCceEEEeeCCcC------CCCCceEEEeCCEEEECCCChhhCEEEEEEEeCCCCcccEEE
Confidence 5778999999999999998 999996322 222345555566899999999999999999999888766665
Q ss_pred EEEE
Q psy3045 99 VLTV 102 (267)
Q Consensus 99 ~l~V 102 (267)
.|.|
T Consensus 76 ~v~V 79 (79)
T cd04973 76 SVNV 79 (79)
T ss_pred EEeC
Confidence 5543
No 67
>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun
Probab=99.44 E-value=6.7e-13 Score=82.19 Aligned_cols=62 Identities=21% Similarity=0.379 Sum_probs=52.5
Q ss_pred EEEeEeCCCCCceEEEEECCccCCCCC----------------CCeEEeccCCCCCCeEEEEEEEcCCCCceEEEEEE
Q psy3045 153 QFTCKYEGNPVKTISWMKDGKPVPDHN----------------EPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELK 214 (267)
Q Consensus 153 ~l~C~~~~~p~~~~~W~~~~~~~~~~~----------------~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~ 214 (267)
.|.|.+.|.|.|.++|+++|..+.... ...|.|.++..+|+|.|+|.|.|..|....++.+.
T Consensus 2 ~i~~~v~G~P~P~v~W~k~g~~i~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~~~ 79 (81)
T cd04971 2 CIPFTVRGNPKPTLTWYHNGAVLNESDYIRTEIHYEVTTPTEYHGCLQFDNPTHVNNGNYTLVASNEYGQDSKSISAH 79 (81)
T ss_pred eEEEEeEeeCCCcEEEEECCEECcCCCceeEEEEeecccccccEEEEEECCCCcccCeEEEEEEEeCCCCeeeEEEee
Confidence 367999999999999999998886432 23589999999999999999999999888776654
No 68
>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins. Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res
Probab=99.44 E-value=1.2e-12 Score=85.32 Aligned_cols=88 Identities=26% Similarity=0.408 Sum_probs=59.2
Q ss_pred CCcccCCCCceeEEecCCCeEEEEEEecc-----eeeeecccCcceeccccCCceEEEEeeEEE---E--eecccCCCee
Q psy3045 13 APTFSSVSDIIRFKKPGGESFALLCEAQE-----NMWFKFIEGSSRKVAVPLNDRVKQVSGTLI---I--KEAKVEDSGK 82 (267)
Q Consensus 13 ~P~~~~~~~~~~~~v~~g~~v~l~C~~~~-----~~W~~~~~~~~~~~~~~~~~~~~~~~~~l~---i--~~~~~~d~G~ 82 (267)
||.|...+ .+..+.+|+++.|.|.+.+ +.|++++.............+....++.+. + ..+..+|+|.
T Consensus 1 ~P~i~~~p--~~~~v~~G~~~~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~D~G~ 78 (100)
T cd07693 1 PPRIVEHP--SDLIVSKGDPATLNCKAEGRPTPTIQWLKNGQPLETDKDDPRSHRIVLPSGSLFFLRVVHGRKGRSDEGV 78 (100)
T ss_pred CCeEEecC--ceeEEcCCCeEEEEeeCCcCCCCEEEEEECCEECccccCCCCcceEEecCCcEEEEEeeccCCCcCcCEE
Confidence 58888887 7899999999999999998 999996432211000011112222222222 2 2236889999
Q ss_pred EEEEEEcCCCc-cEEEEEEEE
Q psy3045 83 YLCVVNNSVGG-ESVETVLTV 102 (267)
Q Consensus 83 Y~C~~~~~~~~-~~~~~~l~V 102 (267)
|+|.+.|..|. .+..+.|.|
T Consensus 79 Y~C~a~N~~G~~~s~~~~l~v 99 (100)
T cd07693 79 YVCVAHNSLGEAVSRNASLEV 99 (100)
T ss_pred EEEEEEccccceecceEEEEe
Confidence 99999999998 667777665
No 69
>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins. Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res
Probab=99.44 E-value=1.4e-12 Score=85.04 Aligned_cols=77 Identities=29% Similarity=0.602 Sum_probs=56.6
Q ss_pred cCCceEEEecCCCEEEEeEeCCCCCceEEEEECCccCCCC-----------CCCeEE---ec--cCCCCCCeEEEEEEEc
Q psy3045 139 VEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDH-----------NEPVFR---ID--SVRKEDKGMYQCVIRN 202 (267)
Q Consensus 139 ~~~~~~~~~~g~~v~l~C~~~~~p~~~~~W~~~~~~~~~~-----------~~~~l~---i~--~~~~~d~g~y~C~~~~ 202 (267)
..+....+.+|+.+.|.|.+.|.|.|.+.|+|+|..+... ....+. +. .+..+|+|.|+|.|.|
T Consensus 6 ~~p~~~~v~~G~~~~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~D~G~Y~C~a~N 85 (100)
T cd07693 6 EHPSDLIVSKGDPATLNCKAEGRPTPTIQWLKNGQPLETDKDDPRSHRIVLPSGSLFFLRVVHGRKGRSDEGVYVCVAHN 85 (100)
T ss_pred ecCceeEEcCCCeEEEEeeCCcCCCCEEEEEECCEECccccCCCCcceEEecCCcEEEEEeeccCCCcCcCEEEEEEEEc
Confidence 3345568889999999999999999999999999887541 111221 21 2368899999999999
Q ss_pred CCCC-ceEEEEEEE
Q psy3045 203 EQES-AQASGELKL 215 (267)
Q Consensus 203 ~~~~-~~~~~~l~v 215 (267)
..|. ......|.|
T Consensus 86 ~~G~~~s~~~~l~v 99 (100)
T cd07693 86 SLGEAVSRNASLEV 99 (100)
T ss_pred cccceecceEEEEe
Confidence 9988 444555543
No 70
>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).
Probab=99.44 E-value=1.3e-12 Score=78.36 Aligned_cols=63 Identities=22% Similarity=0.548 Sum_probs=51.7
Q ss_pred CCCEEEEeEeCCCCCceEEEEECCccCCCCC-----CCeEEeccCCCCCCeEEEEEEEcCCCCceEEEEE
Q psy3045 149 GRPAQFTCKYEGNPVKTISWMKDGKPVPDHN-----EPVFRIDSVRKEDKGMYQCVIRNEQESAQASGEL 213 (267)
Q Consensus 149 g~~v~l~C~~~~~p~~~~~W~~~~~~~~~~~-----~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l 213 (267)
|+.+.|.|.+.|.|.|.+.|++++.++.... ...|.|.++ .|+|.|+|.|.|..|....+..|
T Consensus 1 G~~v~L~C~a~G~P~P~v~W~k~g~~l~~~~~~~~~~~~L~i~~~--~d~G~Y~C~A~N~~G~~~~~a~l 68 (69)
T cd05739 1 GGSVNLTCVAVGAPMPYVKWMKGGEELTKEDEMPVGRNVLELTNI--YESANYTCVAISSLGMIEATAQV 68 (69)
T ss_pred CCeEEEEEEeeecCCCEEEEEECCEECCCccceecCccEEEEecc--ccCeeEEEEEEeCCCEEEEEEEE
Confidence 6789999999999999999999998775432 346778776 47999999999999987766554
No 71
>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr
Probab=99.44 E-value=1.8e-12 Score=83.64 Aligned_cols=87 Identities=25% Similarity=0.397 Sum_probs=62.9
Q ss_pred CCcccCCCCceeEEecCCCeEEEEEEecc-----eeeeecccCcceeccccCCceEEE----EeeEEEEeecccCCCeeE
Q psy3045 13 APTFSSVSDIIRFKKPGGESFALLCEAQE-----NMWFKFIEGSSRKVAVPLNDRVKQ----VSGTLIIKEAKVEDSGKY 83 (267)
Q Consensus 13 ~P~~~~~~~~~~~~v~~g~~v~l~C~~~~-----~~W~~~~~~~~~~~~~~~~~~~~~----~~~~l~i~~~~~~d~G~Y 83 (267)
.|+|...+ ....+..|++++|.|.+.+ +.|++++...... ......++.. ..+.|.|.++..+|+|.|
T Consensus 2 ~p~i~~~~--~~~~~~~g~~v~l~C~~~G~P~P~v~W~~~~~~~~~~-~~~~~~~~~v~~~~~~~~L~I~~v~~~D~G~Y 78 (97)
T cd05869 2 KPKITYVE--NQTAMELEEQITLTCEASGDPIPSITWRTSTRNISSE-EKTLDGHIVVRSHARVSSLTLKYIQYTDAGEY 78 (97)
T ss_pred CceEEEcc--CceEEEcCCCEEEEEEeeEeCCCEEEEEECCccccCC-ccccCccEEEEcCccEEEEEEecCccCcCEEE
Confidence 57787666 4555666899999999998 9999963221111 0111223221 235899999999999999
Q ss_pred EEEEEcCCCccEEEEEEEE
Q psy3045 84 LCVVNNSVGGESVETVLTV 102 (267)
Q Consensus 84 ~C~~~~~~~~~~~~~~l~V 102 (267)
+|.|.|..|..+..+.|.|
T Consensus 79 ~C~A~N~~G~~~~~~~l~v 97 (97)
T cd05869 79 LCTASNTIGQDSQSMYLEV 97 (97)
T ss_pred EEEEecCCCCeeEEEEEEC
Confidence 9999999999988888765
No 72
>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB. TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.
Probab=99.43 E-value=9.6e-13 Score=80.45 Aligned_cols=61 Identities=20% Similarity=0.450 Sum_probs=51.8
Q ss_pred EEeEeCCCCCceEEEEECCccCCCCC--------------CCeEEeccCCCCCCeEEEEEEEcCCCCceEEEEEE
Q psy3045 154 FTCKYEGNPVKTISWMKDGKPVPDHN--------------EPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELK 214 (267)
Q Consensus 154 l~C~~~~~p~~~~~W~~~~~~~~~~~--------------~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~ 214 (267)
|.|.+.|.|.|.++|+|||.++..+. ...|.|..+..+|+|.|+|.|+|..|+..+++.+.
T Consensus 3 i~~~v~G~P~Pti~W~kng~~l~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G~~~~~~~~~ 77 (79)
T cd05855 3 IPFTVKGNPKPTLQWFHEGAILNESEYICTKIHVINNTEYHGCLQLDNPTHLNNGIYTLVAKNEYGEDEKNVSAH 77 (79)
T ss_pred EEEEEeEeCCCceEEEECCEECCCCcceeeeeEeecccceEEEEEECCCCcccCEEEEEEEEcCCcccceEEEee
Confidence 67899999999999999999886432 23688999999999999999999999887776543
No 73
>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.
Probab=99.43 E-value=7.3e-13 Score=81.83 Aligned_cols=67 Identities=28% Similarity=0.485 Sum_probs=56.0
Q ss_pred CCCEEEEeEeCCCCCceEEEEECCccCCCC---------CCCeEEeccCCCCCCeEEEEEEEcCCCCceEEEEEEE
Q psy3045 149 GRPAQFTCKYEGNPVKTISWMKDGKPVPDH---------NEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKL 215 (267)
Q Consensus 149 g~~v~l~C~~~~~p~~~~~W~~~~~~~~~~---------~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v 215 (267)
|+++.|.|.+.|.|.|.+.|++++..+... ....|.|.++..+|.|.|+|.|.|..|.......+.+
T Consensus 1 G~~v~l~C~~~g~P~p~v~W~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~~~~ 76 (78)
T cd05743 1 GETVEFTCVATGVPTPIINWRLNWGHVPDSARVSITSEGGYGTLTIRDVKESDQGAYTCEAINTRGMVFGIPDGIL 76 (78)
T ss_pred CCEEEEEEEEEEecCCEEEEEECCeECCCCCCEEEEECCCEEEEEECCCChHHCEEEEEEEEecCCEEEecccEEE
Confidence 678999999999999999999998766532 2357999999999999999999999988766555544
No 74
>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin. Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.43 E-value=1.5e-12 Score=82.00 Aligned_cols=68 Identities=22% Similarity=0.452 Sum_probs=57.3
Q ss_pred CCEEEEeEeCCCCCc--eEEEEECCccCCCC-------------CCCeEEeccCCCCCCeEEEEEEEcCCCCceEEEEEE
Q psy3045 150 RPAQFTCKYEGNPVK--TISWMKDGKPVPDH-------------NEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELK 214 (267)
Q Consensus 150 ~~v~l~C~~~~~p~~--~~~W~~~~~~~~~~-------------~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~ 214 (267)
+++.|.|.+.+.|.+ .+.|+++|..+... ..+.|.|.+++.+|+|.|+|.|.|..+....+..|.
T Consensus 1 e~~~L~C~~~g~P~p~i~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~ 80 (85)
T cd04970 1 ESITLQCHASHDPTLDLTFTWSFNGVPIDFDKDGGHYRRVGGKDSNGDLMIRNAQLKHAGKYTCTAQTVVDSLSASADLI 80 (85)
T ss_pred CcEEEEEEEecCCCCCeEEEEEECCeEeeccCCCccEEEEecccccceEEEccCCHHhCeeeEEEEecCCCcEEEEEEEE
Confidence 468999999999866 67999999876421 246799999999999999999999999888888888
Q ss_pred Eec
Q psy3045 215 LGG 217 (267)
Q Consensus 215 v~~ 217 (267)
|.+
T Consensus 81 V~~ 83 (85)
T cd04970 81 VRG 83 (85)
T ss_pred EEC
Confidence 863
No 75
>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.
Probab=99.43 E-value=1.1e-12 Score=82.50 Aligned_cols=75 Identities=21% Similarity=0.280 Sum_probs=58.9
Q ss_pred eeEEecCCCeEEEEEEecc-----eeeeecccCcceeccccCCceEEE----EeeEEEEeecccCCCeeEEEEEEcCCCc
Q psy3045 23 IRFKKPGGESFALLCEAQE-----NMWFKFIEGSSRKVAVPLNDRVKQ----VSGTLIIKEAKVEDSGKYLCVVNNSVGG 93 (267)
Q Consensus 23 ~~~~v~~g~~v~l~C~~~~-----~~W~~~~~~~~~~~~~~~~~~~~~----~~~~l~i~~~~~~d~G~Y~C~~~~~~~~ 93 (267)
..+.+.+|+.+.|.|.+.| +.|++++.... ....++.. ..+.|.|.++..+|+|.|+|.+.|..|.
T Consensus 3 ~~~~v~~G~~v~l~c~~~G~P~P~v~W~k~~~~i~-----~~~~r~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~N~~G~ 77 (86)
T cd05894 3 NTIVVVAGNKLRLDVPISGEPAPTVTWSRGDKAFT-----ETEGRVRVESYKDLSSFVIEGAEREDEGVYTITVTNPVGE 77 (86)
T ss_pred CEEEEEcCCEEEEEeeEeecCCCeEEEEECCEECc-----cCCCeEEEEEcCCeEEEEECCCccCcCEEEEEEEEeCCCc
Confidence 5688999999999999998 99999643221 11223332 2468999999999999999999999999
Q ss_pred cEEEEEEEE
Q psy3045 94 ESVETVLTV 102 (267)
Q Consensus 94 ~~~~~~l~V 102 (267)
....+.|.|
T Consensus 78 ~~~~~~l~V 86 (86)
T cd05894 78 DHASLFVKV 86 (86)
T ss_pred EEEEEEEEC
Confidence 888777764
No 76
>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago
Probab=99.43 E-value=2.5e-12 Score=81.27 Aligned_cols=69 Identities=32% Similarity=0.626 Sum_probs=57.8
Q ss_pred CceEEEecCCCEEEEeEe-CCCCCceEEEEECCccCCCC-------CCCeEEeccCCCCCCeEEEEEEEcCCCCceE
Q psy3045 141 PTVQTIDFGRPAQFTCKY-EGNPVKTISWMKDGKPVPDH-------NEPVFRIDSVRKEDKGMYQCVIRNEQESAQA 209 (267)
Q Consensus 141 ~~~~~~~~g~~v~l~C~~-~~~p~~~~~W~~~~~~~~~~-------~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~ 209 (267)
+....+.+|+++.|.|.+ .+.|.+.+.|++++..+... ....|.|.++..+|+|.|+|.+.|..|....
T Consensus 3 p~~~~~~~G~~v~l~C~~~~g~p~p~i~W~k~g~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s 79 (86)
T cd05724 3 PSDTQVAVGEMAVLECSPPRGHPEPTVSWRKDGQPLNLDNERVRIVDDGNLLIAEARKSDEGTYKCVATNMVGERES 79 (86)
T ss_pred CccEEEeCCCCEEEEEECCCCCCCCEEEEEECCEECCCCCCCEEEccCCEEEEeECCcccCEEEEEEEEeccCceee
Confidence 344578899999999998 68899999999999876542 2468999999999999999999999887543
No 77
>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin. Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p
Probab=99.43 E-value=3.6e-12 Score=83.88 Aligned_cols=69 Identities=22% Similarity=0.377 Sum_probs=58.7
Q ss_pred cCCCEEEEeEeCCCCCceEEEEECCccCCCCC--------------CCeEEeccCC-CCCCeEEEEEEEcCCCCceEEEE
Q psy3045 148 FGRPAQFTCKYEGNPVKTISWMKDGKPVPDHN--------------EPVFRIDSVR-KEDKGMYQCVIRNEQESAQASGE 212 (267)
Q Consensus 148 ~g~~v~l~C~~~~~p~~~~~W~~~~~~~~~~~--------------~~~l~i~~~~-~~d~g~y~C~~~~~~~~~~~~~~ 212 (267)
.|..+.|.|.+.|.|.+.+.|++++..+...+ .+.|.|.++. .+|.|.|+|.|.|..|....++.
T Consensus 22 ~g~~v~L~C~a~G~P~p~i~W~k~g~~l~~~~~r~~~~~~~~~~~~~s~L~I~~v~~~~D~G~Y~C~A~N~~G~~~~~i~ 101 (109)
T cd05773 22 GSSDANLVCQAQGVPRVQFRWAKNGVPLDLGNPRYEETTEHTGTVHTSILTIINVSAALDYALFTCTAHNSLGEDSLDIQ 101 (109)
T ss_pred CCCEEEEEEECcccCCCEEEEEECCEECCCCCCeEEEEeeccCccceeEEEECcCCccCCCEEEEEEEEeCCccCcEEEE
Confidence 46789999999999999999999998775321 2468898887 58999999999999999988888
Q ss_pred EEEe
Q psy3045 213 LKLG 216 (267)
Q Consensus 213 l~v~ 216 (267)
|.+.
T Consensus 102 L~~~ 105 (109)
T cd05773 102 LVST 105 (109)
T ss_pred EEec
Confidence 8876
No 78
>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=99.43 E-value=9.3e-13 Score=79.11 Aligned_cols=64 Identities=25% Similarity=0.432 Sum_probs=52.1
Q ss_pred EEEEeEeCCCCCceEEEEECCccCCCC------CCCeEEeccCCCCCCeEEEEEEEcCCCCceEEEEEEE
Q psy3045 152 AQFTCKYEGNPVKTISWMKDGKPVPDH------NEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKL 215 (267)
Q Consensus 152 v~l~C~~~~~p~~~~~W~~~~~~~~~~------~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v 215 (267)
+.|.|.+.|.|.|.+.|+|++.++... ....|.|.++..+|+|.|+|.|.+..........+.+
T Consensus 1 ~~l~c~v~g~P~P~v~W~kdg~~l~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~a~~~~~~~~~~~~i~~ 70 (72)
T cd07702 1 YRLTPKVKAFPAPEVIWLKDGLPAAEKCSRYHVDGYSLVIKDVTEEDAGIYTILLGIKQYNLFKNLTITL 70 (72)
T ss_pred CeEEeeEEEcCCCeEEEEECCEECCCCCcEEEeCCCEEEECcCCHHHCEEEEEEEEccccceEeeEEEEE
Confidence 468999999999999999999887543 3458999999999999999999998665555444443
No 79
>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=99.42 E-value=2.2e-12 Score=82.34 Aligned_cols=72 Identities=24% Similarity=0.402 Sum_probs=59.6
Q ss_pred eEEEecCCCEEEEeEeCC-----CCCceEEEEECCccCCCC---------CCCeEEeccCCCCCCeEEEEEEEcCCCCce
Q psy3045 143 VQTIDFGRPAQFTCKYEG-----NPVKTISWMKDGKPVPDH---------NEPVFRIDSVRKEDKGMYQCVIRNEQESAQ 208 (267)
Q Consensus 143 ~~~~~~g~~v~l~C~~~~-----~p~~~~~W~~~~~~~~~~---------~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~ 208 (267)
+..+.+|+.+.|.|.+.+ .|.+.+.|+|++..+... ....|.|..+..+|+|.|.|.+.|..+..+
T Consensus 8 ~~~v~~G~~~~L~C~~~g~~~~~~p~~~v~Wyk~~~~~~~~~~~~~r~~~~~~~L~I~~~~~~DsG~Y~C~~~N~~g~~~ 87 (94)
T cd05756 8 KSYVLEGEPVVIKCPLFYSYIAQSPGLNLTWYKSDGKTPIPTEERSRMHQQKDLLWFLPAALEDSGLYTCVVRNSTYCMK 87 (94)
T ss_pred EEEEecCCCeEEECCCCCcccccCCCceEEEEEcCCCCcccccccceeeecCCeEEEccCCcccCeEEEEEEcCCCccEE
Confidence 346778999999999988 688899999998764311 246799999999999999999999998887
Q ss_pred EEEEEE
Q psy3045 209 ASGELK 214 (267)
Q Consensus 209 ~~~~l~ 214 (267)
..+.|.
T Consensus 88 ~~~~L~ 93 (94)
T cd05756 88 VSISLT 93 (94)
T ss_pred EEEEEE
Confidence 776664
No 80
>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.
Probab=99.42 E-value=1.1e-12 Score=79.71 Aligned_cols=64 Identities=33% Similarity=0.595 Sum_probs=54.3
Q ss_pred EEEEeEeCCCCCceEEEEECCccCCCC------CCCeEEeccCCCCCCeEEEEEEEcCCCCceEEEEEEE
Q psy3045 152 AQFTCKYEGNPVKTISWMKDGKPVPDH------NEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKL 215 (267)
Q Consensus 152 v~l~C~~~~~p~~~~~W~~~~~~~~~~------~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v 215 (267)
+.|.|.+.|.|.|.+.|++++..+... ....|.|.++..+|+|.|+|.|.|..|....++.+.|
T Consensus 1 v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 70 (71)
T cd05731 1 LLLECIAEGLPTPEISWIKIGGELPADRTKFENFNKTLKIDNVSEEDDGEYRCTASNSLGSARHTISVTV 70 (71)
T ss_pred CEEEEEeeEecCCeEEEEECCeECCCCceeEecCCCEEEECCCCHHHCEEEEEEEEeCCceEEEEEEEEE
Confidence 478999999999999999998766432 3468999999999999999999999998777776655
No 81
>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.
Probab=99.42 E-value=1.9e-12 Score=80.36 Aligned_cols=68 Identities=16% Similarity=0.378 Sum_probs=57.8
Q ss_pred CCEEEEeEeCCC--CCceEEEEECCccCCCC-------------CCCeEEeccCCCCCCeEEEEEEEcCCCCceEEEEEE
Q psy3045 150 RPAQFTCKYEGN--PVKTISWMKDGKPVPDH-------------NEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELK 214 (267)
Q Consensus 150 ~~v~l~C~~~~~--p~~~~~W~~~~~~~~~~-------------~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~ 214 (267)
+++.|.|.+.+. +++.+.|++||.++... ..+.|.|.+++.+|+|.|+|.|.|..+....+..|.
T Consensus 1 ~~~~l~C~v~~d~~l~~~~~W~~dg~~i~~~~~~~~~~~~~~~~~~~~L~I~nv~~~dsG~YtC~a~n~~~~~~a~a~L~ 80 (85)
T cd05853 1 ESIVLPCQVSHDHSLDIVFTWSFNGHLIDFQKDGDHFERVGGQDSAGDLMIRSIQLKHAGKYVCMVQTSVDKLSAAADLI 80 (85)
T ss_pred CcEEEEEEeccCCCCCcEEEEEECCEECcccCCCccEEEeccCCCCCcEEEecCCHHHCEEEEEEEEcccCceEEEEEEE
Confidence 468899998764 47899999999988521 235799999999999999999999999999999999
Q ss_pred Eec
Q psy3045 215 LGG 217 (267)
Q Consensus 215 v~~ 217 (267)
|.+
T Consensus 81 V~~ 83 (85)
T cd05853 81 VRG 83 (85)
T ss_pred Eec
Confidence 874
No 82
>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins. Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole
Probab=99.41 E-value=3.9e-12 Score=82.15 Aligned_cols=86 Identities=24% Similarity=0.409 Sum_probs=62.5
Q ss_pred CCcccCCCCceeEEecCCCeEEEEEEecc-----eeeeecccCcceeccccCCceEEE----EeeEEEEeecccCCCeeE
Q psy3045 13 APTFSSVSDIIRFKKPGGESFALLCEAQE-----NMWFKFIEGSSRKVAVPLNDRVKQ----VSGTLIIKEAKVEDSGKY 83 (267)
Q Consensus 13 ~P~~~~~~~~~~~~v~~g~~v~l~C~~~~-----~~W~~~~~~~~~~~~~~~~~~~~~----~~~~l~i~~~~~~d~G~Y 83 (267)
+|.|.. + .+..+.+|+++.|.|.+.+ +.|++++..... .......++.. ....|.|.+++.+|+|.|
T Consensus 2 ~P~i~~-~--~~~~~~~g~~v~l~C~~~g~p~p~v~W~~~~~~~~~-~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y 77 (96)
T cd05732 2 QPKITY-L--ENQTAVELEQITLTCEAEGDPIPEITWRRATRNFSE-GDKSLDGRIVVRGHARVSSLTLKDVQLTDAGRY 77 (96)
T ss_pred Ccccee-c--CceeEecCCcEEEEEEEeEcCCCcEEEEECCcccCC-CCccccceEEEeCCccEEEEEECcCCcCcCEEe
Confidence 577753 3 5788999999999999998 999996421110 00011223222 235899999999999999
Q ss_pred EEEEEcCCCccEEEEEEEE
Q psy3045 84 LCVVNNSVGGESVETVLTV 102 (267)
Q Consensus 84 ~C~~~~~~~~~~~~~~l~V 102 (267)
+|.+.|..|.....+.|.|
T Consensus 78 ~C~a~N~~G~~~~s~~l~v 96 (96)
T cd05732 78 DCEASNRIGGDQQSMYLEV 96 (96)
T ss_pred EEEEEeCCCCcEEEEEEeC
Confidence 9999999999888777754
No 83
>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily. Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.41 E-value=2.7e-12 Score=78.72 Aligned_cols=64 Identities=36% Similarity=0.682 Sum_probs=52.7
Q ss_pred EEEEeEeCCCCCceEEEEECCccC-CC---------CCCCeEEeccCCCCCCeEEEEEEEcCCCCceEEEEEEE
Q psy3045 152 AQFTCKYEGNPVKTISWMKDGKPV-PD---------HNEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKL 215 (267)
Q Consensus 152 v~l~C~~~~~p~~~~~W~~~~~~~-~~---------~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v 215 (267)
+.|.|.+.|.|.|.++|++++... .. .....|.|.++..+|+|.|.|.|.|..|....+..|.|
T Consensus 1 a~l~C~~~G~P~P~v~W~k~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~~~l~V 74 (75)
T cd05763 1 ARLECAATGHPTPQIAWQKDGGTDFPAARERRMHVMPEDDVFFIVDVKIEDTGVYSCTAQNTAGSISANATLTV 74 (75)
T ss_pred CEeEeecccccCCEEEEEeCCCccCCcccccceEEecCCCEEEEeeCCcccCEEEEEEEEcCCCEEEeeEEEEE
Confidence 368999999999999999988632 11 13467999999999999999999999998877777665
No 84
>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=99.40 E-value=2.3e-12 Score=81.98 Aligned_cols=69 Identities=29% Similarity=0.514 Sum_probs=58.5
Q ss_pred CCCEEEEeEeCCCCCceEEEEECCccCC--------C------CCCCeEEeccCCCCCCeEEEEEEEcCCCCceEEEEEE
Q psy3045 149 GRPAQFTCKYEGNPVKTISWMKDGKPVP--------D------HNEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELK 214 (267)
Q Consensus 149 g~~v~l~C~~~~~p~~~~~W~~~~~~~~--------~------~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~ 214 (267)
|+.+.|.|.+.+.|.|.+.|++++..+. . .....|.|.+++.+|+|.|.|.|.|..|.....+.|.
T Consensus 1 G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~~~r~~v~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~ 80 (90)
T cd05726 1 GRTVTFQCEATGNPQPAIFWQKEGSQNLLFSYQPPQSSSRFSVSQTGDLTITNVQRSDVGYYICQTLNVAGSILTKAYLE 80 (90)
T ss_pred CCEEEEEEECCccCCCEEEEEeCCCcceeecccCCCCCCeEEECCCCeEEEeeCChhhCEEEEEEEEcCCCceEEEEEEE
Confidence 6789999999999999999999876431 1 1245799999999999999999999999988888888
Q ss_pred Eec
Q psy3045 215 LGG 217 (267)
Q Consensus 215 v~~ 217 (267)
|..
T Consensus 81 V~~ 83 (90)
T cd05726 81 VTD 83 (90)
T ss_pred Eee
Confidence 864
No 85
>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.
Probab=99.40 E-value=2.3e-12 Score=81.92 Aligned_cols=67 Identities=24% Similarity=0.450 Sum_probs=54.6
Q ss_pred CCCEEEEeEeCCCCCceEEEEECC----ccCCC------------------CCCCeEEeccCCCCCCeEEEEEEEcCCCC
Q psy3045 149 GRPAQFTCKYEGNPVKTISWMKDG----KPVPD------------------HNEPVFRIDSVRKEDKGMYQCVIRNEQES 206 (267)
Q Consensus 149 g~~v~l~C~~~~~p~~~~~W~~~~----~~~~~------------------~~~~~l~i~~~~~~d~g~y~C~~~~~~~~ 206 (267)
|+.+.|.|.+.|.|.|.+.|+|++ ..+.. .....|.|.+++.+|+|.|+|.|.|..|.
T Consensus 1 G~~v~l~C~v~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~ 80 (90)
T cd04974 1 GSDVEFHCKVYSDAQPHIQWLKHVEVNGSKYGPDGLPYVTVLKVAGINTTDNESEVLYLRNVSFDDAGEYTCLAGNSIGP 80 (90)
T ss_pred CCcEEEEEEEeCCCCCeEEEEEecccCCceeCCCCCceEEEEEecCCcccccccceEEEeccccccCcEEEEEeecccCc
Confidence 678999999999999999999953 22110 12247899999999999999999999999
Q ss_pred ceEEEEEEE
Q psy3045 207 AQASGELKL 215 (267)
Q Consensus 207 ~~~~~~l~v 215 (267)
...++.|.|
T Consensus 81 ~~~sa~L~V 89 (90)
T cd04974 81 SHHSAWLTV 89 (90)
T ss_pred ccCCEEEEe
Confidence 888887765
No 86
>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=99.40 E-value=1.9e-12 Score=79.47 Aligned_cols=62 Identities=26% Similarity=0.549 Sum_probs=52.5
Q ss_pred CCceEEEecCCCEEEEeEeCCCCC-ceEEEEECCccCCCCCCCeEEeccCCCCCCeEEEEEEEcC
Q psy3045 140 EPTVQTIDFGRPAQFTCKYEGNPV-KTISWMKDGKPVPDHNEPVFRIDSVRKEDKGMYQCVIRNE 203 (267)
Q Consensus 140 ~~~~~~~~~g~~v~l~C~~~~~p~-~~~~W~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~ 203 (267)
.|....+.+|++++|.|.+.+.|. ..+.|++|+..+. .....|.|.++ .+|+|.|+|.|.+.
T Consensus 6 ~P~~~~v~~G~~V~L~C~~~~~p~~~~~~W~kng~~l~-~~~~~l~i~~~-~~dsG~Y~C~a~~~ 68 (78)
T cd05752 6 DPPWTTIFQGEKVTLTCNGFNSPEQNSTQWYHNGKLLE-TTTNSYRIRAA-NNDSGEYRCQTQGS 68 (78)
T ss_pred CCCCeEeeCCCCEEEEEeCCCCCCCccEEEEECCEEee-ccCCeEEEeec-ccCCEEeEEECCCC
Confidence 345558899999999999998874 5799999999873 34678999999 99999999999875
No 87
>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=99.40 E-value=4.4e-12 Score=81.60 Aligned_cols=68 Identities=35% Similarity=0.568 Sum_probs=54.5
Q ss_pred CceEEEecCCCEEEEeEeCCCCCceEEEEECCccCCCCC--------CCeEEeccC-----CCCCCeEEEEEEEcC-CCC
Q psy3045 141 PTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHN--------EPVFRIDSV-----RKEDKGMYQCVIRNE-QES 206 (267)
Q Consensus 141 ~~~~~~~~g~~v~l~C~~~~~p~~~~~W~~~~~~~~~~~--------~~~l~i~~~-----~~~d~g~y~C~~~~~-~~~ 206 (267)
|....+.+|+++.|.|.+.+.|.+.+.|+|+|..+.... ...+.+..+ ..+|.|.|+|.|.|. .|.
T Consensus 6 P~~~~~~~g~~v~l~C~v~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~l~i~~v~~~~~~~~D~G~Y~C~a~N~~~G~ 85 (95)
T cd05722 6 PSDIVAVRGGPVVLNCSAEGEPPPKIEWKKDGVLLNLVSDERRQQLPNGSLLITSVVHSKHNKPDEGFYQCVAQNDSLGS 85 (95)
T ss_pred CCCeEEcCCCCEEEeeecccCCCCEEEEEECCeECccccCcceEEccCCeEEEeeeeccCCCCCcCEEEEEEEECCccCc
Confidence 444577789999999999999999999999998876432 244666554 578999999999999 877
Q ss_pred ce
Q psy3045 207 AQ 208 (267)
Q Consensus 207 ~~ 208 (267)
..
T Consensus 86 ~~ 87 (95)
T cd05722 86 IV 87 (95)
T ss_pred EE
Confidence 63
No 88
>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins. Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes
Probab=99.40 E-value=3.6e-12 Score=82.27 Aligned_cols=77 Identities=21% Similarity=0.215 Sum_probs=59.3
Q ss_pred eeEEecCCCeEEEEEEecc------eeeeecccCcceeccccCCceEE-------EEeeEEEEeecccCCCeeEEEEEEc
Q psy3045 23 IRFKKPGGESFALLCEAQE------NMWFKFIEGSSRKVAVPLNDRVK-------QVSGTLIIKEAKVEDSGKYLCVVNN 89 (267)
Q Consensus 23 ~~~~v~~g~~v~l~C~~~~------~~W~~~~~~~~~~~~~~~~~~~~-------~~~~~l~i~~~~~~d~G~Y~C~~~~ 89 (267)
..+.+.+|+++.|.|.+.+ +.|+||+.... .. ....+. ...+.|.|.++..+|+|.|+|.|.|
T Consensus 11 ~~~~v~~G~~v~L~c~v~g~~P~p~v~W~Kdg~~i~--~~--~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Ytc~A~N 86 (101)
T cd04975 11 TTIFVNLGENLNLVVEVEAYPPPPHINWTYDNRTLT--NK--LTEIVTSENESEYRYVSELKLVRLKESEAGTYTFLASN 86 (101)
T ss_pred ceEEEECCCCEEEEEEEEecCCCCccEEEeCCeeCC--CC--cceeEEEeccCcceEEEEEEEeecCHhhCeeEEEEEEC
Confidence 5789999999999999997 99999743221 11 011111 1246899999999999999999999
Q ss_pred CCCccEEEEEEEEE
Q psy3045 90 SVGGESVETVLTVT 103 (267)
Q Consensus 90 ~~~~~~~~~~l~V~ 103 (267)
..|..+..+.|.|.
T Consensus 87 ~~G~~~~t~~L~V~ 100 (101)
T cd04975 87 SDASKSLTFELYVN 100 (101)
T ss_pred CCccEEEEEEEEEE
Confidence 99998888888775
No 89
>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2). Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.
Probab=99.39 E-value=2.4e-12 Score=81.89 Aligned_cols=67 Identities=27% Similarity=0.484 Sum_probs=54.6
Q ss_pred CCCEEEEeEeCCCCCceEEEEEC----CccCCCC------------------CCCeEEeccCCCCCCeEEEEEEEcCCCC
Q psy3045 149 GRPAQFTCKYEGNPVKTISWMKD----GKPVPDH------------------NEPVFRIDSVRKEDKGMYQCVIRNEQES 206 (267)
Q Consensus 149 g~~v~l~C~~~~~p~~~~~W~~~----~~~~~~~------------------~~~~l~i~~~~~~d~g~y~C~~~~~~~~ 206 (267)
|+.+.|.|.+.|.|.|.+.|+++ +..+... ....|.|.+++.+|+|.|+|.|.|..|.
T Consensus 1 G~~v~L~C~~~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~ 80 (90)
T cd05858 1 GSTVEFVCKVYSDAQPHIQWLKHVEKNGSKYGPDGLPYVTVLKTAGVNTTDKEMEVLYLRNVTFEDAGEYTCLAGNSIGI 80 (90)
T ss_pred CCeEEEEEEEecCCCCEEEEEEecccCCcEeCCCCCeeEEEeccCCceecCCceeEEEEccCCHHHCEEEEEEEEeCCCc
Confidence 67899999999999999999984 3322110 1147999999999999999999999999
Q ss_pred ceEEEEEEE
Q psy3045 207 AQASGELKL 215 (267)
Q Consensus 207 ~~~~~~l~v 215 (267)
...++.|.|
T Consensus 81 ~~~~a~L~V 89 (90)
T cd05858 81 SHHSAWLTV 89 (90)
T ss_pred ccceEEEEE
Confidence 888877765
No 90
>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily. Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.39 E-value=2.9e-12 Score=78.42 Aligned_cols=66 Identities=30% Similarity=0.610 Sum_probs=54.5
Q ss_pred CCCEEEEeEeCCCCCceEEEEE-CCccCCCC------CCCeEEeccCCCCCCeEEEEEEEcCCCCceEEEEEE
Q psy3045 149 GRPAQFTCKYEGNPVKTISWMK-DGKPVPDH------NEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELK 214 (267)
Q Consensus 149 g~~v~l~C~~~~~p~~~~~W~~-~~~~~~~~------~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~ 214 (267)
|+.+.|.|.+.|.|.|.+.|++ ++..+... ....|.|..+..+|.|.|+|.|.|..|..+.+..|.
T Consensus 1 G~~~~l~C~~~g~P~p~v~W~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~ 73 (74)
T cd05764 1 GQRATLRCKARGDPEPAIHWISPDGKLISNSSRTLVYDNGTLDILITTVKDTGSFTCIASNAAGEATATVELH 73 (74)
T ss_pred CCeEEEEEEccCcCCCEEEEEeCCCEEecCCCeEEEecCCEEEEEECChhhCEEEEEEEECCCCeEEEEEEEE
Confidence 6789999999999999999997 55554332 346799999999999999999999999877666654
No 91
>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=99.39 E-value=6.8e-12 Score=79.22 Aligned_cols=73 Identities=32% Similarity=0.314 Sum_probs=56.7
Q ss_pred CCeEEEEEEecc-----eeeeecccCcceeccccCCceEEE--------EeeEEEEeecccCCCeeEEEEEEcCCCccEE
Q psy3045 30 GESFALLCEAQE-----NMWFKFIEGSSRKVAVPLNDRVKQ--------VSGTLIIKEAKVEDSGKYLCVVNNSVGGESV 96 (267)
Q Consensus 30 g~~v~l~C~~~~-----~~W~~~~~~~~~~~~~~~~~~~~~--------~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~ 96 (267)
|+.+.|.|.+.+ +.|++++.... ....++.. ..++|.|.++...|+|.|+|.|.|..|....
T Consensus 1 g~~~~l~C~~~g~p~~~i~W~k~~~~i~-----~~~~r~~~~~~~~~~~~~s~L~I~~~~~~D~G~YtC~A~N~~G~~~~ 75 (88)
T cd05735 1 GQKKEMSCTAHGEKPIIVRWEKEDRIIN-----PEMSRYLVSTKEVGDEVISTLQILPTVREDSGFFSCHAINSYGEDRG 75 (88)
T ss_pred CCeEEEEEEEECCCCCEEEEeeCCEECC-----CCCCcEEEEEecCCCcEEEEEEECCCCcccCEEEEEEEEcCCCcceE
Confidence 789999999999 99999642110 11122221 2367999999999999999999999999999
Q ss_pred EEEEEEEeccc
Q psy3045 97 ETVLTVTAPLA 107 (267)
Q Consensus 97 ~~~l~V~~~~~ 107 (267)
.+.|.|..+|.
T Consensus 76 ~~~L~V~~~P~ 86 (88)
T cd05735 76 IIQLTVQEPPD 86 (88)
T ss_pred EEEEEEeCCCC
Confidence 99999987654
No 92
>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=99.39 E-value=4.6e-12 Score=79.42 Aligned_cols=73 Identities=25% Similarity=0.393 Sum_probs=54.5
Q ss_pred CeEEEEEEecc-------eeeeecccCcceeccccCCce---EE--EEeeEEEEeecccCCCeeEEEEEEcCCCccEEEE
Q psy3045 31 ESFALLCEAQE-------NMWFKFIEGSSRKVAVPLNDR---VK--QVSGTLIIKEAKVEDSGKYLCVVNNSVGGESVET 98 (267)
Q Consensus 31 ~~v~l~C~~~~-------~~W~~~~~~~~~~~~~~~~~~---~~--~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~ 98 (267)
++++|.|.+.+ +.|++++....... ...+ +. ...++|.|.+++..|+|.|+|.|.|..|..+..+
T Consensus 1 ~~~~L~C~a~g~P~p~~~v~W~~~g~~i~~~~---~~~~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~A~n~~g~~~~~~ 77 (85)
T cd05854 1 ENLTLQCHASHDPTMDLTFTWSLDDFPIDLDK---PNGHYRRMEVKETIGDLVIVNAQLSHAGTYTCTAQTVVDSASASA 77 (85)
T ss_pred CcEEEEEEEecCCCCCeEEEEEECCeEccccC---CCCcEEEEEecceEeEEEEccCChhhCeEEEEEEecCCCCEEEEE
Confidence 57899999998 79999632211100 1111 11 2456899999999999999999999999999999
Q ss_pred EEEEEecc
Q psy3045 99 VLTVTAPL 106 (267)
Q Consensus 99 ~l~V~~~~ 106 (267)
.|.|.++|
T Consensus 78 ~L~V~~~P 85 (85)
T cd05854 78 TLVVRGPP 85 (85)
T ss_pred EEEEECCC
Confidence 99998643
No 93
>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.
Probab=99.39 E-value=2.8e-12 Score=81.93 Aligned_cols=74 Identities=32% Similarity=0.452 Sum_probs=57.1
Q ss_pred eeEEecCCCeEEEEEEecc-----eeeeecccCcceeccccCCceEE--E---EeeEEEEeecccCCCeeEEEEEEcCCC
Q psy3045 23 IRFKKPGGESFALLCEAQE-----NMWFKFIEGSSRKVAVPLNDRVK--Q---VSGTLIIKEAKVEDSGKYLCVVNNSVG 92 (267)
Q Consensus 23 ~~~~v~~g~~v~l~C~~~~-----~~W~~~~~~~~~~~~~~~~~~~~--~---~~~~l~i~~~~~~d~G~Y~C~~~~~~~ 92 (267)
+.+.+.+|+++.|.|.+.+ +.|++++... ....++. . ...+|.|.+++.+|+|.|+|.+.|..|
T Consensus 9 ~~v~v~~G~~v~L~C~v~G~P~p~v~W~k~g~~l------~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G 82 (92)
T cd05737 9 DVVTIMEGKTLNLTCTVFGDPDPEVSWLKNDQAL------ALSDHYNVKVEQGKYASLTIKGVSSEDSGKYGIVVKNKYG 82 (92)
T ss_pred ceEEEeCCCcEEEEEEEEecCCCeEEEEECCEEC------ccCCCEEEEEcCCCEEEEEEccCChhhCEEEEEEEEECCC
Confidence 5789999999999999988 9999963221 1122221 1 134799999999999999999999999
Q ss_pred ccEEEEEEEE
Q psy3045 93 GESVETVLTV 102 (267)
Q Consensus 93 ~~~~~~~l~V 102 (267)
.....+.|.|
T Consensus 83 ~~~~~~~v~v 92 (92)
T cd05737 83 GETVDVTVSV 92 (92)
T ss_pred cceEEEEEeC
Confidence 8877776654
No 94
>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin. Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.
Probab=99.38 E-value=3e-12 Score=78.22 Aligned_cols=68 Identities=35% Similarity=0.501 Sum_probs=53.3
Q ss_pred CCCeEEEEEEecc-----eeeeecccCcceeccccCCceE-EEEeeEEEEeecccCCCeeEEEEEEcCCCccEEEEEEEE
Q psy3045 29 GGESFALLCEAQE-----NMWFKFIEGSSRKVAVPLNDRV-KQVSGTLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTV 102 (267)
Q Consensus 29 ~g~~v~l~C~~~~-----~~W~~~~~~~~~~~~~~~~~~~-~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~V 102 (267)
+|+++.|.|.+.+ +.|++++... ....+. ...+++|.|.+++.+|+|.|+|.+.|..|..+..+.|.|
T Consensus 1 eG~~v~l~C~~~g~P~p~i~W~k~g~~~------~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~L~V 74 (74)
T cd05745 1 EGQTVDFLCEAQGYPQPVIAWTKGGSQL------SVDRRHLVLSSGTLRISRVALHDQGQYECQAVNIVGSQRTVAQLTV 74 (74)
T ss_pred CCCeEEEEeECCEecCCEEEEEECCEEC------CCCCCeEEccCCeEEEeeCCHHhCEEEEEEEEeCCCceeEEEEEeC
Confidence 6999999999998 9999963311 112222 234568999999999999999999999999888777764
No 95
>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2. Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=99.38 E-value=3.8e-12 Score=80.66 Aligned_cols=72 Identities=25% Similarity=0.495 Sum_probs=56.3
Q ss_pred CceEEEecCCCEEEEeEeCCCCCceEEEEE-CCccCCCC---------CCCeEEeccCCCCCCeEEEEEEEcCCCCce-E
Q psy3045 141 PTVQTIDFGRPAQFTCKYEGNPVKTISWMK-DGKPVPDH---------NEPVFRIDSVRKEDKGMYQCVIRNEQESAQ-A 209 (267)
Q Consensus 141 ~~~~~~~~g~~v~l~C~~~~~p~~~~~W~~-~~~~~~~~---------~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~-~ 209 (267)
+.+..+..|+.+.|.|.+.|.|. .+.|++ ++..+..+ ....|.|..+..+|+|.|+|.|.|..|... .
T Consensus 7 ~~~~~v~~G~~v~l~C~~~G~P~-~v~W~k~~g~~~~~~~r~~~~~~g~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~ 85 (92)
T cd05866 7 LSKVELSVGESKFFTCTAIGEPE-SIDWYNPQGEKIVSSQRVVVQKEGVRSRLTIYNANIEDAGIYRCQATDAKGQTQEA 85 (92)
T ss_pred ecceEEcCCCeEEEEEEEEEeCC-eEEEEeCCCeEecCCCCEEEEeCCCeeEEEEecCChHHCEEEEEEEEcCCCcEEEE
Confidence 34457889999999999999987 899998 45554322 124799999999999999999999988754 3
Q ss_pred EEEE
Q psy3045 210 SGEL 213 (267)
Q Consensus 210 ~~~l 213 (267)
+..|
T Consensus 86 ~i~l 89 (92)
T cd05866 86 TVVL 89 (92)
T ss_pred EEEE
Confidence 4444
No 96
>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5. Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.
Probab=99.38 E-value=6.2e-12 Score=80.48 Aligned_cols=62 Identities=26% Similarity=0.512 Sum_probs=51.7
Q ss_pred cCCCEEEEeEeCCCCCceEEEEECCccCCCC-------CCCeEEeccCC-CCCCeEEEEEEEcCCCCceE
Q psy3045 148 FGRPAQFTCKYEGNPVKTISWMKDGKPVPDH-------NEPVFRIDSVR-KEDKGMYQCVIRNEQESAQA 209 (267)
Q Consensus 148 ~g~~v~l~C~~~~~p~~~~~W~~~~~~~~~~-------~~~~l~i~~~~-~~d~g~y~C~~~~~~~~~~~ 209 (267)
.|+.+.|.|.+.|.|.|.++|++++..+... ....|.|.++. .+|.|.|+|.|.|..|...+
T Consensus 18 ~g~~v~l~C~~~G~P~P~i~W~k~g~~l~~~~~~~~~~~~g~L~i~~~~~~~D~G~Y~C~A~N~~G~~~S 87 (94)
T cd05848 18 DEKKVILNCEARGNPVPTYRWLRNGTEIDTESDYRYSLIDGNLIISNPSEVKDSGRYQCLATNSIGSILS 87 (94)
T ss_pred CCCEEEEEEEeeecCCCEEEEEECCeECccCCCceEEeeCCeEEEccCCccCcCEEEEEEEEcCCCeEEe
Confidence 4788999999999999999999999888532 23567788774 68999999999999987643
No 97
>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins. Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=99.37 E-value=1e-11 Score=80.32 Aligned_cols=72 Identities=19% Similarity=0.293 Sum_probs=58.5
Q ss_pred ceEEEecCCCEEEEeEeCCCCCc-eEEEEECCccCCCCC---------------CCeEEeccCCCCC-CeEEEEEEEcCC
Q psy3045 142 TVQTIDFGRPAQFTCKYEGNPVK-TISWMKDGKPVPDHN---------------EPVFRIDSVRKED-KGMYQCVIRNEQ 204 (267)
Q Consensus 142 ~~~~~~~g~~v~l~C~~~~~p~~-~~~W~~~~~~~~~~~---------------~~~l~i~~~~~~d-~g~y~C~~~~~~ 204 (267)
....+.+|+.+.|.|.+.|.|.| .+.|++++..+.... .+.|.|.++..+| .|.|.|.|.|..
T Consensus 9 ~~~~~~~G~~v~L~C~~~g~P~P~~v~W~~~~~~i~~~~~~r~~i~~~~~~~~~~s~L~I~~v~~~d~~G~Y~C~A~N~~ 88 (98)
T cd05758 9 ATQYAILGDKGRVECFIFSTPPPDRIVWTWKENELESGSSGRYTVETDPSPGGVLSTLTISNTQESDFQTSYNCTAWNSF 88 (98)
T ss_pred CcEEEeCCCcEEEEEEEcccCCCCEeEEEECCEEccCCCCCCEEEEEecCCCceEEEEEECCccccccceeEEEEEEcCC
Confidence 34467889999999999999988 699999998765321 1378999999844 899999999999
Q ss_pred CCceEEEEE
Q psy3045 205 ESAQASGEL 213 (267)
Q Consensus 205 ~~~~~~~~l 213 (267)
|.....+.|
T Consensus 89 G~~~~~~~L 97 (98)
T cd05758 89 GSGTAIISL 97 (98)
T ss_pred CcccEEEEe
Confidence 987776654
No 98
>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.37 E-value=3.9e-12 Score=77.17 Aligned_cols=67 Identities=28% Similarity=0.423 Sum_probs=53.6
Q ss_pred CCeEEEEEEecc-----eeeeecccCcceeccccCCceEEE-EeeEEEEeecccCCCeeEEEEEEcCCCccEEEEEEEE
Q psy3045 30 GESFALLCEAQE-----NMWFKFIEGSSRKVAVPLNDRVKQ-VSGTLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTV 102 (267)
Q Consensus 30 g~~v~l~C~~~~-----~~W~~~~~~~~~~~~~~~~~~~~~-~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~V 102 (267)
|+++.|.|.+.+ +.|++++.. +....++.. .+++|.|.+++.+|+|.|+|.|.|..|.......|.|
T Consensus 1 G~~~~l~C~~~g~P~p~v~W~k~~~~------l~~~~r~~~~~~g~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~~ 73 (73)
T cd05852 1 GGRVIIECKPKAAPKPKFSWSKGTEL------LVNNSRISIWDDGSLEILNITKLDEGSYTCFAENNRGKANSTGVLSV 73 (73)
T ss_pred CCeEEEEEecceeCCCEEEEEeCCEe------cccCCCEEEcCCCEEEECcCChhHCEEEEEEEECCCCceeEEEEEEC
Confidence 789999999999 999996321 122344443 4578999999999999999999999999888877764
No 99
>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2. Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=99.37 E-value=4.1e-12 Score=80.54 Aligned_cols=75 Identities=25% Similarity=0.395 Sum_probs=55.8
Q ss_pred eeEEecCCCeEEEEEEecc----eeeeecccCcceeccccCCceEEEE----eeEEEEeecccCCCeeEEEEEEcCCCcc
Q psy3045 23 IRFKKPGGESFALLCEAQE----NMWFKFIEGSSRKVAVPLNDRVKQV----SGTLIIKEAKVEDSGKYLCVVNNSVGGE 94 (267)
Q Consensus 23 ~~~~v~~g~~v~l~C~~~~----~~W~~~~~~~~~~~~~~~~~~~~~~----~~~l~i~~~~~~d~G~Y~C~~~~~~~~~ 94 (267)
.+..+.+|+++.|.|.+.| +.|+++++ .. +....++... .+.|.|.++..+|+|.|+|.|.|..|..
T Consensus 8 ~~~~v~~G~~v~l~C~~~G~P~~v~W~k~~g-~~----~~~~~r~~~~~~g~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~ 82 (92)
T cd05866 8 SKVELSVGESKFFTCTAIGEPESIDWYNPQG-EK----IVSSQRVVVQKEGVRSRLTIYNANIEDAGIYRCQATDAKGQT 82 (92)
T ss_pred cceEEcCCCeEEEEEEEEEeCCeEEEEeCCC-eE----ecCCCCEEEEeCCCeeEEEEecCChHHCEEEEEEEEcCCCcE
Confidence 6788999999999999998 99998422 11 1112334332 2389999999999999999999999874
Q ss_pred -EEEEEEEE
Q psy3045 95 -SVETVLTV 102 (267)
Q Consensus 95 -~~~~~l~V 102 (267)
...+.|.+
T Consensus 83 ~~~~i~l~~ 91 (92)
T cd05866 83 QEATVVLEI 91 (92)
T ss_pred EEEEEEEEE
Confidence 55555544
No 100
>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2. Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=99.36 E-value=1.3e-11 Score=79.04 Aligned_cols=61 Identities=20% Similarity=0.396 Sum_probs=50.4
Q ss_pred CCCEEEEeEeCCCCCceEEEEECCccCCCCC-------CCeEEeccCC-CCCCeEEEEEEEcCCCCceE
Q psy3045 149 GRPAQFTCKYEGNPVKTISWMKDGKPVPDHN-------EPVFRIDSVR-KEDKGMYQCVIRNEQESAQA 209 (267)
Q Consensus 149 g~~v~l~C~~~~~p~~~~~W~~~~~~~~~~~-------~~~l~i~~~~-~~d~g~y~C~~~~~~~~~~~ 209 (267)
|+.+.|.|.+.|.|.+.++|+++|..+.... ...|.|.++. .+|.|.|+|.|.|..|...+
T Consensus 19 g~~v~l~C~a~g~P~p~i~W~~~g~~l~~~~~~~~~~~~g~L~I~~~~~~~D~G~Y~C~A~N~~G~~~s 87 (94)
T cd05850 19 EEKVTLGCRARASPPATYRWKMNGTEIKFAPESRYTLVAGNLVINNPQKARDAGSYQCLAINRCGTVVS 87 (94)
T ss_pred CCeEEEEeEceeCCCCEEEEEECCEECccCCCceEEEECCeEEEccCCccCcCEEEEEEEEcCcCcEEE
Confidence 4679999999999999999999998875322 3567787654 68999999999999987654
No 101
>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins. Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s
Probab=99.36 E-value=5.6e-12 Score=80.40 Aligned_cols=73 Identities=29% Similarity=0.610 Sum_probs=55.7
Q ss_pred CceEEEecCCCEEEEeEeCCCCCceEEEEE-CCccCCCC----------CCCeEEeccCCCCCCeEEEEEEEcCCCC-ce
Q psy3045 141 PTVQTIDFGRPAQFTCKYEGNPVKTISWMK-DGKPVPDH----------NEPVFRIDSVRKEDKGMYQCVIRNEQES-AQ 208 (267)
Q Consensus 141 ~~~~~~~~g~~v~l~C~~~~~p~~~~~W~~-~~~~~~~~----------~~~~l~i~~~~~~d~g~y~C~~~~~~~~-~~ 208 (267)
+....+..|+.+.|.|.+.|.|. .+.|++ ++..+... ..+.|.|.++..+|+|.|+|.|.|..|. ..
T Consensus 7 p~~~~v~~G~~~~l~C~~~G~p~-~i~W~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~g~~~~ 85 (92)
T cd04977 7 PSQGEISVGESKFFLCQVIGEPK-DISWFSPNGEKLVTQQQISVVQNDDVRSTLTIYNANIEDAGIYKCVATDAKGTESE 85 (92)
T ss_pred cCcEEECCCCeEEEEEEeEeeCC-eEEEECCCCCEeccCCCEEEEeCCCCEEEEEEecCCcccCEEEEEEEEcCCCCcce
Confidence 34457889999999999999874 999997 55544321 2257999999999999999999998643 44
Q ss_pred EEEEEE
Q psy3045 209 ASGELK 214 (267)
Q Consensus 209 ~~~~l~ 214 (267)
.+..|.
T Consensus 86 ~sv~l~ 91 (92)
T cd04977 86 ATVNLK 91 (92)
T ss_pred eEEEEE
Confidence 455443
No 102
>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans
Probab=99.36 E-value=3.9e-12 Score=81.45 Aligned_cols=76 Identities=29% Similarity=0.438 Sum_probs=56.0
Q ss_pred eeEEecCCCeEEEEEEecc------eeeeecccCcceeccccCCceEEE-----EeeEEEEeecccCCCeeEEEEEEcCC
Q psy3045 23 IRFKKPGGESFALLCEAQE------NMWFKFIEGSSRKVAVPLNDRVKQ-----VSGTLIIKEAKVEDSGKYLCVVNNSV 91 (267)
Q Consensus 23 ~~~~v~~g~~v~l~C~~~~------~~W~~~~~~~~~~~~~~~~~~~~~-----~~~~l~i~~~~~~d~G~Y~C~~~~~~ 91 (267)
....+.+|+++.|.|.+.+ +.|++.++.... ....++.. ..++|.|.++..+|+|.|+|.|.|..
T Consensus 8 ~~~~v~~G~~v~l~C~v~G~P~~p~i~W~~~~g~~l~----~~~~r~~v~~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~ 83 (96)
T cd05865 8 SQGEISVGESKFFLCQVAGEAKDKDISWFSPNGEKLT----PNQQRISVVRNDDYSSTLTIYNANIDDAGIYKCVVSNED 83 (96)
T ss_pred CccEECCCCeEEEEEEEeCCCCCCEEEEECCCCcCcc----ccCCeEEEEeCCCCceEEEEeccChhhCEEEEEEEEcCC
Confidence 5668999999999999987 999983221111 11223221 12589999999999999999999997
Q ss_pred -CccEEEEEEEE
Q psy3045 92 -GGESVETVLTV 102 (267)
Q Consensus 92 -~~~~~~~~l~V 102 (267)
|.....+.|.|
T Consensus 84 ~g~~~~s~~l~v 95 (96)
T cd05865 84 EGESEATVNVKI 95 (96)
T ss_pred CCcEEEEEEEEE
Confidence 66777777765
No 103
>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=99.36 E-value=2.5e-12 Score=78.96 Aligned_cols=71 Identities=23% Similarity=0.274 Sum_probs=52.2
Q ss_pred CcccCCCCceeEEecCCCeEEEEEEecc------eeeeecccCcceeccccCCceEEEEeeEEEEeecccCCCeeEEEEE
Q psy3045 14 PTFSSVSDIIRFKKPGGESFALLCEAQE------NMWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYLCVV 87 (267)
Q Consensus 14 P~~~~~~~~~~~~v~~g~~v~l~C~~~~------~~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~ 87 (267)
|.+...| +...+.+|++|+|.|.+.+ +.|++++... ...+..|.|.++ .+|+|.|+|.+
T Consensus 1 ~vv~~~P--~~~~v~~G~~V~L~C~~~~~p~~~~~~W~kng~~l------------~~~~~~l~i~~~-~~dsG~Y~C~a 65 (78)
T cd05752 1 AVVSLDP--PWTTIFQGEKVTLTCNGFNSPEQNSTQWYHNGKLL------------ETTTNSYRIRAA-NNDSGEYRCQT 65 (78)
T ss_pred CeEEeCC--CCeEeeCCCCEEEEEeCCCCCCCccEEEEECCEEe------------eccCCeEEEeec-ccCCEEeEEEC
Confidence 4556666 6789999999999999775 9999963211 123457999999 99999999999
Q ss_pred EcCCCccEEEEEEE
Q psy3045 88 NNSVGGESVETVLT 101 (267)
Q Consensus 88 ~~~~~~~~~~~~l~ 101 (267)
.+. ..+..+.|.
T Consensus 66 ~~~--~~S~~v~l~ 77 (78)
T cd05752 66 QGS--SLSDPVHLE 77 (78)
T ss_pred CCC--cCCCCEEEe
Confidence 875 334444443
No 104
>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo
Probab=99.35 E-value=9.4e-12 Score=79.17 Aligned_cols=78 Identities=17% Similarity=0.094 Sum_probs=57.4
Q ss_pred eeEEecCCCeEEEEEEecc-----eeeeecccCcceeccccCCceEEEEeeEEEEeecccCCCeeEEEEEEcCCCccEEE
Q psy3045 23 IRFKKPGGESFALLCEAQE-----NMWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYLCVVNNSVGGESVE 97 (267)
Q Consensus 23 ~~~~v~~g~~v~l~C~~~~-----~~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~ 97 (267)
.+..+.+|+.+.|.|.+.+ +.|++++.... ..-............|.|.++..+|.|.|+|.|.|..|.....
T Consensus 8 ~~~~v~~G~~v~l~C~~~G~P~p~v~W~~~g~~~~--~~~~~~~~~~~~~~~L~I~~v~~~D~g~Y~C~A~N~~G~~~~~ 85 (90)
T cd04972 8 NATVVYEGGTATIRCTAEGSPLPKVEWIIAGLIVI--QTRTDTLETTVDIYNLQLSNITSETQTTVTCTAENPVGQANVS 85 (90)
T ss_pred cCEEEcCCCcEEEEEEEEEcCCCeEEEEECCEEcc--CCccEEEEecCCEEEEEEecCCcccCEEEEEEEECCCCceeEE
Confidence 4566999999999999999 99999643211 0000000111234589999999999999999999999998887
Q ss_pred EEEEE
Q psy3045 98 TVLTV 102 (267)
Q Consensus 98 ~~l~V 102 (267)
+.|.|
T Consensus 86 ~~L~v 90 (90)
T cd04972 86 VQVTV 90 (90)
T ss_pred EEEeC
Confidence 77754
No 105
>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily. Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.35 E-value=5.6e-12 Score=78.67 Aligned_cols=67 Identities=28% Similarity=0.503 Sum_probs=53.7
Q ss_pred CCCEEEEeEeCCCCCceEEEEECCc---cC--CC---------CCCCeEEeccCCCCCCeEEEEEEEcCCCCceEEEEEE
Q psy3045 149 GRPAQFTCKYEGNPVKTISWMKDGK---PV--PD---------HNEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELK 214 (267)
Q Consensus 149 g~~v~l~C~~~~~p~~~~~W~~~~~---~~--~~---------~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~ 214 (267)
|+.+.|.|.+.|.|.|.+.|++++. .+ .. .....|.|.++..+|+|.|.|.|.|..|.....+.|.
T Consensus 1 G~~v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~ 80 (81)
T cd05765 1 GETASFHCDVTGRPPPEITWEKQVHGKENLIMRPNHVRGNVVVTNIGQLVIYNAQPQDAGLYTCTARNSGGLLRANFPLS 80 (81)
T ss_pred CCcEEEEeeccccCCCcEEEEecCCCCcceeecCCcccCCEEEccccEEEEccCCcccCEEEEEEEecCCceEEEEEEEe
Confidence 6789999999999999999999732 11 11 1235799999999999999999999999877776664
Q ss_pred E
Q psy3045 215 L 215 (267)
Q Consensus 215 v 215 (267)
|
T Consensus 81 v 81 (81)
T cd05765 81 V 81 (81)
T ss_pred C
Confidence 3
No 106
>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.
Probab=99.35 E-value=6.7e-12 Score=76.63 Aligned_cols=64 Identities=31% Similarity=0.604 Sum_probs=51.9
Q ss_pred EEEEeEeCCCCCceEEEEECCccCCCC--------CCCeEEeccCCCCCCeEEEEEEEcCCCCc-eEEEEEEE
Q psy3045 152 AQFTCKYEGNPVKTISWMKDGKPVPDH--------NEPVFRIDSVRKEDKGMYQCVIRNEQESA-QASGELKL 215 (267)
Q Consensus 152 v~l~C~~~~~p~~~~~W~~~~~~~~~~--------~~~~l~i~~~~~~d~g~y~C~~~~~~~~~-~~~~~l~v 215 (267)
++|.|.+.|.|.|.+.|++++.++... ....|.|.++..+|+|.|+|.|.|..|.. .....|.|
T Consensus 1 a~l~C~~~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~g~L~i~~~~~~D~G~Y~C~a~N~~G~~~s~~a~l~v 73 (74)
T cd05738 1 ATMLCAASGNPDPEITWFKDFLPVDTTSNGRIKQLRSGALQIENSEESDQGKYECVATNSAGTRYSAPANLYV 73 (74)
T ss_pred CEEEEEEeEecCCEEEEEECCEECccCCCCCEEEcCCcEEEECCCChhhCEEEEEEEECCCCceEcccEEEEE
Confidence 368999999999999999998877521 34579999999999999999999999874 33555544
No 107
>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins. Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.
Probab=99.35 E-value=1.1e-11 Score=76.30 Aligned_cols=64 Identities=30% Similarity=0.643 Sum_probs=55.6
Q ss_pred EEEeEeCCCCCceEEEEECCccCCCC---------CCCeEEeccCCCCCCeEEEEEEEcCCCCceEEEEEEEe
Q psy3045 153 QFTCKYEGNPVKTISWMKDGKPVPDH---------NEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLG 216 (267)
Q Consensus 153 ~l~C~~~~~p~~~~~W~~~~~~~~~~---------~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v~ 216 (267)
.|.|.+.|.|.|.+.|++++..+... ....|.|..+..+|.|.|+|.+.|..|....++.|.|.
T Consensus 2 ~L~C~v~g~P~p~v~W~k~~~~l~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~ 74 (76)
T cd05736 2 SLRCHAEGIPLPRLTWLKNGMDITPKLSKQLTLIANGSELHISNVRYEDTGAYTCIAKNEAGVDEDISSLFVE 74 (76)
T ss_pred EeEeEeeecCCCEEEEEECCEECCCCCCccEEEeCCCCEEEECcCCcccCEEEEEEEEcCCCCcceEEEEEEE
Confidence 68999999999999999998876532 23579999999999999999999999999888888774
No 108
>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1. Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.34 E-value=1.1e-11 Score=79.03 Aligned_cols=61 Identities=18% Similarity=0.364 Sum_probs=50.9
Q ss_pred CCCEEEEeEeCCCCCceEEEEECCccCCCC------CCCeEEeccCC-CCCCeEEEEEEEcCCCCceE
Q psy3045 149 GRPAQFTCKYEGNPVKTISWMKDGKPVPDH------NEPVFRIDSVR-KEDKGMYQCVIRNEQESAQA 209 (267)
Q Consensus 149 g~~v~l~C~~~~~p~~~~~W~~~~~~~~~~------~~~~l~i~~~~-~~d~g~y~C~~~~~~~~~~~ 209 (267)
|..+.|.|.+.|.|.|.++|++++..+... .+..|.|.++. .+|+|.|.|.|.|..|....
T Consensus 19 ~~~v~l~C~a~G~P~P~i~W~k~~~~i~~~~~~~~~~~g~L~I~~~~~~~D~G~Y~C~A~N~~G~~~s 86 (93)
T cd05849 19 EGKVSVNCRARANPFPIYKWRKNNLDIDLTNDRYSMVGGNLVINNPDKYKDAGRYVCIVSNIYGKVRS 86 (93)
T ss_pred CCeEEEeCcCccCCCCEEEEEECCEEccCCCCeEEEECCEEEECcCCcCCCCEEEEEEEEeCcceEEE
Confidence 457999999999999999999999877432 24678898875 68999999999999987654
No 109
>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs). Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv
Probab=99.34 E-value=7e-12 Score=76.98 Aligned_cols=61 Identities=25% Similarity=0.547 Sum_probs=51.0
Q ss_pred EEEEeEeCC-CCCceEEEEECCccCCCCC------------CCeEEeccCCCCCCeEEEEEEEcCCCCceEEEE
Q psy3045 152 AQFTCKYEG-NPVKTISWMKDGKPVPDHN------------EPVFRIDSVRKEDKGMYQCVIRNEQESAQASGE 212 (267)
Q Consensus 152 v~l~C~~~~-~p~~~~~W~~~~~~~~~~~------------~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~ 212 (267)
+.|.|.+.+ .|.+.+.|++++..+.... ...|.|..+..+|.|.|+|.|.|..|....++.
T Consensus 1 ~~l~C~~~g~~P~p~~~W~k~g~~l~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~ 74 (75)
T cd05750 1 LVLKCEATSEYPSLRFKWFKDGKELNRKNKPRNIKIRNKKKNSELQINKAKLADSGEYTCVVENILGNDTVTAN 74 (75)
T ss_pred CEEEEEccCCCCCceEEEEcCCeeccccCCcceEEEEecCceEEEEEccCCcccCeEEEEEEEEcCCceeEEEe
Confidence 468999999 8999999999998875321 356899999999999999999999988766543
No 110
>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=99.34 E-value=1.6e-11 Score=75.44 Aligned_cols=70 Identities=23% Similarity=0.318 Sum_probs=54.4
Q ss_pred CCeEEEEEEecc-----eeeeecccCcceeccccCCceEEEEeeEEEEeecccCCCeeEEEEEEcCCCccEEEEEEEE
Q psy3045 30 GESFALLCEAQE-----NMWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTV 102 (267)
Q Consensus 30 g~~v~l~C~~~~-----~~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~V 102 (267)
|+++.|.|.+.+ +.|++++.... . .....+....++.|.|.+++.+|+|.|+|.+.|..|.......|.|
T Consensus 1 G~~v~l~C~~~G~P~p~i~W~k~g~~i~--~-~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V 75 (76)
T cd05867 1 GETARLDCQVEGIPTPNITWSINGAPIE--G-TDPDPRRHVSSGALILTDVQPSDTAVYQCEARNRHGNLLANAHVHV 75 (76)
T ss_pred CCeEEEEEEeeEeCCCeEEEEECCEECC--C-CCCCceEEeeCCEEEECCCChhhCEEEEEEEECCCCeEEEEEEEEE
Confidence 789999999988 99999632111 1 1112344556678999999999999999999999999888888776
No 111
>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.
Probab=99.34 E-value=8.2e-12 Score=77.49 Aligned_cols=73 Identities=27% Similarity=0.432 Sum_probs=55.5
Q ss_pred CeEEEEEEecc-------eeeeecccCcceeccccCCceEEE-----EeeEEEEeecccCCCeeEEEEEEcCCCccEEEE
Q psy3045 31 ESFALLCEAQE-------NMWFKFIEGSSRKVAVPLNDRVKQ-----VSGTLIIKEAKVEDSGKYLCVVNNSVGGESVET 98 (267)
Q Consensus 31 ~~v~l~C~~~~-------~~W~~~~~~~~~~~~~~~~~~~~~-----~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~ 98 (267)
+++.|.|.+.. +.|++++.... .. ....++.. ..+.|.|.+++..|+|.|+|.|.+..+..+...
T Consensus 1 ~~~~l~C~v~~d~~l~~~~~W~~dg~~i~--~~-~~~~~~~~~~~~~~~~~L~I~nv~~~dsG~YtC~a~n~~~~~~a~a 77 (85)
T cd05853 1 ESIVLPCQVSHDHSLDIVFTWSFNGHLID--FQ-KDGDHFERVGGQDSAGDLMIRSIQLKHAGKYVCMVQTSVDKLSAAA 77 (85)
T ss_pred CcEEEEEEeccCCCCCcEEEEEECCEECc--cc-CCCccEEEeccCCCCCcEEEecCCHHHCEEEEEEEEcccCceEEEE
Confidence 57899999876 99999643221 10 11223332 345899999999999999999999999999999
Q ss_pred EEEEEecc
Q psy3045 99 VLTVTAPL 106 (267)
Q Consensus 99 ~l~V~~~~ 106 (267)
.|.|.++|
T Consensus 78 ~L~V~~pP 85 (85)
T cd05853 78 DLIVRGPP 85 (85)
T ss_pred EEEEecCC
Confidence 99998764
No 112
>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins. Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s
Probab=99.33 E-value=7.2e-12 Score=79.86 Aligned_cols=74 Identities=27% Similarity=0.388 Sum_probs=53.7
Q ss_pred eeEEecCCCeEEEEEEecc----eeeeecccCcceeccccCCceEE-E----EeeEEEEeecccCCCeeEEEEEEcCCCc
Q psy3045 23 IRFKKPGGESFALLCEAQE----NMWFKFIEGSSRKVAVPLNDRVK-Q----VSGTLIIKEAKVEDSGKYLCVVNNSVGG 93 (267)
Q Consensus 23 ~~~~v~~g~~v~l~C~~~~----~~W~~~~~~~~~~~~~~~~~~~~-~----~~~~l~i~~~~~~d~G~Y~C~~~~~~~~ 93 (267)
....+..|+++.|.|.+.+ +.|++.+.... ....+.. . ..++|+|.+++.+|+|.|+|.+.|..|.
T Consensus 8 ~~~~v~~G~~~~l~C~~~G~p~~i~W~~~~~~~~-----~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~g~ 82 (92)
T cd04977 8 SQGEISVGESKFFLCQVIGEPKDISWFSPNGEKL-----VTQQQISVVQNDDVRSTLTIYNANIEDAGIYKCVATDAKGT 82 (92)
T ss_pred CcEEECCCCeEEEEEEeEeeCCeEEEECCCCCEe-----ccCCCEEEEeCCCCEEEEEEecCCcccCEEEEEEEEcCCCC
Confidence 6788999999999999988 99997322111 1111211 1 2358999999999999999999998765
Q ss_pred -cEEEEEEE
Q psy3045 94 -ESVETVLT 101 (267)
Q Consensus 94 -~~~~~~l~ 101 (267)
....+.|.
T Consensus 83 ~~~~sv~l~ 91 (92)
T cd04977 83 ESEATVNLK 91 (92)
T ss_pred cceeEEEEE
Confidence 55665554
No 113
>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=99.33 E-value=1.1e-11 Score=79.15 Aligned_cols=78 Identities=29% Similarity=0.350 Sum_probs=59.1
Q ss_pred eeEEecCCCeEEEEEEecc----------eeeeecccCcceeccccCCceEEEEeeEEEEeecccCCCeeEEEEEEcCCC
Q psy3045 23 IRFKKPGGESFALLCEAQE----------NMWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYLCVVNNSVG 92 (267)
Q Consensus 23 ~~~~v~~g~~v~l~C~~~~----------~~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~ 92 (267)
....+.+|+.+.|.|.+.+ +.|+|++.... .......|+...+..|.|.++..+|+|.|+|.+.|..|
T Consensus 7 ~~~~v~~G~~~~L~C~~~g~~~~~~p~~~v~Wyk~~~~~~--~~~~~~~r~~~~~~~L~I~~~~~~DsG~Y~C~~~N~~g 84 (94)
T cd05756 7 KKSYVLEGEPVVIKCPLFYSYIAQSPGLNLTWYKSDGKTP--IPTEERSRMHQQKDLLWFLPAALEDSGLYTCVVRNSTY 84 (94)
T ss_pred eEEEEecCCCeEEECCCCCcccccCCCceEEEEEcCCCCc--ccccccceeeecCCeEEEccCCcccCeEEEEEEcCCCc
Confidence 4678889999999997553 99999743211 11112345555567899999999999999999999999
Q ss_pred ccEEEEEEEE
Q psy3045 93 GESVETVLTV 102 (267)
Q Consensus 93 ~~~~~~~l~V 102 (267)
.....+.|.|
T Consensus 85 ~~~~~~~L~v 94 (94)
T cd05756 85 CMKVSISLTV 94 (94)
T ss_pred cEEEEEEEEC
Confidence 8888777764
No 114
>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2. Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=99.32 E-value=2.9e-11 Score=77.39 Aligned_cols=81 Identities=28% Similarity=0.449 Sum_probs=57.3
Q ss_pred CcccCCCCceeEEecCC---CeEEEEEEecc-----eeeeecccCcceeccccCCceEEEEeeEEEEeecc-cCCCeeEE
Q psy3045 14 PTFSSVSDIIRFKKPGG---ESFALLCEAQE-----NMWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAK-VEDSGKYL 84 (267)
Q Consensus 14 P~~~~~~~~~~~~v~~g---~~v~l~C~~~~-----~~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~-~~d~G~Y~ 84 (267)
|.|...| .+..+.+| +++.|.|.+.+ ++|++++.... .....++...++.|.|.++. ..|+|.|+
T Consensus 2 P~f~~~P--~~~~~~~~~~g~~v~l~C~a~g~P~p~i~W~~~g~~l~----~~~~~~~~~~~g~L~I~~~~~~~D~G~Y~ 75 (94)
T cd05850 2 PVFEEQP--SSLLFPEGSPEEKVTLGCRARASPPATYRWKMNGTEIK----FAPESRYTLVAGNLVINNPQKARDAGSYQ 75 (94)
T ss_pred CeeEECC--CCEEecCCCCCCeEEEEeEceeCCCCEEEEEECCEECc----cCCCceEEEECCeEEEccCCccCcCEEEE
Confidence 6677766 56666555 68999999988 99999633221 11223455556789998865 58999999
Q ss_pred EEEEcCCCcc-EEEEEE
Q psy3045 85 CVVNNSVGGE-SVETVL 100 (267)
Q Consensus 85 C~~~~~~~~~-~~~~~l 100 (267)
|.|.|..|.. +..+.|
T Consensus 76 C~A~N~~G~~~s~~a~l 92 (94)
T cd05850 76 CLAINRCGTVVSREANL 92 (94)
T ss_pred EEEEcCcCcEEEEEEEE
Confidence 9999999974 444443
No 115
>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain. IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.
Probab=99.32 E-value=1.9e-11 Score=84.47 Aligned_cols=78 Identities=17% Similarity=0.321 Sum_probs=63.5
Q ss_pred CeEEeccCCCCCCeEEEEEEEcCCCCceEEEEEEEecccCCCeeecCCceeEEecCCcEEEEEEeecCCC--CcEEEEEC
Q psy3045 181 PVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPT--PEISWYLD 258 (267)
Q Consensus 181 ~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~--~~i~W~~~ 258 (267)
.+|.|.+++.+|+|.|.|.+.+..+.......|.+. .+|.+...+......+|..+.|.|.+.|+++ +.|.|+++
T Consensus 1 asL~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~l~v~---~~P~v~~~~~~~~~~~~~~~~L~C~a~g~~P~~~~i~W~~~ 77 (139)
T cd05771 1 ASLTLPGLTVHDEGTYICSVSTPPHQAQQIIQLSVS---EPPRVRLSLEKLVSMIEEPQTLICHIAGYYPLDVQVEWTRE 77 (139)
T ss_pred CeEEECCCCHHHCEEEEEEEEccCcceeeEEEEEEe---cCCceEEeCCCceeecCCcEEEEEEECCCCCCCeEEEEEEC
Confidence 368999999999999999999887777777777776 5777776665545557899999999999644 38999999
Q ss_pred CEE
Q psy3045 259 GKK 261 (267)
Q Consensus 259 ~~~ 261 (267)
|..
T Consensus 78 g~~ 80 (139)
T cd05771 78 PPG 80 (139)
T ss_pred CCC
Confidence 854
No 116
>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins. Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.
Probab=99.32 E-value=2.9e-11 Score=76.07 Aligned_cols=73 Identities=26% Similarity=0.541 Sum_probs=60.0
Q ss_pred CceEEEecCCCEEEEeEeCC-CCCceEEEEECCccCCCC---CCCeEEeccCCCCCCeEEEEEEEcCCCCceEEEEE
Q psy3045 141 PTVQTIDFGRPAQFTCKYEG-NPVKTISWMKDGKPVPDH---NEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGEL 213 (267)
Q Consensus 141 ~~~~~~~~g~~v~l~C~~~~-~p~~~~~W~~~~~~~~~~---~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l 213 (267)
+....+.+|+.++|.|.+.+ .|.+.+.|++++..+... ....|.|..+..+|+|.|.|.+.|..|....+..|
T Consensus 8 p~~~~v~~G~~v~L~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~~g~~~~~~~l 84 (85)
T cd05754 8 PRSQEVRPGADVSFICRAKSKSPAYTLVWTRVGGGLPSRAMDFNGILTIRNVQLSDAGTYVCTGSNMLDTDEATATL 84 (85)
T ss_pred CCceEEcCCCCEEEEEEcCCCCCCcEEEEEECCCcCCCcccccCCEEEECCCCHHHCEEEEEEEeccCCeEeEEEEE
Confidence 34457888999999999875 678899999988765432 35789999999999999999999999887776654
No 117
>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin. Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p
Probab=99.31 E-value=2.4e-11 Score=79.96 Aligned_cols=89 Identities=24% Similarity=0.314 Sum_probs=63.4
Q ss_pred CCcccCCCCceeEEe--cCCCeEEEEEEecc-----eeeeecccCcceeccccCCceEE--------EEeeEEEEeecc-
Q psy3045 13 APTFSSVSDIIRFKK--PGGESFALLCEAQE-----NMWFKFIEGSSRKVAVPLNDRVK--------QVSGTLIIKEAK- 76 (267)
Q Consensus 13 ~P~~~~~~~~~~~~v--~~g~~v~l~C~~~~-----~~W~~~~~~~~~~~~~~~~~~~~--------~~~~~l~i~~~~- 76 (267)
+|.|...+....+.. ..|..+.|.|.+.+ +.|++++..... ...++. ...+.|.|.++.
T Consensus 4 ~P~~~~~~~~~~~~~~~~~g~~v~L~C~a~G~P~p~i~W~k~g~~l~~-----~~~r~~~~~~~~~~~~~s~L~I~~v~~ 78 (109)
T cd05773 4 APDLQKGPQLRKVASRGDGSSDANLVCQAQGVPRVQFRWAKNGVPLDL-----GNPRYEETTEHTGTVHTSILTIINVSA 78 (109)
T ss_pred ccccccCCceEEEEEecCCCCEEEEEEECcccCCCEEEEEECCEECCC-----CCCeEEEEeeccCccceeEEEECcCCc
Confidence 678877764223322 35689999999988 999996432110 111221 123579999997
Q ss_pred cCCCeeEEEEEEcCCCccEEEEEEEEEecc
Q psy3045 77 VEDSGKYLCVVNNSVGGESVETVLTVTAPL 106 (267)
Q Consensus 77 ~~d~G~Y~C~~~~~~~~~~~~~~l~V~~~~ 106 (267)
.+|.|.|+|.|.|..|.....+.|.|...|
T Consensus 79 ~~D~G~Y~C~A~N~~G~~~~~i~L~~~~~p 108 (109)
T cd05773 79 ALDYALFTCTAHNSLGEDSLDIQLVSTSRP 108 (109)
T ss_pred cCCCEEEEEEEEeCCccCcEEEEEEecCCC
Confidence 589999999999999999999999887654
No 118
>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.
Probab=99.31 E-value=1.3e-11 Score=78.74 Aligned_cols=74 Identities=32% Similarity=0.480 Sum_probs=56.5
Q ss_pred eeEEecCCCeEEEEEEecc-----eeeeecccCcceeccccCCceEE----E-EeeEEEEeecccCCCeeEEEEEEcCCC
Q psy3045 23 IRFKKPGGESFALLCEAQE-----NMWFKFIEGSSRKVAVPLNDRVK----Q-VSGTLIIKEAKVEDSGKYLCVVNNSVG 92 (267)
Q Consensus 23 ~~~~v~~g~~v~l~C~~~~-----~~W~~~~~~~~~~~~~~~~~~~~----~-~~~~l~i~~~~~~d~G~Y~C~~~~~~~ 92 (267)
..+.+.+|+++.|.|.+.+ +.|++++... ....++. . ...+|.|.++..+|+|.|+|.+.|..|
T Consensus 9 ~~v~v~eG~~v~L~C~v~g~P~p~i~W~k~~~~~------~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G 82 (92)
T cd05891 9 DVVTIMEGKTLNLTCTVFGNPDPEVIWFKNDQDI------ELSEHYSVKLEQGKYASLTIKGVTSEDSGKYSINVKNKYG 82 (92)
T ss_pred CcEEEcCCCEEEEEEEEEEeCCCeEEEEECCEEC------CCCCCEEEEEcCCCEEEEEECCCChhhCEEEEEEEEeCCC
Confidence 5789999999999999877 9999963321 1112211 1 124799999999999999999999999
Q ss_pred ccEEEEEEEE
Q psy3045 93 GESVETVLTV 102 (267)
Q Consensus 93 ~~~~~~~l~V 102 (267)
.....+.|.|
T Consensus 83 ~~~~~~~v~~ 92 (92)
T cd05891 83 GETVDVTVSV 92 (92)
T ss_pred ceeeEEEEEC
Confidence 8887777654
No 119
>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin. Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula
Probab=99.31 E-value=4.7e-11 Score=75.69 Aligned_cols=81 Identities=21% Similarity=0.293 Sum_probs=59.2
Q ss_pred eeEEecCCCeEEEEEEecc----eeeeecccCcceeccccCCceEEEEeeEEEEeecccCCCeeEEEEEE-cCCCccEEE
Q psy3045 23 IRFKKPGGESFALLCEAQE----NMWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYLCVVN-NSVGGESVE 97 (267)
Q Consensus 23 ~~~~v~~g~~v~l~C~~~~----~~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~-~~~~~~~~~ 97 (267)
..+.+.+|+++.|.|.... +.|++..++...........+.......|.|.++..+|+|.|+|.+. +..+.....
T Consensus 4 ~~~~~~eG~~v~L~C~~~~p~p~v~Wykq~~g~~~~~~~~~~~r~~~~~~~L~I~~~~~~DsG~Y~C~a~~~~~~~~~~~ 83 (91)
T cd05871 4 KVVYGVENNSTFLECLPKSPQASVKWLFQRGGDQRKEEVKTEERLIHTERGLLLRSLQRSDAGVYTCTAVEHSFSQTLAK 83 (91)
T ss_pred eEEEEecCCcEEEEEECCCCCceEEEEEECCCCCccccccccccEEEecCeEEEeeCChhHCEEEEEEEEccCCeEEEEE
Confidence 4577899999999999644 99998644333222222345555666789999999999999999998 455556667
Q ss_pred EEEEEE
Q psy3045 98 TVLTVT 103 (267)
Q Consensus 98 ~~l~V~ 103 (267)
+.|.|.
T Consensus 84 ~~l~v~ 89 (91)
T cd05871 84 YTLHVI 89 (91)
T ss_pred EEEEEe
Confidence 777765
No 120
>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins. Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF
Probab=99.30 E-value=1.6e-11 Score=77.08 Aligned_cols=67 Identities=16% Similarity=0.321 Sum_probs=55.4
Q ss_pred CCCEEEEeEeCCC--CCceEEEEECCccCCCC--------------CCCeEEeccCCCCCCeEEEEEEEcCCCCceEEEE
Q psy3045 149 GRPAQFTCKYEGN--PVKTISWMKDGKPVPDH--------------NEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGE 212 (267)
Q Consensus 149 g~~v~l~C~~~~~--p~~~~~W~~~~~~~~~~--------------~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~ 212 (267)
|+.+.|.|.+.+. |.+.+.|.+++..+... ..+.|.|.+++.+|+|.|+|.|.|..+....+..
T Consensus 1 Ge~~~L~C~~~g~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~DsG~Y~C~a~n~~~~~~~s~~ 80 (84)
T cd05742 1 GETLVLNCTVLTELNEGVDFQWTYPGKKRGRGKSMVTRQSLSEATELSSTLTIPNATLKDSGTYTCAASSGTMDQKESTK 80 (84)
T ss_pred CCeEEEEEEEEeCCCccEEEEEecCCcccCCceEeecccccccceEEEEEEEECCCChhhCEEEEEEEccCCCceEEEEE
Confidence 6889999999998 78899999877654211 1357999999999999999999999988887777
Q ss_pred EEE
Q psy3045 213 LKL 215 (267)
Q Consensus 213 l~v 215 (267)
+.|
T Consensus 81 v~v 83 (84)
T cd05742 81 VNI 83 (84)
T ss_pred EEE
Confidence 655
No 121
>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.
Probab=99.30 E-value=2e-11 Score=76.90 Aligned_cols=77 Identities=23% Similarity=0.354 Sum_probs=56.4
Q ss_pred eEEecCCCeEEEEEEecc-----eeeeecccCcceeccccC-CceEEEEeeEEEEeecccCCCeeEEEEEEcCCCccEEE
Q psy3045 24 RFKKPGGESFALLCEAQE-----NMWFKFIEGSSRKVAVPL-NDRVKQVSGTLIIKEAKVEDSGKYLCVVNNSVGGESVE 97 (267)
Q Consensus 24 ~~~v~~g~~v~l~C~~~~-----~~W~~~~~~~~~~~~~~~-~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~ 97 (267)
...+.+|+++.|.|.+.+ +.|++++.... ..... ..+......+|.|.++..+|+|.|+|.+.|..|.....
T Consensus 3 ~~~v~~G~~~~L~C~~~g~P~p~i~W~k~g~~l~--~~~~~~~~~~~~~~~~l~i~~~~~~D~G~Y~C~a~N~~G~~~~~ 80 (85)
T cd05857 3 LHAVPAANTVKFRCPAAGNPTPTMRWLKNGKEFK--QEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHT 80 (85)
T ss_pred cEEcCCCCEEEEEEEcCCCCCCEEEEEECCEECC--CCCceeeeEEeCCceEEEEccCCcccCEEEEEEEEeCCCEEEEE
Confidence 356889999999999998 99999643221 11010 01112234579999999999999999999999998887
Q ss_pred EEEEE
Q psy3045 98 TVLTV 102 (267)
Q Consensus 98 ~~l~V 102 (267)
+.|.|
T Consensus 81 ~~l~v 85 (85)
T cd05857 81 YHLDV 85 (85)
T ss_pred EEEEC
Confidence 77764
No 122
>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=99.29 E-value=1.9e-11 Score=75.19 Aligned_cols=70 Identities=27% Similarity=0.337 Sum_probs=53.2
Q ss_pred CCeEEEEEEecc-----eeeeecccCcceeccccCCceEEEEeeEEEEeecccCCCeeEEEEEEcCCCccEEEEEEEE
Q psy3045 30 GESFALLCEAQE-----NMWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTV 102 (267)
Q Consensus 30 g~~v~l~C~~~~-----~~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~V 102 (267)
|+++.|.|.+.+ +.|++++.... .. ....+.......|.|.+++.+|+|.|+|.|.|..|.....+.|.|
T Consensus 1 G~~~~l~C~~~g~P~p~i~W~~~g~~~~--~~-~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~V 75 (76)
T cd04978 1 GETGRLDCEAEGIPQPTITWRLNGVPIE--EL-PPDPRRRVDGGTLILSNVQPNDTAVYQCNASNVHGYLLANAFVHV 75 (76)
T ss_pred CCeEEEEEEceeeCCCEEEEEECCEECC--CC-CCcceEEccCCEEEECCCChhhCEEEEEEEEccCCeEEEeEEEEE
Confidence 789999999988 99998633111 10 001123345578999999999999999999999999888888776
No 123
>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5. Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.
Probab=99.29 E-value=3e-11 Score=77.29 Aligned_cols=75 Identities=29% Similarity=0.492 Sum_probs=54.4
Q ss_pred CcccCCCCceeEEec---CCCeEEEEEEecc-----eeeeecccCcceeccccCCceEEEEeeEEEEeecc-cCCCeeEE
Q psy3045 14 PTFSSVSDIIRFKKP---GGESFALLCEAQE-----NMWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAK-VEDSGKYL 84 (267)
Q Consensus 14 P~~~~~~~~~~~~v~---~g~~v~l~C~~~~-----~~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~-~~d~G~Y~ 84 (267)
|.|...| .++.+. +|+.+.|.|.+.+ +.|++++.... .....++...++.|.|.++. ..|+|.|+
T Consensus 2 P~f~~~p--~~~~~~~~~~g~~v~l~C~~~G~P~P~i~W~k~g~~l~----~~~~~~~~~~~g~L~i~~~~~~~D~G~Y~ 75 (94)
T cd05848 2 PVFVQEP--DDAIFPTDSDEKKVILNCEARGNPVPTYRWLRNGTEID----TESDYRYSLIDGNLIISNPSEVKDSGRYQ 75 (94)
T ss_pred CeeEECC--CcEEccCCCCCCEEEEEEEeeecCCCEEEEEECCeECc----cCCCceEEeeCCeEEEccCCccCcCEEEE
Confidence 6677776 455443 5789999999999 99999633211 11123444556789998875 68999999
Q ss_pred EEEEcCCCcc
Q psy3045 85 CVVNNSVGGE 94 (267)
Q Consensus 85 C~~~~~~~~~ 94 (267)
|.|.|..|..
T Consensus 76 C~A~N~~G~~ 85 (94)
T cd05848 76 CLATNSIGSI 85 (94)
T ss_pred EEEEcCCCeE
Confidence 9999999874
No 124
>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=99.29 E-value=4.3e-11 Score=76.12 Aligned_cols=76 Identities=25% Similarity=0.342 Sum_probs=57.1
Q ss_pred CCeEEEEEEecc-----eeeeecccCccee--ccccCCceEEE-EeeEEEEeecccCCCeeEEEEEEcCCCccEEEEEEE
Q psy3045 30 GESFALLCEAQE-----NMWFKFIEGSSRK--VAVPLNDRVKQ-VSGTLIIKEAKVEDSGKYLCVVNNSVGGESVETVLT 101 (267)
Q Consensus 30 g~~v~l~C~~~~-----~~W~~~~~~~~~~--~~~~~~~~~~~-~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~ 101 (267)
|+++.|.|.+.+ +.|++++...... .......++.. .++.|.|.++..+|+|.|+|.+.|..|.....+.|.
T Consensus 1 G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~~~r~~v~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~ 80 (90)
T cd05726 1 GRTVTFQCEATGNPQPAIFWQKEGSQNLLFSYQPPQSSSRFSVSQTGDLTITNVQRSDVGYYICQTLNVAGSILTKAYLE 80 (90)
T ss_pred CCEEEEEEECCccCCCEEEEEeCCCcceeecccCCCCCCeEEECCCCeEEEeeCChhhCEEEEEEEEcCCCceEEEEEEE
Confidence 789999999988 9999963321100 00112334443 356899999999999999999999999998899999
Q ss_pred EEec
Q psy3045 102 VTAP 105 (267)
Q Consensus 102 V~~~ 105 (267)
|...
T Consensus 81 V~~~ 84 (90)
T cd05726 81 VTDV 84 (90)
T ss_pred Eeec
Confidence 9864
No 125
>cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of
Probab=99.29 E-value=3.8e-11 Score=76.16 Aligned_cols=80 Identities=26% Similarity=0.463 Sum_probs=60.2
Q ss_pred eeEEecCCCeEEEEEEe------------cc----eeeeecccCcceeccccC-CceEEEEeeEEEEeecccCCCeeEEE
Q psy3045 23 IRFKKPGGESFALLCEA------------QE----NMWFKFIEGSSRKVAVPL-NDRVKQVSGTLIIKEAKVEDSGKYLC 85 (267)
Q Consensus 23 ~~~~v~~g~~v~l~C~~------------~~----~~W~~~~~~~~~~~~~~~-~~~~~~~~~~l~i~~~~~~d~G~Y~C 85 (267)
..+.+.+|+++.|.|.. .. +.|+|++........... ..|+...+..|.|.++..+|+|.|+|
T Consensus 8 ~~~~~~~GE~v~l~C~~~~~~~~~~~~~~~~~~~~v~WyK~~~~~~~~~~~~~~~~Ri~~~~~~Lwf~Pa~~eDSG~Y~C 87 (104)
T cd05896 8 KKYMVLAGEPVRIKCALFYGYIRTNYSMAQSAGLSLMWYKSSGDGEEPIEIIFDGVRMSKEEDSIWFRPAELQDSGLYTC 87 (104)
T ss_pred eeEEEcCCCeEEEECCCccccccccccccccCCceEEEEECCCCCCCCCcccccceeEEEeCCEEEEEeCChhhCeEEEE
Confidence 46889999999999997 22 899997422222221111 25888889999999999999999999
Q ss_pred EEEcCCCccEEEEEEEE
Q psy3045 86 VVNNSVGGESVETVLTV 102 (267)
Q Consensus 86 ~~~~~~~~~~~~~~l~V 102 (267)
.+.|+.......+.|+|
T Consensus 88 ~~rN~t~C~~~~i~l~V 104 (104)
T cd05896 88 VLRNSTYCMKVSMSLTV 104 (104)
T ss_pred EECCCCcceEEEEEEEC
Confidence 99998876666665543
No 126
>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1. Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.29 E-value=3.2e-11 Score=76.88 Aligned_cols=81 Identities=31% Similarity=0.507 Sum_probs=57.0
Q ss_pred CCcccCCCCceeEEecCC---CeEEEEEEecc-----eeeeecccCcceeccccCCceEEEEeeEEEEeecc-cCCCeeE
Q psy3045 13 APTFSSVSDIIRFKKPGG---ESFALLCEAQE-----NMWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAK-VEDSGKY 83 (267)
Q Consensus 13 ~P~~~~~~~~~~~~v~~g---~~v~l~C~~~~-----~~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~-~~d~G~Y 83 (267)
+|.|...| ....+.++ ..+.|.|.+.| +.|++++.... ....++...++.|.|.++. ..|+|.|
T Consensus 1 ~P~f~~~P--~~~~~~~~~~~~~v~l~C~a~G~P~P~i~W~k~~~~i~-----~~~~~~~~~~g~L~I~~~~~~~D~G~Y 73 (93)
T cd05849 1 GPVFEEQP--IDTIYPEESTEGKVSVNCRARANPFPIYKWRKNNLDID-----LTNDRYSMVGGNLVINNPDKYKDAGRY 73 (93)
T ss_pred CCEEEECC--CCEEecCCccCCeEEEeCcCccCCCCEEEEEECCEEcc-----CCCCeEEEECCEEEECcCCcCCCCEEE
Confidence 36777666 45555544 48999999999 99999633211 1233555567789999885 5899999
Q ss_pred EEEEEcCCCcc-EEEEEE
Q psy3045 84 LCVVNNSVGGE-SVETVL 100 (267)
Q Consensus 84 ~C~~~~~~~~~-~~~~~l 100 (267)
+|.|.|..|.. +..+.|
T Consensus 74 ~C~A~N~~G~~~s~~a~l 91 (93)
T cd05849 74 VCIVSNIYGKVRSREATL 91 (93)
T ss_pred EEEEEeCcceEEEccEEE
Confidence 99999999874 334443
No 127
>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.
Probab=99.28 E-value=2.6e-11 Score=78.40 Aligned_cols=80 Identities=20% Similarity=0.146 Sum_probs=58.2
Q ss_pred eEEecCCCeEEEEEEecc-----eeeeecccCcceeccccC--CceE--EEEeeEEEEeecccCCCeeEEEEEEcCCCcc
Q psy3045 24 RFKKPGGESFALLCEAQE-----NMWFKFIEGSSRKVAVPL--NDRV--KQVSGTLIIKEAKVEDSGKYLCVVNNSVGGE 94 (267)
Q Consensus 24 ~~~v~~g~~v~l~C~~~~-----~~W~~~~~~~~~~~~~~~--~~~~--~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~ 94 (267)
...+..|+.+.|.|.+.+ +.|+|++........... ...+ ....++|.|.++..+|+|.|+|.|.|..|..
T Consensus 12 ~~~~~~~~~~~l~~~v~g~P~P~v~W~kdg~~l~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~D~G~Ytc~A~N~~g~~ 91 (101)
T cd05859 12 LEFANLHEVKEFVVEVEAYPPPQIRWLKDNRTLIENLTEITTSEHNVQETRYVSKLKLIRAKEEDSGLYTALAQNEDAVK 91 (101)
T ss_pred eEEEecCCcEEEEEEEEEeCCCceEEEECCEECcCCcceEEeccccccceeeccEEEEeeCCHHHCEEEEEEEEcCCceE
Confidence 568889999999999999 999997432211110000 0000 1123589999999999999999999999988
Q ss_pred EEEEEEEEE
Q psy3045 95 SVETVLTVT 103 (267)
Q Consensus 95 ~~~~~l~V~ 103 (267)
+..+.|.|.
T Consensus 92 ~~t~~l~V~ 100 (101)
T cd05859 92 SYTFALQIQ 100 (101)
T ss_pred EEEEEEEEE
Confidence 888887764
No 128
>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.
Probab=99.28 E-value=4e-11 Score=76.19 Aligned_cols=73 Identities=27% Similarity=0.533 Sum_probs=51.7
Q ss_pred CCeEEEEEEecc-----eeeeeccc--Ccceecc-cc--------CCceEEEEeeEEEEeecccCCCeeEEEEEEcCCCc
Q psy3045 30 GESFALLCEAQE-----NMWFKFIE--GSSRKVA-VP--------LNDRVKQVSGTLIIKEAKVEDSGKYLCVVNNSVGG 93 (267)
Q Consensus 30 g~~v~l~C~~~~-----~~W~~~~~--~~~~~~~-~~--------~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~ 93 (267)
|+.++|.|.+.+ ++|+|++. +...... .. ...........|.|.+++.+|+|.|+|.|.|..|.
T Consensus 1 G~~v~l~C~v~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~ 80 (90)
T cd04974 1 GSDVEFHCKVYSDAQPHIQWLKHVEVNGSKYGPDGLPYVTVLKVAGINTTDNESEVLYLRNVSFDDAGEYTCLAGNSIGP 80 (90)
T ss_pred CCcEEEEEEEeCCCCCeEEEEEecccCCceeCCCCCceEEEEEecCCcccccccceEEEeccccccCcEEEEEeecccCc
Confidence 789999999999 99999631 1110000 00 00111112357999999999999999999999999
Q ss_pred cEEEEEEEE
Q psy3045 94 ESVETVLTV 102 (267)
Q Consensus 94 ~~~~~~l~V 102 (267)
....+.|.|
T Consensus 81 ~~~sa~L~V 89 (90)
T cd04974 81 SHHSAWLTV 89 (90)
T ss_pred ccCCEEEEe
Confidence 888888876
No 129
>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.
Probab=99.28 E-value=1.4e-11 Score=72.98 Aligned_cols=61 Identities=25% Similarity=0.280 Sum_probs=47.8
Q ss_pred EEEEEEecc-----eeeeecccCcceeccccCCceEEEEeeEEEEeecccCCCeeEEEEEEcCCCccEEEEEEEEE
Q psy3045 33 FALLCEAQE-----NMWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTVT 103 (267)
Q Consensus 33 v~l~C~~~~-----~~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~V~ 103 (267)
+.|.|.+.+ +.|+|++.... . ....+.|.|.++..+|+|.|+|.+.|..|..+..+.+.+.
T Consensus 1 ~~l~c~v~g~P~P~v~W~kdg~~l~--------~--~~~~~~L~i~~v~~~D~G~YtC~a~N~~g~~~~~~~~~l~ 66 (67)
T cd05863 1 VKLPVKVAAYPPPEFQWYKDGKLIS--------G--KHSQHSLQIKDVTEASAGTYTLVLWNSAAGLEKRISLELI 66 (67)
T ss_pred CEEEEEEEEeCCCEEEEEECCEECc--------c--cCCcCEEEECCCCHHHCEEEEEEEEECCccEEEEEEEEEE
Confidence 579999999 99999643221 1 1134589999999999999999999999987777776654
No 130
>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin. Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.28 E-value=2.6e-11 Score=73.85 Aligned_cols=67 Identities=27% Similarity=0.419 Sum_probs=52.6
Q ss_pred CCeEEEEEEecc-----eeeeecccCcceeccccCCceEEE-EeeEEEEeecccCCCeeEEEEEEcCCCccEEEEEEEE
Q psy3045 30 GESFALLCEAQE-----NMWFKFIEGSSRKVAVPLNDRVKQ-VSGTLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTV 102 (267)
Q Consensus 30 g~~v~l~C~~~~-----~~W~~~~~~~~~~~~~~~~~~~~~-~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~V 102 (267)
|+++.|.|.+.+ +.|++++.. +....++.. .+.+|.|.+++.+|+|.|+|.+.|..|.....+.|.|
T Consensus 1 G~~v~L~C~~~g~P~p~v~W~k~~~~------~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 73 (73)
T cd04969 1 GGDVIIECKPKAAPKPTISWSKGTEL------LTNSSRICIWPDGSLEILNVTKSDEGKYTCFAENFFGKANSTGSLSV 73 (73)
T ss_pred CCeEEEEEeeeEcCCCEEEEEECCEE------cccCCCEEECCCCeEEEccCChhHCEEEEEEEECCCCceEEEEEEEC
Confidence 789999999988 999996332 122333333 3467999999999999999999999999888777764
No 131
>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago
Probab=99.28 E-value=4.2e-11 Score=75.59 Aligned_cols=74 Identities=32% Similarity=0.436 Sum_probs=54.4
Q ss_pred eeEEecCCCeEEEEEEe-cc-----eeeeecccCcceeccccCCceEE-EEeeEEEEeecccCCCeeEEEEEEcCCCcc-
Q psy3045 23 IRFKKPGGESFALLCEA-QE-----NMWFKFIEGSSRKVAVPLNDRVK-QVSGTLIIKEAKVEDSGKYLCVVNNSVGGE- 94 (267)
Q Consensus 23 ~~~~v~~g~~v~l~C~~-~~-----~~W~~~~~~~~~~~~~~~~~~~~-~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~- 94 (267)
.+..+.+|+++.|.|.+ .+ +.|++++..... ...+.. ..++.|.|.+++.+|+|.|+|.+.|..|..
T Consensus 4 ~~~~~~~G~~v~l~C~~~~g~p~p~i~W~k~g~~~~~-----~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~ 78 (86)
T cd05724 4 SDTQVAVGEMAVLECSPPRGHPEPTVSWRKDGQPLNL-----DNERVRIVDDGNLLIAEARKSDEGTYKCVATNMVGERE 78 (86)
T ss_pred ccEEEeCCCCEEEEEECCCCCCCCEEEEEECCEECCC-----CCCCEEEccCCEEEEeECCcccCEEEEEEEEeccCcee
Confidence 67889999999999997 44 999996332111 122222 235689999999999999999999998874
Q ss_pred EEEEEEE
Q psy3045 95 SVETVLT 101 (267)
Q Consensus 95 ~~~~~l~ 101 (267)
+..+.|.
T Consensus 79 s~~~~l~ 85 (86)
T cd05724 79 SAAARLS 85 (86)
T ss_pred eeeEEEE
Confidence 4555544
No 132
>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin. Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.28 E-value=2.7e-11 Score=76.22 Aligned_cols=76 Identities=26% Similarity=0.340 Sum_probs=53.9
Q ss_pred CeEEEEEEecc-------eeeeecccCcceecc-ccCCce-EEEEeeEEEEeecccCCCeeEEEEEEcCCCccEEEEEEE
Q psy3045 31 ESFALLCEAQE-------NMWFKFIEGSSRKVA-VPLNDR-VKQVSGTLIIKEAKVEDSGKYLCVVNNSVGGESVETVLT 101 (267)
Q Consensus 31 ~~v~l~C~~~~-------~~W~~~~~~~~~~~~-~~~~~~-~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~ 101 (267)
+++.|.|.+.+ +.|++++........ ..+..+ .....++|.|.+++..|+|.|+|.+.|..|..+....|.
T Consensus 1 e~~~L~C~~~g~P~p~i~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~ 80 (85)
T cd04970 1 ESITLQCHASHDPTLDLTFTWSFNGVPIDFDKDGGHYRRVGGKDSNGDLMIRNAQLKHAGKYTCTAQTVVDSLSASADLI 80 (85)
T ss_pred CcEEEEEEEecCCCCCeEEEEEECCeEeeccCCCccEEEEecccccceEEEccCCHHhCeeeEEEEecCCCcEEEEEEEE
Confidence 57899999998 589996332111000 000001 112456899999999999999999999999999999999
Q ss_pred EEecc
Q psy3045 102 VTAPL 106 (267)
Q Consensus 102 V~~~~ 106 (267)
|.++|
T Consensus 81 V~~pP 85 (85)
T cd04970 81 VRGPP 85 (85)
T ss_pred EECCC
Confidence 88753
No 133
>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.
Probab=99.27 E-value=2.4e-11 Score=74.73 Aligned_cols=58 Identities=29% Similarity=0.575 Sum_probs=47.1
Q ss_pred EEEEeEeCCCCCceEEEEECCccCCCC---------CCCeEEeccCCC----CCCeEEEEEEEcCCCCceE
Q psy3045 152 AQFTCKYEGNPVKTISWMKDGKPVPDH---------NEPVFRIDSVRK----EDKGMYQCVIRNEQESAQA 209 (267)
Q Consensus 152 v~l~C~~~~~p~~~~~W~~~~~~~~~~---------~~~~l~i~~~~~----~d~g~y~C~~~~~~~~~~~ 209 (267)
+.|.|.+.|.|.|.++|++++..+... ....|.|..+.. +|+|.|.|.|.|..|...+
T Consensus 1 i~l~C~~~G~P~P~v~W~k~g~~l~~~~~~~~~~~~~~g~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s 71 (77)
T cd05733 1 IVIKCEAKGNPPPTFSWTRNGTHFDPEKDPRVTMKPDSGTLVIDNMNGGRAEDYEGEYQCYASNELGTAIS 71 (77)
T ss_pred CEEEeeCcccCCCeEEEEECCeECCCCCCCCEEEeCCCCEEEEeccCCCCCcCCCEEEEEEEEcCCCcEEc
Confidence 478999999999999999999876421 346788887743 6899999999999987543
No 134
>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D. Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas
Probab=99.26 E-value=7.7e-11 Score=73.44 Aligned_cols=63 Identities=24% Similarity=0.488 Sum_probs=52.8
Q ss_pred CceEEEecCCCEEEEeEeCCCCCceEEEEECCccCCCCC------CCeEEeccCCCCCCeEEEEEEEcCC
Q psy3045 141 PTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHN------EPVFRIDSVRKEDKGMYQCVIRNEQ 204 (267)
Q Consensus 141 ~~~~~~~~g~~v~l~C~~~~~p~~~~~W~~~~~~~~~~~------~~~l~i~~~~~~d~g~y~C~~~~~~ 204 (267)
|.+..+..|+++.|.|.+.+ +.+.+.|++||.++..+. ...|.|.+++.+|+|.|+|.+.+..
T Consensus 3 P~~~~v~~G~~v~L~C~~~~-~~~~i~W~~ng~~i~~~~~r~~~~~~~L~I~nv~~~DsG~Y~C~a~e~~ 71 (87)
T cd05873 3 PRQRTFKLGNNAELKCSPKS-NLARVVWKFDGKVLTPESAKYLLYRDGLLIFNASEADAGRYQCLSVEKS 71 (87)
T ss_pred cceEEEECCCCEEEEEECCC-CCCeEEEEECCEECCCCCceEEEECCcEEEeCCCHHHCEEEEEEEEecc
Confidence 44558889999999999754 677999999999886542 3579999999999999999998864
No 135
>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin. Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.
Probab=99.26 E-value=7e-11 Score=75.00 Aligned_cols=79 Identities=19% Similarity=0.209 Sum_probs=57.6
Q ss_pred eeEEecCCCeEEEEEEecc----eeeeecccCcceeccccCCceEEEEeeEEEEeecccCCCeeEEEEEEcCCCc-cEEE
Q psy3045 23 IRFKKPGGESFALLCEAQE----NMWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYLCVVNNSVGG-ESVE 97 (267)
Q Consensus 23 ~~~~v~~g~~v~l~C~~~~----~~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~-~~~~ 97 (267)
..+.+.+|+++.|.|.+.+ +.|++++..... ......++......|.|.+++.+|+|.|+|.+.+..+. ....
T Consensus 4 ~~~~v~~g~~v~L~C~~~~p~~~i~W~k~~~~~~~--~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~~~~~~~~~~~ 81 (89)
T cd04979 4 KVVTVVEGNSVFLECSPKSNLASVVWLFQGGPLQR--KEEPEERLLVTEDGLLIRSVSPADAGVYTCQSVEHGFKQTLAT 81 (89)
T ss_pred eEEEEECCCcEEEEEeCCCCCceEEEEECCccccc--ccCcCceEEEcCCCEEEccCCHHHCEEEEEEEecCccceeEeE
Confidence 6778999999999999877 999997443211 11112345455567999999999999999999876543 5566
Q ss_pred EEEEEE
Q psy3045 98 TVLTVT 103 (267)
Q Consensus 98 ~~l~V~ 103 (267)
..|.|.
T Consensus 82 ~~l~V~ 87 (89)
T cd04979 82 YSLNVL 87 (89)
T ss_pred EEEEEe
Confidence 666664
No 136
>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin. Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.
Probab=99.26 E-value=1.3e-11 Score=75.21 Aligned_cols=65 Identities=31% Similarity=0.344 Sum_probs=49.0
Q ss_pred EEEEEEecc-----eeeeecccCcceeccccCCceEEEEe-----eEEEEeecccCCCeeEEEEEEcCCCccEEEEEEEE
Q psy3045 33 FALLCEAQE-----NMWFKFIEGSSRKVAVPLNDRVKQVS-----GTLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTV 102 (267)
Q Consensus 33 v~l~C~~~~-----~~W~~~~~~~~~~~~~~~~~~~~~~~-----~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~V 102 (267)
|.|.|.+.| +.|+|++.... ....++.... .+|.|.++..+|+|.|+|.|.|..|..+....|.|
T Consensus 1 v~l~C~v~G~P~P~v~W~k~~~~l~-----~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~a~L~V 75 (75)
T cd05893 1 VRLECRVSGVPHPQIFWKKENESLT-----HNTDRVSMHQDNCGYICLLIQGATKEDAGWYTVSAKNEAGIVSCTARLDV 75 (75)
T ss_pred CEEEEEEeEecCCEEEEEECCEECC-----CCCCeEEEEEcCCCEEEEEECCCCHHHCEEEEEEEEcCCCEEEEEEEEeC
Confidence 579999999 99999643221 1123333321 26999999999999999999999999888877764
No 137
>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin. Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.
Probab=99.25 E-value=5.3e-11 Score=72.44 Aligned_cols=65 Identities=26% Similarity=0.343 Sum_probs=48.9
Q ss_pred EEEEEEecc-----eeeeecccCcceeccccCCceEEEE--e---eEEEEeecccCCCeeEEEEEEcCCCccEEEEEEEE
Q psy3045 33 FALLCEAQE-----NMWFKFIEGSSRKVAVPLNDRVKQV--S---GTLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTV 102 (267)
Q Consensus 33 v~l~C~~~~-----~~W~~~~~~~~~~~~~~~~~~~~~~--~---~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~V 102 (267)
|.|.|.+.+ +.|+|++.... ....++... + .+|.|.++..+|+|.|+|.+.|..|.......|.|
T Consensus 1 v~l~C~v~G~P~P~i~W~k~~~~i~-----~~~~r~~~~~~~~g~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~a~L~V 75 (75)
T cd05892 1 VKLECQISAIPPPKIFWKRNNEMVQ-----YNTDRISLYQDNSGRVTLLIKNVNKKDAGWYTVSAVNEAGVATCHARLDV 75 (75)
T ss_pred CEEEEEEEecCCCeEEEEECCEECc-----CCCCeEEEEEcCCCcEEEEECCCChhhCEEEEEEEEcCcCeEEEEEEEeC
Confidence 579999998 99999632111 112343321 1 27999999999999999999999999888887764
No 138
>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process
Probab=99.25 E-value=4.5e-11 Score=73.48 Aligned_cols=61 Identities=18% Similarity=0.487 Sum_probs=49.4
Q ss_pred EEEEeEeCC-CCCceEEEEECCccCCCC-------------CCCeEEeccCCCCCCeEEEEEEEcCCCCceEEEE
Q psy3045 152 AQFTCKYEG-NPVKTISWMKDGKPVPDH-------------NEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGE 212 (267)
Q Consensus 152 v~l~C~~~~-~p~~~~~W~~~~~~~~~~-------------~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~ 212 (267)
+.|.|.+.+ .|.+.+.|++++..+... ....|.|.++..+|+|.|+|.+.|..|....+..
T Consensus 1 ~~L~C~a~~~~p~~~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~a~N~~g~~~~~~~ 75 (76)
T cd05895 1 LVLRCETVSEYPSLRFKWFKNGKEIGAKNKPDNKIKIRKKKKSSELQISKASLADNGEYKCMVSSKLGNDSVTAN 75 (76)
T ss_pred CEEEEecccCCCCCceEEEECCcccccCCCCCceEEEEeCCcEEEEEECcCCcccCEEEEEEEEeCCCceeEEEe
Confidence 468999864 577899999999887532 1256899999999999999999999987766543
No 139
>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa
Probab=99.25 E-value=3.9e-11 Score=72.50 Aligned_cols=65 Identities=23% Similarity=0.325 Sum_probs=50.4
Q ss_pred EEEEEEecc-----eeeeecccCcceeccccCCceEEEEeeEEEEeecccCCCeeEEEEEEcCCCccEEEEEEEEE
Q psy3045 33 FALLCEAQE-----NMWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTVT 103 (267)
Q Consensus 33 v~l~C~~~~-----~~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~V~ 103 (267)
+.|.|.+.+ +.|+|++... ....+......+|.|.++..+|+|.|+|.+.|..|.......+.|.
T Consensus 1 ~~l~c~v~g~P~p~v~W~k~g~~l------~~~~~~~~~~~~L~I~~v~~~D~G~YtC~a~N~~g~~~~~~~~~~~ 70 (71)
T cd04976 1 VRLPVKVKAYPPPEIQWYKNGKLI------SEKNRTKKSGHSLTIKDVTEEDAGNYTVVLTNKQAKLEKRLTFTLV 70 (71)
T ss_pred CEEEeEEEEeCCCEEEEEECCEEC------CCCCEEEcCCCEEEECcCCHHHCEEEEEEEEcCCccEEEEEEEEEE
Confidence 479999998 9999964321 2223444556789999999999999999999999987777776654
No 140
>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=99.25 E-value=4.8e-11 Score=73.27 Aligned_cols=58 Identities=28% Similarity=0.568 Sum_probs=46.1
Q ss_pred EEEEeEeCCCCCceEEEEECCccCCCC---------CCCeEEeccCCC----CCCeEEEEEEEcCCCCceE
Q psy3045 152 AQFTCKYEGNPVKTISWMKDGKPVPDH---------NEPVFRIDSVRK----EDKGMYQCVIRNEQESAQA 209 (267)
Q Consensus 152 v~l~C~~~~~p~~~~~W~~~~~~~~~~---------~~~~l~i~~~~~----~d~g~y~C~~~~~~~~~~~ 209 (267)
+.|.|.+.|.|.|+++|++++.++... ..+.|.|..+.. .|.|.|+|.|.|..|...+
T Consensus 1 ~~l~C~a~G~P~P~i~W~k~g~~l~~~~~~~~~~~~~~g~l~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s 71 (77)
T cd05874 1 IVIQCEAKGKPPPSFSWTRNGTHFDIDKDPKVTMKPNTGTLVINIMNGEKAEAYEGVYQCTARNERGAAVS 71 (77)
T ss_pred CEEEeeCcccCCCeEEEEECCeECCCcCCCCEEEeCCCceEEEeccccCCCCCCCEEEEEEEEcCCCeEEe
Confidence 478999999999999999999876321 346777776654 3789999999999987654
No 141
>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily. Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.25 E-value=5.9e-11 Score=73.99 Aligned_cols=73 Identities=27% Similarity=0.442 Sum_probs=52.3
Q ss_pred CCeEEEEEEecc-----eeeeecccCcceeccc--cCCceEE-EEeeEEEEeecccCCCeeEEEEEEcCCCccEEEEEEE
Q psy3045 30 GESFALLCEAQE-----NMWFKFIEGSSRKVAV--PLNDRVK-QVSGTLIIKEAKVEDSGKYLCVVNNSVGGESVETVLT 101 (267)
Q Consensus 30 g~~v~l~C~~~~-----~~W~~~~~~~~~~~~~--~~~~~~~-~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~ 101 (267)
|+++.|.|.+.+ +.|+++..+....... ....++. .....|.|.++..+|+|.|+|.+.|..|.....+.|.
T Consensus 1 G~~v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~ 80 (81)
T cd05765 1 GETASFHCDVTGRPPPEITWEKQVHGKENLIMRPNHVRGNVVVTNIGQLVIYNAQPQDAGLYTCTARNSGGLLRANFPLS 80 (81)
T ss_pred CCcEEEEeeccccCCCcEEEEecCCCCcceeecCCcccCCEEEccccEEEEccCCcccCEEEEEEEecCCceEEEEEEEe
Confidence 789999999988 9999964322111100 1111222 2346899999999999999999999999888777776
Q ss_pred E
Q psy3045 102 V 102 (267)
Q Consensus 102 V 102 (267)
|
T Consensus 81 v 81 (81)
T cd05765 81 V 81 (81)
T ss_pred C
Confidence 4
No 142
>PHA03376 BARF1; Provisional
Probab=99.24 E-value=1.2e-10 Score=80.74 Aligned_cols=122 Identities=19% Similarity=0.264 Sum_probs=77.7
Q ss_pred eeEEecCCCeEEEEEEecc--------eeeeecccCc-----------ceeccccCCceEEE----EeeEEEEeecccCC
Q psy3045 23 IRFKKPGGESFALLCEAQE--------NMWFKFIEGS-----------SRKVAVPLNDRVKQ----VSGTLIIKEAKVED 79 (267)
Q Consensus 23 ~~~~v~~g~~v~l~C~~~~--------~~W~~~~~~~-----------~~~~~~~~~~~~~~----~~~~l~i~~~~~~d 79 (267)
..+.+..|+.+.|.|.... +.|+|...+. .......+..++.. ++-+|.|.+++.+|
T Consensus 19 ~pVta~VGEda~LsC~lnp~ssa~~MrIrWqKs~p~~~~VvL~~~ggdVv~~QmEyRGrtD~~~~~gnvsLvI~~l~lSD 98 (221)
T PHA03376 19 QAVTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAANISH 98 (221)
T ss_pred cchhheeCCcEEEEecccCccCCCceEEEEEecCCCCCCEEEEEcCCeeeeeeeccccEEEEEecCCeEEEEEEeeeecC
Confidence 3677889999999999884 9999953210 01111123333332 34589999999999
Q ss_pred CeeEEEEEEcCCCccEEEEEEEEEeccccccCCceEEEeCCCceEEEEEeecCCCcccccCCceEEEecCCCEEEEeEeC
Q psy3045 80 SGKYLCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYE 159 (267)
Q Consensus 80 ~G~Y~C~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~ 159 (267)
.|.|+|.+..........-.|++..+....+..... ....-+..++.|.+.
T Consensus 99 dGtY~C~fQkge~~~~k~ehLt~V~~~~Lsv~a~~~-----------------------------dFp~~~~~~i~C~sg 149 (221)
T PHA03376 99 DGNYLCRMKLGETEVTKQEHLSVVKPLTLSVHSERS-----------------------------QFPDFSVLTVTCTVN 149 (221)
T ss_pred CceEEEEEEcCCCceeeeeeeeeeecceEEEEeccc-----------------------------cCCCCCeeEEEEecC
Confidence 999999998766555444445444322211111000 111135578999988
Q ss_pred CCCCceEEEEECCc
Q psy3045 160 GNPVKTISWMKDGK 173 (267)
Q Consensus 160 ~~p~~~~~W~~~~~ 173 (267)
|+|.|.+.|..+..
T Consensus 150 gfP~P~~~Wle~~~ 163 (221)
T PHA03376 150 AFPHPHVQWLMPEG 163 (221)
T ss_pred CcCCchheeccccC
Confidence 89999999997543
No 143
>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=99.24 E-value=5e-11 Score=74.28 Aligned_cols=62 Identities=23% Similarity=0.367 Sum_probs=52.7
Q ss_pred EEecCCCEEEEeEeCC-CCCceEEEEECCccCCC-CCCCeEEeccCCCCCCeEEEEEEEcCCCC
Q psy3045 145 TIDFGRPAQFTCKYEG-NPVKTISWMKDGKPVPD-HNEPVFRIDSVRKEDKGMYQCVIRNEQES 206 (267)
Q Consensus 145 ~~~~g~~v~l~C~~~~-~p~~~~~W~~~~~~~~~-~~~~~l~i~~~~~~d~g~y~C~~~~~~~~ 206 (267)
.+.+|+.++|.|.+.+ .+...+.|++++..+.. .....|.|..+..+|+|.|+|.+.+..+.
T Consensus 10 ~V~~G~~vtL~C~~~~~~~~~~~~w~k~g~~~~~~~~~~~l~I~~~~~~dsG~Y~C~~~~~~~~ 73 (83)
T cd05753 10 VVFEGEPLVLRCHGWKNKPVYKVTYYRDGKAKKYSHSNSNLSIPQATLSDSGSYHCSGIIGSYD 73 (83)
T ss_pred eecCCCCEEEEeeCCCCCcceEEEEEECCeEccccCCCceEEECccCHHHCEEEEEEEEeCCce
Confidence 6888999999999864 45678999999987754 24578999999999999999999998764
No 144
>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=99.24 E-value=8.9e-11 Score=71.97 Aligned_cols=70 Identities=24% Similarity=0.361 Sum_probs=53.2
Q ss_pred CCeEEEEEEecc-----eeeeecccCcceeccccCCceEEEEeeEEEEeecccCCCeeEEEEEEcCCCccEEEEEEEE
Q psy3045 30 GESFALLCEAQE-----NMWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTV 102 (267)
Q Consensus 30 g~~v~l~C~~~~-----~~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~V 102 (267)
|+++.|.|.+.+ +.|++++... ... .........+..|.|.+++..|+|.|+|.|.|..|.....+.|.|
T Consensus 1 g~~~~l~C~a~G~P~P~i~W~k~g~~i--~~~-~~~~~~~~~~~~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v 75 (76)
T cd05868 1 GEDGTLICRANGNPKPSISWLTNGVPI--EIA-PTDPSRKVDGDTIIFSKVQERSSAVYQCNASNEYGYLLANAFVNV 75 (76)
T ss_pred CCCEEEEEEeeEeCCCeEEEEECCEEc--ccc-CCCceEEecCCEEEECCCCHhhCEEEEEEEEcCCCEEEEEEEEEe
Confidence 789999999999 9999963211 110 111122234458999999999999999999999999988888876
No 145
>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.
Probab=99.24 E-value=7.2e-11 Score=73.80 Aligned_cols=75 Identities=31% Similarity=0.399 Sum_probs=54.7
Q ss_pred eEEecCCCeEEEEEEecc-----eeeeecccCcceeccccCCceEEEEeeEEEEeecccCCCeeEEEEEEcCCCccEEEE
Q psy3045 24 RFKKPGGESFALLCEAQE-----NMWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYLCVVNNSVGGESVET 98 (267)
Q Consensus 24 ~~~v~~g~~v~l~C~~~~-----~~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~ 98 (267)
.+.+..|+++.|.|.+.+ +.|++++....... ..........|.|.++..+|+|.|+|.+.|..|.....+
T Consensus 3 ~~~~~~G~~v~L~C~~~g~p~p~i~W~k~~~~~~~~~----~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~ 78 (82)
T cd05856 3 VIARPVGSSVRLKCVASGNPRPDITWLKDNKPLTPTE----IGESRKKKWTLSLKNLKPEDSGKYTCHVSNRAGEINATY 78 (82)
T ss_pred ceeccCCCeEEEEEEeeEeCCCcEEEEECCcCCcCCc----cceecCceEEEEEccCChhhCEEEEEEEEcCCccEEEEE
Confidence 456778999999999987 99999643221110 011112346899999999999999999999999877766
Q ss_pred EEEE
Q psy3045 99 VLTV 102 (267)
Q Consensus 99 ~l~V 102 (267)
.|.|
T Consensus 79 ~v~v 82 (82)
T cd05856 79 KVDV 82 (82)
T ss_pred EEeC
Confidence 6653
No 146
>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.
Probab=99.24 E-value=1.3e-10 Score=72.65 Aligned_cols=67 Identities=22% Similarity=0.451 Sum_probs=51.0
Q ss_pred CCCEEEEeEeCCCCCceEEEEECCccCCC----------C---CCCeEEeccCCCCCCeEEEEEEEcCCC--CceEEEEE
Q psy3045 149 GRPAQFTCKYEGNPVKTISWMKDGKPVPD----------H---NEPVFRIDSVRKEDKGMYQCVIRNEQE--SAQASGEL 213 (267)
Q Consensus 149 g~~v~l~C~~~~~p~~~~~W~~~~~~~~~----------~---~~~~l~i~~~~~~d~g~y~C~~~~~~~--~~~~~~~l 213 (267)
|+++.|.|.+.+.|.+.+.|++.++.... . ..+.|.|.+++.+|+|.|.|.|.+..+ ....+..+
T Consensus 1 Ge~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~~sv~i 80 (84)
T cd05861 1 GETITVNCIVQGNEVVDFSWTYPGKDIGKGIPEVEEVKVPATTLRSTLTFPHATVEDSGTYECAAHESTQDQKAFKKVNI 80 (84)
T ss_pred CCcEEEEEEEECCCccEEEEEECCccCCCCceEEEEEecCCcEEEEEEEECCCCcCCCEEEEEEEEECccCcceeEEEEE
Confidence 68899999999999999999986643211 1 136799999999999999999998765 33344444
Q ss_pred EE
Q psy3045 214 KL 215 (267)
Q Consensus 214 ~v 215 (267)
.|
T Consensus 81 ~V 82 (84)
T cd05861 81 TV 82 (84)
T ss_pred EE
Confidence 43
No 147
>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.
Probab=99.24 E-value=1e-10 Score=73.13 Aligned_cols=72 Identities=26% Similarity=0.378 Sum_probs=50.1
Q ss_pred CCeEEEEEEecc-----eeeeecccCcceeccccCCce----EEEEeeEEEEeecccCCCeeEEEEEEcCCC--ccEEEE
Q psy3045 30 GESFALLCEAQE-----NMWFKFIEGSSRKVAVPLNDR----VKQVSGTLIIKEAKVEDSGKYLCVVNNSVG--GESVET 98 (267)
Q Consensus 30 g~~v~l~C~~~~-----~~W~~~~~~~~~~~~~~~~~~----~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~--~~~~~~ 98 (267)
|++++|.|.+.+ +.|++.+.... .......+ .......|.|.+++.+|+|.|+|.+.+..+ .....+
T Consensus 1 Ge~~~l~C~~~~~~~~~~~W~~~~~~~~--~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~~sv 78 (84)
T cd05861 1 GETITVNCIVQGNEVVDFSWTYPGKDIG--KGIPEVEEVKVPATTLRSTLTFPHATVEDSGTYECAAHESTQDQKAFKKV 78 (84)
T ss_pred CCcEEEEEEEECCCccEEEEEECCccCC--CCceEEEEEecCCcEEEEEEEECCCCcCCCEEEEEEEEECccCcceeEEE
Confidence 789999999987 89997533221 11111011 112356899999999999999999998766 456666
Q ss_pred EEEEE
Q psy3045 99 VLTVT 103 (267)
Q Consensus 99 ~l~V~ 103 (267)
.|+|.
T Consensus 79 ~i~V~ 83 (84)
T cd05861 79 NITVH 83 (84)
T ss_pred EEEEe
Confidence 66664
No 148
>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins. Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin
Probab=99.24 E-value=1.1e-10 Score=73.56 Aligned_cols=70 Identities=30% Similarity=0.628 Sum_probs=57.7
Q ss_pred EEecCCCEEEEeEeCCCCCceEEEEECCccCCCC----------CCCeEEeccCCCCCCeEEEEEEEcCCCCceEEEEEE
Q psy3045 145 TIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDH----------NEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELK 214 (267)
Q Consensus 145 ~~~~g~~v~l~C~~~~~p~~~~~W~~~~~~~~~~----------~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~ 214 (267)
.+..|+.+.|.|.+.+.|.+.+.|++++..+... ....|.|..+..+|.|.|.|.+.|..|....++.|.
T Consensus 5 ~~~~G~~~~l~C~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~g~~~~~~~l~ 84 (85)
T cd05729 5 AVPAGSTVRLKCPASGNPRPTITWLKDGKPFKKEHRIGGYKVRKKKWTLILESVVPSDSGKYTCIVENKYGSINHTYKVD 84 (85)
T ss_pred EecCCCcEEEEEEcCCCCCCeEEEEECCEECcccCceeEEEccCcEEEEEEeECCcccCEEEEEEEEECCceEEEEEEEe
Confidence 5667999999999999999999999998776422 123688889999999999999999988776666554
No 149
>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins. Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=99.23 E-value=1.1e-10 Score=75.39 Aligned_cols=81 Identities=21% Similarity=0.200 Sum_probs=57.8
Q ss_pred CCcccCCCCceeEEecCCCeEEEEEEecc------eeeeecccCcceeccccCCceEEE--------EeeEEEEeecccC
Q psy3045 13 APTFSSVSDIIRFKKPGGESFALLCEAQE------NMWFKFIEGSSRKVAVPLNDRVKQ--------VSGTLIIKEAKVE 78 (267)
Q Consensus 13 ~P~~~~~~~~~~~~v~~g~~v~l~C~~~~------~~W~~~~~~~~~~~~~~~~~~~~~--------~~~~l~i~~~~~~ 78 (267)
||.|.. + ....+.+|+++.|.|.+.+ +.|++++..... ....++.. ..+.|.|.++..+
T Consensus 2 pp~i~~-~--~~~~~~~G~~v~L~C~~~g~P~P~~v~W~~~~~~i~~----~~~~r~~i~~~~~~~~~~s~L~I~~v~~~ 74 (98)
T cd05758 2 PPIITS-E--ATQYAILGDKGRVECFIFSTPPPDRIVWTWKENELES----GSSGRYTVETDPSPGGVLSTLTISNTQES 74 (98)
T ss_pred CCeEcC-C--CcEEEeCCCcEEEEEEEcccCCCCEeEEEECCEEccC----CCCCCEEEEEecCCCceEEEEEECCcccc
Confidence 576754 3 5677899999999999988 899996431111 01122221 1247999999995
Q ss_pred C-CeeEEEEEEcCCCccEEEEEE
Q psy3045 79 D-SGKYLCVVNNSVGGESVETVL 100 (267)
Q Consensus 79 d-~G~Y~C~~~~~~~~~~~~~~l 100 (267)
| .|.|+|.|.|..|.....+.|
T Consensus 75 d~~G~Y~C~A~N~~G~~~~~~~L 97 (98)
T cd05758 75 DFQTSYNCTAWNSFGSGTAIISL 97 (98)
T ss_pred ccceeEEEEEEcCCCcccEEEEe
Confidence 5 899999999999987766654
No 150
>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2). Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.
Probab=99.23 E-value=1e-10 Score=74.39 Aligned_cols=73 Identities=27% Similarity=0.492 Sum_probs=51.1
Q ss_pred CCeEEEEEEecc-----eeeeeccc--Ccceecccc------CCceEE---EEeeEEEEeecccCCCeeEEEEEEcCCCc
Q psy3045 30 GESFALLCEAQE-----NMWFKFIE--GSSRKVAVP------LNDRVK---QVSGTLIIKEAKVEDSGKYLCVVNNSVGG 93 (267)
Q Consensus 30 g~~v~l~C~~~~-----~~W~~~~~--~~~~~~~~~------~~~~~~---~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~ 93 (267)
|+++.|.|.+.+ +.|+++.. +........ ...... .....|.|.+++.+|+|.|+|.|.|..|.
T Consensus 1 G~~v~L~C~~~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~ 80 (90)
T cd05858 1 GSTVEFVCKVYSDAQPHIQWLKHVEKNGSKYGPDGLPYVTVLKTAGVNTTDKEMEVLYLRNVTFEDAGEYTCLAGNSIGI 80 (90)
T ss_pred CCeEEEEEEEecCCCCEEEEEEecccCCcEeCCCCCeeEEEeccCCceecCCceeEEEEccCCHHHCEEEEEEEEeCCCc
Confidence 789999999988 99998531 111000000 000000 11257999999999999999999999999
Q ss_pred cEEEEEEEE
Q psy3045 94 ESVETVLTV 102 (267)
Q Consensus 94 ~~~~~~l~V 102 (267)
......|.|
T Consensus 81 ~~~~a~L~V 89 (90)
T cd05858 81 SHHSAWLTV 89 (90)
T ss_pred ccceEEEEE
Confidence 888888876
No 151
>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.
Probab=99.23 E-value=7.5e-11 Score=72.40 Aligned_cols=59 Identities=31% Similarity=0.555 Sum_probs=46.2
Q ss_pred EEEEeEeCCCCCceEEEEECCccCCC---------CCCCeEEeccCC----CCCCeEEEEEEEcCCCCceEE
Q psy3045 152 AQFTCKYEGNPVKTISWMKDGKPVPD---------HNEPVFRIDSVR----KEDKGMYQCVIRNEQESAQAS 210 (267)
Q Consensus 152 v~l~C~~~~~p~~~~~W~~~~~~~~~---------~~~~~l~i~~~~----~~d~g~y~C~~~~~~~~~~~~ 210 (267)
+.|.|.+.|.|.|.++|+|++..+.. .....|.|..+. .+|+|.|+|.|.|..|...+.
T Consensus 1 ~~l~C~~~G~P~P~v~W~k~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~ 72 (77)
T cd05875 1 IIIECEAKGNPVPTFQWTRNGKFFNVAKDPRVSMRRRSGTLVIDFSGGGRPEDYEGEYQCFARNNLGTALSN 72 (77)
T ss_pred CEEEEeccccCCCEEEEEECCEEccCcCCCcEEEeCCCceEEEeccCCCCCCCCCEEEEEEEEeccceEEEE
Confidence 46899999999999999999986521 134678887653 246999999999999876543
No 152
>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=99.23 E-value=7.9e-11 Score=72.92 Aligned_cols=57 Identities=28% Similarity=0.519 Sum_probs=46.0
Q ss_pred EEEEeEeCCCCCceEEEEECCccC-C--------C-----CCCCeEEeccCCCCCCeEEEEEEEcCCCCce
Q psy3045 152 AQFTCKYEGNPVKTISWMKDGKPV-P--------D-----HNEPVFRIDSVRKEDKGMYQCVIRNEQESAQ 208 (267)
Q Consensus 152 v~l~C~~~~~p~~~~~W~~~~~~~-~--------~-----~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~ 208 (267)
++|.|.+.|.|.|.+.|++++... . . .....|.|.++..+|+|.|.|.|.|..|...
T Consensus 1 v~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~~~~~r~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~ 71 (79)
T cd05734 1 VTLNCSAEGYPPPTIVWKHSKGRGHPQHTHTCCLAGRIQLLSNGSLLIKHVLEEDSGYYLCKVSNDVGADA 71 (79)
T ss_pred CEeEeeCeEeCCCEEEEEECCCccccccccccccCCCEEEecCCeEEECcCCcccCEEEEEEEEeCCCCCC
Confidence 478999999999999999964321 0 0 1346899999999999999999999988763
No 153
>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=99.22 E-value=1e-10 Score=75.21 Aligned_cols=76 Identities=28% Similarity=0.340 Sum_probs=53.1
Q ss_pred eeEEecCCCeEEEEEEecc-----eeeeecccCcceeccccCCc-eEEEEeeEEEEeec-----ccCCCeeEEEEEEcC-
Q psy3045 23 IRFKKPGGESFALLCEAQE-----NMWFKFIEGSSRKVAVPLND-RVKQVSGTLIIKEA-----KVEDSGKYLCVVNNS- 90 (267)
Q Consensus 23 ~~~~v~~g~~v~l~C~~~~-----~~W~~~~~~~~~~~~~~~~~-~~~~~~~~l~i~~~-----~~~d~G~Y~C~~~~~- 90 (267)
.+..+.+|+++.|.|.+.+ +.|+|++..... .... .....+++|.|.++ ...|.|.|+|.+.|.
T Consensus 7 ~~~~~~~g~~v~l~C~v~g~P~p~i~W~k~g~~l~~----~~~~~~~~~~~~~l~i~~v~~~~~~~~D~G~Y~C~a~N~~ 82 (95)
T cd05722 7 SDIVAVRGGPVVLNCSAEGEPPPKIEWKKDGVLLNL----VSDERRQQLPNGSLLITSVVHSKHNKPDEGFYQCVAQNDS 82 (95)
T ss_pred CCeEEcCCCCEEEeeecccCCCCEEEEEECCeECcc----ccCcceEEccCCeEEEeeeeccCCCCCcCEEEEEEEECCc
Confidence 6778889999999999988 999996432111 1111 12223456777666 588999999999999
Q ss_pred CCcc-EEEEEEEE
Q psy3045 91 VGGE-SVETVLTV 102 (267)
Q Consensus 91 ~~~~-~~~~~l~V 102 (267)
.|.. +..+.|.|
T Consensus 83 ~G~~~s~~~~l~v 95 (95)
T cd05722 83 LGSIVSRTARLTV 95 (95)
T ss_pred cCcEEEeeeEEeC
Confidence 8874 55666553
No 154
>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=99.22 E-value=1.1e-10 Score=70.61 Aligned_cols=65 Identities=23% Similarity=0.325 Sum_probs=49.4
Q ss_pred eEEEEEEecc-----eeeeecccCcceeccccCCceEE-EEeeEEEEeecccCCCeeEEEEEEcCCCccEEEEEEEE
Q psy3045 32 SFALLCEAQE-----NMWFKFIEGSSRKVAVPLNDRVK-QVSGTLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTV 102 (267)
Q Consensus 32 ~v~l~C~~~~-----~~W~~~~~~~~~~~~~~~~~~~~-~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~V 102 (267)
++.|.|.+.| +.|++++... ....++. ..+..|.|.++..+|+|.|+|.|.|..|.....+.|.|
T Consensus 1 ~v~l~C~~~G~P~p~v~W~k~g~~~------~~~~~~~~~~~~~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~L~V 71 (71)
T cd05723 1 DVIFECEVTGKPTPTVKWVKNGDMV------IPSDYFKIVKEHNLQVLGLVKSDEGFYQCIAENDVGNVQASAQLII 71 (71)
T ss_pred CEEEEEEEEEeCCCEEEEEECCeEC------CCCCCEEEEecCCEEEEcCCcccCEEEEEEEEcCCCEEEEEEEEEC
Confidence 4789999998 9999963311 1122333 24457889999999999999999999999888777754
No 155
>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.
Probab=99.22 E-value=3.2e-10 Score=72.30 Aligned_cols=74 Identities=20% Similarity=0.297 Sum_probs=58.6
Q ss_pred CCceEEEecCCCEEEEeEeCCCCCc-eEEEEECCccCCCC---------------CCCeEEeccCCCCC-CeEEEEEEEc
Q psy3045 140 EPTVQTIDFGRPAQFTCKYEGNPVK-TISWMKDGKPVPDH---------------NEPVFRIDSVRKED-KGMYQCVIRN 202 (267)
Q Consensus 140 ~~~~~~~~~g~~v~l~C~~~~~p~~-~~~W~~~~~~~~~~---------------~~~~l~i~~~~~~d-~g~y~C~~~~ 202 (267)
....+.+.+|+.+.|.|.+.+.|+| .+.|.+++..+... ..+.|.|.++...| .|.|.|.|.|
T Consensus 7 ~~~s~~~~~G~~~~L~C~~~s~P~P~~i~W~w~~~~i~~~~~~r~~I~~~~~~~g~~S~L~I~~~~~~d~~g~Y~C~a~N 86 (98)
T cd05898 7 SEQVQYAVRGERGKVKCFIGSTPPPDRIAWAWKENVLESGTSERYTVERTSTGSGVLSTLTINNIMEADFQTHYNCTAWN 86 (98)
T ss_pred cCceEEEeCCCcEEEEEEEccCCCCcEEEEEEccccccCCCCCCEEEEEEccCCCcEEEEEECCCccccCCcEEEEEEEe
Confidence 3455588899999999999888765 78898877665432 34679999998777 7999999999
Q ss_pred CCCCceEEEEE
Q psy3045 203 EQESAQASGEL 213 (267)
Q Consensus 203 ~~~~~~~~~~l 213 (267)
..|.....++|
T Consensus 87 ~~G~d~~~i~L 97 (98)
T cd05898 87 SFGSGTAIIQL 97 (98)
T ss_pred CCccceEEEEe
Confidence 99988776654
No 156
>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin. Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.
Probab=99.22 E-value=2.2e-10 Score=72.65 Aligned_cols=73 Identities=23% Similarity=0.405 Sum_probs=55.8
Q ss_pred ceEEEecCCCEEEEeEeCCCCCceEEEEECCccCCCC---------CCCeEEeccCCCCCCeEEEEEEEcCCC-CceEEE
Q psy3045 142 TVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDH---------NEPVFRIDSVRKEDKGMYQCVIRNEQE-SAQASG 211 (267)
Q Consensus 142 ~~~~~~~g~~v~l~C~~~~~p~~~~~W~~~~~~~~~~---------~~~~l~i~~~~~~d~g~y~C~~~~~~~-~~~~~~ 211 (267)
....+.+|+.+.|.|.+.+ |.+.+.|++++..+... ....|.|.++..+|+|.|.|.+.+..+ ....+.
T Consensus 4 ~~~~v~~g~~v~L~C~~~~-p~~~i~W~k~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~~~~~~~~~~~~ 82 (89)
T cd04979 4 KVVTVVEGNSVFLECSPKS-NLASVVWLFQGGPLQRKEEPEERLLVTEDGLLIRSVSPADAGVYTCQSVEHGFKQTLATY 82 (89)
T ss_pred eEEEEECCCcEEEEEeCCC-CCceEEEEECCcccccccCcCceEEEcCCCEEEccCCHHHCEEEEEEEecCccceeEeEE
Confidence 3447888999999999876 77899999998766432 124689999999999999999987653 333345
Q ss_pred EEEE
Q psy3045 212 ELKL 215 (267)
Q Consensus 212 ~l~v 215 (267)
.+.|
T Consensus 83 ~l~V 86 (89)
T cd04979 83 SLNV 86 (89)
T ss_pred EEEE
Confidence 5554
No 157
>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=99.21 E-value=8.3e-11 Score=71.14 Aligned_cols=65 Identities=25% Similarity=0.351 Sum_probs=49.4
Q ss_pred EEEEEEecc-----eeeeecccCcceeccccCCceEEEEeeEEEEeecccCCCeeEEEEEEcCCCccEEEEEEEE
Q psy3045 33 FALLCEAQE-----NMWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTV 102 (267)
Q Consensus 33 v~l~C~~~~-----~~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~V 102 (267)
+.|.|.+.| +.|++++..... ........+.+|.|.++..+|+|.|+|.|.|..|..+..+.|.|
T Consensus 1 ~~L~C~~~G~P~P~v~W~k~~~~~~~-----~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 70 (71)
T cd05876 1 LVLECIAEGLPTPEVHWDRIDGPLSP-----NRTKKLNNNKTLQLDNVLESDDGEYVCTAENSEGSARHHYTVTV 70 (71)
T ss_pred CEEEEEeeEecCCeEEEEECCcCCCC-----CceeEEcCCCEEEEcccCHHhCEEEEEEEEcCCCeEEEEEEEEE
Confidence 479999999 999996432211 11122234568999999999999999999999999888777765
No 158
>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily. Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.21 E-value=1.6e-10 Score=70.63 Aligned_cols=68 Identities=25% Similarity=0.439 Sum_probs=50.7
Q ss_pred CCeEEEEEEecc-----eeeeecccCcceeccccCCceE-EEEeeEEEEeecccCCCeeEEEEEEcCCCccEEEEEEEE
Q psy3045 30 GESFALLCEAQE-----NMWFKFIEGSSRKVAVPLNDRV-KQVSGTLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTV 102 (267)
Q Consensus 30 g~~v~l~C~~~~-----~~W~~~~~~~~~~~~~~~~~~~-~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~V 102 (267)
|+++.|.|.+.+ +.|++.++ .. +....+. ...+++|.|..+..+|.|.|+|.+.|..|..+..+.|.|
T Consensus 1 G~~~~l~C~~~g~P~p~v~W~~~~~-~~----~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~v 74 (74)
T cd05764 1 GQRATLRCKARGDPEPAIHWISPDG-KL----ISNSSRTLVYDNGTLDILITTVKDTGSFTCIASNAAGEATATVELHI 74 (74)
T ss_pred CCeEEEEEEccCcCCCEEEEEeCCC-EE----ecCCCeEEEecCCEEEEEECChhhCEEEEEEEECCCCeEEEEEEEEC
Confidence 789999999988 99997422 11 1111222 234568999999999999999999999998877776654
No 159
>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin. Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).
Probab=99.20 E-value=4.9e-11 Score=72.88 Aligned_cols=65 Identities=29% Similarity=0.329 Sum_probs=48.3
Q ss_pred EEEEEEecc-----eeeeecccCcceeccccCCceEEE--E---eeEEEEeecccCCCeeEEEEEEcCCCccEEEEEEEE
Q psy3045 33 FALLCEAQE-----NMWFKFIEGSSRKVAVPLNDRVKQ--V---SGTLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTV 102 (267)
Q Consensus 33 v~l~C~~~~-----~~W~~~~~~~~~~~~~~~~~~~~~--~---~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~V 102 (267)
+.|.|.+.+ +.|++++.... . ...++.. . ..+|.|.+++.+|+|.|+|.+.|..|.......|.|
T Consensus 1 v~L~C~v~G~P~P~v~W~k~~~~i~--~---~~~r~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~v 75 (75)
T cd05744 1 VRLECRVSAIPPPQIFWKKNNEMLT--Y---NTDRISLYQDNCGRICLLIQNANKEDAGWYTVSAVNEAGVVSCNARLDV 75 (75)
T ss_pred CEEEEEEeecCCCeEEEEECCEECC--C---CCCcEEEEEcCCCeEEEEECCCCcccCEEEEEEEEcCCCcEEEEEEEeC
Confidence 579999998 99999643211 0 1223322 1 126999999999999999999999999888877764
No 160
>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=99.20 E-value=1.2e-10 Score=70.15 Aligned_cols=63 Identities=29% Similarity=0.448 Sum_probs=48.4
Q ss_pred EEEEEEecc-----eeeeecccCcceeccccCCceEE-EEeeEEEEeecccCCCeeEEEEEEcCCCccEEEEEEEE
Q psy3045 33 FALLCEAQE-----NMWFKFIEGSSRKVAVPLNDRVK-QVSGTLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTV 102 (267)
Q Consensus 33 v~l~C~~~~-----~~W~~~~~~~~~~~~~~~~~~~~-~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~V 102 (267)
++|.|.+.+ +.|++++... . ..+.. ..+.+|.|.+++.+|+|.|+|.+.|..|.......|.|
T Consensus 1 v~l~C~~~g~P~p~v~W~k~~~~~------~-~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 69 (69)
T cd05725 1 VEFQCEVGGDPVPTVLWRKEDGEL------P-KGRAEILDDKSLKIRNVTAGDEGSYTCEAENMVGKIEASASLTV 69 (69)
T ss_pred CEEEEECccCCCCEEEEEECCccC------C-CCcEEEeeCCEEEECcCChhHCEEEEEEEEcCCCcEEEEEEEEC
Confidence 579999988 9999963211 1 12222 24568999999999999999999999998887777654
No 161
>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.
Probab=99.20 E-value=3.2e-10 Score=72.30 Aligned_cols=81 Identities=23% Similarity=0.191 Sum_probs=58.6
Q ss_pred CCcccCCCCceeEEecCCCeEEEEEEecc------eeeeecccCcceeccccCCceEEE--------EeeEEEEeecccC
Q psy3045 13 APTFSSVSDIIRFKKPGGESFALLCEAQE------NMWFKFIEGSSRKVAVPLNDRVKQ--------VSGTLIIKEAKVE 78 (267)
Q Consensus 13 ~P~~~~~~~~~~~~v~~g~~v~l~C~~~~------~~W~~~~~~~~~~~~~~~~~~~~~--------~~~~l~i~~~~~~ 78 (267)
||.|... ....+.+|+++.|.|.+.+ +.|....+.... ....++.. ..+.|.|.++...
T Consensus 2 pP~i~~~---~s~~~~~G~~~~L~C~~~s~P~P~~i~W~w~~~~i~~----~~~~r~~I~~~~~~~g~~S~L~I~~~~~~ 74 (98)
T cd05898 2 PPIISSE---QVQYAVRGERGKVKCFIGSTPPPDRIAWAWKENVLES----GTSERYTVERTSTGSGVLSTLTINNIMEA 74 (98)
T ss_pred CCEEecC---ceEEEeCCCcEEEEEEEccCCCCcEEEEEEccccccC----CCCCCEEEEEEccCCCcEEEEEECCCccc
Confidence 6767433 6889999999999999966 788775332111 11223321 3468999999887
Q ss_pred C-CeeEEEEEEcCCCccEEEEEE
Q psy3045 79 D-SGKYLCVVNNSVGGESVETVL 100 (267)
Q Consensus 79 d-~G~Y~C~~~~~~~~~~~~~~l 100 (267)
| .|.|.|.|.|..|.+...+.|
T Consensus 75 d~~g~Y~C~a~N~~G~d~~~i~L 97 (98)
T cd05898 75 DFQTHYNCTAWNSFGSGTAIIQL 97 (98)
T ss_pred cCCcEEEEEEEeCCccceEEEEe
Confidence 7 799999999999998777665
No 162
>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins. Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-
Probab=99.19 E-value=1e-10 Score=71.46 Aligned_cols=65 Identities=32% Similarity=0.372 Sum_probs=49.7
Q ss_pred eEEEEEEecc-----eeeeecccCcceeccccCCceEEE----EeeEEEEeecccCCCeeEEEEEEcCCCccEEEEEEEE
Q psy3045 32 SFALLCEAQE-----NMWFKFIEGSSRKVAVPLNDRVKQ----VSGTLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTV 102 (267)
Q Consensus 32 ~v~l~C~~~~-----~~W~~~~~~~~~~~~~~~~~~~~~----~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~V 102 (267)
.+.|.|.+.+ +.|++++... ....++.. ....|.|.++...|+|.|+|.+.|..|..+..+.|.|
T Consensus 1 ~~~l~c~~~G~P~p~v~W~k~g~~l------~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V 74 (74)
T cd05748 1 SVRLEVPISGRPTPTVTWSKDGKPL------KLSGRVQIETTASSTSLVIKNAERSDSGKYTLTLKNPAGEKSATINVKV 74 (74)
T ss_pred CEEEEeeEeeeCCCeEEEEECCEEc------CCCCeEEEEECCCeEEEEECCCCcCcCEEEEEEEECCCccEEEEEEEEC
Confidence 4789999999 9999964321 12223322 2468999999999999999999999999888777654
No 163
>cd04967 Ig1_Contactin First Ig domain of contactin. Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata
Probab=99.19 E-value=2.3e-10 Score=72.92 Aligned_cols=60 Identities=23% Similarity=0.483 Sum_probs=49.2
Q ss_pred CCCEEEEeEeCCCCCceEEEEECCccCCCC-------CCCeEEeccCC-CCCCeEEEEEEEcCCCCce
Q psy3045 149 GRPAQFTCKYEGNPVKTISWMKDGKPVPDH-------NEPVFRIDSVR-KEDKGMYQCVIRNEQESAQ 208 (267)
Q Consensus 149 g~~v~l~C~~~~~p~~~~~W~~~~~~~~~~-------~~~~l~i~~~~-~~d~g~y~C~~~~~~~~~~ 208 (267)
|..+.|.|.+.|.|.+.++|++++..+... ....|.|.++. .+|+|.|+|.|.|..|...
T Consensus 19 ~~~~~l~C~~~g~p~p~i~W~k~~~~l~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~N~~G~~~ 86 (91)
T cd04967 19 EGKVSLNCRARGSPPPTYRWLMNGTEIDDEPDSRYSLVGGNLVISNPSKAKDAGRYQCLASNIVGTVL 86 (91)
T ss_pred CCEEEEEEeeeEcCCCEEEEEECCEECCCCCCCCEEEECCEEEEecCCccCCCEEEEEEEEcCCCEEE
Confidence 467999999999999999999999887422 13578887776 4899999999999988654
No 164
>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins. Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.
Probab=99.19 E-value=1.3e-10 Score=73.05 Aligned_cols=70 Identities=21% Similarity=0.481 Sum_probs=54.8
Q ss_pred eeEEecCCCeEEEEEEecc------eeeeecccCcceeccccCCceEEEEeeEEEEeecccCCCeeEEEEEEcCCCccEE
Q psy3045 23 IRFKKPGGESFALLCEAQE------NMWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYLCVVNNSVGGESV 96 (267)
Q Consensus 23 ~~~~v~~g~~v~l~C~~~~------~~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~ 96 (267)
....+.+|++++|.|.+.+ +.|++++.+. ..+....++.|.|.+++.+|+|.|+|.+.|..|....
T Consensus 9 ~~~~v~~G~~v~L~C~~~~~~~~~~i~W~~~~~~~--------~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~~g~~~~ 80 (85)
T cd05754 9 RSQEVRPGADVSFICRAKSKSPAYTLVWTRVGGGL--------PSRAMDFNGILTIRNVQLSDAGTYVCTGSNMLDTDEA 80 (85)
T ss_pred CceEEcCCCCEEEEEEcCCCCCCcEEEEEECCCcC--------CCcccccCCEEEECCCCHHHCEEEEEEEeccCCeEeE
Confidence 6788999999999999853 9999964331 1122233568999999999999999999999988776
Q ss_pred EEEE
Q psy3045 97 ETVL 100 (267)
Q Consensus 97 ~~~l 100 (267)
.+.|
T Consensus 81 ~~~l 84 (85)
T cd05754 81 TATL 84 (85)
T ss_pred EEEE
Confidence 6554
No 165
>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1
Probab=99.19 E-value=1.9e-10 Score=72.87 Aligned_cols=71 Identities=20% Similarity=0.345 Sum_probs=56.9
Q ss_pred EEecCCCEEEEeEeCC-----CCCceEEEEECCccCCCC-----CCCeEEeccCCCCCCeEEEEEEEcCCCCceEEEEEE
Q psy3045 145 TIDFGRPAQFTCKYEG-----NPVKTISWMKDGKPVPDH-----NEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELK 214 (267)
Q Consensus 145 ~~~~g~~v~l~C~~~~-----~p~~~~~W~~~~~~~~~~-----~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~ 214 (267)
.+..|....|.|...+ .|.+.+.|+|++.++... ....|.|.++..+|+|.|+|.+.+..+.........
T Consensus 6 ~~~~g~~~~l~Cp~~~~~~~~~~~p~i~Wyk~~~~i~~~~~~~~~~~~L~I~~v~~~DsG~YtC~~~n~~~~~~~~~t~t 85 (92)
T cd05757 6 ILFSTKGGKIVCPDLDDFKNENTLPPVQWYKDCKLLEGDRKRFVKGSKLLIQNVTEEDAGNYTCKLTFTHNGKQYNVTRT 85 (92)
T ss_pred EEeeccCCEEECCChHHccCCCCCCcEEEeECCEECCCCccEEecCCEEEEeeCChhhCEEEEEEEEecCCCEEEEEEEE
Confidence 6778999999998643 257799999999988654 357899999999999999999999877665554444
Q ss_pred E
Q psy3045 215 L 215 (267)
Q Consensus 215 v 215 (267)
+
T Consensus 86 ~ 86 (92)
T cd05757 86 I 86 (92)
T ss_pred E
Confidence 3
No 166
>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format
Probab=99.19 E-value=2.6e-10 Score=72.73 Aligned_cols=77 Identities=16% Similarity=0.273 Sum_probs=52.5
Q ss_pred eeEEecCCCeEEEEEEecc-----eeeeecccCcce--eccccCCceEEEE-----eeEEEEeecccCCCeeEEEEEEcC
Q psy3045 23 IRFKKPGGESFALLCEAQE-----NMWFKFIEGSSR--KVAVPLNDRVKQV-----SGTLIIKEAKVEDSGKYLCVVNNS 90 (267)
Q Consensus 23 ~~~~v~~g~~v~l~C~~~~-----~~W~~~~~~~~~--~~~~~~~~~~~~~-----~~~l~i~~~~~~d~G~Y~C~~~~~ 90 (267)
.+..+.+|+++.|.|.+.+ +.|++++..... ........|+... ..+|.|.++..+|+|.|+|.+...
T Consensus 5 ~~~tv~~G~tv~L~C~v~g~~~~~v~W~k~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~nV~~~D~G~YtC~~~t~ 84 (95)
T cd05882 5 QDETVAVGGTVTLKCGVKEHDNSSLQWSNTAQQTLYFGEKRALRDNRIQLVKSTPTELIISISNVQLSDEGEYTCSIFTM 84 (95)
T ss_pred ccEEEecCCcEEEEEEEeCCCCCeEEEeccCccEEEeCCeEEEeCCeEEEEeCCCceEEEEECCCCcccCEEEEEEEEee
Confidence 6789999999999999999 999986321100 0011122344322 468999999999999999999873
Q ss_pred CCccEEEEEE
Q psy3045 91 VGGESVETVL 100 (267)
Q Consensus 91 ~~~~~~~~~l 100 (267)
. .......|
T Consensus 85 ~-~~~~~~~~ 93 (95)
T cd05882 85 P-VRTAKATV 93 (95)
T ss_pred c-cccEEEEE
Confidence 2 33444444
No 167
>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.
Probab=99.18 E-value=1.1e-10 Score=72.00 Aligned_cols=66 Identities=29% Similarity=0.313 Sum_probs=48.3
Q ss_pred CCeEEEEEEecc-----eeeeecccCcceeccccCCceEE----EEeeEEEEeecccCCCeeEEEEEEcCCCccEEEEEE
Q psy3045 30 GESFALLCEAQE-----NMWFKFIEGSSRKVAVPLNDRVK----QVSGTLIIKEAKVEDSGKYLCVVNNSVGGESVETVL 100 (267)
Q Consensus 30 g~~v~l~C~~~~-----~~W~~~~~~~~~~~~~~~~~~~~----~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l 100 (267)
|+++.|.|.+.+ +.|++++... ....++. .....|.|.++..+|+|.|+|.+.|..|.......+
T Consensus 1 G~~v~l~C~~~g~P~p~v~W~~~~~~~------~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~~ 74 (78)
T cd05743 1 GETVEFTCVATGVPTPIINWRLNWGHV------PDSARVSITSEGGYGTLTIRDVKESDQGAYTCEAINTRGMVFGIPDG 74 (78)
T ss_pred CCEEEEEEEEEEecCCEEEEEECCeEC------CCCCCEEEEECCCEEEEEECCCChHHCEEEEEEEEecCCEEEecccE
Confidence 789999999988 9999863211 1122222 123689999999999999999999999876554443
Q ss_pred E
Q psy3045 101 T 101 (267)
Q Consensus 101 ~ 101 (267)
.
T Consensus 75 ~ 75 (78)
T cd05743 75 I 75 (78)
T ss_pred E
Confidence 3
No 168
>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format
Probab=99.18 E-value=3.4e-10 Score=72.19 Aligned_cols=61 Identities=21% Similarity=0.476 Sum_probs=50.2
Q ss_pred ceEEEecCCCEEEEeEeCCCCCceEEEEECCccC---------CC---------CCCCeEEeccCCCCCCeEEEEEEEc
Q psy3045 142 TVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPV---------PD---------HNEPVFRIDSVRKEDKGMYQCVIRN 202 (267)
Q Consensus 142 ~~~~~~~g~~v~l~C~~~~~p~~~~~W~~~~~~~---------~~---------~~~~~l~i~~~~~~d~g~y~C~~~~ 202 (267)
.+..+.+|+++.|.|.+.+.|.+.+.|++++..+ .. .....|.|.++..+|+|.|+|.+..
T Consensus 5 ~~~tv~~G~tv~L~C~v~g~~~~~v~W~k~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~nV~~~D~G~YtC~~~t 83 (95)
T cd05882 5 QDETVAVGGTVTLKCGVKEHDNSSLQWSNTAQQTLYFGEKRALRDNRIQLVKSTPTELIISISNVQLSDEGEYTCSIFT 83 (95)
T ss_pred ccEEEecCCcEEEEEEEeCCCCCeEEEeccCccEEEeCCeEEEeCCeEEEEeCCCceEEEEECCCCcccCEEEEEEEEe
Confidence 4458889999999999999999999998876532 00 1236899999999999999999987
No 169
>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).
Probab=99.17 E-value=2.2e-10 Score=68.70 Aligned_cols=63 Identities=25% Similarity=0.339 Sum_probs=46.4
Q ss_pred CCeEEEEEEecc-----eeeeecccCcceeccccCCceEEEEeeEEEEeecccCCCeeEEEEEEcCCCccEEEEEE
Q psy3045 30 GESFALLCEAQE-----NMWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYLCVVNNSVGGESVETVL 100 (267)
Q Consensus 30 g~~v~l~C~~~~-----~~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l 100 (267)
|++++|.|.+.+ +.|++++.. +....++......|.|.++ .|+|.|+|.|.|..|.....+.|
T Consensus 1 G~~v~L~C~a~G~P~P~v~W~k~g~~------l~~~~~~~~~~~~L~i~~~--~d~G~Y~C~A~N~~G~~~~~a~l 68 (69)
T cd05739 1 GGSVNLTCVAVGAPMPYVKWMKGGEE------LTKEDEMPVGRNVLELTNI--YESANYTCVAISSLGMIEATAQV 68 (69)
T ss_pred CCeEEEEEEeeecCCCEEEEEECCEE------CCCccceecCccEEEEecc--ccCeeEEEEEEeCCCEEEEEEEE
Confidence 789999999999 999996321 1122233334457888886 47999999999999987666554
No 170
>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs). Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c
Probab=99.17 E-value=1.5e-10 Score=71.47 Aligned_cols=67 Identities=16% Similarity=0.291 Sum_probs=49.3
Q ss_pred ccCCCCceeEEecCCCeEEEEEEecc------eeeeecccCcceeccccCCceEEEEeeEEEEeecccCCCeeEEEEEEc
Q psy3045 16 FSSVSDIIRFKKPGGESFALLCEAQE------NMWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYLCVVNN 89 (267)
Q Consensus 16 ~~~~~~~~~~~v~~g~~v~l~C~~~~------~~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~ 89 (267)
|...| .++.+.+|+++.|.|.+.| +.|++++.... . +.....+.|.|..+ .|+|.|.|.|.|
T Consensus 1 f~~~P--~~~~v~~G~~v~l~C~a~G~P~P~~I~W~k~g~~l~--~------~~~~~~s~L~i~~~--~d~g~Y~C~A~N 68 (81)
T cd05749 1 FTVEP--EDLSVTANTPFNLTCQAVGPPEPVEILWWQGGSPLG--D------PPAPSPSVLNVPGL--NETSKFSCEAHN 68 (81)
T ss_pred CcCCC--CceEEcCCCCEEEEEEeeeecCCeEEEEEECCEECC--C------CCCCCCCEEEEccc--cCCeEEEEEEEe
Confidence 34455 6889999999999999999 89999633111 1 11123357888776 578999999999
Q ss_pred CCCcc
Q psy3045 90 SVGGE 94 (267)
Q Consensus 90 ~~~~~ 94 (267)
..|..
T Consensus 69 ~~G~~ 73 (81)
T cd05749 69 AKGVT 73 (81)
T ss_pred ccCcE
Confidence 99864
No 171
>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily. Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.17 E-value=2.4e-10 Score=70.03 Aligned_cols=67 Identities=28% Similarity=0.415 Sum_probs=49.4
Q ss_pred EEEEEEecc-----eeeeecccCcceeccccCCceEEE--EeeEEEEeecccCCCeeEEEEEEcCCCccEEEEEEEE
Q psy3045 33 FALLCEAQE-----NMWFKFIEGSSRKVAVPLNDRVKQ--VSGTLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTV 102 (267)
Q Consensus 33 v~l~C~~~~-----~~W~~~~~~~~~~~~~~~~~~~~~--~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~V 102 (267)
++|.|.+.+ +.|++++.... ......++.. .+..|.|.++..+|+|.|+|.+.|..|.....+.|.|
T Consensus 1 a~l~C~~~G~P~P~v~W~k~~~~~~---~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~~~l~V 74 (75)
T cd05763 1 ARLECAATGHPTPQIAWQKDGGTDF---PAARERRMHVMPEDDVFFIVDVKIEDTGVYSCTAQNTAGSISANATLTV 74 (75)
T ss_pred CEeEeecccccCCEEEEEeCCCccC---CcccccceEEecCCCEEEEeeCCcccCEEEEEEEEcCCCEEEeeEEEEE
Confidence 479999988 99999643211 1111223322 3458999999999999999999999998888888776
No 172
>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins. Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF
Probab=99.16 E-value=3.1e-10 Score=71.13 Aligned_cols=73 Identities=23% Similarity=0.373 Sum_probs=51.4
Q ss_pred CCeEEEEEEecc-------eeeeecccCcceeccc---cCCceEEEEeeEEEEeecccCCCeeEEEEEEcCCCccEEEEE
Q psy3045 30 GESFALLCEAQE-------NMWFKFIEGSSRKVAV---PLNDRVKQVSGTLIIKEAKVEDSGKYLCVVNNSVGGESVETV 99 (267)
Q Consensus 30 g~~v~l~C~~~~-------~~W~~~~~~~~~~~~~---~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~ 99 (267)
|+++.|.|.+.+ +.|.+++......... ..........+.|.|.+++.+|+|.|+|.+.|..+..+....
T Consensus 1 Ge~~~L~C~~~g~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~DsG~Y~C~a~n~~~~~~~s~~ 80 (84)
T cd05742 1 GETLVLNCTVLTELNEGVDFQWTYPGKKRGRGKSMVTRQSLSEATELSSTLTIPNATLKDSGTYTCAASSGTMDQKESTK 80 (84)
T ss_pred CCeEEEEEEEEeCCCccEEEEEecCCcccCCceEeecccccccceEEEEEEEECCCChhhCEEEEEEEccCCCceEEEEE
Confidence 789999999987 8998753322111000 000111124568999999999999999999999988887777
Q ss_pred EEE
Q psy3045 100 LTV 102 (267)
Q Consensus 100 l~V 102 (267)
|.|
T Consensus 81 v~v 83 (84)
T cd05742 81 VNI 83 (84)
T ss_pred EEE
Confidence 765
No 173
>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D. Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas
Probab=99.16 E-value=4.2e-10 Score=70.15 Aligned_cols=63 Identities=19% Similarity=0.251 Sum_probs=50.5
Q ss_pred eeEEecCCCeEEEEEEecc----eeeeecccCcceeccccCCceEEEEeeEEEEeecccCCCeeEEEEEEcC
Q psy3045 23 IRFKKPGGESFALLCEAQE----NMWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYLCVVNNS 90 (267)
Q Consensus 23 ~~~~v~~g~~v~l~C~~~~----~~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~ 90 (267)
.+..+..|+++.|.|.+.+ +.|++++.... ....++...++.|.|.+++.+|+|.|+|.+...
T Consensus 4 ~~~~v~~G~~v~L~C~~~~~~~~i~W~~ng~~i~-----~~~~r~~~~~~~L~I~nv~~~DsG~Y~C~a~e~ 70 (87)
T cd05873 4 RQRTFKLGNNAELKCSPKSNLARVVWKFDGKVLT-----PESAKYLLYRDGLLIFNASEADAGRYQCLSVEK 70 (87)
T ss_pred ceEEEECCCCEEEEEECCCCCCeEEEEECCEECC-----CCCceEEEECCcEEEeCCCHHHCEEEEEEEEec
Confidence 6889999999999999876 99999643211 112456667778999999999999999999865
No 174
>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=99.16 E-value=6.7e-11 Score=73.71 Aligned_cols=69 Identities=20% Similarity=0.231 Sum_probs=50.8
Q ss_pred eeEEecCCCeEEEEEEecc------eeeeecccCcceeccccCCceEEEEeeEEEEeecccCCCeeEEEEEEcCCCc-cE
Q psy3045 23 IRFKKPGGESFALLCEAQE------NMWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYLCVVNNSVGG-ES 95 (267)
Q Consensus 23 ~~~~v~~g~~v~l~C~~~~------~~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~-~~ 95 (267)
+...+.+|++|+|.|.+.. +.|++++... .. ...+..|.|.+++.+|+|.|+|.+.+..+. .+
T Consensus 7 p~~~V~~G~~vtL~C~~~~~~~~~~~~w~k~g~~~------~~----~~~~~~l~I~~~~~~dsG~Y~C~~~~~~~~~~s 76 (83)
T cd05753 7 PSRVVFEGEPLVLRCHGWKNKPVYKVTYYRDGKAK------KY----SHSNSNLSIPQATLSDSGSYHCSGIIGSYDYSS 76 (83)
T ss_pred CcceecCCCCEEEEeeCCCCCcceEEEEEECCeEc------cc----cCCCceEEECccCHHHCEEEEEEEEeCCceecC
Confidence 3457999999999999843 8999964211 11 112457999999999999999999998875 34
Q ss_pred EEEEEE
Q psy3045 96 VETVLT 101 (267)
Q Consensus 96 ~~~~l~ 101 (267)
..+.|+
T Consensus 77 ~~~~i~ 82 (83)
T cd05753 77 EPVSIT 82 (83)
T ss_pred CCEEEE
Confidence 444444
No 175
>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin. Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.
Probab=99.14 E-value=1.9e-10 Score=69.12 Aligned_cols=62 Identities=34% Similarity=0.510 Sum_probs=47.2
Q ss_pred EEEEEEecc-----eeeeecccCcceeccccCCceEEE-EeeEEEEeecccCCCeeEEEEEEcCCCccEEEEEE
Q psy3045 33 FALLCEAQE-----NMWFKFIEGSSRKVAVPLNDRVKQ-VSGTLIIKEAKVEDSGKYLCVVNNSVGGESVETVL 100 (267)
Q Consensus 33 v~l~C~~~~-----~~W~~~~~~~~~~~~~~~~~~~~~-~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l 100 (267)
|.|.|.+.+ +.|++++.. +....++.. .++.|.|.++..+|+|.|+|.+.|..|..+..+.|
T Consensus 1 v~L~C~~~g~P~p~i~W~k~g~~------~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~L 68 (69)
T cd05746 1 VQIPCSAQGDPEPTITWNKDGVQ------VTESGKFHISPEGYLAIRDVGVADQGRYECVARNTIGYASVSMVL 68 (69)
T ss_pred CEeEecceEeCCCEEEEEECCEE------CCCCCCEEECCCCEEEECcCChhhCEEEEEEEECCCCcEEEEEEe
Confidence 579999988 999996321 111223332 35689999999999999999999999988776665
No 176
>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=99.11 E-value=4.5e-10 Score=67.30 Aligned_cols=64 Identities=20% Similarity=0.272 Sum_probs=47.6
Q ss_pred EEEEEEecc-----eeeeecccCcceeccccCCceEEEEeeEEEEeecccCCCeeEEEEEEcCCCccEEEEEEEEE
Q psy3045 33 FALLCEAQE-----NMWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTVT 103 (267)
Q Consensus 33 v~l~C~~~~-----~~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~V~ 103 (267)
+.|.|.+.| +.|+|++.... ...++ ..+..|.|.++..+|+|.|+|.+.|..|.......+.+.
T Consensus 1 ~~~~c~v~G~P~P~v~W~k~g~~l~------~~~~~-~~~~~L~I~~v~~~D~G~YtC~a~N~~G~~~~~~t~~l~ 69 (70)
T cd05864 1 VKIPVKYYGYPPPEVKWYKNGQLIV------LNHTF-KRGVHLTIYEVTEKDAGNYTVVLTNPITKEEQRHTFQLV 69 (70)
T ss_pred CEEEeEEEEeCCCEEEEEECCEECC------CCCEE-ccCCEEEECcCCHHHCEEEEEEEEECCCceeeEEEEEEE
Confidence 478999999 99999643221 11122 234579999999999999999999999987766666553
No 177
>smart00408 IGc2 Immunoglobulin C-2 Type.
Probab=99.10 E-value=6.6e-10 Score=65.36 Aligned_cols=58 Identities=43% Similarity=0.854 Sum_probs=49.0
Q ss_pred cCCCEEEEeEeCCCCCceEEEEECCccCCC-----CCCCeEEeccCCCCCCeEEEEEEEcCCC
Q psy3045 148 FGRPAQFTCKYEGNPVKTISWMKDGKPVPD-----HNEPVFRIDSVRKEDKGMYQCVIRNEQE 205 (267)
Q Consensus 148 ~g~~v~l~C~~~~~p~~~~~W~~~~~~~~~-----~~~~~l~i~~~~~~d~g~y~C~~~~~~~ 205 (267)
+|+.+.|.|.+.+.+.+.+.|++++..+.. .....|.|.++..+|+|.|+|.+.|..|
T Consensus 1 ~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~g 63 (63)
T smart00408 1 EGQSVTLTCPAEGDPVPNITWLKDGKPLPESNRLSASGSTLTIKSVSLEDSGEYTCVAENSAG 63 (63)
T ss_pred CCceEEEEeeCccCCCCeEEEEECCEECCCCCEEecCCcEEEEeeCCcccCEEEEEEEecCCC
Confidence 378899999988888889999998877652 2456899999999999999999988653
No 178
>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.
Probab=99.10 E-value=3.6e-10 Score=68.50 Aligned_cols=65 Identities=28% Similarity=0.432 Sum_probs=48.1
Q ss_pred EEEEEEecc-----eeeeecccCcceeccccCCceEEEEeeEEEEeecccCCCeeEEEEEEcCCCccEEEEEEEE
Q psy3045 33 FALLCEAQE-----NMWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTV 102 (267)
Q Consensus 33 v~l~C~~~~-----~~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~V 102 (267)
+.|.|.+.+ +.|++++.... ............|.|.++..+|+|.|+|.+.|..|.....+.|.|
T Consensus 1 v~l~C~~~g~P~p~v~W~k~~~~~~-----~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 70 (71)
T cd05731 1 LLLECIAEGLPTPEISWIKIGGELP-----ADRTKFENFNKTLKIDNVSEEDDGEYRCTASNSLGSARHTISVTV 70 (71)
T ss_pred CEEEEEeeEecCCeEEEEECCeECC-----CCceeEecCCCEEEECCCCHHHCEEEEEEEEeCCceEEEEEEEEE
Confidence 579999998 99999632111 011112223468999999999999999999999998877777765
No 179
>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.
Probab=99.09 E-value=5.9e-10 Score=71.33 Aligned_cols=79 Identities=16% Similarity=0.273 Sum_probs=52.7
Q ss_pred eeEEecCCCeEEEEEEecc-----eeeeecccCcce--eccccCCceEEE-----EeeEEEEeecccCCCeeEEEEEEcC
Q psy3045 23 IRFKKPGGESFALLCEAQE-----NMWFKFIEGSSR--KVAVPLNDRVKQ-----VSGTLIIKEAKVEDSGKYLCVVNNS 90 (267)
Q Consensus 23 ~~~~v~~g~~v~l~C~~~~-----~~W~~~~~~~~~--~~~~~~~~~~~~-----~~~~l~i~~~~~~d~G~Y~C~~~~~ 90 (267)
.++.+.+|+++.|.|.+.+ +.|++.+..... ........|+.. ...+|.|.+++.+|+|.|+|.+...
T Consensus 5 ~~v~v~eG~~v~L~C~~~~~p~~~v~W~~~~~~~l~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~t~ 84 (95)
T cd07701 5 QNVTVVEGGTANLTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSISISDVSLSDEGQYTCSLFTM 84 (95)
T ss_pred ceEEEecCCcEEEEEEEecCCceEEEEeCCCCeEEEEcCcccccCCCEEEEECCCCcEEEEECcCCcccCEEEEEEeEee
Confidence 6889999999999999987 999863110000 000112334332 2358999999999999999999874
Q ss_pred CCccEEEEEEEE
Q psy3045 91 VGGESVETVLTV 102 (267)
Q Consensus 91 ~~~~~~~~~l~V 102 (267)
.+ ......|.|
T Consensus 85 ~~-~~~~~~l~v 95 (95)
T cd07701 85 PV-KTSKAYLTV 95 (95)
T ss_pred cC-ccEEEEEEC
Confidence 33 355555543
No 180
>cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge
Probab=99.08 E-value=1e-09 Score=68.82 Aligned_cols=74 Identities=24% Similarity=0.346 Sum_probs=51.2
Q ss_pred CCeEEEEEEecc-------eeeeecccCcceeccccC----CceEEEEeeEEEEeecccCCCeeEEEEEEcCCCccEEEE
Q psy3045 30 GESFALLCEAQE-------NMWFKFIEGSSRKVAVPL----NDRVKQVSGTLIIKEAKVEDSGKYLCVVNNSVGGESVET 98 (267)
Q Consensus 30 g~~v~l~C~~~~-------~~W~~~~~~~~~~~~~~~----~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~ 98 (267)
|+++.|.|.+.+ +.|...++.......... ........+.|.|.+++.+|+|.|+|.+.|..+.....+
T Consensus 1 Ge~~~L~C~~~~~~~~~~~~~W~~p~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~t 80 (86)
T cd05862 1 GEKLVLNCTARTELNVGIDFQWDYPGKKEQRAKSVSENRRSLQEHTELSSTLTIENVTLSDLGRYTCTASSGQMIAKNST 80 (86)
T ss_pred CCcEEEEEEEEeCCCCcEEEEEEcCCcccccceecccccccccccceeeeEEEEecCCcccCEEEEEEEeecceEecccE
Confidence 789999999974 799875332211110010 001122456899999999999999999999888777777
Q ss_pred EEEEE
Q psy3045 99 VLTVT 103 (267)
Q Consensus 99 ~l~V~ 103 (267)
.|.|.
T Consensus 81 ~~~V~ 85 (86)
T cd05862 81 IVIVH 85 (86)
T ss_pred EEEEe
Confidence 77775
No 181
>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1
Probab=99.07 E-value=1.3e-09 Score=69.15 Aligned_cols=73 Identities=16% Similarity=0.290 Sum_probs=53.6
Q ss_pred eEEecCCCeEEEEEEecc----------eeeeecccCcceeccccCCceEEEEeeEEEEeecccCCCeeEEEEEEcCCCc
Q psy3045 24 RFKKPGGESFALLCEAQE----------NMWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYLCVVNNSVGG 93 (267)
Q Consensus 24 ~~~v~~g~~v~l~C~~~~----------~~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~ 93 (267)
...+.+|.++.|.|...+ +.|+|++.. +....+....++.|.|.++..+|+|.|+|.+.+..+.
T Consensus 4 ~~~~~~g~~~~l~Cp~~~~~~~~~~~p~i~Wyk~~~~------i~~~~~~~~~~~~L~I~~v~~~DsG~YtC~~~n~~~~ 77 (92)
T cd05757 4 KQILFSTKGGKIVCPDLDDFKNENTLPPVQWYKDCKL------LEGDRKRFVKGSKLLIQNVTEEDAGNYTCKLTFTHNG 77 (92)
T ss_pred eEEEeeccCCEEECCChHHccCCCCCCcEEEeECCEE------CCCCccEEecCCEEEEeeCChhhCEEEEEEEEecCCC
Confidence 467889999999997532 999997432 1112222226679999999999999999999998887
Q ss_pred cEEEEEEEE
Q psy3045 94 ESVETVLTV 102 (267)
Q Consensus 94 ~~~~~~l~V 102 (267)
....+...+
T Consensus 78 ~~~~~t~t~ 86 (92)
T cd05757 78 KQYNVTRTI 86 (92)
T ss_pred EEEEEEEEE
Confidence 655544443
No 182
>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins. Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.
Probab=99.07 E-value=9.8e-10 Score=67.46 Aligned_cols=67 Identities=25% Similarity=0.416 Sum_probs=49.6
Q ss_pred EEEEEEecc-----eeeeecccCcceeccccCCceEE--EEeeEEEEeecccCCCeeEEEEEEcCCCccEEEEEEEEE
Q psy3045 33 FALLCEAQE-----NMWFKFIEGSSRKVAVPLNDRVK--QVSGTLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTVT 103 (267)
Q Consensus 33 v~l~C~~~~-----~~W~~~~~~~~~~~~~~~~~~~~--~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~V~ 103 (267)
+.|.|.+.+ +.|++++.... . ....++. .....|.|.++..+|.|.|+|.+.|..|.....+.|.|.
T Consensus 1 ~~L~C~v~g~P~p~v~W~k~~~~l~--~--~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~ 74 (76)
T cd05736 1 ASLRCHAEGIPLPRLTWLKNGMDIT--P--KLSKQLTLIANGSELHISNVRYEDTGAYTCIAKNEAGVDEDISSLFVE 74 (76)
T ss_pred CEeEeEeeecCCCEEEEEECCEECC--C--CCCccEEEeCCCCEEEECcCCcccCEEEEEEEEcCCCCcceEEEEEEE
Confidence 468999998 99999633211 1 1112222 233579999999999999999999999998888888775
No 183
>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=99.07 E-value=8.7e-10 Score=68.22 Aligned_cols=70 Identities=37% Similarity=0.570 Sum_probs=48.7
Q ss_pred EEEEEEecc-----eeeeecccCcce-ec-cccCCceEE-EEeeEEEEeecccCCCeeEEEEEEcCCCcc-EEEEEEEE
Q psy3045 33 FALLCEAQE-----NMWFKFIEGSSR-KV-AVPLNDRVK-QVSGTLIIKEAKVEDSGKYLCVVNNSVGGE-SVETVLTV 102 (267)
Q Consensus 33 v~l~C~~~~-----~~W~~~~~~~~~-~~-~~~~~~~~~-~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~~l~V 102 (267)
|+|.|.+.+ +.|++++..... .. ......++. ..+++|.|.++..+|+|.|+|.|.|..|.. +..+.|.|
T Consensus 1 v~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~~~~~r~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~s~~~~l~~ 79 (79)
T cd05734 1 VTLNCSAEGYPPPTIVWKHSKGRGHPQHTHTCCLAGRIQLLSNGSLLIKHVLEEDSGYYLCKVSNDVGADASKSMVLTV 79 (79)
T ss_pred CEeEeeCeEeCCCEEEEEECCCccccccccccccCCCEEEecCCeEEECcCCcccCEEEEEEEEeCCCCCCceEEEEeC
Confidence 579999888 999996332111 11 111234443 345789999999999999999999999875 66666543
No 184
>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.
Probab=99.06 E-value=2.6e-09 Score=68.34 Aligned_cols=71 Identities=25% Similarity=0.425 Sum_probs=52.4
Q ss_pred ceEEEecCCCEEEEeEeCCCCCceEEEEE--------CCccC-CC---------CCCCeEEeccCCCCCCeEEEEEEEcC
Q psy3045 142 TVQTIDFGRPAQFTCKYEGNPVKTISWMK--------DGKPV-PD---------HNEPVFRIDSVRKEDKGMYQCVIRNE 203 (267)
Q Consensus 142 ~~~~~~~g~~v~l~C~~~~~p~~~~~W~~--------~~~~~-~~---------~~~~~l~i~~~~~~d~g~y~C~~~~~ 203 (267)
.+..+.+|+++.|.|.+.+.|.+.+.|++ ++... .. .....|.|.++..+|+|.|.|.+.+.
T Consensus 5 ~~v~v~eG~~v~L~C~~~~~p~~~v~W~~~~~~~l~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~t~ 84 (95)
T cd07701 5 QNVTVVEGGTANLTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSISISDVSLSDEGQYTCSLFTM 84 (95)
T ss_pred ceEEEecCCcEEEEEEEecCCceEEEEeCCCCeEEEEcCcccccCCCEEEEECCCCcEEEEECcCCcccCEEEEEEeEee
Confidence 44588999999999999999999999975 22111 10 12357899999999999999999875
Q ss_pred CCCceEEEEE
Q psy3045 204 QESAQASGEL 213 (267)
Q Consensus 204 ~~~~~~~~~l 213 (267)
... ..+..|
T Consensus 85 ~~~-~~~~~l 93 (95)
T cd07701 85 PVK-TSKAYL 93 (95)
T ss_pred cCc-cEEEEE
Confidence 333 344444
No 185
>cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively). Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form
Probab=99.05 E-value=3.1e-09 Score=68.25 Aligned_cols=78 Identities=14% Similarity=0.240 Sum_probs=51.5
Q ss_pred eeEEecCCCeEEEEEEecc-----eeeeecccCcceecc--ccCCceEEE-----EeeEEEEeecccCCCeeEEEEEEcC
Q psy3045 23 IRFKKPGGESFALLCEAQE-----NMWFKFIEGSSRKVA--VPLNDRVKQ-----VSGTLIIKEAKVEDSGKYLCVVNNS 90 (267)
Q Consensus 23 ~~~~v~~g~~v~l~C~~~~-----~~W~~~~~~~~~~~~--~~~~~~~~~-----~~~~l~i~~~~~~d~G~Y~C~~~~~ 90 (267)
+++.+.+|++++|.|.+.+ +.|++.......... .....|+.. ....|.|.+++.+|+|.|+|.+...
T Consensus 5 ~~~~v~~G~~v~L~C~~~~~~~~~v~W~~p~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~ 84 (95)
T cd05717 5 QDVTVVEGGTATLKCRVKNNDNSSLQWSNPNQQTLYFNDKRALRDNRIQLVNFSANELSISISNVSLSDEGRYTCSLYTM 84 (95)
T ss_pred CcEEEcCCCCEEEEEEECCCCCceEEEeCCCCcEEEeccccccccCcEEEEcCCCCeeEEEEccCCcccCEEEEEEEecC
Confidence 6788999999999999876 999863211000000 011234332 2357999999999999999999875
Q ss_pred CCccEEEEEEE
Q psy3045 91 VGGESVETVLT 101 (267)
Q Consensus 91 ~~~~~~~~~l~ 101 (267)
.. ....+.|.
T Consensus 85 ~~-~~~~~~~~ 94 (95)
T cd05717 85 PV-QTAKATVT 94 (95)
T ss_pred CC-ceEEEEEE
Confidence 43 34444444
No 186
>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=99.05 E-value=1.2e-09 Score=65.60 Aligned_cols=64 Identities=19% Similarity=0.198 Sum_probs=45.7
Q ss_pred EEEEEEecc-----eeeeecccCcceeccccCCceEEEEeeEEEEeecccCCCeeEEEEEEcCCCccEEEEEEE
Q psy3045 33 FALLCEAQE-----NMWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYLCVVNNSVGGESVETVLT 101 (267)
Q Consensus 33 v~l~C~~~~-----~~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~ 101 (267)
+.|.|.+.| +.|+|++.... ....++...+.+|.|.++..+|+|.|+|.+.+..........++
T Consensus 1 ~~l~c~v~g~P~P~v~W~kdg~~l~-----~~~~~~~~~~~~L~I~~v~~~D~G~YtC~a~~~~~~~~~~~~i~ 69 (72)
T cd07702 1 YRLTPKVKAFPAPEVIWLKDGLPAA-----EKCSRYHVDGYSLVIKDVTEEDAGIYTILLGIKQYNLFKNLTIT 69 (72)
T ss_pred CeEEeeEEEcCCCeEEEEECCEECC-----CCCcEEEeCCCEEEECcCCHHHCEEEEEEEEccccceEeeEEEE
Confidence 478999999 99999742111 11133444556899999999999999999999866655444443
No 187
>PHA03376 BARF1; Provisional
Probab=99.04 E-value=3.6e-09 Score=73.47 Aligned_cols=111 Identities=16% Similarity=0.319 Sum_probs=71.9
Q ss_pred EEecCCCEEEEeEeC---CCCCceEEEEECCc----cC----------------------CCCCCCeEEeccCCCCCCeE
Q psy3045 145 TIDFGRPAQFTCKYE---GNPVKTISWMKDGK----PV----------------------PDHNEPVFRIDSVRKEDKGM 195 (267)
Q Consensus 145 ~~~~g~~v~l~C~~~---~~p~~~~~W~~~~~----~~----------------------~~~~~~~l~i~~~~~~d~g~ 195 (267)
.+..|+.+.|.|.-. ..+...|.|+|.+. .+ ...++.+|.|.++..+|.|+
T Consensus 22 ta~VGEda~LsC~lnp~ssa~~MrIrWqKs~p~~~~VvL~~~ggdVv~~QmEyRGrtD~~~~~gnvsLvI~~l~lSDdGt 101 (221)
T PHA03376 22 TAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAANISHDGN 101 (221)
T ss_pred hheeCCcEEEEecccCccCCCceEEEEEecCCCCCCEEEEEcCCeeeeeeeccccEEEEEecCCeEEEEEEeeeecCCce
Confidence 556699999999854 23566899999532 11 01245678999999999999
Q ss_pred EEEEEEcCCCCceEEEEEEEecccCCCeeecCCceeEEecCCcEEEEEEeecCCCCcEEEEEC
Q psy3045 196 YQCVIRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLD 258 (267)
Q Consensus 196 y~C~~~~~~~~~~~~~~l~v~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~ 258 (267)
|+|.+...........++.+. .|-.+.+..........+...+.|.+.|+|.|.+.|+-+
T Consensus 102 Y~C~fQkge~~~~k~ehLt~V---~~~~Lsv~a~~~dFp~~~~~~i~C~sggfP~P~~~Wle~ 161 (221)
T PHA03376 102 YLCRMKLGETEVTKQEHLSVV---KPLTLSVHSERSQFPDFSVLTVTCTVNAFPHPHVQWLMP 161 (221)
T ss_pred EEEEEEcCCCceeeeeeeeee---ecceEEEEeccccCCCCCeeEEEEecCCcCCchheeccc
Confidence 999998765443333333332 222222222111112255678999988999999999864
No 188
>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4. Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s
Probab=99.04 E-value=1.7e-09 Score=66.49 Aligned_cols=66 Identities=24% Similarity=0.410 Sum_probs=46.2
Q ss_pred EEEEEEecc-----eeeeecccCcceeccccCCce--EEEEeeEEEEeecccCCCeeEEEEEEcCCCccE--EEEEEEEE
Q psy3045 33 FALLCEAQE-----NMWFKFIEGSSRKVAVPLNDR--VKQVSGTLIIKEAKVEDSGKYLCVVNNSVGGES--VETVLTVT 103 (267)
Q Consensus 33 v~l~C~~~~-----~~W~~~~~~~~~~~~~~~~~~--~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~--~~~~l~V~ 103 (267)
|+|.|.+.+ +.|+|++... . ....+ +......|.|.++..+|+|.|+|.+.|..|... ..+.|.|.
T Consensus 1 v~L~C~~~g~P~p~v~W~k~g~~l--~---~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~~~~~l~v~ 75 (77)
T cd05760 1 VTLRCHIDGHPRPTYQWFRDGTPL--S---DGQGNYSVSSKERTLTLRSAGPDDSGLYYCCAHNAFGSVCSSQNFTLSII 75 (77)
T ss_pred CEEEEEeeecCCCcEEEEECCEEC--C---CCCccEEEeCCCCEEEEeeCCcccCEEEEEEEEeCCCeEeeCceEEEEEe
Confidence 579999998 9999963211 1 11112 222345899999999999999999999999753 44555543
No 189
>cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4. Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=99.02 E-value=1.3e-09 Score=69.08 Aligned_cols=62 Identities=18% Similarity=0.344 Sum_probs=49.1
Q ss_pred EEecCCCEEEEeEeCCCCCceEEEEECCccC-C-------------------------CCCCCeEEeccCCCCCCeEEEE
Q psy3045 145 TIDFGRPAQFTCKYEGNPVKTISWMKDGKPV-P-------------------------DHNEPVFRIDSVRKEDKGMYQC 198 (267)
Q Consensus 145 ~~~~g~~v~l~C~~~~~p~~~~~W~~~~~~~-~-------------------------~~~~~~l~i~~~~~~d~g~y~C 198 (267)
.+..|++++|.|...+.+.+.+.|++++... . ......|.|.++..+|+|+|.|
T Consensus 3 ~~~~G~~VtL~C~~s~~~~~~i~W~~~~~k~~~g~~~~l~~~~~~~~~~r~~~~~~~~~~g~~~L~I~~l~~sDsgtY~C 82 (94)
T cd07690 3 LGKKGDTAELPCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRNLWDQGSFPLIIKNLKIEDSDTYIC 82 (94)
T ss_pred EeeCCCCEEEEEEeCCCCCcEEEEEECCcEEccCcCCEEEEecccccCCCCceecccCCCCeEEEEECCCCHHHCEEEEE
Confidence 5678999999999998888999999655221 0 1122569999999999999999
Q ss_pred EEEcCCCC
Q psy3045 199 VIRNEQES 206 (267)
Q Consensus 199 ~~~~~~~~ 206 (267)
.+.+..++
T Consensus 83 ~v~~~~~~ 90 (94)
T cd07690 83 EVEDKKEE 90 (94)
T ss_pred EECCccce
Confidence 99987654
No 190
>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB. TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.
Probab=99.02 E-value=2.7e-09 Score=65.24 Aligned_cols=65 Identities=14% Similarity=0.201 Sum_probs=45.2
Q ss_pred EEEEecc-----eeeeecccCcceeccccCCceE-----EEEeeEEEEeecccCCCeeEEEEEEcCCCccEEEEEEE
Q psy3045 35 LLCEAQE-----NMWFKFIEGSSRKVAVPLNDRV-----KQVSGTLIIKEAKVEDSGKYLCVVNNSVGGESVETVLT 101 (267)
Q Consensus 35 l~C~~~~-----~~W~~~~~~~~~~~~~~~~~~~-----~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~ 101 (267)
|.|.+.| ++|+|++.... .......++ ....+.|.|.++...|+|.|+|.|.|..|.....+.+.
T Consensus 3 i~~~v~G~P~Pti~W~kng~~l~--~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G~~~~~~~~~ 77 (79)
T cd05855 3 IPFTVKGNPKPTLQWFHEGAILN--ESEYICTKIHVINNTEYHGCLQLDNPTHLNNGIYTLVAKNEYGEDEKNVSAH 77 (79)
T ss_pred EEEEEeEeCCCceEEEECCEECC--CCcceeeeeEeecccceEEEEEECCCCcccCEEEEEEEEcCCcccceEEEee
Confidence 6788888 99999743221 111111111 12345899999999999999999999999887766653
No 191
>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun
Probab=99.02 E-value=2.8e-09 Score=65.93 Aligned_cols=65 Identities=14% Similarity=0.213 Sum_probs=44.8
Q ss_pred EEEEecc-----eeeeecccCcceeccccCCceEE-------EEeeEEEEeecccCCCeeEEEEEEcCCCccEEEEEEE
Q psy3045 35 LLCEAQE-----NMWFKFIEGSSRKVAVPLNDRVK-------QVSGTLIIKEAKVEDSGKYLCVVNNSVGGESVETVLT 101 (267)
Q Consensus 35 l~C~~~~-----~~W~~~~~~~~~~~~~~~~~~~~-------~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~ 101 (267)
|.|.+.+ ++|+|++.... ........+. ...+.|.|.+++..|+|.|+|.|.|..|.....+.+.
T Consensus 3 i~~~v~G~P~P~v~W~k~g~~i~--~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~~~ 79 (81)
T cd04971 3 IPFTVRGNPKPTLTWYHNGAVLN--ESDYIRTEIHYEVTTPTEYHGCLQFDNPTHVNNGNYTLVASNEYGQDSKSISAH 79 (81)
T ss_pred EEEEeEeeCCCcEEEEECCEECc--CCCceeEEEEeecccccccEEEEEECCCCcccCeEEEEEEEeCCCCeeeEEEee
Confidence 6788888 99999643221 1111111111 1245799999999999999999999999987766654
No 192
>cd04967 Ig1_Contactin First Ig domain of contactin. Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata
Probab=99.02 E-value=4.1e-09 Score=67.10 Aligned_cols=75 Identities=25% Similarity=0.415 Sum_probs=52.7
Q ss_pred CcccCCCCceeEEecC---CCeEEEEEEecc-----eeeeecccCcceeccccCCceEEEEeeEEEEeeccc-CCCeeEE
Q psy3045 14 PTFSSVSDIIRFKKPG---GESFALLCEAQE-----NMWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKV-EDSGKYL 84 (267)
Q Consensus 14 P~~~~~~~~~~~~v~~---g~~v~l~C~~~~-----~~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~-~d~G~Y~ 84 (267)
|.|...| .+..+.+ |+++.|.|.+.+ +.|++++.... .....++...++.|.|.++.. .|+|.|+
T Consensus 2 P~f~~~p--~~~~~~~~~~~~~~~l~C~~~g~p~p~i~W~k~~~~l~----~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~ 75 (91)
T cd04967 2 PVFEEQP--DDTIFPEESDEGKVSLNCRARGSPPPTYRWLMNGTEID----DEPDSRYSLVGGNLVISNPSKAKDAGRYQ 75 (91)
T ss_pred CeeEeCC--CCEEccCCCCCCEEEEEEeeeEcCCCEEEEEECCEECC----CCCCCCEEEECCEEEEecCCccCCCEEEE
Confidence 5666666 4554443 467999999987 99999643211 111234445567899988875 8999999
Q ss_pred EEEEcCCCcc
Q psy3045 85 CVVNNSVGGE 94 (267)
Q Consensus 85 C~~~~~~~~~ 94 (267)
|.+.|..|..
T Consensus 76 C~a~N~~G~~ 85 (91)
T cd04967 76 CLASNIVGTV 85 (91)
T ss_pred EEEEcCCCEE
Confidence 9999999864
No 193
>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process
Probab=99.01 E-value=2.3e-09 Score=65.75 Aligned_cols=64 Identities=30% Similarity=0.556 Sum_probs=43.6
Q ss_pred EEEEEEecc------eeeeecccCcceeccccCCceEE----EEeeEEEEeecccCCCeeEEEEEEcCCCccEEEE
Q psy3045 33 FALLCEAQE------NMWFKFIEGSSRKVAVPLNDRVK----QVSGTLIIKEAKVEDSGKYLCVVNNSVGGESVET 98 (267)
Q Consensus 33 v~l~C~~~~------~~W~~~~~~~~~~~~~~~~~~~~----~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~ 98 (267)
+.|.|.+.+ +.|++++.... .......++. ...+.|.|.++...|+|.|+|.+.|..|.....+
T Consensus 1 ~~L~C~a~~~~p~~~~~W~~~g~~i~--~~~~~~~~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~a~N~~g~~~~~~ 74 (76)
T cd05895 1 LVLRCETVSEYPSLRFKWFKNGKEIG--AKNKPDNKIKIRKKKKSSELQISKASLADNGEYKCMVSSKLGNDSVTA 74 (76)
T ss_pred CEEEEecccCCCCCceEEEECCcccc--cCCCCCceEEEEeCCcEEEEEECcCCcccCEEEEEEEEeCCCceeEEE
Confidence 479998763 89999643221 1111112222 1346899999999999999999999998766544
No 194
>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=99.01 E-value=1.8e-09 Score=68.34 Aligned_cols=63 Identities=19% Similarity=0.429 Sum_probs=52.1
Q ss_pred EEecCCCEEEEeEe-CCCCCceEEEEECCccC--CCC-------CCCeEEeccCCCCCCeEEEEEEEcCCCCc
Q psy3045 145 TIDFGRPAQFTCKY-EGNPVKTISWMKDGKPV--PDH-------NEPVFRIDSVRKEDKGMYQCVIRNEQESA 207 (267)
Q Consensus 145 ~~~~g~~v~l~C~~-~~~p~~~~~W~~~~~~~--~~~-------~~~~l~i~~~~~~d~g~y~C~~~~~~~~~ 207 (267)
.+.+|+.+.|.|.. .+.|.+.+.|++++.++ ..+ .++.|.+.++..+|+|.|+|.|+|.....
T Consensus 14 ~v~eG~~~~L~C~pP~g~P~p~~~W~k~~~~~~~~~d~r~~~~~~~G~L~fs~v~~~D~g~Y~C~A~n~~~~~ 86 (96)
T cd05727 14 KVKEGWGVVLFCDPPPHYPDLSYRWLLNEFPNFIPEDGRRFVSQTNGNLYIAKVEASDRGNYSCFVSSPSSTK 86 (96)
T ss_pred eeeeCCcEEEeeCCCCCCCCCEEEEEECCcccccccCCCeEEeCCCCcEEEeecCHhhCceeEEEEEecccCC
Confidence 68889999999975 57799999999998754 111 35889999999999999999999986443
No 195
>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.
Probab=99.00 E-value=3e-09 Score=64.87 Aligned_cols=66 Identities=39% Similarity=0.569 Sum_probs=47.6
Q ss_pred EEEEEEecc-----eeeeecccCcceeccccCCceEEE-EeeEEEEeecccCCCeeEEEEEEcCCCc-cEEEEEEEE
Q psy3045 33 FALLCEAQE-----NMWFKFIEGSSRKVAVPLNDRVKQ-VSGTLIIKEAKVEDSGKYLCVVNNSVGG-ESVETVLTV 102 (267)
Q Consensus 33 v~l~C~~~~-----~~W~~~~~~~~~~~~~~~~~~~~~-~~~~l~i~~~~~~d~G~Y~C~~~~~~~~-~~~~~~l~V 102 (267)
++|.|.+.| +.|++++.... .....++.. .++.|.|.++..+|+|.|+|.+.|..|. .+....|.|
T Consensus 1 a~l~C~~~G~P~p~v~W~k~~~~~~----~~~~~~~~~~~~g~L~i~~~~~~D~G~Y~C~a~N~~G~~~s~~a~l~v 73 (74)
T cd05738 1 ATMLCAASGNPDPEITWFKDFLPVD----TTSNGRIKQLRSGALQIENSEESDQGKYECVATNSAGTRYSAPANLYV 73 (74)
T ss_pred CEEEEEEeEecCCEEEEEECCEECc----cCCCCCEEEcCCcEEEECCCChhhCEEEEEEEECCCCceEcccEEEEE
Confidence 479999999 99999632111 011233332 3557999999999999999999999987 466666665
No 196
>cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B. Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis.
Probab=99.00 E-value=4.4e-09 Score=65.05 Aligned_cols=74 Identities=18% Similarity=0.216 Sum_probs=56.1
Q ss_pred eeEEecCCCeEEEEEEecc----eeeeecccCcceeccccCCceEEEEeeEEEEeecccCCCeeEEEEEE-cCCCccEEE
Q psy3045 23 IRFKKPGGESFALLCEAQE----NMWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYLCVVN-NSVGGESVE 97 (267)
Q Consensus 23 ~~~~v~~g~~v~l~C~~~~----~~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~-~~~~~~~~~ 97 (267)
...++.+|+++.|.|...+ +.|++++.. +..+.++......|.|..++..|+|.|.|.+. ++.......
T Consensus 4 ~~~tv~~g~~v~L~C~~~s~~A~v~W~~ng~~------l~~~~r~~~~~~GLlI~~~~~~dsG~Y~C~s~E~gf~~~~~~ 77 (85)
T cd05872 4 KNRTVAPGADVVLPCQLRSNLASPVWLFNGTP------LNAQFSYRVGTDGLLILVTSPEHSGTYRCYSEEEGFQQLVAS 77 (85)
T ss_pred eEEEEecCCCEEEECCCCCCCccEEEEECCcc------cCCCcceEEeCCCCEEEECCHhhCEEEEEEEecCCCeEEEEE
Confidence 5789999999999999998 999997443 23346777677779999999999999999986 333333444
Q ss_pred EEEEE
Q psy3045 98 TVLTV 102 (267)
Q Consensus 98 ~~l~V 102 (267)
+.|.|
T Consensus 78 y~l~v 82 (85)
T cd05872 78 YSLNV 82 (85)
T ss_pred EEEEE
Confidence 44444
No 197
>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins. Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin
Probab=98.99 E-value=3.7e-09 Score=66.43 Aligned_cols=78 Identities=27% Similarity=0.413 Sum_probs=53.6
Q ss_pred eEEecCCCeEEEEEEecc-----eeeeecccCcceeccccCCceEEEEeeEEEEeecccCCCeeEEEEEEcCCCccEEEE
Q psy3045 24 RFKKPGGESFALLCEAQE-----NMWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYLCVVNNSVGGESVET 98 (267)
Q Consensus 24 ~~~v~~g~~v~l~C~~~~-----~~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~ 98 (267)
...+.+|+++.|.|.+.+ +.|++++.......... ..........|.|.++..+|+|.|+|.+.|..|.....+
T Consensus 3 ~~~~~~G~~~~l~C~~~~~p~~~v~W~k~~~~~~~~~~~~-~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~g~~~~~~ 81 (85)
T cd05729 3 LHAVPAGSTVRLKCPASGNPRPTITWLKDGKPFKKEHRIG-GYKVRKKKWTLILESVVPSDSGKYTCIVENKYGSINHTY 81 (85)
T ss_pred eeEecCCCcEEEEEEcCCCCCCeEEEEECCEECcccCcee-EEEccCcEEEEEEeECCcccCEEEEEEEEECCceEEEEE
Confidence 356779999999999987 99999632211000000 000112234799999999999999999999988877666
Q ss_pred EEEE
Q psy3045 99 VLTV 102 (267)
Q Consensus 99 ~l~V 102 (267)
.|.|
T Consensus 82 ~l~v 85 (85)
T cd05729 82 KVDV 85 (85)
T ss_pred EEeC
Confidence 6653
No 198
>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A ....
Probab=98.99 E-value=9.6e-10 Score=68.25 Aligned_cols=60 Identities=30% Similarity=0.634 Sum_probs=50.7
Q ss_pred EEecCCCEEEEeEeCCCCCceEEEEECCccCCCCCCCeEEeccCCCCCCeEEEEEEEcCCC
Q psy3045 145 TIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNEPVFRIDSVRKEDKGMYQCVIRNEQE 205 (267)
Q Consensus 145 ~~~~g~~v~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~ 205 (267)
.+.+|+.+.|.|.+.+.|...+.|++++..+.... ..+.+..+..+|.|.|+|.+.+..+
T Consensus 10 ~v~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~-~~~~~~~~~~~~~g~y~C~~~~~~~ 69 (80)
T PF13895_consen 10 SVEEGDSVTLTCSVSGNPPPQVQWYKNGSPINSSQ-NGLFIPNVSPEDSGNYTCRASNGSG 69 (80)
T ss_dssp EEETTSEEEEEEEEESSSSSEEEEEETTEEEEEES-SEEEESSEEGGGTEEEEEEEEETTE
T ss_pred EEeCCCcEEEEEEEEcccceeeeeeeeeeeeeeee-eeeeeeeeccccCEEEEEEEEeCCC
Confidence 68889999999999988889999999988776332 2377788899999999999998654
No 199
>cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge
Probab=98.98 E-value=4e-09 Score=66.17 Aligned_cols=68 Identities=21% Similarity=0.296 Sum_probs=52.3
Q ss_pred CCCEEEEeEeCCCC--CceEEEEECCccCCC---------------CCCCeEEeccCCCCCCeEEEEEEEcCCCCceEEE
Q psy3045 149 GRPAQFTCKYEGNP--VKTISWMKDGKPVPD---------------HNEPVFRIDSVRKEDKGMYQCVIRNEQESAQASG 211 (267)
Q Consensus 149 g~~v~l~C~~~~~p--~~~~~W~~~~~~~~~---------------~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~ 211 (267)
|+++.|.|.+.+.+ ...+.|.+.+..... ...+.|.|.++..+|+|.|+|.|.|..+....+.
T Consensus 1 Ge~~~L~C~~~~~~~~~~~~~W~~p~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~t 80 (86)
T cd05862 1 GEKLVLNCTARTELNVGIDFQWDYPGKKEQRAKSVSENRRSLQEHTELSSTLTIENVTLSDLGRYTCTASSGQMIAKNST 80 (86)
T ss_pred CCcEEEEEEEEeCCCCcEEEEEEcCCcccccceecccccccccccceeeeEEEEecCCcccCEEEEEEEeecceEecccE
Confidence 68899999997654 558899886653211 1246799999999999999999999887777677
Q ss_pred EEEEe
Q psy3045 212 ELKLG 216 (267)
Q Consensus 212 ~l~v~ 216 (267)
.+.|.
T Consensus 81 ~~~V~ 85 (86)
T cd05862 81 IVIVH 85 (86)
T ss_pred EEEEe
Confidence 66664
No 200
>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin. Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula
Probab=98.98 E-value=9.6e-09 Score=65.10 Aligned_cols=71 Identities=15% Similarity=0.261 Sum_probs=51.4
Q ss_pred EEEecCCCEEEEeEeCCCCCceEEEEECCc--cCC----CC-----CCCeEEeccCCCCCCeEEEEEEEc-CCCCceEEE
Q psy3045 144 QTIDFGRPAQFTCKYEGNPVKTISWMKDGK--PVP----DH-----NEPVFRIDSVRKEDKGMYQCVIRN-EQESAQASG 211 (267)
Q Consensus 144 ~~~~~g~~v~l~C~~~~~p~~~~~W~~~~~--~~~----~~-----~~~~l~i~~~~~~d~g~y~C~~~~-~~~~~~~~~ 211 (267)
+.+.+|+.+.|.|.. +.|.+.+.|++++. ... .. ....|.|..+..+|+|.|.|.+.+ ..+......
T Consensus 6 ~~~~eG~~v~L~C~~-~~p~p~v~Wykq~~g~~~~~~~~~~~r~~~~~~~L~I~~~~~~DsG~Y~C~a~~~~~~~~~~~~ 84 (91)
T cd05871 6 VYGVENNSTFLECLP-KSPQASVKWLFQRGGDQRKEEVKTEERLIHTERGLLLRSLQRSDAGVYTCTAVEHSFSQTLAKY 84 (91)
T ss_pred EEEecCCcEEEEEEC-CCCCceEEEEEECCCCCccccccccccEEEecCeEEEeeCChhHCEEEEEEEEccCCeEEEEEE
Confidence 367889999999996 47888999998432 211 11 235699999999999999999985 444444455
Q ss_pred EEEE
Q psy3045 212 ELKL 215 (267)
Q Consensus 212 ~l~v 215 (267)
+|.|
T Consensus 85 ~l~v 88 (91)
T cd05871 85 TLHV 88 (91)
T ss_pred EEEE
Confidence 5554
No 201
>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=98.97 E-value=2.3e-09 Score=67.86 Aligned_cols=68 Identities=21% Similarity=0.347 Sum_probs=50.1
Q ss_pred eeEEecCCCeEEEEEEecc------eeeeecccCcceeccccCCceEEE-EeeEEEEeecccCCCeeEEEEEEcCCCc
Q psy3045 23 IRFKKPGGESFALLCEAQE------NMWFKFIEGSSRKVAVPLNDRVKQ-VSGTLIIKEAKVEDSGKYLCVVNNSVGG 93 (267)
Q Consensus 23 ~~~~v~~g~~v~l~C~~~~------~~W~~~~~~~~~~~~~~~~~~~~~-~~~~l~i~~~~~~d~G~Y~C~~~~~~~~ 93 (267)
....+.+|+.+.|.|.... +.|++++.... .. ....++.. .++.|.|.+++.+|+|.|+|.|+|....
T Consensus 11 ~~~~v~eG~~~~L~C~pP~g~P~p~~~W~k~~~~~~--~~-~d~r~~~~~~~G~L~fs~v~~~D~g~Y~C~A~n~~~~ 85 (96)
T cd05727 11 DEVKVKEGWGVVLFCDPPPHYPDLSYRWLLNEFPNF--IP-EDGRRFVSQTNGNLYIAKVEASDRGNYSCFVSSPSST 85 (96)
T ss_pred CceeeeeCCcEEEeeCCCCCCCCCEEEEEECCcccc--cc-cCCCeEEeCCCCcEEEeecCHhhCceeEEEEEecccC
Confidence 5678999999999998766 99999632111 11 11223333 3689999999999999999999987644
No 202
>cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=98.97 E-value=4e-09 Score=66.78 Aligned_cols=65 Identities=17% Similarity=0.356 Sum_probs=51.4
Q ss_pred EEecCCCEEEEeE-eCC----CCCceEEEEECCccCCCC--------CCCeEEeccCCCCCCeEEEEEEEcCCCCceE
Q psy3045 145 TIDFGRPAQFTCK-YEG----NPVKTISWMKDGKPVPDH--------NEPVFRIDSVRKEDKGMYQCVIRNEQESAQA 209 (267)
Q Consensus 145 ~~~~g~~v~l~C~-~~~----~p~~~~~W~~~~~~~~~~--------~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~ 209 (267)
.+..|.+..|.|. ..+ .+.+.+.||||+.++... +...|.|.++..+|+|.|+|.+.+..+....
T Consensus 6 ~~~~~~~~~l~Cp~~~~f~~~~~~~~v~WYKd~~~l~~~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~~~~~~~g~~y 83 (95)
T cd05897 6 ILFTSTSGKLVCPDLSDFTINRTDVELQWYKDSVLLDKDNEKFYSLKGSTYLHIIDVSLNDSGYYTCKLQFTHEGKKY 83 (95)
T ss_pred EeccccCcEEECCCHHHcccCCCCCcEEEccCCEECcCCCcceEecCCCCEEEEEEcChhhCEEEEEEEEEeeCCEEE
Confidence 5667899999997 233 356799999999987632 2468999999999999999999998655433
No 203
>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.
Probab=98.96 E-value=1.4e-08 Score=64.33 Aligned_cols=74 Identities=14% Similarity=0.335 Sum_probs=61.6
Q ss_pred eEEEecCCCEEEEeEeCCCCCce-EEEEECCccCCCCC--------------CCeEEeccCCCCCCeEEEEEEEcCCCCc
Q psy3045 143 VQTIDFGRPAQFTCKYEGNPVKT-ISWMKDGKPVPDHN--------------EPVFRIDSVRKEDKGMYQCVIRNEQESA 207 (267)
Q Consensus 143 ~~~~~~g~~v~l~C~~~~~p~~~-~~W~~~~~~~~~~~--------------~~~l~i~~~~~~d~g~y~C~~~~~~~~~ 207 (267)
.+.+.+|+++.|.|.+..+|+|. +.|.+++..+.... .+.|.+..++.++.|.|+|.|.|.....
T Consensus 12 ~~~v~~gE~~~L~V~ieAYP~p~~~~W~~~~~~l~~~~~~~~~~~~~~~~rY~S~L~L~Rlk~~E~G~YTf~a~N~~~~~ 91 (101)
T cd05860 12 TIFVNAGENLDLIVEYEAYPKPEHQQWIYMNRTLTNTSDHYVKSRNESNNRYVSELHLTRLKGTEGGTYTFLVSNSDASA 91 (101)
T ss_pred eEEEECCCCEEEEEEEEeCCCCeeeEEEcCCcccCccccceeEEeccCceEEEEEEEEeecChhhCcEEEEEEECCCCeE
Confidence 34789999999999999999986 99999877553211 1578899999999999999999999888
Q ss_pred eEEEEEEEe
Q psy3045 208 QASGELKLG 216 (267)
Q Consensus 208 ~~~~~l~v~ 216 (267)
..++.|.|+
T Consensus 92 s~tF~l~v~ 100 (101)
T cd05860 92 SVTFNVYVN 100 (101)
T ss_pred EEEEEEEEe
Confidence 888877764
No 204
>cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D
Probab=98.96 E-value=5.2e-09 Score=67.85 Aligned_cols=78 Identities=21% Similarity=0.211 Sum_probs=52.6
Q ss_pred eEEecCCCeEEEEEEecc-----eeeeecccCccee-------------ccccCCceEEE-EeeEEEEeecccCCCeeEE
Q psy3045 24 RFKKPGGESFALLCEAQE-----NMWFKFIEGSSRK-------------VAVPLNDRVKQ-VSGTLIIKEAKVEDSGKYL 84 (267)
Q Consensus 24 ~~~v~~g~~v~l~C~~~~-----~~W~~~~~~~~~~-------------~~~~~~~~~~~-~~~~l~i~~~~~~d~G~Y~ 84 (267)
+..+.+|++|.|.|.... +.|+|+....... ....+..|... .+++|.|.+++..|+|.|+
T Consensus 7 p~~~~~G~~V~L~v~~~p~~~~~~~W~kg~~~~~~~~I~~y~~~~~~~~~gp~~~gR~~~~~ngSL~I~~v~~~D~G~Y~ 86 (105)
T cd05774 7 PPQVAEGENVLLLVHNLPENLLAYAWYKGKTVSPNFLIASYIISTNSSTPGPAYSGRETIYPNGSLLIQNVTQKDTGFYT 86 (105)
T ss_pred CCcccCCCCEEEEecCCCCCceEEEEEcCCCCCCCEEEEEEECCCcccccCcccCCcEEEeCCCcEEEecCCcccCEEEE
Confidence 447889999999998665 9999952111010 00113344443 4679999999999999999
Q ss_pred EEEEcCCCc-cEEEEEEE
Q psy3045 85 CVVNNSVGG-ESVETVLT 101 (267)
Q Consensus 85 C~~~~~~~~-~~~~~~l~ 101 (267)
|.+.+.... ....+.|.
T Consensus 87 ~~v~~~~~~~~~~~v~l~ 104 (105)
T cd05774 87 LQTITTNFQVEQATVHLQ 104 (105)
T ss_pred EEEEeCCccEEEEEEEEE
Confidence 999887633 44444443
No 205
>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.
Probab=98.95 E-value=6.4e-09 Score=63.44 Aligned_cols=56 Identities=21% Similarity=0.420 Sum_probs=45.3
Q ss_pred EEEEeEeCC-CCCceEEEEECCccCCCCC-----------CCeEEeccCCCCCCeEEEEEEEcCCCCc
Q psy3045 152 AQFTCKYEG-NPVKTISWMKDGKPVPDHN-----------EPVFRIDSVRKEDKGMYQCVIRNEQESA 207 (267)
Q Consensus 152 v~l~C~~~~-~p~~~~~W~~~~~~~~~~~-----------~~~l~i~~~~~~d~g~y~C~~~~~~~~~ 207 (267)
+.|.|...+ .|++.|.||++++++.... .+.|.+.....+|.+.|+|+|.|..+..
T Consensus 2 ~~L~C~s~~skP~a~i~W~k~~~~l~~~~~~~~~~~~~t~~s~L~~~~~~~Ddg~~~~C~A~n~a~~~ 69 (80)
T cd05885 2 VELTCLSPRSKPAATLRWYRDRKELKGVISQQENGKTVSVSNTIRFPVDRKDDGAILSCEASHPALVS 69 (80)
T ss_pred EEEEEeCCCccCCCeEEEEECCEECCCCcccccCCceEEEEEEEEEEeeeccCCcEEEEEEEChhhCC
Confidence 689999765 5899999999999886421 1368888888889999999999987653
No 206
>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs). Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv
Probab=98.95 E-value=3.2e-09 Score=65.02 Aligned_cols=64 Identities=34% Similarity=0.583 Sum_probs=44.0
Q ss_pred EEEEEEecc------eeeeecccCcceeccccCC-ceEE--EEeeEEEEeecccCCCeeEEEEEEcCCCccEEEE
Q psy3045 33 FALLCEAQE------NMWFKFIEGSSRKVAVPLN-DRVK--QVSGTLIIKEAKVEDSGKYLCVVNNSVGGESVET 98 (267)
Q Consensus 33 v~l~C~~~~------~~W~~~~~~~~~~~~~~~~-~~~~--~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~ 98 (267)
+.|.|.+.+ +.|++++..... ..... .++. .....|.|.++..+|+|.|+|.+.|..|.....+
T Consensus 1 ~~l~C~~~g~~P~p~~~W~k~g~~l~~--~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~ 73 (75)
T cd05750 1 LVLKCEATSEYPSLRFKWFKDGKELNR--KNKPRNIKIRNKKKNSELQINKAKLADSGEYTCVVENILGNDTVTA 73 (75)
T ss_pred CEEEEEccCCCCCceEEEEcCCeeccc--cCCcceEEEEecCceEEEEEccCCcccCeEEEEEEEEcCCceeEEE
Confidence 468999877 999996432211 11111 0111 2346899999999999999999999999866554
No 207
>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A ....
Probab=98.95 E-value=9.1e-09 Score=63.78 Aligned_cols=66 Identities=29% Similarity=0.480 Sum_probs=48.1
Q ss_pred EEecCCCeEEEEEEecc-----eeeeecccCcceeccccCCceEEEEeeEEEEeecccCCCeeEEEEEEcCCCc-cEEEE
Q psy3045 25 FKKPGGESFALLCEAQE-----NMWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYLCVVNNSVGG-ESVET 98 (267)
Q Consensus 25 ~~v~~g~~v~l~C~~~~-----~~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~-~~~~~ 98 (267)
..+.+|+++.|.|.+.+ +.|++++. .+......+.+.+++.+|+|.|+|.+.+..+. .+..+
T Consensus 9 ~~v~~g~~~~l~C~~~~~p~~~~~w~~~~~------------~~~~~~~~~~~~~~~~~~~g~y~C~~~~~~~~~~s~~~ 76 (80)
T PF13895_consen 9 QSVEEGDSVTLTCSVSGNPPPQVQWYKNGS------------PINSSQNGLFIPNVSPEDSGNYTCRASNGSGSNTSTSV 76 (80)
T ss_dssp SEEETTSEEEEEEEEESSSSSEEEEEETTE------------EEEEESSEEEESSEEGGGTEEEEEEEEETTEEEEEEEE
T ss_pred eEEeCCCcEEEEEEEEcccceeeeeeeeee------------eeeeeeeeeeeeeeccccCEEEEEEEEeCCCCeEeeeE
Confidence 56899999999999988 99998521 11111123778899999999999999986653 45555
Q ss_pred EEEE
Q psy3045 99 VLTV 102 (267)
Q Consensus 99 ~l~V 102 (267)
.|.|
T Consensus 77 ~v~V 80 (80)
T PF13895_consen 77 NVTV 80 (80)
T ss_dssp EEEE
T ss_pred EeeC
Confidence 5544
No 208
>cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM).
Probab=98.94 E-value=1.1e-08 Score=66.51 Aligned_cols=73 Identities=23% Similarity=0.289 Sum_probs=50.3
Q ss_pred CCeEEEEEEecc--------eeeeecccCcce---------e--ccccCCceEEE-------EeeEEEEeecccCCCeeE
Q psy3045 30 GESFALLCEAQE--------NMWFKFIEGSSR---------K--VAVPLNDRVKQ-------VSGTLIIKEAKVEDSGKY 83 (267)
Q Consensus 30 g~~v~l~C~~~~--------~~W~~~~~~~~~---------~--~~~~~~~~~~~-------~~~~l~i~~~~~~d~G~Y 83 (267)
|++|+|.|.+.. +.|++....... . ....+..|+.. ...+|+|.+++.+|+|.|
T Consensus 1 G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~v~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y 80 (100)
T cd05713 1 GEDAELPCHLSPKMSAEHMEVRWFRSQFSPAVHLYRDGQDQYGEQMPEYRGRTELLKDAIAEGSVALRIHNVRASDEGLY 80 (100)
T ss_pred CCcEEEEeEEcCCCCCCeeEEEEEECCCceeEEEEcCCcccccccCccccceEEeecccccCCcEEEEEEcCChhhCEEE
Confidence 789999999863 889885321110 0 01112345443 235899999999999999
Q ss_pred EEEEEcCCCccEEEEEEEE
Q psy3045 84 LCVVNNSVGGESVETVLTV 102 (267)
Q Consensus 84 ~C~~~~~~~~~~~~~~l~V 102 (267)
+|.+.+..+..+..+.|.|
T Consensus 81 ~C~v~~~~~~~~~~i~l~v 99 (100)
T cd05713 81 TCFFQSDGFYEEATVELKV 99 (100)
T ss_pred EEEEecCCcEEEEEEEEEE
Confidence 9999987766666666665
No 209
>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.
Probab=98.94 E-value=4.1e-09 Score=64.76 Aligned_cols=58 Identities=28% Similarity=0.455 Sum_probs=40.5
Q ss_pred EEEEEEecc-----eeeeecccCcceeccccCCceEE--EEeeEEEEeeccc----CCCeeEEEEEEcCCCcc
Q psy3045 33 FALLCEAQE-----NMWFKFIEGSSRKVAVPLNDRVK--QVSGTLIIKEAKV----EDSGKYLCVVNNSVGGE 94 (267)
Q Consensus 33 v~l~C~~~~-----~~W~~~~~~~~~~~~~~~~~~~~--~~~~~l~i~~~~~----~d~G~Y~C~~~~~~~~~ 94 (267)
+.|.|.+.| ++|++++.... .. ...++. ..++.|.|.++.. +|+|.|+|.|.|..|..
T Consensus 1 i~l~C~~~G~P~P~v~W~k~g~~l~--~~--~~~~~~~~~~~g~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~ 69 (77)
T cd05733 1 IVIKCEAKGNPPPTFSWTRNGTHFD--PE--KDPRVTMKPDSGTLVIDNMNGGRAEDYEGEYQCYASNELGTA 69 (77)
T ss_pred CEEEeeCcccCCCeEEEEECCeECC--CC--CCCCEEEeCCCCEEEEeccCCCCCcCCCEEEEEEEEcCCCcE
Confidence 579999998 99999633211 11 112222 2457899988754 68999999999999874
No 210
>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs.; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....
Probab=98.94 E-value=2.3e-09 Score=63.39 Aligned_cols=58 Identities=28% Similarity=0.416 Sum_probs=37.2
Q ss_pred CCeEEEEEEe-cc-----eeeeecccCcceeccccCCceEEEEeeEEEEeecccCCCeeEEEEE
Q psy3045 30 GESFALLCEA-QE-----NMWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYLCVV 87 (267)
Q Consensus 30 g~~v~l~C~~-~~-----~~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~ 87 (267)
|++++|.|.+ .. +.|++++.....................|.|.+++.+|+|.|+|.|
T Consensus 1 G~~v~L~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~v 64 (64)
T PF00047_consen 1 GSSVTLTCSVSSGPPPTTVTWSKNGQSLPEGSTTNRSTNSVSSTSRLTISNVTPEDSGTYTCVV 64 (64)
T ss_dssp TSEEEEEEEEEESSSTSEEEEEETTTTTSEEEEEEEEETTTEEEEEEEESSCTGGGTEEEEEEE
T ss_pred CCeEEEEeecCCCCCCcEEEEEECCccccCcceeEeecccceeeeEEEEccCCHHHCEEEEEEC
Confidence 7999999999 33 9999974433221111100000001114999999999999999986
No 211
>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs.; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....
Probab=98.94 E-value=3.5e-09 Score=62.61 Aligned_cols=52 Identities=37% Similarity=0.823 Sum_probs=42.7
Q ss_pred CCCEEEEeEe-CCCCCceEEEEECCccCCCC-------CCC----eEEeccCCCCCCeEEEEEE
Q psy3045 149 GRPAQFTCKY-EGNPVKTISWMKDGKPVPDH-------NEP----VFRIDSVRKEDKGMYQCVI 200 (267)
Q Consensus 149 g~~v~l~C~~-~~~p~~~~~W~~~~~~~~~~-------~~~----~l~i~~~~~~d~g~y~C~~ 200 (267)
|+.+.|.|.+ .+.+...+.|++++...... ... .|.|.+++.+|+|.|+|.|
T Consensus 1 G~~v~L~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~v 64 (64)
T PF00047_consen 1 GSSVTLTCSVSSGPPPTTVTWSKNGQSLPEGSTTNRSTNSVSSTSRLTISNVTPEDSGTYTCVV 64 (64)
T ss_dssp TSEEEEEEEEEESSSTSEEEEEETTTTTSEEEEEEEEETTTEEEEEEEESSCTGGGTEEEEEEE
T ss_pred CCeEEEEeecCCCCCCcEEEEEECCccccCcceeEeecccceeeeEEEEccCCHHHCEEEEEEC
Confidence 6889999999 66678899999998876532 112 2999999999999999986
No 212
>cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of
Probab=98.93 E-value=1.5e-08 Score=64.48 Aligned_cols=70 Identities=21% Similarity=0.409 Sum_probs=52.2
Q ss_pred EEecCCCEEEEeEeC-----------CCCCceEEEEECCccCCCC------------CCCeEEeccCCCCCCeEEEEEEE
Q psy3045 145 TIDFGRPAQFTCKYE-----------GNPVKTISWMKDGKPVPDH------------NEPVFRIDSVRKEDKGMYQCVIR 201 (267)
Q Consensus 145 ~~~~g~~v~l~C~~~-----------~~p~~~~~W~~~~~~~~~~------------~~~~l~i~~~~~~d~g~y~C~~~ 201 (267)
.+.+|+.+.|.|..- ......+.|+|++..+... ....|.|.++..+|+|.|+|.+.
T Consensus 11 ~~~~GE~v~l~C~~~~~~~~~~~~~~~~~~~~v~WyK~~~~~~~~~~~~~~~~Ri~~~~~~Lwf~Pa~~eDSG~Y~C~~r 90 (104)
T cd05896 11 MVLAGEPVRIKCALFYGYIRTNYSMAQSAGLSLMWYKSSGDGEEPIEIIFDGVRMSKEEDSIWFRPAELQDSGLYTCVLR 90 (104)
T ss_pred EEcCCCeEEEECCCccccccccccccccCCceEEEEECCCCCCCCCcccccceeEEEeCCEEEEEeCChhhCeEEEEEEC
Confidence 678899999999851 1123489999997544321 24678999999999999999999
Q ss_pred cCCCCceEEEEEE
Q psy3045 202 NEQESAQASGELK 214 (267)
Q Consensus 202 ~~~~~~~~~~~l~ 214 (267)
|.......++.|.
T Consensus 91 N~t~C~~~~i~l~ 103 (104)
T cd05896 91 NSTYCMKVSMSLT 103 (104)
T ss_pred CCCcceEEEEEEE
Confidence 9876655555443
No 213
>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=98.91 E-value=7.9e-09 Score=63.40 Aligned_cols=60 Identities=23% Similarity=0.355 Sum_probs=39.7
Q ss_pred EEEEEEecc-----eeeeecccCcceeccccCCceEEEEeeEEEEeeccc----CCCeeEEEEEEcCCCcc
Q psy3045 33 FALLCEAQE-----NMWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKV----EDSGKYLCVVNNSVGGE 94 (267)
Q Consensus 33 v~l~C~~~~-----~~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~----~d~G~Y~C~~~~~~~~~ 94 (267)
|.|.|.+.| ++|++++.... ........+...+++|.|..+.. .|+|.|+|.|.|..|..
T Consensus 1 ~~l~C~a~G~P~P~i~W~k~g~~l~--~~~~~~~~~~~~~g~l~i~~~~~~~~~~d~G~Y~C~A~N~~G~~ 69 (77)
T cd05874 1 IVIQCEAKGKPPPSFSWTRNGTHFD--IDKDPKVTMKPNTGTLVINIMNGEKAEAYEGVYQCTARNERGAA 69 (77)
T ss_pred CEEEeeCcccCCCeEEEEECCeECC--CcCCCCEEEeCCCceEEEeccccCCCCCCCEEEEEEEEcCCCeE
Confidence 579999999 99999633211 11111112222456788877764 37899999999999874
No 214
>cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4. Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=98.91 E-value=5.6e-09 Score=66.23 Aligned_cols=69 Identities=32% Similarity=0.409 Sum_probs=46.5
Q ss_pred EEecCCCeEEEEEEecc-----eeeeecccCc----cee----ccccCCceEE-------EEeeEEEEeecccCCCeeEE
Q psy3045 25 FKKPGGESFALLCEAQE-----NMWFKFIEGS----SRK----VAVPLNDRVK-------QVSGTLIIKEAKVEDSGKYL 84 (267)
Q Consensus 25 ~~v~~g~~v~l~C~~~~-----~~W~~~~~~~----~~~----~~~~~~~~~~-------~~~~~l~i~~~~~~d~G~Y~ 84 (267)
+.+.+|++|+|.|.+.+ +.|++++... ... .......|+. ....+|+|.++..+|+|+|+
T Consensus 2 v~~~~G~~VtL~C~~s~~~~~~i~W~~~~~k~~~g~~~~l~~~~~~~~~~r~~~~~~~~~~g~~~L~I~~l~~sDsgtY~ 81 (94)
T cd07690 2 VLGKKGDTAELPCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRNLWDQGSFPLIIKNLKIEDSDTYI 81 (94)
T ss_pred eEeeCCCCEEEEEEeCCCCCcEEEEEECCcEEccCcCCEEEEecccccCCCCceecccCCCCeEEEEECCCCHHHCEEEE
Confidence 46789999999999987 9998642110 000 0111222222 22357999999999999999
Q ss_pred EEEEcCCCc
Q psy3045 85 CVVNNSVGG 93 (267)
Q Consensus 85 C~~~~~~~~ 93 (267)
|.+.+..+.
T Consensus 82 C~v~~~~~~ 90 (94)
T cd07690 82 CEVEDKKEE 90 (94)
T ss_pred EEECCccce
Confidence 999886543
No 215
>cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP). Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=98.91 E-value=1.8e-08 Score=66.18 Aligned_cols=76 Identities=25% Similarity=0.412 Sum_probs=53.9
Q ss_pred CCCeEEEEEEec-------c----eeeeecccCccee------------ccccCCceEEEE-----eeEEEEeecccCCC
Q psy3045 29 GGESFALLCEAQ-------E----NMWFKFIEGSSRK------------VAVPLNDRVKQV-----SGTLIIKEAKVEDS 80 (267)
Q Consensus 29 ~g~~v~l~C~~~-------~----~~W~~~~~~~~~~------------~~~~~~~~~~~~-----~~~l~i~~~~~~d~ 80 (267)
.|++|+|.|.+. . +.|++...+.... ....+..|+... ..+|.|.+++.+|+
T Consensus 1 ~G~~vtL~C~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~Ds 80 (106)
T cd05877 1 RGGNVTLPCRYHYEPELSAPRKIRVKWTKLESDYLKEEDVLVAIGTRHKSYGSYQGRVFLRRAHDLDASLVITDLRLEDY 80 (106)
T ss_pred CCCcEEEEeEeECCCcCCCCccceEEEEEecCCCCeeEEEEEEcCcEEEeccCccCcEEecCCCCCcEEEEEccCChHHC
Confidence 489999999753 2 9999964332110 001123454432 35899999999999
Q ss_pred eeEEEEEEcCCCccEEEEEEEEEe
Q psy3045 81 GKYLCVVNNSVGGESVETVLTVTA 104 (267)
Q Consensus 81 G~Y~C~~~~~~~~~~~~~~l~V~~ 104 (267)
|.|+|.+.+..+.....+.|.|.+
T Consensus 81 G~Y~C~v~~~~~~~~~~~~l~v~~ 104 (106)
T cd05877 81 GRYRCEVIDGLEDESVVVALRLRG 104 (106)
T ss_pred EEEEEEEEecccceEEEEEEEEEE
Confidence 999999999888788888888764
No 216
>smart00408 IGc2 Immunoglobulin C-2 Type.
Probab=98.91 E-value=7.4e-09 Score=60.77 Aligned_cols=58 Identities=38% Similarity=0.618 Sum_probs=43.2
Q ss_pred CCCeEEEEEEecc-----eeeeecccCcceeccccCCceEEEEeeEEEEeecccCCCeeEEEEEEcCCC
Q psy3045 29 GGESFALLCEAQE-----NMWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYLCVVNNSVG 92 (267)
Q Consensus 29 ~g~~v~l~C~~~~-----~~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~ 92 (267)
+|+++.|.|.+.+ +.|++++.... ...+.......|.|.++...|+|.|+|.+.+..|
T Consensus 1 ~g~~~~l~C~~~~~~~~~v~W~~~~~~~~------~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~g 63 (63)
T smart00408 1 EGQSVTLTCPAEGDPVPNITWLKDGKPLP------ESNRLSASGSTLTIKSVSLEDSGEYTCVAENSAG 63 (63)
T ss_pred CCceEEEEeeCccCCCCeEEEEECCEECC------CCCEEecCCcEEEEeeCCcccCEEEEEEEecCCC
Confidence 5899999999765 99999532211 1223334456899999999999999999988654
No 217
>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins. Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),
Probab=98.90 E-value=8.4e-09 Score=65.56 Aligned_cols=58 Identities=22% Similarity=0.508 Sum_probs=47.7
Q ss_pred EEecCCCEEEEeEeCCCCCceEEEEECCccCCC------CCCCeEEeccCCCCCCeEEEEEEEcC
Q psy3045 145 TIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPD------HNEPVFRIDSVRKEDKGMYQCVIRNE 203 (267)
Q Consensus 145 ~~~~g~~v~l~C~~~~~p~~~~~W~~~~~~~~~------~~~~~l~i~~~~~~d~g~y~C~~~~~ 203 (267)
.+.+|++|+|.|... .+...+.|+++|..... .....+.|.+++.+|+|.|+|.+.+.
T Consensus 12 vV~~G~~VtL~C~~~-~~~~~f~l~k~g~~~~~~~~~~~~~~~~f~i~~v~~~~~G~Y~C~~~~~ 75 (91)
T cd05751 12 VVPLGKPVTLRCQGP-YGAVEYRLYREGSTFAVKKPPEPQNKAKFFIPSMKREHAGRYRCYYRSG 75 (91)
T ss_pred ccCCCCcEEEEEecC-CCCCEEEEEECCCCccccccCCCceeEEEEccCCChhHCEEEEEEEECC
Confidence 678899999999875 55678999999875431 23467999999999999999999886
No 218
>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins. Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),
Probab=98.90 E-value=9e-09 Score=65.41 Aligned_cols=70 Identities=19% Similarity=0.254 Sum_probs=50.4
Q ss_pred CCcccCCCCceeEEecCCCeEEEEEEecc----eeeeecccCcceeccccCCceEEEEeeEEEEeecccCCCeeEEEEEE
Q psy3045 13 APTFSSVSDIIRFKKPGGESFALLCEAQE----NMWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYLCVVN 88 (267)
Q Consensus 13 ~P~~~~~~~~~~~~v~~g~~v~l~C~~~~----~~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~ 88 (267)
.|.+...| ...|.+|++|+|.|.... +.|++++....... .......+.+.|.+++.+|+|.|+|.+.
T Consensus 2 kP~L~a~p---~~vV~~G~~VtL~C~~~~~~~~f~l~k~g~~~~~~~-----~~~~~~~~~f~i~~v~~~~~G~Y~C~~~ 73 (91)
T cd05751 2 KPSLWAEP---SSVVPLGKPVTLRCQGPYGAVEYRLYREGSTFAVKK-----PPEPQNKAKFFIPSMKREHAGRYRCYYR 73 (91)
T ss_pred CCEEEecC---CCccCCCCcEEEEEecCCCCCEEEEEECCCCccccc-----cCCCceeEEEEccCCChhHCEEEEEEEE
Confidence 36666665 458899999999999877 77888543211110 1112345679999999999999999998
Q ss_pred cC
Q psy3045 89 NS 90 (267)
Q Consensus 89 ~~ 90 (267)
+.
T Consensus 74 ~~ 75 (91)
T cd05751 74 SG 75 (91)
T ss_pred CC
Confidence 76
No 219
>KOG3515|consensus
Probab=98.89 E-value=1.3e-08 Score=86.08 Aligned_cols=211 Identities=20% Similarity=0.284 Sum_probs=119.8
Q ss_pred eEEecCCCeEEEEEEecc-------eeeeecccCcceecc--cc----CCceEEEEeeEEEEeecccCCCeeEEEEEEcC
Q psy3045 24 RFKKPGGESFALLCEAQE-------NMWFKFIEGSSRKVA--VP----LNDRVKQVSGTLIIKEAKVEDSGKYLCVVNNS 90 (267)
Q Consensus 24 ~~~v~~g~~v~l~C~~~~-------~~W~~~~~~~~~~~~--~~----~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~ 90 (267)
......+..+.+.|.... +.|..+.-....... .. ...........+.+.....++.|+|+|.+.+.
T Consensus 106 e~~~~~~~vvqi~c~~~~~~~P~~nlrW~~n~r~e~~~~~~~~~~~~~a~gss~t~~s~l~~~v~Rka~~g~~tC~A~nr 185 (741)
T KOG3515|consen 106 EIFQVDKGVVQIICSAKVAGRPNPNLRWGFNNRAELNAVNQRGRVGAGALGSSYTEPSLLKQTVSRKADNGNYTCPANNR 185 (741)
T ss_pred chhhhcCCeEEEEEeecCCCCCCcceeeeeccEEeecccCCcccccccccCceeccccceeeEEEEecCCceeEcccccc
Confidence 446678899999996555 899875221111110 00 11111133456888888899999999999885
Q ss_pred CCc-cEEEEEEEEEeccccccCCceEEEeCCCceEEEEEeecCCCcccccCCceEEEecCCCEEEEeEeC-CCCCceEEE
Q psy3045 91 VGG-ESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYE-GNPVKTISW 168 (267)
Q Consensus 91 ~~~-~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~-~~p~~~~~W 168 (267)
... ......+.+......... .. ........+.+|+.+.|.|.+. +.|.+.+.|
T Consensus 186 ~s~~l~~~~~~~i~v~~~~~~~--~~----------------------~~~~~~qsF~~g~~inlvc~~~gg~P~~~~~w 241 (741)
T KOG3515|consen 186 NSPGLSFAKQLTIIVEAPCKGI--GI----------------------TGAQEQQSFTEGQTINLVCNAQGGNPSQQQTW 241 (741)
T ss_pred cCccccccceeEeecccccccc--ee----------------------cchhhcCcccccceEEEEehhhcCCcchhhhh
Confidence 322 122222222221110000 00 0001113677899999999765 458889999
Q ss_pred EECCccCCCC-----C------CCeEEeccCCCCCCeEEEEEEEcCCCCceEEEEEEEecccCCCeeecCCceeEEecCC
Q psy3045 169 MKDGKPVPDH-----N------EPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGP 237 (267)
Q Consensus 169 ~~~~~~~~~~-----~------~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v~~~~~~p~~~~~~~~~~~~~g~ 237 (267)
+++....... . ...+.+..-..+..-...|.+.|.. ..+..+.+.. .+-...+.+....+..|.
T Consensus 242 ~~~s~~~~~~sl~~~~~sg~~v~~~~~~~~~r~~~~~~~kc~a~n~~---~~~~~tav~~--~~~~~~Ist~~~~ls~g~ 316 (741)
T KOG3515|consen 242 YKDSRPQSESSLLSQEPSGDTVSSTLVLRVGRQDLQAQLKCKASNLL---AASQITAVQV--KPTAVPISTSDSGLSSGR 316 (741)
T ss_pred ccccccchhhhcccCCCCCCcccccccccccccchhhhhhccccCcc---ccceeeeccc--ccccccccCccccccccc
Confidence 9987765432 1 1233333333334457789998821 2222233321 222333344445577899
Q ss_pred cEEEEEEee-cCCCCcEEEEECCEEcC
Q psy3045 238 NYYFKCIAS-GNPTPEISWYLDGKKLV 263 (267)
Q Consensus 238 ~~~l~C~~~-~~p~~~i~W~~~~~~l~ 263 (267)
...+.|... ++|.+.+.|+++.+...
T Consensus 317 s~r~~c~~sss~p~~~i~w~~~~~~~~ 343 (741)
T KOG3515|consen 317 SARSSCVSSSSKPPAHIAWYKDTKMPK 343 (741)
T ss_pred ccccceeccCCCCccceeeeccCcccc
Confidence 999998665 57778999999776654
No 220
>cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=98.89 E-value=3.3e-08 Score=64.91 Aligned_cols=76 Identities=26% Similarity=0.330 Sum_probs=53.9
Q ss_pred CCCeEEEEEEec---------------c--eeeeecccCccee----------ccccCCceEEE-------EeeEEEEee
Q psy3045 29 GGESFALLCEAQ---------------E--NMWFKFIEGSSRK----------VAVPLNDRVKQ-------VSGTLIIKE 74 (267)
Q Consensus 29 ~g~~v~l~C~~~---------------~--~~W~~~~~~~~~~----------~~~~~~~~~~~-------~~~~l~i~~ 74 (267)
.|++|+|.|.+. . +.|+|...+.... ....+.+|+.. .+.+|+|.+
T Consensus 1 ~G~~VtLpC~~~~~~~~~~~~~~~~~~~~~I~W~k~~~g~~~~ii~~~~~~~~~~~~f~~R~sl~~~~~~~~~asL~I~n 80 (112)
T cd05900 1 LGSSLLIPCYFQDPIAKDPGAPTVAPLSPRIKWSFISKEKESVLLVATEGKVRVNTEYLDRVSLPNYPAIPSDATLEITE 80 (112)
T ss_pred CCCcEEEeeEEeCCcCccccccccCCCCCEEEEEEecCCCccEEEEEECCeEEECccccCeEEecccCCCCCCcEEEEee
Confidence 489999999875 2 8899853321110 01123346554 356899999
Q ss_pred cccCCCeeEEEEEEcCCCccEEEEEEEEEe
Q psy3045 75 AKVEDSGKYLCVVNNSVGGESVETVLTVTA 104 (267)
Q Consensus 75 ~~~~d~G~Y~C~~~~~~~~~~~~~~l~V~~ 104 (267)
++.+|+|.|+|.+.+.....+..+.|.|.+
T Consensus 81 l~~sDsG~Y~C~V~~g~~~~~~~v~l~v~g 110 (112)
T cd05900 81 LRSNDSGTYRCEVMHGIEDNYDTVEVQVKG 110 (112)
T ss_pred cccccCEEEEEEEecCCCCceeEEEEEEEe
Confidence 999999999999998777777777777754
No 221
>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.
Probab=98.88 E-value=1.1e-08 Score=62.71 Aligned_cols=58 Identities=29% Similarity=0.461 Sum_probs=39.9
Q ss_pred EEEEEEecc-----eeeeecccCcceeccccCCceEE--EEeeEEEEeeccc----CCCeeEEEEEEcCCCcc
Q psy3045 33 FALLCEAQE-----NMWFKFIEGSSRKVAVPLNDRVK--QVSGTLIIKEAKV----EDSGKYLCVVNNSVGGE 94 (267)
Q Consensus 33 v~l~C~~~~-----~~W~~~~~~~~~~~~~~~~~~~~--~~~~~l~i~~~~~----~d~G~Y~C~~~~~~~~~ 94 (267)
+.|.|.+.| ++|++++.... .....++. ..+++|.|..+.. .|+|.|+|.|.|..|..
T Consensus 1 ~~l~C~~~G~P~P~v~W~k~g~~~~----~~~~~~~~~~~~~~~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~ 69 (77)
T cd05875 1 IIIECEAKGNPVPTFQWTRNGKFFN----VAKDPRVSMRRRSGTLVIDFSGGGRPEDYEGEYQCFARNNLGTA 69 (77)
T ss_pred CEEEEeccccCCCEEEEEECCEEcc----CcCCCcEEEeCCCceEEEeccCCCCCCCCCEEEEEEEEeccceE
Confidence 479999999 99999643111 11122222 3456899987642 46999999999999974
No 222
>cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins. Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf
Probab=98.88 E-value=1.5e-08 Score=64.77 Aligned_cols=71 Identities=27% Similarity=0.359 Sum_probs=49.1
Q ss_pred CCeEEEEEEecc-----eeeeecccCcceec------------cccCCceEEE-EeeEEEEeecccCCCeeEEEEEEcCC
Q psy3045 30 GESFALLCEAQE-----NMWFKFIEGSSRKV------------AVPLNDRVKQ-VSGTLIIKEAKVEDSGKYLCVVNNSV 91 (267)
Q Consensus 30 g~~v~l~C~~~~-----~~W~~~~~~~~~~~------------~~~~~~~~~~-~~~~l~i~~~~~~d~G~Y~C~~~~~~ 91 (267)
|++|+|.|.+.. +.|++......... ...+..|+.. .+++|.|.+++.+|+|.|+|.+....
T Consensus 1 G~~VtL~c~~~~~~~~~i~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~sL~I~~l~~~DsG~Y~c~v~~~~ 80 (92)
T cd05741 1 GESVTLPVSNLPENLQEITWYKGKDKSVEAEIASYIATNSTVFGPAYSGRETIYPNGSLLIQNLTKEDSGTYTLQIISTN 80 (92)
T ss_pred CCcEEEEcccCCCCCEEEEEECCCCCCcceEEEEEecCCceeECCCcCCeEEEcCCceEEEccCCchhcEEEEEEEEcCC
Confidence 789999999876 99999643321111 1123445444 44789999999999999999998876
Q ss_pred Cc-cEEEEEE
Q psy3045 92 GG-ESVETVL 100 (267)
Q Consensus 92 ~~-~~~~~~l 100 (267)
+. ....+.|
T Consensus 81 ~~~~~~~~~l 90 (92)
T cd05741 81 GVTENAKFFL 90 (92)
T ss_pred CcEEEEEEEE
Confidence 54 3444443
No 223
>cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively). Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form
Probab=98.88 E-value=3.9e-08 Score=63.13 Aligned_cols=62 Identities=23% Similarity=0.434 Sum_probs=47.6
Q ss_pred eEEEecCCCEEEEeEeCCCCCceEEEEECCc---------cCC---------CCCCCeEEeccCCCCCCeEEEEEEEcCC
Q psy3045 143 VQTIDFGRPAQFTCKYEGNPVKTISWMKDGK---------PVP---------DHNEPVFRIDSVRKEDKGMYQCVIRNEQ 204 (267)
Q Consensus 143 ~~~~~~g~~v~l~C~~~~~p~~~~~W~~~~~---------~~~---------~~~~~~l~i~~~~~~d~g~y~C~~~~~~ 204 (267)
...+.+|+++.|.|.+.+.+.+.+.|++.+. .+. ......|.|.+++.+|+|.|.|.+....
T Consensus 6 ~~~v~~G~~v~L~C~~~~~~~~~v~W~~p~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~ 85 (95)
T cd05717 6 DVTVVEGGTATLKCRVKNNDNSSLQWSNPNQQTLYFNDKRALRDNRIQLVNFSANELSISISNVSLSDEGRYTCSLYTMP 85 (95)
T ss_pred cEEEcCCCCEEEEEEECCCCCceEEEeCCCCcEEEeccccccccCcEEEEcCCCCeeEEEEccCCcccCEEEEEEEecCC
Confidence 4478899999999999888888999974211 111 0123578999999999999999998764
No 224
>cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins. Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue.
Probab=98.87 E-value=2.6e-08 Score=65.37 Aligned_cols=76 Identities=28% Similarity=0.384 Sum_probs=53.1
Q ss_pred CCCeEEEEEEec-------c----eeeeecc--cCcce----------eccccCCceEEE-----EeeEEEEeecccCCC
Q psy3045 29 GGESFALLCEAQ-------E----NMWFKFI--EGSSR----------KVAVPLNDRVKQ-----VSGTLIIKEAKVEDS 80 (267)
Q Consensus 29 ~g~~v~l~C~~~-------~----~~W~~~~--~~~~~----------~~~~~~~~~~~~-----~~~~l~i~~~~~~d~ 80 (267)
.|++|+|.|.+. . +.|++.. ..... ........|+.. .+.+|+|.+++.+|+
T Consensus 1 ~G~~V~L~C~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~v~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~sD~ 80 (106)
T cd05714 1 LGGNVTLPCRFHLEPALSAPHGPRIKWTKLESDGAKEVDVLVAIGGRVKVYGSGRVRVPLYPADPGDASLVITDLRLEDS 80 (106)
T ss_pred CCCCEEEeEEeECCcccCCCCCcEEEEEEeCCCCCceEEEEEEcCCEEEEcCCCceEEEeeCCCCCcceEEECCCCHHHC
Confidence 489999999964 1 9999962 11110 000112223332 346899999999999
Q ss_pred eeEEEEEEcCCCccEEEEEEEEEe
Q psy3045 81 GKYLCVVNNSVGGESVETVLTVTA 104 (267)
Q Consensus 81 G~Y~C~~~~~~~~~~~~~~l~V~~ 104 (267)
|.|+|.+.+..+.....+.|.|.+
T Consensus 81 G~Y~C~v~~~~~~~~~~v~L~V~~ 104 (106)
T cd05714 81 GRYRCEVIDGIEDEQDTVELEVRG 104 (106)
T ss_pred EEEEEEEEcCCCceEEEEEEEEEE
Confidence 999999998877778888888865
No 225
>cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=98.86 E-value=1.8e-08 Score=62.75 Aligned_cols=64 Identities=22% Similarity=0.487 Sum_probs=46.1
Q ss_pred EEEEeEeCC-CCCceEEEEECCccCCCCC--------------CCeEEeccCCCCCCeEEEEEEEcCCCCceEEEEEEE
Q psy3045 152 AQFTCKYEG-NPVKTISWMKDGKPVPDHN--------------EPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKL 215 (267)
Q Consensus 152 v~l~C~~~~-~p~~~~~W~~~~~~~~~~~--------------~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v 215 (267)
+.|.|.+.| .|.+.++|++++.++.... .+.|.+.....++.|.|+|.|.|..........+.+
T Consensus 2 ~~L~C~v~g~~P~~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~~~~y~C~a~n~~l~~~~~~s~~l 80 (82)
T cd05759 2 YNLTCRARGAKPAAEIIWFRDGEVLDGATYSKELLKDGKRETTVSTLPITPSDHDTGRTFTCRARNEALPTGKETSVTL 80 (82)
T ss_pred EEEEEEEeCccCCCEEEEEECCEEccCceeeeeEecCCCeEEEEEEEEEeCceecCCCEEEEEEcCccCCCCcEEEEEE
Confidence 689999987 4888999999998764321 134666666677888999999998755444444433
No 226
>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=98.86 E-value=2.4e-08 Score=63.09 Aligned_cols=65 Identities=14% Similarity=0.188 Sum_probs=52.8
Q ss_pred ceEEEecCCCEEEEeE-eCCCCCceEEEEECCccCCC-------CCCCeEEeccCCCCCCe-EEEEEEEcCCCC
Q psy3045 142 TVQTIDFGRPAQFTCK-YEGNPVKTISWMKDGKPVPD-------HNEPVFRIDSVRKEDKG-MYQCVIRNEQES 206 (267)
Q Consensus 142 ~~~~~~~g~~v~l~C~-~~~~p~~~~~W~~~~~~~~~-------~~~~~l~i~~~~~~d~g-~y~C~~~~~~~~ 206 (267)
....+.+|+.+.|.|. ..|.|.|.+.|+.++...-. +..+.|.|.++..+|+| .|.|.|.+....
T Consensus 11 ~~v~V~eG~~~~L~C~pP~g~P~P~i~W~~~~~~~i~~~~Ri~~~~~GnL~fs~v~~~D~g~~Y~C~a~~~~~~ 84 (95)
T cd05845 11 RPVEVEEGDSVVLPCNPPKSAVPLRIYWMNSDLLHITQDERVSMGQNGNLYFANVEEQDSHPDYICHAHFPGLR 84 (95)
T ss_pred ceeEEecCCCEEEEecCCCCCCCCEEEEECCCCccccccccEEECCCceEEEEEEehhhCCCCeEEEEEccccc
Confidence 3458899999999997 68999999999976644211 23588999999999999 899999998643
No 227
>smart00410 IG_like Immunoglobulin like. IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.
Probab=98.86 E-value=4.2e-08 Score=61.38 Aligned_cols=75 Identities=36% Similarity=0.532 Sum_probs=54.0
Q ss_pred eeEEecCCCeEEEEEEecc-----eeeeecccCcceeccccCCceEEEE----eeEEEEeecccCCCeeEEEEEEcCCCc
Q psy3045 23 IRFKKPGGESFALLCEAQE-----NMWFKFIEGSSRKVAVPLNDRVKQV----SGTLIIKEAKVEDSGKYLCVVNNSVGG 93 (267)
Q Consensus 23 ~~~~v~~g~~v~l~C~~~~-----~~W~~~~~~~~~~~~~~~~~~~~~~----~~~l~i~~~~~~d~G~Y~C~~~~~~~~ 93 (267)
....+..|+++.|.|.+.+ +.|+++ ++.. .....++... ...|.|.++...|+|.|+|.+.+..+.
T Consensus 2 ~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~-~~~~----v~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~~~~~~ 76 (86)
T smart00410 2 PSVTVKEGESVTLSCEVSGSPPPEVTWYKQ-GGKL----LAESGRFSVSRSGSNSTLTISNVTPEDSGTYTCAATNSSGS 76 (86)
T ss_pred CcEEEeCCCeEEEEEEEccCCCCeEEEEEC-CCEE----cCCCCcEEEEEcCCeeEEEEEeeccccCeEEEEEEEcCCCe
Confidence 4567889999999999988 899985 1111 1122222221 257999999999999999999987776
Q ss_pred cEEEEEEEE
Q psy3045 94 ESVETVLTV 102 (267)
Q Consensus 94 ~~~~~~l~V 102 (267)
....+.|.|
T Consensus 77 ~~~~~~l~V 85 (86)
T smart00410 77 ASSTTTLTV 85 (86)
T ss_pred EEEEEEEEE
Confidence 655555554
No 228
>smart00409 IG Immunoglobulin.
Probab=98.86 E-value=4.2e-08 Score=61.38 Aligned_cols=75 Identities=36% Similarity=0.532 Sum_probs=54.0
Q ss_pred eeEEecCCCeEEEEEEecc-----eeeeecccCcceeccccCCceEEEE----eeEEEEeecccCCCeeEEEEEEcCCCc
Q psy3045 23 IRFKKPGGESFALLCEAQE-----NMWFKFIEGSSRKVAVPLNDRVKQV----SGTLIIKEAKVEDSGKYLCVVNNSVGG 93 (267)
Q Consensus 23 ~~~~v~~g~~v~l~C~~~~-----~~W~~~~~~~~~~~~~~~~~~~~~~----~~~l~i~~~~~~d~G~Y~C~~~~~~~~ 93 (267)
....+..|+++.|.|.+.+ +.|+++ ++.. .....++... ...|.|.++...|+|.|+|.+.+..+.
T Consensus 2 ~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~-~~~~----v~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~~~~~~ 76 (86)
T smart00409 2 PSVTVKEGESVTLSCEVSGSPPPEVTWYKQ-GGKL----LAESGRFSVSRSGSNSTLTISNVTPEDSGTYTCAATNSSGS 76 (86)
T ss_pred CcEEEeCCCeEEEEEEEccCCCCeEEEEEC-CCEE----cCCCCcEEEEEcCCeeEEEEEeeccccCeEEEEEEEcCCCe
Confidence 4567889999999999988 899985 1111 1122222221 257999999999999999999987776
Q ss_pred cEEEEEEEE
Q psy3045 94 ESVETVLTV 102 (267)
Q Consensus 94 ~~~~~~l~V 102 (267)
....+.|.|
T Consensus 77 ~~~~~~l~V 85 (86)
T smart00409 77 ASSTTTLTV 85 (86)
T ss_pred EEEEEEEEE
Confidence 655555554
No 229
>smart00409 IG Immunoglobulin.
Probab=98.86 E-value=6.1e-08 Score=60.61 Aligned_cols=70 Identities=29% Similarity=0.624 Sum_probs=55.4
Q ss_pred EEecCCCEEEEeEeCCCCCceEEEEEC-CccCCCC---------CCCeEEeccCCCCCCeEEEEEEEcCCCCceEEEEEE
Q psy3045 145 TIDFGRPAQFTCKYEGNPVKTISWMKD-GKPVPDH---------NEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELK 214 (267)
Q Consensus 145 ~~~~g~~v~l~C~~~~~p~~~~~W~~~-~~~~~~~---------~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~ 214 (267)
.+..|+++.|.|.+.+.+.+.+.|+++ +..+... ....|.|.++..+|.|.|.|.+.+..+.......+.
T Consensus 5 ~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~~~~~l~ 84 (86)
T smart00409 5 TVKEGESVTLSCEVSGSPPPEVTWYKQGGKLLAESGRFSVSRSGSNSTLTISNVTPEDSGTYTCAATNSSGSASSTTTLT 84 (86)
T ss_pred EEeCCCeEEEEEEEccCCCCeEEEEECCCEEcCCCCcEEEEEcCCeeEEEEEeeccccCeEEEEEEEcCCCeEEEEEEEE
Confidence 677899999999998888889999998 6655311 136799999999999999999998776655554444
No 230
>smart00410 IG_like Immunoglobulin like. IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.
Probab=98.86 E-value=6.1e-08 Score=60.61 Aligned_cols=70 Identities=29% Similarity=0.624 Sum_probs=55.4
Q ss_pred EEecCCCEEEEeEeCCCCCceEEEEEC-CccCCCC---------CCCeEEeccCCCCCCeEEEEEEEcCCCCceEEEEEE
Q psy3045 145 TIDFGRPAQFTCKYEGNPVKTISWMKD-GKPVPDH---------NEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELK 214 (267)
Q Consensus 145 ~~~~g~~v~l~C~~~~~p~~~~~W~~~-~~~~~~~---------~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~ 214 (267)
.+..|+++.|.|.+.+.+.+.+.|+++ +..+... ....|.|.++..+|.|.|.|.+.+..+.......+.
T Consensus 5 ~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~~~~~l~ 84 (86)
T smart00410 5 TVKEGESVTLSCEVSGSPPPEVTWYKQGGKLLAESGRFSVSRSGSNSTLTISNVTPEDSGTYTCAATNSSGSASSTTTLT 84 (86)
T ss_pred EEeCCCeEEEEEEEccCCCCeEEEEECCCEEcCCCCcEEEEEcCCeeEEEEEeeccccCeEEEEEEEcCCCeEEEEEEEE
Confidence 677899999999998888889999998 6655311 136799999999999999999998776655554444
No 231
>cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA). Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development.
Probab=98.85 E-value=4.2e-08 Score=65.18 Aligned_cols=70 Identities=20% Similarity=0.325 Sum_probs=48.2
Q ss_pred eeEEecCCCeEEEEEEecc---------eeeeecc-cCccee------------ccccCCceEEE------EeeEEEEee
Q psy3045 23 IRFKKPGGESFALLCEAQE---------NMWFKFI-EGSSRK------------VAVPLNDRVKQ------VSGTLIIKE 74 (267)
Q Consensus 23 ~~~~v~~g~~v~l~C~~~~---------~~W~~~~-~~~~~~------------~~~~~~~~~~~------~~~~l~i~~ 74 (267)
..+.+.+|++++|.|.+.. +.|++.. .+.... ....+..|+.. .+.+|+|.+
T Consensus 6 ~~v~~~~G~~v~L~C~~s~~~~~~~~~~i~W~~~~~~~~~~~~v~~~~~~~~~~~~~~f~~R~~~~~~~~~~~~sL~I~~ 85 (115)
T cd05880 6 KEVEAVNGTDVRLKCTFSSSAPIGDTLVITWNFRPLDGGREESVFYYHKRPYPPPDGRFKGRVVWDGNIMRRDASILIWQ 85 (115)
T ss_pred ceEEEEcCCCEEEEEEEEeCCCCCCcEEEEEEEECCCCCceeEEEEECCCccccCcccccCeEEEecCCcCCceEEEEee
Confidence 6889999999999999752 8997531 111100 11122334322 245799999
Q ss_pred cccCCCeeEEEEEEcCCC
Q psy3045 75 AKVEDSGKYLCVVNNSVG 92 (267)
Q Consensus 75 ~~~~d~G~Y~C~~~~~~~ 92 (267)
++.+|+|.|+|.+.+...
T Consensus 86 v~~~D~G~Y~C~v~~~~~ 103 (115)
T cd05880 86 LQPTDNGTYTCQVKNPPD 103 (115)
T ss_pred CChhhCEEEEEEEEeCCC
Confidence 999999999999997654
No 232
>cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins. Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also
Probab=98.85 E-value=5.1e-08 Score=61.99 Aligned_cols=72 Identities=25% Similarity=0.410 Sum_probs=51.6
Q ss_pred CeEEEEEEecc------eeeeecccCcceecc-----------ccCCceEEEE-----eeEEEEeecccCCCeeEEEEEE
Q psy3045 31 ESFALLCEAQE------NMWFKFIEGSSRKVA-----------VPLNDRVKQV-----SGTLIIKEAKVEDSGKYLCVVN 88 (267)
Q Consensus 31 ~~v~l~C~~~~------~~W~~~~~~~~~~~~-----------~~~~~~~~~~-----~~~l~i~~~~~~d~G~Y~C~~~ 88 (267)
++|+|.|.... +.|.|..++...... ..+..|+... +.+|.|.+++.+|+|.|+|.+.
T Consensus 1 ~~vtL~C~~~~~~~~~qV~W~k~~~~~~~~ia~y~~~~g~~~~~~y~~Rv~~~~~~~~d~sl~i~nv~~~D~G~Y~C~v~ 80 (96)
T cd05887 1 KNVTLKCRIQVNETITQSSWEKIHGKGSVTLAVHHPMYGISIQPDYQGRVSFKNYSLLDATIMLENVGFSDIGVYICKAV 80 (96)
T ss_pred CCEEEEEEecCCCcEEEEEEEEcCCCCcEEEEEEcccCCcccChhhCCcEEEcCCCCCccEEEEeCCCccccEEEEEEEE
Confidence 46899999885 999885332111110 1233455543 5699999999999999999985
Q ss_pred -cCCCccEEEEEEEE
Q psy3045 89 -NSVGGESVETVLTV 102 (267)
Q Consensus 89 -~~~~~~~~~~~l~V 102 (267)
.+.|.....+.|.|
T Consensus 81 tfP~G~~~~~~~l~~ 95 (96)
T cd05887 81 TFPLGNTQSSTTVTV 95 (96)
T ss_pred eCCCCCeeEEEEEEE
Confidence 67787888888876
No 233
>cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins. Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is
Probab=98.85 E-value=4.5e-08 Score=62.78 Aligned_cols=71 Identities=30% Similarity=0.547 Sum_probs=50.7
Q ss_pred eEEEEEEecc---------eeeeecccCcceec-----------cccCCceEEEE-----eeEEEEeecccCCCeeEEEE
Q psy3045 32 SFALLCEAQE---------NMWFKFIEGSSRKV-----------AVPLNDRVKQV-----SGTLIIKEAKVEDSGKYLCV 86 (267)
Q Consensus 32 ~v~l~C~~~~---------~~W~~~~~~~~~~~-----------~~~~~~~~~~~-----~~~l~i~~~~~~d~G~Y~C~ 86 (267)
.|+|.|.+.. +.|.+..++..... ...+.+|+... +.+|.|.+++.+|+|.|+|.
T Consensus 2 ~v~L~C~f~~~~~~~~~~~V~W~k~~~~~~~~va~y~~~~g~~~~~~f~~Rv~f~~~~~~daSi~i~nl~~~D~G~Y~C~ 81 (99)
T cd05886 2 DVVLHCSFINPLPPVKITQVTWQKLTNGSKQNVAIYNPSMGVSVLPPYRERVTFKNPSFEDGTISLSRLELEDEGVYICE 81 (99)
T ss_pred cEEEEeEeecCCCCCCeEEEEEEECCCCCceEEEEECCcCCcccCccccCcEEEcCCCCCcceEEEcCCccccCEEEEEE
Confidence 6889999873 89988533222111 11234555543 37899999999999999999
Q ss_pred EEc-CCCccEEEEEEEE
Q psy3045 87 VNN-SVGGESVETVLTV 102 (267)
Q Consensus 87 ~~~-~~~~~~~~~~l~V 102 (267)
+.+ +.|..+..+.|.|
T Consensus 82 v~t~P~g~~~~~~~L~V 98 (99)
T cd05886 82 FATFPTGNRESQLNLTV 98 (99)
T ss_pred EEeCCCCCeEEEEEEEE
Confidence 998 6777777788776
No 234
>cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins. Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion.
Probab=98.84 E-value=4.3e-08 Score=63.15 Aligned_cols=73 Identities=27% Similarity=0.387 Sum_probs=50.3
Q ss_pred CCeEEEEEEecc------eeeeecccCccee-----------ccccCCceEEE-----EeeEEEEeecccCCCeeEEEEE
Q psy3045 30 GESFALLCEAQE------NMWFKFIEGSSRK-----------VAVPLNDRVKQ-----VSGTLIIKEAKVEDSGKYLCVV 87 (267)
Q Consensus 30 g~~v~l~C~~~~------~~W~~~~~~~~~~-----------~~~~~~~~~~~-----~~~~l~i~~~~~~d~G~Y~C~~ 87 (267)
|++|+|.|.... +.|++...+.... ....+..|... .+.+|.|.+++.+|+|.|+|.+
T Consensus 1 G~~vtL~C~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~nv~~~D~G~Y~C~~ 80 (97)
T cd05846 1 GGNVTLSCNLTLPEEVLQVTWQKIQGSSPENIATYSEKYGVKIQPSYFRRRSITSLGLNSTSITIWNVTLEDEGCYKCIF 80 (97)
T ss_pred CCcEEEEEEeCCCCeeEEEEEEEcCCCCceEEEEEcccCCcccCCCccCeEEEcCCCCCccEEEEeCCceeeeEEEEEEE
Confidence 789999998665 9999853221110 01112233322 3468999999999999999998
Q ss_pred E-cCCCccEEEEEEEE
Q psy3045 88 N-NSVGGESVETVLTV 102 (267)
Q Consensus 88 ~-~~~~~~~~~~~l~V 102 (267)
. .+.|..+..+.|+|
T Consensus 81 ~~~p~g~~~~~~~L~v 96 (97)
T cd05846 81 NTFPDGSKSGTMCLTV 96 (97)
T ss_pred EeCCCCCeeeEEEEEE
Confidence 7 56677777888876
No 235
>cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG). Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi
Probab=98.84 E-value=5.3e-08 Score=64.10 Aligned_cols=75 Identities=27% Similarity=0.329 Sum_probs=54.2
Q ss_pred CCeEEEEEEec--------------c-eeeeecccCccee----------ccccCCceEEE-------EeeEEEEeeccc
Q psy3045 30 GESFALLCEAQ--------------E-NMWFKFIEGSSRK----------VAVPLNDRVKQ-------VSGTLIIKEAKV 77 (267)
Q Consensus 30 g~~v~l~C~~~--------------~-~~W~~~~~~~~~~----------~~~~~~~~~~~-------~~~~l~i~~~~~ 77 (267)
|++|+|.|.+. . +.|++...+.... ....+.+|+.. ...+|+|.+++.
T Consensus 2 G~~V~LpC~~~~~~~~~~~~~~~~~~~i~W~k~~~~~~~~v~~~~~~~~~~~~~f~gR~~~~~~~~~~~~asL~I~~l~~ 81 (110)
T cd05878 2 SSSVLLPCYFTLPPALPPPSNAPESPRIKWTKLSGQKEVTVLVAQDGVVKVGQEYQGRVSLPNYPENRGDASLEISRLRS 81 (110)
T ss_pred CCCEEEeeEeeCCccccccccCCCCCEEEEEEecCCCcEEEEEEECCEEEecccccCeEEeccCCCCCCcEEEEECCCCh
Confidence 89999999873 1 8999963221111 11233456543 346899999999
Q ss_pred CCCeeEEEEEEcCCCccEEEEEEEEEe
Q psy3045 78 EDSGKYLCVVNNSVGGESVETVLTVTA 104 (267)
Q Consensus 78 ~d~G~Y~C~~~~~~~~~~~~~~l~V~~ 104 (267)
+|+|.|.|.+.......+..+.|.|.+
T Consensus 82 sD~G~Y~C~v~~~~~~~~~~v~l~V~g 108 (110)
T cd05878 82 SDSGVYRCEVMHGIEDEQDTVPLEVTG 108 (110)
T ss_pred hhCEEEEEEEEeCCCcceEEEEEEEEE
Confidence 999999999998776778888888875
No 236
>cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B. Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis.
Probab=98.83 E-value=4.5e-08 Score=60.59 Aligned_cols=59 Identities=20% Similarity=0.449 Sum_probs=48.7
Q ss_pred eEEEecCCCEEEEeEeCCCCCceEEEEECCccCCCC-----CCCeEEeccCCCCCCeEEEEEEEc
Q psy3045 143 VQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDH-----NEPVFRIDSVRKEDKGMYQCVIRN 202 (267)
Q Consensus 143 ~~~~~~g~~v~l~C~~~~~p~~~~~W~~~~~~~~~~-----~~~~l~i~~~~~~d~g~y~C~~~~ 202 (267)
+..+..|+++.|.|...+. .+.+.|++++..+..+ ....|.|..+..+|+|.|.|.+.-
T Consensus 5 ~~tv~~g~~v~L~C~~~s~-~A~v~W~~ng~~l~~~~r~~~~~~GLlI~~~~~~dsG~Y~C~s~E 68 (85)
T cd05872 5 NRTVAPGADVVLPCQLRSN-LASPVWLFNGTPLNAQFSYRVGTDGLLILVTSPEHSGTYRCYSEE 68 (85)
T ss_pred EEEEecCCCEEEECCCCCC-CccEEEEECCcccCCCcceEEeCCCCEEEECCHhhCEEEEEEEec
Confidence 3478899999999998765 5699999999988643 235577899999999999999873
No 237
>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0). Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.
Probab=98.82 E-value=5e-08 Score=64.54 Aligned_cols=71 Identities=20% Similarity=0.350 Sum_probs=50.0
Q ss_pred eeEEecCCCeEEEEEEecc---------eeeeeccc-------------Cccee-ccccCCceEEE------EeeEEEEe
Q psy3045 23 IRFKKPGGESFALLCEAQE---------NMWFKFIE-------------GSSRK-VAVPLNDRVKQ------VSGTLIIK 73 (267)
Q Consensus 23 ~~~~v~~g~~v~l~C~~~~---------~~W~~~~~-------------~~~~~-~~~~~~~~~~~------~~~~l~i~ 73 (267)
..+.+..|+++.|.|.+.. +.|.+... +.... ....+.+|+.. .+.+|.|.
T Consensus 6 ~ev~a~~G~~v~L~C~f~~~~~~~~~~~v~W~~~~~~~~~~~~v~~y~~g~~~~~~~~~f~~Rv~f~g~~~~~daSI~I~ 85 (116)
T cd05879 6 REVYGTVGSDVTLSCSFWSSEWISDDISFTWHYQPDGSRDAISIFHYGKGQPYIDDVGPFKERIEWVGNPSRKDGSIVIH 85 (116)
T ss_pred ceEEEEcCCcEEEEEEEecCCCCCCcEEEEEEEcCCCCCccEEEEEeCCCceecccccCccCceEEeCCCCcCeeEEEEc
Confidence 5778999999999999866 89944211 11110 11223346543 34689999
Q ss_pred ecccCCCeeEEEEEEcCCCc
Q psy3045 74 EAKVEDSGKYLCVVNNSVGG 93 (267)
Q Consensus 74 ~~~~~d~G~Y~C~~~~~~~~ 93 (267)
+++.+|+|+|+|.+.|....
T Consensus 86 nv~~sD~G~Y~C~v~n~p~~ 105 (116)
T cd05879 86 NLDYTDNGTFTCDVKNPPDI 105 (116)
T ss_pred cCCcccCEEEEEEEEcCCCc
Confidence 99999999999999987654
No 238
>cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins. IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=98.80 E-value=5.5e-08 Score=64.22 Aligned_cols=69 Identities=23% Similarity=0.432 Sum_probs=49.7
Q ss_pred eeEEecCCCeEEEEEEecc-----eeeeecccCcceec--------cccCCceEEE------EeeEEEEeecccCCCeeE
Q psy3045 23 IRFKKPGGESFALLCEAQE-----NMWFKFIEGSSRKV--------AVPLNDRVKQ------VSGTLIIKEAKVEDSGKY 83 (267)
Q Consensus 23 ~~~~v~~g~~v~l~C~~~~-----~~W~~~~~~~~~~~--------~~~~~~~~~~------~~~~l~i~~~~~~d~G~Y 83 (267)
..+.+.+|++|+|.|.+.. +.|++...+..... ......|+.. ....|.|.+++.+|+|.|
T Consensus 6 ~~v~~~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~DsG~Y 85 (109)
T cd04983 6 QSLSVQEGENVTLNCNYSTSTFYYLFWYRQYPGQGPQFLIYISSNGEEKEKGRFSATLDKSRKSSSLHISAAQLSDSAVY 85 (109)
T ss_pred CceEEcCCCCEEEEEEECCCCccEEEEEEECCCCCeEEEEEEecCCCcccCCcEEEEEcccCCEEEEEECCCCHHHCEEE
Confidence 6788999999999999986 99998633211110 0012344432 346899999999999999
Q ss_pred EEEEEcCC
Q psy3045 84 LCVVNNSV 91 (267)
Q Consensus 84 ~C~~~~~~ 91 (267)
.|.+.+..
T Consensus 86 ~C~~~~~~ 93 (109)
T cd04983 86 FCALSESG 93 (109)
T ss_pred EEEEecCC
Confidence 99998654
No 239
>cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI. IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another.
Probab=98.79 E-value=4.2e-08 Score=62.64 Aligned_cols=71 Identities=15% Similarity=0.224 Sum_probs=48.4
Q ss_pred CcccCCCCceeEEecCCCeEEEEEEecc----eeeeecccCcceeccccCCceEEEEeeEEEEeecccCCCeeEEEEEEc
Q psy3045 14 PTFSSVSDIIRFKKPGGESFALLCEAQE----NMWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYLCVVNN 89 (267)
Q Consensus 14 P~~~~~~~~~~~~v~~g~~v~l~C~~~~----~~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~ 89 (267)
|.+...+ ...|.+|++|+|.|.... +.|+|++........ ...........+.|..++.+|+|.|+|....
T Consensus 2 P~l~a~p---~~vV~~G~~VTL~C~~~~~~~~f~l~k~g~~~~~~~~--~~~~~~~~~a~f~I~~~~~~~~G~Y~C~~~~ 76 (94)
T cd05711 2 PFLSAHP---SPVVPSGENVTLQCHSDIRFDRFILYKEGRSKPVLHL--YEKHHGGFQASFPLGPVTPAHAGTYRCYGSY 76 (94)
T ss_pred CEEEecC---CCccCCCCeEEEEEecCCCCCEEEEEECCCCCCceec--ccccCCeEEEEEEecCCCcccCEEEEEEEEC
Confidence 4455443 668889999999997665 999997543321110 0111122345789999999999999999863
No 240
>cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c
Probab=98.79 E-value=1.1e-07 Score=61.53 Aligned_cols=72 Identities=31% Similarity=0.525 Sum_probs=49.4
Q ss_pred CeEEEEEEecc--------eeeeecccCccee-----------ccccCCceEEE-----EeeEEEEeecccCCCeeEEEE
Q psy3045 31 ESFALLCEAQE--------NMWFKFIEGSSRK-----------VAVPLNDRVKQ-----VSGTLIIKEAKVEDSGKYLCV 86 (267)
Q Consensus 31 ~~v~l~C~~~~--------~~W~~~~~~~~~~-----------~~~~~~~~~~~-----~~~~l~i~~~~~~d~G~Y~C~ 86 (267)
++|+|.|.+.. +.|+|...+.... ....+..|+.. .+.+|+|.+++.+|+|.|.|.
T Consensus 1 ~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~ 80 (98)
T cd05718 1 ESVTLECSFPVPGPVQITQVTWMKITGGSKQNIAVFHPQYGISIPPSYEGRVSFLNSSLEDATISISNLRLEDEGNYICE 80 (98)
T ss_pred CCEEEEeEeeCCCCceEEEEEEeeECCCCCEEEEEEecCCCcccCcCcCceEEEeCCCCCceEEEEccCCcccCEEEEEE
Confidence 57899998765 9999974431110 00112334433 246899999999999999999
Q ss_pred EEc-CCCccEEEEEEEE
Q psy3045 87 VNN-SVGGESVETVLTV 102 (267)
Q Consensus 87 ~~~-~~~~~~~~~~l~V 102 (267)
+.. +.|.....+.|.|
T Consensus 81 v~~~~~g~~~~~~~l~V 97 (98)
T cd05718 81 FATFPQGNRQKVTTLTV 97 (98)
T ss_pred EEeCCCCcEEEEEEEEe
Confidence 974 6666777777766
No 241
>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=98.79 E-value=4.8e-08 Score=61.75 Aligned_cols=74 Identities=20% Similarity=0.352 Sum_probs=54.6
Q ss_pred CcccCCCCceeEEecCCCeEEEEEEe-cc-----eeeeecccCcceeccccCCceEEE-EeeEEEEeecccCCCe-eEEE
Q psy3045 14 PTFSSVSDIIRFKKPGGESFALLCEA-QE-----NMWFKFIEGSSRKVAVPLNDRVKQ-VSGTLIIKEAKVEDSG-KYLC 85 (267)
Q Consensus 14 P~~~~~~~~~~~~v~~g~~v~l~C~~-~~-----~~W~~~~~~~~~~~~~~~~~~~~~-~~~~l~i~~~~~~d~G-~Y~C 85 (267)
|.|.... ...+.+.+|+.+.|.|.. .+ +.|+++... .+....|+.. .++.|.|.+++.+|.| .|.|
T Consensus 3 ~~~~~~~-~~~v~V~eG~~~~L~C~pP~g~P~P~i~W~~~~~~-----~i~~~~Ri~~~~~GnL~fs~v~~~D~g~~Y~C 76 (95)
T cd05845 3 PKWPKEK-IRPVEVEEGDSVVLPCNPPKSAVPLRIYWMNSDLL-----HITQDERVSMGQNGNLYFANVEEQDSHPDYIC 76 (95)
T ss_pred CcCCccc-cceeEEecCCCEEEEecCCCCCCCCEEEEECCCCc-----cccccccEEECCCceEEEEEEehhhCCCCeEE
Confidence 5555543 268999999999999974 44 999974221 1223455554 4689999999999999 8999
Q ss_pred EEEcCCCc
Q psy3045 86 VVNNSVGG 93 (267)
Q Consensus 86 ~~~~~~~~ 93 (267)
.|.+....
T Consensus 77 ~a~~~~~~ 84 (95)
T cd05845 77 HAHFPGLR 84 (95)
T ss_pred EEEccccc
Confidence 99987643
No 242
>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a
Probab=98.78 E-value=1e-07 Score=60.44 Aligned_cols=68 Identities=13% Similarity=0.210 Sum_probs=48.1
Q ss_pred eeEEecCCCeEEEEEEecc-----eeeeecccCcce--eccccCCceEEE-----EeeEEEEeecccCCCeeEEEEEEcC
Q psy3045 23 IRFKKPGGESFALLCEAQE-----NMWFKFIEGSSR--KVAVPLNDRVKQ-----VSGTLIIKEAKVEDSGKYLCVVNNS 90 (267)
Q Consensus 23 ~~~~v~~g~~v~l~C~~~~-----~~W~~~~~~~~~--~~~~~~~~~~~~-----~~~~l~i~~~~~~d~G~Y~C~~~~~ 90 (267)
+++++.+|+++.|.|.+.+ +.|++.+..... ......+.|+.. ...+|.|.+++.+|+|.|+|.+...
T Consensus 5 ~nvtv~~G~ta~L~C~v~~~~~~~v~w~~~~~~~i~~~~~~~~~d~Rf~~~~~~~~~~tL~I~~vq~~D~G~Y~Cqv~t~ 84 (95)
T cd05881 5 EDVTVVEGEVAIISCRVKNNDDSVIQLLNPNRQTIYFRDVRPLKDSRFQLVNFSSNELRVSLSNVSLSDEGRYFCQLYTD 84 (95)
T ss_pred CceEEcCCCcEEEEEEEccCCccEEEEEecCCcEEEecCccccCCcCEEEEeCCCCEEEEEECcCCcccCEEEEEEEEcc
Confidence 5789999999999999999 889874311100 001113445442 2347999999999999999999753
No 243
>PHA02987 Ig domain OX-2-like protein; Provisional
Probab=98.78 E-value=1.2e-07 Score=66.41 Aligned_cols=85 Identities=18% Similarity=0.301 Sum_probs=61.7
Q ss_pred eeEEecCCCeEEEEEEec-c-----eeeeecccCcce------eccccCCceEEE-----EeeEEEEeecccCCCeeEEE
Q psy3045 23 IRFKKPGGESFALLCEAQ-E-----NMWFKFIEGSSR------KVAVPLNDRVKQ-----VSGTLIIKEAKVEDSGKYLC 85 (267)
Q Consensus 23 ~~~~v~~g~~v~l~C~~~-~-----~~W~~~~~~~~~------~~~~~~~~~~~~-----~~~~l~i~~~~~~d~G~Y~C 85 (267)
....|.+|++|.|.|... + ++|+|..+.... .....+.+|+.. .+.+|+|.+++.+|+|.|+|
T Consensus 23 ~~v~V~ege~VtLsCs~t~s~~~~qVtWkK~~~~IatY~~~g~~i~~~Fk~Rve~mS~s~~~StItIknVt~sDeGcY~C 102 (189)
T PHA02987 23 VKITVSEHVNVKISCNKTSSFNSILITWKKNNKTIAGYGPCGPVIVDKFKNKIEYLSKSFNESTILIKNVSLKDNGCYTC 102 (189)
T ss_pred EEEEEcCCCCEEEEEecCCCCccceEEEEEcCCCEEEEecCCcEEChhhcCeEEEeccCCCcceEEEEeCChhhCeEEEE
Confidence 567899999999999985 3 999996321110 011112335543 45689999999999999999
Q ss_pred EEE-cCCC-ccEEEEEEEEEeccc
Q psy3045 86 VVN-NSVG-GESVETVLTVTAPLA 107 (267)
Q Consensus 86 ~~~-~~~~-~~~~~~~l~V~~~~~ 107 (267)
.+. .+.| ..+..+.|+|.....
T Consensus 103 ~F~tfp~G~~~~gt~CLtVt~~~~ 126 (189)
T PHA02987 103 IFNTLLSKNNEKGVVCLNVTTDSY 126 (189)
T ss_pred EEEecCCCCCceeEEEEEEEchhh
Confidence 996 5677 678888999986443
No 244
>cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins. Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2
Probab=98.75 E-value=1.3e-07 Score=63.02 Aligned_cols=70 Identities=26% Similarity=0.408 Sum_probs=48.4
Q ss_pred eeEEecCCCeEEEEEEecc---------eeeeecccCcc--ee------------ccccCCceEEEE------eeEEEEe
Q psy3045 23 IRFKKPGGESFALLCEAQE---------NMWFKFIEGSS--RK------------VAVPLNDRVKQV------SGTLIIK 73 (267)
Q Consensus 23 ~~~~v~~g~~v~l~C~~~~---------~~W~~~~~~~~--~~------------~~~~~~~~~~~~------~~~l~i~ 73 (267)
..+.+.+|++|+|.|.+.. +.|++...+.. .. ....+..|+... +.+|+|.
T Consensus 6 ~~v~v~~G~~vtL~C~~s~~~~~~~~~~v~W~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~ 85 (116)
T cd05715 6 REVYAVNGSDVRLKCTFSSSEPISDDISVTWSFQPEGSGDTESIFHYHKGPYYPLKDGRFKDRVEWVGNPSRKDASIVIH 85 (116)
T ss_pred CeEEEEcCCCeEEEeEEeCCCCcCCceEEEEEEecCCCCCcEEEEEEcCCccccccCccccCcEEEecCCcCCeeEEEEe
Confidence 6788999999999998753 88987432211 00 011222333322 3689999
Q ss_pred ecccCCCeeEEEEEEcCCC
Q psy3045 74 EAKVEDSGKYLCVVNNSVG 92 (267)
Q Consensus 74 ~~~~~d~G~Y~C~~~~~~~ 92 (267)
+++.+|+|.|+|.+.+...
T Consensus 86 ~v~~~D~G~Y~C~v~~~~~ 104 (116)
T cd05715 86 NLQFTDNGTYTCDVKNPPD 104 (116)
T ss_pred eCCcccCEEEEEEEEeCCC
Confidence 9999999999999997654
No 245
>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.
Probab=98.75 E-value=1.1e-07 Score=58.07 Aligned_cols=62 Identities=15% Similarity=0.221 Sum_probs=44.7
Q ss_pred eEEEEEEecc------eeeeecccCcceeccccCCceEEEEeeEEEEeecccCCCeeEEEEEEcCCCc
Q psy3045 32 SFALLCEAQE------NMWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYLCVVNNSVGG 93 (267)
Q Consensus 32 ~v~l~C~~~~------~~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~ 93 (267)
.++|.|...+ ++||+++.............+.....++|.+......|.+.|+|+|.|..+.
T Consensus 1 ~~~L~C~s~~skP~a~i~W~k~~~~l~~~~~~~~~~~~~t~~s~L~~~~~~~Ddg~~~~C~A~n~a~~ 68 (80)
T cd05885 1 EVELTCLSPRSKPAATLRWYRDRKELKGVISQQENGKTVSVSNTIRFPVDRKDDGAILSCEASHPALV 68 (80)
T ss_pred CEEEEEeCCCccCCCeEEEEECCEECCCCcccccCCceEEEEEEEEEEeeeccCCcEEEEEEEChhhC
Confidence 3789999988 9999975433221111223344446678999999999999999999998765
No 246
>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C ....
Probab=98.72 E-value=4.4e-08 Score=59.78 Aligned_cols=69 Identities=23% Similarity=0.418 Sum_probs=45.2
Q ss_pred CCcccCCCCceeEEecCCCeEEEEEEecc------eeeeecccCcceeccccCCceEEEEeeEEEEeecccCCCeeEEEE
Q psy3045 13 APTFSSVSDIIRFKKPGGESFALLCEAQE------NMWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYLCV 86 (267)
Q Consensus 13 ~P~~~~~~~~~~~~v~~g~~v~l~C~~~~------~~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~ 86 (267)
+|.|...+ .......+. ++|.|.+.+ +.|+.. ..............++.|.|.++..+|.|.|+|.
T Consensus 1 kP~I~~~~--~~~~~~~~~-~~l~C~~~~~~~~~~~~W~~~-----~~~~~~~~~~~~~~~~~L~i~~v~~~~~g~y~C~ 72 (75)
T PF13927_consen 1 KPQISVPP--PPVVTSGGS-VTLTCSAEGGPPPPSISWYDS-----NPSFNSNSRGSSSSNSTLTISNVTRSDNGTYTCI 72 (75)
T ss_dssp ESEEEEES--TSEEETTEE-EEEEEEESSEESSEEEEEETE-----EEEEEEEEEEEEEEEEEEEESSCCGGGTEEEEEE
T ss_pred CCEEEEcC--CCcEeecee-EEEEEEEccccCCeEEEEEec-----CCceeeeeeeccceeeEEEEccCCHHhCcEEEEE
Confidence 35666555 333333333 999999998 899811 0011111222334567899999999999999999
Q ss_pred EEc
Q psy3045 87 VNN 89 (267)
Q Consensus 87 ~~~ 89 (267)
|.|
T Consensus 73 a~N 75 (75)
T PF13927_consen 73 ASN 75 (75)
T ss_dssp EEE
T ss_pred EEC
Confidence 976
No 247
>cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region
Probab=98.71 E-value=1.2e-07 Score=61.00 Aligned_cols=75 Identities=23% Similarity=0.203 Sum_probs=50.0
Q ss_pred cCCCeEEEEEEecc------eeeeecccCcc-----------eeccccCCceEEE--EeeEEEEeecccCCCeeEEEEEE
Q psy3045 28 PGGESFALLCEAQE------NMWFKFIEGSS-----------RKVAVPLNDRVKQ--VSGTLIIKEAKVEDSGKYLCVVN 88 (267)
Q Consensus 28 ~~g~~v~l~C~~~~------~~W~~~~~~~~-----------~~~~~~~~~~~~~--~~~~l~i~~~~~~d~G~Y~C~~~ 88 (267)
..|++|+|.|.... +.|++...... ......+..|+.. .+.+|.|.+++.+|+|.|.|.+.
T Consensus 2 ~~G~sVtL~c~~~~~~~~~~v~W~~~~~~~i~~~~~~~~~~~~~~~~~f~~R~~~~~~~~sL~I~~~~~~DsG~Y~c~v~ 81 (97)
T cd05775 2 ILGGSVTLPLNIPDGTEIESITWSFNTSLAIITPGEETAPEIIVTDPSYKERVNFSQNDYSLQISNLKMEDAGSYRAEIN 81 (97)
T ss_pred ccCCeEEEeCCCCCCcEEEEEEEecCCEeEEEecCCCCCCccEEeCCCceeeEEecCCceeEEECCCchHHCEEEEEEEE
Confidence 47999999998753 99998521110 0011122334443 34689999999999999999999
Q ss_pred cCCCc-cEEEEEEEE
Q psy3045 89 NSVGG-ESVETVLTV 102 (267)
Q Consensus 89 ~~~~~-~~~~~~l~V 102 (267)
...+. ....+.|.|
T Consensus 82 ~~~~~~~~~~f~L~v 96 (97)
T cd05775 82 TKNGVTITKEFTLHI 96 (97)
T ss_pred cCCCCeEEEEEEEEe
Confidence 87755 355555554
No 248
>cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen
Probab=98.70 E-value=2.3e-07 Score=60.67 Aligned_cols=75 Identities=28% Similarity=0.429 Sum_probs=53.0
Q ss_pred CCeEEEEEEec------c------eeeeecccC--c-ce----------eccccCCceEEE-------EeeEEEEeeccc
Q psy3045 30 GESFALLCEAQ------E------NMWFKFIEG--S-SR----------KVAVPLNDRVKQ-------VSGTLIIKEAKV 77 (267)
Q Consensus 30 g~~v~l~C~~~------~------~~W~~~~~~--~-~~----------~~~~~~~~~~~~-------~~~~l~i~~~~~ 77 (267)
|++|+|.|.+. . +.|.+...+ . .. .....+..|+.. .+.+|.|.+++.
T Consensus 2 ~~~v~LpC~~~~~p~~~~~~~~~~I~W~k~~~~~~~~~~~v~v~~~~~~~~~~~y~gRvsl~~~~~~~~~asL~i~nv~~ 81 (110)
T cd05902 2 SSSVLLPCVFTLPPSASSPPEGPRIKWTKLRPASGQKQRPVLVARDNVVRVAKAFQGRVSLPGYPKNRYNASLVLSRLRY 81 (110)
T ss_pred CCcEEEeeEEEcCccccCCCCCCEEEEEEeCCCCCceEEEEEECCCCcEEEchhcccEEEeecCCCCCceEEEEECCCCH
Confidence 78999999944 1 899885211 1 10 111234455554 346899999999
Q ss_pred CCCeeEEEEEEcCCCccEEEEEEEEEe
Q psy3045 78 EDSGKYLCVVNNSVGGESVETVLTVTA 104 (267)
Q Consensus 78 ~d~G~Y~C~~~~~~~~~~~~~~l~V~~ 104 (267)
+|+|.|+|.+.......+..+.|.|.+
T Consensus 82 ~D~G~Y~C~v~~g~~~~~~~v~L~V~g 108 (110)
T cd05902 82 SDSGTYRCEVVLGINDEQDTVPLEVTG 108 (110)
T ss_pred HHCEEEEEEEEECCcccEEEEEEEEEE
Confidence 999999999998776678888888764
No 249
>cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins. Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult
Probab=98.69 E-value=2.4e-07 Score=59.92 Aligned_cols=71 Identities=32% Similarity=0.518 Sum_probs=47.7
Q ss_pred eEEEEEEecc--------eeeeecccCcce-ecc-----------ccCCceEEEE------eeEEEEeecccCCCeeEEE
Q psy3045 32 SFALLCEAQE--------NMWFKFIEGSSR-KVA-----------VPLNDRVKQV------SGTLIIKEAKVEDSGKYLC 85 (267)
Q Consensus 32 ~v~l~C~~~~--------~~W~~~~~~~~~-~~~-----------~~~~~~~~~~------~~~l~i~~~~~~d~G~Y~C 85 (267)
+|+|.|.... +.|++...+... ... ..+.+|.... +.+|.|.+++.+|+|.|+|
T Consensus 2 ~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~~Rv~f~~~~~~~~~sL~I~nv~~sD~GtY~C 81 (100)
T cd05888 2 DTRLPCRYNVSDGETVVQVLWIRENAGGVEEEIALLHFKYGQTEFHAYEGRVRFETPNPIADGALILRNAVQADEGKYKC 81 (100)
T ss_pred CEEEEeEEecCCCCcEEEEEEEEccCCCCcEEEEEEeccCCcccCCCccCcEEEeCCCCCCceEEEEecCccccceEEEE
Confidence 6899998764 899985333110 000 0122444432 4589999999999999999
Q ss_pred EEEc-CCCccEEEEEEEE
Q psy3045 86 VVNN-SVGGESVETVLTV 102 (267)
Q Consensus 86 ~~~~-~~~~~~~~~~l~V 102 (267)
.+.+ +.|..+..+.|.|
T Consensus 82 ~v~~~p~g~~~~~~~L~V 99 (100)
T cd05888 82 RVITFPAGNFEAELVLTV 99 (100)
T ss_pred EEEeCCCCCeeeEEEEEe
Confidence 9986 6666666666665
No 250
>cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=98.68 E-value=6e-08 Score=63.62 Aligned_cols=68 Identities=24% Similarity=0.409 Sum_probs=46.9
Q ss_pred eeEEecCCCeEEEEEEecc------eeeeecccCcceeccc--------cCCceEEE----EeeEEEEeecccCCCeeEE
Q psy3045 23 IRFKKPGGESFALLCEAQE------NMWFKFIEGSSRKVAV--------PLNDRVKQ----VSGTLIIKEAKVEDSGKYL 84 (267)
Q Consensus 23 ~~~~v~~g~~v~l~C~~~~------~~W~~~~~~~~~~~~~--------~~~~~~~~----~~~~l~i~~~~~~d~G~Y~ 84 (267)
..+.+.+|++|+|.|.+.+ +.|++...+....... ....++.. ....|.|.+++.+|+|.|.
T Consensus 8 ~~~~v~~G~~v~L~C~~~~~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~~~~~Dsg~Y~ 87 (106)
T cd04980 8 ATLSVSPGESATISCKASQSVSSNYLAWYQQKPGQAPKLLIYGASTLASGTPSRFSGSGSGTDFTLTISRVEPEDAAVYY 87 (106)
T ss_pred CcEEECCCCCEEEEEEECCCCCCCcEEEEEECCCCCcEEEEECccccCCCCCCCEEEeccCCEEEEEECCCChHHCEEEE
Confidence 6789999999999999753 9999864332211100 01123332 2347999999999999999
Q ss_pred EEEEcC
Q psy3045 85 CVVNNS 90 (267)
Q Consensus 85 C~~~~~ 90 (267)
|.+.+.
T Consensus 88 Ca~~~~ 93 (106)
T cd04980 88 CQQYGT 93 (106)
T ss_pred EEEeCC
Confidence 998653
No 251
>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.
Probab=98.66 E-value=5.4e-07 Score=57.20 Aligned_cols=81 Identities=20% Similarity=0.257 Sum_probs=58.0
Q ss_pred eeEEecCCCeEEEEEEecc------eeeeecccCcceeccccCCceE---EEEeeEEEEeecccCCCeeEEEEEEcCCCc
Q psy3045 23 IRFKKPGGESFALLCEAQE------NMWFKFIEGSSRKVAVPLNDRV---KQVSGTLIIKEAKVEDSGKYLCVVNNSVGG 93 (267)
Q Consensus 23 ~~~~v~~g~~v~l~C~~~~------~~W~~~~~~~~~~~~~~~~~~~---~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~ 93 (267)
..+.|.+|+++.|.|.+.+ +.|.+++.............+. ..-.+.|++.++..+|.|.|+|.+.|....
T Consensus 11 ~~~~v~~gE~~~L~V~ieAYP~p~~~~W~~~~~~l~~~~~~~~~~~~~~~~rY~S~L~L~Rlk~~E~G~YTf~a~N~~~~ 90 (101)
T cd05860 11 TTIFVNAGENLDLIVEYEAYPKPEHQQWIYMNRTLTNTSDHYVKSRNESNNRYVSELHLTRLKGTEGGTYTFLVSNSDAS 90 (101)
T ss_pred ceEEEECCCCEEEEEEEEeCCCCeeeEEEcCCcccCccccceeEEeccCceEEEEEEEEeecChhhCcEEEEEEECCCCe
Confidence 4678999999999999999 7999864422111111111110 012357999999999999999999999888
Q ss_pred cEEEEEEEEE
Q psy3045 94 ESVETVLTVT 103 (267)
Q Consensus 94 ~~~~~~l~V~ 103 (267)
.+..+.|.|.
T Consensus 91 ~s~tF~l~v~ 100 (101)
T cd05860 91 ASVTFNVYVN 100 (101)
T ss_pred EEEEEEEEEe
Confidence 8777777663
No 252
>cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins. Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes.
Probab=98.66 E-value=4.4e-07 Score=57.76 Aligned_cols=69 Identities=22% Similarity=0.270 Sum_probs=46.5
Q ss_pred CeEEEEEEecc------eeeeecccCcceec-----------cccCCceEEEE-----eeEEEEeecccCCCeeEEEEEE
Q psy3045 31 ESFALLCEAQE------NMWFKFIEGSSRKV-----------AVPLNDRVKQV-----SGTLIIKEAKVEDSGKYLCVVN 88 (267)
Q Consensus 31 ~~v~l~C~~~~------~~W~~~~~~~~~~~-----------~~~~~~~~~~~-----~~~l~i~~~~~~d~G~Y~C~~~ 88 (267)
++++|.|.... +.|.|..++..... ...+.+|+... +.+|.|.+++.+|+|.|+|.+.
T Consensus 1 ~~vtL~C~~~~~~~~~qV~W~k~~~~~~~~iavy~~~~g~~~~~~y~~Rv~f~~~~~~d~sI~i~nvt~~D~G~Y~C~~~ 80 (96)
T cd05889 1 EKMKLECVYPKTGVLIQVSWTKHNGSHKENIAVYHPIYGMHIEDKYRGRVYFLNSTREDMSLSFNNATEEDVGLYCCSLV 80 (96)
T ss_pred CCEEEEeEcCCCCcEEEEEEEEcCCCCCceEEEEECCCCCEECccccCeEEEecCCCCccEEEEcCCCcccCEEEEEEEE
Confidence 46899999876 88998533211111 11234565543 4689999999999999999996
Q ss_pred -cCCCccEEEEE
Q psy3045 89 -NSVGGESVETV 99 (267)
Q Consensus 89 -~~~~~~~~~~~ 99 (267)
.+.|.....+.
T Consensus 81 t~P~g~~~~~i~ 92 (96)
T cd05889 81 TYPQGSWEKVIE 92 (96)
T ss_pred eCCCCCeEEEEE
Confidence 45665555444
No 253
>cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA
Probab=98.65 E-value=5.4e-07 Score=59.14 Aligned_cols=75 Identities=24% Similarity=0.376 Sum_probs=53.9
Q ss_pred CCeEEEEEEec-----------c-----eeeeecc---cCc---ce----------eccccCCceEEE-------EeeEE
Q psy3045 30 GESFALLCEAQ-----------E-----NMWFKFI---EGS---SR----------KVAVPLNDRVKQ-------VSGTL 70 (267)
Q Consensus 30 g~~v~l~C~~~-----------~-----~~W~~~~---~~~---~~----------~~~~~~~~~~~~-------~~~~l 70 (267)
|++++|.|.+. . +.|++-. ++. .. .....+..|... .+.+|
T Consensus 2 ~g~v~LPC~f~~~p~~p~~~~~~~~~~rIkW~~~~~~~~g~~~~e~~Vlv~~~g~~~~~~~y~gRv~l~~~~~~~g~asL 81 (117)
T cd05901 2 SGSVVLPCRFSTLPTLPPSVITTSEFLRIKWTKIEVDKNGKDHKETTVLVAQNGIIKIGQEYMGRVSVPSHPEDQGDASL 81 (117)
T ss_pred CCCEEEeeEEEecCCCCCcccCCCCCcEEEEEEecccccccCCCccEEEEEECCEEEECCcccCcEEeeccCCcCCceEE
Confidence 67899999987 1 8998841 111 01 111234445554 35689
Q ss_pred EEeecccCCCeeEEEEEEcCCCccEEEEEEEEEe
Q psy3045 71 IIKEAKVEDSGKYLCVVNNSVGGESVETVLTVTA 104 (267)
Q Consensus 71 ~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~V~~ 104 (267)
.|.+++.+|+|.|.|.+.+........+.|.|.+
T Consensus 82 ~i~~v~~sD~G~Y~C~V~~g~~~~~~~v~L~V~G 115 (117)
T cd05901 82 TIVKLRASDAGVYRCEVMHGIEDTQDTVSLDVSG 115 (117)
T ss_pred EEcccccccCEEEEEEEEECCcccEEEEEEEEEE
Confidence 9999999999999999999887788888888864
No 254
>cd00099 IgV Immunoglobulin variable domain (IgV). IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=98.65 E-value=1.5e-07 Score=61.69 Aligned_cols=67 Identities=31% Similarity=0.452 Sum_probs=47.5
Q ss_pred EecCCCeEEEEEEecc------eeeeecccCcceec-----------cccCCceEEE------EeeEEEEeecccCCCee
Q psy3045 26 KKPGGESFALLCEAQE------NMWFKFIEGSSRKV-----------AVPLNDRVKQ------VSGTLIIKEAKVEDSGK 82 (267)
Q Consensus 26 ~v~~g~~v~l~C~~~~------~~W~~~~~~~~~~~-----------~~~~~~~~~~------~~~~l~i~~~~~~d~G~ 82 (267)
.+.+|++++|.|.+.. +.|++...+..... ......|+.. ...+|.|.+++.+|+|.
T Consensus 2 ~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~~D~G~ 81 (105)
T cd00099 2 SVSEGESVTLSCTYSGSFSSYYIFWYRQKPGKGPELLIYISSNGSQYAGGVKGRFSGTRDSSKSSFTLTISSLQPEDSAV 81 (105)
T ss_pred eecCCCCEEEEEEEeCCcCcceEEEEEECCCCCCEEEEEEeCCCCccCccCCCcEEEEEeccCCEEEEEECCCCHHHCEE
Confidence 6789999999998875 99999643211110 1122344432 23589999999999999
Q ss_pred EEEEEEcCCC
Q psy3045 83 YLCVVNNSVG 92 (267)
Q Consensus 83 Y~C~~~~~~~ 92 (267)
|.|.+.+..+
T Consensus 82 Y~C~v~~~~~ 91 (105)
T cd00099 82 YYCAVSLSGG 91 (105)
T ss_pred EEEEEecCCC
Confidence 9999987654
No 255
>cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain. IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=98.65 E-value=1.3e-07 Score=62.46 Aligned_cols=68 Identities=28% Similarity=0.437 Sum_probs=48.7
Q ss_pred eeEEecCCCeEEEEEEecc----eeeeecccCcceecc------------ccCCceEEE-----EeeEEEEeecccCCCe
Q psy3045 23 IRFKKPGGESFALLCEAQE----NMWFKFIEGSSRKVA------------VPLNDRVKQ-----VSGTLIIKEAKVEDSG 81 (267)
Q Consensus 23 ~~~~v~~g~~v~l~C~~~~----~~W~~~~~~~~~~~~------------~~~~~~~~~-----~~~~l~i~~~~~~d~G 81 (267)
..+.+.+|++|+|.|.+.+ +.|+|...+...... .....|+.. ...+|.|.+++.+|+|
T Consensus 6 ~~~~v~~G~~v~l~C~~~~~~~~v~Wykq~~g~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~~~~~Dsg 85 (110)
T cd05899 6 RYLIKGRGQSVTLRCSQTSGHDNMYWYRQDPGKGLQLLFYSNGGSLNEEEGDPKDRFSASRPSLTRSSLTIKSAEPEDSA 85 (110)
T ss_pred CceEEcCCCcEEEEEEECCCCCEEEEEEECCCCCcEEEEEEcCCCceEecCccCCceEEECcCCCccEEEECCCChhhCE
Confidence 6789999999999999876 999997543211110 001233322 2357999999999999
Q ss_pred eEEEEEEcC
Q psy3045 82 KYLCVVNNS 90 (267)
Q Consensus 82 ~Y~C~~~~~ 90 (267)
.|.|.+.+.
T Consensus 86 ~Y~Ca~~~~ 94 (110)
T cd05899 86 VYLCASSLG 94 (110)
T ss_pred EEEEEeeCC
Confidence 999999764
No 256
>cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D
Probab=98.64 E-value=3.3e-07 Score=59.44 Aligned_cols=61 Identities=15% Similarity=0.230 Sum_probs=46.3
Q ss_pred EEecCCCEEEEeEeCCCCCceEEEEECCccCCC-------------------------CCCCeEEeccCCCCCCeEEEEE
Q psy3045 145 TIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPD-------------------------HNEPVFRIDSVRKEDKGMYQCV 199 (267)
Q Consensus 145 ~~~~g~~v~l~C~~~~~p~~~~~W~~~~~~~~~-------------------------~~~~~l~i~~~~~~d~g~y~C~ 199 (267)
.+.+|+++.|.|.........+.|+|+...... ..+++|.|++++.+|+|.|+|.
T Consensus 9 ~~~~G~~V~L~v~~~p~~~~~~~W~kg~~~~~~~~I~~y~~~~~~~~~gp~~~gR~~~~~ngSL~I~~v~~~D~G~Y~~~ 88 (105)
T cd05774 9 QVAEGENVLLLVHNLPENLLAYAWYKGKTVSPNFLIASYIISTNSSTPGPAYSGRETIYPNGSLLIQNVTQKDTGFYTLQ 88 (105)
T ss_pred cccCCCCEEEEecCCCCCceEEEEEcCCCCCCCEEEEEEECCCcccccCcccCCcEEEeCCCcEEEecCCcccCEEEEEE
Confidence 677899999999754444559999996322100 1246899999999999999999
Q ss_pred EEcCCC
Q psy3045 200 IRNEQE 205 (267)
Q Consensus 200 ~~~~~~ 205 (267)
+.+...
T Consensus 89 v~~~~~ 94 (105)
T cd05774 89 TITTNF 94 (105)
T ss_pred EEeCCc
Confidence 998763
No 257
>cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain. IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=98.63 E-value=2.5e-07 Score=61.79 Aligned_cols=67 Identities=24% Similarity=0.400 Sum_probs=48.3
Q ss_pred eeEEecCCCeEEEEEEecc------eeeeecccCcceecc--------ccCCceEEEE------eeEEEEeecccCCCee
Q psy3045 23 IRFKKPGGESFALLCEAQE------NMWFKFIEGSSRKVA--------VPLNDRVKQV------SGTLIIKEAKVEDSGK 82 (267)
Q Consensus 23 ~~~~v~~g~~v~l~C~~~~------~~W~~~~~~~~~~~~--------~~~~~~~~~~------~~~l~i~~~~~~d~G~ 82 (267)
..+.+.+|++|+|.|.+.. +.|++...+...... .....|+... ..+|.|.++..+|+|.
T Consensus 7 ~~v~~~~G~~v~L~C~~~~~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~~~~~Dsg~ 86 (116)
T cd07706 7 PDVSVQVGEEVTLNCRYETSWTNYYIFWYKQLPSGEMTFLIRQKSIYGNATKGRYSVNFQKAQKSISLTISALQLEDSAK 86 (116)
T ss_pred CceEEcCCCCEEEEEEEeCCCCceEEEEEEECCCCceEEEEEecCccCCccCCeEEEEEeccCCEEEEEECCCCHHHCEE
Confidence 6788999999999999754 999996433221110 1223455432 3579999999999999
Q ss_pred EEEEEEc
Q psy3045 83 YLCVVNN 89 (267)
Q Consensus 83 Y~C~~~~ 89 (267)
|.|.+..
T Consensus 87 Y~C~~~~ 93 (116)
T cd07706 87 YFCALST 93 (116)
T ss_pred EEEEEEC
Confidence 9999985
No 258
>PHA03270 envelope glycoprotein C; Provisional
Probab=98.62 E-value=3.7e-05 Score=60.69 Aligned_cols=155 Identities=16% Similarity=0.254 Sum_probs=93.2
Q ss_pred EEEEeecccCCCeeEEEEEEcCCCccEEEEEEEEE--eccccccCCceEEEeCCCceEEEEEeecCCCcccccCCceEEE
Q psy3045 69 TLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTVT--APLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTI 146 (267)
Q Consensus 69 ~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~V~--~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~ 146 (267)
.|.|..++...+|.|+=...+..+.......++|. ..+...+.+. .+
T Consensus 183 ~L~I~slt~aTeGvY~Wr~~~~~~~~~~~~~VtV~~yr~Psvsv~~~-------------------------------Pv 231 (466)
T PHA03270 183 RLVIQELTLATQGMYYWARGPADRPHRYGTWTRVRMFRRPSLSIRPH-------------------------------AV 231 (466)
T ss_pred eEEEEEcccccceEEEEEEecCCCceeeeeEEEEEEecCCcccccCC-------------------------------cc
Confidence 49999999999999999987766654444444444 4444333332 56
Q ss_pred ecCCCEEEEeEeCCC-C--CceEEEEECCccCCCC-----------C----CCeEEeccCCCC-CCeEEEEEEEcCCCCc
Q psy3045 147 DFGRPAQFTCKYEGN-P--VKTISWMKDGKPVPDH-----------N----EPVFRIDSVRKE-DKGMYQCVIRNEQESA 207 (267)
Q Consensus 147 ~~g~~v~l~C~~~~~-p--~~~~~W~~~~~~~~~~-----------~----~~~l~i~~~~~~-d~g~y~C~~~~~~~~~ 207 (267)
..|+...-.|.+..+ | ...+.||+|+.++... + .+++++...... ..-..+|.+...-...
T Consensus 232 L~Ge~Y~AtC~va~YYPp~Sv~lrWf~ng~~V~~~~~i~~~~~~~~dGfs~vStvtsea~~~~~~PPsLrC~v~W~rd~v 311 (466)
T PHA03270 232 LEGEPFGATCVAANYYPGDRAAFRWFEGGDEVFAPERVRTRVDAQRDGFSATSTLTSEARAGLAPPRNLTCEFTWHRDSV 311 (466)
T ss_pred ccCCCceEEEEeeeecCCCceEEEEEeCCccccCcceeeeeeEecCCCeeEEEEEeccccccCCCCCCceEEEEEccCCc
Confidence 679999999998775 4 3389999999887421 1 123333332221 2237899998654433
Q ss_pred -eEEEEEEEe-cccCCCeeecCCceeEEecCCcEEEEEEeecCCC-CcEEEEECCEEc
Q psy3045 208 -QASGELKLG-GRFDPPVIKESFSDETLNPGPNYYFKCIASGNPT-PEISWYLDGKKL 262 (267)
Q Consensus 208 -~~~~~l~v~-~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~-~~i~W~~~~~~l 262 (267)
.+++.-.+. ..+.+|.+.+ .+..|.. .|++...|. ..+.|+-++...
T Consensus 312 S~sR~nAa~~P~VY~~P~Isv-----~F~dG~A---VCtA~CVPegV~l~W~V~D~~~ 361 (466)
T PHA03270 312 SFSRRNATGAPTVLPRPTIEM-----EFGGDEA---VCTAACVPEGVTLAWLLGADPA 361 (466)
T ss_pred cceeecccccCccccCCeEEE-----EEeCCEE---EEeccccCCCCEEEEEecCCCC
Confidence 222222211 1123444443 3333433 388887776 389999776444
No 259
>PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A ....
Probab=98.61 E-value=5.7e-07 Score=59.72 Aligned_cols=80 Identities=28% Similarity=0.375 Sum_probs=53.5
Q ss_pred eeEEecCCCeEEEEEEec-c-----eeeeecccCcceecc-------------ccCCceEEE-E-----eeEEEEeeccc
Q psy3045 23 IRFKKPGGESFALLCEAQ-E-----NMWFKFIEGSSRKVA-------------VPLNDRVKQ-V-----SGTLIIKEAKV 77 (267)
Q Consensus 23 ~~~~v~~g~~v~l~C~~~-~-----~~W~~~~~~~~~~~~-------------~~~~~~~~~-~-----~~~l~i~~~~~ 77 (267)
..+.+.+|+++.|.|... . +.|++...+...... .....+... . ..+|.|.+++.
T Consensus 9 ~~v~~~~G~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~i~~l~~ 88 (114)
T PF07686_consen 9 SPVTVQEGESVTLPCSYSSSSNQSSVYWYRQSPGQGPQLIIRYSLSSTNETPTPSYSGRFTFSGNGSQNNFSLTIKNLQP 88 (114)
T ss_dssp SEEEEETTSEEEEEEEEESSSSGSEEEEEEEETTSEEEEEEEEETTEEEEEEETTETTTEEEEEETTTTEEEEEESSESG
T ss_pred CeEEEecCCCEEEEEEEeCCCCcceEEEEEECccccceeeeeeccceeeeccccceeeeeeeeecccCCeEEEEECCCCc
Confidence 678999999999999999 4 999996432211111 112223322 1 24799999999
Q ss_pred CCCeeEEEEEEcCCCc-cEEEEEEEE
Q psy3045 78 EDSGKYLCVVNNSVGG-ESVETVLTV 102 (267)
Q Consensus 78 ~d~G~Y~C~~~~~~~~-~~~~~~l~V 102 (267)
+|+|.|.|.+...... ....+.|.|
T Consensus 89 ~DsG~Y~C~v~~~~~~~~~~~~~L~V 114 (114)
T PF07686_consen 89 SDSGTYFCQVSTSNEQSFGNGTKLTV 114 (114)
T ss_dssp GGEEEEEEEEEESSEEEEEEEEEEEE
T ss_pred CcCEEEEEEEEECCCCEECCcEEEEC
Confidence 9999999999876222 344444443
No 260
>cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins. IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=98.60 E-value=5e-07 Score=59.59 Aligned_cols=64 Identities=14% Similarity=0.400 Sum_probs=49.0
Q ss_pred CceEEEecCCCEEEEeEeCCCCCceEEEEECCcc--C-------------C----------CCCCCeEEeccCCCCCCeE
Q psy3045 141 PTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKP--V-------------P----------DHNEPVFRIDSVRKEDKGM 195 (267)
Q Consensus 141 ~~~~~~~~g~~v~l~C~~~~~p~~~~~W~~~~~~--~-------------~----------~~~~~~l~i~~~~~~d~g~ 195 (267)
+....+.+|++++|.|...+.+...+.|++.... . . ......|.|.+++.+|+|.
T Consensus 5 ~~~v~~~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~DsG~ 84 (109)
T cd04983 5 PQSLSVQEGENVTLNCNYSTSTFYYLFWYRQYPGQGPQFLIYISSNGEEKEKGRFSATLDKSRKSSSLHISAAQLSDSAV 84 (109)
T ss_pred CCceEEcCCCCEEEEEEECCCCccEEEEEEECCCCCeEEEEEEecCCCcccCCcEEEEEcccCCEEEEEECCCCHHHCEE
Confidence 3445888999999999988777779999985321 0 0 0124579999999999999
Q ss_pred EEEEEEcCC
Q psy3045 196 YQCVIRNEQ 204 (267)
Q Consensus 196 y~C~~~~~~ 204 (267)
|.|.+.+..
T Consensus 85 Y~C~~~~~~ 93 (109)
T cd04983 85 YFCALSESG 93 (109)
T ss_pred EEEEEecCC
Confidence 999998754
No 261
>cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=98.60 E-value=3.3e-07 Score=58.13 Aligned_cols=66 Identities=23% Similarity=0.243 Sum_probs=46.2
Q ss_pred eEEecCCCeEEEEEEe------cc----eeeeecccCcceeccccCCceEEE--EeeEEEEeecccCCCeeEEEEEEcCC
Q psy3045 24 RFKKPGGESFALLCEA------QE----NMWFKFIEGSSRKVAVPLNDRVKQ--VSGTLIIKEAKVEDSGKYLCVVNNSV 91 (267)
Q Consensus 24 ~~~v~~g~~v~l~C~~------~~----~~W~~~~~~~~~~~~~~~~~~~~~--~~~~l~i~~~~~~d~G~Y~C~~~~~~ 91 (267)
...+.+|.+..|.|.- .. ++|+|++.... ....++.. ....|.|.++..+|+|.|+|.+.+..
T Consensus 4 ~~~~~~~~~~~l~Cp~~~~f~~~~~~~~v~WYKd~~~l~-----~~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~~~~~~ 78 (95)
T cd05897 4 PQILFTSTSGKLVCPDLSDFTINRTDVELQWYKDSVLLD-----KDNEKFYSLKGSTYLHIIDVSLNDSGYYTCKLQFTH 78 (95)
T ss_pred eeEeccccCcEEECCCHHHcccCCCCCcEEEccCCEECc-----CCCcceEecCCCCEEEEEEcChhhCEEEEEEEEEee
Confidence 4567889999999962 11 99999742110 01122222 23579999999999999999999987
Q ss_pred Ccc
Q psy3045 92 GGE 94 (267)
Q Consensus 92 ~~~ 94 (267)
++.
T Consensus 79 ~g~ 81 (95)
T cd05897 79 EGK 81 (95)
T ss_pred CCE
Confidence 664
No 262
>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0). Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.
Probab=98.60 E-value=8e-07 Score=58.85 Aligned_cols=70 Identities=16% Similarity=0.375 Sum_probs=46.0
Q ss_pred eEEEecCCCEEEEeEeCCC----CCceEEEEE---------------CCccCC----------------CCCCCeEEecc
Q psy3045 143 VQTIDFGRPAQFTCKYEGN----PVKTISWMK---------------DGKPVP----------------DHNEPVFRIDS 187 (267)
Q Consensus 143 ~~~~~~g~~v~l~C~~~~~----p~~~~~W~~---------------~~~~~~----------------~~~~~~l~i~~ 187 (267)
...+..|+.+.|.|..... +...+.|.+ +|.... .....+|.|.+
T Consensus 7 ev~a~~G~~v~L~C~f~~~~~~~~~~~v~W~~~~~~~~~~~~v~~y~~g~~~~~~~~~f~~Rv~f~g~~~~~daSI~I~n 86 (116)
T cd05879 7 EVYGTVGSDVTLSCSFWSSEWISDDISFTWHYQPDGSRDAISIFHYGKGQPYIDDVGPFKERIEWVGNPSRKDGSIVIHN 86 (116)
T ss_pred eEEEEcCCcEEEEEEEecCCCCCCcEEEEEEEcCCCCCccEEEEEeCCCceecccccCccCceEEeCCCCcCeeEEEEcc
Confidence 3366678888888886542 245788832 332221 01346799999
Q ss_pred CCCCCCeEEEEEEEcCCCCceEEEE
Q psy3045 188 VRKEDKGMYQCVIRNEQESAQASGE 212 (267)
Q Consensus 188 ~~~~d~g~y~C~~~~~~~~~~~~~~ 212 (267)
++.+|.|+|+|.+.|..........
T Consensus 87 v~~sD~G~Y~C~v~n~p~~~~~~~~ 111 (116)
T cd05879 87 LDYTDNGTFTCDVKNPPDIVGKSSQ 111 (116)
T ss_pred CCcccCEEEEEEEEcCCCcCCceeE
Confidence 9999999999999987654333333
No 263
>cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins. Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue.
Probab=98.59 E-value=8.4e-07 Score=58.18 Aligned_cols=38 Identities=29% Similarity=0.510 Sum_probs=31.5
Q ss_pred CCCeEEeccCCCCCCeEEEEEEEcCCCCceEEEEEEEe
Q psy3045 179 NEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLG 216 (267)
Q Consensus 179 ~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v~ 216 (267)
...+|.|.+++.+|+|.|.|.+.+..+.......|.|.
T Consensus 66 ~~~sL~I~~v~~sD~G~Y~C~v~~~~~~~~~~v~L~V~ 103 (106)
T cd05714 66 GDASLVITDLRLEDSGRYRCEVIDGIEDEQDTVELEVR 103 (106)
T ss_pred CcceEEECCCCHHHCEEEEEEEEcCCCceEEEEEEEEE
Confidence 35789999999999999999999876666666666665
No 264
>cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition.
Probab=98.58 E-value=6.3e-07 Score=54.91 Aligned_cols=55 Identities=16% Similarity=0.421 Sum_probs=40.4
Q ss_pred EEEEeEeCCC-CCceEEEEECCccCCCCC------------CCeEEeccCCCCCCeEEEEEEEcCCCC
Q psy3045 152 AQFTCKYEGN-PVKTISWMKDGKPVPDHN------------EPVFRIDSVRKEDKGMYQCVIRNEQES 206 (267)
Q Consensus 152 v~l~C~~~~~-p~~~~~W~~~~~~~~~~~------------~~~l~i~~~~~~d~g~y~C~~~~~~~~ 206 (267)
+.|.|.+.|. |.+.|.||+++.++.... .+.|.+.....+|...|+|.|.|+.-.
T Consensus 2 ~~L~C~s~gSkP~A~I~W~k~~~~l~~~~~~~~~~~~~~t~~S~L~~~p~~eDdG~~~~C~a~~~~l~ 69 (82)
T cd05883 2 IELNCTAMASKPAATIRWFKGNKELTGKSTVEETWSRMFTVTSQLMLKVTKEDDGVPVICLVDHPAVK 69 (82)
T ss_pred EEEEEEecCCCCCCEEEEEECCEECcCcccceeccCCCcEEEEEEEEECchhhCCCEEEEEEcCcccC
Confidence 6799998865 888999999998775421 135666555555556999999997643
No 265
>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a
Probab=98.57 E-value=1.2e-06 Score=55.57 Aligned_cols=62 Identities=21% Similarity=0.352 Sum_probs=46.7
Q ss_pred ceEEEecCCCEEEEeEeCCCCCceEEEEECCccC---------C---------CCCCCeEEeccCCCCCCeEEEEEEEcC
Q psy3045 142 TVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPV---------P---------DHNEPVFRIDSVRKEDKGMYQCVIRNE 203 (267)
Q Consensus 142 ~~~~~~~g~~v~l~C~~~~~p~~~~~W~~~~~~~---------~---------~~~~~~l~i~~~~~~d~g~y~C~~~~~ 203 (267)
.+..+.+|+++.|.|.+.+.....+.|++-+..+ . .+...+|.|..++.+|+|.|.|.+...
T Consensus 5 ~nvtv~~G~ta~L~C~v~~~~~~~v~w~~~~~~~i~~~~~~~~~d~Rf~~~~~~~~~~tL~I~~vq~~D~G~Y~Cqv~t~ 84 (95)
T cd05881 5 EDVTVVEGEVAIISCRVKNNDDSVIQLLNPNRQTIYFRDVRPLKDSRFQLVNFSSNELRVSLSNVSLSDEGRYFCQLYTD 84 (95)
T ss_pred CceEEcCCCcEEEEEEEccCCccEEEEEecCCcEEEecCccccCCcCEEEEeCCCCEEEEEECcCCcccCEEEEEEEEcc
Confidence 3457889999999999988766667787654322 1 123356999999999999999999763
No 266
>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C ....
Probab=98.56 E-value=2.7e-08 Score=60.77 Aligned_cols=51 Identities=29% Similarity=0.667 Sum_probs=40.3
Q ss_pred EEEEeEeCCCC-CceEEEE------ECCccCCCCCCCeEEeccCCCCCCeEEEEEEEc
Q psy3045 152 AQFTCKYEGNP-VKTISWM------KDGKPVPDHNEPVFRIDSVRKEDKGMYQCVIRN 202 (267)
Q Consensus 152 v~l~C~~~~~p-~~~~~W~------~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~ 202 (267)
+.|.|.+.+.+ .+.+.|+ .............|.+..+..+|.|.|+|.|.|
T Consensus 18 ~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~L~i~~v~~~~~g~y~C~a~N 75 (75)
T PF13927_consen 18 VTLTCSAEGGPPPPSISWYDSNPSFNSNSRGSSSSNSTLTISNVTRSDNGTYTCIASN 75 (75)
T ss_dssp EEEEEEESSEESSEEEEEETEEEEEEEEEEEEEEEEEEEEESSCCGGGTEEEEEEEEE
T ss_pred EEEEEEEccccCCeEEEEEecCCceeeeeeeccceeeEEEEccCCHHhCcEEEEEEEC
Confidence 99999999887 8899999 111111223457899999999999999999986
No 267
>cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain. IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=98.56 E-value=1.9e-07 Score=60.33 Aligned_cols=64 Identities=25% Similarity=0.507 Sum_probs=44.2
Q ss_pred EecCCCeEEEEEEecc-------eeeeecccCcceeccc--------cCCceEEE----EeeEEEEeecccCCCeeEEEE
Q psy3045 26 KKPGGESFALLCEAQE-------NMWFKFIEGSSRKVAV--------PLNDRVKQ----VSGTLIIKEAKVEDSGKYLCV 86 (267)
Q Consensus 26 ~v~~g~~v~l~C~~~~-------~~W~~~~~~~~~~~~~--------~~~~~~~~----~~~~l~i~~~~~~d~G~Y~C~ 86 (267)
.+.+|++|+|.|.+.. +.|++...+.....-. ....|+.. ....|.|.+++.+|+|.|.|.
T Consensus 2 ~v~~G~~v~l~C~~~~~~~~~~~i~Wy~q~~g~~~~~l~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~~Dsg~Y~C~ 81 (98)
T cd04984 2 SVSPGETVTITCTGSSGNISGNYVNWYQQKPGSAPRYLIYEDSDRPSGIPDRFSGSKSGNTASLTISGAQTEDEADYYCQ 81 (98)
T ss_pred ccCCCCCEEEEEEEcCCCcCCCCEEEEEECCCCCccEEEEeccccCCCCCCCEEEEccCCEEEEEECCCChhhCEEEEEE
Confidence 5789999999998743 9999864432211100 11223332 235799999999999999999
Q ss_pred EEc
Q psy3045 87 VNN 89 (267)
Q Consensus 87 ~~~ 89 (267)
+.+
T Consensus 82 ~~~ 84 (98)
T cd04984 82 VWD 84 (98)
T ss_pred Ecc
Confidence 875
No 268
>cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP). Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=98.55 E-value=1.1e-06 Score=57.68 Aligned_cols=38 Identities=29% Similarity=0.508 Sum_probs=31.9
Q ss_pred CCeEEeccCCCCCCeEEEEEEEcCCCCceEEEEEEEec
Q psy3045 180 EPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLGG 217 (267)
Q Consensus 180 ~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v~~ 217 (267)
..+|.|.+++.+|+|.|.|.+.+..+.....+.|.|..
T Consensus 67 ~~sL~I~~v~~~DsG~Y~C~v~~~~~~~~~~~~l~v~~ 104 (106)
T cd05877 67 DASLVITDLRLEDYGRYRCEVIDGLEDESVVVALRLRG 104 (106)
T ss_pred cEEEEEccCChHHCEEEEEEEEecccceEEEEEEEEEE
Confidence 35799999999999999999999887777777777653
No 269
>cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain. IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=98.55 E-value=6.8e-07 Score=59.04 Aligned_cols=62 Identities=16% Similarity=0.348 Sum_probs=47.9
Q ss_pred CceEEEecCCCEEEEeEeCCCCCceEEEEECCc--cCC--------------------------CCCCCeEEeccCCCCC
Q psy3045 141 PTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGK--PVP--------------------------DHNEPVFRIDSVRKED 192 (267)
Q Consensus 141 ~~~~~~~~g~~v~l~C~~~~~p~~~~~W~~~~~--~~~--------------------------~~~~~~l~i~~~~~~d 192 (267)
+....+.+|++++|.|...+ +...+.|||... .+. ......|.|.+++.+|
T Consensus 5 p~~~~v~~G~~v~l~C~~~~-~~~~v~Wykq~~g~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~~~~~D 83 (110)
T cd05899 5 PRYLIKGRGQSVTLRCSQTS-GHDNMYWYRQDPGKGLQLLFYSNGGSLNEEEGDPKDRFSASRPSLTRSSLTIKSAEPED 83 (110)
T ss_pred CCceEEcCCCcEEEEEEECC-CCCEEEEEEECCCCCcEEEEEEcCCCceEecCccCCceEEECcCCCccEEEECCCChhh
Confidence 44558899999999999887 667899998532 110 0124679999999999
Q ss_pred CeEEEEEEEcC
Q psy3045 193 KGMYQCVIRNE 203 (267)
Q Consensus 193 ~g~y~C~~~~~ 203 (267)
+|.|.|.+.+.
T Consensus 84 sg~Y~Ca~~~~ 94 (110)
T cd05899 84 SAVYLCASSLG 94 (110)
T ss_pred CEEEEEEeeCC
Confidence 99999999764
No 270
>cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins. Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf
Probab=98.54 E-value=8.1e-07 Score=56.60 Aligned_cols=58 Identities=19% Similarity=0.316 Sum_probs=44.1
Q ss_pred CCCEEEEeEeCCCCCceEEEEECCccCCC------------------------CCCCeEEeccCCCCCCeEEEEEEEcCC
Q psy3045 149 GRPAQFTCKYEGNPVKTISWMKDGKPVPD------------------------HNEPVFRIDSVRKEDKGMYQCVIRNEQ 204 (267)
Q Consensus 149 g~~v~l~C~~~~~p~~~~~W~~~~~~~~~------------------------~~~~~l~i~~~~~~d~g~y~C~~~~~~ 204 (267)
|++|+|.|.........+.|+++...... ..+.+|.|.+++.+|+|.|.|.+....
T Consensus 1 G~~VtL~c~~~~~~~~~i~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~sL~I~~l~~~DsG~Y~c~v~~~~ 80 (92)
T cd05741 1 GESVTLPVSNLPENLQEITWYKGKDKSVEAEIASYIATNSTVFGPAYSGRETIYPNGSLLIQNLTKEDSGTYTLQIISTN 80 (92)
T ss_pred CCcEEEEcccCCCCCEEEEEECCCCCCcceEEEEEecCCceeECCCcCCeEEEcCCceEEEccCCchhcEEEEEEEEcCC
Confidence 67889999877666668999886533210 124789999999999999999998876
Q ss_pred CC
Q psy3045 205 ES 206 (267)
Q Consensus 205 ~~ 206 (267)
+.
T Consensus 81 ~~ 82 (92)
T cd05741 81 GV 82 (92)
T ss_pred Cc
Confidence 43
No 271
>cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=98.54 E-value=1.3e-06 Score=57.41 Aligned_cols=38 Identities=21% Similarity=0.485 Sum_probs=31.0
Q ss_pred CCCeEEeccCCCCCCeEEEEEEEcCCCCceEEEEEEEe
Q psy3045 179 NEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLG 216 (267)
Q Consensus 179 ~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v~ 216 (267)
...+|.|.+++.+|+|+|.|.+.+..........|.|.
T Consensus 72 ~~asL~I~nl~~sDsG~Y~C~V~~g~~~~~~~v~l~v~ 109 (112)
T cd05900 72 SDATLEITELRSNDSGTYRCEVMHGIEDNYDTVEVQVK 109 (112)
T ss_pred CCcEEEEeecccccCEEEEEEEecCCCCceeEEEEEEE
Confidence 46889999999999999999999876666666666654
No 272
>cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM).
Probab=98.54 E-value=1e-06 Score=57.13 Aligned_cols=36 Identities=33% Similarity=0.624 Sum_probs=29.1
Q ss_pred CCeEEeccCCCCCCeEEEEEEEcCCCCceEEEEEEE
Q psy3045 180 EPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKL 215 (267)
Q Consensus 180 ~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v 215 (267)
..+|.|.+++.+|+|.|+|.+.+..+..+..+.|.|
T Consensus 64 ~~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~~i~l~v 99 (100)
T cd05713 64 SVALRIHNVRASDEGLYTCFFQSDGFYEEATVELKV 99 (100)
T ss_pred cEEEEEEcCChhhCEEEEEEEecCCcEEEEEEEEEE
Confidence 357999999999999999999987766555555554
No 273
>cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG). Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi
Probab=98.51 E-value=1.8e-06 Score=56.79 Aligned_cols=37 Identities=24% Similarity=0.518 Sum_probs=31.3
Q ss_pred CCeEEeccCCCCCCeEEEEEEEcCCCCceEEEEEEEe
Q psy3045 180 EPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLG 216 (267)
Q Consensus 180 ~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v~ 216 (267)
..+|.|.+++.+|+|.|.|.+.......+....|.|.
T Consensus 71 ~asL~I~~l~~sD~G~Y~C~v~~~~~~~~~~v~l~V~ 107 (110)
T cd05878 71 DASLEISRLRSSDSGVYRCEVMHGIEDEQDTVPLEVT 107 (110)
T ss_pred cEEEEECCCChhhCEEEEEEEEeCCCcceEEEEEEEE
Confidence 4679999999999999999999876666777777765
No 274
>cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain. IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=98.50 E-value=7.8e-07 Score=59.39 Aligned_cols=67 Identities=18% Similarity=0.388 Sum_probs=47.2
Q ss_pred eeEEecCCCeEEEEEEecc-------eeeeecccCcceecc-------------ccCCceEEE------EeeEEEEeecc
Q psy3045 23 IRFKKPGGESFALLCEAQE-------NMWFKFIEGSSRKVA-------------VPLNDRVKQ------VSGTLIIKEAK 76 (267)
Q Consensus 23 ~~~~v~~g~~v~l~C~~~~-------~~W~~~~~~~~~~~~-------------~~~~~~~~~------~~~~l~i~~~~ 76 (267)
..+.+.+|++|+|.|.+.+ +.|++...+...... .....|+.. ....|.|.+++
T Consensus 6 ~~~~~~~G~~v~l~C~~~~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~ 85 (116)
T cd04982 6 LSITREESKSVTISCKVSGIDFSTTYIHWYRQKPGQALERLLYVSSTSTQRKLSGGTKNKFEARKDVGKSTSTLTIQNLE 85 (116)
T ss_pred CeEEeCCCCCEEEEEEEeCCCccccEEEEEEECCCCCCEEEEEEecCCCcEEeCcccCCCEEEEEECCCCEEEEEEEECC
Confidence 6788999999999998654 999996433221100 012234432 23579999999
Q ss_pred cCCCeeEEEEEEc
Q psy3045 77 VEDSGKYLCVVNN 89 (267)
Q Consensus 77 ~~d~G~Y~C~~~~ 89 (267)
.+|+|.|.|.+..
T Consensus 86 ~~Dsg~Y~C~~~~ 98 (116)
T cd04982 86 KEDSATYYCAYWE 98 (116)
T ss_pred HHHCEEEEEEEec
Confidence 9999999999964
No 275
>cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions.
Probab=98.50 E-value=1.2e-06 Score=56.56 Aligned_cols=67 Identities=21% Similarity=0.338 Sum_probs=46.8
Q ss_pred EEecCCCeEEEEEEecc------eeeeecccCcceec-------cccCCceEEEE------eeEEEEeecccCCCeeEEE
Q psy3045 25 FKKPGGESFALLCEAQE------NMWFKFIEGSSRKV-------AVPLNDRVKQV------SGTLIIKEAKVEDSGKYLC 85 (267)
Q Consensus 25 ~~v~~g~~v~l~C~~~~------~~W~~~~~~~~~~~-------~~~~~~~~~~~------~~~l~i~~~~~~d~G~Y~C 85 (267)
+.+.+|++|+|.|.... +.|++...+..... ......|+... ..+|+|.+++.+|+|.|.|
T Consensus 2 v~~~~G~~vtl~C~~~~~~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C 81 (98)
T cd05716 2 VTGELGGSVTIPCPYPPKNRSYEKYWCKWGSAGCCLIIVSEGSVQSQYEGRVSLTDDPDNGVFTVTLNQLRKEDAGWYWC 81 (98)
T ss_pred EEEEeCCeEEEEeeCCCCCCCcEeEeECCCCCCCCeEEECCCccccccCCCEEEEecCCCCEEEEEEcCCCHHHCEEEEE
Confidence 46889999999998764 89999643321111 11223444332 3579999999999999999
Q ss_pred EEEcCC
Q psy3045 86 VVNNSV 91 (267)
Q Consensus 86 ~~~~~~ 91 (267)
.+....
T Consensus 82 ~~~~~~ 87 (98)
T cd05716 82 GVGDDG 87 (98)
T ss_pred EcccCC
Confidence 997643
No 276
>cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11.
Probab=98.46 E-value=1.9e-06 Score=57.75 Aligned_cols=68 Identities=24% Similarity=0.337 Sum_probs=47.9
Q ss_pred eeEEecCCCeEEEEEEec---------c--eeeeecccCc---cee--------ccccCCceEEE------EeeEEEEee
Q psy3045 23 IRFKKPGGESFALLCEAQ---------E--NMWFKFIEGS---SRK--------VAVPLNDRVKQ------VSGTLIIKE 74 (267)
Q Consensus 23 ~~~~v~~g~~v~l~C~~~---------~--~~W~~~~~~~---~~~--------~~~~~~~~~~~------~~~~l~i~~ 74 (267)
..+.+.+|++|+|.|.+. . +.|++...+. ... .......|+.. .+.+|.|.+
T Consensus 7 ~~v~~~~G~~VtL~C~f~~~~~~~~~~~~~~~Wykq~~g~~~~~~~~~~~~~~~~~~~f~gR~~~~~~~~~~~~sL~I~~ 86 (119)
T cd05712 7 KSVSVQEGLCVLIPCSFSYPADWPVSNGVHGIWYKGHPYPKNRPPVATNNRSRLVHESTRGRFRLLGDLGKKNCSLLISD 86 (119)
T ss_pred CEEEEeccccEEEEEEeeCcccccCCCceEEEEEeCCCCCCCCCcEEEcCCCccccccccccEEEecCCCCCEEEEEEcc
Confidence 678999999999999765 1 8999974432 100 00122344433 235899999
Q ss_pred cccCCCeeEEEEEEcC
Q psy3045 75 AKVEDSGKYLCVVNNS 90 (267)
Q Consensus 75 ~~~~d~G~Y~C~~~~~ 90 (267)
++.+|+|.|.|.+...
T Consensus 87 l~~~Dsg~Y~C~~~~~ 102 (119)
T cd05712 87 AQPEDSGKYFFRVELG 102 (119)
T ss_pred CChhhCeEEEEEEEcC
Confidence 9999999999998764
No 277
>PHA03273 envelope glycoprotein C; Provisional
Probab=98.43 E-value=2.3e-05 Score=62.38 Aligned_cols=152 Identities=19% Similarity=0.241 Sum_probs=93.6
Q ss_pred EEEEeecccCCCeeEEEEEEcCCCccEEEEEEEEE--eccccccCCceEEEeCCCceEEEEEeecCCCcccccCCceEEE
Q psy3045 69 TLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTVT--APLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTI 146 (267)
Q Consensus 69 ~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~V~--~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~ 146 (267)
.|.|..++..++|.|+=.+.+..+.......+.|. .++...+.+. .+
T Consensus 199 ~LtI~sltaaTeGvYtWr~~~~n~t~~~~~~VtV~~yr~Psvsv~~~-------------------------------Pv 247 (486)
T PHA03273 199 PLTIKSVDWRTAGVYVWSLYAKNGTLVNSTSVTVSTYNAPLVDLSVH-------------------------------PS 247 (486)
T ss_pred ceEEEecchhhceEEEEEEecCCCceeeeeEEEEEEecCCcccccCC-------------------------------cc
Confidence 49999999999999986665655554444555553 4444333332 56
Q ss_pred ecCCCEEEEeEeCCC-C--CceEEEEECCccCCC-CC---------------CCeEEeccCC-CCCCeEEEEEEEcCCCC
Q psy3045 147 DFGRPAQFTCKYEGN-P--VKTISWMKDGKPVPD-HN---------------EPVFRIDSVR-KEDKGMYQCVIRNEQES 206 (267)
Q Consensus 147 ~~g~~v~l~C~~~~~-p--~~~~~W~~~~~~~~~-~~---------------~~~l~i~~~~-~~d~g~y~C~~~~~~~~ 206 (267)
.+|+...-.|.+..+ | ...+.|++|+.++.. .. .++|++.... ....-..+|.+...-..
T Consensus 248 L~Ge~y~A~C~aa~YYPp~Sv~~rWf~dg~~V~~~~~~~~~~~~~~~gl~T~vStlt~~~~~~~~~PP~lrC~v~W~rd~ 327 (486)
T PHA03273 248 LKGENYRAVCVVASYFPHSSVKLRWYKNAKEVDFTKYVTNASSVWVDGLITRISTLSIPVDPDEEYTPSLRCSIEWYRDE 327 (486)
T ss_pred ccCCCceEEEEeeeecCCCceEEEEEeCCeeccccccceeeEEEecCCceEEEEEEeccCcccCCCCCCceEEEEEccCC
Confidence 779999999998775 4 348999999998862 10 1234343322 23345789999875443
Q ss_pred ceE-EEEEEEe-cccCCCeeecCCceeEEecCCcEEEEEEeecCCC--CcEEEEECC
Q psy3045 207 AQA-SGELKLG-GRFDPPVIKESFSDETLNPGPNYYFKCIASGNPT--PEISWYLDG 259 (267)
Q Consensus 207 ~~~-~~~l~v~-~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~--~~i~W~~~~ 259 (267)
... .+.-.+. ..+.+|.+.+ .+..|+.+ |.+...|. ..+.|+-++
T Consensus 328 vS~~RfsAt~~P~Vy~~P~Is~-----~F~~G~AV---CtA~CVP~egV~l~W~v~D 376 (486)
T PHA03273 328 VSFARIAKAGTPSVFVAPTVSV-----TVEDGDAV---CTAKCVPSTGVFVSWSVND 376 (486)
T ss_pred cceeeccccccCccccCCeEEE-----EEeCCEEE---EecccccCCCeeEEEEccC
Confidence 322 2111111 1123444443 33344443 99998877 589999766
No 278
>cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=98.41 E-value=3.6e-06 Score=52.29 Aligned_cols=63 Identities=17% Similarity=0.302 Sum_probs=39.8
Q ss_pred eEEEEEEecc------eeeeecccCcceec---cccCCceEEEEeeEEEEeecccCCCeeEEEEEEcCCCcc
Q psy3045 32 SFALLCEAQE------NMWFKFIEGSSRKV---AVPLNDRVKQVSGTLIIKEAKVEDSGKYLCVVNNSVGGE 94 (267)
Q Consensus 32 ~v~l~C~~~~------~~W~~~~~~~~~~~---~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~ 94 (267)
.+.|.|.+.+ +.|++++....... ............+.|.+......|.|.|+|.+.|.....
T Consensus 1 ~~~L~C~v~g~~P~~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~~~~y~C~a~n~~l~~ 72 (82)
T cd05759 1 PYNLTCRARGAKPAAEIIWFRDGEVLDGATYSKELLKDGKRETTVSTLPITPSDHDTGRTFTCRARNEALPT 72 (82)
T ss_pred CEEEEEEEeCccCCCEEEEEECCEEccCceeeeeEecCCCeEEEEEEEEEeCceecCCCEEEEEEcCccCCC
Confidence 3689999976 99999643211110 000112222334578888777778899999999876543
No 279
>cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI. IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another.
Probab=98.39 E-value=1.5e-06 Score=55.40 Aligned_cols=57 Identities=18% Similarity=0.356 Sum_probs=44.8
Q ss_pred EEecCCCEEEEeEeCCCCCceEEEEECCccCCC---------CCCCeEEeccCCCCCCeEEEEEEEc
Q psy3045 145 TIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPD---------HNEPVFRIDSVRKEDKGMYQCVIRN 202 (267)
Q Consensus 145 ~~~~g~~v~l~C~~~~~p~~~~~W~~~~~~~~~---------~~~~~l~i~~~~~~d~g~y~C~~~~ 202 (267)
.+.+|++|+|.|.... +...+.|+|++..... .....+.|..++.+|+|.|.|....
T Consensus 11 vV~~G~~VTL~C~~~~-~~~~f~l~k~g~~~~~~~~~~~~~~~~~a~f~I~~~~~~~~G~Y~C~~~~ 76 (94)
T cd05711 11 VVPSGENVTLQCHSDI-RFDRFILYKEGRSKPVLHLYEKHHGGFQASFPLGPVTPAHAGTYRCYGSY 76 (94)
T ss_pred ccCCCCeEEEEEecCC-CCCEEEEEECCCCCCceecccccCCeEEEEEEecCCCcccCEEEEEEEEC
Confidence 6788999999998765 4568999998865321 1245689999999999999999753
No 280
>cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain. IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain.
Probab=98.38 E-value=1.6e-06 Score=56.90 Aligned_cols=64 Identities=22% Similarity=0.428 Sum_probs=43.2
Q ss_pred EecCCCeEEEEEEecc------eeeeecccCcc-e--ec---c-----c----cC-CceEEE------EeeEEEEeeccc
Q psy3045 26 KKPGGESFALLCEAQE------NMWFKFIEGSS-R--KV---A-----V----PL-NDRVKQ------VSGTLIIKEAKV 77 (267)
Q Consensus 26 ~v~~g~~v~l~C~~~~------~~W~~~~~~~~-~--~~---~-----~----~~-~~~~~~------~~~~l~i~~~~~ 77 (267)
.+.+|++|+|.|.+.. +.|++...+.. . .. . . .. ..++.. ....|+|.++..
T Consensus 2 ~v~~G~~vtL~C~~~~~~~~~~~~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~~ 81 (107)
T cd07700 2 LVQTNNTVKLSCEAKGISENTRIYWLRWRQAPKDSHFEFLALWSPLGGATYGEEVSQEKFSIRVTSDSSRYRLHINRVKP 81 (107)
T ss_pred EEcCCCCEEEEEEEecCCCCCeEEEEEECCCCCCCccEEEEEEcCCCCeEEccccccCcEEEEEECCCCEEEEEECCCCH
Confidence 5789999999998743 99999755411 0 00 0 0 00 223321 124699999999
Q ss_pred CCCeeEEEEEEc
Q psy3045 78 EDSGKYLCVVNN 89 (267)
Q Consensus 78 ~d~G~Y~C~~~~ 89 (267)
+|+|.|.|...+
T Consensus 82 ~Dsg~YyCa~~~ 93 (107)
T cd07700 82 EDSGTYFCMTVG 93 (107)
T ss_pred HHCEEEEEeEcC
Confidence 999999999863
No 281
>cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c
Probab=98.38 E-value=5e-06 Score=53.63 Aligned_cols=36 Identities=28% Similarity=0.479 Sum_probs=28.7
Q ss_pred CCeEEeccCCCCCCeEEEEEEEc-CCCCceEEEEEEE
Q psy3045 180 EPVFRIDSVRKEDKGMYQCVIRN-EQESAQASGELKL 215 (267)
Q Consensus 180 ~~~l~i~~~~~~d~g~y~C~~~~-~~~~~~~~~~l~v 215 (267)
..+|.|.+++.+|+|.|.|.+.. +.|.......|.|
T Consensus 61 ~~sL~I~~v~~~D~G~Y~C~v~~~~~g~~~~~~~l~V 97 (98)
T cd05718 61 DATISISNLRLEDEGNYICEFATFPQGNRQKVTTLTV 97 (98)
T ss_pred ceEEEEccCCcccCEEEEEEEEeCCCCcEEEEEEEEe
Confidence 56899999999999999999875 5566666665554
No 282
>cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively). Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel
Probab=98.38 E-value=2.4e-06 Score=53.02 Aligned_cols=55 Identities=25% Similarity=0.506 Sum_probs=39.1
Q ss_pred EEEEeEeCCC-CCceEEEEECCccCCCC-------CC------CeEEeccCCCCCCeEEEEEEEcCCCC
Q psy3045 152 AQFTCKYEGN-PVKTISWMKDGKPVPDH-------NE------PVFRIDSVRKEDKGMYQCVIRNEQES 206 (267)
Q Consensus 152 v~l~C~~~~~-p~~~~~W~~~~~~~~~~-------~~------~~l~i~~~~~~d~g~y~C~~~~~~~~ 206 (267)
+.|.|.+.+. |.++++|+++++.+... .. +.|.+.....++.+.|+|.|.|....
T Consensus 2 ~~L~C~~~~~~P~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~s~l~~~~~~~d~g~~~~C~v~h~~l~ 70 (82)
T cd05761 2 VELTCTSSGSKPAATIRWFKGDKELKGVKLKEEDENGKTFTVTSSLRFQVDREDDGAPIICRVDHPALK 70 (82)
T ss_pred EEEEEEecCcCcCCeEEEEECCEEccCceeeEecCCCCEEEEEEEEEEEcchhhCCCEEEEEEeChhcC
Confidence 6899999875 88899999999887532 11 22334444455567999999998654
No 283
>cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA). Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development.
Probab=98.38 E-value=6.3e-06 Score=54.76 Aligned_cols=65 Identities=22% Similarity=0.507 Sum_probs=44.9
Q ss_pred CceEEEecCCCEEEEeEeCCCC----CceEEEEEC----Ccc--C----------CC--------------CCCCeEEec
Q psy3045 141 PTVQTIDFGRPAQFTCKYEGNP----VKTISWMKD----GKP--V----------PD--------------HNEPVFRID 186 (267)
Q Consensus 141 ~~~~~~~~g~~v~l~C~~~~~p----~~~~~W~~~----~~~--~----------~~--------------~~~~~l~i~ 186 (267)
+....+.+|+++.|.|.....+ ...+.|++. +.+ + .. ....+|.|.
T Consensus 5 ~~~v~~~~G~~v~L~C~~s~~~~~~~~~~i~W~~~~~~~~~~~~v~~~~~~~~~~~~~~f~~R~~~~~~~~~~~~sL~I~ 84 (115)
T cd05880 5 SKEVEAVNGTDVRLKCTFSSSAPIGDTLVITWNFRPLDGGREESVFYYHKRPYPPPDGRFKGRVVWDGNIMRRDASILIW 84 (115)
T ss_pred CceEEEEcCCCEEEEEEEEeCCCCCCcEEEEEEEECCCCCceeEEEEECCCccccCcccccCeEEEecCCcCCceEEEEe
Confidence 3445788899999999865332 246899752 111 0 00 123569999
Q ss_pred cCCCCCCeEEEEEEEcCCC
Q psy3045 187 SVRKEDKGMYQCVIRNEQE 205 (267)
Q Consensus 187 ~~~~~d~g~y~C~~~~~~~ 205 (267)
+++.+|+|.|.|.+.+...
T Consensus 85 ~v~~~D~G~Y~C~v~~~~~ 103 (115)
T cd05880 85 QLQPTDNGTYTCQVKNPPD 103 (115)
T ss_pred eCChhhCEEEEEEEEeCCC
Confidence 9999999999999998654
No 284
>cd00098 IgC Immunoglobulin Constant domain. IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions.
Probab=98.37 E-value=1.2e-06 Score=56.25 Aligned_cols=59 Identities=24% Similarity=0.532 Sum_probs=44.4
Q ss_pred cCCCEEEEeEeCCC-C-CceEEEEECCccCCCCC---------C------CeEEeccCCCCCCeEEEEEEEcCCCC
Q psy3045 148 FGRPAQFTCKYEGN-P-VKTISWMKDGKPVPDHN---------E------PVFRIDSVRKEDKGMYQCVIRNEQES 206 (267)
Q Consensus 148 ~g~~v~l~C~~~~~-p-~~~~~W~~~~~~~~~~~---------~------~~l~i~~~~~~d~g~y~C~~~~~~~~ 206 (267)
.|+.+.|.|.+.|+ | ...++|+++|..+.... + +.|.+......+.+.|+|.|.|....
T Consensus 12 ~~~~~~L~C~a~g~~P~~~~i~W~~~g~~~~~~~~~~~~~~~~~gt~~~~s~l~v~~~~~~~~~~y~C~v~h~~~~ 87 (95)
T cd00098 12 LGGSVTLTCLATGFYPPDITVTWLKNGKELTSGVTTTPPVPNSDGTYSVSSQLTVSPSDWNSGDTYTCVVTHESLP 87 (95)
T ss_pred cCCCeEEEEEEeeEECCCcEEEEEECCEECCCceeccccccCCCCCEEEEEEEEECHHHhCCCCCEEEEEEeCCCC
Confidence 58899999999998 5 46899999998765321 1 23455555556899999999997653
No 285
>cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins. Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2
Probab=98.37 E-value=7.4e-06 Score=54.60 Aligned_cols=66 Identities=18% Similarity=0.440 Sum_probs=45.0
Q ss_pred CceEEEecCCCEEEEeEeCCCC----CceEEEEECCc---------------cCC--C--------------CCCCeEEe
Q psy3045 141 PTVQTIDFGRPAQFTCKYEGNP----VKTISWMKDGK---------------PVP--D--------------HNEPVFRI 185 (267)
Q Consensus 141 ~~~~~~~~g~~v~l~C~~~~~p----~~~~~W~~~~~---------------~~~--~--------------~~~~~l~i 185 (267)
+....+..|+.++|.|...... ...+.|++... ... . ....+|.|
T Consensus 5 p~~v~v~~G~~vtL~C~~s~~~~~~~~~~v~W~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I 84 (116)
T cd05715 5 PREVYAVNGSDVRLKCTFSSSEPISDDISVTWSFQPEGSGDTESIFHYHKGPYYPLKDGRFKDRVEWVGNPSRKDASIVI 84 (116)
T ss_pred CCeEEEEcCCCeEEEeEEeCCCCcCCceEEEEEEecCCCCCcEEEEEEcCCccccccCccccCcEEEecCCcCCeeEEEE
Confidence 3444777899999999865332 24688976321 000 0 01257999
Q ss_pred ccCCCCCCeEEEEEEEcCCCC
Q psy3045 186 DSVRKEDKGMYQCVIRNEQES 206 (267)
Q Consensus 186 ~~~~~~d~g~y~C~~~~~~~~ 206 (267)
.+++.+|+|.|.|.+.+....
T Consensus 85 ~~v~~~D~G~Y~C~v~~~~~~ 105 (116)
T cd05715 85 HNLQFTDNGTYTCDVKNPPDI 105 (116)
T ss_pred eeCCcccCEEEEEEEEeCCCC
Confidence 999999999999999976543
No 286
>cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region
Probab=98.37 E-value=2e-06 Score=55.30 Aligned_cols=59 Identities=17% Similarity=0.383 Sum_probs=41.5
Q ss_pred cCCCEEEEeEeCC-CCCceEEEEECCccCC------------------------CCCCCeEEeccCCCCCCeEEEEEEEc
Q psy3045 148 FGRPAQFTCKYEG-NPVKTISWMKDGKPVP------------------------DHNEPVFRIDSVRKEDKGMYQCVIRN 202 (267)
Q Consensus 148 ~g~~v~l~C~~~~-~p~~~~~W~~~~~~~~------------------------~~~~~~l~i~~~~~~d~g~y~C~~~~ 202 (267)
.|++|+|.|.... .....+.|+++...+. ...+.+|.|.+++.+|+|.|.|.+..
T Consensus 3 ~G~sVtL~c~~~~~~~~~~v~W~~~~~~~i~~~~~~~~~~~~~~~~~f~~R~~~~~~~~sL~I~~~~~~DsG~Y~c~v~~ 82 (97)
T cd05775 3 LGGSVTLPLNIPDGTEIESITWSFNTSLAIITPGEETAPEIIVTDPSYKERVNFSQNDYSLQISNLKMEDAGSYRAEINT 82 (97)
T ss_pred cCCeEEEeCCCCCCcEEEEEEEecCCEeEEEecCCCCCCccEEeCCCceeeEEecCCceeEEECCCchHHCEEEEEEEEc
Confidence 4788888887654 3445788876532110 01247899999999999999999998
Q ss_pred CCCC
Q psy3045 203 EQES 206 (267)
Q Consensus 203 ~~~~ 206 (267)
..+.
T Consensus 83 ~~~~ 86 (97)
T cd05775 83 KNGV 86 (97)
T ss_pred CCCC
Confidence 7644
No 287
>cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites.
Probab=98.36 E-value=2.1e-06 Score=54.82 Aligned_cols=61 Identities=16% Similarity=0.399 Sum_probs=44.2
Q ss_pred EEecCCCEEEEeEeCCC-CCce--EEEEECCccCCCCC-----------CCeEEeccCCCCCCe-EEEEEEEcCCCC
Q psy3045 145 TIDFGRPAQFTCKYEGN-PVKT--ISWMKDGKPVPDHN-----------EPVFRIDSVRKEDKG-MYQCVIRNEQES 206 (267)
Q Consensus 145 ~~~~g~~v~l~C~~~~~-p~~~--~~W~~~~~~~~~~~-----------~~~l~i~~~~~~d~g-~y~C~~~~~~~~ 206 (267)
.+.+|+.++|.|.+.+. |.+. +.||+++..+.... ..++++. +.++|.| .|+|.|.+....
T Consensus 12 ~~~eG~~~tL~C~v~g~~P~a~L~i~W~rG~~~l~~~~~~~~~~~~~~~~stlt~~-~~r~D~g~~~sC~A~l~l~~ 87 (100)
T cd05755 12 WQPVGKNYTLQCDVPGVAPRQNLTVVLLRGNETLSRQPFGDNTKSPVNAPATITIT-VDREDHGANFSCETELDLRP 87 (100)
T ss_pred cccCCCcEEEEEEEcCcCCCCcEEEEEeeCCEEcccceeccccCCCceeEEEEEEe-cchhhCCcEEEEEEEeccCc
Confidence 56789999999999875 6665 79999998875421 2345554 4455555 999999987643
No 288
>cd05884 Ig2_Necl-3 Second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig2_Necl-3: second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Ig domains are likely to participate in ligand binding and recognition.
Probab=98.34 E-value=2.4e-06 Score=53.01 Aligned_cols=55 Identities=27% Similarity=0.529 Sum_probs=39.6
Q ss_pred EEEEeEeCCC-CCceEEEEECCccCCCCC--------------CCeEEeccCCCCCCeEEEEEEEcCCCC
Q psy3045 152 AQFTCKYEGN-PVKTISWMKDGKPVPDHN--------------EPVFRIDSVRKEDKGMYQCVIRNEQES 206 (267)
Q Consensus 152 v~l~C~~~~~-p~~~~~W~~~~~~~~~~~--------------~~~l~i~~~~~~d~g~y~C~~~~~~~~ 206 (267)
++|.|.+.|+ |...++|++||..+.... .+.|.+.....++...|+|.|.|..-.
T Consensus 2 ~~LtC~a~gf~P~~~itW~kng~~l~~~~~~~~~~~~~~t~~~~s~L~~~~~~~d~g~~ytC~v~h~~l~ 71 (83)
T cd05884 2 MQLTCKTSGSKPAADIRWFKNDKEIKDVKYLKEEDANRKTFTVSSTLDFRVDRSDDGVAIICRVDHESLN 71 (83)
T ss_pred EEEEEEeCCccCCCEEEEEECCEECcCceeeEeeCCCCCEEEEEEEEEEEcccccCCCEEEEEEechhcC
Confidence 6899999875 778999999998875321 124555544455667999999987643
No 289
>PHA03269 envelope glycoprotein C; Provisional
Probab=98.33 E-value=4.3e-05 Score=61.23 Aligned_cols=154 Identities=14% Similarity=0.230 Sum_probs=90.2
Q ss_pred EEEEeecccCCCeeEEEEEEcCC-CccE--EEEEEEEEeccccccCCceEEEeCCCceEEEEEeecCCCcccccCCceEE
Q psy3045 69 TLIIKEAKVEDSGKYLCVVNNSV-GGES--VETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQT 145 (267)
Q Consensus 69 ~l~i~~~~~~d~G~Y~C~~~~~~-~~~~--~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~ 145 (267)
.|.|.+++..++|.|+=.+.+.. +... ..+.+.+...|...+.+. .
T Consensus 290 pL~I~sltaATeGvY~Wrv~~~~n~t~~~~~~VtV~~yr~PsVsV~p~-------------------------------P 338 (566)
T PHA03269 290 SLHILSLDASTEGTYIWRVIHTANKNVINEHHITVMSYKRPNITVIGD-------------------------------P 338 (566)
T ss_pred ceEEeecccccCceEEEEEecCCCCceeeeeEEEEEEecCCCccccCC-------------------------------c
Confidence 59999999999999986665332 3333 334444444444333332 5
Q ss_pred EecCCCEEEEeEeCCC-C--CceEEEEECCccCCCC----------CC-----CeEEeccC-CCC-CCeEEEEEEEcCCC
Q psy3045 146 IDFGRPAQFTCKYEGN-P--VKTISWMKDGKPVPDH----------NE-----PVFRIDSV-RKE-DKGMYQCVIRNEQE 205 (267)
Q Consensus 146 ~~~g~~v~l~C~~~~~-p--~~~~~W~~~~~~~~~~----------~~-----~~l~i~~~-~~~-d~g~y~C~~~~~~~ 205 (267)
+.+|+...-.|.+..+ | ...+.|++|+.++... ++ ++|++... ..+ ..-..+|.+.+.-.
T Consensus 339 VL~Ge~YkAtC~vA~YYPp~SvrlrWf~ng~~V~~~~it~t~~~~~dGlFSrVSTLtlp~~~~~d~~PPsLrCeV~W~RD 418 (566)
T PHA03269 339 VLLGNPYAAYCKVNKYYPPHSVIVKWTSNFGNIGKNFITDAIKENADGLFSSVSALHIPAQKNADYPPPAIQCNVLWIRD 418 (566)
T ss_pred cccCCCceEEEEeeeecCCCceEEEEEeCCcccCccccccceeecCCCceEEEEEEeccCccccCCCCCCceEEEEEccC
Confidence 6779999999998776 4 3489999998887531 11 23333211 111 13467999987543
Q ss_pred CceEE-EEEEEe-cccCCCeeecCCceeEEecCCcEEEEEEeecCCC--CcEEEEECCEE
Q psy3045 206 SAQAS-GELKLG-GRFDPPVIKESFSDETLNPGPNYYFKCIASGNPT--PEISWYLDGKK 261 (267)
Q Consensus 206 ~~~~~-~~l~v~-~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~--~~i~W~~~~~~ 261 (267)
....+ +.-.+. ..+.+|.+.+ .+..|+.+ |.+...|. ..+.|+-++..
T Consensus 419 sVS~tRfnAaatP~VY~~PtISm-----~FedG~AV---CtA~CVP~~~V~l~WlVgD~p 470 (566)
T PHA03269 419 GVSHMKYSAAVTPDVYPFPNVSI-----EIIDGHIV---CLAKCVPRGVVHFNWWINDIP 470 (566)
T ss_pred CchheecccccCCccccCCeEEE-----EEeCCEEE---EecccccCCCceEEEEecCCC
Confidence 33222 221111 1123444443 34444443 99988876 48999977654
No 290
>cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4. Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=98.33 E-value=1.1e-05 Score=49.49 Aligned_cols=71 Identities=13% Similarity=0.318 Sum_probs=51.6
Q ss_pred EEecCCCEEEEeEeCCCC--CceEEEEECCcc-CC--CCCCCeEEeccCCCCCCeEEEEEEEcCCCCceEEEEEEE
Q psy3045 145 TIDFGRPAQFTCKYEGNP--VKTISWMKDGKP-VP--DHNEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKL 215 (267)
Q Consensus 145 ~~~~g~~v~l~C~~~~~p--~~~~~W~~~~~~-~~--~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v 215 (267)
.+..|++++|+|.....+ .+.+.|..-+.. .. ..+..+|.+..+...|+|..+|.+............+.|
T Consensus 10 ~lL~G~sLtLtl~~~s~s~p~~~i~w~~P~n~~~~~~~~~~ktL~~~qv~~qdSG~WtC~V~~~~k~~~~~~~V~V 85 (88)
T cd07694 10 HVLSGTNLTLTLHGSSNSLPAFKVEWRGPGNKSKQILNQDKKTLNLVQLGPNDSGTWDCIVSVNSSEKTLKLDIKV 85 (88)
T ss_pred eeecCCcEEEEEecCCCCCCCccEEEeCCCCccceeccCCccEEEeceeCcccCCEEEEEEEECceEEEEEeeEEE
Confidence 677899999999986544 459999864433 21 236788999999999999999999865433334444443
No 291
>cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel
Probab=98.32 E-value=7e-06 Score=50.99 Aligned_cols=55 Identities=22% Similarity=0.491 Sum_probs=39.3
Q ss_pred EEEEeEeCCC-CCceEEEEECCccCCCC--------CC------CeEEeccCCCCCCeEEEEEEEcCCCC
Q psy3045 152 AQFTCKYEGN-PVKTISWMKDGKPVPDH--------NE------PVFRIDSVRKEDKGMYQCVIRNEQES 206 (267)
Q Consensus 152 v~l~C~~~~~-p~~~~~W~~~~~~~~~~--------~~------~~l~i~~~~~~d~g~y~C~~~~~~~~ 206 (267)
+.|.|.+.+. |.+.|+|+++|..+... +. +.|.+.....++...|+|.|.|....
T Consensus 2 ~~LtC~a~g~~P~~~ItW~k~g~~l~~~~~~~~~~~~~~t~~~~s~l~~~~~~~d~g~~~tC~v~h~~l~ 71 (83)
T cd07705 2 AKLRCTSSGSKPAANIKWRKGDQELEGAPTSVLEDGNGKTFTVSSSVEFQVTREDDGAEITCSVGHESLH 71 (83)
T ss_pred EEEEEEecCccCCCEeEEEECCEECCCcceeEEECCCCCEEEEEEEEEEEecchhCCCEEEEEEECcccC
Confidence 6799999876 88899999999876532 11 22333344455667999999998644
No 292
>cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=98.31 E-value=3.4e-06 Score=55.28 Aligned_cols=62 Identities=19% Similarity=0.421 Sum_probs=45.5
Q ss_pred CceEEEecCCCEEEEeEeCCCC-CceEEEEECC--ccCC---------------------CCCCCeEEeccCCCCCCeEE
Q psy3045 141 PTVQTIDFGRPAQFTCKYEGNP-VKTISWMKDG--KPVP---------------------DHNEPVFRIDSVRKEDKGMY 196 (267)
Q Consensus 141 ~~~~~~~~g~~v~l~C~~~~~p-~~~~~W~~~~--~~~~---------------------~~~~~~l~i~~~~~~d~g~y 196 (267)
+....+.+|++++|.|.+.+.. ...+.|||.. .... ......|.|.++..+|+|.|
T Consensus 7 p~~~~v~~G~~v~L~C~~~~~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~~~~~Dsg~Y 86 (106)
T cd04980 7 PATLSVSPGESATISCKASQSVSSNYLAWYQQKPGQAPKLLIYGASTLASGTPSRFSGSGSGTDFTLTISRVEPEDAAVY 86 (106)
T ss_pred CCcEEECCCCCEEEEEEECCCCCCCcEEEEEECCCCCcEEEEECccccCCCCCCCEEEeccCCEEEEEECCCChHHCEEE
Confidence 4455888999999999987654 5689999743 1110 01124689999999999999
Q ss_pred EEEEEc
Q psy3045 197 QCVIRN 202 (267)
Q Consensus 197 ~C~~~~ 202 (267)
.|.+.+
T Consensus 87 ~Ca~~~ 92 (106)
T cd04980 87 YCQQYG 92 (106)
T ss_pred EEEEeC
Confidence 999864
No 293
>cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins. Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion.
Probab=98.30 E-value=1.3e-05 Score=51.56 Aligned_cols=37 Identities=27% Similarity=0.439 Sum_probs=28.3
Q ss_pred CCCeEEeccCCCCCCeEEEEEEEc-CCCCceEEEEEEE
Q psy3045 179 NEPVFRIDSVRKEDKGMYQCVIRN-EQESAQASGELKL 215 (267)
Q Consensus 179 ~~~~l~i~~~~~~d~g~y~C~~~~-~~~~~~~~~~l~v 215 (267)
...+|.|.+++.+|+|.|.|.+.. +.|.......|.|
T Consensus 59 ~~~sL~I~nv~~~D~G~Y~C~~~~~p~g~~~~~~~L~v 96 (97)
T cd05846 59 NSTSITIWNVTLEDEGCYKCIFNTFPDGSKSGTMCLTV 96 (97)
T ss_pred CccEEEEeCCceeeeEEEEEEEEeCCCCCeeeEEEEEE
Confidence 347799999999999999999874 4555555555554
No 294
>cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain. Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies.
Probab=98.29 E-value=1.7e-06 Score=56.37 Aligned_cols=64 Identities=25% Similarity=0.372 Sum_probs=43.9
Q ss_pred EecCCCeEEEEEEecc-----eeeeecccC--cceeccc--------------cCCceEEE----EeeEEEEeecccCCC
Q psy3045 26 KKPGGESFALLCEAQE-----NMWFKFIEG--SSRKVAV--------------PLNDRVKQ----VSGTLIIKEAKVEDS 80 (267)
Q Consensus 26 ~v~~g~~v~l~C~~~~-----~~W~~~~~~--~~~~~~~--------------~~~~~~~~----~~~~l~i~~~~~~d~ 80 (267)
.+.+|++|+|.|.+.. +.|++...+ ....... ....|+.. ....|+|.+++.+|+
T Consensus 2 ~v~~G~~vtL~C~~~~~~~~~v~Wyrq~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~sDs 81 (104)
T cd05720 2 DAELGQKVELKCEVLNSSPTGCSWLFQPPGSAPQPTFLVYLSGSSKITWDEEELSSKRFSGSRSSNSFVLTLKNFQKENE 81 (104)
T ss_pred cccCCCeEEEEEEecCCCCCcEEEEEeCCCCCCCCEEEEEEeCCCCeeeccccCCCceEEEEecCCEEEEEECCCCHHHC
Confidence 4789999999999854 999997544 2210000 01223331 234799999999999
Q ss_pred eeEEEEEEc
Q psy3045 81 GKYLCVVNN 89 (267)
Q Consensus 81 G~Y~C~~~~ 89 (267)
|+|.|.+.+
T Consensus 82 gtY~Ca~~~ 90 (104)
T cd05720 82 GYYFCSVAS 90 (104)
T ss_pred EEEEEEEcc
Confidence 999999863
No 295
>PHA02987 Ig domain OX-2-like protein; Provisional
Probab=98.26 E-value=1.7e-05 Score=55.83 Aligned_cols=74 Identities=20% Similarity=0.369 Sum_probs=55.3
Q ss_pred EEEecCCCEEEEeEeC-CCCCceEEEEECCccCC----------------------CCCCCeEEeccCCCCCCeEEEEEE
Q psy3045 144 QTIDFGRPAQFTCKYE-GNPVKTISWMKDGKPVP----------------------DHNEPVFRIDSVRKEDKGMYQCVI 200 (267)
Q Consensus 144 ~~~~~g~~v~l~C~~~-~~p~~~~~W~~~~~~~~----------------------~~~~~~l~i~~~~~~d~g~y~C~~ 200 (267)
..+.+|+++.|.|... +...+.++|.|....+. ......|.|.+++.+|+|.|.|.+
T Consensus 25 v~V~ege~VtLsCs~t~s~~~~qVtWkK~~~~IatY~~~g~~i~~~Fk~Rve~mS~s~~~StItIknVt~sDeGcY~C~F 104 (189)
T PHA02987 25 ITVSEHVNVKISCNKTSSFNSILITWKKNNKTIAGYGPCGPVIVDKFKNKIEYLSKSFNESTILIKNVSLKDNGCYTCIF 104 (189)
T ss_pred EEEcCCCCEEEEEecCCCCccceEEEEEcCCCEEEEecCCcEEChhhcCeEEEeccCCCcceEEEEeCChhhCeEEEEEE
Confidence 3788999999999974 55677899998643221 013478999999999999999998
Q ss_pred Ec-CCC-CceEEEEEEEec
Q psy3045 201 RN-EQE-SAQASGELKLGG 217 (267)
Q Consensus 201 ~~-~~~-~~~~~~~l~v~~ 217 (267)
.. +.| ..+.+..|.|..
T Consensus 105 ~tfp~G~~~~gt~CLtVt~ 123 (189)
T PHA02987 105 NTLLSKNNEKGVVCLNVTT 123 (189)
T ss_pred EecCCCCCceeEEEEEEEc
Confidence 64 445 556677777764
No 296
>cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins. Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult
Probab=98.26 E-value=1.8e-05 Score=51.20 Aligned_cols=37 Identities=16% Similarity=0.322 Sum_probs=28.8
Q ss_pred CCCeEEeccCCCCCCeEEEEEEEc-CCCCceEEEEEEE
Q psy3045 179 NEPVFRIDSVRKEDKGMYQCVIRN-EQESAQASGELKL 215 (267)
Q Consensus 179 ~~~~l~i~~~~~~d~g~y~C~~~~-~~~~~~~~~~l~v 215 (267)
...+|.|.+++.+|+|.|.|.+.+ +.|..+....|.|
T Consensus 62 ~~~sL~I~nv~~sD~GtY~C~v~~~p~g~~~~~~~L~V 99 (100)
T cd05888 62 ADGALILRNAVQADEGKYKCRVITFPAGNFEAELVLTV 99 (100)
T ss_pred CceEEEEecCccccceEEEEEEEeCCCCCeeeEEEEEe
Confidence 356899999999999999999987 5565555555544
No 297
>cd00099 IgV Immunoglobulin variable domain (IgV). IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=98.24 E-value=3.8e-06 Score=54.92 Aligned_cols=61 Identities=20% Similarity=0.460 Sum_probs=45.1
Q ss_pred EEecCCCEEEEeEeCCC-CCceEEEEECCcc--CC--------------------------CCCCCeEEeccCCCCCCeE
Q psy3045 145 TIDFGRPAQFTCKYEGN-PVKTISWMKDGKP--VP--------------------------DHNEPVFRIDSVRKEDKGM 195 (267)
Q Consensus 145 ~~~~g~~v~l~C~~~~~-p~~~~~W~~~~~~--~~--------------------------~~~~~~l~i~~~~~~d~g~ 195 (267)
.+.+|++++|.|..... +...+.|++.... .. ......|.|.+++.+|+|.
T Consensus 2 ~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~~D~G~ 81 (105)
T cd00099 2 SVSEGESVTLSCTYSGSFSSYYIFWYRQKPGKGPELLIYISSNGSQYAGGVKGRFSGTRDSSKSSFTLTISSLQPEDSAV 81 (105)
T ss_pred eecCCCCEEEEEEEeCCcCcceEEEEEECCCCCCEEEEEEeCCCCccCccCCCcEEEEEeccCCEEEEEECCCCHHHCEE
Confidence 46679999999988765 5668899884321 00 0023578999999999999
Q ss_pred EEEEEEcCCC
Q psy3045 196 YQCVIRNEQE 205 (267)
Q Consensus 196 y~C~~~~~~~ 205 (267)
|.|.+.+..+
T Consensus 82 Y~C~v~~~~~ 91 (105)
T cd00099 82 YYCAVSLSGG 91 (105)
T ss_pred EEEEEecCCC
Confidence 9999987654
No 298
>cd00098 IgC Immunoglobulin Constant domain. IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions.
Probab=98.23 E-value=6.4e-06 Score=52.76 Aligned_cols=66 Identities=27% Similarity=0.353 Sum_probs=45.2
Q ss_pred cCCCeEEEEEEecc-------eeeeecccCcceec----cccCCceEEEEeeEEEEeecccCCCeeEEEEEEcCCCc
Q psy3045 28 PGGESFALLCEAQE-------NMWFKFIEGSSRKV----AVPLNDRVKQVSGTLIIKEAKVEDSGKYLCVVNNSVGG 93 (267)
Q Consensus 28 ~~g~~v~l~C~~~~-------~~W~~~~~~~~~~~----~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~ 93 (267)
..|+.+.|.|.+.+ +.|++++....... .....+......+.|.+......|.+.|+|.+.+....
T Consensus 11 ~~~~~~~L~C~a~g~~P~~~~i~W~~~g~~~~~~~~~~~~~~~~~gt~~~~s~l~v~~~~~~~~~~y~C~v~h~~~~ 87 (95)
T cd00098 11 LLGGSVTLTCLATGFYPPDITVTWLKNGKELTSGVTTTPPVPNSDGTYSVSSQLTVSPSDWNSGDTYTCVVTHESLP 87 (95)
T ss_pred HcCCCeEEEEEEeeEECCCcEEEEEECCEECCCceeccccccCCCCCEEEEEEEEECHHHhCCCCCEEEEEEeCCCC
Confidence 57899999999988 89999744322211 11222333344556777777777999999999987643
No 299
>cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites.
Probab=98.23 E-value=6.9e-06 Score=52.49 Aligned_cols=69 Identities=19% Similarity=0.262 Sum_probs=43.0
Q ss_pred eEEecCCCeEEEEEEecc--------eeeeecccCcceeccccCCceEEEEeeEEEEeecccCCCe-eEEEEEEcCCCc
Q psy3045 24 RFKKPGGESFALLCEAQE--------NMWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSG-KYLCVVNNSVGG 93 (267)
Q Consensus 24 ~~~v~~g~~v~l~C~~~~--------~~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G-~Y~C~~~~~~~~ 93 (267)
...+.+|+.++|.|.+.+ +.|++++....................+|.+. +.+.|.| .|+|.|.+..+.
T Consensus 10 p~~~~eG~~~tL~C~v~g~~P~a~L~i~W~rG~~~l~~~~~~~~~~~~~~~~stlt~~-~~r~D~g~~~sC~A~l~l~~ 87 (100)
T cd05755 10 PSWQPVGKNYTLQCDVPGVAPRQNLTVVLLRGNETLSRQPFGDNTKSPVNAPATITIT-VDREDHGANFSCETELDLRP 87 (100)
T ss_pred CCcccCCCcEEEEEEEcCcCCCCcEEEEEeeCCEEcccceeccccCCCceeEEEEEEe-cchhhCCcEEEEEEEeccCc
Confidence 345789999999999999 69999643322211111111222334566665 4455655 999999887644
No 300
>cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain. IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains.
Probab=98.23 E-value=9.4e-06 Score=54.10 Aligned_cols=67 Identities=19% Similarity=0.247 Sum_probs=46.6
Q ss_pred eeEEecCCCeEEEEEEecc-------eeeeecccCcceecc-------------ccCCceEEEE------eeEEEEeecc
Q psy3045 23 IRFKKPGGESFALLCEAQE-------NMWFKFIEGSSRKVA-------------VPLNDRVKQV------SGTLIIKEAK 76 (267)
Q Consensus 23 ~~~~v~~g~~v~l~C~~~~-------~~W~~~~~~~~~~~~-------------~~~~~~~~~~------~~~l~i~~~~ 76 (267)
....+.+|++|+|.|.... +.|++...+...... .....|+... ...|.|.++.
T Consensus 5 ~~~~v~~G~~vtL~C~~~~~~~~~~~~~WYkQ~~g~~p~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~ 84 (117)
T cd04981 5 GPGLVKPGQSLKLSCKASGFTFTSYGVNWVRQAPGKGLEWIGFINPGGGETYYADSVKGRFTITRDTSKSTVYLQLNSLT 84 (117)
T ss_pred CCeEEcCCCCEEEEEEEeCCCcccceEEEEEECCCCCcEEEEEEecCCCceEeCcccCCcEEEEEEccCCEEEEEECCCC
Confidence 5788999999999998642 899997443321110 0112344321 1369999999
Q ss_pred cCCCeeEEEEEEc
Q psy3045 77 VEDSGKYLCVVNN 89 (267)
Q Consensus 77 ~~d~G~Y~C~~~~ 89 (267)
.+|+|.|.|.+..
T Consensus 85 ~~Dsa~YyCa~~~ 97 (117)
T cd04981 85 PEDTAVYYCARGL 97 (117)
T ss_pred HHHCEEEEEEEEc
Confidence 9999999999864
No 301
>cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA
Probab=98.20 E-value=3.1e-05 Score=50.90 Aligned_cols=37 Identities=24% Similarity=0.495 Sum_probs=32.3
Q ss_pred CCeEEeccCCCCCCeEEEEEEEcCCCCceEEEEEEEe
Q psy3045 180 EPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLG 216 (267)
Q Consensus 180 ~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v~ 216 (267)
..+|.|.+++.+|+|.|.|.+.+.....+....|.|.
T Consensus 78 ~asL~i~~v~~sD~G~Y~C~V~~g~~~~~~~v~L~V~ 114 (117)
T cd05901 78 DASLTIVKLRASDAGVYRCEVMHGIEDTQDTVSLDVS 114 (117)
T ss_pred ceEEEEcccccccCEEEEEEEEECCcccEEEEEEEEE
Confidence 5789999999999999999999988777777777775
No 302
>cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen
Probab=98.19 E-value=1.7e-05 Score=51.94 Aligned_cols=37 Identities=19% Similarity=0.365 Sum_probs=31.0
Q ss_pred CCeEEeccCCCCCCeEEEEEEEcCCCCceEEEEEEEe
Q psy3045 180 EPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLG 216 (267)
Q Consensus 180 ~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v~ 216 (267)
..+|.|.+++.+|+|.|.|.+.......+....|.|.
T Consensus 71 ~asL~i~nv~~~D~G~Y~C~v~~g~~~~~~~v~L~V~ 107 (110)
T cd05902 71 NASLVLSRLRYSDSGTYRCEVVLGINDEQDTVPLEVT 107 (110)
T ss_pred eEEEEECCCCHHHCEEEEEEEEECCcccEEEEEEEEE
Confidence 5789999999999999999999877666667777664
No 303
>cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain. IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=98.18 E-value=9.1e-06 Score=54.20 Aligned_cols=62 Identities=19% Similarity=0.425 Sum_probs=46.5
Q ss_pred CceEEEecCCCEEEEeEeCC--CCCceEEEEECC--ccC-------------------CC-------C--CCCeEEeccC
Q psy3045 141 PTVQTIDFGRPAQFTCKYEG--NPVKTISWMKDG--KPV-------------------PD-------H--NEPVFRIDSV 188 (267)
Q Consensus 141 ~~~~~~~~g~~v~l~C~~~~--~p~~~~~W~~~~--~~~-------------------~~-------~--~~~~l~i~~~ 188 (267)
+....+.+|++++|.|.+.+ .+...+.||+.. ... .. . ....|.|.++
T Consensus 5 p~~~~~~~G~~v~l~C~~~~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~ 84 (116)
T cd04982 5 QLSITREESKSVTISCKVSGIDFSTTYIHWYRQKPGQALERLLYVSSTSTQRKLSGGTKNKFEARKDVGKSTSTLTIQNL 84 (116)
T ss_pred CCeEEeCCCCCEEEEEEEeCCCccccEEEEEEECCCCCCEEEEEEecCCCcEEeCcccCCCEEEEEECCCCEEEEEEEEC
Confidence 44557888999999999876 567789999842 111 00 0 2357899999
Q ss_pred CCCCCeEEEEEEEc
Q psy3045 189 RKEDKGMYQCVIRN 202 (267)
Q Consensus 189 ~~~d~g~y~C~~~~ 202 (267)
+.+|+|.|.|.+..
T Consensus 85 ~~~Dsg~Y~C~~~~ 98 (116)
T cd04982 85 EKEDSATYYCAYWE 98 (116)
T ss_pred CHHHCEEEEEEEec
Confidence 99999999999864
No 304
>cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition.
Probab=98.18 E-value=2.4e-05 Score=48.00 Aligned_cols=72 Identities=24% Similarity=0.323 Sum_probs=42.9
Q ss_pred eEEEEEEecc------eeeeecccCcceecc-ccCCceEEEEeeEEEEeecccCCCeeEEEEEEcCCCc-cEEEEEEEEE
Q psy3045 32 SFALLCEAQE------NMWFKFIEGSSRKVA-VPLNDRVKQVSGTLIIKEAKVEDSGKYLCVVNNSVGG-ESVETVLTVT 103 (267)
Q Consensus 32 ~v~l~C~~~~------~~W~~~~~~~~~~~~-~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~-~~~~~~l~V~ 103 (267)
.+.|.|.+.+ +.|++++........ .....+.....++|.+..-...|...|+|.+.|+.-. ......|.|.
T Consensus 1 ~~~L~C~s~gSkP~A~I~W~k~~~~l~~~~~~~~~~~~~~t~~S~L~~~p~~eDdG~~~~C~a~~~~l~~~~~~~~L~V~ 80 (82)
T cd05883 1 EIELNCTAMASKPAATIRWFKGNKELTGKSTVEETWSRMFTVTSQLMLKVTKEDDGVPVICLVDHPAVKDLQTQRYLEVQ 80 (82)
T ss_pred CEEEEEEecCCCCCCEEEEEECCEECcCcccceeccCCCcEEEEEEEEECchhhCCCEEEEEEcCcccCCceeeEEEEEE
Confidence 3689999999 999997433222111 1112222334567888655555566899999987643 3444455554
No 305
>PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A ....
Probab=98.16 E-value=6.7e-06 Score=54.49 Aligned_cols=62 Identities=18% Similarity=0.481 Sum_probs=46.9
Q ss_pred ceEEEecCCCEEEEeEeC-CCCCceEEEEECCcc-----CC----C---------------------CCCCeEEeccCCC
Q psy3045 142 TVQTIDFGRPAQFTCKYE-GNPVKTISWMKDGKP-----VP----D---------------------HNEPVFRIDSVRK 190 (267)
Q Consensus 142 ~~~~~~~g~~v~l~C~~~-~~p~~~~~W~~~~~~-----~~----~---------------------~~~~~l~i~~~~~ 190 (267)
....+.+|+++.|.|... ......+.|++.... +. . ....+|.|.+++.
T Consensus 9 ~~v~~~~G~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~i~~l~~ 88 (114)
T PF07686_consen 9 SPVTVQEGESVTLPCSYSSSSNQSSVYWYRQSPGQGPQLIIRYSLSSTNETPTPSYSGRFTFSGNGSQNNFSLTIKNLQP 88 (114)
T ss_dssp SEEEEETTSEEEEEEEEESSSSGSEEEEEEEETTSEEEEEEEEETTEEEEEEETTETTTEEEEEETTTTEEEEEESSESG
T ss_pred CeEEEecCCCEEEEEEEeCCCCcceEEEEEECccccceeeeeeccceeeeccccceeeeeeeeecccCCeEEEEECCCCc
Confidence 445788999999999987 445668999984331 10 0 0124699999999
Q ss_pred CCCeEEEEEEEcC
Q psy3045 191 EDKGMYQCVIRNE 203 (267)
Q Consensus 191 ~d~g~y~C~~~~~ 203 (267)
+|+|.|.|.+...
T Consensus 89 ~DsG~Y~C~v~~~ 101 (114)
T PF07686_consen 89 SDSGTYFCQVSTS 101 (114)
T ss_dssp GGEEEEEEEEEES
T ss_pred CcCEEEEEEEEEC
Confidence 9999999999876
No 306
>cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins. Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is
Probab=98.16 E-value=6.4e-05 Score=48.28 Aligned_cols=37 Identities=16% Similarity=0.402 Sum_probs=30.8
Q ss_pred CCCeEEeccCCCCCCeEEEEEEEc-CCCCceEEEEEEE
Q psy3045 179 NEPVFRIDSVRKEDKGMYQCVIRN-EQESAQASGELKL 215 (267)
Q Consensus 179 ~~~~l~i~~~~~~d~g~y~C~~~~-~~~~~~~~~~l~v 215 (267)
...+|.|.+++.+|.|.|+|.+.+ +.|..+....|.|
T Consensus 61 ~daSi~i~nl~~~D~G~Y~C~v~t~P~g~~~~~~~L~V 98 (99)
T cd05886 61 EDGTISLSRLELEDEGVYICEFATFPTGNRESQLNLTV 98 (99)
T ss_pred CcceEEEcCCccccCEEEEEEEEeCCCCCeEEEEEEEE
Confidence 468899999999999999999998 6676666666654
No 307
>cd05772 IgC_SIRP Signal-regulatory protein (SIRP) immunoglobulin-like domain. IgC_SIRP: Immunoglobulin-like domain of signal-regulatory proteins (SIRP); the signal-regulatory proteins (SIRP) are Ig-like cell surface receptors detected in hematopoietic and non-hematopoietic cells. While their extracellular domains are similar, SIRP are classified as alpha or beta based on the length of the intracytoplasmic domain. Those having a 110- to 113-amino acid tail are classified as SIRP-alpha, and those having a 5-amino acid tail as SIRP-beta. SIRP-alpha and SIRP-beta molecules are thought to have complementary roles in signal regulation: SIRP-alpha inhibit signalling via their immunoreceptor tyrosine (IT)-based inhibition motifs while SIRP-beta are activating. SIRP-beta lack the cytoplasmic domainof SIRP-alpha, and associate with at least one other transmembrane protein (DAP-12 or KARAP). The IT-based activation motifs within DAP-12's cytoplasmic domain may link SIRP-beta to the activating
Probab=98.15 E-value=2.6e-05 Score=51.17 Aligned_cols=62 Identities=21% Similarity=0.528 Sum_probs=40.6
Q ss_pred EEecCCCEEEEeEeCCC-C-CceEEEEECCccCCCC--------CC------CeEEeccCCCCCCe-EEEEEEEcCCCCc
Q psy3045 145 TIDFGRPAQFTCKYEGN-P-VKTISWMKDGKPVPDH--------NE------PVFRIDSVRKEDKG-MYQCVIRNEQESA 207 (267)
Q Consensus 145 ~~~~g~~v~l~C~~~~~-p-~~~~~W~~~~~~~~~~--------~~------~~l~i~~~~~~d~g-~y~C~~~~~~~~~ 207 (267)
....|+.++|.|.+.++ | ...++|++||+.+... +. +.|.+. ....|.+ .|+|.+.|.....
T Consensus 17 ~~~~g~~~tL~C~a~gF~P~~i~v~W~kng~~~~~~~~~~~p~~d~~ty~~~S~L~~~-~~~~d~~~~ytC~V~H~~l~~ 95 (111)
T cd05772 17 RANPGQSVNFTCSAHGFSPRDITVKWLKNGNELSAEQPNITPEGDSVSYNVTSTVQVK-LTEDDVHSQVTCEVQHRTLQA 95 (111)
T ss_pred ccCCCCCEEEEEEEeeEeCCCCEEEEEECCEECcccccceeeCCCCCcEEEEEEEEEE-CccccccCceEEEEEeCCCCC
Confidence 44568889999999986 5 3699999999887532 11 122233 2333333 5999999876433
No 308
>PHA03271 envelope glycoprotein C; Provisional
Probab=98.15 E-value=0.00032 Score=55.30 Aligned_cols=154 Identities=12% Similarity=0.241 Sum_probs=87.2
Q ss_pred EEEEeecccCCCeeEEEEEEcCCCcc--EEEEEEEEEec-cccccCCceEEEeCCCceEEEEEeecCCCcccccCCceEE
Q psy3045 69 TLIIKEAKVEDSGKYLCVVNNSVGGE--SVETVLTVTAP-LAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQT 145 (267)
Q Consensus 69 ~l~i~~~~~~d~G~Y~C~~~~~~~~~--~~~~~l~V~~~-~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~ 145 (267)
.|.|+++.-.|+|.|.-...+..... ...+.+.+... +...+.+. .
T Consensus 208 ~v~I~svD~~t~Gy~~v~~~d~~N~~i~e~~~~~~v~~RPPsVsV~a~-------------------------------P 256 (490)
T PHA03271 208 GVEIRNVDYADNGYIQVIMRDPFNRPLLDKHIYIRVCQRPASVDVLAP-------------------------------P 256 (490)
T ss_pred eEEEEEeecccceEEEEEecCCCCCccccceEEEEEEecCCCccccCC-------------------------------c
Confidence 68999999999997755544433332 23333333332 22222221 4
Q ss_pred EecCCCEEEEeEeCCC-C--CceEEEEECCccCCCCC---C--------------CeEEeccCCCCCCeEEEEEEEcCCC
Q psy3045 146 IDFGRPAQFTCKYEGN-P--VKTISWMKDGKPVPDHN---E--------------PVFRIDSVRKEDKGMYQCVIRNEQE 205 (267)
Q Consensus 146 ~~~g~~v~l~C~~~~~-p--~~~~~W~~~~~~~~~~~---~--------------~~l~i~~~~~~d~g~y~C~~~~~~~ 205 (267)
+..|+.....|.+..+ | ...+.|++||.++.... . +++.+........-..+|.+.....
T Consensus 257 VL~Ge~YkAtC~vAnYYPP~SvrlrWf~nG~~V~~~~~rdt~~~w~d~~~g~S~VSTltl~a~~~~~PPsLRCeV~W~rd 336 (490)
T PHA03271 257 VLSGENYKASCIVRHFYPPGSVYVSWRQNGNIATPRKDRDGSFWWFESGRGATLVSTITLGNSGIDPPPKISCLVAWKQG 336 (490)
T ss_pred cccCCCceEEEEeeeecCCCceEEEEEeCCccccCccccceeEEEecCCCceeEEEEEEcccccCCCCCCceEEEEEccC
Confidence 6679999999998776 4 33899999998764210 0 1232323223334488999987654
Q ss_pred CceEEEEEEEe-cccCCCeeecCCceeEEecCCcEEEEEEeecCCC-CcEEEEECCEE
Q psy3045 206 SAQASGELKLG-GRFDPPVIKESFSDETLNPGPNYYFKCIASGNPT-PEISWYLDGKK 261 (267)
Q Consensus 206 ~~~~~~~l~v~-~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~-~~i~W~~~~~~ 261 (267)
....+..-.+. ..+.+|.+.+ .+..|+.+ |.+...|. ..+.|+-++..
T Consensus 337 ~v~s~rnAaatP~VY~~P~ISv-----~FedG~AV---CtA~CVP~gV~lrWlVgD~p 386 (490)
T PHA03271 337 DMISTTNATAIPTVYHHPRISL-----AFKDGYAI---CTIECVPSGITVRWLVHDEP 386 (490)
T ss_pred CceeeeecccCCccccCCeEEE-----EEeCCEEE---EeccccCCCcEEEEEecCCC
Confidence 33333211111 0123344333 44444444 88887775 48999976643
No 309
>cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain. IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=98.15 E-value=1e-05 Score=52.15 Aligned_cols=58 Identities=17% Similarity=0.405 Sum_probs=42.1
Q ss_pred EEecCCCEEEEeEeCCC--CCceEEEEECCc--cCC---------------------CCCCCeEEeccCCCCCCeEEEEE
Q psy3045 145 TIDFGRPAQFTCKYEGN--PVKTISWMKDGK--PVP---------------------DHNEPVFRIDSVRKEDKGMYQCV 199 (267)
Q Consensus 145 ~~~~g~~v~l~C~~~~~--p~~~~~W~~~~~--~~~---------------------~~~~~~l~i~~~~~~d~g~y~C~ 199 (267)
.+.+|++++|.|...+. ....+.||+... ... ......|.|.+++.+|+|.|.|.
T Consensus 2 ~v~~G~~v~l~C~~~~~~~~~~~i~Wy~q~~g~~~~~l~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~~Dsg~Y~C~ 81 (98)
T cd04984 2 SVSPGETVTITCTGSSGNISGNYVNWYQQKPGSAPRYLIYEDSDRPSGIPDRFSGSKSGNTASLTISGAQTEDEADYYCQ 81 (98)
T ss_pred ccCCCCCEEEEEEEcCCCcCCCCEEEEEECCCCCccEEEEeccccCCCCCCCEEEEccCCEEEEEECCCChhhCEEEEEE
Confidence 46679999999987654 455799987432 110 00234689999999999999999
Q ss_pred EEc
Q psy3045 200 IRN 202 (267)
Q Consensus 200 ~~~ 202 (267)
+.+
T Consensus 82 ~~~ 84 (98)
T cd04984 82 VWD 84 (98)
T ss_pred Ecc
Confidence 865
No 310
>cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4. Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=98.14 E-value=3.2e-05 Score=47.44 Aligned_cols=72 Identities=18% Similarity=0.205 Sum_probs=49.5
Q ss_pred eEEecCCCeEEEEEEecc-------eeeeecccCcceeccccCCceEEEEeeEEEEeecccCCCeeEEEEEEcCCCccEE
Q psy3045 24 RFKKPGGESFALLCEAQE-------NMWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYLCVVNNSVGGESV 96 (267)
Q Consensus 24 ~~~v~~g~~v~l~C~~~~-------~~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~ 96 (267)
+-.+..|++++|+|.... ++|....+..- .....+..+|.+.++...|+|..+|.+.........
T Consensus 8 ~~~lL~G~sLtLtl~~~s~s~p~~~i~w~~P~n~~~--------~~~~~~~ktL~~~qv~~qdSG~WtC~V~~~~k~~~~ 79 (88)
T cd07694 8 SDHVLSGTNLTLTLHGSSNSLPAFKVEWRGPGNKSK--------QILNQDKKTLNLVQLGPNDSGTWDCIVSVNSSEKTL 79 (88)
T ss_pred CCeeecCCcEEEEEecCCCCCCCccEEEeCCCCccc--------eeccCCccEEEeceeCcccCCEEEEEEEECceEEEE
Confidence 347889999999999854 89987422110 001124458999999999999999999876433445
Q ss_pred EEEEEEE
Q psy3045 97 ETVLTVT 103 (267)
Q Consensus 97 ~~~l~V~ 103 (267)
.+.+.|.
T Consensus 80 ~~~V~Vl 86 (88)
T cd07694 80 KLDIKVL 86 (88)
T ss_pred EeeEEEE
Confidence 5555543
No 311
>cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins. Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also
Probab=98.12 E-value=7.6e-05 Score=47.51 Aligned_cols=37 Identities=19% Similarity=0.296 Sum_probs=30.3
Q ss_pred CCCeEEeccCCCCCCeEEEEEEE-cCCCCceEEEEEEE
Q psy3045 179 NEPVFRIDSVRKEDKGMYQCVIR-NEQESAQASGELKL 215 (267)
Q Consensus 179 ~~~~l~i~~~~~~d~g~y~C~~~-~~~~~~~~~~~l~v 215 (267)
...+|.|.+++.+|+|.|+|.+. .+.|+.+.+..|.|
T Consensus 58 ~d~sl~i~nv~~~D~G~Y~C~v~tfP~G~~~~~~~l~~ 95 (96)
T cd05887 58 LDATIMLENVGFSDIGVYICKAVTFPLGNTQSSTTVTV 95 (96)
T ss_pred CccEEEEeCCCccccEEEEEEEEeCCCCCeeEEEEEEE
Confidence 46899999999999999999985 56677777776655
No 312
>cd07699 IgC_L Immunoglobulin Constant domain. IgC_L: Immunoglobulin (Ig) light chain constant (C) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=98.06 E-value=5.2e-06 Score=53.57 Aligned_cols=60 Identities=18% Similarity=0.427 Sum_probs=40.5
Q ss_pred EecCCCEEEEeEeCCC-C-CceEEEEECCccCCCC---------CC------CeEEeccCCCCCCeEEEEEEEcCCC
Q psy3045 146 IDFGRPAQFTCKYEGN-P-VKTISWMKDGKPVPDH---------NE------PVFRIDSVRKEDKGMYQCVIRNEQE 205 (267)
Q Consensus 146 ~~~g~~v~l~C~~~~~-p-~~~~~W~~~~~~~~~~---------~~------~~l~i~~~~~~d~g~y~C~~~~~~~ 205 (267)
...++.++|.|.+.|+ | ...+.|++||..+..+ .+ +.|.+..-...+...|+|.+.+...
T Consensus 14 ~~~~~~~~L~C~~~gfyP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgty~~~s~L~v~~~~w~~~~~~sC~V~H~~l 90 (100)
T cd07699 14 LEKSGKATLVCLINDFYPGFATVQWKVDGATVSSGVQTSTTEQQSDNTYSLSSYLTLTKSDWNKHKVYTCEVTHEGL 90 (100)
T ss_pred HccCCCcEEEEEEEeEECCCCEEEEEECCEECcccEeccccEECCCCCEEEEEEEEEcHHHhCCCCeEEEEEEecCC
Confidence 3346779999999986 5 5689999999887421 11 2233433333446689999988753
No 313
>cd07699 IgC_L Immunoglobulin Constant domain. IgC_L: Immunoglobulin (Ig) light chain constant (C) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=98.04 E-value=9.6e-06 Score=52.34 Aligned_cols=79 Identities=16% Similarity=0.163 Sum_probs=47.5
Q ss_pred CCcccCCCCceeEEecCCCeEEEEEEecc-------eeeeecccCcceecc----ccCCceEEEEeeEEEEeecccCCCe
Q psy3045 13 APTFSSVSDIIRFKKPGGESFALLCEAQE-------NMWFKFIEGSSRKVA----VPLNDRVKQVSGTLIIKEAKVEDSG 81 (267)
Q Consensus 13 ~P~~~~~~~~~~~~v~~g~~v~l~C~~~~-------~~W~~~~~~~~~~~~----~~~~~~~~~~~~~l~i~~~~~~d~G 81 (267)
||.+.+.+. ......+++.++|.|.+.+ +.|++++........ ....+......+.|.+..-...+..
T Consensus 1 pP~V~v~~p-~~~~~~~~~~~~L~C~~~gfyP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgty~~~s~L~v~~~~w~~~~ 79 (100)
T cd07699 1 APSVTIFPP-SSEELEKSGKATLVCLINDFYPGFATVQWKVDGATVSSGVQTSTTEQQSDNTYSLSSYLTLTKSDWNKHK 79 (100)
T ss_pred CCeEEEECC-CHHHHccCCCcEEEEEEEeEECCCCEEEEEECCEECcccEeccccEECCCCCEEEEEEEEEcHHHhCCCC
Confidence 354444442 2333456788999999999 899997443221110 1111233334456767666666678
Q ss_pred eEEEEEEcCCC
Q psy3045 82 KYLCVVNNSVG 92 (267)
Q Consensus 82 ~Y~C~~~~~~~ 92 (267)
.|+|.+.+...
T Consensus 80 ~~sC~V~H~~l 90 (100)
T cd07699 80 VYTCEVTHEGL 90 (100)
T ss_pred eEEEEEEecCC
Confidence 99999988653
No 314
>cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain. IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=98.03 E-value=2.6e-05 Score=51.99 Aligned_cols=63 Identities=19% Similarity=0.403 Sum_probs=45.3
Q ss_pred CceEEEecCCCEEEEeEeCCC-CCceEEEEECC--ccCC-----------------------CCCCCeEEeccCCCCCCe
Q psy3045 141 PTVQTIDFGRPAQFTCKYEGN-PVKTISWMKDG--KPVP-----------------------DHNEPVFRIDSVRKEDKG 194 (267)
Q Consensus 141 ~~~~~~~~g~~v~l~C~~~~~-p~~~~~W~~~~--~~~~-----------------------~~~~~~l~i~~~~~~d~g 194 (267)
+....+..|++++|.|..... ....+.|++.. ..+. ......|.|..+..+|+|
T Consensus 6 ~~~v~~~~G~~v~L~C~~~~~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~~~~~Dsg 85 (116)
T cd07706 6 QPDVSVQVGEEVTLNCRYETSWTNYYIFWYKQLPSGEMTFLIRQKSIYGNATKGRYSVNFQKAQKSISLTISALQLEDSA 85 (116)
T ss_pred CCceEEcCCCCEEEEEEEeCCCCceEEEEEEECCCCceEEEEEecCccCCccCCeEEEEEeccCCEEEEEECCCCHHHCE
Confidence 344578889999999987653 45679999832 1100 012346899999999999
Q ss_pred EEEEEEEcC
Q psy3045 195 MYQCVIRNE 203 (267)
Q Consensus 195 ~y~C~~~~~ 203 (267)
.|.|.+...
T Consensus 86 ~Y~C~~~~~ 94 (116)
T cd07706 86 KYFCALSTL 94 (116)
T ss_pred EEEEEEECC
Confidence 999999853
No 315
>smart00407 IGc1 Immunoglobulin C-Type.
Probab=98.00 E-value=2.9e-05 Score=47.26 Aligned_cols=53 Identities=23% Similarity=0.573 Sum_probs=36.8
Q ss_pred EEEEeEeCCC-CC-ceEEEEECCccCCCC---------CC------CeEEeccCCCCCCeEEEEEEEcCC
Q psy3045 152 AQFTCKYEGN-PV-KTISWMKDGKPVPDH---------NE------PVFRIDSVRKEDKGMYQCVIRNEQ 204 (267)
Q Consensus 152 v~l~C~~~~~-p~-~~~~W~~~~~~~~~~---------~~------~~l~i~~~~~~d~g~y~C~~~~~~ 204 (267)
++|.|.+.|+ |. ..+.|++||.++..+ .+ +.|.+.....++...|+|.+.+..
T Consensus 2 ~~L~C~a~gf~P~~i~v~W~k~g~~~~~~~~~~~~~~~~~gt~~~~s~L~v~~~~~~~~~~~tC~V~H~~ 71 (75)
T smart00407 2 ATLVCLVSGFYPPDITVTWLRNGQEVTSGVSTTDPLKNSDGTYFLSSYLTVSASTWESGDTYTCQVTHEG 71 (75)
T ss_pred eEEEEEEEeEeCCCCEEEEEECCEECCCCEEECceEECCCCCEEEEEEEEEccccCCCCCEEEEEEEEcC
Confidence 6799999987 54 599999999864321 11 234444445566779999998865
No 316
>cd07692 Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of CD3 epsilon chain. Ig_CD3_epsilon; immunoglobulin (Ig)-like domain of CD3 epsilon chain. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=97.99 E-value=2.5e-05 Score=44.94 Aligned_cols=51 Identities=22% Similarity=0.471 Sum_probs=37.4
Q ss_pred cCCCEEEEeEeCCCCCceEEEEECCccCCCCCCCeEEeccCCCCCCeEEEEEEEcC
Q psy3045 148 FGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNEPVFRIDSVRKEDKGMYQCVIRNE 203 (267)
Q Consensus 148 ~g~~v~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~ 203 (267)
.|.+|+|+|...+. .+.|.+|+..+.. ....+.+.+-. ++.|.|.|.+.+.
T Consensus 6 sGTtVtlTCP~~~~---~i~W~~n~~~~~g-~~~~~~~~~~~-e~~G~Y~C~~~~~ 56 (65)
T cd07692 6 SGTTVTVTCPLSGD---DIKWKKNDQVSQG-SDEKYLSLNHF-SSSGYYHCTADNA 56 (65)
T ss_pred eccEEEEECCCCCC---CceEEeCCccCCC-CCceEEeeccC-CCCceEEEEeCCC
Confidence 48999999986533 3999999976655 33455555555 8899999999643
No 317
>cd07691 Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. Ig_CD3_gamma_delta; immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=97.98 E-value=5e-05 Score=44.01 Aligned_cols=49 Identities=20% Similarity=0.489 Sum_probs=39.2
Q ss_pred CCCEEEEeEeCCCCCceEEEEECCccCCCCCCCeEEeccCCCCCCeEEEEEEEc
Q psy3045 149 GRPAQFTCKYEGNPVKTISWMKDGKPVPDHNEPVFRIDSVRKEDKGMYQCVIRN 202 (267)
Q Consensus 149 g~~v~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~ 202 (267)
.+.|.|.|... .+|.|++ |..+......+|.+.....+..|.|.|.+++
T Consensus 6 ~~~V~L~C~~~----tsi~W~k-G~~~~~~~~~tlnLGs~~~DPRG~Y~C~~s~ 54 (69)
T cd07691 6 EGKVFLKCNGA----TNITWKK-GKEILEVSNTLLDLGSRINDPRGTYSCKESE 54 (69)
T ss_pred CceEEEEecCC----CcEEEec-CcccccccccEEeccCcccCCCcceEecCcc
Confidence 46799999652 4699999 6655544578899998889999999999877
No 318
>PHA02914 Immunoglobulin-like domain protein; Provisional
Probab=97.96 E-value=0.0054 Score=48.44 Aligned_cols=113 Identities=14% Similarity=0.282 Sum_probs=74.4
Q ss_pred ceEEEecCCCEEEEeEeC--CCC-CceEEEEECCccCCC--------------------------------CCCCeEEec
Q psy3045 142 TVQTIDFGRPAQFTCKYE--GNP-VKTISWMKDGKPVPD--------------------------------HNEPVFRID 186 (267)
Q Consensus 142 ~~~~~~~g~~v~l~C~~~--~~p-~~~~~W~~~~~~~~~--------------------------------~~~~~l~i~ 186 (267)
....+..|..+.|.|..+ |.. ..+..|+--|-++.. -..++|+|.
T Consensus 272 ~~~~~~~g~~v~~~c~~s~~~~e~i~~~~w~~t~~~~~~~~g~~~~~~~v~~~~~~~~~~~i~~~~~~s~dlk~STLTIk 351 (500)
T PHA02914 272 DEVMLEVGKRVDIECFFSMCGNENISNAKWIDTGFEIGPLIGTVKSKDIVEGDFAEDDDFMISAHANYSDDLKNSTLTIK 351 (500)
T ss_pred ceeEeccCcEEEEEEEEeecCCcccccceEEecCCcccceeEEEEecceeecccccCCceEEEEecccccchhhceEEee
Confidence 344566699999999865 443 558899876655431 024789999
Q ss_pred cCCCCCCeEEEEEEEcCCCCceEEEEEEEecccCCCeeecCCceeEEecCC-cEEEEEEeec--CCCCcEEEEECCEEcC
Q psy3045 187 SVRKEDKGMYQCVIRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGP-NYYFKCIASG--NPTPEISWYLDGKKLV 263 (267)
Q Consensus 187 ~~~~~d~g~y~C~~~~~~~~~~~~~~l~v~~~~~~p~~~~~~~~~~~~~g~-~~~l~C~~~~--~p~~~i~W~~~~~~l~ 263 (267)
.+..+.+|-|.|+|...........-+.|... +... ...+|. .-...|.+-. ..++++.|.-+|....
T Consensus 352 ka~I~N~GCY~~~a~~g~~~~ec~~Cl~V~d~-----V~f~----W~~e~~n~T~V~Cyv~sy~~kp~si~wkvnGV~~~ 422 (500)
T PHA02914 352 KAHINNAGCYEAQAFMGKFKEECRHCFKVADH-----VFFK----WNTEGDNETKVACYAAQYDMQPFSILWKSNGVSFG 422 (500)
T ss_pred eEEEEcCCceEEEEecCcchhhhhhheEeccE-----EEEE----EEeccCceEEEEEEEEecccCCceeEEEEccEEec
Confidence 99999999999999987655555555555321 1110 122333 3456797743 3456899999987643
No 319
>cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions.
Probab=97.96 E-value=7.1e-05 Score=48.20 Aligned_cols=60 Identities=27% Similarity=0.478 Sum_probs=43.6
Q ss_pred EEecCCCEEEEeEeCC-CCCceEEEEECCccC------------C------------CCCCCeEEeccCCCCCCeEEEEE
Q psy3045 145 TIDFGRPAQFTCKYEG-NPVKTISWMKDGKPV------------P------------DHNEPVFRIDSVRKEDKGMYQCV 199 (267)
Q Consensus 145 ~~~~g~~v~l~C~~~~-~p~~~~~W~~~~~~~------------~------------~~~~~~l~i~~~~~~d~g~y~C~ 199 (267)
.+.+|++++|.|.... .....+.|++....- . ......|+|.+++.+|+|.|.|.
T Consensus 3 ~~~~G~~vtl~C~~~~~~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~ 82 (98)
T cd05716 3 TGELGGSVTIPCPYPPKNRSYEKYWCKWGSAGCCLIIVSEGSVQSQYEGRVSLTDDPDNGVFTVTLNQLRKEDAGWYWCG 82 (98)
T ss_pred EEEeCCeEEEEeeCCCCCCCcEeEeECCCCCCCCeEEECCCccccccCCCEEEEecCCCCEEEEEEcCCCHHHCEEEEEE
Confidence 5677999999998764 345678899854211 0 01225799999999999999999
Q ss_pred EEcCC
Q psy3045 200 IRNEQ 204 (267)
Q Consensus 200 ~~~~~ 204 (267)
+....
T Consensus 83 ~~~~~ 87 (98)
T cd05716 83 VGDDG 87 (98)
T ss_pred cccCC
Confidence 87654
No 320
>cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells.
Probab=97.94 E-value=7.8e-05 Score=47.46 Aligned_cols=73 Identities=29% Similarity=0.364 Sum_probs=41.5
Q ss_pred CCcccCCCCceeEEecCCCeEEEEEEecc-------eeeeecccCcceecc----ccCCceEEEEeeEEEEeecccCCCe
Q psy3045 13 APTFSSVSDIIRFKKPGGESFALLCEAQE-------NMWFKFIEGSSRKVA----VPLNDRVKQVSGTLIIKEAKVEDSG 81 (267)
Q Consensus 13 ~P~~~~~~~~~~~~v~~g~~v~l~C~~~~-------~~W~~~~~~~~~~~~----~~~~~~~~~~~~~l~i~~~~~~d~G 81 (267)
||.+.+.+. .. .|+.++|.|.+.+ +.|++++........ ....+......+.|.+ ...+.+
T Consensus 2 pP~v~v~~~--~~---~~~~~~L~C~a~gF~P~~i~v~W~~~g~~~~~~~~~~~~~~~~d~ty~~~s~l~v---~~~~~~ 73 (93)
T cd07698 2 PPEVRVTRK--RA---PDGSLTLSCHATGFYPRDIEVTWLRDGEDSVDDVESGEILPNGDGTYQLWVTLEV---PPEDKA 73 (93)
T ss_pred CCEEEEEec--CC---CCCcEEEEEEEEEEeCCCcEEEEEECCEECcccccccceEECCCCeEEEEEEEEE---CCCCCC
Confidence 566655542 11 1788999999999 899997421111110 0111222223334444 334788
Q ss_pred eEEEEEEcCCCc
Q psy3045 82 KYLCVVNNSVGG 93 (267)
Q Consensus 82 ~Y~C~~~~~~~~ 93 (267)
.|+|.+.+....
T Consensus 74 ~ytC~V~H~~~~ 85 (93)
T cd07698 74 RYSCRVEHSGLK 85 (93)
T ss_pred EEEEEEEeCCCC
Confidence 999999886543
No 321
>cd05847 IgC_CH2_IgE CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin E (IgE). IgC_CH2_IgE: The second constant domain of the heavy chain of immunoglobulin E (IgE). The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma, and mu, all consisting of a variable domain (VH) and three (in alpha, delta, and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). The different classes of antibodies vary in their heavy chains; the IgE class has the epsilon type. This domain (Cepsilon2) of IgE is in place of the flexible hinge region found in IgG.
Probab=97.91 E-value=3.1e-05 Score=49.25 Aligned_cols=59 Identities=15% Similarity=0.373 Sum_probs=39.5
Q ss_pred cCCCEEEEeEeCCC-C-CceEEEEECCccCCCC---------CC------CeEEeccCCCCCCeEEEEEEEcCCCC
Q psy3045 148 FGRPAQFTCKYEGN-P-VKTISWMKDGKPVPDH---------NE------PVFRIDSVRKEDKGMYQCVIRNEQES 206 (267)
Q Consensus 148 ~g~~v~l~C~~~~~-p-~~~~~W~~~~~~~~~~---------~~------~~l~i~~~~~~d~g~y~C~~~~~~~~ 206 (267)
.++.++|.|.+.|+ | ...++|+++|..+... ++ +.|.+..-...+...|+|.+.|....
T Consensus 13 ~~~~~~L~C~a~gFyP~~I~vtW~~dg~~~~~~~~~s~~~~~~~~Ty~~~S~L~v~~~~w~~~~~ytC~V~H~~~~ 88 (94)
T cd05847 13 TSETIQLLCLISGYTPGTIEVEWLVDGQVATLVAASTAPQKEEGSTFSTTSELNVTQEDWKSGKTYTCKVTHQGTT 88 (94)
T ss_pred CCCCEEEEEEEEeEECCCCEEEEEECCEECcCceeecccEECCCCcEEEEEEEEEchHHhcCCCeEEEEEEECCee
Confidence 35669999999986 5 4689999999876321 11 22334433334567999999987643
No 322
>cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain. IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain.
Probab=97.89 E-value=4.9e-05 Score=49.80 Aligned_cols=57 Identities=19% Similarity=0.451 Sum_probs=40.7
Q ss_pred EEecCCCEEEEeEeCCC-CCceEEEEECCcc---C--------C------------C----------CCCCeEEeccCCC
Q psy3045 145 TIDFGRPAQFTCKYEGN-PVKTISWMKDGKP---V--------P------------D----------HNEPVFRIDSVRK 190 (267)
Q Consensus 145 ~~~~g~~v~l~C~~~~~-p~~~~~W~~~~~~---~--------~------------~----------~~~~~l~i~~~~~ 190 (267)
.+.+|++++|.|...+. ....+.||+...- . . . .....|+|.++..
T Consensus 2 ~v~~G~~vtL~C~~~~~~~~~~~~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~~ 81 (107)
T cd07700 2 LVQTNNTVKLSCEAKGISENTRIYWLRWRQAPKDSHFEFLALWSPLGGATYGEEVSQEKFSIRVTSDSSRYRLHINRVKP 81 (107)
T ss_pred EEcCCCCEEEEEEEecCCCCCeEEEEEECCCCCCCccEEEEEEcCCCCeEEccccccCcEEEEEECCCCEEEEEECCCCH
Confidence 46789999999987653 3457999974321 0 0 0 0123589999999
Q ss_pred CCCeEEEEEEE
Q psy3045 191 EDKGMYQCVIR 201 (267)
Q Consensus 191 ~d~g~y~C~~~ 201 (267)
+|+|.|.|...
T Consensus 82 ~Dsg~YyCa~~ 92 (107)
T cd07700 82 EDSGTYFCMTV 92 (107)
T ss_pred HHCEEEEEeEc
Confidence 99999999975
No 323
>cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins. Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes.
Probab=97.88 E-value=0.00032 Score=44.70 Aligned_cols=34 Identities=24% Similarity=0.391 Sum_probs=26.8
Q ss_pred CCCeEEeccCCCCCCeEEEEEEEc-CCCCceEEEE
Q psy3045 179 NEPVFRIDSVRKEDKGMYQCVIRN-EQESAQASGE 212 (267)
Q Consensus 179 ~~~~l~i~~~~~~d~g~y~C~~~~-~~~~~~~~~~ 212 (267)
...+|.|.+++.+|+|.|+|.+.. +.|..+....
T Consensus 58 ~d~sI~i~nvt~~D~G~Y~C~~~t~P~g~~~~~i~ 92 (96)
T cd05889 58 EDMSLSFNNATEEDVGLYCCSLVTYPQGSWEKVIE 92 (96)
T ss_pred CccEEEEcCCCcccCEEEEEEEEeCCCCCeEEEEE
Confidence 468999999999999999999965 4565554443
No 324
>smart00406 IGv Immunoglobulin V-Type.
Probab=97.88 E-value=4.7e-05 Score=46.97 Aligned_cols=56 Identities=30% Similarity=0.493 Sum_probs=36.0
Q ss_pred eEEEEEEecc-------eeeeecccCcceeccc------------cCCceEEE------EeeEEEEeecccCCCeeEEEE
Q psy3045 32 SFALLCEAQE-------NMWFKFIEGSSRKVAV------------PLNDRVKQ------VSGTLIIKEAKVEDSGKYLCV 86 (267)
Q Consensus 32 ~v~l~C~~~~-------~~W~~~~~~~~~~~~~------------~~~~~~~~------~~~~l~i~~~~~~d~G~Y~C~ 86 (267)
+|.|.|.+.. +.|++...+....... ....|+.. ...+|.|.+++.+|+|.|.|.
T Consensus 1 ~v~l~C~~~~~~~~~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~ 80 (81)
T smart00406 1 SVTLSCKASGFTFSSYYVSWVRQPPGKGLEWLGYIGSSGSTYYQQSYKGRVTISKDTSKNDVSLTISNLRVEDTGTYYCA 80 (81)
T ss_pred CEEEEEEEeccccceeEEEEEEeCCCCCeEEEEEEcCCCcEEECcccCCcEEEEecCcCCEEEEEEcCCCHHHCEEEEEc
Confidence 4789998776 7898864322110000 12344432 225799999999999999997
Q ss_pred E
Q psy3045 87 V 87 (267)
Q Consensus 87 ~ 87 (267)
+
T Consensus 81 v 81 (81)
T smart00406 81 V 81 (81)
T ss_pred C
Confidence 4
No 325
>cd00096 Ig Immunoglobulin domain. Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=97.88 E-value=7.5e-05 Score=44.25 Aligned_cols=53 Identities=40% Similarity=0.815 Sum_probs=41.5
Q ss_pred EEEEeEeCCCCCceEEEEECCccCCC-------------CCCCeEEeccCCCCCCeEEEEEEEcCC
Q psy3045 152 AQFTCKYEGNPVKTISWMKDGKPVPD-------------HNEPVFRIDSVRKEDKGMYQCVIRNEQ 204 (267)
Q Consensus 152 v~l~C~~~~~p~~~~~W~~~~~~~~~-------------~~~~~l~i~~~~~~d~g~y~C~~~~~~ 204 (267)
+.|.|.+.+.+...+.|++++..... .....|.+..+...|.|.|.|.+.+..
T Consensus 1 ~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~ 66 (74)
T cd00096 1 VTLTCLASGPPPPTITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSGTYTCVASNSA 66 (74)
T ss_pred CEEEEEecCCCCCcEEEEECCEECCCcccEEeccccCcceeEEEEEECccCcccCcEEEEEEecCc
Confidence 46889988877889999997755431 123568888999999999999998875
No 326
>cd00096 Ig Immunoglobulin domain. Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=97.86 E-value=8.6e-05 Score=43.97 Aligned_cols=59 Identities=34% Similarity=0.456 Sum_probs=39.8
Q ss_pred EEEEEEecc-----eeeeecccCcceecc--ccCCceEEEEeeEEEEeecccCCCeeEEEEEEcCC
Q psy3045 33 FALLCEAQE-----NMWFKFIEGSSRKVA--VPLNDRVKQVSGTLIIKEAKVEDSGKYLCVVNNSV 91 (267)
Q Consensus 33 v~l~C~~~~-----~~W~~~~~~~~~~~~--~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~ 91 (267)
+.|.|.+.+ +.|++++........ .............|.|.++...|.|.|.|.+.+..
T Consensus 1 ~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~ 66 (74)
T cd00096 1 VTLTCLASGPPPPTITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSGTYTCVASNSA 66 (74)
T ss_pred CEEEEEecCCCCCcEEEEECCEECCCcccEEeccccCcceeEEEEEECccCcccCcEEEEEEecCc
Confidence 468899876 999996432221111 01222233455689999999999999999998765
No 327
>cd07691 Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. Ig_CD3_gamma_delta; immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=97.83 E-value=6.1e-05 Score=43.67 Aligned_cols=59 Identities=20% Similarity=0.201 Sum_probs=40.0
Q ss_pred CCeEEEEEEecc-eeeeecccCcceeccccCCceEEEEeeEEEEeecccCCCeeEEEEEEcCCCccEEEEEEEEEe
Q psy3045 30 GESFALLCEAQE-NMWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTVTA 104 (267)
Q Consensus 30 g~~v~l~C~~~~-~~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~V~~ 104 (267)
.++|.|.|.+.. +.|+++.... ...+.+|.+......-.|.|.|.+.+ ......|+|..
T Consensus 6 ~~~V~L~C~~~tsi~W~kG~~~~------------~~~~~tlnLGs~~~DPRG~Y~C~~s~----~~~~~~LQVyY 65 (69)
T cd07691 6 EGKVFLKCNGATNITWKKGKEIL------------EVSNTLLDLGSRINDPRGTYSCKESE----PNKEKTLQVYY 65 (69)
T ss_pred CceEEEEecCCCcEEEecCcccc------------cccccEEeccCcccCCCcceEecCcc----CCCcEEEEEEE
Confidence 458999998755 9999942111 11145788888888889999999866 23344555554
No 328
>cd05766 IgC_MHC_II_beta Class II major histocompatibility complex (MHC) beta chain immunoglobulin domain. IgC_MHC_II_beta: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II beta chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosome be
Probab=97.83 E-value=0.00014 Score=46.22 Aligned_cols=61 Identities=18% Similarity=0.439 Sum_probs=39.9
Q ss_pred EecCCCEEEEeEeCCC-C-CceEEEEECCccCCCC---------CCCeEE---eccCCCCCCeEEEEEEEcCCCC
Q psy3045 146 IDFGRPAQFTCKYEGN-P-VKTISWMKDGKPVPDH---------NEPVFR---IDSVRKEDKGMYQCVIRNEQES 206 (267)
Q Consensus 146 ~~~g~~v~l~C~~~~~-p-~~~~~W~~~~~~~~~~---------~~~~l~---i~~~~~~d~g~y~C~~~~~~~~ 206 (267)
+..|+.++|.|.+.|+ | ...++|++||..+... ...++. .-.+...+...|+|.+.+....
T Consensus 11 ~~~~~~~~L~C~~~gFyP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgTy~~~s~L~~~~~~~~~ysC~V~H~~l~ 85 (94)
T cd05766 11 GSLSHPHLLVCHVWGFYPPEITVKWFKNGQEETEGVVSTELIPNGDWTYQILVMLETTPSRGDTYTCVVEHSSLQ 85 (94)
T ss_pred ccCCCCeEEEEEEeeecCCCCEEEEEECCeecCCCceecceEECCCCcEEEEEEEEEcCCCCCEEEEEEEeCCCC
Confidence 3457889999999986 5 3489999999886542 111111 1122334556899999887543
No 329
>cd05769 IgC_TCR_beta T cell receptor (TCR) beta chain constant immunoglobulin domain. IgC_TCR_beta: Constant domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the beta chain. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The antigen binding site is formed by the variable domains of the alpha and beta chains, located at the N-terminus of each chain. Alpha/beta TCRs recognize antigens differently from gamma/delta TCRs.
Probab=97.82 E-value=4.3e-05 Score=50.38 Aligned_cols=62 Identities=23% Similarity=0.445 Sum_probs=40.4
Q ss_pred ecCCCEEEEeEeCCC-CC-ceEEEEECCccCCCC----------CC------CeEEeccCCCCC-CeEEEEEEEcCCCCc
Q psy3045 147 DFGRPAQFTCKYEGN-PV-KTISWMKDGKPVPDH----------NE------PVFRIDSVRKED-KGMYQCVIRNEQESA 207 (267)
Q Consensus 147 ~~g~~v~l~C~~~~~-p~-~~~~W~~~~~~~~~~----------~~------~~l~i~~~~~~d-~g~y~C~~~~~~~~~ 207 (267)
..++.++|.|.+.++ |. ..+.|++|+..+..+ +. +.|.+......+ ...|+|.+.|.....
T Consensus 16 ~~~~~~tL~Cla~gFyP~~I~V~W~kng~~l~~g~~~~~~~~~~~~gTYs~~S~L~v~~~~w~~~~~~ytC~V~H~g~~~ 95 (115)
T cd05769 16 RNKRKATLVCLATGFYPDHVSLSWKVNGKEVTDGVATDPQALRENTSTYSISSRLRVSATEWFNPRNTFTCIVQFYGGTD 95 (115)
T ss_pred ccCCCcEEEEEEEeEeCCCcEEEEEECCEECCCCcccccceecCCCCeEEEEEEEEEChHHhccCCCeEEEEEEEeCCcc
Confidence 346779999999986 54 489999999776432 11 223333333323 458999999876544
Q ss_pred e
Q psy3045 208 Q 208 (267)
Q Consensus 208 ~ 208 (267)
.
T Consensus 96 ~ 96 (115)
T cd05769 96 T 96 (115)
T ss_pred c
Confidence 4
No 330
>cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11.
Probab=97.80 E-value=0.00023 Score=47.63 Aligned_cols=63 Identities=16% Similarity=0.195 Sum_probs=43.1
Q ss_pred CceEEEecCCCEEEEeEeCCC------CCceEEEEECCcc-----C----C-------------------CCCCCeEEec
Q psy3045 141 PTVQTIDFGRPAQFTCKYEGN------PVKTISWMKDGKP-----V----P-------------------DHNEPVFRID 186 (267)
Q Consensus 141 ~~~~~~~~g~~v~l~C~~~~~------p~~~~~W~~~~~~-----~----~-------------------~~~~~~l~i~ 186 (267)
|....+..|+.|+|.|..... ....+.|++...- + . ......|.|.
T Consensus 6 P~~v~~~~G~~VtL~C~f~~~~~~~~~~~~~~~Wykq~~g~~~~~~~~~~~~~~~~~~~f~gR~~~~~~~~~~~~sL~I~ 85 (119)
T cd05712 6 PKSVSVQEGLCVLIPCSFSYPADWPVSNGVHGIWYKGHPYPKNRPPVATNNRSRLVHESTRGRFRLLGDLGKKNCSLLIS 85 (119)
T ss_pred CCEEEEeccccEEEEEEeeCcccccCCCceEEEEEeCCCCCCCCCcEEEcCCCccccccccccEEEecCCCCCEEEEEEc
Confidence 444578889999999975422 1346889974321 0 0 0112569999
Q ss_pred cCCCCCCeEEEEEEEcC
Q psy3045 187 SVRKEDKGMYQCVIRNE 203 (267)
Q Consensus 187 ~~~~~d~g~y~C~~~~~ 203 (267)
+++.+|+|.|.|.+...
T Consensus 86 ~l~~~Dsg~Y~C~~~~~ 102 (119)
T cd05712 86 DAQPEDSGKYFFRVELG 102 (119)
T ss_pred cCChhhCeEEEEEEEcC
Confidence 99999999999998764
No 331
>cd07696 IgC_CH3 CH3 domain (third constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH3: The third immunoglobulin constant domain (IgC) of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=97.78 E-value=5.2e-05 Score=48.39 Aligned_cols=61 Identities=13% Similarity=0.338 Sum_probs=38.3
Q ss_pred EEecCCCEEEEeEeCCC--C-CceEEEEECCccCCC--------CCC------CeEEeccCCCCCCeEEEEEEEcCCC
Q psy3045 145 TIDFGRPAQFTCKYEGN--P-VKTISWMKDGKPVPD--------HNE------PVFRIDSVRKEDKGMYQCVIRNEQE 205 (267)
Q Consensus 145 ~~~~g~~v~l~C~~~~~--p-~~~~~W~~~~~~~~~--------~~~------~~l~i~~~~~~d~g~y~C~~~~~~~ 205 (267)
.+..|+..+|.|.+.|+ | ...++|.||+..... ..+ +.|.+..-...+.-.|+|.+.|...
T Consensus 10 ~l~~~~~~tLtC~v~gf~yP~~i~v~W~r~~~~~~~~~~~~~~~~~dgty~~~s~l~v~~~~w~~g~~ysC~V~H~~l 87 (96)
T cd07696 10 QLLLTKSVKLTCLVTNLTSPEGVNVTWTRGSGEPVKASIQPPESHNNATLSVTSTLNVSTDDWISGDTFQCKVTHPDL 87 (96)
T ss_pred HhccCCCeEEEEEEeCCCCCCCcEEEEEECCeEeeeEEecccccCCCCCEEEEEEEEeCHHHccCCCcEEEEEECCCC
Confidence 45568999999999988 4 448899998743211 111 2233332223344589999988753
No 332
>cd05772 IgC_SIRP Signal-regulatory protein (SIRP) immunoglobulin-like domain. IgC_SIRP: Immunoglobulin-like domain of signal-regulatory proteins (SIRP); the signal-regulatory proteins (SIRP) are Ig-like cell surface receptors detected in hematopoietic and non-hematopoietic cells. While their extracellular domains are similar, SIRP are classified as alpha or beta based on the length of the intracytoplasmic domain. Those having a 110- to 113-amino acid tail are classified as SIRP-alpha, and those having a 5-amino acid tail as SIRP-beta. SIRP-alpha and SIRP-beta molecules are thought to have complementary roles in signal regulation: SIRP-alpha inhibit signalling via their immunoreceptor tyrosine (IT)-based inhibition motifs while SIRP-beta are activating. SIRP-beta lack the cytoplasmic domainof SIRP-alpha, and associate with at least one other transmembrane protein (DAP-12 or KARAP). The IT-based activation motifs within DAP-12's cytoplasmic domain may link SIRP-beta to the activating
Probab=97.78 E-value=0.00032 Score=46.06 Aligned_cols=67 Identities=22% Similarity=0.334 Sum_probs=39.5
Q ss_pred EecCCCeEEEEEEecc-------eeeeecccCcceecc-c-cCCc-eEEEEeeEEEEeecccCCC-eeEEEEEEcCCCc
Q psy3045 26 KKPGGESFALLCEAQE-------NMWFKFIEGSSRKVA-V-PLND-RVKQVSGTLIIKEAKVEDS-GKYLCVVNNSVGG 93 (267)
Q Consensus 26 ~v~~g~~v~l~C~~~~-------~~W~~~~~~~~~~~~-~-~~~~-~~~~~~~~l~i~~~~~~d~-G~Y~C~~~~~~~~ 93 (267)
....|+.++|.|.+.+ ++|++|+........ . ...+ ......+.|.+..- ..|. ..|+|.+.+....
T Consensus 17 ~~~~g~~~tL~C~a~gF~P~~i~v~W~kng~~~~~~~~~~~p~~d~~ty~~~S~L~~~~~-~~d~~~~ytC~V~H~~l~ 94 (111)
T cd05772 17 RANPGQSVNFTCSAHGFSPRDITVKWLKNGNELSAEQPNITPEGDSVSYNVTSTVQVKLT-EDDVHSQVTCEVQHRTLQ 94 (111)
T ss_pred ccCCCCCEEEEEEEeeEeCCCCEEEEEECCEECcccccceeeCCCCCcEEEEEEEEEECc-cccccCceEEEEEeCCCC
Confidence 4557889999999999 899997543221100 0 1111 12333445656543 3343 4599999986543
No 333
>cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively). Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel
Probab=97.77 E-value=0.0003 Score=43.57 Aligned_cols=61 Identities=18% Similarity=0.265 Sum_probs=36.8
Q ss_pred EEEEEEecc------eeeeecccCcceec--cccCCceEEEEeeEEEEeecccCCCeeEEEEEEcCCCc
Q psy3045 33 FALLCEAQE------NMWFKFIEGSSRKV--AVPLNDRVKQVSGTLIIKEAKVEDSGKYLCVVNNSVGG 93 (267)
Q Consensus 33 v~l~C~~~~------~~W~~~~~~~~~~~--~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~ 93 (267)
+.|.|.+.+ +.|++++....... ......+.....+.|.+......+.+.|+|.+.|....
T Consensus 2 ~~L~C~~~~~~P~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~s~l~~~~~~~d~g~~~~C~v~h~~l~ 70 (82)
T cd05761 2 VELTCTSSGSKPAATIRWFKGDKELKGVKLKEEDENGKTFTVTSSLRFQVDREDDGAPIICRVDHPALK 70 (82)
T ss_pred EEEEEEecCcCcCCeEEEEECCEEccCceeeEecCCCCEEEEEEEEEEEcchhhCCCEEEEEEeChhcC
Confidence 689999977 99999743221110 01112222233445666655556667999999987654
No 334
>cd05769 IgC_TCR_beta T cell receptor (TCR) beta chain constant immunoglobulin domain. IgC_TCR_beta: Constant domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the beta chain. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The antigen binding site is formed by the variable domains of the alpha and beta chains, located at the N-terminus of each chain. Alpha/beta TCRs recognize antigens differently from gamma/delta TCRs.
Probab=97.77 E-value=0.0001 Score=48.61 Aligned_cols=80 Identities=18% Similarity=0.204 Sum_probs=47.3
Q ss_pred CCcccCCCCceeEEecCCCeEEEEEEecc-------eeeeecccCcceec-----cccCCceEEEEeeEEEEeecccCC-
Q psy3045 13 APTFSSVSDIIRFKKPGGESFALLCEAQE-------NMWFKFIEGSSRKV-----AVPLNDRVKQVSGTLIIKEAKVED- 79 (267)
Q Consensus 13 ~P~~~~~~~~~~~~v~~g~~v~l~C~~~~-------~~W~~~~~~~~~~~-----~~~~~~~~~~~~~~l~i~~~~~~d- 79 (267)
+|.+.+.+. ....+.+++.++|.|.+.+ +.|++++....... ....++......+.|.+......+
T Consensus 2 ~P~V~v~~p-s~~e~~~~~~~tL~Cla~gFyP~~I~V~W~kng~~l~~g~~~~~~~~~~~~gTYs~~S~L~v~~~~w~~~ 80 (115)
T cd05769 2 PPTVAIFPP-SEAEIRNKRKATLVCLATGFYPDHVSLSWKVNGKEVTDGVATDPQALRENTSTYSISSRLRVSATEWFNP 80 (115)
T ss_pred CCEEEEECc-ChHHhccCCCcEEEEEEEeEeCCCcEEEEEECCEECCCCcccccceecCCCCeEEEEEEEEEChHHhccC
Confidence 354444432 2333446788999999999 89999753322111 111111334445667776655544
Q ss_pred CeeEEEEEEcCCCc
Q psy3045 80 SGKYLCVVNNSVGG 93 (267)
Q Consensus 80 ~G~Y~C~~~~~~~~ 93 (267)
...|+|.+.+....
T Consensus 81 ~~~ytC~V~H~g~~ 94 (115)
T cd05769 81 RNTFTCIVQFYGGT 94 (115)
T ss_pred CCeEEEEEEEeCCc
Confidence 56899999987544
No 335
>cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased
Probab=97.76 E-value=9.9e-05 Score=48.04 Aligned_cols=66 Identities=11% Similarity=0.177 Sum_probs=45.2
Q ss_pred eeEEecCCCeEEEEEEecc--------eeeeecccCccee---------ccccCCceEE------EEeeEEEEeecccCC
Q psy3045 23 IRFKKPGGESFALLCEAQE--------NMWFKFIEGSSRK---------VAVPLNDRVK------QVSGTLIIKEAKVED 79 (267)
Q Consensus 23 ~~~~v~~g~~v~l~C~~~~--------~~W~~~~~~~~~~---------~~~~~~~~~~------~~~~~l~i~~~~~~d 79 (267)
....+..|+.++|.|.+.+ +.|+|..++.... .......++. ...-+|.+.+++.+|
T Consensus 6 ~~~lv~p~~sv~LsC~~sg~~~s~e~~~~wvRq~pg~lE~c~~~~~~g~~~~~~~~r~tcs~~~s~ntv~L~l~~L~a~D 85 (115)
T cd05721 6 SPVLASSNGAASLVCEYTYNGFSKEFRASLLKGADSAVEVCAVTGNMSNQLQTSLDGFNCDGTLGNEQVNFTLQNLRANQ 85 (115)
T ss_pred CCeEEcCCCCEEEEEEecCCccccEEEEEEEEeCCCCcEEEEEEeCCCccccccCCCeEEeEeCCCCEEEEEEcCCCHHH
Confidence 4667889999999999977 8899975542110 0001222221 122479999999999
Q ss_pred CeeEEEEEE
Q psy3045 80 SGKYLCVVN 88 (267)
Q Consensus 80 ~G~Y~C~~~ 88 (267)
++.|.|...
T Consensus 86 Ta~Y~Ca~e 94 (115)
T cd05721 86 TDIYFCKIE 94 (115)
T ss_pred CeEEEEEee
Confidence 999999873
No 336
>cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain. Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies.
Probab=97.75 E-value=0.00011 Score=47.92 Aligned_cols=58 Identities=19% Similarity=0.471 Sum_probs=39.1
Q ss_pred EEecCCCEEEEeEeCCCCCceEEEEECCc----cC------CC---------------------CCCCeEEeccCCCCCC
Q psy3045 145 TIDFGRPAQFTCKYEGNPVKTISWMKDGK----PV------PD---------------------HNEPVFRIDSVRKEDK 193 (267)
Q Consensus 145 ~~~~g~~v~l~C~~~~~p~~~~~W~~~~~----~~------~~---------------------~~~~~l~i~~~~~~d~ 193 (267)
.+.+|++++|.|.........+.|++... .+ .. .....|.|..++.+|+
T Consensus 2 ~v~~G~~vtL~C~~~~~~~~~v~Wyrq~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~sDs 81 (104)
T cd05720 2 DAELGQKVELKCEVLNSSPTGCSWLFQPPGSAPQPTFLVYLSGSSKITWDEEELSSKRFSGSRSSNSFVLTLKNFQKENE 81 (104)
T ss_pred cccCCCeEEEEEEecCCCCCcEEEEEeCCCCCCCCEEEEEEeCCCCeeeccccCCCceEEEEecCCEEEEEECCCCHHHC
Confidence 35568888888876544445688887432 11 00 1124689999999999
Q ss_pred eEEEEEEEc
Q psy3045 194 GMYQCVIRN 202 (267)
Q Consensus 194 g~y~C~~~~ 202 (267)
|+|.|.+..
T Consensus 82 gtY~Ca~~~ 90 (104)
T cd05720 82 GYYFCSVAS 90 (104)
T ss_pred EEEEEEEcc
Confidence 999998763
No 337
>cd05768 IgC_CH4 CH4 domain (fourth constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH4: The fourth immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=97.75 E-value=5.4e-05 Score=48.98 Aligned_cols=59 Identities=19% Similarity=0.520 Sum_probs=37.2
Q ss_pred ecCCCEEEEeEeCCC-C-CceEEEEECCccCCCCC------------CCe------EEeccCCCCCCeEEEEEEEcCCC
Q psy3045 147 DFGRPAQFTCKYEGN-P-VKTISWMKDGKPVPDHN------------EPV------FRIDSVRKEDKGMYQCVIRNEQE 205 (267)
Q Consensus 147 ~~g~~v~l~C~~~~~-p-~~~~~W~~~~~~~~~~~------------~~~------l~i~~~~~~d~g~y~C~~~~~~~ 205 (267)
..+..++|.|.+.|+ | ...++|++||.++.... ..+ |.+..-...+...|+|.+.|...
T Consensus 14 ~~~~~~tL~C~a~gFyP~~i~v~W~k~g~~~~~~~~~~~~~~~~~~~dgTy~~~s~L~v~~~~w~~~~~ytC~V~H~~l 92 (102)
T cd05768 14 SLQETATLTCLVKGFSPSDIFVKWLQNGQPLSKQKYVTTAPMQEPGGNESYFLYSKLTVSAEDWNAGDVFTCVVGHEAL 92 (102)
T ss_pred CcCCceEEEEEEeeEeCCCCEEEEEECCEECCcccccccCcccccCCCCeEEEEEEEEEcHHHhcCCCcEEEEeEeCCC
Confidence 346789999999987 4 34789999998764210 122 22222222345578888888653
No 338
>cd05768 IgC_CH4 CH4 domain (fourth constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH4: The fourth immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=97.70 E-value=0.00014 Score=47.12 Aligned_cols=66 Identities=14% Similarity=0.184 Sum_probs=40.9
Q ss_pred ecCCCeEEEEEEecc-------eeeeecccCcceec---cc-cCC---ceEEEEeeEEEEeecccCCCeeEEEEEEcCCC
Q psy3045 27 KPGGESFALLCEAQE-------NMWFKFIEGSSRKV---AV-PLN---DRVKQVSGTLIIKEAKVEDSGKYLCVVNNSVG 92 (267)
Q Consensus 27 v~~g~~v~l~C~~~~-------~~W~~~~~~~~~~~---~~-~~~---~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~ 92 (267)
+..|+.++|.|.+.+ +.|++++....... .. ... +......+.|.+..-.+.+...|+|.+.+...
T Consensus 13 ~~~~~~~tL~C~a~gFyP~~i~v~W~k~g~~~~~~~~~~~~~~~~~~~dgTy~~~s~L~v~~~~w~~~~~ytC~V~H~~l 92 (102)
T cd05768 13 LSLQETATLTCLVKGFSPSDIFVKWLQNGQPLSKQKYVTTAPMQEPGGNESYFLYSKLTVSAEDWNAGDVFTCVVGHEAL 92 (102)
T ss_pred hCcCCceEEEEEEeeEeCCCCEEEEEECCEECCcccccccCcccccCCCCeEEEEEEEEEcHHHhcCCCcEEEEeEeCCC
Confidence 445788999999999 89999754322111 01 111 23333445666655545566789999998653
No 339
>cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel
Probab=97.69 E-value=0.00091 Score=41.48 Aligned_cols=61 Identities=16% Similarity=0.154 Sum_probs=37.8
Q ss_pred EEEEEEecc------eeeeecccCcceec---cccCCceEEEEeeEEEEeecccCCCeeEEEEEEcCCCc
Q psy3045 33 FALLCEAQE------NMWFKFIEGSSRKV---AVPLNDRVKQVSGTLIIKEAKVEDSGKYLCVVNNSVGG 93 (267)
Q Consensus 33 v~l~C~~~~------~~W~~~~~~~~~~~---~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~ 93 (267)
+.|.|.+.+ +.|++++....... ......+.....+.|.+......|...|+|.+.+....
T Consensus 2 ~~LtC~a~g~~P~~~ItW~k~g~~l~~~~~~~~~~~~~~t~~~~s~l~~~~~~~d~g~~~tC~v~h~~l~ 71 (83)
T cd07705 2 AKLRCTSSGSKPAANIKWRKGDQELEGAPTSVLEDGNGKTFTVSSSVEFQVTREDDGAEITCSVGHESLH 71 (83)
T ss_pred EEEEEEecCccCCCEeEEEECCEECCCcceeEEECCCCCEEEEEEEEEEEecchhCCCEEEEEEECcccC
Confidence 689999999 99999743221111 00111123333456666666666778999999987643
No 340
>cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells.
Probab=97.68 E-value=0.00028 Score=44.87 Aligned_cols=57 Identities=23% Similarity=0.520 Sum_probs=37.3
Q ss_pred CCCEEEEeEeCCC-CC-ceEEEEECCccCCC---------CCCCeE---EeccCCCCCCeEEEEEEEcCCC
Q psy3045 149 GRPAQFTCKYEGN-PV-KTISWMKDGKPVPD---------HNEPVF---RIDSVRKEDKGMYQCVIRNEQE 205 (267)
Q Consensus 149 g~~v~l~C~~~~~-p~-~~~~W~~~~~~~~~---------~~~~~l---~i~~~~~~d~g~y~C~~~~~~~ 205 (267)
++.++|.|.+.|+ |. ..+.|++++..+.. ..+... ....+...+.+.|+|.+.|...
T Consensus 14 ~~~~~L~C~a~gF~P~~i~v~W~~~g~~~~~~~~~~~~~~~~d~ty~~~s~l~v~~~~~~~ytC~V~H~~~ 84 (93)
T cd07698 14 DGSLTLSCHATGFYPRDIEVTWLRDGEDSVDDVESGEILPNGDGTYQLWVTLEVPPEDKARYSCRVEHSGL 84 (93)
T ss_pred CCcEEEEEEEEEEeCCCcEEEEEECCEECcccccccceEECCCCeEEEEEEEEECCCCCCEEEEEEEeCCC
Confidence 6789999999996 54 38999999853211 111111 1223344577899999988754
No 341
>cd07704 Ig2_Nectin-3-4_like Second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3), nectin-4 (poliovirus receptor related protein 4) and similar proteins. Ig2_Nectin-3-4_like: domain similar to the second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and nectin-4 (poliovirus receptor related protein 4). Nectin-3 and nectin-4 belong to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development. Nect
Probab=97.67 E-value=0.00088 Score=42.53 Aligned_cols=71 Identities=20% Similarity=0.271 Sum_probs=49.1
Q ss_pred eeEEecCCCeEEE-EEEecc------eeeeecccCcceeccccCCceEEEEeeEEEEeecccCCCeeEEEEEEcCCCc
Q psy3045 23 IRFKKPGGESFAL-LCEAQE------NMWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYLCVVNNSVGG 93 (267)
Q Consensus 23 ~~~~v~~g~~v~l-~C~~~~------~~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~ 93 (267)
....+.+|+.+.+ .|.+.+ +.|+.+..|..........++.....+.|.+......|.-.++|.+.+..-.
T Consensus 9 ~~~~~~~g~~~~vA~C~sa~gkPaa~IsW~~~~~G~~~~~~~~~~ngT~TV~S~~~l~p~r~d~G~~vtC~V~H~al~ 86 (97)
T cd07704 9 PSLLIDGGNGTTLAACCAAEGRPAADVTWETNVYGTSESHSQEHPNGTTTVTSEYIWVPSRHANGHPLTCVVSHPALQ 86 (97)
T ss_pred CeeEeecCcceeEEEEEccCCccCCEeEEeCCCCCccceeeecCCCCCEEEEEEEEEEeCHHHCCcEEEEEEeCcccC
Confidence 4677889999999 999888 9999875554322222233334455567777666666667999999987543
No 342
>cd05847 IgC_CH2_IgE CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin E (IgE). IgC_CH2_IgE: The second constant domain of the heavy chain of immunoglobulin E (IgE). The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma, and mu, all consisting of a variable domain (VH) and three (in alpha, delta, and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). The different classes of antibodies vary in their heavy chains; the IgE class has the epsilon type. This domain (Cepsilon2) of IgE is in place of the flexible hinge region found in IgG.
Probab=97.67 E-value=0.00021 Score=45.43 Aligned_cols=64 Identities=14% Similarity=0.190 Sum_probs=39.9
Q ss_pred CCCeEEEEEEecc-------eeeeecccCcceec----cccCCceEEEEeeEEEEeecccCCCeeEEEEEEcCCC
Q psy3045 29 GGESFALLCEAQE-------NMWFKFIEGSSRKV----AVPLNDRVKQVSGTLIIKEAKVEDSGKYLCVVNNSVG 92 (267)
Q Consensus 29 ~g~~v~l~C~~~~-------~~W~~~~~~~~~~~----~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~ 92 (267)
.++.+.|.|.+.+ +.|++++....... .....+......+.|.+..-...+...|+|.+.+...
T Consensus 13 ~~~~~~L~C~a~gFyP~~I~vtW~~dg~~~~~~~~~s~~~~~~~~Ty~~~S~L~v~~~~w~~~~~ytC~V~H~~~ 87 (94)
T cd05847 13 TSETIQLLCLISGYTPGTIEVEWLVDGQVATLVAASTAPQKEEGSTFSTTSELNVTQEDWKSGKTYTCKVTHQGT 87 (94)
T ss_pred CCCCEEEEEEEEeEECCCCEEEEEECCEECcCceeecccEECCCCcEEEEEEEEEchHHhcCCCeEEEEEEECCe
Confidence 4567999999999 89999744321110 1111222333445666665555567899999988653
No 343
>cd05766 IgC_MHC_II_beta Class II major histocompatibility complex (MHC) beta chain immunoglobulin domain. IgC_MHC_II_beta: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II beta chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosome be
Probab=97.66 E-value=0.00038 Score=44.28 Aligned_cols=64 Identities=23% Similarity=0.301 Sum_probs=38.1
Q ss_pred ecCCCeEEEEEEecc-------eeeeecccCcceec----cccCCceEEEEeeEEEEeecccCCCeeEEEEEEcCCCc
Q psy3045 27 KPGGESFALLCEAQE-------NMWFKFIEGSSRKV----AVPLNDRVKQVSGTLIIKEAKVEDSGKYLCVVNNSVGG 93 (267)
Q Consensus 27 v~~g~~v~l~C~~~~-------~~W~~~~~~~~~~~----~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~ 93 (267)
+..|+.++|.|.+.+ +.|++++....... .....+......+.|.+ ...+...|+|.+.+....
T Consensus 11 ~~~~~~~~L~C~~~gFyP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgTy~~~s~L~~---~~~~~~~ysC~V~H~~l~ 85 (94)
T cd05766 11 GSLSHPHLLVCHVWGFYPPEITVKWFKNGQEETEGVVSTELIPNGDWTYQILVMLET---TPSRGDTYTCVVEHSSLQ 85 (94)
T ss_pred ccCCCCeEEEEEEeeecCCCCEEEEEECCeecCCCceecceEECCCCcEEEEEEEEE---cCCCCCEEEEEEEeCCCC
Confidence 346899999999999 89999754322210 00111112222334444 344667999999986543
No 344
>PF08205 C2-set_2: CD80-like C2-set immunoglobulin domain ; InterPro: IPR013162 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the C2-set type domains found in the T-cell antigen CD80, as well as in related proteins. CD80 (B7-1) is a glycoprotein expressed on antigen-presenting cells []. The shared ligands on CD80 and CD86 (B7-2) deliver the co-stimulatory signal through CD28 and CTLA-4 on T-cells, where CD28 augments the T-cell response and CTLA-4 attenuates it [].; PDB: 3S58_A 3O3U_N 3CJJ_A 3S59_A 2PF6_B 2PET_A 3ALP_A 3SKU_D 3U83_A 3U82_B ....
Probab=97.65 E-value=0.00028 Score=44.44 Aligned_cols=64 Identities=16% Similarity=0.272 Sum_probs=39.8
Q ss_pred CCeEEEEEEecc------eeeeecccCc---ceeccccCCceEEEEeeEEEEeecccCCCeeEEEEEEcCCCc
Q psy3045 30 GESFALLCEAQE------NMWFKFIEGS---SRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYLCVVNNSVGG 93 (267)
Q Consensus 30 g~~v~l~C~~~~------~~W~~~~~~~---~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~ 93 (267)
|+.+.|.|.+.+ +.|+.++... ..........+.....+.|.+..-...+...++|.+.+....
T Consensus 14 ~~~~~~~C~s~~~~P~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~S~l~~~~~~~~~~~~~~C~~~~~~~~ 86 (89)
T PF08205_consen 14 GEEVTLTCSSSGGYPPPQITWYLDGGPVVASNTTQSSSPDNGLFTVSSTLTLTPTREDHGKTLTCRASHPALS 86 (89)
T ss_dssp TEEEEEEEEEEEEBS-EEEEEEETTCEECEEEEEEEEETTTTTEEEEEEEEEETTGGGTTEEEEEEEEETTCC
T ss_pred ceEEEEEEEeCCeECCeEEEEEECCCceeeeeeeeeeccCCCcceEEEEEEEEcChHHCCeEEEEEEECCccC
Confidence 789999999888 9999864322 011111122333334456777654445567899999987543
No 345
>cd05719 Ig2_PVR_like Second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig2_PVR_like: domain similar to the second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), these result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus
Probab=97.64 E-value=0.001 Score=42.41 Aligned_cols=68 Identities=13% Similarity=0.213 Sum_probs=41.7
Q ss_pred cCCCeEEEEEEecc------eeeeecccCcceeccccCCceEEEEeeEEEEeecccCCCeeEEEEEEcCCCccE
Q psy3045 28 PGGESFALLCEAQE------NMWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYLCVVNNSVGGES 95 (267)
Q Consensus 28 ~~g~~v~l~C~~~~------~~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~ 95 (267)
.......+.|.+.+ +.|+++..+..........++.....+.|.+......|...|+|.+.|......
T Consensus 13 ~~~~~~va~C~s~~gkP~a~ItW~~~~~~~~~~~~~~~~~g~~tv~S~l~~~p~~~d~G~~~tC~v~h~~l~~~ 86 (95)
T cd05719 13 GGEPVTVATCVSANGKPPATISWETTLGGEAETQSKENPNGTVTVTSEYRLVPSREANGKELTCVVSHPTLQEP 86 (95)
T ss_pred CCCccEEEEEECCCCcCCCEEEEEeCCCCcceeEeecCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCcccCCC
Confidence 34456688999976 999996333322222222333344455677755555556689999998765443
No 346
>cd05884 Ig2_Necl-3 Second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig2_Necl-3: second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Ig domains are likely to participate in ligand binding and recognition.
Probab=97.62 E-value=0.00066 Score=42.07 Aligned_cols=61 Identities=21% Similarity=0.294 Sum_probs=38.4
Q ss_pred EEEEEEecc------eeeeecccCcceec---cccCCceEEEEeeEEEEeecccCCCeeEEEEEEcCCCc
Q psy3045 33 FALLCEAQE------NMWFKFIEGSSRKV---AVPLNDRVKQVSGTLIIKEAKVEDSGKYLCVVNNSVGG 93 (267)
Q Consensus 33 v~l~C~~~~------~~W~~~~~~~~~~~---~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~ 93 (267)
++|.|.+.+ +.|++++....... .....++.....+.|.+......+...|+|.+.+..-.
T Consensus 2 ~~LtC~a~gf~P~~~itW~kng~~l~~~~~~~~~~~~~~t~~~~s~L~~~~~~~d~g~~ytC~v~h~~l~ 71 (83)
T cd05884 2 MQLTCKTSGSKPAADIRWFKNDKEIKDVKYLKEEDANRKTFTVSSTLDFRVDRSDDGVAIICRVDHESLN 71 (83)
T ss_pred EEEEEEeCCccCCCEEEEEECCEECcCceeeEeeCCCCCEEEEEEEEEEEcccccCCCEEEEEEechhcC
Confidence 689999999 89999754322111 11122233344556777655566677999999886543
No 347
>cd07703 Ig2_Nectin-2_like Second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112) and similar proteins. Ig2_Nectin-2_like: domain similar to the second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112). Nectin-2 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development.
Probab=97.61 E-value=0.0011 Score=42.05 Aligned_cols=74 Identities=11% Similarity=0.095 Sum_probs=43.5
Q ss_pred ecCCCeEEEEEEecc------eeeeecccCcceeccccCCceEEEEeeEEEEeecccCCCeeEEEEEEcCCCccEEEEEE
Q psy3045 27 KPGGESFALLCEAQE------NMWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYLCVVNNSVGGESVETVL 100 (267)
Q Consensus 27 v~~g~~v~l~C~~~~------~~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l 100 (267)
......+.+.|.+.+ +.|+++..+..........++.....+.|.+......|...|+|.+.|........+.+
T Consensus 12 ~~~~~~~va~C~s~~gkPaa~IsW~~~~~g~~~~~~~~~~~gt~tv~S~l~~~P~~~d~Gk~ltC~v~h~al~~~~~~~~ 91 (95)
T cd07703 12 AGTIPVPVAKCVSANGRPPARISWSSTLGGNANTTSKENGDGTVTVTSEYSLVPTPEANGKEVTCKVEHETLQEPQLLPV 91 (95)
T ss_pred cCCCccEEEEEEcCCCCCCcEEEEEcCCCCCeeEEEEeCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCcccCCCeEEEE
Confidence 344456789999887 99999743332222212222223334567665555555668999999976554444333
No 348
>cd05770 IgC_beta2m Class I major histocompatibility complex (MHC) beta2-microglobulin. IgC_beta2m: Immunoglobulin-like domain in beta2-Microglobulin (beta2m). Beta2m is the non-covalently bound light chain of the human class I major histocompatibility complex (MHC-I). Beta2m is structured as a beta-sandwich domain composed of two facing beta-sheets (four stranded and three stranded), that is typical of the C-type immunoglobulin superfamily. This structure is stabilized by an intramolecular disulfide bridge connecting two Cys residues in the facing beta -sheets. In vivo, MHC-I continuously exposes beta2m on the cell surface, where it may be released to plasmatic fluids, transported to the kidneys, degraded and then excreted.
Probab=97.60 E-value=0.00045 Score=43.74 Aligned_cols=57 Identities=23% Similarity=0.493 Sum_probs=37.9
Q ss_pred cCCCEEEEeEeCCC-C-CceEEEEECCccCCCC--------CCCeEEe---ccCCCCCCeEEEEEEEcCC
Q psy3045 148 FGRPAQFTCKYEGN-P-VKTISWMKDGKPVPDH--------NEPVFRI---DSVRKEDKGMYQCVIRNEQ 204 (267)
Q Consensus 148 ~g~~v~l~C~~~~~-p-~~~~~W~~~~~~~~~~--------~~~~l~i---~~~~~~d~g~y~C~~~~~~ 204 (267)
.|...+|.|.+.|+ | ...+.|.+||..+... .+.+..+ ..+...+...|+|.+.+..
T Consensus 14 ~g~~~~L~C~a~gFyP~~i~v~W~~dg~~~~~~~~~~~~p~~d~tyq~~s~l~~~~~~~~~ysC~V~H~~ 83 (93)
T cd05770 14 NGKPNVLNCYVTGFHPPDIEIRLLKNGVKIPKVEQSDLSFSKDWTFYLLKSTEFTPTKGDEYACRVRHNS 83 (93)
T ss_pred CCCceEEEEEEEEEeCCCCEEEEEECCEECCCcEECcEEECCCCCEEEEEEEEECCCCCCeEEEEEEECC
Confidence 36667899999986 4 5589999999886521 1111111 1234556678999998864
No 349
>cd07703 Ig2_Nectin-2_like Second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112) and similar proteins. Ig2_Nectin-2_like: domain similar to the second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112). Nectin-2 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development.
Probab=97.60 E-value=0.00061 Score=43.30 Aligned_cols=66 Identities=14% Similarity=0.213 Sum_probs=41.7
Q ss_pred CCEEEEeEeC-CCCCceEEEEECCccCC------CCC-----CCeEEeccCCCCCCeEEEEEEEcCCCCceEEEEEEE
Q psy3045 150 RPAQFTCKYE-GNPVKTISWMKDGKPVP------DHN-----EPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKL 215 (267)
Q Consensus 150 ~~v~l~C~~~-~~p~~~~~W~~~~~~~~------~~~-----~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v 215 (267)
..+.+.|.+. +.|.++|+|+++..... ..+ .+.|.+.....++...|+|.+.|........+.+.+
T Consensus 16 ~~~va~C~s~~gkPaa~IsW~~~~~g~~~~~~~~~~~gt~tv~S~l~~~P~~~d~Gk~ltC~v~h~al~~~~~~~~~l 93 (95)
T cd07703 16 PVPVAKCVSANGRPPARISWSSTLGGNANTTSKENGDGTVTVTSEYSLVPTPEANGKEVTCKVEHETLQEPQLLPVTL 93 (95)
T ss_pred ccEEEEEEcCCCCCCcEEEEEcCCCCCeeEEEEeCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCcccCCCeEEEEEE
Confidence 3488999876 56899999998732211 111 134555444444555999999998765555555544
No 350
>PHA02982 hypothetical protein; Provisional
Probab=97.59 E-value=0.0012 Score=47.16 Aligned_cols=79 Identities=20% Similarity=0.304 Sum_probs=53.2
Q ss_pred eEEecCCCeEEEEEEecc------eeeeecccCcce---------ecc--cc--CC----ceEEEEeeEEEEeecccCCC
Q psy3045 24 RFKKPGGESFALLCEAQE------NMWFKFIEGSSR---------KVA--VP--LN----DRVKQVSGTLIIKEAKVEDS 80 (267)
Q Consensus 24 ~~~v~~g~~v~l~C~~~~------~~W~~~~~~~~~---------~~~--~~--~~----~~~~~~~~~l~i~~~~~~d~ 80 (267)
++....|++|.|.|.... ..|+++++.-.. +.. .+ +. ..+....++|+|+++..+..
T Consensus 33 dv~a~vd~~V~L~C~~~~~~~i~~~~W~~~~~~~la~~~~~~~~iN~~~y~~~~~kd~y~~sv~g~~STLTIkk~~i~N~ 112 (251)
T PHA02982 33 DVNATVDQEVKLQCLFKDADEISRAMWKGDAGFMLAQEANGGTGINAFNYVPGPYKDKYALSVSGNSSTFTMKKPDPQNL 112 (251)
T ss_pred hhhccCCCcEEEEecCCCcchhhhheeeCCCCeEEEeeecCcceeccccccCCccceeEEEEEeccceeEEeccCCcccC
Confidence 566788999999999776 889985321111 000 00 01 11223457999999999999
Q ss_pred eeEEEEEEcCCCc-cEEEEEEEE
Q psy3045 81 GKYLCVVNNSVGG-ESVETVLTV 102 (267)
Q Consensus 81 G~Y~C~~~~~~~~-~~~~~~l~V 102 (267)
|.|+|.+....+. ......|.|
T Consensus 113 GCYtc~~ks~~~k~E~c~kCl~V 135 (251)
T PHA02982 113 GCFTCEAKDAEGKEETCEKCLEI 135 (251)
T ss_pred CceEEEEecCCCchheeheeeeE
Confidence 9999999987655 444666666
No 351
>PHA02633 hypothetical protein; Provisional
Probab=97.59 E-value=0.00029 Score=39.82 Aligned_cols=39 Identities=21% Similarity=0.423 Sum_probs=32.7
Q ss_pred eeEEEEeecccCCCeeEEEEEEcCCCccEEEEEEEEEec
Q psy3045 67 SGTLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTVTAP 105 (267)
Q Consensus 67 ~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~V~~~ 105 (267)
...|+|.++..+|+|.|.|.+.|..-....++.|+|...
T Consensus 17 ~~nLwilpa~~sDSGiYiC~~rn~t~c~~~si~l~V~~~ 55 (63)
T PHA02633 17 CNNMLILNPTQSDSGIYMCITKNETYSDMMKFDLCICLR 55 (63)
T ss_pred cccEEEeccccccCcEEEEEEcCCCeeEEEEEEEEEeec
Confidence 347999999999999999999987766777788887754
No 352
>cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain. IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains.
Probab=97.59 E-value=0.0004 Score=46.29 Aligned_cols=60 Identities=18% Similarity=0.435 Sum_probs=42.1
Q ss_pred eEEEecCCCEEEEeEeCCCC--CceEEEEECC--ccC---------------C---CC----------CCCeEEeccCCC
Q psy3045 143 VQTIDFGRPAQFTCKYEGNP--VKTISWMKDG--KPV---------------P---DH----------NEPVFRIDSVRK 190 (267)
Q Consensus 143 ~~~~~~g~~v~l~C~~~~~p--~~~~~W~~~~--~~~---------------~---~~----------~~~~l~i~~~~~ 190 (267)
...+.+|++++|.|...+.. ...+.||+.. ..+ . .+ ....|+|.++..
T Consensus 6 ~~~v~~G~~vtL~C~~~~~~~~~~~~~WYkQ~~g~~p~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~~ 85 (117)
T cd04981 6 PGLVKPGQSLKLSCKASGFTFTSYGVNWVRQAPGKGLEWIGFINPGGGETYYADSVKGRFTITRDTSKSTVYLQLNSLTP 85 (117)
T ss_pred CeEEcCCCCEEEEEEEeCCCcccceEEEEEECCCCCcEEEEEEecCCCceEeCcccCCcEEEEEEccCCEEEEEECCCCH
Confidence 34788899999999875432 4568999832 111 0 00 113689999999
Q ss_pred CCCeEEEEEEEc
Q psy3045 191 EDKGMYQCVIRN 202 (267)
Q Consensus 191 ~d~g~y~C~~~~ 202 (267)
+|+|.|.|.+..
T Consensus 86 ~Dsa~YyCa~~~ 97 (117)
T cd04981 86 EDTAVYYCARGL 97 (117)
T ss_pred HHCEEEEEEEEc
Confidence 999999998764
No 353
>cd04986 IgC_CH2 CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH2: The second immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=97.56 E-value=0.00026 Score=45.17 Aligned_cols=79 Identities=18% Similarity=0.119 Sum_probs=46.1
Q ss_pred CCcccCCCCceeEEecCCCeEEEEEEecc--------eeeeecccCccee-ccccCCceEEEEeeEEEEeecccCCCeeE
Q psy3045 13 APTFSSVSDIIRFKKPGGESFALLCEAQE--------NMWFKFIEGSSRK-VAVPLNDRVKQVSGTLIIKEAKVEDSGKY 83 (267)
Q Consensus 13 ~P~~~~~~~~~~~~v~~g~~v~l~C~~~~--------~~W~~~~~~~~~~-~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y 83 (267)
+|.+.+.+. ....+..+..++|.|.+.+ +.|.+++...... ......+......+.|.+..-.+.....|
T Consensus 3 ~PsV~l~pP-s~e~l~~~~~atLtClV~~f~~P~~i~V~W~~~g~~~~~~t~~~~~~dgTys~~S~L~v~~~~W~~g~~y 81 (99)
T cd04986 3 KPSLSLQRP-ALEDLLLGSSASLTCTLSGLRDPEGAVFTWTPSGGKEAVQTSAESDQCGCYSVSSVLPGCAEEWNKGEPF 81 (99)
T ss_pred CCEEEEECc-ChHHhCcCCccEEEEEEeccCCCCCeEEEEEECCccCcEEcCcccCCCCCEEEEEEEEeCHHHhcCCCeE
Confidence 344444431 2233447889999999988 8999975431111 11112233334445676665555555679
Q ss_pred EEEEEcCCC
Q psy3045 84 LCVVNNSVG 92 (267)
Q Consensus 84 ~C~~~~~~~ 92 (267)
+|.+.+...
T Consensus 82 tC~V~H~~l 90 (99)
T cd04986 82 ACTVTHPEG 90 (99)
T ss_pred EEEEECCCc
Confidence 999998653
No 354
>cd05767 IgC_MHC_II_alpha Class II major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_II_alpha: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II alpha chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosom
Probab=97.56 E-value=0.00046 Score=43.81 Aligned_cols=54 Identities=26% Similarity=0.713 Sum_probs=37.0
Q ss_pred cCCCEEEEeEeCCC-C-CceEEEEECCccCCCC---------CC------CeEEeccCCCCCCeEEEEEEEcCC
Q psy3045 148 FGRPAQFTCKYEGN-P-VKTISWMKDGKPVPDH---------NE------PVFRIDSVRKEDKGMYQCVIRNEQ 204 (267)
Q Consensus 148 ~g~~v~l~C~~~~~-p-~~~~~W~~~~~~~~~~---------~~------~~l~i~~~~~~d~g~y~C~~~~~~ 204 (267)
.++..+|.|.+.|+ | ...++|.+||..+..+ .. ..|.+ ...+...|+|.+.+..
T Consensus 14 ~~~~~tL~C~a~gFyP~~I~v~W~~~g~~~~~~~~~~~~~~~~Dgty~~~s~L~v---~~~~~~~ytC~V~H~~ 84 (94)
T cd05767 14 LGEPNTLICFVDNFFPPVLNVTWLKNGVPVTDGVSETRYYPRQDLSFQKFSYLNF---TPEEGDIYSCIVEHWG 84 (94)
T ss_pred CCCCeEEEEEEEEEECCcCEEEEEECCeEccCceEEeeeEeCCCCcEEEEEEEEE---ECCCCCeEEEEEEeCC
Confidence 35668999999996 5 4589999999887532 11 12333 3345568999998865
No 355
>smart00407 IGc1 Immunoglobulin C-Type.
Probab=97.55 E-value=0.00061 Score=41.36 Aligned_cols=60 Identities=18% Similarity=0.304 Sum_probs=37.2
Q ss_pred eEEEEEEecc-------eeeeecccCcceecc----ccCCceEEEEeeEEEEeecccCCCeeEEEEEEcCC
Q psy3045 32 SFALLCEAQE-------NMWFKFIEGSSRKVA----VPLNDRVKQVSGTLIIKEAKVEDSGKYLCVVNNSV 91 (267)
Q Consensus 32 ~v~l~C~~~~-------~~W~~~~~~~~~~~~----~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~ 91 (267)
.++|.|.+.+ +.|++++........ ....+......+.|.+......+...|+|.+.+..
T Consensus 1 ~~~L~C~a~gf~P~~i~v~W~k~g~~~~~~~~~~~~~~~~~gt~~~~s~L~v~~~~~~~~~~~tC~V~H~~ 71 (75)
T smart00407 1 KATLVCLVSGFYPPDITVTWLRNGQEVTSGVSTTDPLKNSDGTYFLSSYLTVSASTWESGDTYTCQVTHEG 71 (75)
T ss_pred CeEEEEEEEeEeCCCCEEEEEECCEECCCCEEECceEECCCCCEEEEEEEEEccccCCCCCEEEEEEEEcC
Confidence 3689999999 899996442111100 01123333344567776656677789999998764
No 356
>cd05767 IgC_MHC_II_alpha Class II major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_II_alpha: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II alpha chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosom
Probab=97.55 E-value=0.0011 Score=42.16 Aligned_cols=61 Identities=25% Similarity=0.273 Sum_probs=35.9
Q ss_pred cCCCeEEEEEEecc-------eeeeecccCcceec----cccCCceEEEEeeEEEEeecccCCCeeEEEEEEcCC
Q psy3045 28 PGGESFALLCEAQE-------NMWFKFIEGSSRKV----AVPLNDRVKQVSGTLIIKEAKVEDSGKYLCVVNNSV 91 (267)
Q Consensus 28 ~~g~~v~l~C~~~~-------~~W~~~~~~~~~~~----~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~ 91 (267)
..|+..+|.|.+.+ ++|.+++....... .....+........|.+. ..+...|+|.+.+..
T Consensus 13 ~~~~~~tL~C~a~gFyP~~I~v~W~~~g~~~~~~~~~~~~~~~~Dgty~~~s~L~v~---~~~~~~ytC~V~H~~ 84 (94)
T cd05767 13 ELGEPNTLICFVDNFFPPVLNVTWLKNGVPVTDGVSETRYYPRQDLSFQKFSYLNFT---PEEGDIYSCIVEHWG 84 (94)
T ss_pred cCCCCeEEEEEEEEEECCcCEEEEEECCeEccCceEEeeeEeCCCCcEEEEEEEEEE---CCCCCeEEEEEEeCC
Confidence 34667899999999 89999744321110 011112222223445554 345669999998864
No 357
>cd07696 IgC_CH3 CH3 domain (third constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH3: The third immunoglobulin constant domain (IgC) of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=97.53 E-value=0.00066 Score=43.33 Aligned_cols=68 Identities=15% Similarity=0.152 Sum_probs=41.5
Q ss_pred EecCCCeEEEEEEecc--------eeeeecccCcce---eccccCCceEEEEeeEEEEeecccCCCeeEEEEEEcCCCc
Q psy3045 26 KKPGGESFALLCEAQE--------NMWFKFIEGSSR---KVAVPLNDRVKQVSGTLIIKEAKVEDSGKYLCVVNNSVGG 93 (267)
Q Consensus 26 ~v~~g~~v~l~C~~~~--------~~W~~~~~~~~~---~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~ 93 (267)
.+..|+.++|.|.+.+ +.|++++..... .......+......+.|.+..-.+.+...|+|.+.+....
T Consensus 10 ~l~~~~~~tLtC~v~gf~yP~~i~v~W~r~~~~~~~~~~~~~~~~~dgty~~~s~l~v~~~~w~~g~~ysC~V~H~~l~ 88 (96)
T cd07696 10 QLLLTKSVKLTCLVTNLTSPEGVNVTWTRGSGEPVKASIQPPESHNNATLSVTSTLNVSTDDWISGDTFQCKVTHPDLP 88 (96)
T ss_pred HhccCCCeEEEEEEeCCCCCCCcEEEEEECCeEeeeEEecccccCCCCCEEEEEEEEeCHHHccCCCcEEEEEECCCCC
Confidence 3556899999999998 799996421111 1111122223334455666655555566899999987543
No 358
>cd04985 IgC_CH1 CH1 domain (first constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH1: The first immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fab antigen-binding fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=97.53 E-value=0.00076 Score=42.97 Aligned_cols=62 Identities=18% Similarity=0.284 Sum_probs=37.5
Q ss_pred CCCeEEEEEEecc-------eeeeecccCcceec---cccCC-ceEEEEeeEEEEeecccCCCeeEEEEEEcCC
Q psy3045 29 GGESFALLCEAQE-------NMWFKFIEGSSRKV---AVPLN-DRVKQVSGTLIIKEAKVEDSGKYLCVVNNSV 91 (267)
Q Consensus 29 ~g~~v~l~C~~~~-------~~W~~~~~~~~~~~---~~~~~-~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~ 91 (267)
.++.++|.|.+.+ +.|++++.. .... ..... +........|.+..........|+|.+.+..
T Consensus 15 ~~~~~~L~C~a~gFyP~~i~vtW~k~g~~-~~~~~~~~~~~~~dgty~~~s~L~v~~~~w~~~~~ytC~V~H~~ 87 (95)
T cd04985 15 SSDSVTLGCLATGFLPEPVTFTWNSGSNS-TSGVKTYPAVLQSGGLYTASSQLTVPASEWKGKESFYCKVEHPS 87 (95)
T ss_pred CCCcEEEEEEEeeEECCCcEEEEeECCEE-CCCcEECCCEeCCCCCEEEEEEEEEeHHHcCCCCcEEEEEEeCC
Confidence 4677999999999 899997553 1111 00111 2222333456665544334668999999864
No 359
>cd05770 IgC_beta2m Class I major histocompatibility complex (MHC) beta2-microglobulin. IgC_beta2m: Immunoglobulin-like domain in beta2-Microglobulin (beta2m). Beta2m is the non-covalently bound light chain of the human class I major histocompatibility complex (MHC-I). Beta2m is structured as a beta-sandwich domain composed of two facing beta-sheets (four stranded and three stranded), that is typical of the C-type immunoglobulin superfamily. This structure is stabilized by an intramolecular disulfide bridge connecting two Cys residues in the facing beta -sheets. In vivo, MHC-I continuously exposes beta2m on the cell surface, where it may be released to plasmatic fluids, transported to the kidneys, degraded and then excreted.
Probab=97.52 E-value=0.00055 Score=43.34 Aligned_cols=61 Identities=16% Similarity=0.087 Sum_probs=35.7
Q ss_pred ecCCCeEEEEEEecc-------eeeeecccCcceecc----ccCCceEEEEeeEEEEeecccCCCeeEEEEEEcCC
Q psy3045 27 KPGGESFALLCEAQE-------NMWFKFIEGSSRKVA----VPLNDRVKQVSGTLIIKEAKVEDSGKYLCVVNNSV 91 (267)
Q Consensus 27 v~~g~~v~l~C~~~~-------~~W~~~~~~~~~~~~----~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~ 91 (267)
+..|...+|.|.+.+ +.|++|+.... ... ....+........|. +...+...|+|.+.+..
T Consensus 12 ~~~g~~~~L~C~a~gFyP~~i~v~W~~dg~~~~-~~~~~~~~p~~d~tyq~~s~l~---~~~~~~~~ysC~V~H~~ 83 (93)
T cd05770 12 AENGKPNVLNCYVTGFHPPDIEIRLLKNGVKIP-KVEQSDLSFSKDWTFYLLKSTE---FTPTKGDEYACRVRHNS 83 (93)
T ss_pred CcCCCceEEEEEEEEEeCCCCEEEEEECCEECC-CcEECcEEECCCCCEEEEEEEE---ECCCCCCeEEEEEEECC
Confidence 345777899999999 89999744322 110 001111111122333 34567788999999854
No 360
>cd07692 Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of CD3 epsilon chain. Ig_CD3_epsilon; immunoglobulin (Ig)-like domain of CD3 epsilon chain. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=97.51 E-value=0.00017 Score=41.51 Aligned_cols=50 Identities=20% Similarity=0.316 Sum_probs=32.9
Q ss_pred cCCCeEEEEEEecc--eeeeecccCcceeccccCCceEEEEeeEEEEeecccCCCeeEEEEEEcC
Q psy3045 28 PGGESFALLCEAQE--NMWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYLCVVNNS 90 (267)
Q Consensus 28 ~~g~~v~l~C~~~~--~~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~ 90 (267)
-.|.+|+|+|.... +.|.++++.. .. .+..+.+.+-. ++.|.|+|.+.+.
T Consensus 5 isGTtVtlTCP~~~~~i~W~~n~~~~--------~g----~~~~~~~~~~~-e~~G~Y~C~~~~~ 56 (65)
T cd07692 5 ISGTTVTVTCPLSGDDIKWKKNDQVS--------QG----SDEKYLSLNHF-SSSGYYHCTADNA 56 (65)
T ss_pred EeccEEEEECCCCCCCceEEeCCccC--------CC----CCceEEeeccC-CCCceEEEEeCCC
Confidence 36899999998655 9999963211 00 11234444444 8899999999543
No 361
>PF08205 C2-set_2: CD80-like C2-set immunoglobulin domain ; InterPro: IPR013162 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the C2-set type domains found in the T-cell antigen CD80, as well as in related proteins. CD80 (B7-1) is a glycoprotein expressed on antigen-presenting cells []. The shared ligands on CD80 and CD86 (B7-2) deliver the co-stimulatory signal through CD28 and CTLA-4 on T-cells, where CD28 augments the T-cell response and CTLA-4 attenuates it [].; PDB: 3S58_A 3O3U_N 3CJJ_A 3S59_A 2PF6_B 2PET_A 3ALP_A 3SKU_D 3U83_A 3U82_B ....
Probab=97.51 E-value=0.00026 Score=44.61 Aligned_cols=58 Identities=26% Similarity=0.531 Sum_probs=40.6
Q ss_pred CCCEEEEeEeC-CCCCceEEEEECCccCCC---------CC-----CCeEEeccCCCCCCeEEEEEEEcCCCC
Q psy3045 149 GRPAQFTCKYE-GNPVKTISWMKDGKPVPD---------HN-----EPVFRIDSVRKEDKGMYQCVIRNEQES 206 (267)
Q Consensus 149 g~~v~l~C~~~-~~p~~~~~W~~~~~~~~~---------~~-----~~~l~i~~~~~~d~g~y~C~~~~~~~~ 206 (267)
|+.+.+.|.+. ++|.+.++|+.++..+.. .. .+.|.+..-..++...++|.|.+..-.
T Consensus 14 ~~~~~~~C~s~~~~P~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~S~l~~~~~~~~~~~~~~C~~~~~~~~ 86 (89)
T PF08205_consen 14 GEEVTLTCSSSGGYPPPQITWYLDGGPVVASNTTQSSSPDNGLFTVSSTLTLTPTREDHGKTLTCRASHPALS 86 (89)
T ss_dssp TEEEEEEEEEEEEBS-EEEEEEETTCEECEEEEEEEEETTTTTEEEEEEEEEETTGGGTTEEEEEEEEETTCC
T ss_pred ceEEEEEEEeCCeECCeEEEEEECCCceeeeeeeeeeccCCCcceEEEEEEEEcChHHCCeEEEEEEECCccC
Confidence 67899999865 568999999999987721 11 134555544445667999999997644
No 362
>PF07654 C1-set: Immunoglobulin C1-set domain; InterPro: IPR003597 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C1-set domains, which are classical Ig-like domains resembling the antibody constant domain. C1-set domains are found almost exclusively in molecules involved in the immune system, such as in immunoglobulin light and heavy chains, in the major histocompatibility complex (MHC) class I and II complex molecules [, ], and in various T-cell receptors.; PDB: 3BVN_D 3BXN_A 3PWV_E 3L9R_F 2XFX_B 1BMG_A 1K8I_A 3M1B_G 3M17_C 1EXU_A ....
Probab=97.46 E-value=0.0016 Score=40.39 Aligned_cols=62 Identities=21% Similarity=0.308 Sum_probs=38.8
Q ss_pred CCCeEEEEEEecc-------eeeeecccCcce----eccccCCceEEEEeeEEEEeecccCCCeeEEEEEEcCCCc
Q psy3045 29 GGESFALLCEAQE-------NMWFKFIEGSSR----KVAVPLNDRVKQVSGTLIIKEAKVEDSGKYLCVVNNSVGG 93 (267)
Q Consensus 29 ~g~~v~l~C~~~~-------~~W~~~~~~~~~----~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~ 93 (267)
.++.+.|.|.+.+ +.|++++..... .......++.....+.|.+. ..+...|+|.+.+....
T Consensus 7 ~~~~~~L~C~v~~f~P~~i~v~W~~~~~~~~~~~~~~~~~~~~dgty~~~s~l~v~---~~~~~~ysC~V~H~~l~ 79 (83)
T PF07654_consen 7 LGGSVTLTCLVSGFYPKDITVTWLKNGKEVTEGVETTPPPPNSDGTYSVTSSLTVT---WNSGDEYSCRVTHESLP 79 (83)
T ss_dssp STSEEEEEEEEEEEBSSTEEEEEEETTEEETTTEEEEEEEEETTSEEEEEEEEEEE---TTTTGGEEEEEEETTSS
T ss_pred CCCCEEEEEEEEEEECCCcEEEEEeccceeeeeeeecccccccccceeeeEEEEec---CCCCCEEEEEEEECCCC
Confidence 4899999999999 999996432211 11111123333344456555 56667999999987543
No 363
>PF07654 C1-set: Immunoglobulin C1-set domain; InterPro: IPR003597 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C1-set domains, which are classical Ig-like domains resembling the antibody constant domain. C1-set domains are found almost exclusively in molecules involved in the immune system, such as in immunoglobulin light and heavy chains, in the major histocompatibility complex (MHC) class I and II complex molecules [, ], and in various T-cell receptors.; PDB: 3BVN_D 3BXN_A 3PWV_E 3L9R_F 2XFX_B 1BMG_A 1K8I_A 3M1B_G 3M17_C 1EXU_A ....
Probab=97.43 E-value=0.00035 Score=43.38 Aligned_cols=56 Identities=25% Similarity=0.557 Sum_probs=39.2
Q ss_pred cCCCEEEEeEeCCC-C-CceEEEEECCccCCCCC---------C------CeEEeccCCCCCCeEEEEEEEcCCCC
Q psy3045 148 FGRPAQFTCKYEGN-P-VKTISWMKDGKPVPDHN---------E------PVFRIDSVRKEDKGMYQCVIRNEQES 206 (267)
Q Consensus 148 ~g~~v~l~C~~~~~-p-~~~~~W~~~~~~~~~~~---------~------~~l~i~~~~~~d~g~y~C~~~~~~~~ 206 (267)
.++.+.|.|.+.++ | ...+.|++++..+.... + +.|.+. ..+...|+|.+.+....
T Consensus 7 ~~~~~~L~C~v~~f~P~~i~v~W~~~~~~~~~~~~~~~~~~~~dgty~~~s~l~v~---~~~~~~ysC~V~H~~l~ 79 (83)
T PF07654_consen 7 LGGSVTLTCLVSGFYPKDITVTWLKNGKEVTEGVETTPPPPNSDGTYSVTSSLTVT---WNSGDEYSCRVTHESLP 79 (83)
T ss_dssp STSEEEEEEEEEEEBSSTEEEEEEETTEEETTTEEEEEEEEETTSEEEEEEEEEEE---TTTTGGEEEEEEETTSS
T ss_pred CCCCEEEEEEEEEEECCCcEEEEEeccceeeeeeeecccccccccceeeeEEEEec---CCCCCEEEEEEEECCCC
Confidence 37889999999886 5 44899999998765321 1 233333 55566899999887643
No 364
>cd07697 IgC_TCR_gamma T cell receptor (TCR) gamma chain constant immunoglobulin domain. IgC_TCR_gamma; immunoglobulin (Ig) constant (C) domain of the gamma chain of gamma-delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha-beta TCRs but a small subset contain gamma-delta TCRs. Alpha-beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma-delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma-delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds.
Probab=97.43 E-value=0.00035 Score=44.47 Aligned_cols=58 Identities=19% Similarity=0.407 Sum_probs=36.3
Q ss_pred ecCCCEEEEeEeCCC-C-CceEEEEECCccCCCC--------CCCeEEe---ccCCCC-CCeEEEEEEEcCC
Q psy3045 147 DFGRPAQFTCKYEGN-P-VKTISWMKDGKPVPDH--------NEPVFRI---DSVRKE-DKGMYQCVIRNEQ 204 (267)
Q Consensus 147 ~~g~~v~l~C~~~~~-p-~~~~~W~~~~~~~~~~--------~~~~l~i---~~~~~~-d~g~y~C~~~~~~ 204 (267)
..++.++|.|.+.++ | ...++|.+||..+..+ +..+..+ ..+..+ ....|+|.+.+..
T Consensus 14 ~~~~~~tL~C~a~gFyP~~I~v~W~kng~~~~~~~~~~~~~~~~dty~~~S~L~vt~~~~~~~ysC~V~H~g 85 (96)
T cd07697 14 EKQGQGIYLCLLENFFPDVIQVHWREGNSPSILGSQKSEKDKDNDVYSTTSWLTVTKDSLGKKFRCIYKHEG 85 (96)
T ss_pred ccCCCEEEEEEEEEEeCCCeEEEEEECCEECcCCeEeccEecCCCEEEEEEEEEECchhCCCeEEEEEEECC
Confidence 346778999999986 4 4588999999876432 1112221 122332 2346999998854
No 365
>PHA02633 hypothetical protein; Provisional
Probab=97.39 E-value=0.00078 Score=38.12 Aligned_cols=41 Identities=24% Similarity=0.277 Sum_probs=33.5
Q ss_pred CCCCCCeEEeccCCCCCCeEEEEEEEcCCCCceEEEEEEEe
Q psy3045 176 PDHNEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLG 216 (267)
Q Consensus 176 ~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v~ 216 (267)
+..+...|.|-++..+|+|.|.|...|..-....++.+.|.
T Consensus 13 p~~~~~nLwilpa~~sDSGiYiC~~rn~t~c~~~si~l~V~ 53 (63)
T PHA02633 13 LIDNCNNMLILNPTQSDSGIYMCITKNETYSDMMKFDLCIC 53 (63)
T ss_pred cccccccEEEeccccccCcEEEEEEcCCCeeEEEEEEEEEe
Confidence 33466788899999999999999999987777777777764
No 366
>cd07704 Ig2_Nectin-3-4_like Second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3), nectin-4 (poliovirus receptor related protein 4) and similar proteins. Ig2_Nectin-3-4_like: domain similar to the second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and nectin-4 (poliovirus receptor related protein 4). Nectin-3 and nectin-4 belong to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development. Nect
Probab=97.38 E-value=0.0021 Score=40.86 Aligned_cols=68 Identities=16% Similarity=0.290 Sum_probs=42.5
Q ss_pred EEEecCCCEEE-EeEeC-CCCCceEEEEECCccCC-----CCCC------CeEEeccCCCCCCeEEEEEEEcCCCCceEE
Q psy3045 144 QTIDFGRPAQF-TCKYE-GNPVKTISWMKDGKPVP-----DHNE------PVFRIDSVRKEDKGMYQCVIRNEQESAQAS 210 (267)
Q Consensus 144 ~~~~~g~~v~l-~C~~~-~~p~~~~~W~~~~~~~~-----~~~~------~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~ 210 (267)
..+..|+.+.+ .|.+. +.|.++|+|+.+..... ...+ +.+.+......|.-.++|.+.|..-.....
T Consensus 11 ~~~~~g~~~~vA~C~sa~gkPaa~IsW~~~~~G~~~~~~~~~~ngT~TV~S~~~l~p~r~d~G~~vtC~V~H~al~~~~~ 90 (97)
T cd07704 11 LLIDGGNGTTLAACCAAEGRPAADVTWETNVYGTSESHSQEHPNGTTTVTSEYIWVPSRHANGHPLTCVVSHPALQQDFR 90 (97)
T ss_pred eEeecCcceeEEEEEccCCccCCEeEEeCCCCCccceeeecCCCCCEEEEEEEEEEeCHHHCCcEEEEEEeCcccCCCce
Confidence 36677888888 89865 56899999998632211 1111 234444344445559999999986543333
Q ss_pred E
Q psy3045 211 G 211 (267)
Q Consensus 211 ~ 211 (267)
.
T Consensus 91 ~ 91 (97)
T cd07704 91 I 91 (97)
T ss_pred e
Confidence 3
No 367
>cd05719 Ig2_PVR_like Second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig2_PVR_like: domain similar to the second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), these result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus
Probab=97.36 E-value=0.0021 Score=40.95 Aligned_cols=66 Identities=21% Similarity=0.315 Sum_probs=41.1
Q ss_pred CCEEEEeEeC-CCCCceEEEEECCccCC------CCC-----CCeEEeccCCCCCCeEEEEEEEcCCCCceEEEEEEE
Q psy3045 150 RPAQFTCKYE-GNPVKTISWMKDGKPVP------DHN-----EPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKL 215 (267)
Q Consensus 150 ~~v~l~C~~~-~~p~~~~~W~~~~~~~~------~~~-----~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v 215 (267)
....+.|.+. |.|.++|+|+++..... ..+ .+.|.+.....++...|+|.+.|..........+.+
T Consensus 16 ~~~va~C~s~~gkP~a~ItW~~~~~~~~~~~~~~~~~g~~tv~S~l~~~p~~~d~G~~~tC~v~h~~l~~~~~~~~~L 93 (95)
T cd05719 16 PVTVATCVSANGKPPATISWETTLGGEAETQSKENPNGTVTVTSEYRLVPSREANGKELTCVVSHPTLQEPQRFSVTL 93 (95)
T ss_pred ccEEEEEECCCCcCCCEEEEEeCCCCcceeEeecCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCcccCCCeEEEEEe
Confidence 4478899985 67999999999721110 011 134555444444555999999998755554444443
No 368
>cd04985 IgC_CH1 CH1 domain (first constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH1: The first immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fab antigen-binding fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=97.35 E-value=0.00086 Score=42.71 Aligned_cols=56 Identities=13% Similarity=0.308 Sum_probs=35.5
Q ss_pred cCCCEEEEeEeCCC-C-CceEEEEECCccCCCC---------CC------CeEEeccCCCCCCeEEEEEEEcCC
Q psy3045 148 FGRPAQFTCKYEGN-P-VKTISWMKDGKPVPDH---------NE------PVFRIDSVRKEDKGMYQCVIRNEQ 204 (267)
Q Consensus 148 ~g~~v~l~C~~~~~-p-~~~~~W~~~~~~~~~~---------~~------~~l~i~~~~~~d~g~y~C~~~~~~ 204 (267)
.++.++|.|.+.++ | ...++|++||.. ..+ ++ +.|.+..........|+|.+.+..
T Consensus 15 ~~~~~~L~C~a~gFyP~~i~vtW~k~g~~-~~~~~~~~~~~~~dgty~~~s~L~v~~~~w~~~~~ytC~V~H~~ 87 (95)
T cd04985 15 SSDSVTLGCLATGFLPEPVTFTWNSGSNS-TSGVKTYPAVLQSGGLYTASSQLTVPASEWKGKESFYCKVEHPS 87 (95)
T ss_pred CCCcEEEEEEEeeEECCCcEEEEeECCEE-CCCcEECCCEeCCCCCEEEEEEEEEeHHHcCCCCcEEEEEEeCC
Confidence 36679999999987 4 458999999986 221 01 122222222223457888888865
No 369
>PF08204 V-set_CD47: CD47 immunoglobulin-like domain; InterPro: IPR013270 This family represents the CD47 leukocyte antigen V-set like Ig domain [, ].; PDB: 2VSC_B 2JJS_D 2JJT_C.
Probab=97.34 E-value=0.00023 Score=47.42 Aligned_cols=77 Identities=10% Similarity=0.125 Sum_probs=41.7
Q ss_pred EecCCCeEEEEEEecc----------eeeeecccCcc-------ee-ccccCC---ceEEEEeeEEEEeecccCCCeeEE
Q psy3045 26 KKPGGESFALLCEAQE----------NMWFKFIEGSS-------RK-VAVPLN---DRVKQVSGTLIIKEAKVEDSGKYL 84 (267)
Q Consensus 26 ~v~~g~~v~l~C~~~~----------~~W~~~~~~~~-------~~-~~~~~~---~~~~~~~~~l~i~~~~~~d~G~Y~ 84 (267)
...-+++|.|.|.+.. +.|..+++..- .. ...... ..+..++.+|.+.....- .|+|+
T Consensus 23 ~t~CN~tV~IPC~v~n~~~~ni~~m~VkWk~~~~~If~~dg~~~~~~~~~f~sa~i~~l~kG~aSL~~~~~~a~-~GnYT 101 (130)
T PF08204_consen 23 YTVCNDTVVIPCFVNNLEANNISEMYVKWKFKNKDIFIFDGTNNKSTSDNFPSAKISELLKGNASLKMDKSDAV-EGNYT 101 (130)
T ss_dssp E-TT-SEEEE--BBSS---SSGGGEEEEEEETTEEEEEEETTTTEEEEGGGTT-BEGGGGGTB--EEEEHHHHH--EEEE
T ss_pred EEecCCCEEEEeEeccccccccceEEEEEEECCeEEEEEcCccceecccCccccchhHhhCCCEEEEEcchhcc-ccceE
Confidence 5567899999999966 89987532110 00 000001 112234457888775444 89999
Q ss_pred EEEEcCCCccEEEEEEEEE
Q psy3045 85 CVVNNSVGGESVETVLTVT 103 (267)
Q Consensus 85 C~~~~~~~~~~~~~~l~V~ 103 (267)
|.+.......+..+.|...
T Consensus 102 CeVt~~~~ege~~i~Lk~~ 120 (130)
T PF08204_consen 102 CEVTELSREGETTIELKYR 120 (130)
T ss_dssp EEEEETTEEEEEEEEEEE-
T ss_pred EEEEecCCCceEEEEEEEE
Confidence 9998877666666666553
No 370
>cd07697 IgC_TCR_gamma T cell receptor (TCR) gamma chain constant immunoglobulin domain. IgC_TCR_gamma; immunoglobulin (Ig) constant (C) domain of the gamma chain of gamma-delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha-beta TCRs but a small subset contain gamma-delta TCRs. Alpha-beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma-delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma-delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds.
Probab=97.33 E-value=0.0011 Score=42.21 Aligned_cols=63 Identities=16% Similarity=0.110 Sum_probs=35.9
Q ss_pred EecCCCeEEEEEEecc-------eeeeecccCccee----ccccCCceEEEEeeEEEEeecccCCCeeEEEEEEcCC
Q psy3045 26 KKPGGESFALLCEAQE-------NMWFKFIEGSSRK----VAVPLNDRVKQVSGTLIIKEAKVEDSGKYLCVVNNSV 91 (267)
Q Consensus 26 ~v~~g~~v~l~C~~~~-------~~W~~~~~~~~~~----~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~ 91 (267)
.+..+..++|.|.+.+ +.|.+++...... .....++ .....+.|.+..-. ....|+|.+.+..
T Consensus 12 e~~~~~~~tL~C~a~gFyP~~I~v~W~kng~~~~~~~~~~~~~~~~d-ty~~~S~L~vt~~~--~~~~ysC~V~H~g 85 (96)
T cd07697 12 EIEKQGQGIYLCLLENFFPDVIQVHWREGNSPSILGSQKSEKDKDND-VYSTTSWLTVTKDS--LGKKFRCIYKHEG 85 (96)
T ss_pred HHccCCCEEEEEEEEEEeCCCeEEEEEECCEECcCCeEeccEecCCC-EEEEEEEEEECchh--CCCeEEEEEEECC
Confidence 3344678999999999 8999974432111 1111122 22333455554332 2345999998843
No 371
>cd04986 IgC_CH2 CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH2: The second immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=97.31 E-value=0.00039 Score=44.40 Aligned_cols=59 Identities=17% Similarity=0.360 Sum_probs=37.8
Q ss_pred EecCCCEEEEeEeCCC--C-CceEEEEECCccCCC-------CCC------CeEEeccCCCCCCeEEEEEEEcCCC
Q psy3045 146 IDFGRPAQFTCKYEGN--P-VKTISWMKDGKPVPD-------HNE------PVFRIDSVRKEDKGMYQCVIRNEQE 205 (267)
Q Consensus 146 ~~~g~~v~l~C~~~~~--p-~~~~~W~~~~~~~~~-------~~~------~~l~i~~~~~~d~g~y~C~~~~~~~ 205 (267)
...++.++|.|.+.++ | ...+.|.++|.. .. ..+ +.|.+..-.......|+|.+.|...
T Consensus 16 l~~~~~atLtClV~~f~~P~~i~V~W~~~g~~-~~~~t~~~~~~dgTys~~S~L~v~~~~W~~g~~ytC~V~H~~l 90 (99)
T cd04986 16 LLLGSSASLTCTLSGLRDPEGAVFTWTPSGGK-EAVQTSAESDQCGCYSVSSVLPGCAEEWNKGEPFACTVTHPEG 90 (99)
T ss_pred hCcCCccEEEEEEeccCCCCCeEEEEEECCcc-CcEEcCcccCCCCCEEEEEEEEeCHHHhcCCCeEEEEEECCCc
Confidence 4457889999999885 3 458999998864 11 111 2343333233444579999988754
No 372
>smart00406 IGv Immunoglobulin V-Type.
Probab=97.27 E-value=0.0007 Score=41.58 Aligned_cols=22 Identities=36% Similarity=0.771 Sum_probs=18.7
Q ss_pred CCCeEEeccCCCCCCeEEEEEE
Q psy3045 179 NEPVFRIDSVRKEDKGMYQCVI 200 (267)
Q Consensus 179 ~~~~l~i~~~~~~d~g~y~C~~ 200 (267)
....|.|.+++.+|+|.|.|.+
T Consensus 60 ~~~~L~i~~~~~~D~G~Y~C~v 81 (81)
T smart00406 60 NDVSLTISNLRVEDTGTYYCAV 81 (81)
T ss_pred CEEEEEEcCCCHHHCEEEEEcC
Confidence 3467999999999999999963
No 373
>PF11465 Receptor_2B4: Natural killer cell receptor 2B4; InterPro: IPR024303 2B4 is a transmembrane receptor which is expressed primarily on natural killer (NK) cells. It plays a role in activating NK-mediated cytotoxicity through its interaction with CD48 on target cells in a subset of CD8 T cells []. The structure of 2B4 consists of an immunoglobulin variable domain fold and contains two beta-sheets. One of the beta-sheets, the six-stranded sheet, contains structural features that may have a role in ligand recognition and receptor function []. This entry represents the 2B4 immunoglobulin domain.; GO: 0005488 binding; PDB: 2PTU_D 2PTT_B 1Z2K_A.
Probab=97.27 E-value=0.002 Score=40.96 Aligned_cols=43 Identities=33% Similarity=0.393 Sum_probs=30.0
Q ss_pred CceEEE--EeeEEEEeecccCCCeeEEEEEEcCCCcc-EEEEEEEE
Q psy3045 60 NDRVKQ--VSGTLIIKEAKVEDSGKYLCVVNNSVGGE-SVETVLTV 102 (267)
Q Consensus 60 ~~~~~~--~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~~l~V 102 (267)
..|+.. .+-+|.|+.++..|+|.|.-++++..|.. .....+.|
T Consensus 61 n~r~~F~~enlaLlIkaAq~qDSG~Y~LEvT~~sG~V~~~~FqVsV 106 (108)
T PF11465_consen 61 NNRFNFTSENLALLIKAAQPQDSGLYCLEVTNESGKVCTKNFQVSV 106 (108)
T ss_dssp HHHEEEETTTTEEEESS-SGGG-EEEEEEEEETTSCEEEEEEEEEE
T ss_pred cceEeeeccCceEEEeecCcccCceEEEEEEcCCCcEEEEEEEEEe
Confidence 445544 34589999999999999999999988874 34444444
No 374
>KOG1480|consensus
Probab=97.11 E-value=0.0004 Score=59.07 Aligned_cols=62 Identities=23% Similarity=0.467 Sum_probs=48.9
Q ss_pred EEecCCCEEEEeEe-CCCCCceEEEEECCccCCCCC------CCeEEeccCCCCCCeEEEEEEEcCCCC
Q psy3045 145 TIDFGRPAQFTCKY-EGNPVKTISWMKDGKPVPDHN------EPVFRIDSVRKEDKGMYQCVIRNEQES 206 (267)
Q Consensus 145 ~~~~g~~v~l~C~~-~~~p~~~~~W~~~~~~~~~~~------~~~l~i~~~~~~d~g~y~C~~~~~~~~ 206 (267)
.|..+..+.+.|.. .+.|...+.|++++..+.... ...+.+..+...|.|.|+|+|.|....
T Consensus 140 ~V~~~s~~~l~cr~pe~~paae~~w~k~e~~~~pd~n~~~~~d~~li~~~arlsd~~nytc~a~ni~~~ 208 (909)
T KOG1480|consen 140 EVQEETTLQLPCRPPEGDPKAEVEWLKNEVVIDPDANVIRASDHNLIISQARLSDSGNYTCEATNIVAK 208 (909)
T ss_pred eecccccccccccCcccchhhhhhccccCCCCCccccchhhhcCCccccchhhhhcccceeeeehhhcc
Confidence 67778888888875 466888999999987776532 356778888899999999999987644
No 375
>PHA03270 envelope glycoprotein C; Provisional
Probab=97.11 E-value=0.0057 Score=48.86 Aligned_cols=83 Identities=13% Similarity=0.242 Sum_probs=62.4
Q ss_pred CCCeEEeccCCCCCCeEEEEEEEcCCCCceEEEEEEEecccCCCeeecCCceeEEecCCcEEEEEEeecCCCC---cEEE
Q psy3045 179 NEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTP---EISW 255 (267)
Q Consensus 179 ~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~---~i~W 255 (267)
..+.|.|..++...+|.|+=..-+..+.......+.|.- +.+|.+.+.+. .+.+|+...-.|.+..+.++ .+.|
T Consensus 180 p~~~L~I~slt~aTeGvY~Wr~~~~~~~~~~~~~VtV~~-yr~Psvsv~~~--PvL~Ge~Y~AtC~va~YYPp~Sv~lrW 256 (466)
T PHA03270 180 PTQRLVIQELTLATQGMYYWARGPADRPHRYGTWTRVRM-FRRPSLSIRPH--AVLEGEPFGATCVAANYYPGDRAAFRW 256 (466)
T ss_pred CcceEEEEEcccccceEEEEEEecCCCceeeeeEEEEEE-ecCCcccccCC--ccccCCCceEEEEeeeecCCCceEEEE
Confidence 356799999999999999988766554433333344432 46787777654 46789999999999876555 7999
Q ss_pred EECCEEcCC
Q psy3045 256 YLDGKKLVN 264 (267)
Q Consensus 256 ~~~~~~l~~ 264 (267)
|+||.++..
T Consensus 257 f~ng~~V~~ 265 (466)
T PHA03270 257 FEGGDEVFA 265 (466)
T ss_pred EeCCccccC
Confidence 999998864
No 376
>cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased
Probab=97.06 E-value=0.0047 Score=40.37 Aligned_cols=56 Identities=20% Similarity=0.370 Sum_probs=39.6
Q ss_pred EEecCCCEEEEeEeCCCC--C-ceEEEEECCccC-C-------------------------CCCCCeEEeccCCCCCCeE
Q psy3045 145 TIDFGRPAQFTCKYEGNP--V-KTISWMKDGKPV-P-------------------------DHNEPVFRIDSVRKEDKGM 195 (267)
Q Consensus 145 ~~~~g~~v~l~C~~~~~p--~-~~~~W~~~~~~~-~-------------------------~~~~~~l~i~~~~~~d~g~ 195 (267)
.+..|+.++|.|..++.. . -.+.|+|+.... . +.+...|.+.+++.+|.+.
T Consensus 9 lv~p~~sv~LsC~~sg~~~s~e~~~~wvRq~pg~lE~c~~~~~~g~~~~~~~~r~tcs~~~s~ntv~L~l~~L~a~DTa~ 88 (115)
T cd05721 9 LASSNGAASLVCEYTYNGFSKEFRASLLKGADSAVEVCAVTGNMSNQLQTSLDGFNCDGTLGNEQVNFTLQNLRANQTDI 88 (115)
T ss_pred EEcCCCCEEEEEEecCCccccEEEEEEEEeCCCCcEEEEEEeCCCccccccCCCeEEeEeCCCCEEEEEEcCCCHHHCeE
Confidence 677788899999887653 2 478888743221 0 0123568889999999999
Q ss_pred EEEEE
Q psy3045 196 YQCVI 200 (267)
Q Consensus 196 y~C~~ 200 (267)
|.|..
T Consensus 89 Y~Ca~ 93 (115)
T cd05721 89 YFCKI 93 (115)
T ss_pred EEEEe
Confidence 99985
No 377
>PHA03271 envelope glycoprotein C; Provisional
Probab=96.94 E-value=0.0062 Score=48.40 Aligned_cols=83 Identities=19% Similarity=0.272 Sum_probs=59.0
Q ss_pred CCeEEeccCCCCCCeEEEEEEEcCCCCceEEEEEEEecccCCCeeecCCceeEEecCCcEEEEEEeecCCCC---cEEEE
Q psy3045 180 EPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTP---EISWY 256 (267)
Q Consensus 180 ~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~---~i~W~ 256 (267)
...+.|.++.-.++|.|.-...+.....-....+.+...+.||.+.+.+. .+.+|++..-.|.+..+.+| .+.||
T Consensus 206 ~m~v~I~svD~~t~Gy~~v~~~d~~N~~i~e~~~~~~v~~RPPsVsV~a~--PVL~Ge~YkAtC~vAnYYPP~SvrlrWf 283 (490)
T PHA03271 206 TMGVEIRNVDYADNGYIQVIMRDPFNRPLLDKHIYIRVCQRPASVDVLAP--PVLSGENYKASCIVRHFYPPGSVYVSWR 283 (490)
T ss_pred eeeEEEEEeecccceEEEEEecCCCCCccccceEEEEEEecCCCccccCC--ccccCCCceEEEEeeeecCCCceEEEEE
Confidence 46788999999999966555554433333333344444457887777664 46789999999999876555 79999
Q ss_pred ECCEEcCC
Q psy3045 257 LDGKKLVN 264 (267)
Q Consensus 257 ~~~~~l~~ 264 (267)
+||..+..
T Consensus 284 ~nG~~V~~ 291 (490)
T PHA03271 284 QNGNIATP 291 (490)
T ss_pred eCCccccC
Confidence 99988754
No 378
>cd07689 Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106) and intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ VCAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. The interaction of VCAM-1 binding to the beta1 integrin very late antigen (VLA-4) expressed by lymphocytes and monocytes mediates the adhesion of leucocytes to blood vessel walls, and regulates migration across the endothelium. During metastasis, some circulating cancer cells extravasate to a secondary site by a similar process. VCAM-1 may be involved in organ targeted tumor metastasis and may also act as host receptors for viruses and parasites. VCAM-1 contains seven Ig domains.
Probab=96.94 E-value=0.0048 Score=39.06 Aligned_cols=72 Identities=14% Similarity=0.162 Sum_probs=41.3
Q ss_pred CCcccCCCCceeEEecCCCeEEEEEEecc--------eeeeecccCcceeccccCC--c-eEEEEeeEEEEeecccCCCe
Q psy3045 13 APTFSSVSDIIRFKKPGGESFALLCEAQE--------NMWFKFIEGSSRKVAVPLN--D-RVKQVSGTLIIKEAKVEDSG 81 (267)
Q Consensus 13 ~P~~~~~~~~~~~~v~~g~~v~l~C~~~~--------~~W~~~~~~~~~~~~~~~~--~-~~~~~~~~l~i~~~~~~d~G 81 (267)
+|.|...+ .+.+|..+++.|.+.+ +.|+++.... ....+... . ........+++.. +++|.|
T Consensus 3 ~p~i~~~~-----~l~~G~~vtv~C~v~~v~P~~~l~v~LlkG~~~l-~~~~f~~~~~~ks~~~~~~~vtftp-treD~g 75 (99)
T cd07689 3 DPEILLSG-----PLEEGKPVTVKCEVPDVYPFDRLEIELLKGETLL-PSKSFLEDMDKKSLETKSLEVTFTP-TIEDIG 75 (99)
T ss_pred CccCcccC-----cccCCceEEEEEEecCcccCCceEEEEecCccee-cccccccccccCCCCCcceeEEEec-chhhCC
Confidence 45565555 5689999999999996 8998852211 11111100 0 0001112344443 477777
Q ss_pred -eEEEEEEcCC
Q psy3045 82 -KYLCVVNNSV 91 (267)
Q Consensus 82 -~Y~C~~~~~~ 91 (267)
.|.|.|.-..
T Consensus 76 ~~fsC~A~L~l 86 (99)
T cd07689 76 KVLVCRAKLHI 86 (99)
T ss_pred cEEEEEEEEee
Confidence 9999997543
No 379
>PHA02914 Immunoglobulin-like domain protein; Provisional
Probab=96.90 E-value=0.019 Score=45.55 Aligned_cols=82 Identities=16% Similarity=0.119 Sum_probs=53.8
Q ss_pred eeEEecCCCeEEEEEEecc--------eeeeecccCcc--e---------eccccCCceE----------EEEeeEEEEe
Q psy3045 23 IRFKKPGGESFALLCEAQE--------NMWFKFIEGSS--R---------KVAVPLNDRV----------KQVSGTLIIK 73 (267)
Q Consensus 23 ~~~~v~~g~~v~l~C~~~~--------~~W~~~~~~~~--~---------~~~~~~~~~~----------~~~~~~l~i~ 73 (267)
+.+.+..|..|.|.|.+.. ..|...+=... . .....-...+ ...+++|+|+
T Consensus 272 ~~~~~~~g~~v~~~c~~s~~~~e~i~~~~w~~t~~~~~~~~g~~~~~~~v~~~~~~~~~~~i~~~~~~s~dlk~STLTIk 351 (500)
T PHA02914 272 DEVMLEVGKRVDIECFFSMCGNENISNAKWIDTGFEIGPLIGTVKSKDIVEGDFAEDDDFMISAHANYSDDLKNSTLTIK 351 (500)
T ss_pred ceeEeccCcEEEEEEEEeecCCcccccceEEecCCcccceeEEEEecceeecccccCCceEEEEecccccchhhceEEee
Confidence 5788889999999999876 88875310000 0 0000001111 1234689999
Q ss_pred ecccCCCeeEEEEEEcCCCccEEEEEEEEEe
Q psy3045 74 EAKVEDSGKYLCVVNNSVGGESVETVLTVTA 104 (267)
Q Consensus 74 ~~~~~d~G~Y~C~~~~~~~~~~~~~~l~V~~ 104 (267)
++..+..|.|+|.+............|.|..
T Consensus 352 ka~I~N~GCY~~~a~~g~~~~ec~~Cl~V~d 382 (500)
T PHA02914 352 KAHINNAGCYEAQAFMGKFKEECRHCFKVAD 382 (500)
T ss_pred eEEEEcCCceEEEEecCcchhhhhhheEecc
Confidence 9999999999999987765566666666654
No 380
>PHA03273 envelope glycoprotein C; Provisional
Probab=96.89 E-value=0.0092 Score=48.18 Aligned_cols=80 Identities=19% Similarity=0.358 Sum_probs=59.4
Q ss_pred CeEEeccCCCCCCeEEEEEEEcCCCCceEEEEEEEecccCCCeeecCCceeEEecCCcEEEEEEeecCCCC---cEEEEE
Q psy3045 181 PVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTP---EISWYL 257 (267)
Q Consensus 181 ~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~---~i~W~~ 257 (267)
..|+|..++...+|.|+=.+.+..+.......+.|.- +.+|.+.+.+. .+.+|+...-.|.+..+.++ .+.||.
T Consensus 198 ~~LtI~sltaaTeGvYtWr~~~~n~t~~~~~~VtV~~-yr~Psvsv~~~--PvL~Ge~y~A~C~aa~YYPp~Sv~~rWf~ 274 (486)
T PHA03273 198 FPLTIKSVDWRTAGVYVWSLYAKNGTLVNSTSVTVST-YNAPLVDLSVH--PSLKGENYRAVCVVASYFPHSSVKLRWYK 274 (486)
T ss_pred cceEEEecchhhceEEEEEEecCCCceeeeeEEEEEE-ecCCcccccCC--ccccCCCceEEEEeeeecCCCceEEEEEe
Confidence 5599999999999999855445444333344455432 46787777654 47899999999999876554 799999
Q ss_pred CCEEcC
Q psy3045 258 DGKKLV 263 (267)
Q Consensus 258 ~~~~l~ 263 (267)
||.++.
T Consensus 275 dg~~V~ 280 (486)
T PHA03273 275 NAKEVD 280 (486)
T ss_pred CCeecc
Confidence 999887
No 381
>cd07689 Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106) and intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ VCAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. The interaction of VCAM-1 binding to the beta1 integrin very late antigen (VLA-4) expressed by lymphocytes and monocytes mediates the adhesion of leucocytes to blood vessel walls, and regulates migration across the endothelium. During metastasis, some circulating cancer cells extravasate to a secondary site by a similar process. VCAM-1 may be involved in organ targeted tumor metastasis and may also act as host receptors for viruses and parasites. VCAM-1 contains seven Ig domains.
Probab=96.86 E-value=0.01 Score=37.56 Aligned_cols=59 Identities=19% Similarity=0.375 Sum_probs=40.6
Q ss_pred EEecCCCEEEEeEeCCC-CC--ceEEEEECCccCCCC-------------CCCeEEeccCCCCCCe-EEEEEEEcCC
Q psy3045 145 TIDFGRPAQFTCKYEGN-PV--KTISWMKDGKPVPDH-------------NEPVFRIDSVRKEDKG-MYQCVIRNEQ 204 (267)
Q Consensus 145 ~~~~g~~v~l~C~~~~~-p~--~~~~W~~~~~~~~~~-------------~~~~l~i~~~~~~d~g-~y~C~~~~~~ 204 (267)
.+..|..+++.|.+.+. |. ..+.|+++...+... ....+++.. .++|.| .|+|.|.-..
T Consensus 11 ~l~~G~~vtv~C~v~~v~P~~~l~v~LlkG~~~l~~~~f~~~~~~ks~~~~~~~vtftp-treD~g~~fsC~A~L~l 86 (99)
T cd07689 11 PLEEGKPVTVKCEVPDVYPFDRLEIELLKGETLLPSKSFLEDMDKKSLETKSLEVTFTP-TIEDIGKVLVCRAKLHI 86 (99)
T ss_pred cccCCceEEEEEEecCcccCCceEEEEecCcceecccccccccccCCCCCcceeEEEec-chhhCCcEEEEEEEEee
Confidence 44679999999998754 53 589999876544311 224555655 477776 9999997543
No 382
>PHA03269 envelope glycoprotein C; Provisional
Probab=96.78 E-value=0.012 Score=47.79 Aligned_cols=83 Identities=13% Similarity=0.187 Sum_probs=59.4
Q ss_pred CCCeEEeccCCCCCCeEEEEEEEcCC-CCceEEEEEEEecccCCCeeecCCceeEEecCCcEEEEEEeecCCCC---cEE
Q psy3045 179 NEPVFRIDSVRKEDKGMYQCVIRNEQ-ESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTP---EIS 254 (267)
Q Consensus 179 ~~~~l~i~~~~~~d~g~y~C~~~~~~-~~~~~~~~l~v~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~---~i~ 254 (267)
....|.|..++..++|.|.=.+.+.. +.......+.|.. +.+|.+.+.+. .+.+|+...-.|.+..+.++ .+.
T Consensus 287 ~~~pL~I~sltaATeGvY~Wrv~~~~n~t~~~~~~VtV~~-yr~PsVsV~p~--PVL~Ge~YkAtC~vA~YYPp~Svrlr 363 (566)
T PHA03269 287 SDFSLHILSLDASTEGTYIWRVIHTANKNVINEHHITVMS-YKRPNITVIGD--PVLLGNPYAAYCKVNKYYPPHSVIVK 363 (566)
T ss_pred CccceEEeecccccCceEEEEEecCCCCceeeeeEEEEEE-ecCCCccccCC--ccccCCCceEEEEeeeecCCCceEEE
Confidence 34669999999999999986554322 2223344444443 36776666554 57899999999999876554 799
Q ss_pred EEECCEEcCC
Q psy3045 255 WYLDGKKLVN 264 (267)
Q Consensus 255 W~~~~~~l~~ 264 (267)
||+||.++..
T Consensus 364 Wf~ng~~V~~ 373 (566)
T PHA03269 364 WTSNFGNIGK 373 (566)
T ss_pred EEeCCcccCc
Confidence 9999988874
No 383
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=96.61 E-value=0.66 Score=46.66 Aligned_cols=191 Identities=14% Similarity=0.136 Sum_probs=108.1
Q ss_pred eEEecCCCeEEEEEEecc-----eeeeecccCcceeccccCCceEEEEeeEEEEeecccCCCeeEEEEE--EcCCCccEE
Q psy3045 24 RFKKPGGESFALLCEAQE-----NMWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYLCVV--NNSVGGESV 96 (267)
Q Consensus 24 ~~~v~~g~~v~l~C~~~~-----~~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~--~~~~~~~~~ 96 (267)
+..+..|++|.|.-.+.. +.|..++ +.... .....+ .-+-...|.|.-.+ .|..+....
T Consensus 1706 ~~~aavn~~V~fs~~lt~GS~vty~W~~gd-G~s~~---~s~p~~----------tHtf~~~G~y~VtVta~N~vss~~~ 1771 (2740)
T TIGR00864 1706 DNPAAVNALINLSAELAEGSGLQYRWFLEE-GDDLE---TSEPFM----------SHSFPSAGLHLVTMKAFNELGSANA 1771 (2740)
T ss_pred CCcccCCCeEEEEEEecCCCCcEEEEEECC-CCCcc---cCCCce----------EEEccCCceEEEEEEEEccccccce
Confidence 345677899988876665 7777642 11100 001100 01123367786555 577777666
Q ss_pred EEEEEEEeccccccCCceEEEeCCCceEEEEEeecCCCcccccCCceEEEecCCCEEEEeEeCCCCCceEEEEECCccCC
Q psy3045 97 ETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVP 176 (267)
Q Consensus 97 ~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~~~W~~~~~~~~ 176 (267)
...+.|.++..-. ..... | ......+..|..+.+.-.+.......+.|.+++..-.
T Consensus 1772 s~~V~VqepV~GL---~i~~~---------~------------~~~~~~~~ag~~v~F~a~vstGsnVsw~W~f~~g~s~ 1827 (2740)
T TIGR00864 1772 SEEVDVQEPISGL---KIRAA---------D------------AGEQNFFAADSSVCFQGELATGTNVSWCWAIDGGSSK 1827 (2740)
T ss_pred eEEEEEEeccccc---eEecC---------C------------CCcccceecCcEEEEEEEccCCCeeEEEEEeCCCCcc
Confidence 6777776543211 11000 0 0000023346666665554433445788888754321
Q ss_pred CCCCCeEEeccCCCCCCeEEEEE--EEcCCCCceEEEEEEEecccCCCeeecCCceeEEecCCcEEEEEEeecCCCCcEE
Q psy3045 177 DHNEPVFRIDSVRKEDKGMYQCV--IRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEIS 254 (267)
Q Consensus 177 ~~~~~~l~i~~~~~~d~g~y~C~--~~~~~~~~~~~~~l~v~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~ 254 (267)
. .... ..+..+.|.|+-. |.|..+....+..+.|+... -.+........+..|+.+.|.+.+...+...+.
T Consensus 1828 ~--gk~v---~~Tf~~aG~ytV~L~AsN~vs~~~~s~~~~VQe~I--~~L~L~as~~~~~~n~~v~fsa~l~~GS~Vtf~ 1900 (2740)
T TIGR00864 1828 M--GKHA---CMTFPDAGTFAIRLNASNAVSGKSASREFFAEEPI--FGLELKASKKIAAIGEKVEFQILLAAGSAVNFR 1900 (2740)
T ss_pred c--ccee---EEecCCCeEEEEEEEEEcccCcceeeeeEEEEEec--ceEEEecccccccCCCEEEEEEEecCCCceEEE
Confidence 1 1111 1456688999876 57888888888888887522 122223334466789999999988877788999
Q ss_pred EEECC
Q psy3045 255 WYLDG 259 (267)
Q Consensus 255 W~~~~ 259 (267)
|..++
T Consensus 1901 w~fGd 1905 (2740)
T TIGR00864 1901 LQIGG 1905 (2740)
T ss_pred EEeCC
Confidence 98764
No 384
>PHA02982 hypothetical protein; Provisional
Probab=96.55 E-value=0.051 Score=39.21 Aligned_cols=108 Identities=10% Similarity=0.255 Sum_probs=63.0
Q ss_pred EecCCCEEEEeEeCCC-CCceEEEEECCc-cCC---------------------------CCCCCeEEeccCCCCCCeEE
Q psy3045 146 IDFGRPAQFTCKYEGN-PVKTISWMKDGK-PVP---------------------------DHNEPVFRIDSVRKEDKGMY 196 (267)
Q Consensus 146 ~~~g~~v~l~C~~~~~-p~~~~~W~~~~~-~~~---------------------------~~~~~~l~i~~~~~~d~g~y 196 (267)
...++.|.|.|..... ...+..|..+.. .+. ..+.++|++..+..+..|-|
T Consensus 36 a~vd~~V~L~C~~~~~~~i~~~~W~~~~~~~la~~~~~~~~iN~~~y~~~~~kd~y~~sv~g~~STLTIkk~~i~N~GCY 115 (251)
T PHA02982 36 ATVDQEVKLQCLFKDADEISRAMWKGDAGFMLAQEANGGTGINAFNYVPGPYKDKYALSVSGNSSTFTMKKPDPQNLGCF 115 (251)
T ss_pred ccCCCcEEEEecCCCcchhhhheeeCCCCeEEEeeecCcceeccccccCCccceeEEEEEeccceeEEeccCCcccCCce
Confidence 3447788888874332 344667765332 121 12468999999999999999
Q ss_pred EEEEEcCCCCceE-EEEEEEecccCCCeeecCCceeEEecCCcEEEEEEeecCCCCcEEEEECCEE
Q psy3045 197 QCVIRNEQESAQA-SGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKK 261 (267)
Q Consensus 197 ~C~~~~~~~~~~~-~~~l~v~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~ 261 (267)
+|.+....+..+. ..-+.++. -.+... .......-.+.|-+-..-.+-..|.-+|..
T Consensus 116 tc~~ks~~~k~E~c~kCl~V~~----~~V~~~----W~e~nNeT~V~CyVgS~~~dvp~W~V~GVv 173 (251)
T PHA02982 116 TCEAKDAEGKEETCEKCLEIQK----EDILYV----VEEHNNETIITCFVGSKHGDVPRFIVAGIV 173 (251)
T ss_pred EEEEecCCCchheeheeeeEec----ceEEEE----EEecCCeEEEEEEEEeccCCCccEEEeeEE
Confidence 9999986655444 44455521 111110 011223345789875443333388877753
No 385
>PF08204 V-set_CD47: CD47 immunoglobulin-like domain; InterPro: IPR013270 This family represents the CD47 leukocyte antigen V-set like Ig domain [, ].; PDB: 2VSC_B 2JJS_D 2JJT_C.
Probab=96.37 E-value=0.004 Score=41.65 Aligned_cols=70 Identities=14% Similarity=0.240 Sum_probs=41.5
Q ss_pred EEecCCCEEEEeEeCCC-----CCceEEEEECCccCCC---C-------------------CCCeEEeccCCCCCCeEEE
Q psy3045 145 TIDFGRPAQFTCKYEGN-----PVKTISWMKDGKPVPD---H-------------------NEPVFRIDSVRKEDKGMYQ 197 (267)
Q Consensus 145 ~~~~g~~v~l~C~~~~~-----p~~~~~W~~~~~~~~~---~-------------------~~~~l~i~~~~~~d~g~y~ 197 (267)
....+++|.|.|.+... +...+.|.+++..+-. . ...+|.+...+.- .|.|+
T Consensus 23 ~t~CN~tV~IPC~v~n~~~~ni~~m~VkWk~~~~~If~~dg~~~~~~~~~f~sa~i~~l~kG~aSL~~~~~~a~-~GnYT 101 (130)
T PF08204_consen 23 YTVCNDTVVIPCFVNNLEANNISEMYVKWKFKNKDIFIFDGTNNKSTSDNFPSAKISELLKGNASLKMDKSDAV-EGNYT 101 (130)
T ss_dssp E-TT-SEEEE--BBSS---SSGGGEEEEEEETTEEEEEEETTTTEEEEGGGTT-BEGGGGGTB--EEEEHHHHH--EEEE
T ss_pred EEecCCCEEEEeEeccccccccceEEEEEEECCeEEEEEcCccceecccCccccchhHhhCCCEEEEEcchhcc-ccceE
Confidence 44568999999998752 2457999998876521 1 1133555543322 79999
Q ss_pred EEEEcCCCCceEEEEEEE
Q psy3045 198 CVIRNEQESAQASGELKL 215 (267)
Q Consensus 198 C~~~~~~~~~~~~~~l~v 215 (267)
|++.....+.+....|..
T Consensus 102 CeVt~~~~ege~~i~Lk~ 119 (130)
T PF08204_consen 102 CEVTELSREGETTIELKY 119 (130)
T ss_dssp EEEEETTEEEEEEEEEEE
T ss_pred EEEEecCCCceEEEEEEE
Confidence 999987766666666655
No 386
>PHA03042 CD47-like protein; Provisional
Probab=96.02 E-value=0.05 Score=40.96 Aligned_cols=69 Identities=17% Similarity=0.280 Sum_probs=45.3
Q ss_pred EecCCCEEEEeEeCCC-----CCceEEEEECCccCCCC---CCCeEEeccCCCCCCeEEEEEEEcCCCCceEEEEEEE
Q psy3045 146 IDFGRPAQFTCKYEGN-----PVKTISWMKDGKPVPDH---NEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKL 215 (267)
Q Consensus 146 ~~~g~~v~l~C~~~~~-----p~~~~~W~~~~~~~~~~---~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v 215 (267)
...++++.+.|.++.. ....+.|.+++..+-.. +.++|.+.. ...-.|+|+|+|.+...+......+..
T Consensus 28 T~CN~TV~IpC~v~n~~~~ni~~~~V~Wkf~~~~If~~n~tn~aSL~~~f-~~~l~GNYTCEv~~l~n~gk~~IeLk~ 104 (286)
T PHA03042 28 TTCNKTIVIVCNLNLLIYYNISNIHINWKFNNKVIFKKNNTNTSSLKFNF-SKNLSGNYTCEAINKFNKIKNTIELQY 104 (286)
T ss_pred EecCceEEEEeecCChhhcCccceEEEEEeCCeeEEEecCCcceEEEEec-cccCCCceeEEEeecccCccEEEEEEE
Confidence 3458999999998653 35579999998876322 334555543 334489999999876555544444443
No 387
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=95.99 E-value=2.1 Score=43.42 Aligned_cols=184 Identities=14% Similarity=0.127 Sum_probs=106.7
Q ss_pred EecCCCeEEEEEEecc-----eeeeecccCcceeccccCCceEEEEeeEEEEeecccCCCeeEEEEE--EcCCCccEEEE
Q psy3045 26 KKPGGESFALLCEAQE-----NMWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYLCVV--NNSVGGESVET 98 (267)
Q Consensus 26 ~v~~g~~v~l~C~~~~-----~~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~--~~~~~~~~~~~ 98 (267)
.+..|.++.|.-.+.. +.|..++. ... .. ... ..+-.+.|.|+-.+ .|..+......
T Consensus 1796 ~~~ag~~v~F~a~vstGsnVsw~W~f~~g-~s~-----~g-------k~v---~~Tf~~aG~ytV~L~AsN~vs~~~~s~ 1859 (2740)
T TIGR00864 1796 FFAADSSVCFQGELATGTNVSWCWAIDGG-SSK-----MG-------KHA---CMTFPDAGTFAIRLNASNAVSGKSASR 1859 (2740)
T ss_pred ceecCcEEEEEEEccCCCeeEEEEEeCCC-Ccc-----cc-------cee---EEecCCCeEEEEEEEEEcccCcceeee
Confidence 4556777877777444 55655311 100 01 111 14566789997655 57777777777
Q ss_pred EEEEEeccccccCCceEEEeCCCceEEEEEeecCCCcccccCCceEEEecCCCEEEEeEeCCCCCceEEEEECCcc-CCC
Q psy3045 99 VLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKP-VPD 177 (267)
Q Consensus 99 ~l~V~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~~~W~~~~~~-~~~ 177 (267)
.+.|.++..-.. |. .....+..|+.++|.+.....+...+.|..++.. ...
T Consensus 1860 ~~~VQe~I~~L~--------------L~--------------as~~~~~~n~~v~fsa~l~~GS~Vtf~w~fGdgs~~~~ 1911 (2740)
T TIGR00864 1860 EFFAEEPIFGLE--------------LK--------------ASKKIAAIGEKVEFQILLAAGSAVNFRLQIGGAAPEVL 1911 (2740)
T ss_pred eEEEEEecceEE--------------Ee--------------cccccccCCCEEEEEEEecCCCceEEEEEeCCCCceee
Confidence 777776432111 00 1111566799999999887777788999886533 211
Q ss_pred CCCCeEEeccCCCCCCeEEE--EEEEcCCCCceEEEEEEEecccCCCeeecCCcee-EEecCCcEEEEEEeecCCCCcEE
Q psy3045 178 HNEPVFRIDSVRKEDKGMYQ--CVIRNEQESAQASGELKLGGRFDPPVIKESFSDE-TLNPGPNYYFKCIASGNPTPEIS 254 (267)
Q Consensus 178 ~~~~~l~i~~~~~~d~g~y~--C~~~~~~~~~~~~~~l~v~~~~~~p~~~~~~~~~-~~~~g~~~~l~C~~~~~p~~~i~ 254 (267)
..+..+. + .-...|.|. -.+.|..+..+....+.|... -.-+.+..... .+..|+...|.-.++..-+..+.
T Consensus 1912 t~~~t~~-H--sY~~~G~Y~VtV~A~N~Vs~~~a~~~V~Vle~--V~gL~I~~~c~~~~~~g~~~tF~A~v~~g~~V~f~ 1986 (2740)
T TIGR00864 1912 QPGPRFS-H--SFPRVDDHMVNLRAKNEVSCAQANLHIEVLEA--VRGLQIPDCCAAGIATGEEKNFTANVQRGKPVAFA 1986 (2740)
T ss_pred cCCCeEE-e--ecCCCCcEEEEEEEEeccceeeeeEEEEEEEe--ccceEecCCcccceecCceEEEEEEEecCCceEEE
Confidence 1122211 1 222345565 456788877777776666432 12233322211 25778999999888766667899
Q ss_pred EEEC
Q psy3045 255 WYLD 258 (267)
Q Consensus 255 W~~~ 258 (267)
|+++
T Consensus 1987 W~f~ 1990 (2740)
T TIGR00864 1987 WTFD 1990 (2740)
T ss_pred EEee
Confidence 9866
No 388
>PHA03042 CD47-like protein; Provisional
Probab=95.34 E-value=0.11 Score=39.32 Aligned_cols=67 Identities=13% Similarity=0.147 Sum_probs=40.2
Q ss_pred EecCCCeEEEEEEecc----------eeeeecccCcceeccccCCceEEEEeeEEEEeecccCCCeeEEEEEEcCCCccE
Q psy3045 26 KKPGGESFALLCEAQE----------NMWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYLCVVNNSVGGES 95 (267)
Q Consensus 26 ~v~~g~~v~l~C~~~~----------~~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~ 95 (267)
.-.-++++.+.|.+.. +.|..++..... .+.. ..++|.+.. ...-.|+|+|++.+-.....
T Consensus 27 yT~CN~TV~IpC~v~n~~~~ni~~~~V~Wkf~~~~If~------~n~t--n~aSL~~~f-~~~l~GNYTCEv~~l~n~gk 97 (286)
T PHA03042 27 YTTCNKTIVIVCNLNLLIYYNISNIHINWKFNNKVIFK------KNNT--NTSSLKFNF-SKNLSGNYTCEAINKFNKIK 97 (286)
T ss_pred EEecCceEEEEeecCChhhcCccceEEEEEeCCeeEEE------ecCC--cceEEEEec-cccCCCceeEEEeecccCcc
Confidence 3456899999999988 899886332211 1111 113555543 34458999999986554433
Q ss_pred EEEEEE
Q psy3045 96 VETVLT 101 (267)
Q Consensus 96 ~~~~l~ 101 (267)
....|.
T Consensus 98 ~~IeLk 103 (286)
T PHA03042 98 NTIELQ 103 (286)
T ss_pred EEEEEE
Confidence 444443
No 389
>PHA03282 envelope glycoprotein E; Provisional
Probab=95.12 E-value=1.6 Score=36.02 Aligned_cols=46 Identities=33% Similarity=0.473 Sum_probs=32.7
Q ss_pred cCCceEEEEeeEEEEeecccCCCeeEEEEEEcCCCc--cEEEEEEEEE
Q psy3045 58 PLNDRVKQVSGTLIIKEAKVEDSGKYLCVVNNSVGG--ESVETVLTVT 103 (267)
Q Consensus 58 ~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~--~~~~~~l~V~ 103 (267)
-...|+...|.+|.|.+++.+|+|.|+-.+...... ....+.|.|.
T Consensus 114 ~~~~rvs~~n~tl~l~~a~~~DsG~Y~L~~~~~~~~~~~~~~v~l~V~ 161 (540)
T PHA03282 114 AWPPRVAVVNGTLVLREARETDSGMYVLSVSRAPNSTAARAVVFLVVG 161 (540)
T ss_pred ccCcceeEecceEEEeeccccCCceEEEEecCCCCchhheEEEEEEec
Confidence 346777778899999999999999999987533222 2333445554
No 390
>KOG4597|consensus
Probab=95.09 E-value=0.056 Score=43.96 Aligned_cols=82 Identities=13% Similarity=0.097 Sum_probs=57.8
Q ss_pred eeEEecCCCeEEEEEEecc-----eeeeecc-cCc-ceecccc-CCceEEEEeeEEEEeecccCCCeeEEEEEEcCCCcc
Q psy3045 23 IRFKKPGGESFALLCEAQE-----NMWFKFI-EGS-SRKVAVP-LNDRVKQVSGTLIIKEAKVEDSGKYLCVVNNSVGGE 94 (267)
Q Consensus 23 ~~~~v~~g~~v~l~C~~~~-----~~W~~~~-~~~-~~~~~~~-~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~ 94 (267)
....+..|++..++|.+.| |.|.+.- +.. .....-. ...-.......|.|-+....|+|.|+|.+.+..|..
T Consensus 204 a~w~vg~wetcS~tCg~~G~q~r~V~c~qv~anr~~vv~~~nq~~e~p~vtstcql~ic~ewq~~a~w~tCs~rcg~g~~ 283 (560)
T KOG4597|consen 204 AEWFVGDWETCSSTCGVQGRQYRVVTCEQVFANRENVVMRPNQTVENPVVTSTCQLVICNEWQADAGWYTCSARCGAGFL 283 (560)
T ss_pred chhhcccchhhcccccccCCcCceeeeehhhccccceeecCccccCCcceeeeeeEEEcchhhcCCCceeecccccccee
Confidence 5678999999999999998 9998741 111 1111111 111122344679999999999999999999999987
Q ss_pred EEEEEEEEEe
Q psy3045 95 SVETVLTVTA 104 (267)
Q Consensus 95 ~~~~~l~V~~ 104 (267)
...+.+.+..
T Consensus 284 ~rdv~c~s~~ 293 (560)
T KOG4597|consen 284 RRDVPCSSVK 293 (560)
T ss_pred eccceeeeec
Confidence 7777766653
No 391
>PHA02865 MHC-like TNF binding protein; Provisional
Probab=94.79 E-value=0.13 Score=40.52 Aligned_cols=35 Identities=17% Similarity=0.326 Sum_probs=23.6
Q ss_pred cccccCCCcccCCCCceeEEecCCCeEEEEEEecc-------eeeeec
Q psy3045 7 KPVGFKAPTFSSVSDIIRFKKPGGESFALLCEAQE-------NMWFKF 47 (267)
Q Consensus 7 ~~~~~~~P~~~~~~~~~~~~v~~g~~v~l~C~~~~-------~~W~~~ 47 (267)
.+...+||...... + -..+ .++|.|.+.+ +.|.++
T Consensus 197 ~L~R~vpP~V~Vt~--k---~~~~-~~tL~C~A~GFYP~~I~v~W~kd 238 (338)
T PHA02865 197 NIPKPVTPTVKVTG--E---ELGD-NTTLFCTFDSHYPSSVAAKWYNS 238 (338)
T ss_pred ccCCCCCCceEEec--c---cCCC-CceEEEEEEeEeCCccEEEEEec
Confidence 34456677666543 1 1123 6899999999 899997
No 392
>PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals. These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region
Probab=94.43 E-value=0.079 Score=39.83 Aligned_cols=42 Identities=19% Similarity=0.468 Sum_probs=33.2
Q ss_pred CceEEEEE-CCccCCCC------CCCeEEeccCCCCCCeEEEEEEEcCC
Q psy3045 163 VKTISWMK-DGKPVPDH------NEPVFRIDSVRKEDKGMYQCVIRNEQ 204 (267)
Q Consensus 163 ~~~~~W~~-~~~~~~~~------~~~~l~i~~~~~~d~g~y~C~~~~~~ 204 (267)
.|.+.|.. +|+.+... .++.|.+.+...+++|.|+|..+...
T Consensus 12 DP~y~W~GP~g~~l~gn~~~nIT~TG~L~~~~F~esmSG~YTCtLsYk~ 60 (271)
T PF07354_consen 12 DPTYLWTGPNGKPLSGNSYVNITETGKLMFKNFQESMSGSYTCTLSYKP 60 (271)
T ss_pred CCceEEECCCCcccCCCCeEEEccCceEEeeccccccCCceEEEEEEEe
Confidence 57899986 44555433 45789999999999999999998765
No 393
>KOG0613|consensus
Probab=94.40 E-value=0.43 Score=44.04 Aligned_cols=180 Identities=12% Similarity=0.104 Sum_probs=100.6
Q ss_pred EEEEeecccCCCeeEEEEEEcCCCccEEEEEEEEEeccccccCCceEEEeCCCceEEEEEeecCCCcccc-cCCceEEEe
Q psy3045 69 TLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAG-VEPTVQTID 147 (267)
Q Consensus 69 ~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~-~~~~~~~~~ 147 (267)
+..+.+....+.+.|+|...+..+.....+.-.+.............. .+...+..... .........
T Consensus 279 t~~i~~~~~~~~~s~t~~~~~~~~q~~~~v~~~~~i~~~~~~p~~~~~-----------aaa~~~~~~v~~~~~~~v~a~ 347 (1205)
T KOG0613|consen 279 TKTIQNDGPEPELSWTVADKRQGCQDRFKVTEEAPIGKGKPGPESLQA-----------AAARPPEVPVGLVRNLSVTAR 347 (1205)
T ss_pred cccccccCCccccceeeecccCCcccceeeeEEeeccccccCchhhhh-----------hccCCccccccccccceeccc
Confidence 567777788888999999988877765544433332111100000000 00000001111 111222445
Q ss_pred cCCCEEEEeEeCCCCCce-EEEEECCccCCCC-----------CCCeEEeccCCCCCCeEEEEEEEcCCCCceEEEEEEE
Q psy3045 148 FGRPAQFTCKYEGNPVKT-ISWMKDGKPVPDH-----------NEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKL 215 (267)
Q Consensus 148 ~g~~v~l~C~~~~~p~~~-~~W~~~~~~~~~~-----------~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v 215 (267)
.+..+.+.|...+.+.++ +.|+++......+ ....+.+..+...+.+.|.|.|.|..+.........+
T Consensus 348 d~~~v~m~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ts~~~~~~~~~~~e~~~~~~~a~n~~g~~~~~~~~~v 427 (1205)
T KOG0613|consen 348 DNTLVEMPTALSGTQKPDEAQGYHGEEVSSESLGALPCPVGTVTSHTYTIKDAGPGEGYFTRVPAVNKGGTEQTIAESTV 427 (1205)
T ss_pred cCcceeecccccCCcCCchheeecccccccccccccccccccccCcchhhhhcCcccccccccceeccCCcccccchhhc
Confidence 567799999999887664 9999976544322 2356777888888999999999998876554332223
Q ss_pred ecc---cCCCeeecCCce-eEEecCCcEEEEEEeecCCCC--cEEEEECC
Q psy3045 216 GGR---FDPPVIKESFSD-ETLNPGPNYYFKCIASGNPTP--EISWYLDG 259 (267)
Q Consensus 216 ~~~---~~~p~~~~~~~~-~~~~~g~~~~l~C~~~~~p~~--~i~W~~~~ 259 (267)
... ..++.+.....- ..+..-+.+.+.|...+++.+ .++|++++
T Consensus 428 s~~~~gt~~~~~kk~~~~t~~L~~~~~i~~~~~~~s~~~~~~~~tt~~~~ 477 (1205)
T KOG0613|consen 428 SEEMPGTQPPKFKKDVSTTDLLTVKDEITVRTPDSSTSMPMTTVTTIKDG 477 (1205)
T ss_pred ccccCCCCCccccccccccccccCCcccccccCCCCccccceeEeeccCC
Confidence 211 122333322111 122233778888988877755 56666655
No 394
>KOG4597|consensus
Probab=93.53 E-value=0.13 Score=41.94 Aligned_cols=77 Identities=14% Similarity=0.121 Sum_probs=58.9
Q ss_pred CCceEEEecCCCEEEEeEeCCCCCceEEEEE---CCccCCC-----------CCCCeEEeccCCCCCCeEEEEEEEcCCC
Q psy3045 140 EPTVQTIDFGRPAQFTCKYEGNPVKTISWMK---DGKPVPD-----------HNEPVFRIDSVRKEDKGMYQCVIRNEQE 205 (267)
Q Consensus 140 ~~~~~~~~~g~~v~l~C~~~~~p~~~~~W~~---~~~~~~~-----------~~~~~l~i~~~~~~d~g~y~C~~~~~~~ 205 (267)
.+....+..+++..++|-+.|.+.+.|+|.+ |+..+.. .+...|.|-+....|+|-|+|.+.+..+
T Consensus 202 cpa~w~vg~wetcS~tCg~~G~q~r~V~c~qv~anr~~vv~~~nq~~e~p~vtstcql~ic~ewq~~a~w~tCs~rcg~g 281 (560)
T KOG4597|consen 202 CPAEWFVGDWETCSSTCGVQGRQYRVVTCEQVFANRENVVMRPNQTVENPVVTSTCQLVICNEWQADAGWYTCSARCGAG 281 (560)
T ss_pred CcchhhcccchhhcccccccCCcCceeeeehhhccccceeecCccccCCcceeeeeeEEEcchhhcCCCceeeccccccc
Confidence 3455578889999999999999999999975 4433211 1235688888999999999999999988
Q ss_pred CceEEEEEEEe
Q psy3045 206 SAQASGELKLG 216 (267)
Q Consensus 206 ~~~~~~~l~v~ 216 (267)
...+.+.+.+.
T Consensus 282 ~~~rdv~c~s~ 292 (560)
T KOG4597|consen 282 FLRRDVPCSSV 292 (560)
T ss_pred eeeccceeeee
Confidence 77666666553
No 395
>KOG1480|consensus
Probab=93.32 E-value=0.063 Score=46.43 Aligned_cols=76 Identities=24% Similarity=0.354 Sum_probs=51.8
Q ss_pred eeEEecCCCeEEEEEEecc------eeeeecccCcceeccccCCceEEEEeeEEEEeecccCCCeeEEEEEEcCCCc-cE
Q psy3045 23 IRFKKPGGESFALLCEAQE------NMWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYLCVVNNSVGG-ES 95 (267)
Q Consensus 23 ~~~~v~~g~~v~l~C~~~~------~~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~-~~ 95 (267)
.-..|..+..+.|.|+... +.|+++...... ..+-.......+.+..+...|.|+|+|.+.|-.+. ..
T Consensus 137 ~~q~V~~~s~~~l~cr~pe~~paae~~w~k~e~~~~p-----d~n~~~~~d~~li~~~arlsd~~nytc~a~ni~~~r~~ 211 (909)
T KOG1480|consen 137 VGQEVQEETTLQLPCRPPEGDPKAEVEWLKNEVVIDP-----DANVIRASDHNLIISQARLSDSGNYTCEATNIVAKRKS 211 (909)
T ss_pred hhheecccccccccccCcccchhhhhhccccCCCCCc-----cccchhhhcCCccccchhhhhcccceeeeehhhccccc
Confidence 3457788899999998776 999996432211 12222234457999999999999999999987655 23
Q ss_pred EEEEEEEE
Q psy3045 96 VETVLTVT 103 (267)
Q Consensus 96 ~~~~l~V~ 103 (267)
..+.+.+.
T Consensus 212 ~~~~v~vy 219 (909)
T KOG1480|consen 212 DPATVQVY 219 (909)
T ss_pred cceEEEEE
Confidence 33344443
No 396
>PF02124 Marek_A: Marek's disease glycoprotein A; InterPro: IPR001038 Equid herpesvirus 1 (Equine herpesvirus 1, EHV-1) glycoprotein 13 (EHV-1 gp13) has the characteristic features of a membrane-spanning protein: an N-terminal signal sequence; a hydrophobic membrane anchor region; a charged C-terminal cytoplasmic tail; and an exterior domain with nine potential N-glycosylation sites []. EHV-1 gp13 is the structural homologue of the gC-like glycoproteins of the Human herpesvirus 1 (HHV-1) and Human herpesvirus 2 (HHV-2) (gC-1 and gC-2 respectively), Pseudorabies virus (strain Indiana-Funkhauser/Becker) (PRV) (gIII) and Human herpesvirus 3 (HHV-3) (gp66). Secretory glycoprotein GP57-65 precursor (glycoprotein A - GA) is similar to Herpesvirus glycoprotein C, and belongs to the immunoglobulin gene superfamily [, ]. GA is thought to play an immunoevasive role in the pathogenesis of Marek's disease. It is a candidate for causing the early-stage immunosuppression that occurs after MDHV infection.
Probab=92.91 E-value=1.5 Score=32.27 Aligned_cols=89 Identities=16% Similarity=0.364 Sum_probs=48.2
Q ss_pred eEEEEECCccCCCC---------------CCCeEEe-ccCCCCCCeEEEEEEEcCCCCce-EEEEEEEec-ccCCCeeec
Q psy3045 165 TISWMKDGKPVPDH---------------NEPVFRI-DSVRKEDKGMYQCVIRNEQESAQ-ASGELKLGG-RFDPPVIKE 226 (267)
Q Consensus 165 ~~~W~~~~~~~~~~---------------~~~~l~i-~~~~~~d~g~y~C~~~~~~~~~~-~~~~l~v~~-~~~~p~~~~ 226 (267)
.+.|+.||.++... ..++|++ ........-..+|.+...-.... +++...+.. .+.+|.+.+
T Consensus 8 ~~~Wf~dg~~v~~~~~~~~~~~~~~G~~s~vStl~~~~~~~~~~pp~i~C~v~W~r~~v~~~r~~a~~~P~Vy~~P~vsv 87 (211)
T PF02124_consen 8 RFRWFEDGNPVEPRFIRDSSQVWSDGLFSRVSTLTLPGNSADSPPPSIRCQVTWYRDSVSETRFNATATPSVYPKPRVSV 87 (211)
T ss_pred EEEEEECCEeCCccceeeEEEEecCCcEEEEEEEEecCCCCCCCCCcceEEEEEccCCCeeeEeecccccceecCCEEEE
Confidence 67788777766422 1134555 22334445689999987544332 222222211 123444443
Q ss_pred CCceeEEecCCcEEEEEEeecCCC--CcEEEEECCEE
Q psy3045 227 SFSDETLNPGPNYYFKCIASGNPT--PEISWYLDGKK 261 (267)
Q Consensus 227 ~~~~~~~~~g~~~~l~C~~~~~p~--~~i~W~~~~~~ 261 (267)
.+..| ...|.+...|. ..+.|+-++..
T Consensus 88 -----~F~~g---~AVC~A~CVP~~~v~l~W~v~d~~ 116 (211)
T PF02124_consen 88 -----RFEDG---YAVCTARCVPRGNVTLRWSVGDDP 116 (211)
T ss_pred -----EecCC---EEEEEcceeeCCCeEEEEEECCcc
Confidence 23223 34599988774 48999987754
No 397
>PHA03283 envelope glycoprotein E; Provisional
Probab=92.65 E-value=5.5 Score=33.53 Aligned_cols=37 Identities=22% Similarity=0.128 Sum_probs=28.6
Q ss_pred eEEEEeecccCCCeeEEEEEEcCCCccEEEEEEEEEe
Q psy3045 68 GTLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTVTA 104 (267)
Q Consensus 68 ~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~V~~ 104 (267)
+.|.|.+++.+++|.|+-...+..+.....+.|.|..
T Consensus 134 ~~l~I~~at~~~aGVYtly~r~d~~~~~~vflvtVk~ 170 (542)
T PHA03283 134 SVLQIQRATPNIAGVYTLHVSSDGMMKHSVFFVTVKK 170 (542)
T ss_pred CeeEEEecccccCeEEEEEecCCCceEEEEEEEEecC
Confidence 4799999999999999999987666444455566654
No 398
>PHA02865 MHC-like TNF binding protein; Provisional
Probab=91.99 E-value=0.54 Score=37.18 Aligned_cols=21 Identities=14% Similarity=0.645 Sum_probs=17.7
Q ss_pred CEEEEeEeCCC-C-CceEEEEEC
Q psy3045 151 PAQFTCKYEGN-P-VKTISWMKD 171 (267)
Q Consensus 151 ~v~l~C~~~~~-p-~~~~~W~~~ 171 (267)
.++|+|.+.|+ | ...+.|.++
T Consensus 216 ~~tL~C~A~GFYP~~I~v~W~kd 238 (338)
T PHA02865 216 NTTLFCTFDSHYPSSVAAKWYNS 238 (338)
T ss_pred CceEEEEEEeEeCCccEEEEEec
Confidence 57999999997 4 458899999
No 399
>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein. gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.
Probab=91.08 E-value=0.49 Score=39.35 Aligned_cols=43 Identities=33% Similarity=0.359 Sum_probs=0.0
Q ss_pred eEEEEeeEEEEeecccCCCeeEEEEEEcCCCc-cEEEEEEEEEe
Q psy3045 62 RVKQVSGTLIIKEAKVEDSGKYLCVVNNSVGG-ESVETVLTVTA 104 (267)
Q Consensus 62 ~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~-~~~~~~l~V~~ 104 (267)
++..+.+.|.|.+++.+|+|.|+-...+..+. ....+.|.|..
T Consensus 83 ~~~~~~~~l~i~~a~~~~~GvY~l~~~~~~~~~~~~~~~v~v~~ 126 (439)
T PF02480_consen 83 RLTFNKGGLSILNATEQDSGVYTLYVRNDSGWAHQSVVFVTVKG 126 (439)
T ss_dssp --------------------------------------------
T ss_pred ceeecCCceEEeccccccCeeEEEEecCCCCceEEEEEEEEEcC
Confidence 33445578999999999999999999876655 34445566654
No 400
>PF05790 C2-set: Immunoglobulin C2-set domain; InterPro: IPR008424 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C2-set domains, which are Ig-like domains resembling the antibody constant domain. C2-set domains are found primarily in the mammalian T-cell surface antigens CD2 (Cluster of Differentiation 2), CD4 and CD80, as well as in vascular (VCAM) and intercellular (ICAM) cell adhesion molecules. CD2 mediates T-cell adhesion via its ectodomain, and signal transduction utilising its 117-amino acid cytoplasmic tail []. CD2 displays structural and functional similarities with African swine fever virus (ASFV) LMW8-DR, a protein that is involved in cell-cell adhesion and immune response modulation, suggesting a possible role in the pathogenesis of ASFV infection []. CD4 is the primary receptor for HIV-1. CD4 has four immunoglobulin-like domains in its extracellular region that share the same structure, but can differ in sequence. Certain extracellular domains may be involved in dimerisation [].; GO: 0007155 cell adhesion, 0016021 integral to membrane; PDB: 1CID_A 1CDU_A 1WIQ_B 2NY4_B 2NY2_B 1WIP_B 1WIO_A 3S4S_G 1CDY_A 3S5L_G ....
Probab=90.75 E-value=1.4 Score=27.02 Aligned_cols=38 Identities=16% Similarity=0.245 Sum_probs=25.7
Q ss_pred CceEEEEECCccCCCCCCCeEEeccCCCCCCeEEEEEEE
Q psy3045 163 VKTISWMKDGKPVPDHNEPVFRIDSVRKEDKGMYQCVIR 201 (267)
Q Consensus 163 ~~~~~W~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~ 201 (267)
.+.+.|.-.+.... .............+|+|.+.|.|.
T Consensus 26 ~~~~~l~~~~~k~~-~~~~~~~~~~~~~~d~G~w~C~a~ 63 (80)
T PF05790_consen 26 KPSLFLENPGKKSL-ETKKLVSTFTPTTEDSGTWVCTAS 63 (80)
T ss_dssp CEEEEEECSSCEEE-EESSEEEEESBTCGGSEEEEEEEE
T ss_pred ChhheeeccCcccc-ccceEEEEecCCCCCCEEEEEEEc
Confidence 44666765554431 234556667788899999999994
No 401
>PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals. These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region
Probab=90.71 E-value=0.51 Score=35.69 Aligned_cols=45 Identities=22% Similarity=0.348 Sum_probs=31.9
Q ss_pred eeeeecccCcceeccccCCceEEE-EeeEEEEeecccCCCeeEEEEEEcCC
Q psy3045 42 NMWFKFIEGSSRKVAVPLNDRVKQ-VSGTLIIKEAKVEDSGKYLCVVNNSV 91 (267)
Q Consensus 42 ~~W~~~~~~~~~~~~~~~~~~~~~-~~~~l~i~~~~~~d~G~Y~C~~~~~~ 91 (267)
+.|...+. . .+....++.. ..+.|.+.+...+++|.|+|.+.+..
T Consensus 15 y~W~GP~g-~----~l~gn~~~nIT~TG~L~~~~F~esmSG~YTCtLsYk~ 60 (271)
T PF07354_consen 15 YLWTGPNG-K----PLSGNSYVNITETGKLMFKNFQESMSGSYTCTLSYKP 60 (271)
T ss_pred eEEECCCC-c----ccCCCCeEEEccCceEEeeccccccCCceEEEEEEEe
Confidence 78986422 1 2233444444 35689999999999999999998765
No 402
>PHA03052 Hypothetical protein; Provisional
Probab=90.64 E-value=0.92 Score=26.36 Aligned_cols=32 Identities=19% Similarity=0.362 Sum_probs=25.3
Q ss_pred EEEecCCCEEEEeEeCCC---CCceEEEEECCccC
Q psy3045 144 QTIDFGRPAQFTCKYEGN---PVKTISWMKDGKPV 175 (267)
Q Consensus 144 ~~~~~g~~v~l~C~~~~~---p~~~~~W~~~~~~~ 175 (267)
..+..|..++|.|.+.-. ..+.+.|.-|+..+
T Consensus 7 i~~slGs~ltI~Ckv~lg~g~~~a~V~W~~N~~~~ 41 (69)
T PHA03052 7 IVTSLGSNLTITCKVSLRPPTTDADVFWISNGMYY 41 (69)
T ss_pred EEEEccCCceEeEEEEecCCCcceEEEEEeCCcEE
Confidence 367789999999998632 35688899998877
No 403
>PHA03052 Hypothetical protein; Provisional
Probab=90.60 E-value=1.1 Score=26.07 Aligned_cols=35 Identities=17% Similarity=0.315 Sum_probs=27.0
Q ss_pred ceeEEecCCcEEEEEEee-cC--CCCcEEEEECCEEcC
Q psy3045 229 SDETLNPGPNYYFKCIAS-GN--PTPEISWYLDGKKLV 263 (267)
Q Consensus 229 ~~~~~~~g~~~~l~C~~~-~~--p~~~i~W~~~~~~l~ 263 (267)
....+..|..++|.|.+. |. ..+.+.|.-||.-+.
T Consensus 5 ~~i~~slGs~ltI~Ckv~lg~g~~~a~V~W~~N~~~~e 42 (69)
T PHA03052 5 EGIVTSLGSNLTITCKVSLRPPTTDADVFWISNGMYYE 42 (69)
T ss_pred ccEEEEccCCceEeEEEEecCCCcceEEEEEeCCcEEe
Confidence 445678899999999996 33 335799999998874
No 404
>cd05890 Ig2_Nectin-1_like Second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins. Ig2_Nectin-1_like: domain similar to the second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectins also heterophilically trans-interact with other CAMs such as nectin-like molecules (necls); nectin-1 for example, has been shown to trans-interact with necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is associ
Probab=89.88 E-value=3.1 Score=26.24 Aligned_cols=68 Identities=12% Similarity=0.171 Sum_probs=41.5
Q ss_pred eEEEEEEecc------eeeeecccCcceeccccCCceEEEEeeEEEEeecccCCCeeEEEEEEcCCCccEEEEE
Q psy3045 32 SFALLCEAQE------NMWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYLCVVNNSVGGESVETV 99 (267)
Q Consensus 32 ~v~l~C~~~~------~~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~ 99 (267)
.+.-.|...+ +.|.-+.+|.................+.+.+-.....|.-..+|.+.+....-...+.
T Consensus 22 v~VA~CiSa~GrPpa~ItW~t~l~G~~etq~~~~~~GT~TV~S~y~lVPs~~~~gk~lTCvV~h~~~~~~~~~~ 95 (98)
T cd05890 22 MLVATCVSANGKPPSVVRWDTRLKGEAEFQEIRNQNGTVTVISRYRLVPSREAHKQKLTCIVNYRNDRFTDSVT 95 (98)
T ss_pred EEEEEEEcCCCcCCcEeEEEccCCCceeeeeeCCCCCCEEEEEEEEEeECHHHcCCEeEEEEEeccccccccEE
Confidence 3456898655 9998765555433333333334444456666667777788999999886443333333
No 405
>PF11465 Receptor_2B4: Natural killer cell receptor 2B4; InterPro: IPR024303 2B4 is a transmembrane receptor which is expressed primarily on natural killer (NK) cells. It plays a role in activating NK-mediated cytotoxicity through its interaction with CD48 on target cells in a subset of CD8 T cells []. The structure of 2B4 consists of an immunoglobulin variable domain fold and contains two beta-sheets. One of the beta-sheets, the six-stranded sheet, contains structural features that may have a role in ligand recognition and receptor function []. This entry represents the 2B4 immunoglobulin domain.; GO: 0005488 binding; PDB: 2PTU_D 2PTT_B 1Z2K_A.
Probab=88.99 E-value=1.7 Score=28.04 Aligned_cols=29 Identities=21% Similarity=0.390 Sum_probs=24.1
Q ss_pred CCCeEEeccCCCCCCeEEEEEEEcCCCCc
Q psy3045 179 NEPVFRIDSVRKEDKGMYQCVIRNEQESA 207 (267)
Q Consensus 179 ~~~~l~i~~~~~~d~g~y~C~~~~~~~~~ 207 (267)
.+.+|.|..++..|+|.|.-++++..|..
T Consensus 69 enlaLlIkaAq~qDSG~Y~LEvT~~sG~V 97 (108)
T PF11465_consen 69 ENLALLIKAAQPQDSGLYCLEVTNESGKV 97 (108)
T ss_dssp TTTEEEESS-SGGG-EEEEEEEEETTSCE
T ss_pred cCceEEEeecCcccCceEEEEEEcCCCcE
Confidence 45789999999999999999999988775
No 406
>PF06328 Lep_receptor_Ig: Ig-like C2-type domain; InterPro: IPR010457 This entry represents a ligand-binding domain that displays similarity to C2-set immunoglobulin domains (antibody constant domain 2) []. The two cysteine residues form a disulphide bridge.; PDB: 3L5H_A 1P9M_A 1I1R_A 2D9Q_B.
Probab=88.11 E-value=3 Score=26.12 Aligned_cols=58 Identities=14% Similarity=0.416 Sum_probs=36.1
Q ss_pred EEecCCCEEEEeEeCCC-----CCceEEEEECCccCCCCC-------CCeEEeccCCCCCCeEEEEEEEc
Q psy3045 145 TIDFGRPAQFTCKYEGN-----PVKTISWMKDGKPVPDHN-------EPVFRIDSVRKEDKGMYQCVIRN 202 (267)
Q Consensus 145 ~~~~g~~v~l~C~~~~~-----p~~~~~W~~~~~~~~~~~-------~~~l~i~~~~~~d~g~y~C~~~~ 202 (267)
.+..|+.+++.|..... ....+.|..|+..++... .+.+++.+......-.|-|....
T Consensus 14 vv~lGS~vtasC~l~~~c~~~~~a~~I~Wkln~~~iP~~qy~~in~~~SsVT~~~~~~~~~~L~cC~l~~ 83 (89)
T PF06328_consen 14 VVSLGSNVTASCVLKQNCSHSVNASQIVWKLNGEKIPGSQYRVINDTVSSVTLPNLNPTGATLFCCKLAW 83 (89)
T ss_dssp EEETTS-EEEEEEE-CCCHCT-STTCEEEECSSCESTCGCEEEESTTEEEEEESS--SSEEEEEEEEECT
T ss_pred EEeCCCCEEEEEEEECCCCCCcccceEEEEECCEECChhHcceeCCeEEEEEEccCCCCCceEEEEEEcc
Confidence 67789999999987532 355899999998776532 24555655554444566666443
No 407
>PF06832 BiPBP_C: Penicillin-Binding Protein C-terminus Family; InterPro: IPR009647 This conserved region of approximately 90 residues is found in a sub-group of bacterial Penicillin-Binding Proteins (PBPs). A variable length loop region separates this region from the transpeptidase unit (IPR001460 from INTERPRO). It is predicted to be a beta fold.
Probab=87.99 E-value=4.7 Score=25.13 Aligned_cols=54 Identities=15% Similarity=0.265 Sum_probs=35.8
Q ss_pred CEEEEeEeCCCCCceEEEEECCccCCC-CCCCeEEeccCCCCCCeEEEEEEEcCCCCce
Q psy3045 151 PAQFTCKYEGNPVKTISWMKDGKPVPD-HNEPVFRIDSVRKEDKGMYQCVIRNEQESAQ 208 (267)
Q Consensus 151 ~v~l~C~~~~~p~~~~~W~~~~~~~~~-~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~ 208 (267)
...|.+.+.+. ...+.|+.||..+.. .....+.+. ....|.|+-.+....|...
T Consensus 31 ~~~l~l~a~~~-~~~~~W~vdg~~~g~~~~~~~~~~~---~~~~G~h~l~vvD~~G~~~ 85 (89)
T PF06832_consen 31 RQPLVLKAAGG-RGPVYWFVDGEPLGTTQPGHQLFWQ---PDRPGEHTLTVVDAQGRSA 85 (89)
T ss_pred cceEEEEEeCC-CCcEEEEECCEEcccCCCCCeEEeC---CCCCeeEEEEEEcCCCCEE
Confidence 45555565555 348999999999833 233444333 3567999999988777644
No 408
>PHA03189 UL14 tegument protein; Provisional
Probab=87.66 E-value=4.9 Score=31.24 Aligned_cols=19 Identities=16% Similarity=0.321 Sum_probs=16.7
Q ss_pred eeEEecCCCeEEEEEEecc
Q psy3045 23 IRFKKPGGESFALLCEAQE 41 (267)
Q Consensus 23 ~~~~v~~g~~v~l~C~~~~ 41 (267)
....+..|+.+++.|.+..
T Consensus 60 AP~l~pyGdrvtVpC~fp~ 78 (348)
T PHA03189 60 APLLVPYGDRVTVPCTFPT 78 (348)
T ss_pred CccccCCCceeeeeeeecC
Confidence 4567889999999999988
No 409
>PF06328 Lep_receptor_Ig: Ig-like C2-type domain; InterPro: IPR010457 This entry represents a ligand-binding domain that displays similarity to C2-set immunoglobulin domains (antibody constant domain 2) []. The two cysteine residues form a disulphide bridge.; PDB: 3L5H_A 1P9M_A 1I1R_A 2D9Q_B.
Probab=86.38 E-value=3.3 Score=25.97 Aligned_cols=62 Identities=8% Similarity=0.096 Sum_probs=33.9
Q ss_pred eeEEecCCCeEEEEEEecc----------eeeeecccCcceeccccCCceEEEEeeEEEEeecccCCCeeEEEEEE
Q psy3045 23 IRFKKPGGESFALLCEAQE----------NMWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYLCVVN 88 (267)
Q Consensus 23 ~~~~v~~g~~v~l~C~~~~----------~~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~ 88 (267)
++..+..|++++..|.+.. +.|..+.......+. ..+....+++++.+.....+-.|-|...
T Consensus 11 ~~pvv~lGS~vtasC~l~~~c~~~~~a~~I~Wkln~~~iP~~qy----~~in~~~SsVT~~~~~~~~~~L~cC~l~ 82 (89)
T PF06328_consen 11 PSPVVSLGSNVTASCVLKQNCSHSVNASQIVWKLNGEKIPGSQY----RVINDTVSSVTLPNLNPTGATLFCCKLA 82 (89)
T ss_dssp SSSEEETTS-EEEEEEE-CCCHCT-STTCEEEECSSCESTCGCE----EEESTTEEEEEESS--SSEEEEEEEEEC
T ss_pred CCCEEeCCCCEEEEEEEECCCCCCcccceEEEEECCEECChhHc----ceeCCeEEEEEEccCCCCCceEEEEEEc
Confidence 4557889999999999876 778764221111111 1111122567777776666667777753
No 410
>PHA03286 envelope glycoprotein E; Provisional
Probab=84.79 E-value=22 Score=29.62 Aligned_cols=36 Identities=22% Similarity=0.222 Sum_probs=28.6
Q ss_pred eEEEEeecccCCCeeEEEEEEcCCCcc-EEEEEEEEE
Q psy3045 68 GTLIIKEAKVEDSGKYLCVVNNSVGGE-SVETVLTVT 103 (267)
Q Consensus 68 ~~l~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~~l~V~ 103 (267)
..|.|.+.+.+++|.|+-...++.+.. ...+.+.|.
T Consensus 127 ~~L~I~nAt~qnaGiYtly~rnd~~~~~~~vflVtV~ 163 (492)
T PHA03286 127 KELTILNASSQNAGIYIRYSRNGTRTAVMDVLVVWVS 163 (492)
T ss_pred CceEEeeccccccceEEEEEcCCCCcEEEEEEEEEEe
Confidence 579999999999999999998877664 445556664
No 411
>PF03921 ICAM_N: Intercellular adhesion molecule (ICAM), N-terminal domain; InterPro: IPR013768 Intercellular adhesion molecules (ICAMs) and vascular cell adhesion molecule-1 (VCAM-1) are part of the immunoglobulin superfamily. They are important in inflammation, immune responses and in intracellular signalling events []. The ICAM family consists of five members, designated ICAM-1 to ICAM-5. They are known to bind to leucocyte integrins CD11/CD18 during inflammation and in immune responses. In addition, ICAMs may exist in soluble forms in human plasma, due to activation and proteolysis mechanisms at cell surfaces. ICAM-1 (CD54) contains five Ig-like domains. It is expressed on leucocytes, endothelial and epithelial cells, and is upregulated in response to bacterial invasion. The protein is a ligand for lymphocyte-function associated (LFA) antigens and also a receptor for CD11a,b/CD18, fibrinogen, human rhinovirus and Plasmodium falciparum-infected erythrocytes. ICAM-1 binding sites for CD11a/CD18 and its other binding partners are located in the first domain and are overlapping. ICAM-1 domain 2 seems to play an important role in maintaining the conformation of domain 1 and particularly the structural integrity of the LFA-1 ligand-binding site []. The 3-dimensional atomic structure of the tandem N-terminal Ig-like domains (D1 and D2) of ICAM-1 has been determined to 2.2A resolution and fitted into a cryoelectron microscopy reconstruction of a rhinovirus-ICAM-1 complex []. Extensive charge interactions between ICAM-1 and human rhinovirusesare largely conserved in major and minor receptor groups of rhinoviruses. The interaction of ICAMs with LFA-1 is mediated by a divalent cation bound to the insertion (I)-domain on the alpha chain of LFA-1 and the carboxyl group of a conserved glutamic acid residue on ICAMs. ICAM-2 (CD102) has two Ig-like domains. It is expressed on endothelial cells, leucocytes and platelets, and binds to CD11a'b/CD18. The protein is refractory to proinflammatory cytokines, and plays an important role in the adhesion of leucocytes to the uninduced endothelium []. ICAM-3 (CD50) contains five Ig-like domains and binds to leucocyte integrins CD11a'd/CD18. The protein plays an important role in the immune response and perhaps in signal transduction []. ICAM-4 (LW blood group Ag) is red blood cell (RBC) specific and binds to CD11a'b/CD18. It is associated with the RBC Rh antigens and could be important in retaining immature red cells in the bone marrow, or in the uptake of senescent cells into the spleen []. ICAM-5 (telencephalin) has nine Ig-like domains and is confined to the telencephalon of the brain. The role of this CD11a/CD18 binding molecule is not yet known []. VCAM-1 was first described as a cytokine-inducible endothelial adhesion molecule. It can bind to leucocyte integrin VL-4 (very late antigen-4) to recruit leucocytes to sites of inflammation []. The predominant form of VCAM-1 in vivo has an N-terminal extracellular region comprising seven Ig-like domains []. A conserved integrin-binding motif has been identified in domains 1 and 4, variants of which are present in the N-terminal domain of all members of the integrin-binding subgroup of the immunoglobulin superfamily. The structure of a VLA-4-binding fragment comprising the first two domains of VCAM-1 has been determined to 1.8A resolution. The integrin-binding motif is exposed and forms the N-terminal region of the loop between beta-strands C and D of domain 1 []. VCAM-1 domains 1 and 2 are structurally similar to ICAM-1 and ICAM-2 []. This entry represents the N-terminal domain of ICAM proteins such as ICAM-2, ICAM-3 and ICAM-4.; PDB: 3BN3_B 1T0P_B 1ZXQ_A 3TCX_A 1MQ8_A 1Z7Z_I 1IC1_A 1IAM_A.
Probab=84.22 E-value=8.1 Score=24.31 Aligned_cols=76 Identities=18% Similarity=0.116 Sum_probs=45.5
Q ss_pred ccCCCCceeEEecCCCeEEEEEEecc-----eeeeecccCcceeccccCCceEEE---EeeEEEEeecccCCCeeEEEEE
Q psy3045 16 FSSVSDIIRFKKPGGESFALLCEAQE-----NMWFKFIEGSSRKVAVPLNDRVKQ---VSGTLIIKEAKVEDSGKYLCVV 87 (267)
Q Consensus 16 ~~~~~~~~~~~v~~g~~v~l~C~~~~-----~~W~~~~~~~~~~~~~~~~~~~~~---~~~~l~i~~~~~~d~G~Y~C~~ 87 (267)
+.+.| +...|..|+++.+.|...= +-|.- .+...... .-..+.+.+++. | ..-.|.+
T Consensus 6 v~v~P--~~~vV~~G~Sv~VNCStsC~~p~~~GLET-----------~L~k~~~~~g~~W~~f~LsnV~~-d-s~~~C~~ 70 (91)
T PF03921_consen 6 VRVSP--EEPVVPPGGSVWVNCSTSCPQPEKIGLET-----------SLSKTELDSGPQWKAFQLSNVTE-D-SSPLCFF 70 (91)
T ss_dssp EEEES--SEEEEETTEEEEEEEEESSSS-SEEEEES-----------SSEEEEEEEETTEEEEEEEEE-S-C-EEEEEEE
T ss_pred EEEEC--CccEECCCCCEEEEEcCCCCCCCcceEEE-----------ecCCcccCCCCcEEEEEEEcccc-C-CeEEEEE
Confidence 33444 7889999999999999753 22211 11111111 123677888886 4 4678999
Q ss_pred EcCCCccEEEEEEEEEecc
Q psy3045 88 NNSVGGESVETVLTVTAPL 106 (267)
Q Consensus 88 ~~~~~~~~~~~~l~V~~~~ 106 (267)
.-..........|+|+.+|
T Consensus 71 ~C~g~Q~~~~~~ItVY~~P 89 (91)
T PF03921_consen 71 NCSGEQSSASANITVYKPP 89 (91)
T ss_dssp EETTEEEEEEEEEEEEB--
T ss_pred EcCCeEEEeEEeeEEeCCC
Confidence 8654345677777777654
No 412
>PF06832 BiPBP_C: Penicillin-Binding Protein C-terminus Family; InterPro: IPR009647 This conserved region of approximately 90 residues is found in a sub-group of bacterial Penicillin-Binding Proteins (PBPs). A variable length loop region separates this region from the transpeptidase unit (IPR001460 from INTERPRO). It is predicted to be a beta fold.
Probab=83.20 E-value=7.9 Score=24.11 Aligned_cols=24 Identities=25% Similarity=0.537 Sum_probs=18.3
Q ss_pred cEEEEEEeecCCCCcEEEEECCEEc
Q psy3045 238 NYYFKCIASGNPTPEISWYLDGKKL 262 (267)
Q Consensus 238 ~~~l~C~~~~~p~~~i~W~~~~~~l 262 (267)
...|...+.+. ...+.||.||+.+
T Consensus 31 ~~~l~l~a~~~-~~~~~W~vdg~~~ 54 (89)
T PF06832_consen 31 RQPLVLKAAGG-RGPVYWFVDGEPL 54 (89)
T ss_pred cceEEEEEeCC-CCcEEEEECCEEc
Confidence 45566666655 4599999999998
No 413
>PRK14081 triple tyrosine motif-containing protein; Provisional
Probab=81.40 E-value=39 Score=30.08 Aligned_cols=113 Identities=20% Similarity=0.172 Sum_probs=66.9
Q ss_pred EEecCCCEEEEeEeCCCCCceEE-E-EECCccCCCC---CCCeEEeccCCCCCCeEEEEEEEc--CCCC----ceEEEEE
Q psy3045 145 TIDFGRPAQFTCKYEGNPVKTIS-W-MKDGKPVPDH---NEPVFRIDSVRKEDKGMYQCVIRN--EQES----AQASGEL 213 (267)
Q Consensus 145 ~~~~g~~v~l~C~~~~~p~~~~~-W-~~~~~~~~~~---~~~~l~i~~~~~~d~g~y~C~~~~--~~~~----~~~~~~l 213 (267)
....|+.+.+.+.+.+.....+. | .++|..+... ....+. ..+..+|.|+-.+.- .... ......+
T Consensus 397 ~~lvG~~i~i~v~a~gg~~~lY~f~ik~ng~~ve~~~Y~~~~~~~---f~P~~~G~Y~IeV~vKdk~S~~~yD~~k~v~l 473 (667)
T PRK14081 397 HILKGEEIKIRVIAEGGTNLRYSFIIKKDGKEEEKIDYGKNNWVN---FIPEEKGNYELEVRVKDKYSDKEYDAHTIVYI 473 (667)
T ss_pred ceEeCCeEEEEEEecCCCeEEEEEEEEECCEEEEEeecccccEEE---EEECCCeeEEEEEEEecccCchhcccceEEEE
Confidence 45569999999999877544333 3 3467655432 223333 345788999987653 2221 2223444
Q ss_pred EEecccCCCe-ee--cCCceeEEecCCcEEEEEEeecCCCC--cEEEEECCEEc
Q psy3045 214 KLGGRFDPPV-IK--ESFSDETLNPGPNYYFKCIASGNPTP--EISWYLDGKKL 262 (267)
Q Consensus 214 ~v~~~~~~p~-~~--~~~~~~~~~~g~~~~l~C~~~~~p~~--~i~W~~~~~~l 262 (267)
.|.. ..|. +. ..+.......|+.++++|.+++.-.. .+.-+.||..+
T Consensus 474 ~V~e--~~P~~i~~il~~~~~~~~vg~~i~~~~~~~~~k~v~y~y~~~~NG~~v 525 (667)
T PRK14081 474 KVHE--YIPAEIDYILLPVKEYYLVGDDIEIEVIIQNTKDVLIKYILKINGHKV 525 (667)
T ss_pred EEec--cCceeeeeEEecccccEEeCCEEEEEEEEeCCCeEEEEEEEEECCEEE
Confidence 4432 3453 33 22333456789999999999876555 44445677655
No 414
>PHA03112 IL-18 binding protein; Provisional
Probab=81.29 E-value=11 Score=25.78 Aligned_cols=67 Identities=19% Similarity=0.235 Sum_probs=38.8
Q ss_pred EecCCCeEEEEEEecc-------eeeeecccCc--ceeccccCCceEE----------EEeeEEEEeecccC-CCeeEEE
Q psy3045 26 KKPGGESFALLCEAQE-------NMWFKFIEGS--SRKVAVPLNDRVK----------QVSGTLIIKEAKVE-DSGKYLC 85 (267)
Q Consensus 26 ~v~~g~~v~l~C~~~~-------~~W~~~~~~~--~~~~~~~~~~~~~----------~~~~~l~i~~~~~~-d~G~Y~C 85 (267)
...+|+++.|+|...+ +.|..++.+. .......+.++.+ .....|.+.+++.. ..-..+|
T Consensus 34 p~k~~~~vvL~C~gcs~fp~fS~lYWl~gn~~s~~d~~~~~hy~e~~~~~~~~~~~~~~~~~~l~l~~vt~~~~~T~~TC 113 (141)
T PHA03112 34 PTKETEKVVLECRGCSYFPKFSYVYWLIGNNKSDVDQKPIEHYGEGIYESEKPRTCDNEPRTDLIVYNVTDEMKFTKLTC 113 (141)
T ss_pred ccCCCCEEEEEEECccCCCCceEEEEEcCCCccchhccccccccccccCCccccccCCcceeEEEEEecCCcceecceEE
Confidence 4567999999999886 8899754221 1111112222222 12245666777654 2337888
Q ss_pred EEEcCCC
Q psy3045 86 VVNNSVG 92 (267)
Q Consensus 86 ~~~~~~~ 92 (267)
......+
T Consensus 114 VL~D~~~ 120 (141)
T PHA03112 114 VLMDLDG 120 (141)
T ss_pred EEecCCc
Confidence 8866544
No 415
>PF05790 C2-set: Immunoglobulin C2-set domain; InterPro: IPR008424 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C2-set domains, which are Ig-like domains resembling the antibody constant domain. C2-set domains are found primarily in the mammalian T-cell surface antigens CD2 (Cluster of Differentiation 2), CD4 and CD80, as well as in vascular (VCAM) and intercellular (ICAM) cell adhesion molecules. CD2 mediates T-cell adhesion via its ectodomain, and signal transduction utilising its 117-amino acid cytoplasmic tail []. CD2 displays structural and functional similarities with African swine fever virus (ASFV) LMW8-DR, a protein that is involved in cell-cell adhesion and immune response modulation, suggesting a possible role in the pathogenesis of ASFV infection []. CD4 is the primary receptor for HIV-1. CD4 has four immunoglobulin-like domains in its extracellular region that share the same structure, but can differ in sequence. Certain extracellular domains may be involved in dimerisation [].; GO: 0007155 cell adhesion, 0016021 integral to membrane; PDB: 1CID_A 1CDU_A 1WIQ_B 2NY4_B 2NY2_B 1WIP_B 1WIO_A 3S4S_G 1CDY_A 3S5L_G ....
Probab=81.29 E-value=10 Score=23.24 Aligned_cols=26 Identities=19% Similarity=0.364 Sum_probs=19.9
Q ss_pred EEEEeeEEEEeecccCCCeeEEEEEE
Q psy3045 63 VKQVSGTLIIKEAKVEDSGKYLCVVN 88 (267)
Q Consensus 63 ~~~~~~~l~i~~~~~~d~G~Y~C~~~ 88 (267)
.......+.....+..|+|...|.|.
T Consensus 38 ~~~~~~~~~~~~~~~~d~G~w~C~a~ 63 (80)
T PF05790_consen 38 SLETKKLVSTFTPTTEDSGTWVCTAS 63 (80)
T ss_dssp EEEESSEEEEESBTCGGSEEEEEEEE
T ss_pred ccccceEEEEecCCCCCCEEEEEEEc
Confidence 33445566777788899999999995
No 416
>PRK14081 triple tyrosine motif-containing protein; Provisional
Probab=79.88 E-value=44 Score=29.76 Aligned_cols=192 Identities=12% Similarity=0.115 Sum_probs=100.2
Q ss_pred EEecCCCeEEEEEEecc------eeeeecccCcceeccccCCceEEEEeeEEEEeecccCCCeeEEEEEEcCCCc-----
Q psy3045 25 FKKPGGESFALLCEAQE------NMWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYLCVVNNSVGG----- 93 (267)
Q Consensus 25 ~~v~~g~~v~l~C~~~~------~~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~----- 93 (267)
-.+..|+++.+.|.+.+ =.|.+. ++..... .--..+..+.+ .+.-+|.|+-.+.-....
T Consensus 396 ~~~lvG~~i~i~v~a~gg~~~lY~f~ik~-ng~~ve~------~~Y~~~~~~~f---~P~~~G~Y~IeV~vKdk~S~~~y 465 (667)
T PRK14081 396 KHILKGEEIKIRVIAEGGTNLRYSFIIKK-DGKEEEK------IDYGKNNWVNF---IPEEKGNYELEVRVKDKYSDKEY 465 (667)
T ss_pred CceEeCCeEEEEEEecCCCeEEEEEEEEE-CCEEEEE------eecccccEEEE---EECCCeeEEEEEEEecccCchhc
Confidence 45667999999999999 224332 1111100 00011223333 456789999888633221
Q ss_pred -cEEEEEEEEEeccccccCCceEEEeCCCceEEEEEeecCCCcccccCCceEEEecCCCEEEEeEeCCCCCceEE--EEE
Q psy3045 94 -ESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEGNPVKTIS--WMK 170 (267)
Q Consensus 94 -~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~~~--W~~ 170 (267)
....+.+.|.........-. +.+.......|+.+++.|.+++.....+. -..
T Consensus 466 D~~k~v~l~V~e~~P~~i~~i-------------------------l~~~~~~~~vg~~i~~~~~~~~~k~v~y~y~~~~ 520 (667)
T PRK14081 466 DAHTIVYIKVHEYIPAEIDYI-------------------------LLPVKEYYLVGDDIEIEVIIQNTKDVLIKYILKI 520 (667)
T ss_pred ccceEEEEEEeccCceeeeeE-------------------------EecccccEEeCCEEEEEEEEeCCCeEEEEEEEEE
Confidence 24556666654222111100 00111145568999999998876544333 334
Q ss_pred CCccCCC---CCCCeEEeccCCCCCCeEEEEEEEcCCCC------ceEEEEEEEecccCCCeeec--CCceeEEecCCcE
Q psy3045 171 DGKPVPD---HNEPVFRIDSVRKEDKGMYQCVIRNEQES------AQASGELKLGGRFDPPVIKE--SFSDETLNPGPNY 239 (267)
Q Consensus 171 ~~~~~~~---~~~~~l~i~~~~~~d~g~y~C~~~~~~~~------~~~~~~l~v~~~~~~p~~~~--~~~~~~~~~g~~~ 239 (267)
||.-... +....+++. +..+|.|+-.+.-.... ......+.|.. +.|.... .........+..+
T Consensus 521 NG~~v~~t~Ys~~~~ysf~---P~~~GkY~I~V~aKn~~s~~~~D~~k~v~~~V~e--~~pi~nt~~~~~~~~~~~n~~~ 595 (667)
T PRK14081 521 NGHKVEETDYIKNKKYKFI---PKCSGKYTIEVLAKNIKSTEEYDSKKEVKFYVRE--ALPITNTKIKTSKKKFKCNEEV 595 (667)
T ss_pred CCEEEEEeeccccceEEEe---ecCCceEEEEEEEcccccccccccceEEEEEEcC--CCCceeeEEEeecceEEcCCeE
Confidence 5544321 223444444 55689999876533211 22244455543 3343322 2344466778999
Q ss_pred EEEEEeecCCCCcEEEE
Q psy3045 240 YFKCIASGNPTPEISWY 256 (267)
Q Consensus 240 ~l~C~~~~~p~~~i~W~ 256 (267)
++.-.+.|.-..-+.+|
T Consensus 596 t~~~~~~gg~~v~Yef~ 612 (667)
T PRK14081 596 TFSVKSEGGKDVCYEFY 612 (667)
T ss_pred EEEEEccCCCcEEEEEE
Confidence 99888877666655444
No 417
>KOG0613|consensus
Probab=79.41 E-value=8.9 Score=36.06 Aligned_cols=121 Identities=8% Similarity=-0.091 Sum_probs=72.4
Q ss_pred EEecCCCEEEEeEeCCCCCceEEEEECCccCCCC--CCCeEEeccCCCCCCeEEEEEEEcCCCCceEEEEEEEecc---c
Q psy3045 145 TIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDH--NEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLGGR---F 219 (267)
Q Consensus 145 ~~~~g~~v~l~C~~~~~p~~~~~W~~~~~~~~~~--~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v~~~---~ 219 (267)
....+....|.|...+...+.+.|+.+....... ......+.+......+.|+|...+..+.......-.+... +
T Consensus 240 ~t~e~s~~~i~~~l~~~~G~~~~~~~~~l~e~~~~~~~~t~~i~~~~~~~~~s~t~~~~~~~~q~~~~v~~~~~i~~~~~ 319 (1205)
T KOG0613|consen 240 VTLEASDRKIQLTLRAPRGPYSAHILGYLIEQRKHKGGNTKTIQNDGPEPELSWTVADKRQGCQDRFKVTEEAPIGKGKP 319 (1205)
T ss_pred cccchhheeeeEEeecCCCchHHHHhcchhhhcccCCCccccccccCCccccceeeecccCCcccceeeeEEeecccccc
Confidence 3444555666666666665556665554332221 3455667777777888899998887765544333222211 0
Q ss_pred ----------CCC---eeecCCceeEEecCCcEEEEEEeecCCCCc-EEEEECCEEcCCC
Q psy3045 220 ----------DPP---VIKESFSDETLNPGPNYYFKCIASGNPTPE-ISWYLDGKKLVNA 265 (267)
Q Consensus 220 ----------~~p---~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~-i~W~~~~~~l~~~ 265 (267)
.+| .............+..+.+.|...+.+.|. +.||+++.....+
T Consensus 320 ~p~~~~~aaa~~~~~~v~~~~~~~v~a~d~~~v~m~~~~~~~~~p~~~~~~~~~~~~~~~ 379 (1205)
T KOG0613|consen 320 GPESLQAAAARPPEVPVGLVRNLSVTARDNTLVEMPTALSGTQKPDEAQGYHGEEVSSES 379 (1205)
T ss_pred CchhhhhhccCCccccccccccceeccccCcceeecccccCCcCCchheeeccccccccc
Confidence 111 111122334456688899999999998884 9999987665543
No 418
>PHA03281 envelope glycoprotein E; Provisional
Probab=79.24 E-value=40 Score=28.91 Aligned_cols=37 Identities=16% Similarity=0.327 Sum_probs=27.6
Q ss_pred eEEEEeecccCCCeeEEEEEEcCCCccEE-EEEEEEEe
Q psy3045 68 GTLIIKEAKVEDSGKYLCVVNNSVGGESV-ETVLTVTA 104 (267)
Q Consensus 68 ~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~-~~~l~V~~ 104 (267)
+.|.|.+++.+++|.|+-..+...|.... .+.+.|..
T Consensus 298 ~vL~I~nAT~~naGVYtly~rg~~G~s~~svfLVtVkg 335 (642)
T PHA03281 298 GVLKFEHMEAHHAGVYIWNLQGSDGENMYATFLVKLKG 335 (642)
T ss_pred CeeEEEecccccceeEEEEecCCCCcceeEEEEEEecC
Confidence 46899999999999999888866565433 45556654
No 419
>PF12988 DUF3872: Domain of unknown function, B. Theta Gene description (DUF3872); InterPro: IPR024355 This entry represents proteins of unknown function found primarily in Bacteroides species. The Bacteroides thetaiotaomicron gene coding for this protein is located in a conjugate transposon and appears to be upregulated in the presence of host or other bacterial species compared to growth in pure culture [, ].; PDB: 2L3B_A 2L7Q_A.
Probab=78.96 E-value=13 Score=25.22 Aligned_cols=40 Identities=20% Similarity=0.152 Sum_probs=18.3
Q ss_pred CCCCCcccccCCCcccCCCCceeEEecCCCeEEEEEEecc
Q psy3045 2 VGSDLKPVGFKAPTFSSVSDIIRFKKPGGESFALLCEAQE 41 (267)
Q Consensus 2 ~~~~~~~~~~~~P~~~~~~~~~~~~v~~g~~v~l~C~~~~ 41 (267)
.++++++...+.=.|.+..-+-...+..|++|.++|....
T Consensus 19 ~sC~deLDIQQ~YpF~v~tmPVpk~I~~GeTvEIR~~l~r 58 (137)
T PF12988_consen 19 SSCDDELDIQQAYPFTVETMPVPKKIKKGETVEIRCELKR 58 (137)
T ss_dssp ----TTS------SEEEEE----SS--TTEEEEEEEEEEE
T ss_pred hhcCCccceeecCCcEEEEeccccccCCCCEEEEEEEEec
Confidence 3566776555543344443335667889999999999877
No 420
>PF11049 KSHV_K1: Glycoprotein K1 of Kaposi's sarcoma-associated herpes virus; InterPro: IPR021022 This is a highly glycosylated cytoplasmic and membrane protein similar to the immunoglobulin receptor family that is expressed as an inducible early-lytic-cycle gene product in primary effusion lymphoma cell-lines. This domain would appear to be the cytoplasmic region of the protein [].
Probab=78.57 E-value=4 Score=23.58 Aligned_cols=44 Identities=18% Similarity=0.437 Sum_probs=29.5
Q ss_pred EEEeEeCCCCCceEEEEECCccCCCCCCCeEEeccCCCCCCeEEEEEEEc
Q psy3045 153 QFTCKYEGNPVKTISWMKDGKPVPDHNEPVFRIDSVRKEDKGMYQCVIRN 202 (267)
Q Consensus 153 ~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~ 202 (267)
+|+|..... .-++||-||..+-.-...++++..+ .++|+|.-..
T Consensus 2 tltC~s~~s--LPiswYcN~TRLlRlt~~Tlt~~~l----tcNFtCV~qS 45 (71)
T PF11049_consen 2 TLTCPSNAS--LPISWYCNGTRLLRLTQQTLTVVTL----TCNFTCVGQS 45 (71)
T ss_pred ceecCCCCC--CcccEEECCceeeeecCCeEeeeee----eEEeeecCCC
Confidence 467765543 2378999998876666666666543 4788887544
No 421
>PHA03240 envelope glycoprotein M; Provisional
Probab=78.52 E-value=4.7 Score=29.53 Aligned_cols=63 Identities=19% Similarity=0.220 Sum_probs=38.2
Q ss_pred eEEecCCCeEEEEEEecc-----eeeee-------cccCcceec--------------ccc-CCceEE--EEeeEEEEee
Q psy3045 24 RFKKPGGESFALLCEAQE-----NMWFK-------FIEGSSRKV--------------AVP-LNDRVK--QVSGTLIIKE 74 (267)
Q Consensus 24 ~~~v~~g~~v~l~C~~~~-----~~W~~-------~~~~~~~~~--------------~~~-~~~~~~--~~~~~l~i~~ 74 (267)
.+.+.+|++|+|.-.-.. +.|++ +..+..... ... .+.++. =.+++|.|.+
T Consensus 32 evt~r~G~nVTLga~~~lhpgq~v~Wy~~~c~~~~G~G~~~~plC~Ytppk~~r~ktl~~t~~nt~i~y~C~NstL~i~~ 111 (258)
T PHA03240 32 EHTTREGDPLLLGGGHGLGAGQKAHWYKHKCDGITGNGDKLHPICTYDPPKNGKGKTLDESAENSFILYECHNSTLIIAH 111 (258)
T ss_pred ecccccCCceeeCCcccCCCCCEEEEEeeecccccCCCCCCceeEEecCCccccccccccccCCCceEEEeccceEEEEE
Confidence 567889999998765332 99998 211111100 000 011121 2467999999
Q ss_pred cccCCCeeEEEE
Q psy3045 75 AKVEDSGKYLCV 86 (267)
Q Consensus 75 ~~~~d~G~Y~C~ 86 (267)
+..+|.|+|.=.
T Consensus 112 vn~sd~~nYcr~ 123 (258)
T PHA03240 112 LNLSDAGEYCRK 123 (258)
T ss_pred EeecCcchhhhc
Confidence 999999998433
No 422
>PHA03283 envelope glycoprotein E; Provisional
Probab=76.23 E-value=47 Score=28.35 Aligned_cols=80 Identities=13% Similarity=0.238 Sum_probs=50.9
Q ss_pred CCCCeEEeccCCCCCCeEEEEEEEcCCCCceEEEEEEEeccc-----CCCeeec-CC------------ceeEEecCCcE
Q psy3045 178 HNEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLGGRF-----DPPVIKE-SF------------SDETLNPGPNY 239 (267)
Q Consensus 178 ~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v~~~~-----~~p~~~~-~~------------~~~~~~~g~~~ 239 (267)
.+...|.|.+++.+++|.|+=...+..+.....+.+.|.... .||.... .+ .......|+++
T Consensus 131 ~~~~~l~I~~at~~~aGVYtly~r~d~~~~~~vflvtVk~~~~~~~~~Pp~~~pv~P~~h~a~f~v~nYhS~vf~~GDtf 210 (542)
T PHA03283 131 PERSVLQIQRATPNIAGVYTLHVSSDGMMKHSVFFVTVKKPPKQPQTPPAPLVPQVPARHHTDFHVRGYHSRVYSPGDSF 210 (542)
T ss_pred CCCCeeEEEecccccCeEEEEEecCCCceEEEEEEEEecCCCcCCCCCCCCccccCCccCCceEEEecceeEEecCCCce
Confidence 356889999999999999999999877655556666665411 1121111 11 12234579998
Q ss_pred EEEEEeecCC--C---CcEEEEE
Q psy3045 240 YFKCIASGNP--T---PEISWYL 257 (267)
Q Consensus 240 ~l~C~~~~~p--~---~~i~W~~ 257 (267)
.+.-..+... + ..|.||+
T Consensus 211 ~lsi~l~s~~~d~~fs~~i~Wyy 233 (542)
T PHA03283 211 DLSVHLESDIGDPSFSATIDWYY 233 (542)
T ss_pred eEeEEEeeccCCCCceEEEEEEE
Confidence 8876554322 2 3799997
No 423
>PF02440 Adeno_E3_CR1: Adenovirus E3 region protein CR1; InterPro: IPR003471 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D virus) 49 Kd protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=75.49 E-value=9.2 Score=22.15 Aligned_cols=21 Identities=24% Similarity=0.539 Sum_probs=14.7
Q ss_pred ecCCCeEEEEEEecc-eeeeec
Q psy3045 27 KPGGESFALLCEAQE-NMWFKF 47 (267)
Q Consensus 27 v~~g~~v~l~C~~~~-~~W~~~ 47 (267)
|..|++++|.=.... +.|++.
T Consensus 2 v~~G~N~TL~Gp~~~~V~Wy~~ 23 (63)
T PF02440_consen 2 VTVGSNVTLVGPPDGPVTWYKF 23 (63)
T ss_pred EeEcCcEEEeCCCCCceEEEEe
Confidence 567888888766333 999854
No 424
>cd05890 Ig2_Nectin-1_like Second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins. Ig2_Nectin-1_like: domain similar to the second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectins also heterophilically trans-interact with other CAMs such as nectin-like molecules (necls); nectin-1 for example, has been shown to trans-interact with necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is associ
Probab=74.92 E-value=12 Score=23.75 Aligned_cols=56 Identities=18% Similarity=0.445 Sum_probs=32.6
Q ss_pred EEEEeE-eCCCCCceEEEEE--CCcc-C--CCCCC------CeEEeccCCCCCCeEEEEEEEcCCCCc
Q psy3045 152 AQFTCK-YEGNPVKTISWMK--DGKP-V--PDHNE------PVFRIDSVRKEDKGMYQCVIRNEQESA 207 (267)
Q Consensus 152 v~l~C~-~~~~p~~~~~W~~--~~~~-~--~~~~~------~~l~i~~~~~~d~g~y~C~~~~~~~~~ 207 (267)
+...|. +.|.|++.|+|.- +|.. . ....+ +.+.+......|.-..+|.+.++....
T Consensus 23 ~VA~CiSa~GrPpa~ItW~t~l~G~~etq~~~~~~GT~TV~S~y~lVPs~~~~gk~lTCvV~h~~~~~ 90 (98)
T cd05890 23 LVATCVSANGKPPSVVRWDTRLKGEAEFQEIRNQNGTVTVISRYRLVPSREAHKQKLTCIVNYRNDRF 90 (98)
T ss_pred EEEEEEcCCCcCCcEeEEEccCCCceeeeeeCCCCCCEEEEEEEEEeECHHHcCCEeEEEEEeccccc
Confidence 566898 5678999999974 2321 0 01111 233334444555668889988864433
No 425
>PF03921 ICAM_N: Intercellular adhesion molecule (ICAM), N-terminal domain; InterPro: IPR013768 Intercellular adhesion molecules (ICAMs) and vascular cell adhesion molecule-1 (VCAM-1) are part of the immunoglobulin superfamily. They are important in inflammation, immune responses and in intracellular signalling events []. The ICAM family consists of five members, designated ICAM-1 to ICAM-5. They are known to bind to leucocyte integrins CD11/CD18 during inflammation and in immune responses. In addition, ICAMs may exist in soluble forms in human plasma, due to activation and proteolysis mechanisms at cell surfaces. ICAM-1 (CD54) contains five Ig-like domains. It is expressed on leucocytes, endothelial and epithelial cells, and is upregulated in response to bacterial invasion. The protein is a ligand for lymphocyte-function associated (LFA) antigens and also a receptor for CD11a,b/CD18, fibrinogen, human rhinovirus and Plasmodium falciparum-infected erythrocytes. ICAM-1 binding sites for CD11a/CD18 and its other binding partners are located in the first domain and are overlapping. ICAM-1 domain 2 seems to play an important role in maintaining the conformation of domain 1 and particularly the structural integrity of the LFA-1 ligand-binding site []. The 3-dimensional atomic structure of the tandem N-terminal Ig-like domains (D1 and D2) of ICAM-1 has been determined to 2.2A resolution and fitted into a cryoelectron microscopy reconstruction of a rhinovirus-ICAM-1 complex []. Extensive charge interactions between ICAM-1 and human rhinovirusesare largely conserved in major and minor receptor groups of rhinoviruses. The interaction of ICAMs with LFA-1 is mediated by a divalent cation bound to the insertion (I)-domain on the alpha chain of LFA-1 and the carboxyl group of a conserved glutamic acid residue on ICAMs. ICAM-2 (CD102) has two Ig-like domains. It is expressed on endothelial cells, leucocytes and platelets, and binds to CD11a'b/CD18. The protein is refractory to proinflammatory cytokines, and plays an important role in the adhesion of leucocytes to the uninduced endothelium []. ICAM-3 (CD50) contains five Ig-like domains and binds to leucocyte integrins CD11a'd/CD18. The protein plays an important role in the immune response and perhaps in signal transduction []. ICAM-4 (LW blood group Ag) is red blood cell (RBC) specific and binds to CD11a'b/CD18. It is associated with the RBC Rh antigens and could be important in retaining immature red cells in the bone marrow, or in the uptake of senescent cells into the spleen []. ICAM-5 (telencephalin) has nine Ig-like domains and is confined to the telencephalon of the brain. The role of this CD11a/CD18 binding molecule is not yet known []. VCAM-1 was first described as a cytokine-inducible endothelial adhesion molecule. It can bind to leucocyte integrin VL-4 (very late antigen-4) to recruit leucocytes to sites of inflammation []. The predominant form of VCAM-1 in vivo has an N-terminal extracellular region comprising seven Ig-like domains []. A conserved integrin-binding motif has been identified in domains 1 and 4, variants of which are present in the N-terminal domain of all members of the integrin-binding subgroup of the immunoglobulin superfamily. The structure of a VLA-4-binding fragment comprising the first two domains of VCAM-1 has been determined to 1.8A resolution. The integrin-binding motif is exposed and forms the N-terminal region of the loop between beta-strands C and D of domain 1 []. VCAM-1 domains 1 and 2 are structurally similar to ICAM-1 and ICAM-2 []. This entry represents the N-terminal domain of ICAM proteins such as ICAM-2, ICAM-3 and ICAM-4.; PDB: 3BN3_B 1T0P_B 1ZXQ_A 3TCX_A 1MQ8_A 1Z7Z_I 1IC1_A 1IAM_A.
Probab=69.75 E-value=24 Score=22.22 Aligned_cols=75 Identities=13% Similarity=0.204 Sum_probs=41.0
Q ss_pred CCceEEEecCCCEEEEeEeCCCCCceEEEEE--CCccCCCC-CCCeEEeccCCCCCCeEEEEEEEcCCCCceEEEEEEEe
Q psy3045 140 EPTVQTIDFGRPAQFTCKYEGNPVKTISWMK--DGKPVPDH-NEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLG 216 (267)
Q Consensus 140 ~~~~~~~~~g~~v~l~C~~~~~p~~~~~W~~--~~~~~~~~-~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v~ 216 (267)
.|....+..|+++.+.|..+=..+..+.|.- ....+..+ .=..+.+.+++. .....|.+.-.......+..+.|.
T Consensus 9 ~P~~~vV~~G~Sv~VNCStsC~~p~~~GLET~L~k~~~~~g~~W~~f~LsnV~~--ds~~~C~~~C~g~Q~~~~~~ItVY 86 (91)
T PF03921_consen 9 SPEEPVVPPGGSVWVNCSTSCPQPEKIGLETSLSKTELDSGPQWKAFQLSNVTE--DSSPLCFFNCSGEQSSASANITVY 86 (91)
T ss_dssp ESSEEEEETTEEEEEEEEESSSS-SEEEEESSSEEEEEEEETTEEEEEEEEE-S--CEEEEEEEEETTEEEEEEEEEEEE
T ss_pred ECCccEECCCCCEEEEEcCCCCCCCcceEEEecCCcccCCCCcEEEEEEEcccc--CCeEEEEEEcCCeEEEeEEeeEEe
Confidence 3556688999999999987522223444431 11111111 113455666764 456789988654344445566553
No 426
>PF15096 G6B: G6B family
Probab=67.95 E-value=5.2 Score=28.53 Aligned_cols=22 Identities=18% Similarity=0.401 Sum_probs=16.8
Q ss_pred eEEecCCCeEEEEEEecc--eeee
Q psy3045 24 RFKKPGGESFALLCEAQE--NMWF 45 (267)
Q Consensus 24 ~~~v~~g~~v~l~C~~~~--~~W~ 45 (267)
.+.-..|+.|+|.|.-.. +.|-
T Consensus 5 sLeGrPGDRVnlSCvGVs~p~RWa 28 (224)
T PF15096_consen 5 SLEGRPGDRVNLSCVGVSHPIRWA 28 (224)
T ss_pred cccCCCCCeeeeeeccCCCcceee
Confidence 345678999999998776 6664
No 427
>KOG1026|consensus
Probab=66.14 E-value=13 Score=33.44 Aligned_cols=72 Identities=17% Similarity=0.246 Sum_probs=46.0
Q ss_pred eEEEecCCCEEEEeEeCCCCCceEEEEECCccCCCCCC-CeEEeccCCCCCCeEEEEEEEcCCCCceEEEEEEEe
Q psy3045 143 VQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNE-PVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLG 216 (267)
Q Consensus 143 ~~~~~~g~~v~l~C~~~~~p~~~~~W~~~~~~~~~~~~-~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~l~v~ 216 (267)
...+..|..+++.|...+.|.+...|+.++........ ..+....... .-++.|.+.+..+.......+.+.
T Consensus 201 ~~~v~~~~~~~~~c~~~~~~vp~~~~~~~~~~~~~~~~~~~~c~~~~~~--~~~~~c~~E~~~~~~~~~v~~~~~ 273 (774)
T KOG1026|consen 201 NLTVEEGSSITLKCSQAGIPVPCHYWFPNCLASSNTNQTSSLCRSECEV--LENDLCIAENAVARSNPSILLVVD 273 (774)
T ss_pred hhhhcccchheeeeecccCCCcceeeecccccccCCCccccccccccee--eechhhHHHHhhhhcCceeeeEEe
Confidence 34677789999999999999999999987766544222 1111111100 112789988887766655555554
No 428
>PHA03189 UL14 tegument protein; Provisional
Probab=64.42 E-value=69 Score=25.29 Aligned_cols=23 Identities=39% Similarity=0.725 Sum_probs=17.0
Q ss_pred cCCCCCCeEEEEEEEcCCCCceE
Q psy3045 187 SVRKEDKGMYQCVIRNEQESAQA 209 (267)
Q Consensus 187 ~~~~~d~g~y~C~~~~~~~~~~~ 209 (267)
.+..+.+|.|.|...|.......
T Consensus 139 ~v~t~taG~Y~CvLrN~tHglv~ 161 (348)
T PHA03189 139 RVSTSTAGMYECVLRNETHGLVL 161 (348)
T ss_pred EEEecccceEEEEeccccceeee
Confidence 45667899999999987644333
No 429
>PHA03286 envelope glycoprotein E; Provisional
Probab=61.16 E-value=1e+02 Score=26.00 Aligned_cols=81 Identities=15% Similarity=0.080 Sum_probs=50.7
Q ss_pred CCCCCeEEeccCCCCCCeEEEEEEEcCCCCceE-EEEEEEecc--cCCCeee--cCC------------ceeEEecCCcE
Q psy3045 177 DHNEPVFRIDSVRKEDKGMYQCVIRNEQESAQA-SGELKLGGR--FDPPVIK--ESF------------SDETLNPGPNY 239 (267)
Q Consensus 177 ~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~-~~~l~v~~~--~~~p~~~--~~~------------~~~~~~~g~~~ 239 (267)
......|.|.+.+.+.+|.|+=...|..+.... .+.+.|... ..+|... +.+ .......|+++
T Consensus 123 t~~~~~L~I~nAt~qnaGiYtly~rnd~~~~~~~vflVtV~~~~~~r~p~~~~pv~p~~~~~~f~l~ny~S~lF~~GDTF 202 (492)
T PHA03286 123 TGRGKELTILNASSQNAGIYIRYSRNGTRTAVMDVLVVWVSGHGRARDPTMNIPITPPSTRVDLSLKNFKAFLYNVGDTV 202 (492)
T ss_pred cCCCCceEEeeccccccceEEEEEcCCCCcEEEEEEEEEEecCCCCCCCCcccCCCCcccceEEEEecccceEecCCCeE
Confidence 345688999999999999999999987655444 455555422 1222222 111 12234579998
Q ss_pred EEEEEee-c-CCC---CcEEEEE
Q psy3045 240 YFKCIAS-G-NPT---PEISWYL 257 (267)
Q Consensus 240 ~l~C~~~-~-~p~---~~i~W~~ 257 (267)
.++-... . ... ..|.||+
T Consensus 203 ~vSv~l~~~~~d~~Fsl~i~W~y 225 (492)
T PHA03286 203 DASVTAHLTNWAGAFSLEFRVLF 225 (492)
T ss_pred EEEEEEeecccCCCceEEEEEEE
Confidence 7776554 2 222 3799997
No 430
>PHA03281 envelope glycoprotein E; Provisional
Probab=55.59 E-value=1.4e+02 Score=25.91 Aligned_cols=79 Identities=15% Similarity=0.294 Sum_probs=48.6
Q ss_pred CCCeEEeccCCCCCCeEEEEEEEcCCCC-ceEEEEEEEeccc----CCCeeecCCc----------eeEEecCCcEEEEE
Q psy3045 179 NEPVFRIDSVRKEDKGMYQCVIRNEQES-AQASGELKLGGRF----DPPVIKESFS----------DETLNPGPNYYFKC 243 (267)
Q Consensus 179 ~~~~l~i~~~~~~d~g~y~C~~~~~~~~-~~~~~~l~v~~~~----~~p~~~~~~~----------~~~~~~g~~~~l~C 243 (267)
..+.|.|.+++.+.+|.|+=......|. ....+.+.|.... .+|.+..... ......|+++.+.-
T Consensus 296 ~~~vL~I~nAT~~naGVYtly~rg~~G~s~~svfLVtVkg~~~~rip~p~Vtpk~hga~F~vknYhShVF~pGDTFsl~v 375 (642)
T PHA03281 296 EPGVLKFEHMEAHHAGVYIWNLQGSDGENMYATFLVKLKGDEENHIDLPAVTPKPKGAEFHMWHYHSHVFSVGDTFSLAM 375 (642)
T ss_pred cCCeeEEEecccccceeEEEEecCCCCcceeEEEEEEecCCcccCCCCCCccccccCceEEEeccceeEecCCCeeEEEE
Confidence 4578999999999999999888755443 3335666665421 1222221111 12245689888777
Q ss_pred EeecC--CCC---cEEEEE
Q psy3045 244 IASGN--PTP---EISWYL 257 (267)
Q Consensus 244 ~~~~~--p~~---~i~W~~ 257 (267)
..... ..+ .|.||+
T Consensus 376 ~L~s~ihD~pFsleI~Wyy 394 (642)
T PHA03281 376 HLQYKIHDAPFDLLLEWLY 394 (642)
T ss_pred EEeeeccCCCceeEEEEEE
Confidence 66532 333 799997
No 431
>PF01688 Herpes_gI: Alphaherpesvirus glycoprotein I; InterPro: IPR002874 This family consists of glycoprotein I from various members of the alphaherpesvirinae. These include Human herpesvirus 1 (HHV-1), Human herpesvirus 3 (HHV-3) and Suid herpesvirus 1 (Pseudorabies virus). Glycoprotein I (gI) is important during natural infection, mutants lacking gI produce smaller lesions at the site of infection and show reduced neuronal spread []. gI forms a heterodimeric complex with gE; this complex displays Fc receptor activity (binds to the Fc region of immunoglobulin) []. Glycoproteins are also important in the production of virus-neutralizing antibodies and cell mediated immunity []. The alphaherpesviridae have a dsDNA genome and have no RNA stage during viral replication.; GO: 0033643 host cell part
Probab=53.44 E-value=37 Score=24.04 Aligned_cols=25 Identities=32% Similarity=0.312 Sum_probs=21.2
Q ss_pred EEEEeecccCCCeeEEEEEEcCCCc
Q psy3045 69 TLIIKEAKVEDSGKYLCVVNNSVGG 93 (267)
Q Consensus 69 ~l~i~~~~~~d~G~Y~C~~~~~~~~ 93 (267)
-|+|.+.+.+|+|.|.-.++-....
T Consensus 125 lL~i~~p~~~dsG~Y~lRV~l~~~~ 149 (161)
T PF01688_consen 125 LLRIRNPRPEDSGIYYLRVWLDGAN 149 (161)
T ss_pred EEEeCCCCcccceEEEEEEEECCCC
Confidence 5899999999999999999855433
No 432
>PF09085 Adhes-Ig_like: Adhesion molecule, immunoglobulin-like; InterPro: IPR015169 This domain is found in mucosal vascular addressin cell adhesion molecule 1 proteins (MAdCAM-1). These are cell adhesion molecules expressed on the endothelium in mucosa that guide the specific homing of lymphocytes into mucosal tissues. MAdCAM-1 belongs to a subclass of the immunoglobulin superfamily (IgSF), the members of which are ligands for integrins []. The crystal structure of this domain has been reported; it adopts an immunoglobulin-like beta-sandwich structure, with seven strands arranged in two beta-sheets in a Greek-key topology [, ].; GO: 0007155 cell adhesion, 0016020 membrane; PDB: 1GSM_A 1BQS_A.
Probab=52.84 E-value=26 Score=22.16 Aligned_cols=33 Identities=27% Similarity=0.450 Sum_probs=21.5
Q ss_pred EEecCCcEEEEEEeecC----CCC-cEEEEECCEEcCC
Q psy3045 232 TLNPGPNYYFKCIASGN----PTP-EISWYLDGKKLVN 264 (267)
Q Consensus 232 ~~~~g~~~~l~C~~~~~----p~~-~i~W~~~~~~l~~ 264 (267)
.+..|..-.+.|.+... |.. ++.|+.+++.+..
T Consensus 12 ~LVpg~dqevaCTAhnVtP~~p~~LSfslllGdqeLeg 49 (110)
T PF09085_consen 12 ALVPGRDQEVACTAHNVTPADPDALSFSLLLGDQELEG 49 (110)
T ss_dssp SB-TT--SEEEEEEEEEB--STTTEEEEEEETTEE-TT
T ss_pred HhccCCCceeeeeeccccCCCCCeEEeeeeeCceeecc
Confidence 45678888899999643 222 7999999998753
No 433
>KOG3611|consensus
Probab=50.65 E-value=42 Score=30.43 Aligned_cols=72 Identities=25% Similarity=0.407 Sum_probs=43.5
Q ss_pred eEEEEEEecc----eeeeecccCcceeccccCCceEEEE-eeEEEEeecccCCCeeEEEEEEcCC-CccEEEEEEEEE
Q psy3045 32 SFALLCEAQE----NMWFKFIEGSSRKVAVPLNDRVKQV-SGTLIIKEAKVEDSGKYLCVVNNSV-GGESVETVLTVT 103 (267)
Q Consensus 32 ~v~l~C~~~~----~~W~~~~~~~~~~~~~~~~~~~~~~-~~~l~i~~~~~~d~G~Y~C~~~~~~-~~~~~~~~l~V~ 103 (267)
+..|.|...+ +.|+....+...........+...+ .+.+.+..++..|.|.|.|.+.... -.....+.+.+.
T Consensus 571 ~~~l~c~~~~~~a~~~w~~~~~~~~~~~~~~~~~~~~~~~~G~lll~~~q~~~~G~y~c~~~e~~~~~~~~~~~~~~~ 648 (737)
T KOG3611|consen 571 SEVLRCVPSSNQAPVVWYHQSTKDGRKEEVRQRDVVSRTDEGGLVLLSVQKLDGGTYPCYADESSFVSTVISVNLHVA 648 (737)
T ss_pred cceeeccccccccceeeEeeccCccccceeccCcceeecccCceeEEEEeeccCcccccccccCccccceEEEeeeec
Confidence 5789998877 7798543333322233333333333 3448888999999999999997543 223344444443
No 434
>KOG1026|consensus
Probab=49.78 E-value=52 Score=29.81 Aligned_cols=70 Identities=21% Similarity=0.335 Sum_probs=38.9
Q ss_pred eEEecCCCeEEEEEEecc-----eeeeecccCcceeccccCCceEEEEeeEEEEeecccCCCeeEEEEEEcCCCccEEEE
Q psy3045 24 RFKKPGGESFALLCEAQE-----NMWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYLCVVNNSVGGESVET 98 (267)
Q Consensus 24 ~~~v~~g~~v~l~C~~~~-----~~W~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~ 98 (267)
...+..|..+++.|...+ ..|+.......... ....... .......+ +.|.+.|..+.....+
T Consensus 201 ~~~v~~~~~~~~~c~~~~~~vp~~~~~~~~~~~~~~~---~~~~~c~---~~~~~~~~------~~c~~E~~~~~~~~~v 268 (774)
T KOG1026|consen 201 NLTVEEGSSITLKCSQAGIPVPCHYWFPNCLASSNTN---QTSSLCR---SECEVLEN------DLCIAENAVARSNPSI 268 (774)
T ss_pred hhhhcccchheeeeecccCCCcceeeecccccccCCC---ccccccc---ccceeeec------hhhHHHHhhhhcCcee
Confidence 356789999999999998 66766422111100 0111110 11111111 7899988888766666
Q ss_pred EEEEEec
Q psy3045 99 VLTVTAP 105 (267)
Q Consensus 99 ~l~V~~~ 105 (267)
.+.+..+
T Consensus 269 ~~~~~~p 275 (774)
T KOG1026|consen 269 LLVVDLP 275 (774)
T ss_pred eeEEecc
Confidence 6655543
No 435
>PF00801 PKD: PKD domain; InterPro: IPR000601 The PKD (Polycystic Kidney Disease) domain was first identified in the Polycystic Kidney Disease protein, polycystin-1 (PDK1 gene), and contains an Ig-like fold consisting of a beta-sandwich of seven strands in two sheets with a Greek key topology, although some members have additional strands []. Polycystin-1 is a large cell-surface glycoprotein involved in adhesive protein-protein and protein-carbohydrate interactions; however it is not clear if the PKD domain mediates any of these interactions. PKD domains are also found in other proteins, usually in the extracellular parts of proteins involved in interactions with other proteins. For example, domains with a PKD-type fold are found in archaeal surface layer proteins that protect the cell from extreme environments [], and in the human VPS10 domain-containing receptor SorCS2 [].; PDB: 1B4R_A 2KZW_A 2C4X_A 2C26_A 2Y72_B 3JQU_A 3JS7_B 1WGO_A 1L0Q_A.
Probab=46.70 E-value=57 Score=18.86 Aligned_cols=56 Identities=20% Similarity=0.293 Sum_probs=31.9
Q ss_pred EEecCCCEEEEeEeCCCCCceEEEEECC-ccCCCCCCCeEEeccCCCCCCeEEEEEE--EcCCC
Q psy3045 145 TIDFGRPAQFTCKYEGNPVKTISWMKDG-KPVPDHNEPVFRIDSVRKEDKGMYQCVI--RNEQE 205 (267)
Q Consensus 145 ~~~~g~~v~l~C~~~~~p~~~~~W~~~~-~~~~~~~~~~l~i~~~~~~d~g~y~C~~--~~~~~ 205 (267)
.+..|+.+.|...........+.|.+++ ............. ...|.|.-.+ .+..+
T Consensus 7 ~~~~g~~v~f~~~~~~g~~~~y~W~fgd~~~~~~~~~~t~ty-----~~~G~y~V~ltv~n~~g 65 (69)
T PF00801_consen 7 YVPTGQPVTFTASSSDGSPVTYSWDFGDNGTVSTGSSVTHTY-----SSPGTYTVTLTVTNGVG 65 (69)
T ss_dssp CEBTTSEEEEEETTTTSSECEEEEE-SSESEEECSSEEEEEE-----SSSEEEEEEEEEEETTS
T ss_pred EEcCCCEEEEEEEccCCCCeEEEEEECCCCccccCCCEEEEc-----CCCeEEEEEEEEEECCC
Confidence 5667888998887744446689999988 2221222222222 2478887554 45444
No 436
>PF02010 REJ: REJ domain; InterPro: IPR002859 The REJ (Receptor for Egg Jelly) domain is found in PKD1 P98161 from SWISSPROT and the sperm receptor for egg jelly Q26627 from SWISSPROT. The exact function of this domain is unknown. The domain is 600 amino acids long so is probably composed of multiple structural domains. There are six completely conserved cysteine residues that may form disulphide bridges. This region contains tandem PKD-like domains. Sequence similarity between a region of the autosomal dominant polycystic kidney disease (ADPKD) protein, polycystin-1 and a sea urchin sperm glycoprotein involved in fertilization, the receptor for egg jelly (suREJ) has been known for some time. The suREJ protein binds the glycoprotein coat of the egg (egg jelly), triggering the acrosome reaction, which transforms the sperm into a fusogenic cell. The sequence similarity and expression pattern suggests that the predicted human PKDREJ protein is a mammalian equivalent of the suREJ protein and therefore may have a central role in human fertilization [].; PDB: 2E7M_A 2YRL_A.
Probab=42.09 E-value=83 Score=26.40 Aligned_cols=76 Identities=20% Similarity=0.291 Sum_probs=0.0
Q ss_pred CeEEeccCCCCCCeEEEEE--EEcCCC-CceEEEEEEEecccCCCeeecCCce---eEEecCCcEEEEEEeecCC----C
Q psy3045 181 PVFRIDSVRKEDKGMYQCV--IRNEQE-SAQASGELKLGGRFDPPVIKESFSD---ETLNPGPNYYFKCIASGNP----T 250 (267)
Q Consensus 181 ~~l~i~~~~~~d~g~y~C~--~~~~~~-~~~~~~~l~v~~~~~~p~~~~~~~~---~~~~~g~~~~l~C~~~~~p----~ 250 (267)
..+.|..........|.-. +....+ .......+.+.. ..+|.+.+.... ..+..++.+.|.-.+.+.+ .
T Consensus 148 ~~l~i~~~~l~~~~~y~f~ltv~k~~r~s~s~~~~v~v~~-~~~p~v~I~~~~n~~~~vn~~~~l~L~~~~~~~~~~~~~ 226 (440)
T PF02010_consen 148 SSLTIPASTLSPGSTYTFTLTVSKGSRSSSSASQTVTVVS-GDPPTVSISCVSNCKGKVNPSERLVLQASCSSCDSDSSN 226 (440)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEEEEEhHHcCCCceEEEEEEEEeCCCCceeeEEEEEecc-CCCCceeEccccccccccCCCCCEEEEEEEeCCCCcCCC
Confidence 4455543332222225544 444333 222333343432 244554443322 2367788887765555432 3
Q ss_pred CcEEEEE
Q psy3045 251 PEISWYL 257 (267)
Q Consensus 251 ~~i~W~~ 257 (267)
..+.|..
T Consensus 227 ~~y~Wsl 233 (440)
T PF02010_consen 227 VSYSWSL 233 (440)
T ss_dssp -------
T ss_pred EEEEEEE
Confidence 4788876
No 437
>PHA03290 envelope glycoprotein I; Provisional
Probab=38.35 E-value=87 Score=25.10 Aligned_cols=25 Identities=28% Similarity=0.389 Sum_probs=21.2
Q ss_pred eEEEEeecccCCCeeEEEEEEcCCC
Q psy3045 68 GTLIIKEAKVEDSGKYLCVVNNSVG 92 (267)
Q Consensus 68 ~~l~i~~~~~~d~G~Y~C~~~~~~~ 92 (267)
--|+|.+...+|+|.|.-+++-...
T Consensus 129 vLL~I~~P~~~DSGiY~LRV~Ldga 153 (357)
T PHA03290 129 IIFKINKPGIEDAGIYLLLVQLDHS 153 (357)
T ss_pred eEEEeCCCCcccCeeEEEEEEeCCC
Confidence 3689999999999999999985543
No 438
>COG5475 Uncharacterized small protein [Function unknown]
Probab=36.46 E-value=74 Score=17.82 Aligned_cols=23 Identities=17% Similarity=0.300 Sum_probs=16.8
Q ss_pred EEEEeecccCCCeeEEEEEEcCCCc
Q psy3045 69 TLIIKEAKVEDSGKYLCVVNNSVGG 93 (267)
Q Consensus 69 ~l~i~~~~~~d~G~Y~C~~~~~~~~ 93 (267)
.+++...+. .|.|.|.-.+..|.
T Consensus 19 ~Mtvs~~ss--~Gmy~C~Wf~g~g~ 41 (60)
T COG5475 19 RMTVSGYSS--DGMYECRWFDGYGV 41 (60)
T ss_pred eEEEecccc--CCeEEEEEecCCCc
Confidence 566665544 49999999888774
No 439
>PF01688 Herpes_gI: Alphaherpesvirus glycoprotein I; InterPro: IPR002874 This family consists of glycoprotein I from various members of the alphaherpesvirinae. These include Human herpesvirus 1 (HHV-1), Human herpesvirus 3 (HHV-3) and Suid herpesvirus 1 (Pseudorabies virus). Glycoprotein I (gI) is important during natural infection, mutants lacking gI produce smaller lesions at the site of infection and show reduced neuronal spread []. gI forms a heterodimeric complex with gE; this complex displays Fc receptor activity (binds to the Fc region of immunoglobulin) []. Glycoproteins are also important in the production of virus-neutralizing antibodies and cell mediated immunity []. The alphaherpesviridae have a dsDNA genome and have no RNA stage during viral replication.; GO: 0033643 host cell part
Probab=31.36 E-value=1.7e+02 Score=20.90 Aligned_cols=26 Identities=31% Similarity=0.474 Sum_probs=21.4
Q ss_pred CCCeEEeccCCCCCCeEEEEEEEcCC
Q psy3045 179 NEPVFRIDSVRKEDKGMYQCVIRNEQ 204 (267)
Q Consensus 179 ~~~~l~i~~~~~~d~g~y~C~~~~~~ 204 (267)
..--|.|.+.+.+|+|.|.-.+.-..
T Consensus 122 ~~~lL~i~~p~~~dsG~Y~lRV~l~~ 147 (161)
T PF01688_consen 122 NGVLLRIRNPRPEDSGIYYLRVWLDG 147 (161)
T ss_pred cceEEEeCCCCcccceEEEEEEEECC
Confidence 44568999999999999998887544
No 440
>PHA03292 envelope glycoprotein I; Provisional
Probab=31.18 E-value=1.2e+02 Score=24.89 Aligned_cols=37 Identities=22% Similarity=0.139 Sum_probs=26.7
Q ss_pred eEEEEeecccCCCeeEEEEEEcCCCc--cEEEEEEEEEe
Q psy3045 68 GTLIIKEAKVEDSGKYLCVVNNSVGG--ESVETVLTVTA 104 (267)
Q Consensus 68 ~~l~i~~~~~~d~G~Y~C~~~~~~~~--~~~~~~l~V~~ 104 (267)
--|.|.+...+|+|.|.-.++-.... +-..+.+.|..
T Consensus 128 vLL~I~~P~~~DSGiY~LRV~Ldga~~aDvF~lsvfVy~ 166 (413)
T PHA03292 128 VLLNITGPQPADSGAYILRVKLDHAPTADVFGLSAFVYD 166 (413)
T ss_pred eEEEeCCCCcccceeEEEEEEeCCCccCceeEEEEEEec
Confidence 46899999999999999999865443 34444445543
No 441
>PHA03289 envelope glycoprotein I; Provisional
Probab=30.32 E-value=1.4e+02 Score=23.89 Aligned_cols=25 Identities=28% Similarity=0.352 Sum_probs=21.3
Q ss_pred EEEEeecccCCCeeEEEEEEcCCCc
Q psy3045 69 TLIIKEAKVEDSGKYLCVVNNSVGG 93 (267)
Q Consensus 69 ~l~i~~~~~~d~G~Y~C~~~~~~~~ 93 (267)
-|.|.+...+|+|.|.-.++-....
T Consensus 123 LL~I~~Pr~~DSGiYyLRV~Ldga~ 147 (352)
T PHA03289 123 LLTIIEPRMSDTGIYYIRVSLAGRN 147 (352)
T ss_pred EEEeCCCCcccCeeEEEEEEeCCCc
Confidence 6899999999999999999865443
No 442
>PF06214 SLAM: Signaling lymphocytic activation molecule (SLAM) protein; InterPro: IPR010407 This entry is found in several mammalian signalling lymphocytic activation molecule (SLAM) proteins. Optimal T cell activation and expansion require engagement of the TCR plus co-stimulatory signals delivered through accessory molecules. SLAM, a 70 kDa co-stimulatory molecule belonging to the Ig superfamily, is defined as a human cell surface molecule that mediates CD28-independent proliferation of human T cells and IFN-gamma production by human Th1 and Th2 clones []. SLAM has also been recognised as a receptor for Measles virus [].; GO: 0004872 receptor activity, 0046649 lymphocyte activation, 0009986 cell surface, 0016021 integral to membrane; PDB: 3ALX_D 3ALZ_B 3ALW_A.
Probab=29.25 E-value=71 Score=20.91 Aligned_cols=24 Identities=29% Similarity=0.371 Sum_probs=17.1
Q ss_pred EEeeEEEEeecccCCCeeEEEEEE
Q psy3045 65 QVSGTLIIKEAKVEDSGKYLCVVN 88 (267)
Q Consensus 65 ~~~~~l~i~~~~~~d~G~Y~C~~~ 88 (267)
..+-+|.|..-.++|+|+|.-...
T Consensus 100 lEnLsL~Il~SrkE~EGWYfmtlE 123 (126)
T PF06214_consen 100 LENLSLEILESRKEDEGWYFMTLE 123 (126)
T ss_dssp TTTTEEEETT--GGG-EEEEEEEE
T ss_pred cccceeehhccccccCceEEEEee
Confidence 345689999999999999987765
No 443
>PHA03282 envelope glycoprotein E; Provisional
Probab=27.79 E-value=61 Score=27.34 Aligned_cols=23 Identities=30% Similarity=0.561 Sum_probs=20.6
Q ss_pred eEEEEeecccCCCeeEEEEEEcC
Q psy3045 68 GTLIIKEAKVEDSGKYLCVVNNS 90 (267)
Q Consensus 68 ~~l~i~~~~~~d~G~Y~C~~~~~ 90 (267)
-.|.+.+...+++|.|.|.+..+
T Consensus 333 VdL~F~nAp~saSGLYVfVl~yN 355 (540)
T PHA03282 333 VNLQLRDASEASGGLYVCVVYVN 355 (540)
T ss_pred cceEecCCCcccCceEEEEEEEC
Confidence 37999999999999999999864
No 444
>PF05566 Pox_vIL-18BP: Orthopoxvirus interleukin 18 binding protein; InterPro: IPR008791 Interleukin-18 (IL-18) is a proinflammatory cytokine that plays a key role in the activation of natural killer and T helper 1 cell responses principally by inducing interferon-gamma (IFN-gamma). Several poxvirus genes encode proteins with sequence similarity to IL-18BPs. It has been shown that vaccinia, ectromelia and cowpox viruses secrete from infected cells a soluble IL-18BP (vIL-18BP) that may modulate the host antiviral response. The expression of vIL-18BPs by distinct poxvirus genera that cause local or general viral dissemination, or persistent or acute infections in the host, emphasises the importance of IL-18 in response to viral infections [].; PDB: 3F62_A.
Probab=27.48 E-value=1.8e+02 Score=18.98 Aligned_cols=35 Identities=14% Similarity=0.228 Sum_probs=22.1
Q ss_pred EeeEEEEeecccCCCeeEEEEEEcCCCccEEEEEE
Q psy3045 66 VSGTLIIKEAKVEDSGKYLCVVNNSVGGESVETVL 100 (267)
Q Consensus 66 ~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l 100 (267)
....|++.+...-+.-.++|......|.....+++
T Consensus 91 ~~kvL~vt~t~Kf~h~rfTCVL~t~DGvskk~iw~ 125 (126)
T PF05566_consen 91 LDKVLHVTDTEKFAHYRFTCVLTTIDGVSKKNIWL 125 (126)
T ss_dssp EEEEEEE--TTTTTTEEEEEEEEETTEEEEE----
T ss_pred hhheeeecchhhccceeEEEEEEcCCccccccccC
Confidence 34467777777777788999999888766555543
No 445
>smart00089 PKD Repeats in polycystic kidney disease 1 (PKD1) and other proteins. Polycystic kidney disease 1 protein contains 14 repeats, present elsewhere such as in microbial collagenases.
Probab=27.21 E-value=1.4e+02 Score=17.59 Aligned_cols=61 Identities=16% Similarity=0.246 Sum_probs=33.2
Q ss_pred cCCCEEEEeEeCC-CCCceEEEEECCccCCCCCCCeEEeccCCCCCCeEEEEE--EEcCCCCceEEEEE
Q psy3045 148 FGRPAQFTCKYEG-NPVKTISWMKDGKPVPDHNEPVFRIDSVRKEDKGMYQCV--IRNEQESAQASGEL 213 (267)
Q Consensus 148 ~g~~v~l~C~~~~-~p~~~~~W~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~--~~~~~~~~~~~~~l 213 (267)
.+..+.+.....+ .....+.|.+++........ . ...-...|.|.-. +.+..+.......+
T Consensus 13 ~~~~v~f~~~~~~~~~~~~~~W~fgdg~~~~~~~--~---~~~y~~~G~y~v~l~v~n~~g~~~~~~~i 76 (79)
T smart00089 13 AGESVTFTATSSDDGSIVSYTWDFGDGTSSTGPT--V---THTYTKPGTYTVTLTVTNAVGSASATVTV 76 (79)
T ss_pred CCCEEEEEEECCCCCCeEEEEEEeCCCCccCCCC--E---EEEeCCCcEEEEEEEEEcCCCcEEEEEEE
Confidence 5777888877654 34568889875543222211 1 2233467888755 45655533333333
No 446
>PF15418 DUF4625: Domain of unknown function (DUF4625)
Probab=26.83 E-value=2.1e+02 Score=19.53 Aligned_cols=33 Identities=6% Similarity=0.001 Sum_probs=26.1
Q ss_pred cccCCCcccCC----CCceeEEecCCCeEEEEEEecc
Q psy3045 9 VGFKAPTFSSV----SDIIRFKKPGGESFALLCEAQE 41 (267)
Q Consensus 9 ~~~~~P~~~~~----~~~~~~~v~~g~~v~l~C~~~~ 41 (267)
....+|.|... .+.....+..|+.+.|.|.+..
T Consensus 10 ~D~~~P~I~~~~~~~~p~~~~~~~~G~~ihfe~~i~d 46 (132)
T PF15418_consen 10 KDTEKPVITLNEIGAFPENCKVATRGDDIHFEADISD 46 (132)
T ss_pred cccCCCEEEeeecccCCCCCeEEecCCcEEEEEEEEc
Confidence 45667877776 3336788999999999999988
No 447
>KOG0200|consensus
Probab=26.21 E-value=4.8e+02 Score=23.37 Aligned_cols=24 Identities=38% Similarity=0.499 Sum_probs=20.7
Q ss_pred EeeEEEEeecccCCCeeEEEEEEc
Q psy3045 66 VSGTLIIKEAKVEDSGKYLCVVNN 89 (267)
Q Consensus 66 ~~~~l~i~~~~~~d~G~Y~C~~~~ 89 (267)
....+.+..+...|.|.|+|.+.+
T Consensus 11 ~~~~~~~~~~~~~~~~~y~~~~~~ 34 (609)
T KOG0200|consen 11 NHWFLIIDSVVPGDKGFYTCLVSN 34 (609)
T ss_pred ccceEEEEEEEecCCccEEEEEec
Confidence 345788888899999999999988
No 448
>PHA03291 envelope glycoprotein I; Provisional
Probab=22.45 E-value=2.3e+02 Score=23.13 Aligned_cols=36 Identities=17% Similarity=0.002 Sum_probs=26.2
Q ss_pred eEEEEeecccCCCeeEEEEEEcCCCccEEEEEEEEE
Q psy3045 68 GTLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTVT 103 (267)
Q Consensus 68 ~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~V~ 103 (267)
--|.|.+...+|+|.|.-.++-.......-+.|.+.
T Consensus 129 vLL~i~~P~~~DsGiYvLRV~vdgat~adlF~lg~~ 164 (401)
T PHA03291 129 PLLRARGAARAVVGLYVLRVWVEGATNASLFPLGLA 164 (401)
T ss_pred eEEEecCCCcccceeEEEEEEeCCCcccceEEEeee
Confidence 368999999999999999998654444334444444
No 449
>PF13220 DUF4028: Protein of unknown function (DUF4028)
Probab=21.75 E-value=1.1e+02 Score=16.93 Aligned_cols=18 Identities=33% Similarity=0.722 Sum_probs=13.3
Q ss_pred cCCCeeEEEEEEcCCCcc
Q psy3045 77 VEDSGKYLCVVNNSVGGE 94 (267)
Q Consensus 77 ~~d~G~Y~C~~~~~~~~~ 94 (267)
...+..|.|.++|..|..
T Consensus 7 kdssnsflctvqnkng~~ 24 (65)
T PF13220_consen 7 KDSSNSFLCTVQNKNGDQ 24 (65)
T ss_pred ecCCCceEEEEecccHhH
Confidence 444567999999887753
No 450
>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein. gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.
Probab=20.59 E-value=92 Score=26.38 Aligned_cols=23 Identities=30% Similarity=0.306 Sum_probs=17.6
Q ss_pred eEEEEeecccCCCeeEEEEEEcC
Q psy3045 68 GTLIIKEAKVEDSGKYLCVVNNS 90 (267)
Q Consensus 68 ~~l~i~~~~~~d~G~Y~C~~~~~ 90 (267)
-.|.+.++...++|.|.|.+..+
T Consensus 269 ~~l~f~~a~~~~sGLYv~V~~~n 291 (439)
T PF02480_consen 269 VDLQFTNAPESASGLYVFVVYYN 291 (439)
T ss_dssp SSEEESS--GGG-EEEEEEEEET
T ss_pred cceEecCCCcccCceEEEEEEEC
Confidence 36999999999999999999864
Done!