RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy3045
(267 letters)
>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30,
N-terminal eight IG domains...; immunoglobulin domain;
HET: NAG NDG; 4.19A {Drosophila melanogaster}
Length = 816
Score = 224 bits (571), Expect = 4e-68
Identities = 151/266 (56%), Positives = 186/266 (69%), Gaps = 35/266 (13%)
Query: 7 KPVGFKAPTFSSVSDIIRFKKPGGESFALLCEAQ-----ENMWFKFIEGSSRKVAVPLND 61
+P+ P S++ G + ALLC AQ W+KFIEG++RK AV LND
Sbjct: 240 EPISSAVPKVVSLAKFDMKTYSGSSTMALLCPAQGYPVPVFRWYKFIEGTTRKQAVVLND 299
Query: 62 RVKQVSGTLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGR 121
RVKQVSGTLIIK+A VEDSGKYLCVVNNSVGGESVETVLTVTAP + +
Sbjct: 300 RVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAP------LSAK------ 347
Query: 122 PAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNEP 181
++P QT+DFGRPA FTC+Y GNP+KT+SWMKDGK + H+E
Sbjct: 348 -----------------IDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIG-HSES 389
Query: 182 VFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYF 241
V RI+SV+KEDKGMYQC +RN++ESA+AS ELKLGGRFDPPVI+++F +ET+ PGP+ +
Sbjct: 390 VLRIESVKKEDKGMYQCFVRNDRESAEASAELKLGGRFDPPVIRQAFQEETMEPGPSVFL 449
Query: 242 KCIASGNPTPEISWYLDGKKLVNAER 267
KC+A GNPTPEISW LDGKK+ N +R
Sbjct: 450 KCVAGGNPTPEISWELDGKKIANNDR 475
Score = 128 bits (322), Expect = 1e-33
Identities = 46/257 (17%), Positives = 80/257 (31%), Gaps = 56/257 (21%)
Query: 30 GESFALLCEAQEN-----MWFKFIEGSSRKVAVPLNDRVKQVS-GTLIIKEA-KVEDSGK 82
GE+ + C +W + + A+P+N + K GTLII+ + D
Sbjct: 541 GETLIVTCPVAGYPIDSIVWER--DN----RALPINRKQKVFPNGTLIIENVERNSDQAT 594
Query: 83 YLCVVNNSVGGESVETV-LTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEP 141
Y CV N G + ++ + V + P
Sbjct: 595 YTCVAKNQEGYSARGSLEVQV----------------------------MVLPRIIPFAF 626
Query: 142 TVQTIDFGRPAQFTCKYEGNPV-KTISWMKDGKPVPDHNEPVF----------RIDSVRK 190
G+ C G + I W DG+ + + I++V
Sbjct: 627 EEGPAQVGQYLTLHCSVPGGDLPLNIDWTLDGQAISEDLGITTSRVGRRGSVLTIEAVEA 686
Query: 191 EDKGMYQCVIRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPT 250
G + C RN Q + L + + PP +D+ G + +C A G P
Sbjct: 687 SHAGNFTCHARNLAGHQQFTTPLNV---YVPPRWILEPTDKAFAQGSDAKVECKADGFPK 743
Query: 251 PEISWYLDGKKLVNAER 267
P+++W +
Sbjct: 744 PQVTWKKAVGDTPGEYK 760
Score = 126 bits (318), Expect = 4e-33
Identities = 57/255 (22%), Positives = 86/255 (33%), Gaps = 49/255 (19%)
Query: 30 GESFALLCEAQEN-----MWFK---FIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSG 81
G S L C A N W I + R V L I D G
Sbjct: 444 GPSVFLKCVAGGNPTPEISWELDGKKIANNDRYQVGQYVTVNGDVVSYLNITSVHANDGG 503
Query: 82 KYLCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEP 141
Y C+ + VG L V P ++ +
Sbjct: 504 LYKCIAKSKVGVAEHSAKLNVYGL------PYIR------------------------QM 533
Query: 142 TVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVP-DHNEPVF-----RIDSV-RKEDKG 194
+ I G TC G P+ +I W +D + +P + + VF I++V R D+
Sbjct: 534 EKKAIVAGETLIVTCPVAGYPIDSIVWERDNRALPINRKQKVFPNGTLIIENVERNSDQA 593
Query: 195 MYQCVIRNEQ-ESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTP-E 252
Y CV +N++ SA+ S E+++ P +I +F + G C G P
Sbjct: 594 TYTCVAKNQEGYSARGSLEVQVMVL--PRIIPFAFEEGPAQVGQYLTLHCSVPGGDLPLN 651
Query: 253 ISWYLDGKKLVNAER 267
I W LDG+ +
Sbjct: 652 IDWTLDGQAISEDLG 666
Score = 111 bits (279), Expect = 6e-28
Identities = 46/284 (16%), Positives = 74/284 (26%), Gaps = 64/284 (22%)
Query: 12 KAPTFSSV-SDIIRFKKPGGESFALLCEAQEN-----MWFKFIEGSSRKVAVPLNDRVKQ 65
K P F ++ I F + C+A N +W + V R
Sbjct: 37 KGPVFLKEPTNRIDFSN--STGAEIECKASGNPMPEIIWIR---SDGTAVGDVPGLRQIS 91
Query: 66 VSGTLIIKEAKVED------SGKYLCVVNNSVGG-ESVETVLTVTAPLAAGVEPTVQTID 118
G L+ + ED + Y C+ N G S + + + + +
Sbjct: 92 SDGKLVFPPFRAEDYRQEVHAQVYACLARNQFGSIISRDVHVRAVVAQYYEADVNKEHVI 151
Query: 119 FGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDH 178
G A C P + + V+ +SW D +
Sbjct: 152 RGNSAVIKCL----IP----------------------SFVADFVEVVSWHTDEEENYFP 185
Query: 179 NEPVFR-----------IDSVRKED-KGMYQCVIRNE---QESAQASGELKL-----GGR 218
I V ED YQC ++ + A+ +
Sbjct: 186 GAEYDGKYLVLPSGELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSA 245
Query: 219 FDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKL 262
V F +T + C A G P P WY +
Sbjct: 246 VPKVVSLAKFDMKTYSGSSTMALLCPAQGYPVPVFRWYKFIEGT 289
Score = 97.3 bits (242), Expect = 4e-23
Identities = 37/205 (18%), Positives = 61/205 (29%), Gaps = 54/205 (26%)
Query: 30 GESFALLCEAQEN------MWFK---FIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDS 80
G+ L C W I RV + L I+ + +
Sbjct: 634 GQYLTLHCSVPGGDLPLNIDWTLDGQAISEDLG----ITTSRVGRRGSVLTIEAVEASHA 689
Query: 81 GKYLCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVE 140
G + C N G + T L V P P +E
Sbjct: 690 GNFTCHARNLAGHQQFTTPLNVYVP------PRWI-----------------------LE 720
Query: 141 PTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNEPVF------------RIDSV 188
PT + G A+ CK +G P ++W K P + + +D++
Sbjct: 721 PTDKAFAQGSDAKVECKADGFPKPQVTWKKAVGDTPGEYKDLKKSDNIRVEEGTLHVDNI 780
Query: 189 RKEDKGMYQCVIRNEQESAQASGEL 213
+K ++G Y C N S ++ +
Sbjct: 781 QKTNEGYYLCEAINGIGSGLSAVIM 805
Score = 95.8 bits (238), Expect = 2e-22
Identities = 33/211 (15%), Positives = 63/211 (29%), Gaps = 45/211 (21%)
Query: 70 LIIKEAKVEDSGKYLCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKY 129
+ + +++ + V + G ++ L P A P
Sbjct: 1 MNMPNERLKWLMLFAAVALIACGSQT----LAANPPDADQKGPVF--------------- 41
Query: 130 EISPPLAAGVEPTVQTIDFGRPAQFTCKYEGNPVKTISWMK-DGKPVPDHNE-------- 180
+ P A+ CK GNP+ I W++ DG V D
Sbjct: 42 -LKEP------TNRIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGDVPGLRQISSDG 94
Query: 181 -----PVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLGGRFDPPVIKESFSDETLNP 235
P D ++ +Y C+ RN+ S + + + E +
Sbjct: 95 KLVFPPFRAEDYRQEVHAQVYACLARNQFGSIISRDVHVRAVV--AQYYEADVNKEHVIR 152
Query: 236 GPNYYFKCIA---SGNPTPEISWYLDGKKLV 263
G + KC+ + +SW+ D ++
Sbjct: 153 GNSAVIKCLIPSFVADFVEVVSWHTDEEENY 183
Score = 71.1 bits (174), Expect = 4e-14
Identities = 17/84 (20%), Positives = 28/84 (33%)
Query: 184 RIDSVRKEDKGMYQCVIRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKC 243
+ + R + ++ V S + + P +KE + + +C
Sbjct: 2 NMPNERLKWLMLFAAVALIACGSQTLAANPPDADQKGPVFLKEPTNRIDFSNSTGAEIEC 61
Query: 244 IASGNPTPEISWYLDGKKLVNAER 267
ASGNP PEI W V
Sbjct: 62 KASGNPMPEIIWIRSDGTAVGDVP 85
Score = 56.1 bits (135), Expect = 4e-09
Identities = 19/83 (22%), Positives = 33/83 (39%), Gaps = 7/83 (8%)
Query: 30 GESFALLCEAQEN-----MWFK-FIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKY 83
G + C+A W K + + +D ++ GTL + + + G Y
Sbjct: 729 GSDAKVECKADGFPKPQVTWKKAVGDTPGEYKDLKKSDNIRVEEGTLHVDNIQKTNEGYY 788
Query: 84 LCVVNNSVG-GESVETVLTVTAP 105
LC N +G G S +++V A
Sbjct: 789 LCEAINGIGSGLSAVIMISVQAH 811
>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM;
2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4
PDB: 1ie5_A
Length = 291
Score = 165 bits (419), Expect = 5e-50
Identities = 61/258 (23%), Positives = 94/258 (36%), Gaps = 52/258 (20%)
Query: 30 GESFALLCEAQEN------MWFKF----IEGSSRKVAVPLNDRVKQVSGTLIIKEAKVED 79
GES LC+ + WF + + ++++V ND S TL I A ++D
Sbjct: 17 GESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWND---DDSSTLTIYNANIDD 73
Query: 80 SGKYLCVVNNSVGGESVETV-LTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAG 138
+G Y CVV G +S TV + + L F
Sbjct: 74 AGIYKCVVTAEDGTQSEATVNVKIFQKL-----------------MFK------------ 104
Query: 139 VEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNEP--------VFRIDSVRK 190
PT Q G A C + TI W G+ V + +I ++K
Sbjct: 105 NAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQIRGIKK 164
Query: 191 EDKGMYQCVIRNEQESAQASGELKLGGRFDP-PVIKESFSDETLNPGPNYYFKCIASGNP 249
D+G Y+C R ++++ P ++S + T N G + C A G P
Sbjct: 165 TDEGTYRCEGRILARGEINFKDIQVIVNVPPTVQARQSIVNATANLGQSVTLVCDADGFP 224
Query: 250 TPEISWYLDGKKLVNAER 267
P +SW DG+ + N E
Sbjct: 225 EPTMSWTKDGEPIENEEE 242
Score = 99 bits (249), Expect = 4e-25
Identities = 28/143 (19%), Positives = 58/143 (40%), Gaps = 17/143 (11%)
Query: 139 VEPTVQTIDFGRPAQFTCKYEGNP-VKTISWMK-DGKPVPDHNEPV-----------FRI 185
+ P+ I G F C+ G+ K ISW +G+ + + + + I
Sbjct: 7 IVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTI 66
Query: 186 DSVRKEDKGMYQCVIRNEQ-ESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCI 244
+ +D G+Y+CV+ E ++A+ +K+ F + K + + + G + C
Sbjct: 67 YNANIDDAGIYKCVVTAEDGTQSEATVNVKI---FQKLMFKNAPTPQEFKEGEDAVIVCD 123
Query: 245 ASGNPTPEISWYLDGKKLVNAER 267
+ P I W G+ ++ +
Sbjct: 124 VVSSLPPTIIWKHKGRDVILKKD 146
Score = 99.2 bits (247), Expect = 8e-25
Identities = 47/218 (21%), Positives = 74/218 (33%), Gaps = 48/218 (22%)
Query: 13 APTFSSVSDIIRFKKPGGESFALLCEAQEN-----MWFKFIEGSSRKVAVPLNDRVKQVS 67
F + FK+ GE ++C+ + +W +G R V + + R +S
Sbjct: 100 KLMFKNAPTPQEFKE--GEDAVIVCDVVSSLPPTIIWKH--KG--RDVILKKDVRFIVLS 153
Query: 68 -GTLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFT 126
L I+ K D G Y C GE + V
Sbjct: 154 NNYLQIRGIKKTDEGTYRCEGRILARGEINFKDIQVIV---------------------- 191
Query: 127 CKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNEPVFR-- 184
+ P + A T + G+ C +G P T+SW KDG+P+ + E +
Sbjct: 192 ---NVPPTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHI 248
Query: 185 ---------IDSVRKEDKGMYQCVIRNEQESAQASGEL 213
I +V K D+ Y C+ N+ AS L
Sbjct: 249 FSDDSSELTIRNVDKNDEAEYVCIAENKAGEQDASIHL 286
Score = 50.6 bits (121), Expect = 1e-07
Identities = 23/100 (23%), Positives = 33/100 (33%), Gaps = 11/100 (11%)
Query: 13 APTFSSVSDIIRFKKPGGESFALLCEAQ-----ENMWFK---FIEGSSRKVAVPLNDRVK 64
PT + I+ G+S L+C+A W K IE
Sbjct: 194 PPTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEEE---DDEKHIFS 250
Query: 65 QVSGTLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTVTA 104
S L I+ D +Y+C+ N G + L V A
Sbjct: 251 DDSSELTIRNVDKNDEAEYVCIAENKAGEQDASIHLKVFA 290
Score = 31.8 bits (72), Expect = 0.19
Identities = 8/47 (17%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
Query: 222 PVIKESFSDETLNPGPNYYFKCIASGNPT-PEISWYLDGKKLVNAER 267
+ S ++ G + +F C +G+ +ISW+ + ++ +
Sbjct: 3 LQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQ 49
>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL
structural protein; 3.30A {Oryctolagus cuniculus}
Length = 570
Score = 171 bits (435), Expect = 7e-50
Identities = 55/252 (21%), Positives = 84/252 (33%), Gaps = 42/252 (16%)
Query: 30 GESFALLCEAQEN-----MWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYL 84
GE L C+ W+K E + + A + K +L+I + D G+Y
Sbjct: 20 GEPITLQCKVDGTPEIRIAWYK--EHTKLRSAPAYKMQFKNNVASLVINKVDHSDVGEYT 77
Query: 85 CVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQ 144
C NSVG + VL + P F +
Sbjct: 78 CKAENSVGAVASSAVLVIKER--------------KLPPSFA------------RKLKDV 111
Query: 145 TIDFGRPAQFTCKYEGNPVKTISWMKDGKPVP---------DHNEPVFRIDSVRKEDKGM 195
G P F C+ G+ +SW KDG+ + HN +I + G
Sbjct: 112 HETLGFPVAFECRINGSEPLQVSWYKDGELLKDDANLQTSFIHNVATLQILQTDQSHVGQ 171
Query: 196 YQCVIRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISW 255
Y C N +A +S +L L PP L G + FKC +G +I+W
Sbjct: 172 YNCSASNPLGTASSSAKLTLSEHEVPPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITW 231
Query: 256 YLDGKKLVNAER 267
D +++
Sbjct: 232 AKDNREIRPGGN 243
Score = 137 bits (346), Expect = 3e-37
Identities = 45/257 (17%), Positives = 79/257 (30%), Gaps = 54/257 (21%)
Query: 30 GESFALLCEAQEN-----MWFKFIEGSSRKVAVPLNDRVK----QVSGTLIIKEAKVEDS 80
G A C + W+K + + ++ TL I +
Sbjct: 116 GFPVAFECRINGSEPLQVSWYK------DGELLKDDANLQTSFIHNVATLQILQTDQSHV 169
Query: 81 GKYLCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVE 140
G+Y C +N +G S LT++ P F ++
Sbjct: 170 GQYNCSASNPLGTASSSAKLTLSEH--------------EVPPFFD------------LK 203
Query: 141 PTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVP---------DHNEPVFRIDSVRKE 191
P + G F C G I+W KD + + N + V K
Sbjct: 204 PVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKG 263
Query: 192 DKGMYQCVIRNEQESAQASGELKLGGRFDPPVIKESFSD-ETLNPGPNYYFKCIASGNPT 250
D G Y C N S +L + +PP + + + ++C G+P
Sbjct: 264 DAGQYTCYASNVAGKDSCSAQLGV---QEPPRFIKKLEPSRIVKQDEHTRYECKIGGSPE 320
Query: 251 PEISWYLDGKKLVNAER 267
++ WY D ++ + +
Sbjct: 321 IKVLWYKDETEIQESSK 337
Score = 136 bits (344), Expect = 6e-37
Identities = 50/256 (19%), Positives = 89/256 (34%), Gaps = 55/256 (21%)
Query: 30 GESFALLCEAQEN-----MWFKFIEGSSRKVAVPLNDRVK----QVSGTLIIKEAKVEDS 80
GES C W K + + K + + TL + + D+
Sbjct: 212 GESGTFKCHVTGTAPIKITWAK--DN----REIRPGGNYKMTLVENTATLTVLKVTKGDA 265
Query: 81 GKYLCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVE 140
G+Y C +N G +S L V P P I
Sbjct: 266 GQYTCYASNVAGKDSCSAQLGVQEP------PRF----------------IKKL------ 297
Query: 141 PTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNEPVFR---------IDSVRKE 191
+ + ++ CK G+P + W KD + + ++ + ++ E
Sbjct: 298 EPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVE 357
Query: 192 DKGMYQCVIRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTP 251
D G Y C N SA +S LK+ +PPV ++ G + + +C G P
Sbjct: 358 DSGDYTCEAHNAAGSASSSTSLKV---KEPPVFRKKPHPVETLKGADVHLECELQGTPPF 414
Query: 252 EISWYLDGKKLVNAER 267
++SW+ D ++L + ++
Sbjct: 415 QVSWHKDKRELRSGKK 430
Score = 136 bits (343), Expect = 9e-37
Identities = 49/248 (19%), Positives = 79/248 (31%), Gaps = 48/248 (19%)
Query: 30 GESFALLCEAQENM-----WFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYL 84
E C+ + W+K + + + + + L + VEDSG Y
Sbjct: 306 DEHTRYECKIGGSPEIKVLWYK--DETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYT 363
Query: 85 CVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQ 144
C +N+ G S T L V P P + +P
Sbjct: 364 CEAHNAAGSASSSTSLKVKEP------PVFR-----------------------KKPHPV 394
Query: 145 TIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNEPVF---------RIDSVRKEDKGM 195
G C+ +G P +SW KD + + + I +V D G
Sbjct: 395 ETLKGADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMSENFLTSIHILNVDSADIGE 454
Query: 196 YQCVIRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISW 255
YQC N+ S G + L PP + SD + G + G ++W
Sbjct: 455 YQCKASNDVGSDTCVGSITL---KAPPRFVKKLSDISTVVGEEVQLQATIEGAEPISVAW 511
Query: 256 YLDGKKLV 263
+ D ++V
Sbjct: 512 FKDKGEIV 519
Score = 96.0 bits (239), Expect = 1e-22
Identities = 35/203 (17%), Positives = 64/203 (31%), Gaps = 54/203 (26%)
Query: 30 GESFALLCEAQ-----ENMWFKFIEGSSRKVAVPLNDRVKQVS----GTLIIKEAKVEDS 80
G L CE Q + W K + + + K +S ++ I D
Sbjct: 399 GADVHLECELQGTPPFQVSWHK--DKRE----LRSGKKYKIMSENFLTSIHILNVDSADI 452
Query: 81 GKYLCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVE 140
G+Y C +N VG ++ +T+ AP +F +
Sbjct: 453 GEYQCKASNDVGSDTCVGSITLKAP-----------------PRFV------------KK 483
Query: 141 PTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNEPVFR----------IDSVRK 190
+ + G Q EG +++W KD + ++ ++
Sbjct: 484 LSDISTVVGEEVQLQATIEGAEPISVAWFKDKGEIVRESDNIWISYSENIATLQFSRAEP 543
Query: 191 EDKGMYQCVIRNEQESAQASGEL 213
+ G Y C I+NE + + L
Sbjct: 544 ANAGKYTCQIKNEAGTQECFATL 566
Score = 60.2 bits (146), Expect = 1e-10
Identities = 14/51 (27%), Positives = 19/51 (37%)
Query: 217 GRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNAER 267
G +PP E G +C G P I+WY + KL +A
Sbjct: 1 GAMEPPYFIEPLEHVEAAIGEPITLQCKVDGTPEIRIAWYKEHTKLRSAPA 51
Score = 51.0 bits (122), Expect = 2e-07
Identities = 19/81 (23%), Positives = 31/81 (38%), Gaps = 12/81 (14%)
Query: 30 GESFALLCEAQEN-----MWFK---FIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSG 81
GE L + WFK I S + + ++ + TL A+ ++G
Sbjct: 492 GEEVQLQATIEGAEPISVAWFKDKGEIVRESDNIWISYSENI----ATLQFSRAEPANAG 547
Query: 82 KYLCVVNNSVGGESVETVLTV 102
KY C + N G + L+V
Sbjct: 548 KYTCQIKNEAGTQECFATLSV 568
>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta
trefoil, IG domain, growth factor/growth factor receptor
complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 334
Score = 160 bits (405), Expect = 1e-47
Identities = 50/248 (20%), Positives = 85/248 (34%), Gaps = 34/248 (13%)
Query: 30 GESFALLCEAQEN------MWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKY 83
G++ L C +W K + ++RV L + A EDSG Y
Sbjct: 23 GDAVELSCPPPGGGPMGPTVWVK------DGTGLVPSERVLVGPQRLQVLNASHEDSGAY 76
Query: 84 LCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPL---AAGVE 140
C + +V AP + E G + P ++
Sbjct: 77 SCRQRLTQRVLCHFSVRVTDAPSSGDDED-------GEDEAEDTGVDTGAPYWTRPERMD 129
Query: 141 PTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNEP----------VFRIDSVRK 190
+ + +F C GNP +ISW+K+G+ + ++SV
Sbjct: 130 KKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVP 189
Query: 191 EDKGMYQCVIRNEQESAQASGELKLGGRFD--PPVIKESFSDETLNPGPNYYFKCIASGN 248
D+G Y CV+ N+ S + + L + R P + +++T G + F C +
Sbjct: 190 SDRGNYTCVVENKFGSIRQTYTLDVLERSPHRPILQAGLPANQTAVLGSDVEFHCKVYSD 249
Query: 249 PTPEISWY 256
P I W
Sbjct: 250 AQPHIQWL 257
Score = 94.3 bits (234), Expect = 1e-22
Identities = 34/176 (19%), Positives = 53/176 (30%), Gaps = 36/176 (20%)
Query: 120 GRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYE-GNPVKTISWMKDGKPVPD- 177
GR A+ P + G + +C G P+ W+KDG +
Sbjct: 2 GRAAE--------VPGPEPGQQEQLVFGSGDAVELSCPPPGGGPMGPTVWVKDGTGLVPS 53
Query: 178 ----HNEPVFRIDSVRKEDKGMYQCVIRN-------------------EQESAQASGELK 214
++ + ED G Y C R + E + E
Sbjct: 54 ERVLVGPQRLQVLNASHEDSGAYSCRQRLTQRVLCHFSVRVTDAPSSGDDEDGEDEAEDT 113
Query: 215 LGGRFDPPVIKESF---SDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNAER 267
P + + F+C A+GNPTP ISW +G++ R
Sbjct: 114 GVDTGAPYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHR 169
Score = 88.9 bits (220), Expect = 1e-20
Identities = 43/233 (18%), Positives = 63/233 (27%), Gaps = 61/233 (26%)
Query: 11 FKAPTFSSVSDIIRFKKPGGESFALLCEAQEN-----MWFK---FIEGSSRKVAVPLNDR 62
+ P + P + C A N W K G R + +
Sbjct: 122 WTRPERMDKKLLAV---PAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGI----K 174
Query: 63 VKQVSGTLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRP 122
++ +L+++ D G Y CVV N G L V
Sbjct: 175 LRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLER----------------- 217
Query: 123 AQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEGNPVKTISWMK----DGKPVPDH 178
P+ P QT G +F CK + I W+K +G V
Sbjct: 218 -------SPHRPILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPD 270
Query: 179 NEPVF------------------RIDSVRKEDKGMYQCVIRNEQESAQASGEL 213
P + +V ED G Y C+ N + S L
Sbjct: 271 GTPYVTVLKTAGANTTDKELEVLSLHNVTFEDAGEYTCLAGNSIGFSHHSAWL 323
Score = 50.0 bits (119), Expect = 2e-07
Identities = 19/92 (20%), Positives = 29/92 (31%), Gaps = 16/92 (17%)
Query: 30 GESFALLCEAQEN-----MWFKFIEGSSRKVAVPLNDRVKQVS-----------GTLIIK 73
G C+ + W K +E + KV V + L +
Sbjct: 237 GSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKTAGANTTDKELEVLSLH 296
Query: 74 EAKVEDSGKYLCVVNNSVGGESVETVLTVTAP 105
ED+G+Y C+ NS+G L V
Sbjct: 297 NVTFEDAGEYTCLAGNSIGFSHHSAWLVVLPA 328
>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion,
membrane, development protein; HET: NAG; 1.95A
{Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A*
Length = 388
Score = 158 bits (401), Expect = 2e-46
Identities = 112/192 (58%), Positives = 131/192 (68%), Gaps = 35/192 (18%)
Query: 30 GESFALLCEAQEN-----MWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYL 84
+ +LLC AQ W+KFIEG++RK AV LNDRVKQVSGTLIIK+A VEDSGKYL
Sbjct: 227 AHTISLLCPAQGFPAPSFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYL 286
Query: 85 CVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQ 144
CVVNNSVGGESVETVLTVTAPL ++P Q
Sbjct: 287 CVVNNSVGGESVETVLTVTAPL-----------------SAK------------IDPPTQ 317
Query: 145 TIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNEPVFRIDSVRKEDKGMYQCVIRNEQ 204
T+DFGRPA FTC+Y GNP+KT+SWMKDGK + V RI+SV+KEDKGMYQC +RN++
Sbjct: 318 TVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGHSES-VLRIESVKKEDKGMYQCFVRNDR 376
Query: 205 ESAQASGELKLG 216
ESA+AS ELKLG
Sbjct: 377 ESAEASAELKLG 388
Score = 133 bits (335), Expect = 1e-36
Identities = 53/259 (20%), Positives = 78/259 (30%), Gaps = 44/259 (16%)
Query: 30 GESFALLCEAQENM--------WFKFIEGSSRKVAVPLNDRVKQV-SGTLIIKEAKVEDS 80
G S + C + W E + + + + SG L I+E ED
Sbjct: 118 GNSAVIKCLIPSFVADFVEVVSWHT-DEEENYFPGAEYDGKYLVLPSGELHIREVGPEDG 176
Query: 81 -GKYLCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGV 139
Y C + + GE T L+ T EP S P +
Sbjct: 177 YKSYQCRTKHRLTGE---TRLSATKGRLVITEPI----------------SSSAPRTPAL 217
Query: 140 EPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNEPVF-----------RIDSV 188
+ C +G P + W K + V I
Sbjct: 218 VQKPLELMVAHTISLLCPAQGFPAPSFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDA 277
Query: 189 RKEDKGMYQCVIRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGN 248
ED G Y CV+ N L + P K +T++ G F C +GN
Sbjct: 278 VVEDSGKYLCVVNNSVGGESVETVLTV---TAPLSAKIDPPTQTVDFGRPAVFTCQYTGN 334
Query: 249 PTPEISWYLDGKKLVNAER 267
P +SW DGK + ++E
Sbjct: 335 PIKTVSWMKDGKAIGHSES 353
Score = 102 bits (256), Expect = 2e-25
Identities = 47/285 (16%), Positives = 74/285 (25%), Gaps = 67/285 (23%)
Query: 12 KAPTFSSV-SDIIRFKKPGGESFALLCEAQEN-----MWFKFIEGSSRKVAVPLNDRVKQ 65
K P F ++ I F + C+A N +W + S AV ++Q
Sbjct: 2 KGPVFLKEPTNRIDFSN--STGAEIECKASGNPMPEIIWIR-----SDGTAVGDVPGLRQ 54
Query: 66 V--SGTLIIKEAKVED------SGKYLCVVNNSVGG-ESVETVLTVTAPLAAGVEPTVQT 116
+ G L+ + ED + Y C+ N G S + + + +
Sbjct: 55 ISSDGKLVFPPFRAEDYRQEVHAQVYACLARNQFGSIISRDVHVRAVVAQYYEADVNKEH 114
Query: 117 IDFGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVP 176
+ G A C P + + V+ +SW D +
Sbjct: 115 VIRGNSAVIKCL----IP----------------------SFVADFVEVVSWHTDEEENY 148
Query: 177 DHNEP-----------VFRIDSVRKED-KGMYQCVIRNEQ-ESAQASGELKL------GG 217
I V ED YQC ++ + S
Sbjct: 149 FPGAEYDGKYLVLPSGELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPIS 208
Query: 218 RFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKL 262
P L C A G P P WY +
Sbjct: 209 SSAPRTPALVQKPLELMVAHTISLLCPAQGFPAPSFRWYKFIEGT 253
Score = 71.9 bits (176), Expect = 1e-14
Identities = 30/143 (20%), Positives = 52/143 (36%), Gaps = 20/143 (13%)
Query: 139 VEPT-VQTIDFGRPAQFTCKYEGNPVKTISWMK-DGKPVPDHNE-------------PVF 183
EPT A+ CK GNP+ I W++ DG V D P
Sbjct: 8 KEPTNRIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGDVPGLRQISSDGKLVFPPFR 67
Query: 184 RIDSVRKEDKGMYQCVIRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKC 243
D ++ +Y C+ RN+ S S ++ + + + E + G + KC
Sbjct: 68 AEDYRQEVHAQVYACLARNQFGSI-ISRDVHVRAVV-AQYYEADVNKEHVIRGNSAVIKC 125
Query: 244 IA---SGNPTPEISWYLDGKKLV 263
+ + +SW+ D ++
Sbjct: 126 LIPSFVADFVEVVSWHTDEEENY 148
Score = 47.6 bits (113), Expect = 2e-06
Identities = 14/44 (31%), Positives = 18/44 (40%)
Query: 221 PPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVN 264
P +KE + + +C ASGNP PEI W V
Sbjct: 4 PVFLKEPTNRIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVG 47
>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG
B3P; 2.60A {Homo sapiens}
Length = 304
Score = 156 bits (395), Expect = 3e-46
Identities = 55/257 (21%), Positives = 86/257 (33%), Gaps = 45/257 (17%)
Query: 30 GESFALLCEAQEN-----MWFK---FIEGSSRKVAVPLNDRVKQVSGTLIIKEAKV-EDS 80
G + +C+A + W K + + L I+ + D
Sbjct: 21 GGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDES----AGAVLRIQPLRTPRDE 76
Query: 81 GKYLCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVE 140
Y CV NSVG +V LTV + G P +
Sbjct: 77 NVYECVAQNSVGEITVHAKLTVLRE---------DQLPSGFP-NID------------MG 114
Query: 141 PTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPV-PDHNEP--------VFRIDSVRKE 191
P ++ ++ R A C GNP I+W KD PV P + +I+S +
Sbjct: 115 PQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDPSASNGRIKQLRSGALQIESSEET 174
Query: 192 DKGMYQCVIRNEQ-ESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPT 250
D+G Y+CV N + L + + P + PG N C+A G+P
Sbjct: 175 DQGKYECVATNSAGVRYSSPANLYVRVQNVAPRFSILPMSHEIMPGGNVNITCVAVGSPM 234
Query: 251 PEISWYLDGKKLVNAER 267
P + W + L +
Sbjct: 235 PYVKWMQGAEDLTPEDD 251
Score = 104 bits (262), Expect = 7e-27
Identities = 37/144 (25%), Positives = 54/144 (37%), Gaps = 15/144 (10%)
Query: 139 VEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNEP----------VFRIDSV 188
EP Q G A F C+ G+P ++W K GK V V RI +
Sbjct: 11 KEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAGAVLRIQPL 70
Query: 189 R-KEDKGMYQCVIRNEQESAQASGEL----KLGGRFDPPVIKESFSDETLNPGPNYYFKC 243
R D+ +Y+CV +N +L + P I + + C
Sbjct: 71 RTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPSGFPNIDMGPQLKVVERTRTATMLC 130
Query: 244 IASGNPTPEISWYLDGKKLVNAER 267
ASGNP PEI+W+ D + +
Sbjct: 131 AASGNPDPEITWFKDFLPVDPSAS 154
Score = 101 bits (252), Expect = 2e-25
Identities = 42/194 (21%), Positives = 69/194 (35%), Gaps = 39/194 (20%)
Query: 30 GESFALLCEAQEN-----MWFKFIEGSSRKVAVPLNDRVKQV-SGTLIIKEAKVEDSGKY 83
+ +LC A N WFK + + N R+KQ+ SG L I+ ++ D GKY
Sbjct: 123 TRTATMLCAASGNPDPEITWFK--DFLPVDPS-ASNGRIKQLRSGALQIESSEETDQGKY 179
Query: 84 LCVVNNSVGG-ESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPT 142
CV NS G S L V +F+ + P
Sbjct: 180 ECVATNSAGVRYSSPANLYVRVQNV--------------APRFS------------ILPM 213
Query: 143 VQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNEPVF---RIDSVRKEDKGMYQCV 199
I G TC G+P+ + WM+ + + ++ ++ +D Y CV
Sbjct: 214 SHEIMPGGNVNITCVAVGSPMPYVKWMQGAEDLTPEDDMPVGRNVLELTDVKDSANYTCV 273
Query: 200 IRNEQESAQASGEL 213
+ +A ++
Sbjct: 274 AMSSLGVIEAVAQI 287
Score = 54.4 bits (131), Expect = 7e-09
Identities = 14/47 (29%), Positives = 22/47 (46%)
Query: 221 PPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNAER 267
PP + D+ G F C A+G+P P ++W GKK+ +
Sbjct: 6 PPRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRF 52
Score = 49.8 bits (119), Expect = 2e-07
Identities = 18/91 (19%), Positives = 33/91 (36%), Gaps = 13/91 (14%)
Query: 30 GESFALLCEAQEN-----MWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYL 84
G + + C A + W + + D + G +++ V+DS Y
Sbjct: 220 GGNVNITCVAVGSPMPYVKWMQ--GAE----DLTPEDDMP--VGRNVLELTDVKDSANYT 271
Query: 85 CVVNNSVGGESVETVLTVTAPLAAGVEPTVQ 115
CV +S+G +TV + AG +
Sbjct: 272 CVAMSSLGVIEAVAQITVKSLPKAGTKHHHH 302
>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane,
transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo
sapiens}
Length = 291
Score = 148 bits (374), Expect = 2e-43
Identities = 57/257 (22%), Positives = 90/257 (35%), Gaps = 54/257 (21%)
Query: 30 GESFALLCEAQEN----MWFKFIEGSSRKVAVPLNDRVKQ----VSGTLIIKEAKVEDSG 81
GES C A W+ + + RV V L I A +ED+G
Sbjct: 19 GESKFFTCTAIGEPESIDWYN-----PQGEKIISTQRVVVQKEGVRSRLTIYNANIEDAG 73
Query: 82 KYLCVVNNSVGG-ESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVE 140
Y C ++ G + VL + L F
Sbjct: 74 IYRCQATDAKGQTQEATVVLEIYQKL-----------------TFR------------EV 104
Query: 141 PTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNEPVFR--------IDSVRKED 192
+ Q G A+ C+ +P +SW+ + V ++ F I ++ K D
Sbjct: 105 VSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNNLQILNINKSD 164
Query: 193 KGMYQCVIRNEQESAQASGELKLGGRFDPPVIK--ESFSDETLNPGPNYYFKCIASGNPT 250
+G+Y+C R E ++ + PP I + + T G F C ASG+P
Sbjct: 165 EGIYRCEGRVEARGEIDFRDIIVIVNV-PPAISMPQKSFNATAERGEEMTFSCRASGSPE 223
Query: 251 PEISWYLDGKKLVNAER 267
P ISW+ +GK + E+
Sbjct: 224 PAISWFRNGKLIEENEK 240
Score = 104 bits (261), Expect = 8e-27
Identities = 39/229 (17%), Positives = 73/229 (31%), Gaps = 47/229 (20%)
Query: 11 FKAPTFSSVSDIIRFKKPGGESFALLCEAQEN-----MWFKFIEGSSRKVAVPLNDRVKQ 65
++ TF V FK+ GE ++C + W +V ++R
Sbjct: 96 YQKLTFREVVSPQEFKQ--GEDAEVVCRVSSSPAPAVSWLY--HN--EEVTTISDNRFAM 149
Query: 66 VS-GTLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQ 124
++ L I D G Y C GE + V
Sbjct: 150 LANNNLQILNINKSDEGIYRCEGRVEARGEIDFRDIIVIV-------------------- 189
Query: 125 FTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNEPVF- 183
+ P ++ + T + G F+C+ G+P ISW ++GK + ++ + +
Sbjct: 190 -----NVPPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILK 244
Query: 184 ------RIDSVRKEDKGMYQCVIRNEQESAQASGELKLGGRFDPPVIKE 226
+ ++ D G Y C N+ + L++ F
Sbjct: 245 GSNTELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQV---FVQHHHHH 290
Score = 104 bits (261), Expect = 9e-27
Identities = 25/139 (17%), Positives = 49/139 (35%), Gaps = 13/139 (9%)
Query: 139 VEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPV---------PDHNEPVFRIDSVR 189
+ + + G FTC G P + G+ + + I +
Sbjct: 9 ISLSKVELSVGESKFFTCTAIGEPESIDWYNPQGEKIISTQRVVVQKEGVRSRLTIYNAN 68
Query: 190 KEDKGMYQCVIRNEQESAQ-ASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGN 248
ED G+Y+C + + Q A+ L++ + +E S + G + C S +
Sbjct: 69 IEDAGIYRCQATDAKGQTQEATVVLEI---YQKLTFREVVSPQEFKQGEDAEVVCRVSSS 125
Query: 249 PTPEISWYLDGKKLVNAER 267
P P +SW +++
Sbjct: 126 PAPAVSWLYHNEEVTTISD 144
Score = 45.6 bits (108), Expect = 6e-06
Identities = 12/47 (25%), Positives = 22/47 (46%)
Query: 221 PPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNAER 267
+ S S L+ G + +F C A G P + G+K+++ +R
Sbjct: 4 LLQVTISLSKVELSVGESKFFTCTAIGEPESIDWYNPQGEKIISTQR 50
>2y25_A Myomesin; structural protein, sarcomere, M-BAND,
immunoglobulin-like D; 3.50A {Homo sapiens}
Length = 317
Score = 145 bits (368), Expect = 3e-42
Identities = 44/292 (15%), Positives = 88/292 (30%), Gaps = 63/292 (21%)
Query: 11 FKAPTFSSVSDIIRFKKPGGESFALLCEAQEN------MWFKFIEGSSRKVAVPLNDRVK 64
F P F + ++ G + L C+ +W+K + + ++++
Sbjct: 5 FTGPHFVEY---LSWEVTGECNVLLKCKVANIKKETHIVWYK--DE----REISVDEKHD 55
Query: 65 QVSG--TLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRP 122
G TL+I E +D+G Y ++ + G + L A +E +
Sbjct: 56 FKDGICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVDEAFKELMMEVCKKIALSATD 115
Query: 123 AQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPV------- 175
+ E G Y ++W +G +
Sbjct: 116 LKIQSTAE------------------GIQLYSFVTY-YVEDLKVNWSHNGSAIRYSDRVK 156
Query: 176 --PDHNEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELK------------------L 215
+ +I+ DKG Y + + + Q + +L +
Sbjct: 157 TGVTGEQIWLQINEPTPNDKGKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAI 216
Query: 216 GGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNAER 267
+ V+ T+ G C G+P PE+SW + K L + +
Sbjct: 217 AEKNRARVLGGLPDVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKALASDDH 268
Score = 106 bits (265), Expect = 3e-27
Identities = 43/185 (23%), Positives = 62/185 (33%), Gaps = 28/185 (15%)
Query: 44 WFKFIEGSSRKVAVPLNDRVKQVS----GTLIIKEAKVEDSGKYLCVVNNSVGGESVETV 99
W G A+ +DRVK L I E D GKY+ + + G
Sbjct: 142 WSH--NG----SAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTGHQKTVD 195
Query: 100 LTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYE 159
L+ A A E E + G P V TI G+ TC
Sbjct: 196 LSGQAYDEAYAEFQRLKQAA--------IAEKNRARVLGGLPDVVTIQEGKALNLTCNVW 247
Query: 160 GNPVKTISWMKDGKPVP----------DHNEPVFRIDSVRKEDKGMYQCVIRNEQESAQA 209
G+P +SW+K+ K + F I+ V D G Y V++N+ S +
Sbjct: 248 GDPPPEVSWLKNEKALASDDHCNLKFEAGRTAYFTINGVSTADSGKYGLVVKNKYGSETS 307
Query: 210 SGELK 214
+
Sbjct: 308 DFTVS 312
Score = 52.2 bits (125), Expect = 4e-08
Identities = 19/84 (22%), Positives = 27/84 (32%), Gaps = 12/84 (14%)
Query: 30 GESFALLCEAQEN-----MWFK---FIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSG 81
G++ L C + W K + R I DSG
Sbjct: 237 GKALNLTCNVWGDPPPEVSWLKNEKALASDDHCNLKFEAGRT----AYFTINGVSTADSG 292
Query: 82 KYLCVVNNSVGGESVETVLTVTAP 105
KY VV N G E+ + ++V P
Sbjct: 293 KYGLVVKNKYGSETSDFTVSVFIP 316
>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein;
1.60A {Oryctolagus cuniculus} PDB: 2rjm_A
Length = 284
Score = 142 bits (360), Expect = 3e-41
Identities = 51/256 (19%), Positives = 87/256 (33%), Gaps = 55/256 (21%)
Query: 30 GESFALLCEAQEN-----MWFKFIEGSSRKVAVPLNDRVKQV----SGTLIIKEAKVEDS 80
GES C W K + + K + TL + + D+
Sbjct: 20 GESGTFKCHVTGTAPIKITWAK--DN----REIRPGGNYKMTLVENTATLTVLKVTKGDA 73
Query: 81 GKYLCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVE 140
G+Y C +N G +S L V P P I
Sbjct: 74 GQYTCYASNVAGKDSCSAQLGVQEP------PRF----------------IKKL------ 105
Query: 141 PTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVP---------DHNEPVFRIDSVRKE 191
+ + ++ CK G+P + W KD + + V + ++ E
Sbjct: 106 EPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVE 165
Query: 192 DKGMYQCVIRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTP 251
D G Y C N SA +S LK+ +PPV ++ G + + +C G P
Sbjct: 166 DSGDYTCEAHNAAGSASSSTSLKV---KEPPVFRKKPHPVETLKGADVHLECELQGTPPF 222
Query: 252 EISWYLDGKKLVNAER 267
++SW+ D ++L + ++
Sbjct: 223 QVSWHKDKRELRSGKK 238
Score = 108 bits (271), Expect = 3e-28
Identities = 26/139 (18%), Positives = 48/139 (34%), Gaps = 13/139 (9%)
Query: 139 VEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNEPVFR---------IDSVR 189
++P + G F C G I+W KD + + + V
Sbjct: 10 LKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATLTVLKVT 69
Query: 190 KEDKGMYQCVIRNEQESAQASGELKLGGRFDPPVIKESFSD-ETLNPGPNYYFKCIASGN 248
K D G Y C N S +L + +PP + + + ++C G+
Sbjct: 70 KGDAGQYTCYASNVAGKDSCSAQLGV---QEPPRFIKKLEPSRIVKQDEHTRYECKIGGS 126
Query: 249 PTPEISWYLDGKKLVNAER 267
P ++ WY D ++ + +
Sbjct: 127 PEIKVLWYKDETEIQESSK 145
Score = 104 bits (262), Expect = 5e-27
Identities = 41/202 (20%), Positives = 63/202 (31%), Gaps = 53/202 (26%)
Query: 30 GESFALLCEAQEN-----MWFK----FIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDS 80
E C+ + +W+K E S +++ + L + VEDS
Sbjct: 114 DEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESV------AVLEMYNLSVEDS 167
Query: 81 GKYLCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVE 140
G Y C +N+ G S T L V P F +
Sbjct: 168 GDYTCEAHNAAGSASSSTSLKVKE-----------------PPVFR------------KK 198
Query: 141 PTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVP---------DHNEPVFRIDSVRKE 191
P G C+ +G P +SW KD + + ++ I +V
Sbjct: 199 PHPVETLKGADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMSENFLTSIHILNVDSA 258
Query: 192 DKGMYQCVIRNEQESAQASGEL 213
D G YQC N+ S G +
Sbjct: 259 DIGEYQCKASNDVGSYTCVGSI 280
Score = 52.4 bits (126), Expect = 3e-08
Identities = 12/51 (23%), Positives = 19/51 (37%)
Query: 217 GRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNAER 267
G PP L G + FKC +G +I+W D +++
Sbjct: 1 GAMAPPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGN 51
Score = 46.7 bits (111), Expect = 3e-06
Identities = 19/84 (22%), Positives = 30/84 (35%), Gaps = 15/84 (17%)
Query: 30 GESFALLCEAQEN-----MWFKFIEGSSRKVAVPLNDRVKQVSG----TLIIKEAKVEDS 80
G L CE Q W K + + + K +S ++ I D
Sbjct: 207 GADVHLECELQGTPPFQVSWHK--DKR----ELRSGKKYKIMSENFLTSIHILNVDSADI 260
Query: 81 GKYLCVVNNSVGGESVETVLTVTA 104
G+Y C +N VG + +T+ A
Sbjct: 261 GEYQCKASNDVGSYTCVGSITLKA 284
>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane,
glycoprotein, signal, complex (immunoglobulin/receptor);
2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB:
1ira_Y* 4dep_B* 1g0y_R
Length = 315
Score = 142 bits (358), Expect = 8e-41
Identities = 50/273 (18%), Positives = 76/273 (27%), Gaps = 48/273 (17%)
Query: 13 APTFSSVSDIIRFKKPGGESFALLCEAQEN------MWFKFIEGSSRKVAVPLNDRVKQV 66
A + I E C N W+K + S V+ R+ Q
Sbjct: 3 ADKCKEREEKIILVSSANEIDVRPCPLNPNEHKGTITWYK--DDSKTPVSTEQASRIHQH 60
Query: 67 SGTLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTVTAPLAAGVE----PTVQTIDFGRP 122
L AKVEDSG Y CVV NS ++ Q +
Sbjct: 61 KEKLWFVPAKVEDSGHYYCVVRNSSYCLRIKISAKFVENEPNLCYNAQAIFKQKLPVAGD 120
Query: 123 AQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHN--- 179
C P K E N + + W KD KP+ N
Sbjct: 121 GGLVC-----------------------PYMEFFKNENNELPKLQWYKDCKPLLLDNIHF 157
Query: 180 ---EPVFRIDSVRKEDKGMYQCVIRNEQESAQASG------ELKLGGRFDPPVIKESFSD 230
+ + +V ++ +G Y C Q + PVI ++
Sbjct: 158 SGVKDRLIVMNVAEKHRGNYTCHASYTYLGKQYPITRVIEFITLEENKPTRPVIVSPANE 217
Query: 231 E-TLNPGPNYYFKCIASGNPTPEISWYLDGKKL 262
++ G C +G + W +G +
Sbjct: 218 TMEVDLGSQIQLICNVTGQLSDIAYWKWNGSVI 250
Score = 85.5 bits (211), Expect = 1e-19
Identities = 27/178 (15%), Positives = 44/178 (24%), Gaps = 41/178 (23%)
Query: 60 NDRVKQVSGTLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDF 119
N V LI+ + G Y C + + G+ + +PT I
Sbjct: 154 NIHFSGVKDRLIVMNVAEKHRGNYTCHASYTYLGKQYPITRVIEFITLEENKPTRPVI-- 211
Query: 120 GRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHN 179
+SP +D G Q C G W +G + + +
Sbjct: 212 -----------VSPA------NETMEVDLGSQIQLICNVTGQLSDIAYWKWNGSVIDEDD 254
Query: 180 EP---------------------VFRIDSVRKED-KGMYQCVIRNEQESAQASGELKL 215
V I + K + C +N A +L
Sbjct: 255 PVLGEDYYSVENPANKRRSTLITVLNISEIESRFYKHPFTCFAKNTHGIDAAYIQLIY 312
Score = 43.2 bits (101), Expect = 4e-05
Identities = 15/89 (16%), Positives = 23/89 (25%), Gaps = 16/89 (17%)
Query: 30 GESFALLCEAQEN-----MWFK----------FIEGSSRKVAVPLNDRVKQVSGTLIIKE 74
G L+C W + V P N R + L I E
Sbjct: 224 GSQIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTLITVLNISE 283
Query: 75 AKVED-SGKYLCVVNNSVGGESVETVLTV 102
+ + C N+ G ++ L
Sbjct: 284 IESRFYKHPFTCFAKNTHGIDAAYIQLIY 312
>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin
superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus
norvegicus}
Length = 403
Score = 143 bits (363), Expect = 1e-40
Identities = 50/252 (19%), Positives = 86/252 (34%), Gaps = 43/252 (17%)
Query: 30 GESFALLCEAQEN-----MWFKFIEGSSRKVAVPLNDRVK-QVSGTLIIKEAKVEDSGKY 83
G++ L CE + W K +P + RV SG L I + DSG Y
Sbjct: 136 GDTVLLKCEVIGDPMPTIHWQK---NQQDLNPIPGDSRVVVLPSGALQISRLQPGDSGVY 192
Query: 84 LCVVNNSVGG-ESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPT 142
C N E + + + + P+
Sbjct: 193 RCSARNPASTRTGNEAEVRILSDPGLHRQLYFL-----------------------QRPS 229
Query: 143 VQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNEPVF-------RIDSVRKEDKGM 195
G+ A C G P + +W++ + + ++ I +V +D G
Sbjct: 230 NVIAIEGKDAVLECCVSGYPPPSFTWLRGEEVIQLRSKKYSLLGGSNLLISNVTDDDSGT 289
Query: 196 YQCVIRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISW 255
Y CV+ + E+ AS EL + PP S+ + F+C SG P P ++W
Sbjct: 290 YTCVVTYKNENISASAELTV---LVPPWFLNHPSNLYAYESMDIEFECAVSGKPVPTVNW 346
Query: 256 YLDGKKLVNAER 267
+G ++ ++
Sbjct: 347 MKNGDVVIPSDY 358
Score = 121 bits (305), Expect = 2e-32
Identities = 53/284 (18%), Positives = 94/284 (33%), Gaps = 60/284 (21%)
Query: 10 GFKAPTFSSV-SDIIRFKKPGGESFALLCEAQEN------MWFKFIEGSSRKVAVPLNDR 62
G ++ F S SD + + G + L C A+ + W K +A+ ++DR
Sbjct: 18 GRRSLHFVSEPSDAVTMR---GGNVLLNCSAESDRGVPVIKWKK----DGLILALGMDDR 70
Query: 63 VKQVS-GTLII-----KEAKVEDSGKYLCVVNNSVGGESVETVLTVTAPLAAGVEPTVQT 116
+Q+ G+L+I D G Y C + G + V
Sbjct: 71 KQQLPNGSLLIQNILHSRHHKPDEGLYQCEASLGDSGSIISRTAKVM------------- 117
Query: 117 IDFGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPV- 175
P +F + T G C+ G+P+ TI W K+ + +
Sbjct: 118 --VAGPLRFL------------SQTESITAFMGDTVLLKCEVIGDPMPTIHWQKNQQDLN 163
Query: 176 PDHNEPVFR--------IDSVRKEDKGMYQCVIRNEQ-ESAQASGELKL---GGRFDPPV 223
P + I ++ D G+Y+C RN E+++ G
Sbjct: 164 PIPGDSRVVVLPSGALQISRLQPGDSGVYRCSARNPASTRTGNEAEVRILSDPGLHRQLY 223
Query: 224 IKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNAER 267
+ S+ G + +C SG P P +W + + +
Sbjct: 224 FLQRPSNVIAIEGKDAVLECCVSGYPPPSFTWLRGEEVIQLRSK 267
Score = 110 bits (277), Expect = 2e-28
Identities = 47/196 (23%), Positives = 62/196 (31%), Gaps = 44/196 (22%)
Query: 30 GESFALLCEAQENM-----WFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYL 84
G+ L C W + + + L+I +DSG Y
Sbjct: 236 GKDAVLECCVSGYPPPSFTWLR----GEEVIQLRSKKYSLLGGSNLLISNVTDDDSGTYT 291
Query: 85 CVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQ 144
CVV S LTV P F P+
Sbjct: 292 CVVTYKNENISASAELTVLV-----------------PPWFL------------NHPSNL 322
Query: 145 TIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPD------HNEPVFRIDSVRKEDKGMYQC 198
+F C G PV T++WMK+G V RI V K D+G YQC
Sbjct: 323 YAYESMDIEFECAVSGKPVPTVNWMKNGDVVIPSDYFQIVGGSNLRILGVVKSDEGFYQC 382
Query: 199 VIRNEQESAQASGELK 214
V NE +AQ+S +L
Sbjct: 383 VAENEAGNAQSSAQLI 398
Score = 56.0 bits (135), Expect = 3e-09
Identities = 17/68 (25%), Positives = 19/68 (27%), Gaps = 2/68 (2%)
Query: 201 RNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGN-PTPEISWYLDG 259
R E + GGR SD G N C A + P I W DG
Sbjct: 2 RWGSELESSHHHHHHGGR-RSLHFVSEPSDAVTMRGGNVLLNCSAESDRGVPVIKWKKDG 60
Query: 260 KKLVNAER 267
L
Sbjct: 61 LILALGMD 68
Score = 55.2 bits (133), Expect = 5e-09
Identities = 19/82 (23%), Positives = 21/82 (25%), Gaps = 12/82 (14%)
Query: 30 GESFALLCEAQEN-----MWFKFIEGSSRKVAVPLNDRVKQVS-GTLIIKEAKVEDSGKY 83
C W K G V +D + V L I D G Y
Sbjct: 327 SMDIEFECAVSGKPVPTVNWMK--NG----DVVIPSDYFQIVGGSNLRILGVVKSDEGFY 380
Query: 84 LCVVNNSVGGESVETVLTVTAP 105
CV N G L V P
Sbjct: 381 QCVAENEAGNAQSSAQLIVPKP 402
>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker,
immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A
Length = 642
Score = 147 bits (372), Expect = 1e-40
Identities = 58/247 (23%), Positives = 83/247 (33%), Gaps = 52/247 (21%)
Query: 30 GESFALLCEAQEN-----MWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYL 84
GE+ L C A N WF N +Q + L I V +SG Y
Sbjct: 218 GENLNLSCHAASNPPAQYSWFV-------------NGTFQQSTQELFIPNITVNNSGSYT 264
Query: 85 CVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQ 144
C +NS G + TV T+T PP
Sbjct: 265 CQAHNSDTGLNRTTVTTITVYAE-------------------------PPKPFITSNNSN 299
Query: 145 TIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPD-------HNEPVFRIDSVRKEDKGMYQ 197
++ TC+ E T W + + +P ++ + SV + D G Y+
Sbjct: 300 PVEDEDAVALTCEPEIQNT-TYLWWVNNQSLPVSPRLQLSNDNRTLTLLSVTRNDVGPYE 358
Query: 198 CVIRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYL 257
C I+NE S S + L + P S S PG N C A+ NP + SW +
Sbjct: 359 CGIQNEL-SVDHSDPVILNVLYGPDDPTISPSYTYYRPGVNLSLSCHAASNPPAQYSWLI 417
Query: 258 DGKKLVN 264
DG +
Sbjct: 418 DGNIQQH 424
Score = 138 bits (350), Expect = 1e-37
Identities = 40/246 (16%), Positives = 73/246 (29%), Gaps = 45/246 (18%)
Query: 30 GESFALLCEAQEN----MWFKFIEGSSRKVAVPLNDRVKQV--SGTLIIKEAKVEDSGKY 83
++ A CE + +W+ ++P++ R++ + TL + D+ Y
Sbjct: 126 KDAVAFTCEPETQDATYLWWV------NNQSLPVSPRLQLSNGNRTLTLFNVTRNDTASY 179
Query: 84 LCVVNNSVGGESVETV-LTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPT 142
C N V ++V L V P T + P
Sbjct: 180 KCETQNPVSARRSDSVILNVLYG----------------PDAPT------------ISPL 211
Query: 143 VQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNEPVFRIDSVRKEDKGMYQCVIRN 202
+ G +C NP SW +G E I ++ + G Y C N
Sbjct: 212 NTSYRSGENLNLSCHAASNPPAQYSWFVNGTFQQSTQE--LFIPNITVNNSGSYTCQAHN 269
Query: 203 EQESAQASGELKLGGRFDPPVIK-ESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKK 261
+ + +PP S + + C T W+++ +
Sbjct: 270 SDTGLNRTTVTTITVYAEPPKPFITSNNSNPVEDEDAVALTCEPEIQNTT-YLWWVNNQS 328
Query: 262 LVNAER 267
L + R
Sbjct: 329 LPVSPR 334
Score = 138 bits (348), Expect = 2e-37
Identities = 44/259 (16%), Positives = 81/259 (31%), Gaps = 54/259 (20%)
Query: 30 GESFALLCEAQEN-----MWFK------------FIEGSSRKVAVPLNDRVKQV--SGTL 70
G+ LL W+K ++ G+ + P + + + +L
Sbjct: 14 GKEVLLLVHNLPQHLFGYSWYKGERVDGNRQIIGYVIGTQQATPGPAYSGREIIYPNASL 73
Query: 71 IIKEAKVEDSGKYLCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYE 130
+I+ D+G Y V S T P
Sbjct: 74 LIQNIIQNDTGFYTLHVIKSDLVNEEATGQFRVYPE------------------------ 109
Query: 131 ISPPLAAGVEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPD-------HNEPVF 183
P + + ++ FTC+ E T W + + +P +
Sbjct: 110 --LPKPSISSNNSKPVEDKDAVAFTCEPETQDA-TYLWWVNNQSLPVSPRLQLSNGNRTL 166
Query: 184 RIDSVRKEDKGMYQCVIRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKC 243
+ +V + D Y+C +N SA+ S + L + P S + + G N C
Sbjct: 167 TLFNVTRNDTASYKCETQNP-VSARRSDSVILNVLYGPDAPTISPLNTSYRSGENLNLSC 225
Query: 244 IASGNPTPEISWYLDGKKL 262
A+ NP + SW+++G
Sbjct: 226 HAASNPPAQYSWFVNGTFQ 244
Score = 136 bits (343), Expect = 1e-36
Identities = 53/247 (21%), Positives = 84/247 (34%), Gaps = 52/247 (21%)
Query: 30 GESFALLCEAQEN-----MWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYL 84
G + +L C A N W + ++Q + L I ++SG Y
Sbjct: 396 GVNLSLSCHAASNPPAQYSWLI-------------DGNIQQHTQELFISNITEKNSGLYT 442
Query: 85 CVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQ 144
C NNS G S TV T+T P + +
Sbjct: 443 CQANNSASGHSRTTVKTITVSAE-------------------------LPKPSISSNNSK 477
Query: 145 TIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNEPVF-------RIDSVRKEDKGMYQ 197
++ FTC+ E T W +G+ +P + +V + D Y
Sbjct: 478 PVEDKDAVAFTCEPEAQN-TTYLWWVNGQSLPVSPRLQLSNGNRTLTLFNVTRNDARAYV 536
Query: 198 CVIRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYL 257
C I+N SA S + L + P S D + G N C ++ NP+P+ SW +
Sbjct: 537 CGIQNSV-SANRSDPVTLDVLYGPDTPIISPPDSSYLSGANLNLSCHSASNPSPQYSWRI 595
Query: 258 DGKKLVN 264
+G +
Sbjct: 596 NGIPQQH 602
Score = 126 bits (317), Expect = 3e-33
Identities = 43/247 (17%), Positives = 79/247 (31%), Gaps = 45/247 (18%)
Query: 29 GGESFALLCEAQEN----MWFKFIEGSSRKVAVPLNDRVKQVS--GTLIIKEAKVEDSGK 82
++ AL CE + +W+ ++P++ R++ + TL + D G
Sbjct: 303 DEDAVALTCEPEIQNTTYLWWV------NNQSLPVSPRLQLSNDNRTLTLLSVTRNDVGP 356
Query: 83 YLCVVNNSVGGESVETV-LTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEP 141
Y C + N + + + V L V P T + P
Sbjct: 357 YECGIQNELSVDHSDPVILNVLYG----------------PDDPT------------ISP 388
Query: 142 TVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNEPVFRIDSVRKEDKGMYQCVIR 201
+ G +C NP SW+ DG E I ++ +++ G+Y C
Sbjct: 389 SYTYYRPGVNLSLSCHAASNPPAQYSWLIDGNIQQHTQE--LFISNITEKNSGLYTCQAN 446
Query: 202 NEQESAQASGELK-LGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGK 260
N + P S + + + F C T W+++G+
Sbjct: 447 NSASGHSRTTVKTITVSAELPKPSISSNNSKPVEDKDAVAFTCEPEAQNTT-YLWWVNGQ 505
Query: 261 KLVNAER 267
L + R
Sbjct: 506 SLPVSPR 512
Score = 103 bits (257), Expect = 5e-25
Identities = 37/193 (19%), Positives = 60/193 (31%), Gaps = 43/193 (22%)
Query: 28 PGGESFALLCEAQEN----MWFKFIEGSSRKVAVPLNDRVKQV--SGTLIIKEAKVEDSG 81
++ A CE + +W+ G S +P++ R++ + TL + D+
Sbjct: 480 EDKDAVAFTCEPEAQNTTYLWWV--NGQS----LPVSPRLQLSNGNRTLTLFNVTRNDAR 533
Query: 82 KYLCVVNNSVGGESVETV-LTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVE 140
Y+C + NSV + V L V P I
Sbjct: 534 AYVCGIQNSVSANRSDPVTLDVLYG------PDTPII----------------------S 565
Query: 141 PTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNEPVFRIDSVRKEDKGMYQCVI 200
P + G +C NP SW +G P + V I + + G Y C +
Sbjct: 566 PPDSSYLSGANLNLSCHSASNPSPQYSWRINGIPQ--QHTQVLFIAKITPNNNGTYACFV 623
Query: 201 RNEQESAQASGEL 213
N S
Sbjct: 624 SNLATGRNNSIVK 636
Score = 78.8 bits (194), Expect = 9e-17
Identities = 19/155 (12%), Positives = 44/155 (28%), Gaps = 28/155 (18%)
Query: 139 VEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNEPVFR-------------- 184
+E T + G+ + SW K + + +
Sbjct: 4 IESTPFNVAEGKEVLLLVHNLPQHLFGYSWYKGERVDGNRQIIGYVIGTQQATPGPAYSG 63
Query: 185 -----------IDSVRKEDKGMYQCVIRNEQ-ESAQASGELKLGGRFDPPVIKESFSDET 232
I ++ + D G Y + + +A+G+ ++ P S + +
Sbjct: 64 REIIYPNASLLIQNIIQNDTGFYTLHVIKSDLVNEEATGQFRVYPEL-PKPSISSNNSKP 122
Query: 233 LNPGPNYYFKCIASGNPTPEISWYLDGKKLVNAER 267
+ F C W+++ + L + R
Sbjct: 123 VEDKDAVAFTCEPETQD-ATYLWWVNNQSLPVSPR 156
Score = 58.0 bits (140), Expect = 8e-10
Identities = 17/81 (20%), Positives = 28/81 (34%), Gaps = 18/81 (22%)
Query: 30 GESFALLCEAQEN-----MWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYL 84
G + L C + N W N +Q + L I + ++G Y
Sbjct: 574 GANLNLSCHSASNPSPQYSWRI-------------NGIPQQHTQVLFIAKITPNNNGTYA 620
Query: 85 CVVNNSVGGESVETVLTVTAP 105
C V+N G + V ++T
Sbjct: 621 CFVSNLATGRNNSIVKSITVS 641
>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus
gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB:
2om5_A
Length = 382
Score = 138 bits (348), Expect = 1e-38
Identities = 52/249 (20%), Positives = 85/249 (34%), Gaps = 35/249 (14%)
Query: 30 GESFALLCEAQEN------MWFKFIEGSSRKVAVPLNDRVKQV--SGTLIIKEAKVEDSG 81
G C + W + +P + R +G L I + + D G
Sbjct: 116 GWGVMFTCSPPPHYPALSYRWLL----NEFPNFIPADGRRFVSQTTGNLYIAKTEASDLG 171
Query: 82 KYLCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEP 141
Y C + + + ++V + + L+ E Q P P
Sbjct: 172 NYSCFATSHIDFIT-KSVFSKFSQLSLAAEDARQ----------------YAPSIKAKFP 214
Query: 142 TVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDH---NEPVFRIDSVRKEDKGMYQC 198
G+ C GNPV I W K +EP+ I +V ED+G Y+C
Sbjct: 215 ADTYALTGQMVTLECFAFGNPVPQIKWRKLDGSQTSKWLSSEPLLHIQNVDFEDEGTYEC 274
Query: 199 VIRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLD 258
N + G + + P + +D + G + + C+ASG P P + W D
Sbjct: 275 EAENIKGRDTYQGRIII---HAQPDWLDVITDTEADIGSDLRWSCVASGKPRPAVRWLRD 331
Query: 259 GKKLVNAER 267
G+ L + R
Sbjct: 332 GQPLASQNR 340
Score = 130 bits (328), Expect = 1e-35
Identities = 42/195 (21%), Positives = 64/195 (32%), Gaps = 47/195 (24%)
Query: 30 GESFALLCEAQEN-----MWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYL 84
G+ L C A N W RK+ + L I+ ED G Y
Sbjct: 222 GQMVTLECFAFGNPVPQIKW--------RKLDGSQTSKWLSSEPLLHIQNVDFEDEGTYE 273
Query: 85 CVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQ 144
C N G ++ + + + A + T
Sbjct: 274 CEAENIKGRDTYQGRIIIHAQP-----------------DWL------------DVITDT 304
Query: 145 TIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDH-----NEPVFRIDSVRKEDKGMYQCV 199
D G +++C G P + W++DG+P+ + R + ED GMYQCV
Sbjct: 305 EADIGSDLRWSCVASGKPRPAVRWLRDGQPLASQNRIEVSGGELRFSKLVLEDSGMYQCV 364
Query: 200 IRNEQESAQASGELK 214
N+ + AS EL
Sbjct: 365 AENKHGTVYASAELT 379
Score = 125 bits (315), Expect = 7e-34
Identities = 55/276 (19%), Positives = 83/276 (30%), Gaps = 57/276 (20%)
Query: 13 APTFSSV-SDIIRFKKPGGESFALLCEAQEN-----MWFKFIEGSSRKVAVPLNDRVKQV 66
P F + + + E L C A+ N W G ++ + + R + V
Sbjct: 4 GPVFEEQPAHTLFPEGSAEEKVTLTCRARANPPATYRWKM--NG--TELKMGPDSRYRLV 59
Query: 67 SGTL-IIKEAKVEDSGKYLCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQF 125
+G L I K +D+G Y CV N+ G TV++ A L G
Sbjct: 60 AGDLVISNPVKAKDAGSYQCVATNARG-----TVVSREASLRFGFLQEFSA--------- 105
Query: 126 TCKYEISPPLAAGVEPTVQTIDFGRPAQFTCK-YEGNPVKTISWMKDGKPVP-DHNEPVF 183
E I G FTC P + W+ + P + F
Sbjct: 106 -------------EERDPVKITEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPADGRRF 152
Query: 184 --------RIDSVRKEDKGMYQCVIRNEQESAQASGELKLG---------GRFDPPVIKE 226
I D G Y C + + S K ++ P + +
Sbjct: 153 VSQTTGNLYIAKTEASDLGNYSCFATSHIDFITKSVFSKFSQLSLAAEDARQYAPSIKAK 212
Query: 227 SFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKL 262
+D G +C A GNP P+I W
Sbjct: 213 FPADTYALTGQMVTLECFAFGNPVPQIKWRKLDGSQ 248
Score = 54.9 bits (132), Expect = 7e-09
Identities = 21/80 (26%), Positives = 29/80 (36%), Gaps = 11/80 (13%)
Query: 30 GESFALLCEAQEN-----MWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYL 84
G C A W + +G + +R++ G L + +EDSG Y
Sbjct: 309 GSDLRWSCVASGKPRPAVRWLR--DG----QPLASQNRIEVSGGELRFSKLVLEDSGMYQ 362
Query: 85 CVVNNSVGGESVETVLTVTA 104
CV N G LTV A
Sbjct: 363 CVAENKHGTVYASAELTVQA 382
>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex,
beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo
sapiens}
Length = 339
Score = 136 bits (343), Expect = 2e-38
Identities = 51/265 (19%), Positives = 77/265 (29%), Gaps = 57/265 (21%)
Query: 30 GESFALLCEAQEN------------MWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKV 77
GE AL C W K S+R V R+ G L + A
Sbjct: 33 GEPVALRCPQVPYWLWASVSPRINLTWHK--NDSARTVPGEEETRMWAQDGALWLLPALQ 90
Query: 78 EDSGKYLCVVNNSVGGESVETVLTVTAPLAAGVEPTV--QTIDFGRPAQFTCKYEISPPL 135
EDSG Y+C N+ + + L V A + Q + C
Sbjct: 91 EDSGTYVCTTRNASYCDKMSIELRVFENTDAFLPFISYPQILTLSTSGVLVCP------- 143
Query: 136 AAGVEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNEPVF--------RIDS 187
+ I W KD + NE +
Sbjct: 144 -----------------DLSEFTRDKTDVKIQWYKDSLLLDKDNEKFLSVRGTTHLLVHD 186
Query: 188 VRKEDKGMYQCVIRNE----QESAQASGELKLGGRFD--PPVIKESFSDETLNPGPNYYF 241
V ED G Y+CV+ Q + S EL++ + + PVI + + G
Sbjct: 187 VALEDAGYYRCVLTFAHEGQQYNITRSIELRIKKKKEETIPVIISPLKTISASLGSRLTI 246
Query: 242 KC---IASGNPTPEISWYLDGKKLV 263
C + +G P + W+ +
Sbjct: 247 PCKVFLGTGTPLTTMLWWTANDTHI 271
Score = 87.4 bits (216), Expect = 4e-20
Identities = 25/151 (16%), Positives = 39/151 (25%), Gaps = 22/151 (14%)
Query: 138 GVEPTVQTIDFGRPAQFTCKY-------EGNPVKTISWMKDGKPVPDHNEPVFR------ 184
G + G P C +P ++W K+ E R
Sbjct: 22 GRHYKREFRLEGEPVALRCPQVPYWLWASVSPRINLTWHKNDSARTVPGEEETRMWAQDG 81
Query: 185 ---IDSVRKEDKGMYQCVIRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPN--- 238
+ +ED G Y C RN + S EL++ + + L +
Sbjct: 82 ALWLLPALQEDSGTYVCTTRNASYCDKMSIELRVFEN-TDAFLPFISYPQILTLSTSGVL 140
Query: 239 --YYFKCIASGNPTPEISWYLDGKKLVNAER 267
+I WY D L
Sbjct: 141 VCPDLSEFTRDKTDVKIQWYKDSLLLDKDNE 171
Score = 80.5 bits (198), Expect = 9e-18
Identities = 33/224 (14%), Positives = 60/224 (26%), Gaps = 65/224 (29%)
Query: 30 GESFALLCEAQENM----------WFKF---IEGSSRKVAVPLNDRVKQVSGTLIIKEAK 76
S L+C W+K ++ + K + L++ +
Sbjct: 135 STSGVLVCPDLSEFTRDKTDVKIQWYKDSLLLDKDNEKFLSVRG------TTHLLVHDVA 188
Query: 77 VEDSGKYLCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLA 136
+ED+G Y CV+ + G+ ++ E ++
Sbjct: 189 LEDAGYYRCVLTFAHEGQQYNITRSI--------ELRIKKKKEETIPVII---------- 230
Query: 137 AGVEPTVQTIDFGRPAQFTCK---YEGNPVKTISWMKDGKPVPDHNEPVFR--------- 184
+ G CK G P+ T+ W + P R
Sbjct: 231 --SPLKTISASLGSRLTIPCKVFLGTGTPLTTMLWWTANDTHIESAYPGGRVTEGPRQEY 288
Query: 185 -------------IDSVRKEDKGM-YQCVIRNEQESAQASGELK 214
D V +ED M ++CV+ N +K
Sbjct: 289 SENNENYIEVPLIFDPVTREDLHMDFKCVVHNTLSFQTLRTTVK 332
>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor
protein tyrosine phosphatase; HET: NAG; 2.00A {Mus
musculus} PDB: 3jxa_A*
Length = 384
Score = 136 bits (343), Expect = 5e-38
Identities = 59/255 (23%), Positives = 93/255 (36%), Gaps = 47/255 (18%)
Query: 30 GESFALLCEAQEN------MWFKFIEGSSRKVAVPLNDRVKQV-SGTLIIKEAKVEDSGK 82
G+ LLC + W + + N R +G L I + + D G
Sbjct: 117 GQGMVLLCGPPPHSGELSYAWIF-----NEYPSYQDNRRFVSQETGNLYIAKVEKSDVGN 171
Query: 83 YLCVVNNSVGGESV---ETVLTV-TAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAG 138
Y CVV N+V V T L + + EP ++
Sbjct: 172 YTCVVTNTVTNHKVLGPPTPLILRNDGVMGEYEPKIEV---------------------- 209
Query: 139 VEPTVQTIDFGRPAQFTCKYEGNPVKTISWMK-DGKPVPDHNEPVF-----RIDSVRKED 192
P + G + C GNPV TI W + DGKP+ I + ++ED
Sbjct: 210 QFPETVPAEKGTTVKLECFALGNPVPTILWRRADGKPIARKARRHKSNGILEIPNFQQED 269
Query: 193 KGMYQCVIRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPE 252
G Y+CV N + A G+L + P + +D + + +++C A+G P P
Sbjct: 270 AGSYECVAENSRGKNVAKGQLTF---YAQPNWVQIINDIHVAMEESVFWECKANGRPKPT 326
Query: 253 ISWYLDGKKLVNAER 267
W +G L+ +R
Sbjct: 327 YRWLKNGDPLLTRDR 341
Score = 130 bits (328), Expect = 8e-36
Identities = 44/195 (22%), Positives = 63/195 (32%), Gaps = 44/195 (22%)
Query: 30 GESFALLCEAQEN-----MWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYL 84
G + L C A N +W + + + R + +G L I + ED+G Y
Sbjct: 220 GTTVKLECFALGNPVPTILWRR-----ADGKPIARKARRHKSNGILEIPNFQQEDAGSYE 274
Query: 85 CVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQ 144
CV NS G + LT A +
Sbjct: 275 CVAENSRGKNVAKGQLTFYAQP-----------------NWV------------QIINDI 305
Query: 145 TIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDH-----NEPVFRIDSVRKEDKGMYQCV 199
+ + CK G P T W+K+G P+ + I V D GMYQCV
Sbjct: 306 HVAMEESVFWECKANGRPKPTYRWLKNGDPLLTRDRIQIEQGTLNITIVNLSDAGMYQCV 365
Query: 200 IRNEQESAQASGELK 214
N+ +S EL
Sbjct: 366 AENKHGVIFSSAELS 380
Score = 125 bits (315), Expect = 7e-34
Identities = 53/278 (19%), Positives = 90/278 (32%), Gaps = 54/278 (19%)
Query: 13 APTFSSV-SDIIRFKKPGGESFALLCEAQEN-----MWFKFIEGSSRKVAVPLNDRVKQV 66
P F S ++ + L CE + N W + V + ++ R V
Sbjct: 5 GPVFVQEPSHVMFPLDSEEKKVKLSCEVKGNPKPHIRWKL----NGTDVDIGMDFRYSVV 60
Query: 67 SGTLIIKE-AKVEDSGKYLCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQF 125
G+L+I K +D+G Y C+ NS G T+++ A L +T
Sbjct: 61 DGSLLINNPNKTQDAGTYQCIATNSFG-----TIVSREAKLQFAYLENFKT--------- 106
Query: 126 TCKYEISPPLAAGVEPTVQTIDFGRPAQFTCK-YEGNPVKTISWMKDGKPVPDHNEPVF- 183
+ ++ G+ C + + +W+ + P N
Sbjct: 107 -------------RTRSTVSVRRGQGMVLLCGPPPHSGELSYAWIFNEYPSYQDNRRFVS 153
Query: 184 ------RIDSVRKEDKGMYQCVIRNEQESAQASGEL--------KLGGRFDPPVIKESFS 229
I V K D G Y CV+ N + + G + G ++P + +
Sbjct: 154 QETGNLYIAKVEKSDVGNYTCVVTNTVTNHKVLGPPTPLILRNDGVMGEYEPKIEVQFPE 213
Query: 230 DETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNAER 267
G +C A GNP P I W K + +
Sbjct: 214 TVPAEKGTTVKLECFALGNPVPTILWRRADGKPIARKA 251
Score = 54.8 bits (132), Expect = 6e-09
Identities = 23/80 (28%), Positives = 30/80 (37%), Gaps = 11/80 (13%)
Query: 30 GESFALLCEAQEN-----MWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYL 84
ES C+A W K G + DR++ GTL I + D+G Y
Sbjct: 310 EESVFWECKANGRPKPTYRWLK--NG----DPLLTRDRIQIEQGTLNITIVNLSDAGMYQ 363
Query: 85 CVVNNSVGGESVETVLTVTA 104
CV N G L+V A
Sbjct: 364 CVAENKHGVIFSSAELSVIA 383
>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1,
isoform 2; hydrolase, immunoglobulin domain, nucleus,
protease; 2.80A {Homo sapiens}
Length = 218
Score = 131 bits (332), Expect = 6e-38
Identities = 47/211 (22%), Positives = 75/211 (35%), Gaps = 34/211 (16%)
Query: 30 GESFALLCEAQEN-----MWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYL 84
G+ L C A + WFK +P + + LI V+D+G Y+
Sbjct: 33 GQFVKLCCRATGHPFVQYQWFK--MNKE----IPNGN-----TSELIFNAVHVKDAGFYV 81
Query: 85 CVVNNSVGGE-SVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTV 143
C VNN+ E S + L V Q + L VEPT
Sbjct: 82 CRVNNNFTFEFSQWSQLDVCDI--------------PESFQRSVDGVSESKLQICVEPTS 127
Query: 144 QTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNEPVFRIDSVRKEDKGMYQCVIRNE 203
Q + G C G+P+ W K+ P+ + ++ + V E +G Y C + N+
Sbjct: 128 QKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHETKKLYMVPYVDLEHQGTYWCHVYND 187
Query: 204 QESAQASGEL---KLGGRFDPPVIKESFSDE 231
++S + P KE +D+
Sbjct: 188 RDSQDSKKVEIIIDELNNLGHPDNKEQTTDQ 218
Score = 114 bits (288), Expect = 2e-31
Identities = 30/142 (21%), Positives = 53/142 (37%), Gaps = 13/142 (9%)
Query: 139 VEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNEPVFRIDSVRKEDKGMYQC 198
V P + + G+ + C+ G+P W K K +P+ N ++V +D G Y C
Sbjct: 23 VNPESKAVLAGQFVKLCCRATGHPFVQYQWFKMNKEIPNGNTSELIFNAVHVKDAGFYVC 82
Query: 199 VIRN---EQESAQAS----------GELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIA 245
+ N + S + G I + + L PG +C+A
Sbjct: 83 RVNNNFTFEFSQWSQLDVCDIPESFQRSVDGVSESKLQICVEPTSQKLMPGSTLVLQCVA 142
Query: 246 SGNPTPEISWYLDGKKLVNAER 267
G+P P W+ + L + +
Sbjct: 143 VGSPIPHYQWFKNELPLTHETK 164
Score = 48.3 bits (115), Expect = 4e-07
Identities = 8/42 (19%), Positives = 17/42 (40%)
Query: 221 PPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKL 262
I + + + G C A+G+P + W+ K++
Sbjct: 18 GSKITVNPESKAVLAGQFVKLCCRATGHPFVQYQWFKMNKEI 59
>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A
2f8v_A
Length = 194
Score = 128 bits (323), Expect = 7e-37
Identities = 31/140 (22%), Positives = 52/140 (37%), Gaps = 11/140 (7%)
Query: 139 VEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNEPVFR-----------IDS 187
+ G A F G PV +SW +DG+ + P + I +
Sbjct: 10 QPLQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDGRAKLTIPA 69
Query: 188 VRKEDKGMYQCVIRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASG 247
V K + G Y N A ++ EL + PP + T+ G + +G
Sbjct: 70 VTKANSGRYSLKATNGSGQATSTAELLVKAETAPPNFVQRLQSMTVRQGSQVRLQVRVTG 129
Query: 248 NPTPEISWYLDGKKLVNAER 267
PTP + +Y DG ++ ++
Sbjct: 130 IPTPVVKFYRDGAEIQSSLD 149
Score = 100 bits (252), Expect = 3e-26
Identities = 37/219 (16%), Positives = 62/219 (28%), Gaps = 48/219 (21%)
Query: 12 KAPTFSSV-SDIIRFKKPGGESFALLCEAQEN-----MWFKFIEGSSRKVAVPLNDRVKQ 65
+APTF+ ++ + G + WF+ +G + ++
Sbjct: 4 QAPTFTQPLQSVVVLE---GSTATFEAHISGFPVPEVSWFR--DGQVISTSTLPGVQISF 58
Query: 66 VSG--TLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPA 123
G L I +SG+Y N G + L V A A P
Sbjct: 59 SDGRAKLTIPAVTKANSGRYSLKATNGSGQATSTAELLVKAETA--------------PP 104
Query: 124 QFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPV-------- 175
F T+ G + + G P + + +DG +
Sbjct: 105 NFV------------QRLQSMTVRQGSQVRLQVRVTGIPTPVVKFYRDGAEIQSSLDFQI 152
Query: 176 -PDHNEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGEL 213
+ + I ED G Y N A ++ EL
Sbjct: 153 SQEGDLYSLLIAEAYPEDSGTYSVNATNSVGRATSTAEL 191
Score = 47.4 bits (113), Expect = 7e-07
Identities = 12/47 (25%), Positives = 20/47 (42%)
Query: 221 PPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNAER 267
P + + G F+ SG P PE+SW+ DG+ + +
Sbjct: 5 APTFTQPLQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTL 51
Score = 42.4 bits (100), Expect = 5e-05
Identities = 18/82 (21%), Positives = 28/82 (34%), Gaps = 15/82 (18%)
Query: 30 GESFALLCEAQEN-----MWFKFIEGSSRKVAVPLNDRVKQVSG----TLIIKEAKVEDS 80
G L +++ +G + + + +L+I EA EDS
Sbjct: 118 GSQVRLQVRVTGIPTPVVKFYR--DG----AEIQSSLDFQISQEGDLYSLLIAEAYPEDS 171
Query: 81 GKYLCVVNNSVGGESVETVLTV 102
G Y NSVG + L V
Sbjct: 172 GTYSVNATNSVGRATSTAELLV 193
>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo
sapiens} PDB: 3p40_A*
Length = 404
Score = 132 bits (334), Expect = 2e-36
Identities = 50/255 (19%), Positives = 80/255 (31%), Gaps = 44/255 (17%)
Query: 30 GESFALLCEAQENM------WFKFIEGSSRKVAVPLNDRVKQV-SGTLIIKEAKVEDS-G 81
G L C + W S + + RV Q +G L ++D
Sbjct: 131 GAPLTLQCNPPPGLPSPVIFWMS-----SSMEPITQDKRVSQGHNGDLYFSNVMLQDMQT 185
Query: 82 KYLCVVNNSVGGE---SVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAG 138
Y C L V G +
Sbjct: 186 DYSCNARFHFTHTIQQKNPFTLKVLTTRGVAERTPSFMYPQGTASS-------------- 231
Query: 139 VEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVP------DHNEPVFRIDSVRKED 192
Q + G C G P I+W K G +P ++ RI +V +ED
Sbjct: 232 -----QMVLRGMDLLLECIASGVPTPDIAWYKKGGDLPSDKAKFENFNKALRITNVSEED 286
Query: 193 KGMYQCVIRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPE 252
G Y C+ N+ S + + +++ P + + L PG + C A+GNP P
Sbjct: 287 SGEYFCLASNKMGSIRHTISVRV---KAAPYWLDEPKNLILAPGEDGRLVCRANGNPKPT 343
Query: 253 ISWYLDGKKLVNAER 267
+ W ++G+ L +A
Sbjct: 344 VQWMVNGEPLQSAPP 358
Score = 112 bits (282), Expect = 4e-29
Identities = 39/199 (19%), Positives = 64/199 (32%), Gaps = 49/199 (24%)
Query: 30 GESFALLCEAQEN-----MWFKFIEGSSRKVAVPLND-RVKQVSGTLIIKEAKVEDSGKY 83
G L C A W+K +G +P + + + + L I EDSG+Y
Sbjct: 237 GMDLLLECIASGVPTPDIAWYK--KGGD----LPSDKAKFENFNKALRITNVSEEDSGEY 290
Query: 84 LCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTV 143
C+ +N +G + V A + EP
Sbjct: 291 FCLASNKMGSIRHTISVRVKA-----------------APYWL------------DEPKN 321
Query: 144 QTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNEPVFR--------IDSVRKEDKGM 195
+ G + C+ GNP T+ WM +G+P+ R + + +
Sbjct: 322 LILAPGEDGRLVCRANGNPKPTVQWMVNGEPLQSAPPNPNREVAGDTIIFRDTQISSRAV 381
Query: 196 YQCVIRNEQESAQASGELK 214
YQC NE A+ +
Sbjct: 382 YQCNTSNEHGYLLANAFVS 400
Score = 107 bits (268), Expect = 5e-27
Identities = 54/261 (20%), Positives = 81/261 (31%), Gaps = 57/261 (21%)
Query: 30 GESFALLCEAQEN-----MWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKE----AKVEDS 80
++ + CEA+ N W + +A +++ SGTL+I E
Sbjct: 32 RDNILIECEAKGNPAPSFHWTR--NSRFFNIAKDPRVSMRRRSGTLVIDFRSGGRPEEYE 89
Query: 81 GKYLCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVE 140
G+Y C N G T L+ L P
Sbjct: 90 GEYQCFARNKFG-----TALSNRIRLQVSKSPLWPK----------------------EN 122
Query: 141 PTVQTIDFGRPAQFTCK-YEGNPVKTISWMKDGKPVPDHNEPVF-------RIDSVRKED 192
+ G P C G P I WM ++ V +V +D
Sbjct: 123 LDPVVVQEGAPLTLQCNPPPGLPSPVIFWMSSSMEPITQDKRVSQGHNGDLYFSNVMLQD 182
Query: 193 -KGMYQCVIRNEQ-ESAQASGELKL------GGRFDPPVI---KESFSDETLNPGPNYYF 241
+ Y C R + Q L G P + + S + + G +
Sbjct: 183 MQTDYSCNARFHFTHTIQQKNPFTLKVLTTRGVAERTPSFMYPQGTASSQMVLRGMDLLL 242
Query: 242 KCIASGNPTPEISWYLDGKKL 262
+CIASG PTP+I+WY G L
Sbjct: 243 ECIASGVPTPDIAWYKKGGDL 263
Score = 86.1 bits (213), Expect = 1e-19
Identities = 29/150 (19%), Positives = 52/150 (34%), Gaps = 15/150 (10%)
Query: 132 SPPLAAGVEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNEPVFRI------ 185
PP +D C+ +GNP + W ++ + +P +
Sbjct: 15 QPPTITKQSAKDHIVDPRDNILIECEAKGNPAPSFHWTRNSRFFNIAKDPRVSMRRRSGT 74
Query: 186 -------DSVRKEDKGMYQCVIRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPN 238
+E +G YQC RN+ +A S ++L P KE+ + G
Sbjct: 75 LVIDFRSGGRPEEYEGEYQCFARNKFGTAL-SNRIRLQVSKSPLWPKENLDPVVVQEGAP 133
Query: 239 YYFKC-IASGNPTPEISWYLDGKKLVNAER 267
+C G P+P I W + + ++
Sbjct: 134 LTLQCNPPPGLPSPVIFWMSSSMEPITQDK 163
Score = 50.3 bits (120), Expect = 2e-07
Identities = 16/78 (20%), Positives = 27/78 (34%), Gaps = 8/78 (10%)
Query: 30 GESFALLCEAQEN-----MWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYL 84
GE L+C A N W + P N + T+I ++ ++ Y
Sbjct: 327 GEDGRLVCRANGNPKPTVQWMV---NGEPLQSAPPNPNREVAGDTIIFRDTQISSRAVYQ 383
Query: 85 CVVNNSVGGESVETVLTV 102
C +N G ++V
Sbjct: 384 CNTSNEHGYLLANAFVSV 401
>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A
{Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4
b.1.1.4
Length = 395
Score = 131 bits (332), Expect = 2e-36
Identities = 46/272 (16%), Positives = 71/272 (26%), Gaps = 68/272 (25%)
Query: 30 GESFALLCEAQEN------MWFK---FIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDS 80
L C + N W K +++ G+L+ + D
Sbjct: 21 NNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNA------ALRKDEGSLVFLRPQASDE 74
Query: 81 GKYLCVVNNSVG-GESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGV 139
G Y C G S T +A+ + +T GRP Q C P
Sbjct: 75 GHYQCFAETPAGVASSRVISFRKTYLIASPAKTHEKTPIEGRPFQLDC----VLP----- 125
Query: 140 EPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNEPVF-------------RID 186
P I+W K + +
Sbjct: 126 -------------------NAYPKPLITWKKRLSGADPNADVTDFDRRITAGPDGNLYFT 166
Query: 187 SVRKEDK---GMYQCVIRN---EQESAQASGELKL-----GGRFDPPVIKESFSDETLNP 235
V KED Y C +N ++E E+K G PV + D
Sbjct: 167 IVTKEDVSDIYKYVCTAKNAAVDEEVVLVEYEIKGVTKDNSGYKGEPVPQYVSKDMMAKA 226
Query: 236 GPNYYFKCIASGNPTPEISWYLDGKKLVNAER 267
G C+ NP +++ +GK +
Sbjct: 227 GDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPE 258
Score = 116 bits (291), Expect = 2e-30
Identities = 48/257 (18%), Positives = 72/257 (28%), Gaps = 45/257 (17%)
Query: 30 GESFALLCEAQEN------MWFK-FIEGSSRKVAVPLNDRVKQV-SGTLII---KEAKVE 78
G F L C W K + R+ G L + V
Sbjct: 115 GRPFQLDCVLPNAYPKPLITWKKRLSGADPNADVTDFDRRITAGPDGNLYFTIVTKEDVS 174
Query: 79 DSGKYLCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAG 138
D KY+C N+ E V V + G P
Sbjct: 175 DIYKYVCTAKNAAVDEEV-----VLVEYEIKGVTKDNSGYKGEPVPQ------------- 216
Query: 139 VEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNEPVF-----------RIDS 187
G C Y NP+ ++ K+GK V + E +
Sbjct: 217 YVSKDMMAKAGDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKT 276
Query: 188 VRKEDKGMYQCVIRNEQESAQA-SGELKLGGRFDPPVIKESFSDE-TLNPGPNYYFKCIA 245
ED+G+Y C + N Q S +L + P ++ + G + C
Sbjct: 277 TLPEDEGVYTCEVDNGVGKPQKHSLKLTV---VSAPKYEQKPEKVIVVKQGQDVTIPCKV 333
Query: 246 SGNPTPEISWYLDGKKL 262
+G P P + W + K L
Sbjct: 334 TGLPAPNVVWSHNAKPL 350
Score = 115 bits (288), Expect = 7e-30
Identities = 44/223 (19%), Positives = 66/223 (29%), Gaps = 40/223 (17%)
Query: 2 VGSDLKPVGFKAPTFSSVSDIIRFKKPGGESFALLCEAQEN-----MWFKFIEGSSRKVA 56
+ P VS + K G+ + C N +FK + +
Sbjct: 201 GVTKDNSGYKGEPVPQYVSKDMMAKA--GDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPE 258
Query: 57 VPLNDRVKQVSGTLIIKEAKVEDSGKYLCVVNNSVGGESVETV-LTVTAPLAAGVEPTVQ 115
+ + L+ K ED G Y C V+N VG ++ LTV + P
Sbjct: 259 DRITRHNRTSGKRLLFKTTLPEDEGVYTCEVDNGVGKPQKHSLKLTVVSA------PKY- 311
Query: 116 TIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPV 175
P V + G+ CK G P + W + KP+
Sbjct: 312 ---------------EQKP------EKVIVVKQGQDVTIPCKVTGLPAPNVVWSHNAKPL 350
Query: 176 PDHNEPVF----RIDSVRKEDKGMYQCVIRNEQESAQASGELK 214
V I V+ DKG Y C NE ++
Sbjct: 351 SGGRATVTDSGLVIKGVKNGDKGYYGCRATNEHGDKYFETLVQ 393
Score = 85.0 bits (210), Expect = 4e-19
Identities = 24/135 (17%), Positives = 36/135 (26%), Gaps = 14/135 (10%)
Query: 139 VEPTVQTIDFGRPAQFTCKYEGNPVKT-ISWMKDGKPVPDHNEPV--------FRIDSVR 189
+P P C EGN SW KDGK +
Sbjct: 11 DQPAEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAALRKDEGSLVFLRPQ 70
Query: 190 KEDKGMYQCVIRNEQ-ESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKC-IASG 247
D+G YQC ++ + ++T G + C + +
Sbjct: 71 ASDEGHYQCFAETPAGVASSRVISFRKTY---LIASPAKTHEKTPIEGRPFQLDCVLPNA 127
Query: 248 NPTPEISWYLDGKKL 262
P P I+W
Sbjct: 128 YPKPLITWKKRLSGA 142
Score = 51.1 bits (122), Expect = 1e-07
Identities = 13/48 (27%), Positives = 19/48 (39%), Gaps = 1/48 (2%)
Query: 221 PPVIKESFSDETLNPGPNYYFKCIASGNPTP-EISWYLDGKKLVNAER 267
PV+K+ ++ +CI GN + SW DGK E
Sbjct: 6 YPVLKDQPAEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEH 53
Score = 50.3 bits (120), Expect = 2e-07
Identities = 20/79 (25%), Positives = 28/79 (35%), Gaps = 14/79 (17%)
Query: 30 GESFALLCEAQEN-----MWFKFIEGSSRKVAVPL-NDRVKQVSGTLIIKEAKVEDSGKY 83
G+ + C+ +W A PL R L+IK K D G Y
Sbjct: 324 GQDVTIPCKVTGLPAPNVVWSH--------NAKPLSGGRATVTDSGLVIKGVKNGDKGYY 375
Query: 84 LCVVNNSVGGESVETVLTV 102
C N G + ET++ V
Sbjct: 376 GCRATNEHGDKYFETLVQV 394
>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor
tyrosine kinase, growth factor cytoki dimerization,
transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A*
Length = 524
Score = 132 bits (334), Expect = 7e-36
Identities = 47/262 (17%), Positives = 81/262 (30%), Gaps = 59/262 (22%)
Query: 30 GESFALLCEAQEN------MWFK---FIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDS 80
GE F + C ++ W + + + + D + TL I A+V DS
Sbjct: 226 GEEFTVTCTIKDVSSSVYSTWKRENSQTKLQEKYNSWHHGDFNYERQATLTISSARVNDS 285
Query: 81 GKYLCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVE 140
G ++C NN+ G +V T L V + P
Sbjct: 286 GVFMCYANNTFGSANVTTTLEVVDKGFINIFPM--------------------------I 319
Query: 141 PTVQTIDFGRPAQFTCKYEGNPV-KTISWMKDGKPVPDHNEPVF--------------RI 185
T ++ G +YE P + W+ + D E +
Sbjct: 320 NTTVFVNDGENVDLIVEYEAFPKPEHQQWIYMNRTFTDKWEDYPKSENESNIRYVSELHL 379
Query: 186 DSVRKEDKGMYQCVIRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIA 245
++ + G Y ++ N +A + + + P I T + N +C+A
Sbjct: 380 TRLKGTEGGTYTFLVSNSDVNAAIAFNVYV---NTKPEI------LTYDRLVNGMLQCVA 430
Query: 246 SGNPTPEISWYLDGKKLVNAER 267
+G P P I WY
Sbjct: 431 AGFPEPTIDWYFCPGTEQRCSA 452
Score = 106 bits (266), Expect = 2e-26
Identities = 39/277 (14%), Positives = 72/277 (25%), Gaps = 58/277 (20%)
Query: 4 SDLKPVGFKAPTFSSVSDIIRFKKPGGESFALLCEAQENM-WFKFIEGSSRKVAVPLNDR 62
+ P P+ + + G+ LLC + W E
Sbjct: 27 PSVSPGEPSPPSIHPGKSDLIVRV--GDEIRLLCTDPGFVKWTF--EILDE--------T 74
Query: 63 VKQVSGTLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRP 122
+ I ++A+ ++GKY C + + + V P +
Sbjct: 75 NENKQNEWITEKAEATNTGKYTCTNKHGLS---NSIYVFVRDP------AKLF------- 118
Query: 123 AQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEGNPVKTISWMK-DGKPVPD---- 177
+ C V S GKP+P
Sbjct: 119 ----------------LVDRSLYGKEDNDTLVRCPLTDPEVTNYSLKGCQGKPLPKDLRF 162
Query: 178 --HNEPVFRIDSVRK-EDKGMYQCVIRNEQESAQASGELKL---GGRFDPPVIKESFSDE 231
+ I SV++ + C + E +S S + L PV+ S +
Sbjct: 163 IPDPKAGIMIKSVKRAYHRLCLHCSVDQEGKS-VLSEKFILKVRPAFKAVPVVSVSKASY 221
Query: 232 TLNPGPNYYFKCIASGNPTP-EISWYLDGKKLVNAER 267
L G + C + +W + + E+
Sbjct: 222 LLREGEEFTVTCTIKDVSSSVYSTWKRENSQTKLQEK 258
Score = 87.4 bits (216), Expect = 8e-20
Identities = 31/226 (13%), Positives = 49/226 (21%), Gaps = 68/226 (30%)
Query: 30 GESFALLCEAQEN------MWFK---FIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDS 80
GE+ L+ E + W N+ + L + K +
Sbjct: 328 GENVDLIVEYEAFPKPEHQQWIYMNRTFTDKWEDYPKSENESNIRYVSELHLTRLKGTEG 387
Query: 81 GKYLCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVE 140
G Y +V+NS ++ + V
Sbjct: 388 GTYTFLVSNSDVNAAIAFNVYVNTK----------------------------------- 412
Query: 141 PTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNEPVF----------------- 183
P + T D C G P TI W + V
Sbjct: 413 PEILTYDRLVNGMLQCVAAGFPEPTIDWYFCPGTEQRCSASVLPVDVQTLNSSGPPFGKL 472
Query: 184 ----RIDSVRKEDKGMYQCVIRNEQESAQASGELKLGGRFDPPVIK 225
IDS + G +C N+ A +
Sbjct: 473 VVQSSIDSSAFKHNGTVECKAYNDVGKTSAYFNFAF---KGNNKEQ 515
Score = 82.8 bits (204), Expect = 4e-18
Identities = 20/191 (10%), Positives = 46/191 (24%), Gaps = 44/191 (23%)
Query: 78 EDSGKYLCVVN----NSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISP 133
+ +LCV+ G +P P++
Sbjct: 5 RGAWDFLCVLLLLLRVQTGSSQPSVSPGEPSP------PSIH------------------ 40
Query: 134 PLAAGVEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHN-EPVFRIDSVRKED 192
+ + G + C G + W + + N + + + +
Sbjct: 41 -----PGKSDLIVRVGDEIRLLCTDPG----FVKWTFEILDETNENKQNEWITEKAEATN 91
Query: 193 KGMYQCVIRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPE 252
G Y C ++ + + + R DP + + +C +
Sbjct: 92 TGKYTCTNKHGLSN-----SIYVFVR-DPAKLFLVDRSLYGKEDNDTLVRCPLTDPEVTN 145
Query: 253 ISWYLDGKKLV 263
S K +
Sbjct: 146 YSLKGCQGKPL 156
Score = 53.1 bits (127), Expect = 3e-08
Identities = 17/83 (20%), Positives = 25/83 (30%), Gaps = 11/83 (13%)
Query: 189 RKEDKGMYQCVI----RNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCI 244
+ CV+ R + S+Q S G PP I SD + G C
Sbjct: 3 GARGAWDFLCVLLLLLRVQTGSSQPSVSP---GEPSPPSIHPGKSDLIVRVGDEIRLLCT 59
Query: 245 ASGNPTPEISWYLDGKKLVNAER 267
G + W + N +
Sbjct: 60 DPG----FVKWTFEILDETNENK 78
Score = 46.6 bits (110), Expect = 4e-06
Identities = 16/101 (15%), Positives = 25/101 (24%), Gaps = 15/101 (14%)
Query: 27 KPGGESFALLCEAQ-----ENMWFKFIEGSSRKVAVPLNDRVKQVS----------GTLI 71
+ L C A W+ R A L V+ ++
Sbjct: 418 YDRLVNGMLQCVAAGFPEPTIDWYFCPGTEQRCSASVLPVDVQTLNSSGPPFGKLVVQSS 477
Query: 72 IKEAKVEDSGKYLCVVNNSVGGESVETVLTVTAPLAAGVEP 112
I + + +G C N VG S + P
Sbjct: 478 IDSSAFKHNGTVECKAYNDVGKTSAYFNFAFKGNNKEQIHP 518
>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain,
vegfr-2, growth factor receptor, VEGF LI
hormone-signaling protein complex, angiogenesis; 3.20A
{Homo sapiens} PDB: 3v6b_R
Length = 772
Score = 134 bits (337), Expect = 1e-35
Identities = 42/268 (15%), Positives = 73/268 (27%), Gaps = 33/268 (12%)
Query: 2 VGSDLKPVGFKAPTFSSVSDIIRFKKPGGESFALLCEAQEN---MWFKFIEGSSRKVAVP 58
L V P S DI+ K + + C Q + +W GS ++V V
Sbjct: 20 ASVGLPSVSLDLPRLSIQKDILTIKA--NTTLQITCRGQRDLDWLWPNNQSGSEQRVEVT 77
Query: 59 LNDRVKQVSGTLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTVTAPL-----AAGVEPT 113
TL I + D+G Y C + + + +
Sbjct: 78 ECSDGLFCK-TLTIPKVIGNDTGAYKCFYRETDLASVIYVYVQDYRSPFIASVSDQHGVV 136
Query: 114 VQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGK 173
T + + C IS ++ ++ DG
Sbjct: 137 YITENKNKTVVIPCLGSISNL-----NVSL----------------CARYPEKRFVPDGN 175
Query: 174 PVPDHNEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLGGRFD-PPVIKESFSDET 232
+ ++ F I S GM C + ES Q+ + + + V+
Sbjct: 176 RISWDSKKGFTIPSYMISYAGMVFCEAKINDESYQSIMYIVVVVGYRIYDVVLSPSHGIE 235
Query: 233 LNPGPNYYFKCIASGNPTPEISWYLDGK 260
L+ G C A I + +
Sbjct: 236 LSVGEKLVLNCTARTELNVGIDFNWEYP 263
Score = 134 bits (337), Expect = 1e-35
Identities = 48/259 (18%), Positives = 73/259 (28%), Gaps = 48/259 (18%)
Query: 30 GESFALLCEAQEN-------MWFK------FIEGSSRKVAVPLNDRVKQVSGTLIIKEAK 76
GE L C A+ W + +R + +K+ TL I
Sbjct: 239 GEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVT 298
Query: 77 VEDSGKYLCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLA 136
D G Y C ++ + + T + V
Sbjct: 299 RSDQGLYTCAASSGLMTKKNSTFVRVHEKPFVAFGSG----------------------- 335
Query: 137 AGVEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPD----HNEPVFRIDSVRKED 192
++ G + KY G P I W K+G P+ V I V + D
Sbjct: 336 ---MESLVEATVGERVRIPAKYLGYPPPEIKWYKNGIPLESNHTIKAGHVLTIMEVSERD 392
Query: 193 KGMYQCVIRNEQESAQASGELKLGGRFDPPVIKESFSD---ETLNPGPNYYFKCIASGNP 249
G Y ++ N + S + L PP I E ++ G C P
Sbjct: 393 TGNYTVILTNPISKEKQSHVVSLVVY-VPPQIGEKSLISPVDSYQYGTTQTLTCTVYAIP 451
Query: 250 TPE-ISWYLDGKKLVNAER 267
P I WY ++ E
Sbjct: 452 PPHHIHWYWQLEEECANEP 470
Score = 117 bits (294), Expect = 6e-30
Identities = 38/242 (15%), Positives = 70/242 (28%), Gaps = 18/242 (7%)
Query: 37 CEAQENMWFKFIEGSSRKVAVPLNDRVKQVSG----TLIIKEAKVEDSGKYLCVVNNSVG 92
W + ++ + G + S Y C N VG
Sbjct: 478 NPYPCEEWRSVEDFQGGNKIEVNKNQFALIEGKNKTVSTLVIQAANVSALYKCEAVNKVG 537
Query: 93 GESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPA 152
VT ++P +Q + C + S + G
Sbjct: 538 RGERVISFHVTRGPEITLQPDMQPTE-QESVSLWCTADRSTF------ENLTWYKLGPQP 590
Query: 153 QFTCKYE----GNPVKTISWMKDGKPVPDHNEPVF--RIDSVRKEDKGMYQCVIRNEQES 206
E W + + + + + +D+G Y C+ ++ +
Sbjct: 591 LPIHVGELPTPVCKNLDTLWKLNATMFSNSTNDILIMELKNASLQDQGDYVCLAQDRKTK 650
Query: 207 AQASGELKLGGR-FDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNA 265
+ +L P I + ++T + G + C ASGNP P+I W+ D + LV
Sbjct: 651 KRHCVVRQLTVLERVAPTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVED 710
Query: 266 ER 267
Sbjct: 711 SG 712
Score = 114 bits (287), Expect = 4e-29
Identities = 34/275 (12%), Positives = 66/275 (24%), Gaps = 46/275 (16%)
Query: 14 PTFSSVSDIIRFKKPGGESFALLCEAQ-ENMWFKFIEGSSRKVAVPLNDRVKQVS-GTLI 71
+ S ++ + ++ + C N+ K VP +R+ S
Sbjct: 127 ASVSDQHGVVYITENKNKTVVIPCLGSISNLNVSLCARYPEKRFVPDGNRISWDSKKGFT 186
Query: 72 IKEAKVEDSGKYLCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEI 131
I + +G C + + V
Sbjct: 187 IPSYMISYAGMVFCEAKINDESYQSIMYIVVVVGY------------------------- 221
Query: 132 SPPLAAGVEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNEPVF-------- 183
+ G C I + + ++ +
Sbjct: 222 RIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQS 281
Query: 184 -----------RIDSVRKEDKGMYQCVIRNEQESAQASGELKLGGRFDPPVIKESFSDET 232
ID V + D+G+Y C + + + S +++ + S
Sbjct: 282 GSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEKPFVAFGSGMESLVE 341
Query: 233 LNPGPNYYFKCIASGNPTPEISWYLDGKKLVNAER 267
G G P PEI WY +G L +
Sbjct: 342 ATVGERVRIPAKYLGYPPPEIKWYKNGIPLESNHT 376
Score = 102 bits (254), Expect = 1e-24
Identities = 37/262 (14%), Positives = 77/262 (29%), Gaps = 35/262 (13%)
Query: 30 GESFALLCEAQEN-----MWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYL 84
GE + + W+K G + + N +K L I E D+G Y
Sbjct: 345 GERVRIPAKYLGYPPPEIKWYK--NG----IPLESNHTIKA-GHVLTIMEVSERDTGNYT 397
Query: 85 CVVNNSVGGESVETVLTVTAPLAAGVEP-----TVQTIDFGRPAQFTCK----------- 128
++ N + E V+++ + + V + +G TC
Sbjct: 398 VILTNPISKEKQSHVVSLVVYVPPQIGEKSLISPVDSYQYGTTQTLTCTVYAIPPPHHIH 457
Query: 129 --YEISPPLAAGVEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPD-HNEPVFRI 185
+++ A V + ++ + I K+ + + N+ V +
Sbjct: 458 WYWQLEEECANEPSQAVSVTNPYPCEEWRSVEDFQGGNKIEVNKNQFALIEGKNKTVSTL 517
Query: 186 DSVRKEDKGMYQCVIRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIA 245
+Y+C N+ + + P I D + C A
Sbjct: 518 VIQAANVSALYKCEAVNKVGRGERVISFHV---TRGPEI-TLQPDMQPTEQESVSLWCTA 573
Query: 246 SGNPTPEISWYLDGKKLVNAER 267
+ ++WY G + +
Sbjct: 574 DRSTFENLTWYKLGPQPLPIHV 595
Score = 99.4 bits (247), Expect = 8e-24
Identities = 38/209 (18%), Positives = 69/209 (33%), Gaps = 33/209 (15%)
Query: 23 IRFKKPGGESFALLCEAQENMWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGK 82
+ + K G + + K ++ + A ++ + +K A ++D G
Sbjct: 581 LTWYKLGPQPLPIHVGELPTPVCKNLDTLWKLNATMFSNS-TNDILIMELKNASLQDQGD 639
Query: 83 YLCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPT 142
Y+C+ + + V +T V V T
Sbjct: 640 YVCLAQDRKTKKRHCVVRQLT------VLERV-------APTIT------------GNLE 674
Query: 143 VQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNEPVF-------RIDSVRKEDKGM 195
QT G + +C GNP I W KD + + + + V I VRKED+G+
Sbjct: 675 NQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLKDGNRNLTIRRVRKEDEGL 734
Query: 196 YQCVIRNEQESAQASGELKLGGRFDPPVI 224
Y C + A+ + G + +
Sbjct: 735 YTCQACSVLGCAKVEAFFIIEGAQEKTNL 763
Score = 74.8 bits (183), Expect = 2e-15
Identities = 24/197 (12%), Positives = 43/197 (21%), Gaps = 46/197 (23%)
Query: 72 IKEAKVEDSGKYLCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEI 131
++ + +LCV + L + P +
Sbjct: 1 MQSKVLLAVALWLCVETRAASVGLPSVSLDL---------PRLS---------------- 35
Query: 132 SPPLAAGVEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNE----------P 181
++ + TI Q TC G W + E
Sbjct: 36 -------IQKDILTIKANTTLQITC--RGQRDLDWLWPNNQSGSEQRVEVTECSDGLFCK 86
Query: 182 VFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLGG--RFDPPVIKESFSDETLNPGPNY 239
I V D G Y+C R ++ ++ + T N
Sbjct: 87 TLTIPKVIGNDTGAYKCFYRETDLASVIYVYVQDYRSPFIASVSDQHGVVYITENKNKTV 146
Query: 240 YFKCIASGNPTPEISWY 256
C+ S +
Sbjct: 147 VIPCLGSISNLNVSLCA 163
>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical
bundle cytokine, CY receptor complex, extracellular
complex; HET: NAG; 4.30A {Homo sapiens}
Length = 423
Score = 129 bits (324), Expect = 6e-35
Identities = 29/249 (11%), Positives = 61/249 (24%), Gaps = 48/249 (19%)
Query: 30 GESFALLCEAQ-----ENMWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYL 84
S L +W + + P D + +++I + +G+YL
Sbjct: 63 SASITLQVLVDAPGNISCLWVFKHSSLNCQ---PHFDLQNRGVVSMVILKMTETQAGEYL 119
Query: 85 CVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQ 144
+ + ++ +++ L + + A
Sbjct: 120 LFIQSEATNYTILFTVSIRNTLLYTLRRPYFRKMENQDA--------------------- 158
Query: 145 TIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNEPVFRIDS-----VRKEDKGMYQCV 199
C E P + W+ E + + + +C
Sbjct: 159 ---------LVCISESVPEPIVEWVLCDSQGESCKEESPAVVKKEEKVLHELFGTDIRCC 209
Query: 200 IRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIA-SGNPTPEISWYLD 258
RNE + + L G + +C A N ++W L+
Sbjct: 210 ARNELGRECTRLFT----IDLNQTPQTTLPQLFLKVGEPLWIRCKAVHVNHGFGLTWELE 265
Query: 259 GKKLVNAER 267
K L
Sbjct: 266 NKALEEGNY 274
Score = 104 bits (260), Expect = 6e-26
Identities = 21/199 (10%), Positives = 45/199 (22%), Gaps = 45/199 (22%)
Query: 72 IKEAKVEDSGKYLCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEI 131
++ V S Y V + + L + TV
Sbjct: 19 NNDSSVGKSSSYPMVSESPED---LGCALRPQSS------GTVY---------------- 53
Query: 132 SPPLAAGVEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVP--------DHNEPVF 183
E +D + + W+ + +
Sbjct: 54 --------EAAAVEVDVSASITLQVLVDAPGNISCLWVFKHSSLNCQPHFDLQNRGVVSM 105
Query: 184 RIDSVRKEDKGMYQCVIRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKC 243
I + + G Y I++E + + + + + + C
Sbjct: 106 VILKMTETQAGEYLLFIQSEATNYTILFTVSI---RNTLLYTLRRPYFRKMENQD-ALVC 161
Query: 244 IASGNPTPEISWYLDGKKL 262
I+ P P + W L +
Sbjct: 162 ISESVPEPIVEWVLCDSQG 180
Score = 99.4 bits (247), Expect = 3e-24
Identities = 35/261 (13%), Positives = 60/261 (22%), Gaps = 65/261 (24%)
Query: 30 GESFALLCEAQEN-----MWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYL 84
AL+C ++ W S + + V ++ E D
Sbjct: 154 ENQDALVCISESVPEPIVEWVL--CDSQGESCKEESPAV-VKKEEKVLHELFGTD---IR 207
Query: 85 CVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQ 144
C N +G E P
Sbjct: 208 CCARNELGRECTRLFTIDLNQ---------------------------TPQ---TTLPQL 237
Query: 145 TIDFGRPAQFTCK-YEGNPVKTISWMKDGKPVPDHNEPVF---------------RIDSV 188
+ G P CK N ++W + K + + N + SV
Sbjct: 238 FLKVGEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSV 297
Query: 189 RKEDKGMYQCVIRNEQESAQASGELKLGGRFDPPVIKESFSDETL--NPGPNYYFKCIAS 246
+ D G Y C S + + + I + S E + + F
Sbjct: 298 ARNDTGYYTCSSSKH---PSQSALVTI---VEKGFINATNSSEDYEIDQYEEFCFSVRFK 351
Query: 247 GNPTPEISWYLDGKKLVNAER 267
P +W K ++
Sbjct: 352 AYPQIRCTWTFSRKSFPCEQK 372
Score = 97.8 bits (243), Expect = 1e-23
Identities = 27/200 (13%), Positives = 47/200 (23%), Gaps = 45/200 (22%)
Query: 30 GESFALLCEAQEN------MWFK----FIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVED 79
GE + C+A W EG+ +++ +R + D
Sbjct: 242 GEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARND 301
Query: 80 SGKYLCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGV 139
+G Y C + ++T+ + A
Sbjct: 302 TGYYTCSSSKHPS---QSALVTIVEK---------------------------GFINATN 331
Query: 140 EPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPD-----HNEPVFRIDSVRKEDKG 194
ID F+ +++ P +W K P N K G
Sbjct: 332 SSEDYEIDQYEEFCFSVRFKAYPQIRCTWTFSRKSFPCEQKGLDNGYSISKFCNHKHQPG 391
Query: 195 MYQCVIRNEQESAQASGELK 214
Y N+ L
Sbjct: 392 EYIFHAENDDAQFTKMFTLN 411
Score = 53.1 bits (127), Expect = 2e-08
Identities = 6/84 (7%), Positives = 20/84 (23%), Gaps = 7/84 (8%)
Query: 184 RIDSVRKEDKGMYQCVIRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKC 243
+ + Y V + ++ L + + E+ + ++ + +
Sbjct: 18 KNNDSSVGKSSSYPMVSESPEDLG-----CALRPQ-SSGTVYEA-AAVEVDVSASITLQV 70
Query: 244 IASGNPTPEISWYLDGKKLVNAER 267
+ W L
Sbjct: 71 LVDAPGNISCLWVFKHSSLNCQPH 94
Score = 51.2 bits (122), Expect = 1e-07
Identities = 8/97 (8%), Positives = 24/97 (24%), Gaps = 11/97 (11%)
Query: 14 PTFSSVSDIIRFKKPGGESFALLCEAQEN-----MWFKFIEGSSRKVAVPLNDRVKQVSG 68
++ + ++ E F + W + + P +
Sbjct: 325 GFINATNSSEDYEIDQYEEFCFSVRFKAYPQIRCTWTF------SRKSFPCEQKGLDNGY 378
Query: 69 TLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTVTAP 105
++ G+Y+ N + L + +
Sbjct: 379 SISKFCNHKHQPGEYIFHAENDDAQFTKMFTLNIRSG 415
>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein
complex, receptor tyrosine kinas binding, immunoglobulin
domain, kinase, membrane, nucleotid binding; HET: NAG;
2.10A {Homo sapiens}
Length = 241
Score = 123 bits (310), Expect = 2e-34
Identities = 29/136 (21%), Positives = 54/136 (39%), Gaps = 12/136 (8%)
Query: 139 VEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNEP----------VFRIDSV 188
++ + + +F C GNP +ISW+K+G+ + ++SV
Sbjct: 20 MDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESV 79
Query: 189 RKEDKGMYQCVIRNEQESAQASGELKLGGRFD--PPVIKESFSDETLNPGPNYYFKCIAS 246
D+G Y CV+ N+ S + + L + R P + +++T G + F C
Sbjct: 80 VPSDRGNYTCVVENKFGSIRQTYTLDVLERSPHRPILQAGLPANQTAVLGSDVEFHCKVY 139
Query: 247 GNPTPEISWYLDGKKL 262
+ P I W +
Sbjct: 140 SDAQPHIQWLKHVEVN 155
Score = 90.4 bits (224), Expect = 7e-22
Identities = 47/256 (18%), Positives = 70/256 (27%), Gaps = 63/256 (24%)
Query: 2 VGSDLKPVGFKAPTFSSVSDIIRFKKPGGESFALLCEAQEN-----MWFK---FIEGSSR 53
G D + P + P + C A N W K G R
Sbjct: 5 TGVDTGAPYWTRPERMDKKLLAV---PAANTVRFRCPAAGNPTPSISWLKNGREFRGEHR 61
Query: 54 KVAVPLNDRVKQVSGTLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTVTAPLAAGVEPT 113
+ +++ +L+++ D G Y CVV N G L V
Sbjct: 62 IGGI----KLRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLER-------- 109
Query: 114 VQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEGNPVKTISWMK--- 170
P+ P QT G +F CK + I W+K
Sbjct: 110 ----------------SPHRPILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVE 153
Query: 171 -DGKPVPDHNEPVF-----------------RIDSVRKEDKGMYQCVIRNEQESAQASGE 212
+G V P R+ +V + D G Y C N A+ +
Sbjct: 154 VNGSKVGPDGTPYVTVLKSWISESVEADVRLRLANVSERDGGEYLCRATNFIGVAEKAFW 213
Query: 213 LKLGGRFDPPVIKESF 228
L + P +E
Sbjct: 214 LSV---HGPRAAEEEL 226
Score = 45.7 bits (108), Expect = 5e-06
Identities = 14/50 (28%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
Query: 218 RFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNAER 267
+ P + + F+C A+GNPTP ISW +G++ R
Sbjct: 13 YWTRPERMDK-KLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHR 61
>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell
adhesion, transmembrane, disulfide bond, alternative
splicing; HET: NAG; 1.95A {Rattus norvegicus}
Length = 190
Score = 121 bits (306), Expect = 2e-34
Identities = 28/135 (20%), Positives = 46/135 (34%), Gaps = 10/135 (7%)
Query: 139 VEPTVQTIDFGRPAQFTCKYEGN--PVKTISWMKDGKPVP----DHNEPVFRIDSVRKED 192
V D P C + + W K+G + + + +RI+ R ED
Sbjct: 8 TSEEVIIRDSLLPVTLQCNLTSSSHTLMYSYWTKNGVELTATRKNASNMEYRINKPRAED 67
Query: 193 KGMYQCVIRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPE 252
G Y CV + + +A+ +++ P I E N G + C + G P PE
Sbjct: 68 SGEYHCVY-HFVSAPKANATIEV---KAAPDITGHKRSENKNEGQDAMMYCKSVGYPHPE 123
Query: 253 ISWYLDGKKLVNAER 267
W +
Sbjct: 124 WMWRKKENGVFEEIS 138
Score = 92.2 bits (229), Expect = 5e-23
Identities = 44/225 (19%), Positives = 62/225 (27%), Gaps = 63/225 (28%)
Query: 13 APTFSSVSDIIRFKKPGGESFALLCEAQ-------ENMWFKFIEGSSRKVAVPL-NDRVK 64
P + ++I L C + W K G V L R
Sbjct: 3 EPRIVTSEEVIIRDS--LLPVTLQCNLTSSSHTLMYSYWTK--NG------VELTATRKN 52
Query: 65 QVSGTLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQ 124
+ I + + EDSG+Y CV + V + V A P
Sbjct: 53 ASNMEYRINKPRAEDSGEYHCVYHF-VSAPKANATIEVKAA------P-----------D 94
Query: 125 FTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVP-------- 176
T + + G+ A CK G P W K V
Sbjct: 95 IT------------GHKRSENKNEGQDAMMYCKSVGYPHPEWMWRKKENGVFEEISNSSG 142
Query: 177 ------DHNEPVFRIDSVR-KEDKGMYQCVIRNEQESAQASGELK 214
N I +++ ED G Y+C N SA S L+
Sbjct: 143 RFFIINKENYTELNIVNLQITEDPGEYECNATNSIGSASVSTVLR 187
Score = 43.7 bits (103), Expect = 1e-05
Identities = 23/85 (27%), Positives = 35/85 (41%), Gaps = 15/85 (17%)
Query: 30 GESFALLCEAQEN-----MWFK-------FIEGSSRKVAVPLNDRVKQVSGTLIIKEAKV 77
G+ + C++ MW K I SS + + + ++ I+
Sbjct: 107 GQDAMMYCKSVGYPHPEWMWRKKENGVFEEISNSSGRFFIINKENYTEL---NIVNLQIT 163
Query: 78 EDSGKYLCVVNNSVGGESVETVLTV 102
ED G+Y C NS+G SV TVL V
Sbjct: 164 EDPGEYECNATNSIGSASVSTVLRV 188
Score = 41.4 bits (97), Expect = 7e-05
Identities = 7/50 (14%), Positives = 16/50 (32%), Gaps = 2/50 (4%)
Query: 220 DPPVIKESFSDETLNPGPNYYFKCIASGNPTPEIS--WYLDGKKLVNAER 267
+ P I S + +C + + + W +G +L +
Sbjct: 2 NEPRIVTSEEVIIRDSLLPVTLQCNLTSSSHTLMYSYWTKNGVELTATRK 51
>2va4_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; transmembrane,
phosphorylation, immunoglobulin domain, membrane,
glycoprotein; HET: NAG; 1.9A {Homo sapiens} PDB: 2xy1_A*
Length = 192
Score = 119 bits (301), Expect = 1e-33
Identities = 31/142 (21%), Positives = 54/142 (38%), Gaps = 11/142 (7%)
Query: 133 PPLAAGVEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPD-------HNEPVFRI 185
P ++ + T + G F+C+ G+P ISW ++GK + + + +
Sbjct: 3 PAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSNTELTV 62
Query: 186 DSVRKEDKGMYQCVIRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIA 245
++ D G Y C N+ + L++ F P I + ++ T C A
Sbjct: 63 RNIINSDGGPYVCRATNKAGEDEKQAFLQV---FVQPHIIQLKNETTY-ENGQVTLVCDA 118
Query: 246 SGNPTPEISWYLDGKKLVNAER 267
G P PEI+W E
Sbjct: 119 EGEPIPEITWKRAVDGFTFTEG 140
Score = 95.7 bits (238), Expect = 3e-24
Identities = 35/208 (16%), Positives = 55/208 (26%), Gaps = 61/208 (29%)
Query: 30 GESFALLCEAQEN-----MWFK---FIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSG 81
GE C A + WF+ IE + + +K + L ++ D G
Sbjct: 19 GEEMTFSCRASGSPEPAISWFRNGKLIEENEKY-------ILKGSNTELTVRNIINSDGG 71
Query: 82 KYLCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEP 141
Y+C N G + + L V P + ++
Sbjct: 72 PYVCRATNKAGEDEKQAFLQVFVQ------PHI------------------------IQL 101
Query: 142 TVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNEPVF----------------RI 185
+T C EG P+ I+W + I
Sbjct: 102 KNETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHI 161
Query: 186 DSVRKEDKGMYQCVIRNEQESAQASGEL 213
V+ D G Y C + Q S L
Sbjct: 162 KDVKLSDSGRYDCEAASRIGGHQKSMYL 189
Score = 50.6 bits (121), Expect = 6e-08
Identities = 18/83 (21%), Positives = 36/83 (43%), Gaps = 10/83 (12%)
Query: 30 GESFALLCEAQEN-----MWFKFIEG-----SSRKVAVPLNDRVKQVSGTLIIKEAKVED 79
L+C+A+ W + ++G + + + + + S +L IK+ K+ D
Sbjct: 109 NGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLSD 168
Query: 80 SGKYLCVVNNSVGGESVETVLTV 102
SG+Y C + +GG L +
Sbjct: 169 SGRYDCEAASRIGGHQKSMYLDI 191
>4dep_C Interleukin-1 receptor accessory protein; B-trefoil,
immunoglobulin, immune system, extracellular; HET: NAG;
3.10A {Homo sapiens} PDB: 3o4o_B*
Length = 349
Score = 123 bits (309), Expect = 2e-33
Identities = 39/274 (14%), Positives = 75/274 (27%), Gaps = 65/274 (23%)
Query: 30 GESFALLCEAQEN----------------MWFKFIEGSSRKVAVPLND---RVKQVSGTL 70
E + C E+ +W+ + + + R+ + L
Sbjct: 22 DEPARIKCPLFEHFLKFNYSTAHSAGLTLIWYWTRQDRDLEEPINFRLPENRISKEKDVL 81
Query: 71 IIKEAKVEDSGKYLCVVNNSVGGESVETVLTVTAPLAAGVE----PTVQTIDFGRPAQFT 126
+ + D+G Y C++ N+ V L V + P + + T
Sbjct: 82 WFRPTLLNDTGNYTCMLRNTTYCSKVAFPLEVVQKDSCFNSPMKLPVHKLYIEYGIQRIT 141
Query: 127 CKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNEPVF--- 183
C + + TI+W + + N +
Sbjct: 142 CPN------------------------VDGYFPSSVKPTITWYMGCYKIQNFNNVIPEGM 177
Query: 184 --RIDSVRKEDKGMYQCVIRNEQESAQ----ASGELKLGGR--FDPPVIKESFSDETL-- 233
+ G Y CV+ + + +K+ G P + S +D +
Sbjct: 178 NLSFLIALISNNGNYTCVVTYPENGRTFHLTRTLTVKVVGSPKNAVPPVIHSPNDHVVYE 237
Query: 234 -NPGPNYYFKCIA----SGNPTPEISWYLDGKKL 262
PG C + E+ W +DGKK
Sbjct: 238 KEPGEELLIPCTVYFSFLMDSRNEVWWTIDGKKP 271
Score = 76.8 bits (188), Expect = 2e-16
Identities = 33/196 (16%), Positives = 50/196 (25%), Gaps = 47/196 (23%)
Query: 44 WFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTVT 103
W+ + + V L A + ++G Y CVV G LT T
Sbjct: 159 WYMGCY------KIQNFNNVIPEGMNLSFLIALISNNGNYTCVVTYPENG--RTFHLTRT 210
Query: 104 APLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCK----YE 159
+ P I P + V + G C +
Sbjct: 211 LTVKVVGSPKNAVPPV-----------IHSPN----DHVVYEKEPGEELLIPCTVYFSFL 255
Query: 160 GNPVKTISWMKDGKPVPDHNEPVF-------------------RIDSVRKEDKG-MYQCV 199
+ + W DGK D V I V ED Y C
Sbjct: 256 MDSRNEVWWTIDGKKPDDITIDVTINESISHSRTEDETRTQILSIKKVTSEDLKRSYVCH 315
Query: 200 IRNEQESAQASGELKL 215
R+ + + ++K
Sbjct: 316 ARSAKGEVAKAAKVKQ 331
Score = 68.0 bits (165), Expect = 2e-13
Identities = 20/140 (14%), Positives = 37/140 (26%), Gaps = 20/140 (14%)
Query: 148 FGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNEPVFR--------------IDSVRKEDK 193
F +F + T+ W + FR D
Sbjct: 32 FEHFLKFNYSTAHSAGLTLIWYWTRQDRDLEEPINFRLPENRISKEKDVLWFRPTLLNDT 91
Query: 194 GMYQCVIRNEQESAQASGELKLGGRFDPPVIKESF-SDETLNPGPNYYFKCI-----ASG 247
G Y C++RN ++ + L++ + + C
Sbjct: 92 GNYTCMLRNTTYCSKVAFPLEVVQKDSCFNSPMKLPVHKLYIEYGIQRITCPNVDGYFPS 151
Query: 248 NPTPEISWYLDGKKLVNAER 267
+ P I+WY+ K+ N
Sbjct: 152 SVKPTITWYMGCYKIQNFNN 171
Score = 41.8 bits (97), Expect = 1e-04
Identities = 24/132 (18%), Positives = 41/132 (31%), Gaps = 25/132 (18%)
Query: 7 KPVGFKAPTFSSVSDIIRFKKPGGESFALLCEAQ---------ENMWFK---FIEGSSRK 54
P P S +D + ++K GE + C E W + +
Sbjct: 218 SPKNAVPPVIHSPNDHVVYEKEPGEELLIPCTVYFSFLMDSRNEVWWTIDGKKPDDITID 277
Query: 55 VAVPLNDRVKQ-----VSGTLIIKEAKVED-SGKYLCVVNNSVGGESVETVLTVTAP--- 105
V + + + + L IK+ ED Y+C ++ G + + P
Sbjct: 278 VTINESISHSRTEDETRTQILSIKKVTSEDLKRSYVCHARSAKGEVAKAAKVKQKVPAPR 337
Query: 106 ----LAAGVEPT 113
LA G T
Sbjct: 338 YTVELACGFGAT 349
>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth
factor-receptor complex, receptor tyrosine kinase, CY
4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus
musculus}
Length = 289
Score = 118 bits (297), Expect = 4e-32
Identities = 41/249 (16%), Positives = 67/249 (26%), Gaps = 46/249 (18%)
Query: 30 GESFALLCEAQENM-WFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYLCVVN 88
GE+ L C + ++ W ++ + TL + A +++G Y C
Sbjct: 19 GETVTLRCVSNGSVEWDG-------PISPYWTLDPESPGSTLTTRNATFKNTGTYRCTEL 71
Query: 89 NSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDF 148
S L V P + + T+
Sbjct: 72 EDPMAGSTTIHLYVKDP----------------AHSWN------------LLAQEVTVVE 103
Query: 149 GRPAQFTCKYEGNPVK-TISWMKDGKPVPDHNEPV-------FRIDSVRKEDKGMYQCVI 200
G+ A C +K ++S M++G F I + D Y C
Sbjct: 104 GQEAVLPCLITDPALKDSVSLMREGGRQVLRKTVYFFSPWRGFIIRKAKVLDSNTYVCKT 163
Query: 201 RNE-QESAQASGELKLGGRF-DPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLD 258
+ES LK+ +PP IK S G C A+
Sbjct: 164 MVNGRESTSTGIWLKVNRVHPEPPQIKLEPSKLVRIRGEAAQIVCSATNAEVGFNVILKR 223
Query: 259 GKKLVNAER 267
G +
Sbjct: 224 GDTKLEIPL 232
Score = 86.2 bits (213), Expect = 5e-20
Identities = 39/215 (18%), Positives = 65/215 (30%), Gaps = 53/215 (24%)
Query: 30 GESFALLCEAQEN------MWFKFIEGSSRKVAVPLNDRVKQVS--GTLIIKEAKVEDSG 81
G+ L C + + EG L V S II++AKV DS
Sbjct: 104 GQEAVLPCLITDPALKDSVSLMR--EGGR----QVLRKTVYFFSPWRGFIIRKAKVLDSN 157
Query: 82 KYLCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEP 141
Y+C + G ES T + + P ++ +EP
Sbjct: 158 TYVCKTMVN-GRESTSTGIWLKVNRVHPEPPQIK-----------------------LEP 193
Query: 142 TVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNEPVF------------RIDSVR 189
+ G AQ C V +K G + +++V
Sbjct: 194 SKLVRIRGEAAQIVCSATNAEVGFNVILKRGDTKLEIPLNSDFQDNYYKKVRALSLNAVD 253
Query: 190 KEDKGMYQCVIRNEQESAQASGELKLGGRFDPPVI 224
+D G+Y CV N+ + A+ ++ +
Sbjct: 254 FQDAGIYSCVASNDVGTRTATMNFQV---VESHHH 285
Score = 39.2 bits (91), Expect = 7e-04
Identities = 9/46 (19%), Positives = 18/46 (39%), Gaps = 4/46 (8%)
Query: 221 PPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNAE 266
PVI+ S + + PG +C+++G + W +
Sbjct: 4 APVIEPSGPELVVEPGETVTLRCVSNG----SVEWDGPISPYWTLD 45
>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif,
immunoglobulin-like domain, growth facto factor
receptor, extracellular; 2.10A {Homo sapiens} PDB:
1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E
1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C
Length = 231
Score = 116 bits (291), Expect = 9e-32
Identities = 32/136 (23%), Positives = 53/136 (38%), Gaps = 12/136 (8%)
Query: 139 VEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNEP----------VFRIDSV 188
+E + + +F C GNP+ T+ W+K+GK + ++SV
Sbjct: 24 MEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESV 83
Query: 189 RKEDKGMYQCVIRNEQESAQASGELKLGGR--FDPPVIKESFSDETLNPGPNYYFKCIAS 246
DKG Y CV+ NE S + L + R P + ++ + G + F C
Sbjct: 84 VPSDKGNYTCVVENEYGSINHTYHLDVVERSRHRPILQAGLPANASTVVGGDVEFVCKVY 143
Query: 247 GNPTPEISWYLDGKKL 262
+ P I W +K
Sbjct: 144 SDAQPHIQWIKHVEKN 159
Score = 93.0 bits (231), Expect = 5e-23
Identities = 44/256 (17%), Positives = 73/256 (28%), Gaps = 60/256 (23%)
Query: 1 MVGSDLKPVGFKAPTFSSVSDIIR--FKKPGGESFALLCEAQEN-----MWFK---FIEG 50
V + +AP +++ + + P + C A N W K +
Sbjct: 5 FVSENSNNK--RAPYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQ 62
Query: 51 SSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTVTAPLAAGV 110
R +V+ +LI++ D G Y CVV N G + L V
Sbjct: 63 EHRIGGY----KVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVVER----- 113
Query: 111 EPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEGNPVKTISWMK 170
P+ P + G +F CK + I W+K
Sbjct: 114 -------------------SRHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIK 154
Query: 171 DGKPVPDHNEP--------------------VFRIDSVRKEDKGMYQCVIRNEQESAQAS 210
+ P V + +V + D G Y C + N A S
Sbjct: 155 HVEKNGSKYGPDGLPYLKVLKHSGINSSNAEVLALFNVTEADAGEYICKVSNYIGQANQS 214
Query: 211 GELKLGGRFDPPVIKE 226
L + + P ++
Sbjct: 215 AWLTVLPKQQAPGREK 230
Score = 46.0 bits (109), Expect = 3e-06
Identities = 12/51 (23%), Positives = 18/51 (35%), Gaps = 4/51 (7%)
Query: 221 PPVIKESF----SDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNAER 267
P + + F+C A GNP P + W +GK+ R
Sbjct: 15 APYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHR 65
>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical
bundle cytokine, hematopoietic cytokine-receptor
complex, cell surface, EXTR complex; 7.80A {Homo
sapiens}
Length = 527
Score = 119 bits (300), Expect = 4e-31
Identities = 33/242 (13%), Positives = 60/242 (24%), Gaps = 56/242 (23%)
Query: 30 GESFALLCEAQEN------MWFK----FIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVED 79
GE + C+A W EG+ +++ +R + D
Sbjct: 242 GEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARND 301
Query: 80 SGKYLCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGV 139
+G Y C + ++T+ + A
Sbjct: 302 TGYYTCSSSKHPS---QSALVTIVEK---------------------------GFINATN 331
Query: 140 EPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNEPVF-----RIDSVRKEDKG 194
ID F+ +++ P +W K P + + K G
Sbjct: 332 SSEDYEIDQYEEFCFSVRFKAYPQIRCTWTFSRKSFPCEQKGLDNGYSISKFCNHKHQPG 391
Query: 195 MYQCVIRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEIS 254
Y N+ L + P + S + C + G P P +
Sbjct: 392 EYIFHAENDDAQFTKMFTLNI---RRKPQVLAEASASQAS--------CFSDGYPLPSWT 440
Query: 255 WY 256
W
Sbjct: 441 WK 442
Score = 115 bits (289), Expect = 1e-29
Identities = 31/249 (12%), Positives = 62/249 (24%), Gaps = 48/249 (19%)
Query: 30 GESFALLCEAQEN-----MWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYL 84
S L +W S P D + +++I + +G+YL
Sbjct: 63 SASITLQVLVDAPGNISCLWVF---KHSSLNCQPHFDLQNRGVVSMVILKMTETQAGEYL 119
Query: 85 CVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQ 144
+ + ++ +++ L + + A
Sbjct: 120 LFIQSEATNYTILFTVSIRNTLLYTLRRPYFRKMENQDA--------------------- 158
Query: 145 TIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNEPVFRIDS-----VRKEDKGMYQCV 199
C E P + W+ E + + + +C
Sbjct: 159 ---------LVCISESVPEPIVEWVLCDSQGESCKEESPAVVKKEEKVLHELFGTDIRCC 209
Query: 200 IRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASG-NPTPEISWYLD 258
RNE + + P + L G + +C A N ++W L+
Sbjct: 210 ARNELGREC-TRLFTIDLNQTPQT---TLPQLFLKVGEPLWIRCKAVHVNHGFGLTWELE 265
Query: 259 GKKLVNAER 267
K L
Sbjct: 266 NKALEEGNY 274
Score = 110 bits (275), Expect = 1e-27
Identities = 22/199 (11%), Positives = 46/199 (23%), Gaps = 45/199 (22%)
Query: 72 IKEAKVEDSGKYLCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEI 131
++ V S Y V + E + L + TV
Sbjct: 19 NNDSSVGKSSSYPMVSESP---EDLGCALRPQSS------GTV----------------- 52
Query: 132 SPPLAAGVEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVP--------DHNEPVF 183
E +D + + W+ + +
Sbjct: 53 -------YEAAAVEVDVSASITLQVLVDAPGNISCLWVFKHSSLNCQPHFDLQNRGVVSM 105
Query: 184 RIDSVRKEDKGMYQCVIRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKC 243
I + + G Y I++E + + + + + + C
Sbjct: 106 VILKMTETQAGEYLLFIQSEATNYTILFTVSI---RNTLLYTLRRPYFRKMENQD-ALVC 161
Query: 244 IASGNPTPEISWYLDGKKL 262
I+ P P + W L +
Sbjct: 162 ISESVPEPIVEWVLCDSQG 180
Score = 90.1 bits (223), Expect = 9e-21
Identities = 34/277 (12%), Positives = 62/277 (22%), Gaps = 66/277 (23%)
Query: 13 APTFSSVSDIIRFKKPGGESFALLCEAQEN-----MWFKFIEGSSRKVAVPLNDRVKQVS 67
++ R + AL+C ++ W S +
Sbjct: 140 TLLYTLRRPYFRKME---NQDALVCISESVPEPIVEWVL--CDSQGES-CKEESPAVVKK 193
Query: 68 GTLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTC 127
++ E C N G + T+ + G P C
Sbjct: 194 EEKVLHE---LFGTDIRCCARNE-LGRECTRLFTIDLNQTPQTTLPQLFLKVGEPLWIRC 249
Query: 128 KYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNEPVFR--- 184
K A V ++W + K + + N
Sbjct: 250 K-------AVHVNHGF---------------------GLTWELENKALEEGNYFEMSTYS 281
Query: 185 ------------IDSVRKEDKGMYQCVIRNEQESAQASGELKLGGRFDPPVIK--ESFSD 230
+ SV + D G Y C S + + + I S D
Sbjct: 282 TNRTMIRILFAFVSSVARNDTGYYTCSSSKH---PSQSALVTI---VEKGFINATNSSED 335
Query: 231 ETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNAER 267
++ + F P +W K ++
Sbjct: 336 YEIDQYEEFCFSVRFKAYPQIRCTWTFSRKSFPCEQK 372
Score = 79.7 bits (196), Expect = 4e-17
Identities = 24/231 (10%), Positives = 54/231 (23%), Gaps = 70/231 (30%)
Query: 30 GESFALLCEAQEN-----MWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYL 84
E F + W + + P + ++ G+Y+
Sbjct: 341 YEEFCFSVRFKAYPQIRCTWTF------SRKSFPCEQKGLDNGYSISKFCNHKHQPGEYI 394
Query: 85 CVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQ 144
N + L + P Q
Sbjct: 395 FHAENDDAQFTKMFTLNI----------------------------RRKP---------Q 417
Query: 145 TIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNEPVF--------------------R 184
+ +Q +C +G P+ + +W K P+ E +
Sbjct: 418 VLAEASASQASCFSDGYPLPSWTWKKCSDKSPNCTEEITEGVWNRKANRKVFGQWVSSST 477
Query: 185 IDSVRKEDKGMYQCVIRNEQESAQASGELKLGGRFDPPVIKESFSDETLNP 235
++ + +C N ++ + L G P I++ + +
Sbjct: 478 LNMSEAIKGFLVKCCAYNSLGTSCETILLNSPGP--FPFIQDGGTKHHHHH 526
Score = 51.6 bits (123), Expect = 8e-08
Identities = 8/93 (8%), Positives = 24/93 (25%), Gaps = 13/93 (13%)
Query: 188 VRKEDKGMYQCVIRNEQES-------------AQASGELKLGGRFDPPVIKESFSDETLN 234
+D + +CV+ N + + +++ +L R + ++
Sbjct: 2 TGNQDLPVIKCVLINHKNNDSSVGKSSSYPMVSESPEDLGCALRPQSSGTVYEAAAVEVD 61
Query: 235 PGPNYYFKCIASGNPTPEISWYLDGKKLVNAER 267
+ + + W L
Sbjct: 62 VSASITLQVLVDAPGNISCLWVFKHSSLNCQPH 94
>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix
bundle cytokine, receptor tyrosine kinase glycosylation;
HET: NAG BMA; 3.00A {Homo sapiens}
Length = 292
Score = 115 bits (289), Expect = 7e-31
Identities = 36/249 (14%), Positives = 62/249 (24%), Gaps = 46/249 (18%)
Query: 30 GESFALLCEAQENM-WFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYLCVVN 88
G + L C ++ W + S L A +++G Y C
Sbjct: 19 GATVTLRCVGNGSVEW-------DGPPSPHWTLYSDGSSSILSTNNATFQNTGTYRCTEP 71
Query: 89 NSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDF 148
G S L V P + V +
Sbjct: 72 GDPLGGSAAIHLYVKDP----------------ARPWN------------VLAQEVVVFE 103
Query: 149 GRPAQFTCKYEGNPVK-TISWMK-DGKPVPDHNEPV------FRIDSVRKEDKGMYQCVI 200
+ A C ++ +S ++ G+P+ H F I + YQC
Sbjct: 104 DQDALLPCLLTDPVLEAGVSLVRVRGRPLMRHTNYSFSPWHGFTIHRAKFIQSQDYQCSA 163
Query: 201 RNE-QESAQASGELK-LGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLD 258
++ S LK PP + ++ G C AS +
Sbjct: 164 LMGGRKVMSISIRLKVQKVIPGPPALTLVPAELVRIRGEAAQIVCSASSVDVNFDVFLQH 223
Query: 259 GKKLVNAER 267
+ +
Sbjct: 224 NNTKLAIPQ 232
Score = 80.0 bits (197), Expect = 8e-18
Identities = 27/203 (13%), Positives = 46/203 (22%), Gaps = 46/203 (22%)
Query: 30 GESFALLCEA-----QENMWFKFIEGSSRKVAVPLNDRVKQVS-GTLIIKEAKVEDSGKY 83
+ L C + + + G + + I AK S Y
Sbjct: 104 DQDALLPCLLTDPVLEAGVSLVRVRGRP----LMRHTNYSFSPWHGFTIHRAKFIQSQDY 159
Query: 84 LCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTV 143
C G + + + + P + + P
Sbjct: 160 QCSALMG-GRKVMSISIRLKVQKVIPGPPALT-----------------------LVPAE 195
Query: 144 QTIDFGRPAQFTCKYEGNPV-KTISWMKDGKPVPDHNEPVF-----------RIDSVRKE 191
G AQ C V + + + + F +D V +
Sbjct: 196 LVRIRGEAAQIVCSASSVDVNFDVFLQHNNTKLAIPQQSDFHNNRYQKVLTLNLDQVDFQ 255
Query: 192 DKGMYQCVIRNEQESAQASGELK 214
G Y CV N Q S +
Sbjct: 256 HAGNYSCVASNVQGKHSTSMFFR 278
Score = 73.8 bits (181), Expect = 1e-15
Identities = 15/135 (11%), Positives = 37/135 (27%), Gaps = 12/135 (8%)
Query: 139 VEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKP----VPDHNEPVFRIDSVRKEDKG 194
+ G C G ++ W P D + + ++ ++ G
Sbjct: 9 PSVPELVVKPGATVTLRCVGNG----SVEWDGPPSPHWTLYSDGSSSILSTNNATFQNTG 64
Query: 195 MYQCVIRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASG-NPTPEI 253
Y+C + A+ L + + + + C+ + +
Sbjct: 65 TYRCTEPGDPLGGSAAIHLYVKDP--ARPWNVLAQEVVVFEDQDALLPCLLTDPVLEAGV 122
Query: 254 SWY-LDGKKLVNAER 267
S + G+ L+
Sbjct: 123 SLVRVRGRPLMRHTN 137
Score = 57.3 bits (138), Expect = 8e-10
Identities = 15/82 (18%), Positives = 26/82 (31%), Gaps = 6/82 (7%)
Query: 30 GESFALLCEAQEN------MWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKY 83
GE+ ++C A + ++ Q TL + + + +G Y
Sbjct: 201 GEAAQIVCSASSVDVNFDVFLQHNNTKLAIPQQSDFHNNRYQKVLTLNLDQVDFQHAGNY 260
Query: 84 LCVVNNSVGGESVETVLTVTAP 105
CV +N G S V
Sbjct: 261 SCVASNVQGKHSTSMFFRVVES 282
Score = 36.9 bits (85), Expect = 0.004
Identities = 13/46 (28%), Positives = 21/46 (45%), Gaps = 6/46 (13%)
Query: 221 PPVIKESFSDETLNPGPNYYFKCIASG------NPTPEISWYLDGK 260
PVI+ S + + PG +C+ +G P+P + Y DG
Sbjct: 4 IPVIEPSVPELVVKPGATVTLRCVGNGSVEWDGPPSPHWTLYSDGS 49
>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI
cardiomyopathy, disease mutation, disulfide bond,
immunoglo domain, isopeptide bond; 2.50A {Homo sapiens}
Length = 197
Score = 107 bits (270), Expect = 5e-29
Identities = 33/140 (23%), Positives = 52/140 (37%), Gaps = 15/140 (10%)
Query: 140 EPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVP---------DHNEPVFRIDSVRK 190
E T G AQ +C+ G P+ I W + GK + D + + +
Sbjct: 13 EMKDVTTKLGEAAQLSCQIVGRPLPDIKWYRFGKELIQSRKYKMSSDGRTHTLTVMTEEQ 72
Query: 191 EDKGMYQCVIRNEQESAQASGELKLGGRFDPPVIKESF---SDETLNPGPNYYFKCIASG 247
ED+G+Y C+ NE + S +L L P + G + G
Sbjct: 73 EDEGVYTCIATNEVGEVETSSKLLL---QATPQFHPGYPLKEKYYGAVGSTLRLHVMYIG 129
Query: 248 NPTPEISWYLDGKKLVNAER 267
P P ++W+ K L N+E
Sbjct: 130 RPVPAMTWFHGQKLLQNSEN 149
Score = 94.0 bits (234), Expect = 9e-24
Identities = 39/226 (17%), Positives = 68/226 (30%), Gaps = 55/226 (24%)
Query: 9 VGFKAPTFSSV-SDIIRFKKPGGESFALLCEAQEN-----MWFKFIEGSSRKVAVPLNDR 62
+ +AP D+ GE+ L C+ W++ G + + +
Sbjct: 3 MSGEAPGIRKEMKDVTTKL---GEAAQLSCQIVGRPLPDIKWYR--FG----KELIQSRK 53
Query: 63 VKQVS----GTLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTID 118
K S TL + + ED G Y C+ N VG + L + A P
Sbjct: 54 YKMSSDGRTHTLTVMTEEQEDEGVYTCIATNEVGEVETSSKLLLQAT------P------ 101
Query: 119 FGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVP-- 176
+ P G + Y G PV ++W K +
Sbjct: 102 -----------QFHPGY---PLKEKYYGAVGSTLRLHVMYIGRPVPAMTWFHGQKLLQNS 147
Query: 177 -------DHNEPVFRIDSV-RKEDKGMYQCVIRNEQESAQASGELK 214
+ + +V RK G Y+ + N + A +++
Sbjct: 148 ENITIENTEHYTHLVMKNVQRKTHAGKYKVQLSNVFGTVDAILDVE 193
Score = 57.4 bits (139), Expect = 3e-10
Identities = 15/47 (31%), Positives = 22/47 (46%)
Query: 221 PPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNAER 267
P I++ D T G C G P P+I WY GK+L+ + +
Sbjct: 7 APGIRKEMKDVTTKLGEAAQLSCQIVGRPLPDIKWYRFGKELIQSRK 53
Score = 39.3 bits (92), Expect = 5e-04
Identities = 11/84 (13%), Positives = 25/84 (29%), Gaps = 16/84 (19%)
Query: 30 GESFALLCEAQEN-----MWFKFIEGSSRKVAVPLNDRVKQVS----GTLIIKEA-KVED 79
G + L WF + ++ + + L++K +
Sbjct: 118 GSTLRLHVMYIGRPVPAMTWFH--GQK----LLQNSENITIENTEHYTHLVMKNVQRKTH 171
Query: 80 SGKYLCVVNNSVGGESVETVLTVT 103
+GKY ++N G + +
Sbjct: 172 AGKYKVQLSNVFGTVDAILDVEIQ 195
>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion
comple adhesion; HET: NAG; 2.30A {Homo sapiens}
Length = 201
Score = 107 bits (269), Expect = 8e-29
Identities = 42/198 (21%), Positives = 72/198 (36%), Gaps = 37/198 (18%)
Query: 30 GESFALLCEAQEN-------MWFKFIEGSSRKVAVPLNDR--VKQVSGTLIIKEAKVEDS 80
G+ LLC+ + W + V + ++ R V Q +G L I + D
Sbjct: 23 GKGMVLLCDPPYHFPDDLSYRWLL----NEFPVFITMDKRRFVSQTNGNLYIANVEASDK 78
Query: 81 GKYLCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVE 140
G Y C V++ +SV + + P + PA V+
Sbjct: 79 GNYSCFVSSPSITKSVFSKFIP-------LIPIPERTTKPYPADIV------------VQ 119
Query: 141 PTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPD-----HNEPVFRIDSVRKEDKGM 195
G+ C GNPV I W K +P+P + V +I +++ ED+G+
Sbjct: 120 FKDVYALMGQNVTLECFALGNPVPDIRWRKVLEPMPSTAEISTSGAVLKIFNIQLEDEGI 179
Query: 196 YQCVIRNEQESAQASGEL 213
Y+C N + + +
Sbjct: 180 YECEAENIRGKDKHQARI 197
Score = 99.2 bits (247), Expect = 1e-25
Identities = 28/146 (19%), Positives = 48/146 (32%), Gaps = 18/146 (12%)
Query: 140 EPTVQTIDFGRPAQFTCKYEGNPVK--TISWMKDGKPVP-DHNEPVF--------RIDSV 188
E + G+ C + + W+ + PV ++ F I +V
Sbjct: 14 ERPEVRVKEGKGMVLLCDPPYHFPDDLSYRWLLNEFPVFITMDKRRFVSQTNGNLYIANV 73
Query: 189 RKEDKGMYQCVIRNEQESAQASGEL-------KLGGRFDPPVIKESFSDETLNPGPNYYF 241
DKG Y C + + + + + + P I F D G N
Sbjct: 74 EASDKGNYSCFVSSPSITKSVFSKFIPLIPIPERTTKPYPADIVVQFKDVYALMGQNVTL 133
Query: 242 KCIASGNPTPEISWYLDGKKLVNAER 267
+C A GNP P+I W + + +
Sbjct: 134 ECFALGNPVPDIRWRKVLEPMPSTAE 159
Score = 56.0 bits (135), Expect = 8e-10
Identities = 19/80 (23%), Positives = 28/80 (35%), Gaps = 11/80 (13%)
Query: 30 GESFALLCEAQEN-----MWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYL 84
G++ L C A N W K +P + L I ++ED G Y
Sbjct: 128 GQNVTLECFALGNPVPDIRWRK--VLEP----MPSTAEISTSGAVLKIFNIQLEDEGIYE 181
Query: 85 CVVNNSVGGESVETVLTVTA 104
C N G + + + V A
Sbjct: 182 CEAENIRGKDKHQARIYVQA 201
>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein,
serine/threonine-protein KI LIMB-girdle muscular
dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB:
2j8o_A 2ill_A
Length = 197
Score = 107 bits (268), Expect = 1e-28
Identities = 29/141 (20%), Positives = 44/141 (31%), Gaps = 13/141 (9%)
Query: 140 EPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPV-----------PDHNEPVFRIDSV 188
E + + A CK G+P + W + GK + I SV
Sbjct: 10 ELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASV 69
Query: 189 RKEDKGMYQCVIRNEQESAQASGEL--KLGGRFDPPVIKESFSDETLNPGPNYYFKCIAS 246
+D +YQ N+ S + L ++ + P E G K S
Sbjct: 70 TDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVSIKIPFS 129
Query: 247 GNPTPEISWYLDGKKLVNAER 267
G P P I+W + N
Sbjct: 130 GKPDPVITWQKGQDLIDNNGH 150
Score = 94.8 bits (236), Expect = 6e-24
Identities = 29/204 (14%), Positives = 49/204 (24%), Gaps = 49/204 (24%)
Query: 30 GESFALLCEAQ-----ENMWFK-----FIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVED 79
+ L+C+ W++ +G ++ LII +D
Sbjct: 19 QSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGG-----YHQLIIASVTDDD 73
Query: 80 SGKYLCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGV 139
+ Y N G S L V P +
Sbjct: 74 ATVYQVRATNQGGSVSGTASLEVEVP------AKIHLPKTLEG----------------- 110
Query: 140 EPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVP----------DHNEPVFRIDSVR 189
G + G P I+W K + + + V
Sbjct: 111 -MGAVHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVE 169
Query: 190 KEDKGMYQCVIRNEQESAQASGEL 213
++D G Y +N Q + EL
Sbjct: 170 RKDAGFYVVCAKNRFGIDQKTVEL 193
Score = 50.1 bits (120), Expect = 9e-08
Identities = 12/47 (25%), Positives = 20/47 (42%)
Query: 221 PPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNAER 267
P KE + + N C +G+P P + WY GK+++
Sbjct: 4 APHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGL 50
Score = 41.2 bits (97), Expect = 9e-05
Identities = 14/108 (12%), Positives = 27/108 (25%), Gaps = 18/108 (16%)
Query: 6 LKPVGFKAPTFSSVSDIIRFKKPGGESFALLCEAQEN-----MWFKFIEGSSRKVAVPLN 60
P P + + GE ++ W K + N
Sbjct: 97 EVPAKIHLPKTLEGMGAVHALR--GEVVSIKIPFSGKPDPVITWQK--GQ----DLIDNN 148
Query: 61 DRVKQVSG-----TLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTVT 103
+ + + + +D+G Y+ N G + L V
Sbjct: 149 GHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVELDVA 196
>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation,
immunoglobulin domain, membrane, glycoprote adhesion,
transmembrane; HET: NAG; 2.00A {Homo sapiens}
Length = 189
Score = 106 bits (266), Expect = 2e-28
Identities = 38/215 (17%), Positives = 69/215 (32%), Gaps = 44/215 (20%)
Query: 13 APTFSSVSDIIRFKKPGGESFALLCEAQEN-----MWFKFIEGSSRKVAVPLNDRVKQVS 67
TF V FK+ GE ++C + W +V ++R ++
Sbjct: 2 MLTFREVVSPQEFKQ--GEDAEVVCRVSSSPAPAVSWLY--HN--EEVTTISDNRFAMLA 55
Query: 68 -GTLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFT 126
L I D G Y C GE + V
Sbjct: 56 NNNLQILNINKSDEGIYRCEGRVEARGEIDFRDIIVI----------------------- 92
Query: 127 CKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNEPVF--- 183
+ P ++ + T + G F+C+ G+P ISW ++GK + ++ + +
Sbjct: 93 --VNVPPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGS 150
Query: 184 ----RIDSVRKEDKGMYQCVIRNEQESAQASGELK 214
+ ++ D G Y C N+ + L+
Sbjct: 151 NTELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQ 185
Score = 102 bits (256), Expect = 4e-27
Identities = 35/139 (25%), Positives = 59/139 (42%), Gaps = 11/139 (7%)
Query: 139 VEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNEPVFR--------IDSVRK 190
+ Q G A+ C+ +P +SW+ + V ++ F I ++ K
Sbjct: 7 EVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNNLQILNINK 66
Query: 191 EDKGMYQCVIRNEQESAQASGELKLGGRFDPPVIK--ESFSDETLNPGPNYYFKCIASGN 248
D+G+Y+C R E ++ + PP I + + T G F C ASG+
Sbjct: 67 SDEGIYRCEGRVEARGEIDFRDIIVIVNV-PPAISMPQKSFNATAERGEEMTFSCRASGS 125
Query: 249 PTPEISWYLDGKKLVNAER 267
P P ISW+ +GK + E+
Sbjct: 126 PEPAISWFRNGKLIEENEK 144
Score = 50.9 bits (122), Expect = 5e-08
Identities = 9/45 (20%), Positives = 17/45 (37%)
Query: 221 PPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNA 265
+E S + G + C S +P P +SW +++
Sbjct: 2 MLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTI 46
Score = 47.9 bits (114), Expect = 5e-07
Identities = 17/82 (20%), Positives = 28/82 (34%), Gaps = 13/82 (15%)
Query: 30 GESFALLCEAQEN-----MWFKFIEGSSRKVAVPLNDRVKQV--SGTLIIKEAKVEDSGK 82
GE C A + WF+ G + N++ + L ++ D G
Sbjct: 113 GEEMTFSCRASGSPEPAISWFR--NG----KLIEENEKYILKGSNTELTVRNIINSDGGP 166
Query: 83 YLCVVNNSVGGESVETVLTVTA 104
Y+C N G + + L V
Sbjct: 167 YVCRATNKAGEDEKQAFLQVFV 188
>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling
protein,transferase; 2.21A {Rattus norvegicus}
Length = 192
Score = 104 bits (262), Expect = 7e-28
Identities = 30/138 (21%), Positives = 44/138 (31%), Gaps = 12/138 (8%)
Query: 139 VEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNE--------PVFRIDSVRK 190
A F C E P ISW ++ + + + I SV
Sbjct: 12 TPLETVDALVEEVATFMCAVESYPQPEISWTRNKILIKLFDTRYSIRENGQLLTILSVED 71
Query: 191 EDKGMYQCVIRNE-QESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNP 249
D G+Y C N + ++ G L++ P I + + G C GNP
Sbjct: 72 SDDGIYCCTANNGVGGAVESCGALQV---KMKPKITRPPINVKIIEGLKAVLPCTTMGNP 128
Query: 250 TPEISWYLDGKKLVNAER 267
P +SW L R
Sbjct: 129 KPSVSWIKGDSALRENSR 146
Score = 91.3 bits (227), Expect = 1e-22
Identities = 43/196 (21%), Positives = 63/196 (32%), Gaps = 50/196 (25%)
Query: 30 GESFALLCEAQEN-----MWFK---FIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSG 81
E +C + W + I+ + ++ N L I + D G
Sbjct: 22 EEVATFMCAVESYPQPEISWTRNKILIKLFDTRYSIRENG------QLLTILSVEDSDDG 75
Query: 82 KYLCVVNNSVGG-ESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVE 140
Y C NN VGG L V P + T
Sbjct: 76 IYCCTANNGVGGAVESCGALQVKMK------P-----------KIT------------RP 106
Query: 141 PTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPD------HNEPVFRIDSVRKEDKG 194
P I G A C GNP ++SW+K + + RI +V+KED G
Sbjct: 107 PINVKIIEGLKAVLPCTTMGNPKPSVSWIKGDSALRENSRIAVLESGSLRIHNVQKEDAG 166
Query: 195 MYQCVIRNEQESAQAS 210
Y+CV +N +A +
Sbjct: 167 QYRCVAKNSLGTAYSK 182
Score = 51.7 bits (124), Expect = 3e-08
Identities = 25/83 (30%), Positives = 34/83 (40%), Gaps = 13/83 (15%)
Query: 30 GESFALLCEAQEN-----MWFKFIEGSSRKVAVPLNDRVKQV-SGTLIIKEAKVEDSGKY 83
G L C N W K S+ + N R+ + SG+L I + ED+G+Y
Sbjct: 115 GLKAVLPCTTMGNPKPSVSWIK--GDSA----LRENSRIAVLESGSLRIHNVQKEDAGQY 168
Query: 84 LCVVNNSVG-GESVETVLTVTAP 105
CV NS+G S L V
Sbjct: 169 RCVAKNSLGTAYSKLVKLEVEVF 191
Score = 50.1 bits (120), Expect = 9e-08
Identities = 11/47 (23%), Positives = 14/47 (29%)
Query: 221 PPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNAER 267
PVI F C P PEISW + + +
Sbjct: 7 APVITTPLETVDALVEEVATFMCAVESYPQPEISWTRNKILIKLFDT 53
>2v44_A NCAM2, neural cell adhesion molecule 2; phosphorylation,
immunoglobulin domain, IG, membrane, homphilic,
glycoprotein, transmembrane; 1.77A {Homo sapiens} PDB:
2xy2_A* 2vaj_A
Length = 189
Score = 104 bits (262), Expect = 7e-28
Identities = 25/139 (17%), Positives = 48/139 (34%), Gaps = 13/139 (9%)
Query: 139 VEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNE---------PVFRIDSVR 189
+ + + G FTC G P + G+ + I +
Sbjct: 7 ISLSKVELSVGESKFFTCTAIGEPESIDWYNPQGEKIISTQRVVVQKEGVRSRLTIYNAN 66
Query: 190 KEDKGMYQCVIRNEQESAQ-ASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGN 248
ED G+Y+C + + Q A+ L++ + +E S + G + C S +
Sbjct: 67 IEDAGIYRCQATDAKGQTQEATVVLEI---YQKLTFREVVSPQEFKQGEDAEVVCRVSSS 123
Query: 249 PTPEISWYLDGKKLVNAER 267
P P +SW +++
Sbjct: 124 PAPAVSWLYHNEEVTTISD 142
Score = 101 bits (253), Expect = 1e-26
Identities = 38/204 (18%), Positives = 66/204 (32%), Gaps = 53/204 (25%)
Query: 30 GESFALLCEAQ-----ENMWFKFIEGSSRKVAVPLNDRVKQ----VSGTLIIKEAKVEDS 80
GES C A + + + + RV V L I A +ED+
Sbjct: 17 GESKFFTCTAIGEPESIDWYNP------QGEKIISTQRVVVQKEGVRSRLTIYNANIEDA 70
Query: 81 GKYLCVVNNSVGG-ESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGV 139
G Y C ++ G + VL + L F
Sbjct: 71 GIYRCQATDAKGQTQEATVVLEIYQKL-----------------TFR------------E 101
Query: 140 EPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNEPVF--------RIDSVRKE 191
+ Q G A+ C+ +P +SW+ + V ++ F +I ++ K
Sbjct: 102 VVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNNLQILNINKS 161
Query: 192 DKGMYQCVIRNEQESAQASGELKL 215
D+G+Y+C R E ++ +
Sbjct: 162 DEGIYRCEGRVEARGEIDFRDIIV 185
Score = 50.9 bits (122), Expect = 4e-08
Identities = 20/99 (20%), Positives = 33/99 (33%), Gaps = 12/99 (12%)
Query: 11 FKAPTFSSVSDIIRFKKPGGESFALLCEAQEN-----MWFKFIEGSSRKVAVPLNDRVKQ 65
++ TF V FK+ GE ++C + W + +V ++R
Sbjct: 94 YQKLTFREVVSPQEFKQ--GEDAEVVCRVSSSPAPAVSWLY----HNEEVTTISDNRFAM 147
Query: 66 V-SGTLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTVT 103
+ + L I D G Y C GE + V
Sbjct: 148 LANNNLQILNINKSDEGIYRCEGRVEARGEIDFRDIIVI 186
Score = 49.4 bits (118), Expect = 2e-07
Identities = 12/47 (25%), Positives = 22/47 (46%)
Query: 221 PPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNAER 267
+ S S L+ G + +F C A G P + G+K+++ +R
Sbjct: 2 LLQVTISLSKVELSVGESKFFTCTAIGEPESIDWYNPQGEKIISTQR 48
>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer,
immunoglobul domain, muscle protein, thick filament,
contractIle protein; 2.24A {Homo sapiens}
Length = 212
Score = 104 bits (261), Expect = 2e-27
Identities = 46/205 (22%), Positives = 68/205 (33%), Gaps = 34/205 (16%)
Query: 30 GESFALLCEAQENM------WFKFIEGSSRKVAVPLNDRVKQVS----GTLIIKEAKVED 79
E L + W G A+ +DRVK L I E D
Sbjct: 17 AEGIQLYSFVTYYVEDLKVNWSH--NG----SAIRYSDRVKTGVTGEQIWLQINEPTPND 70
Query: 80 SGKYLCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGV 139
GKY+ + + G L+ A A E R Q + + G+
Sbjct: 71 KGKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQ-------RLKQAAIAEKNRARVLGGL 123
Query: 140 EPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVP----------DHNEPVFRIDSVR 189
P V TI G+ TC G+P +SW+K+ K + F I+ V
Sbjct: 124 -PDVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKALAQTDHCNLKFEAGRTAYFTINGVS 182
Query: 190 KEDKGMYQCVIRNEQESAQASGELK 214
D G Y V++N+ S + +
Sbjct: 183 TADSGKYGLVVKNKYGSETSDFTVS 207
Score = 94.2 bits (234), Expect = 1e-23
Identities = 23/157 (14%), Positives = 44/157 (28%), Gaps = 37/157 (23%)
Query: 148 FGRPAQFTCKYEG----------NPVKTISWMKDGKPV---------PDHNEPVFRIDSV 188
+ EG ++W +G + + +I+
Sbjct: 7 SATDLKIQSTAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEP 66
Query: 189 RKEDKGMYQCVIRNEQESAQASGELK------------------LGGRFDPPVIKESFSD 230
DKG Y + + + Q + +L + + V+
Sbjct: 67 TPNDKGKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDV 126
Query: 231 ETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNAER 267
T+ G C G+P PE+SW + K L +
Sbjct: 127 VTIQEGKALNLTCNVWGDPPPEVSWLKNEKALAQTDH 163
Score = 52.9 bits (127), Expect = 1e-08
Identities = 22/106 (20%), Positives = 36/106 (33%), Gaps = 14/106 (13%)
Query: 8 PVGFKAPTFSSVSDIIRFKKPGGESFALLCEAQ-----ENMWFKF---IEGSSRKVAVPL 59
+A + D++ ++ G++ L C E W K + +
Sbjct: 112 AEKNRARVLGGLPDVVTIQE--GKALNLTCNVWGDPPPEVSWLKNEKALAQTDHCNLKFE 169
Query: 60 NDRVKQVSGTLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTVTAP 105
R I DSGKY VV N G E+ + ++V P
Sbjct: 170 AGRT----AYFTINGVSTADSGKYGLVVKNKYGSETSDFTVSVFIP 211
>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB:
2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A
Length = 212
Score = 104 bits (260), Expect = 2e-27
Identities = 40/139 (28%), Positives = 53/139 (38%), Gaps = 15/139 (10%)
Query: 139 VEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVP----------DHNEPVFRIDSV 188
P QT G A F C+ G+P I W K GK V D + V RI +
Sbjct: 11 RTPVDQTGVSGGVASFICQATGDPRPKIVWNKKGKKVSNQRFEVIEFDDGSGSVLRIQPL 70
Query: 189 R-KEDKGMYQCVIRNEQESAQASGELKLGGRFD----PPVIKESFSDETLNPGPNYYFKC 243
R D+ +Y+CV N S L + P I + + C
Sbjct: 71 RTPRDEAIYECVASNNVGEISVSTRLTVLREDQIPRGFPTIDMGPQLKVVERTRTATMLC 130
Query: 244 IASGNPTPEISWYLDGKKL 262
ASGNP PEI+W+ D +
Sbjct: 131 AASGNPDPEITWFKDFLPV 149
Score = 88.0 bits (218), Expect = 3e-21
Identities = 47/206 (22%), Positives = 73/206 (35%), Gaps = 52/206 (25%)
Query: 30 GESFALLCEAQEN-----MWFKFIEG----SSRKVAVPLNDRVKQVSGTLIIKEAKV-ED 79
G + +C+A + +W K +G + R + +D L I+ + D
Sbjct: 21 GGVASFICQATGDPRPKIVWNK--KGKKVSNQRFEVIEFDDGS---GSVLRIQPLRTPRD 75
Query: 80 SGKYLCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGV 139
Y CV +N+VG SV T LTV +
Sbjct: 76 EAIYECVASNNVGEISVSTRLTVLREDQIPRGFPT----------ID------------M 113
Query: 140 EPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNEPVF------------RIDS 187
P ++ ++ R A C GNP I+W KD PV N +I+
Sbjct: 114 GPQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDTSNNNGRIKQLRSESIGALQIEQ 173
Query: 188 VRKEDKGMYQCVIRN---EQESAQAS 210
+ D+G Y+CV N + SA A+
Sbjct: 174 SEESDQGKYECVATNSAGTRYSAPAN 199
Score = 51.7 bits (124), Expect = 3e-08
Identities = 17/47 (36%), Positives = 23/47 (48%)
Query: 221 PPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNAER 267
PP + D+T G F C A+G+P P+I W GKK+ N
Sbjct: 6 PPRFTRTPVDQTGVSGGVASFICQATGDPRPKIVWNKKGKKVSNQRF 52
>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein
complex, growth factor-receptor complex, TRA hormone
complex; HET: NDG NAG; 2.30A {Homo sapiens}
Length = 289
Score = 105 bits (263), Expect = 3e-27
Identities = 32/233 (13%), Positives = 59/233 (25%), Gaps = 27/233 (11%)
Query: 30 GESFALLCEAQENM-WFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYLCVVN 88
+F L C + W + + +++A + S L + D+G+Y C N
Sbjct: 15 SSTFVLTCSGSAPVVWERMSQEPPQEMAKAQDG---TFSSVLTLTNLTGLDTGEYFCTHN 71
Query: 89 NSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDF 148
+S G E+ E I P L E +
Sbjct: 72 DSRGLETDERKRL--------------YIFVPDPTV--------GFLPNDAEELFIFLTE 109
Query: 149 GRPAQFTCKYEGNPVKTISWMKDGKPVPDHNEPVFRIDSVRKEDKGMYQCVIRNEQESAQ 208
C+ + ++ + V + + Y C
Sbjct: 110 ITEITIPCRVTDPQL-VVTLHEKKGDVALPVPYDHQRGFSGIFEDRSYICKTTIGDREVD 168
Query: 209 ASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKK 261
+ + + + + G N CI GN W K+
Sbjct: 169 SDAYYVYRLQVSSINVSVNAVQTVVRQGENITLMCIVIGNEVVNFEWTYPRKE 221
Score = 66.6 bits (162), Expect = 5e-13
Identities = 21/155 (13%), Positives = 31/155 (20%), Gaps = 40/155 (25%)
Query: 75 AKVEDSGKYLCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPP 134
+ + + Y+C +
Sbjct: 148 SGIFEDRSYICKTTIGDREVDSDAYYVYRLQ--------------------------VSS 181
Query: 135 LAAGVEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNEPVFR---------- 184
+ V + G C GN V W K EPV
Sbjct: 182 INVSVNAVQTVVRQGENITLMCIVIGNEVVNFEWTYPRKESGRLVEPVTDFLLDMPYHIR 241
Query: 185 ----IDSVRKEDKGMYQCVIRNEQESAQASGELKL 215
I S ED G Y C + Q + +
Sbjct: 242 SILHIPSAELEDSGTYTCNVTESVNDHQDEKAINI 276
Score = 59.3 bits (143), Expect = 2e-10
Identities = 25/82 (30%), Positives = 33/82 (40%), Gaps = 8/82 (9%)
Query: 30 GESFALLCEAQEN-----MWFKFIEGSSRKVAV---PLNDRVKQVSGTLIIKEAKVEDSG 81
GE+ L+C N W + S R V L D + L I A++EDSG
Sbjct: 196 GENITLMCIVIGNEVVNFEWTYPRKESGRLVEPVTDFLLDMPYHIRSILHIPSAELEDSG 255
Query: 82 KYLCVVNNSVGGESVETVLTVT 103
Y C V SV E + +T
Sbjct: 256 TYTCNVTESVNDHQDEKAINIT 277
Score = 28.5 bits (63), Expect = 2.2
Identities = 6/40 (15%), Positives = 12/40 (30%), Gaps = 4/40 (10%)
Query: 223 VIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKL 262
V+ + LN + C S + W ++
Sbjct: 2 VVTPPGPELVLNVSSTFVLTCSGSA----PVVWERMSQEP 37
>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold,
glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4
b.1.1.4 PDB: 2ncm_A 3ncm_A
Length = 191
Score = 102 bits (255), Expect = 7e-27
Identities = 46/205 (22%), Positives = 72/205 (35%), Gaps = 51/205 (24%)
Query: 30 GESFALLCEAQEN------MWFKF----IEGSSRKVAVPLNDRVKQVSGTLIIKEAKVED 79
GES LC+ + WF + + ++++V ND S TL I A ++D
Sbjct: 17 GESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWND---DDSSTLTIYNANIDD 73
Query: 80 SGKYLCVVNNSVGGESVETV-LTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAG 138
+G Y CVV G +S TV + + L F
Sbjct: 74 AGIYKCVVTAEDGTQSEATVNVKIFQKL-----------------MFK------------ 104
Query: 139 VEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNEPVF--------RIDSVRK 190
PT Q G A C + TI W G+ V + F +I ++K
Sbjct: 105 NAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQIRGIKK 164
Query: 191 EDKGMYQCVIRNEQESAQASGELKL 215
D+G Y+C R ++++
Sbjct: 165 TDEGTYRCEGRILARGEINFKDIQV 189
Score = 97.6 bits (243), Expect = 4e-25
Identities = 28/143 (19%), Positives = 58/143 (40%), Gaps = 17/143 (11%)
Query: 139 VEPTVQTIDFGRPAQFTCKYEGNP-VKTISWMK-DGKPVPDHNEPV-----------FRI 185
+ P+ I G F C+ G+ K ISW +G+ + + + + I
Sbjct: 7 IVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTI 66
Query: 186 DSVRKEDKGMYQCVIRNEQ-ESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCI 244
+ +D G+Y+CV+ E ++A+ +K+ F + K + + + G + C
Sbjct: 67 YNANIDDAGIYKCVVTAEDGTQSEATVNVKI---FQKLMFKNAPTPQEFKEGEDAVIVCD 123
Query: 245 ASGNPTPEISWYLDGKKLVNAER 267
+ P I W G+ ++ +
Sbjct: 124 VVSSLPPTIIWKHKGRDVILKKD 146
Score = 56.0 bits (135), Expect = 8e-10
Identities = 21/97 (21%), Positives = 33/97 (34%), Gaps = 12/97 (12%)
Query: 13 APTFSSVSDIIRFKKPGGESFALLCEAQEN-----MWFKFIEGSSRKVAVPLNDRVKQVS 67
F + FK+ GE ++C+ + +W R V + + R +S
Sbjct: 100 KLMFKNAPTPQEFKE--GEDAVIVCDVVSSLPPTIIWKH----KGRDVILKKDVRFIVLS 153
Query: 68 -GTLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTVT 103
L I+ K D G Y C GE + V
Sbjct: 154 NNYLQIRGIKKTDEGTYRCEGRILARGEINFKDIQVI 190
Score = 40.2 bits (94), Expect = 2e-04
Identities = 8/48 (16%), Positives = 21/48 (43%), Gaps = 1/48 (2%)
Query: 221 PPVIKESFSDETLNPGPNYYFKCIASGNP-TPEISWYLDGKKLVNAER 267
+ S ++ G + +F C +G+ +ISW+ + ++ +
Sbjct: 2 VLQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQ 49
>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular
adhesion, ligand-independent DIME mutational analysis,
transferase; HET: EPE; 1.96A {Homo sapiens} SCOP:
b.1.1.1 b.1.1.4
Length = 182
Score = 100 bits (250), Expect = 3e-26
Identities = 33/137 (24%), Positives = 50/137 (36%), Gaps = 16/137 (11%)
Query: 139 VEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNEP-----------VFRIDS 187
P T+ G+P + C EG I W+KDG V + ++ + S
Sbjct: 7 GAPVKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKS 66
Query: 188 VRKEDKGMYQCVIRNEQESAQ-ASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIAS 246
V + D G Y C + + E+ L + G P D + P + C A
Sbjct: 67 VERSDAGRYWCQVEDGGETEISQPVWLTVEG---VPFFTVEPKDLAVPPNAPFQLSCEAV 123
Query: 247 GNPTP-EISWYLDGKKL 262
G P P I W+ K+
Sbjct: 124 GPPEPVTIVWWRGTTKI 140
Score = 91.0 bits (226), Expect = 9e-23
Identities = 37/192 (19%), Positives = 63/192 (32%), Gaps = 44/192 (22%)
Query: 30 GESFALLCEAQEN-----MWFKFIEG----SSRKVAVPLNDRVKQVSGTLIIKEAKVEDS 80
G+ L C + W K +G + ++ +P+++ + G L +K + D+
Sbjct: 17 GQPVKLNCSVEGMEEPDIQWVK--DGAVVQNLDQLYIPVSE--QHWIGFLSLKSVERSDA 72
Query: 81 GKYLCVVNNSVGGE-SVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGV 139
G+Y C V + E S LTV FT V
Sbjct: 73 GRYWCQVEDGGETEISQPVWLTVEGV-----------------PFFT------------V 103
Query: 140 EPTVQTIDFGRPAQFTCKYEGNPV-KTISWMKDGKPVPDHNEPVFRIDSVRKEDKGMYQC 198
EP + P Q +C+ G P TI W + + ++ M+ C
Sbjct: 104 EPKDLAVPPNAPFQLSCEAVGPPEPVTIVWWRGTTKIGGPAPSPSVLNVTGVTQSTMFSC 163
Query: 199 VIRNEQESAQAS 210
N + A +
Sbjct: 164 EAHNLKGLASSR 175
Score = 49.0 bits (117), Expect = 2e-07
Identities = 10/47 (21%), Positives = 18/47 (38%)
Query: 221 PPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNAER 267
+ + T++ G C G P+I W DG + N ++
Sbjct: 2 GLKLMGAPVKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQ 48
>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain,
immunoglobulin superfamily, transmembrane,
phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A
{Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A
Length = 389
Score = 103 bits (259), Expect = 7e-26
Identities = 41/214 (19%), Positives = 68/214 (31%), Gaps = 50/214 (23%)
Query: 30 GESFALLCEAQEN-----MWFKFIEGSS-RKVAVPLNDRVK----QVSGTLIIKEAKVED 79
L+C+A+ W + ++G + + L+ R++ S +L IK+ K+ D
Sbjct: 15 NGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLSD 74
Query: 80 SGKYLCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGV 139
SG+Y C + +GG L + +F
Sbjct: 75 SGRYDCEAASRIGGHQKSMYLDIEY-----------------APKFI------------S 105
Query: 140 EPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNEPVFR-----------IDSV 188
T+ G P +C + NP +I W +D +P N + I
Sbjct: 106 NQTIYYSWEGNPINISCDVKSNPPASIHWRRDKLVLPAKNTTNLKTYSTGRKMILEIAPT 165
Query: 189 RKEDKGMYQCVIRNEQESAQASGELKLGGRFDPP 222
D G Y C N + L L P
Sbjct: 166 SDNDFGRYNCTATNHIGTRFQEYILALADVPSSP 199
Score = 96.0 bits (239), Expect = 5e-23
Identities = 25/140 (17%), Positives = 36/140 (25%), Gaps = 19/140 (13%)
Query: 139 VEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNEPVF--------------- 183
++ +T C EG P+ I+W +
Sbjct: 5 IQLKNETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSS 64
Query: 184 -RIDSVRKEDKGMYQCVIRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFK 242
I V+ D G Y C + Q S L + P + + G
Sbjct: 65 LHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDIE---YAPKFISNQTIYYSWEGNPINIS 121
Query: 243 CIASGNPTPEISWYLDGKKL 262
C NP I W D L
Sbjct: 122 CDVKSNPPASIHWRRDKLVL 141
Score = 37.5 bits (87), Expect = 0.003
Identities = 13/45 (28%), Positives = 16/45 (35%), Gaps = 1/45 (2%)
Query: 222 PVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNAE 266
P I + +ET C A G P PEI+W E
Sbjct: 2 PHIIQ-LKNETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTE 45
>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-
like; 2.50A {Homo sapiens}
Length = 312
Score = 102 bits (255), Expect = 8e-26
Identities = 41/274 (14%), Positives = 86/274 (31%), Gaps = 57/274 (20%)
Query: 29 GGESFALLCEAQENM----WFK---FIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSG 81
G S C+ W K E S R ++ + K+ ++D G
Sbjct: 17 GVISLNFECDKMTPKSEFSWSKDYVSTEDSPRLEVESKGNKT-----KMTFKDLGMDDLG 71
Query: 82 KYLCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEP 141
Y C V ++ G S + + + P + E
Sbjct: 72 IYSCDVTDTDGIASSYLIDEEELKRLLALSHEHK----------------FPTVPVKSEL 115
Query: 142 TVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVP---------DHNEPVFR--IDSVRK 190
V+ ++ G+ + + + ++++ + K + D N + ++ ++
Sbjct: 116 AVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQD 175
Query: 191 EDKGMYQCVIRNEQESAQASGEL----------------KLGGRFDPPVIKESFSDETLN 234
ED+G Y +++ + + ++ L + R P E S E
Sbjct: 176 EDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYLSWEV-T 234
Query: 235 PGPNYYFKCIASGNPTP-EISWYLDGKKLVNAER 267
N KC + I WY D +++ E+
Sbjct: 235 GECNVLLKCKVANIKKETHIVWYKDEREISVDEK 268
Score = 92.7 bits (230), Expect = 3e-22
Identities = 31/202 (15%), Positives = 64/202 (31%), Gaps = 33/202 (16%)
Query: 30 GESFALLCEAQEN------MWFK----FIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVED 79
+A++ + EG K+ + N + + +++ + ED
Sbjct: 122 KGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGI----IEMFMEKLQDED 177
Query: 80 SGKYLCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGV 139
G Y + + VL E Q ++ R P V
Sbjct: 178 EGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRK---------QGP--HFV 226
Query: 140 EPTVQTIDFGRPAQFTCKYEGNPVKT-ISWMKDGKPVPDHNEPVF-------RIDSVRKE 191
E + CK +T I W KD + + + F I K+
Sbjct: 227 EYLSWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFKDGICTLLITEFSKK 286
Query: 192 DKGMYQCVIRNEQESAQASGEL 213
D G+Y+ ++++++ ++ +L
Sbjct: 287 DAGIYEVILKDDRGKDKSRLKL 308
Score = 82.3 bits (203), Expect = 2e-18
Identities = 21/143 (14%), Positives = 44/143 (30%), Gaps = 20/143 (13%)
Query: 144 QTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVP---------DHNEPVFRIDSVRKEDKG 194
D F C + P SW KD N+ + +D G
Sbjct: 13 VDDDGVISLNFECD-KMTPKSEFSWSKDYVSTEDSPRLEVESKGNKTKMTFKDLGMDDLG 71
Query: 195 MYQCVIRNE----------QESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCI 244
+Y C + + +E + L +F +K + E L G ++
Sbjct: 72 IYSCDVTDTDGIASSYLIDEEELKRLLALSHEHKFPTVPVKSELAVEILEKGQVRFWMQA 131
Query: 245 ASGNPTPEISWYLDGKKLVNAER 267
+ ++++ + K++ +
Sbjct: 132 EKLSGNAKVNYIFNEKEIFEGPK 154
Score = 46.9 bits (111), Expect = 2e-06
Identities = 15/83 (18%), Positives = 32/83 (38%), Gaps = 14/83 (16%)
Query: 30 GESFALLCEAQEN------MWFKFIEGSSRKVAVPLNDRVKQVSG--TLIIKEAKVEDSG 81
+ L C+ +W+K + + ++++ G TL+I E +D+G
Sbjct: 236 ECNVLLKCKVANIKKETHIVWYK------DEREISVDEKHDFKDGICTLLITEFSKKDAG 289
Query: 82 KYLCVVNNSVGGESVETVLTVTA 104
Y ++ + G + L A
Sbjct: 290 IYEVILKDDRGKDKSRLKLVDEA 312
>1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus,
picornavirus, virus/receptor complex; 15.00A {Homo
sapiens} SCOP: i.6.1.1 PDB: 1dgi_R
Length = 302
Score = 101 bits (253), Expect = 1e-25
Identities = 38/231 (16%), Positives = 63/231 (27%), Gaps = 42/231 (18%)
Query: 48 IEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYLCVVNNSVGG-ESVETVLTVTAPL 106
S R V + + +L + +VED G Y C+ G SV+ L V A
Sbjct: 59 YSESKRLEFVAARLGAELRNASLRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRVLAKP 118
Query: 107 AAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEGNPVKTI 166
E + C + G G P I
Sbjct: 119 QNTAEVQKVQLTGEPVPMARCV-------STG---------------------GRPPAQI 150
Query: 167 SWMKDGKPVPDHNEP------------VFRIDSVRKEDKGMYQCVIRNEQESAQASGELK 214
+W D +P+ ++ ++ + + D C + +E +
Sbjct: 151 TWHSDLGGMPNTSQVPGFLSGTVTVTSLWILVPSSQVDGKNVTCKVEHESFEKPQLLTVN 210
Query: 215 LGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTP-EISWYLDGKKLVN 264
L + P V + + C A NP P +W L
Sbjct: 211 LTVYYPPEVSISGYDNNWYLGQNEATLTCDARSNPEPTGYNWSTTMGPLPP 261
Score = 76.7 bits (188), Expect = 2e-16
Identities = 28/200 (14%), Positives = 43/200 (21%), Gaps = 45/200 (22%)
Query: 29 GGESFALLCEAQEN------MWFK---FIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVED 79
G C + W + +S+ V+ I+ + D
Sbjct: 131 GEPVPMARCVSTGGRPPAQITWHSDLGGMPNTSQVPGFL--SGTVTVTSLWILVPSSQVD 188
Query: 80 SGKYLCVVNNSVGGESVET--VLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAA 137
C V + + LTV P +
Sbjct: 189 GKNVTCKVEHESFEKPQLLTVNLTVYYPPEVSISG------------------------- 223
Query: 138 GVEPTVQTIDFGRPAQFTCKYEGNP-VKTISWMKDGKPVPDH---NEPVFRIDSVRKEDK 193
A TC NP +W P+P I V K
Sbjct: 224 ---YDNNWYLGQNEATLTCDARSNPEPTGYNWSTTMGPLPPFAVAQGAQLLIRPVDKPIN 280
Query: 194 GMYQCVIRNEQESAQASGEL 213
C + N + QA +
Sbjct: 281 TTLICNVTNALGARQAELTV 300
Score = 72.8 bits (178), Expect = 4e-15
Identities = 27/163 (16%), Positives = 47/163 (28%), Gaps = 37/163 (22%)
Query: 139 VEPTVQTIDFGRPAQFTCKYEGNP-----VKTISWMKDGKPVP----------------- 176
PT G C + V ++W + G+
Sbjct: 5 QAPTQVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKR 64
Query: 177 ----------DHNEPVFRIDSVRKEDKGMYQC-VIRNEQESAQASGELKLGGRFDPPVIK 225
+ R+ +R ED+G Y C + Q S L++ P
Sbjct: 65 LEFVAARLGAELRNASLRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRV---LAKPQNT 121
Query: 226 ESFSDETLNPGPNYYFKCIA-SGNPTPEISWYLDGKKLVNAER 267
L P +C++ G P +I+W+ D + N +
Sbjct: 122 AEVQKVQLTGEPVPMARCVSTGGRPPAQITWHSDLGGMPNTSQ 164
Score = 50.9 bits (121), Expect = 1e-07
Identities = 16/81 (19%), Positives = 25/81 (30%), Gaps = 14/81 (17%)
Query: 28 PGGESFALLCEAQEN------MWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSG 81
G L C+A+ N W PL L+I+ +
Sbjct: 230 LGQNEATLTCDARSNPEPTGYNWST--TMG------PLPPFAVAQGAQLLIRPVDKPINT 281
Query: 82 KYLCVVNNSVGGESVETVLTV 102
+C V N++G E + V
Sbjct: 282 TLICNVTNALGARQAELTVQV 302
>1f97_A Junction adhesion molecule; immunoglobulin superfamily,
beta-sandwich fold, cell adhesion; 2.50A {Mus musculus}
SCOP: b.1.1.1 b.1.1.4
Length = 212
Score = 97.0 bits (241), Expect = 1e-24
Identities = 41/231 (17%), Positives = 68/231 (29%), Gaps = 58/231 (25%)
Query: 14 PTFSSVSDIIRFKKPGGESFALLCEAQEN-----MWFK------FIEGSSRKVAVPLNDR 62
+ + ++ + ES L C W + + ++ P DR
Sbjct: 2 GSVYTAQSDVQVPE--NESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADR 59
Query: 63 VKQVSGTLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRP 122
V S + +D+G+Y C+V+ G E + + TV P
Sbjct: 60 VTFSSSGITFSSVTRKDNGEYTCMVSEEGGQNYGEVSIHL----------TVLV-----P 104
Query: 123 AQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCK-YEGNPVKTISWMKDGKPVPDHNEP 181
++ G A TC ++G+P SW KDG + +
Sbjct: 105 PSKP------------TISVPSSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAK 152
Query: 182 VFR-----------------IDSVRKEDKGMYQCVIRNEQESAQASGELKL 215
R D V D G Y C +N +A S +
Sbjct: 153 KTRAFMNSSFTIDPKSGDLIFDPVTAFDSGEYYCQAQNGYGTAMRSEAAHM 203
Score = 89.3 bits (221), Expect = 1e-21
Identities = 26/147 (17%), Positives = 42/147 (28%), Gaps = 19/147 (12%)
Query: 139 VEPTVQTIDFGRPAQFTCKYEGNPVKTISWMK-DGKPVPDHNE----------------P 181
+ + + TC Y G + W G
Sbjct: 6 TAQSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVTFSSS 65
Query: 182 VFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYF 241
SV ++D G Y C++ E + L PP ++ G
Sbjct: 66 GITFSSVTRKDNGEYTCMVSEEGGQNYGEVSIHLTVLV-PPSKPTISVPSSVTIGNRAVL 124
Query: 242 KCIA-SGNPTPEISWYLDGKKLVNAER 267
C G+P E SW+ DG ++ A+
Sbjct: 125 TCSEHDGSPPSEYSWFKDGISMLTADA 151
Score = 52.7 bits (126), Expect = 2e-08
Identities = 20/88 (22%), Positives = 28/88 (31%), Gaps = 12/88 (13%)
Query: 30 GESFALLCEAQE------NMWFK----FIEGSSRKVAVPLNDR--VKQVSGTLIIKEAKV 77
G L C + WFK + ++K +N + SG LI
Sbjct: 119 GNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTA 178
Query: 78 EDSGKYLCVVNNSVGGESVETVLTVTAP 105
DSG+Y C N G + A
Sbjct: 179 FDSGEYYCQAQNGYGTAMRSEAAHMDAV 206
Score = 40.3 bits (94), Expect = 2e-04
Identities = 7/46 (15%), Positives = 13/46 (28%)
Query: 222 PVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNAER 267
+ + SD + + C SG +P + W
Sbjct: 2 GSVYTAQSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVC 47
>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor,
tight junction formation, immunoglobulin superfamily,
immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1
b.1.1.4 PDB: 3eoy_G
Length = 209
Score = 96.2 bits (239), Expect = 2e-24
Identities = 40/230 (17%), Positives = 64/230 (27%), Gaps = 57/230 (24%)
Query: 13 APTFSSVSDIIRFKKPGGESFALLCEAQEN-----MWFK------FIEGSSRKVAVPLND 61
+ T S +R + L C W + + K+ D
Sbjct: 4 SVTVHSSEPEVRIPE--NNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYED 61
Query: 62 RVKQVSGTLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGR 121
RV + + K ED+G Y C+V+ G E + + V
Sbjct: 62 RVTFLPTGITFKSVTREDTGTYTCMVSEEGGNSYGEVKVKL----------IVLV----- 106
Query: 122 PAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCK-YEGNPVKTISWMKDGKPVPDHNE 180
P + G A TC +G+P +W KDG +P + +
Sbjct: 107 PPSKP------------TVNIPSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPK 154
Query: 181 PVF----------------RIDSVRKEDKGMYQCVIRNEQESAQASGELK 214
D + D G Y C RN + S ++
Sbjct: 155 STRAFSNSSYVLNPTTGELVFDPLSASDTGEYSCEARNGYGTPMTSNAVR 204
Score = 93.5 bits (232), Expect = 3e-23
Identities = 27/147 (18%), Positives = 43/147 (29%), Gaps = 19/147 (12%)
Query: 139 VEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNEP----------------- 181
I P + +C Y G + W D
Sbjct: 9 SSEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFLPT 68
Query: 182 VFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYF 241
SV +ED G Y C++ E ++ ++KL PP + G
Sbjct: 69 GITFKSVTREDTGTYTCMVSEEGGNSYGEVKVKLIVLV-PPSKPTVNIPSSATIGNRAVL 127
Query: 242 KCIAS-GNPTPEISWYLDGKKLVNAER 267
C G+P E +W+ DG + +
Sbjct: 128 TCSEQDGSPPSEYTWFKDGIVMPTNPK 154
Score = 53.4 bits (128), Expect = 9e-09
Identities = 17/86 (19%), Positives = 28/86 (32%), Gaps = 11/86 (12%)
Query: 30 GESFALLCEAQE------NMWFK---FIEGSSRKVAVPLNDR--VKQVSGTLIIKEAKVE 78
G L C Q+ WFK + + + N + +G L+
Sbjct: 122 GNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSAS 181
Query: 79 DSGKYLCVVNNSVGGESVETVLTVTA 104
D+G+Y C N G + + A
Sbjct: 182 DTGEYSCEARNGYGTPMTSNAVRMEA 207
Score = 43.8 bits (103), Expect = 2e-05
Identities = 7/47 (14%), Positives = 12/47 (25%)
Query: 221 PPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNAER 267
+ S + + C SG +P + W D
Sbjct: 4 SVTVHSSEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVC 50
>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila
melanogaster} PDB: 3pxj_A
Length = 212
Score = 96.0 bits (239), Expect = 3e-24
Identities = 39/146 (26%), Positives = 55/146 (37%), Gaps = 17/146 (11%)
Query: 139 VEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNEP-----------VFRIDS 187
+P Q + G A F C G+P +I W K+GK V + RI+
Sbjct: 11 RKPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQPGGISILRIEP 70
Query: 188 VRK-EDKGMYQCVIRNEQ-ESAQASGELKLGGRFD----PPVIKESFSDETLNPGPNYYF 241
VR D Y+CV N ++ A L + PVI + + G
Sbjct: 71 VRAGRDDAPYECVAENGVGDAVSADATLTIYEGDKTPAGFPVITQGPGTRVIEVGHTVLM 130
Query: 242 KCIASGNPTPEISWYLDGKKLVNAER 267
C A GNPTP I W + K+ +
Sbjct: 131 TCKAIGNPTPNIYWIKNQTKVDMSNP 156
Score = 83.7 bits (207), Expect = 1e-19
Identities = 43/199 (21%), Positives = 69/199 (34%), Gaps = 43/199 (21%)
Query: 30 GESFALLCEAQEN-----MWFK---FIEGSSRKVAVPLNDRVKQVSGTLIIKEAKV-EDS 80
G + C A+ + +W K + G+ + V + L I+ + D
Sbjct: 21 GGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQPGGISI---LRIEPVRAGRDD 77
Query: 81 GKYLCVVNNSVGG-ESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGV 139
Y CV N VG S + LT+ T
Sbjct: 78 APYECVAENGVGDAVSADATLTIY----------EGDKTPAGFPVIT------------Q 115
Query: 140 EPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNEPVF-------RIDSVRKED 192
P + I+ G TCK GNP I W+K+ V + P + +I++ R+ED
Sbjct: 116 GPGTRVIEVGHTVLMTCKAIGNPTPNIYWIKNQTKVD-MSNPRYSLKDGFLQIENSREED 174
Query: 193 KGMYQCVIRNEQESAQASG 211
+G Y+CV N + +
Sbjct: 175 QGKYECVAENSMGTEHSKA 193
Score = 52.9 bits (127), Expect = 1e-08
Identities = 15/47 (31%), Positives = 22/47 (46%)
Query: 221 PPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNAER 267
PP I ++ + G F C A G+P P I W +GKK+ +
Sbjct: 6 PPEIIRKPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQS 52
Score = 52.5 bits (126), Expect = 2e-08
Identities = 24/83 (28%), Positives = 35/83 (42%), Gaps = 13/83 (15%)
Query: 30 GESFALLCEAQEN-----MWFKFIEGSSRKVAVPLNDRVKQV-SGTLIIKEAKVEDSGKY 83
G + + C+A N W K V +++ + G L I+ ++ ED GKY
Sbjct: 125 GHTVLMTCKAIGNPTPNIYWIK--NQ----TKVDMSNPRYSLKDGFLQIENSREEDQGKY 178
Query: 84 LCVVNNSVG-GESVETVLTVTAP 105
CV NS+G S T L V
Sbjct: 179 ECVAENSMGTEHSKATNLYVKVR 201
>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}
Length = 305
Score = 97.9 bits (244), Expect = 3e-24
Identities = 34/211 (16%), Positives = 58/211 (27%), Gaps = 45/211 (21%)
Query: 30 GESFALLCEAQEN-----MWFKF---IEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSG 81
+ L+C+ + W++ I K + LII +D+
Sbjct: 19 QSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFK---GGYHQLIIASVTDDDAT 75
Query: 82 KYLCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEP 141
Y N G S L V P + T++
Sbjct: 76 VYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEG------------------------M 111
Query: 142 TVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNEP----------VFRIDSVRKE 191
G + G P I+W K + ++ + + V ++
Sbjct: 112 GAVHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERK 171
Query: 192 DKGMYQCVIRNEQESAQASGELKLGGRFDPP 222
D G Y +N Q + EL + DPP
Sbjct: 172 DAGFYVVCAKNRFGIDQKTVELDVADVPDPP 202
Score = 97.5 bits (243), Expect = 5e-24
Identities = 29/142 (20%), Positives = 44/142 (30%), Gaps = 13/142 (9%)
Query: 139 VEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNEPV-----------FRIDS 187
E + + A CK G+P + W + GK + I S
Sbjct: 9 EELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIAS 68
Query: 188 VRKEDKGMYQCVIRNEQESAQASGELKLGG--RFDPPVIKESFSDETLNPGPNYYFKCIA 245
V +D +YQ N+ S + L++ + P E G K
Sbjct: 69 VTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVSIKIPF 128
Query: 246 SGNPTPEISWYLDGKKLVNAER 267
SG P P I+W + N
Sbjct: 129 SGKPDPVITWQKGQDLIDNNGH 150
Score = 46.7 bits (111), Expect = 3e-06
Identities = 12/43 (27%), Positives = 20/43 (46%)
Query: 221 PPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLV 263
P KE + + N C +G+P P + WY GK+++
Sbjct: 4 APHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEII 46
>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain,
cytokine decoy RE virus/viral protein, type-1
interferon, soluble A/B-IFNR; HET: EPE; 2.10A
{Ectromelia virus}
Length = 329
Score = 98.0 bits (243), Expect = 4e-24
Identities = 35/263 (13%), Positives = 55/263 (20%), Gaps = 53/263 (20%)
Query: 30 GESFALLCEAQENMWFKFIEGSSRKV-------AVPLNDRVKQVSGTLIIKEAKVEDSG- 81
GE F+ C E+ V + +G L I DS
Sbjct: 44 GEPFSAKCPPIEDSLLSHRYNDKDNVVNWEKIGKTRRPLNRRVKNGDLWIANYTSNDSHR 103
Query: 82 KYLCVVNNSVGG-ESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVE 140
+YLC V G + P + E C
Sbjct: 104 RYLCTVTTKNGDCVQGIVRSHIRKPPSCIPETYELGTHDKYGIDLYCGI----------- 152
Query: 141 PTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNEPV------FRIDSVRKEDKG 194
I+W K+ + + I + ED G
Sbjct: 153 -----------------LYAKHYNNITWYKNNQELIIDGTKYSQSGQNLIIHNPELEDSG 195
Query: 195 MYQCVIRNEQESAQASG------ELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGN 248
Y C + + + L + D + G C A
Sbjct: 196 RYDCYVHYDDVRIKNDIVVSRCKILTVIPSQDHRFKLILDPKINVTIGEPANITCTAVST 255
Query: 249 PTPE----ISWYLDGKKLVNAER 267
I W ++ +
Sbjct: 256 SLLVDDVLIDWENPSGWIIGLDF 278
Score = 83.7 bits (206), Expect = 6e-19
Identities = 32/213 (15%), Positives = 55/213 (25%), Gaps = 50/213 (23%)
Query: 28 PGGESFALLCEAQEN------MWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSG 81
L C W+K + + + Q LII ++EDSG
Sbjct: 141 HDKYGIDLYCGILYAKHYNNITWYK--NN---QELIIDGTKYSQSGQNLIIHNPELEDSG 195
Query: 82 KYLCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEP 141
+Y C V+ + V++ L + +
Sbjct: 196 RYDCYVHYDDVRIKNDIVVSRCKILTVIPSQDHRFKL--------------------ILD 235
Query: 142 TVQTIDFGRPAQFTCKYEGNPVK----TISWMKDGKPVPDHNEPVF-------------- 183
+ G PA TC + I W + + V+
Sbjct: 236 PKINVTIGEPANITCTAVSTSLLVDDVLIDWENPSGWIIGLDFGVYSILTSSGGITEATL 295
Query: 184 RIDSVRKEDKGM-YQCVIRNEQESAQASGELKL 215
++V +E G Y C N + + L
Sbjct: 296 YFENVTEEYIGNTYTCRGHNYYFDKTLTTTVVL 328
Score = 69.5 bits (169), Expect = 7e-14
Identities = 23/157 (14%), Positives = 39/157 (24%), Gaps = 19/157 (12%)
Query: 127 CKYEISPPLAAGVEPTVQTIDFGRPAQFTCK---------YEGNPVKTISWMKDGKPVPD 177
+ P G P C + ++W K GK
Sbjct: 22 KDSKWLNPSCMFGGTMNDMAALGEPFSAKCPPIEDSLLSHRYNDKDNVVNWEKIGKTRRP 81
Query: 178 HNEPVF----RIDSVRKEDKG-MYQCVIRNEQ-ESAQASGELKLGGRFDPPVIKESFSDE 231
N V I + D Y C + + + Q + PP +
Sbjct: 82 LNRRVKNGDLWIANYTSNDSHRRYLCTVTTKNGDCVQGIVRSHI---RKPPSCIPETYEL 138
Query: 232 TLNPGPNYYFKC-IASGNPTPEISWYLDGKKLVNAER 267
+ C I I+WY + ++L+
Sbjct: 139 GTHDKYGIDLYCGILYAKHYNNITWYKNNQELIIDGT 175
>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system;
HET: NAG MAN FUC P33; 2.65A {Homo sapiens}
Length = 262
Score = 96.1 bits (239), Expect = 6e-24
Identities = 39/246 (15%), Positives = 64/246 (26%), Gaps = 58/246 (23%)
Query: 30 GESFALLCEAQEN------MWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKY 83
E+ L CE WF + + + I A V DSG+Y
Sbjct: 16 EETVTLHCEVLHLPGSSSTQWFL------------NGTATQTSTPSYRITSASVNDSGEY 63
Query: 84 LCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTV 143
C S + ++ + L ++ +
Sbjct: 64 RCQRGLSGRSDPIQLEIH------------------------------RGWLL--LQVSS 91
Query: 144 QTIDFGRPAQFTCKYEGN-PVKTISWMKDGKPV-PDHNEPVFRIDSVRKEDKGMYQCVIR 201
+ G P C + V + + ++GK H I G Y C
Sbjct: 92 RVFTEGEPLALRCHAWKDKLVYNVLYYRNGKAFKFFHWNSNLTILKTNISHNGTYHCSGM 151
Query: 202 NEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEI-----SWY 256
+ A + + F PV+ S + L G C S+Y
Sbjct: 152 GKHRYTSAGISVTVKELFPAPVLNASVTSPLL-EGNLVTLSCETKLLLQRPGLQLYFSFY 210
Query: 257 LDGKKL 262
+ K L
Sbjct: 211 MGSKTL 216
Score = 84.2 bits (208), Expect = 2e-19
Identities = 22/126 (17%), Positives = 38/126 (30%), Gaps = 9/126 (7%)
Query: 139 VEPTVQTIDFGRPAQFTCKYEGNP-VKTISWMKDGKPVPDHNEPVFRIDSVRKEDKGMYQ 197
++P ++ C+ P + W +G P +RI S D G Y+
Sbjct: 6 LQPPWVSVFQEETVTLHCEVLHLPGSSSTQWFLNGTATQTST-PSYRITSASVNDSGEYR 64
Query: 198 CVIRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGN-PTPEISWY 256
C S E+ + S G +C A + + +Y
Sbjct: 65 CQRGLSGRSDPIQLEIH------RGWLLLQVSSRVFTEGEPLALRCHAWKDKLVYNVLYY 118
Query: 257 LDGKKL 262
+GK
Sbjct: 119 RNGKAF 124
Score = 78.8 bits (194), Expect = 1e-17
Identities = 37/199 (18%), Positives = 64/199 (32%), Gaps = 50/199 (25%)
Query: 30 GESFALLCEAQEN------MWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKY 83
GE AL C A ++ ++++ G + K + L I + + +G Y
Sbjct: 97 GEPLALRCHAWKDKLVYNVLYYR--NGKAFKFFHW--------NSNLTILKTNISHNGTY 146
Query: 84 LCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTV 143
C S +TV A P L A V +
Sbjct: 147 HCSGMGKHRYTSAGISVTVKELFPA------------------------PVLNASVTSPL 182
Query: 144 QTIDFGRPAQFTCKYEGNPVK-----TISWMKDGKPVPD-HNEPVFRIDSVRKEDKGMYQ 197
G +C+ + + S+ K + + ++I + R+ED G+Y
Sbjct: 183 LE---GNLVTLSCETKLLLQRPGLQLYFSFYMGSKTLRGRNTSSEYQILTARREDSGLYW 239
Query: 198 CVIRNEQ-ESAQASGELKL 215
C E + S EL+L
Sbjct: 240 CEAATEDGNVLKRSPELEL 258
Score = 31.8 bits (72), Expect = 0.17
Identities = 7/42 (16%), Positives = 11/42 (26%), Gaps = 1/42 (2%)
Query: 222 PVIKESFSDETLNPGPNYYFKCIASGNPTPE-ISWYLDGKKL 262
VI ++ C P W+L+G
Sbjct: 2 AVITLQPPWVSVFQEETVTLHCEVLHLPGSSSTQWFLNGTAT 43
>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region
plasiticity, cell adhesion; HET: PG6; 2.50A {Homo
sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A
Length = 331
Score = 97.5 bits (242), Expect = 7e-24
Identities = 47/251 (18%), Positives = 74/251 (29%), Gaps = 56/251 (22%)
Query: 44 WFKFIEGSSRKVAV-----------PLNDRV-----KQVSGTLIIKEAKVEDSGKYLCVV 87
W K GS + VA+ P +RV GT+ + ++ED G Y+C
Sbjct: 52 WQKSTNGSKQNVAIYNPSMGVSVLAPYRERVEFLRPSFTDGTIRLSRLELEDEGVYICEF 111
Query: 88 NNSVGGESVETV-LTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTI 146
G + LTV A PT +
Sbjct: 112 ATFPTGNRESQLNLTVMAK------PTNWIEGTQAV------------------LRAKKG 147
Query: 147 DFGRPAQFTCK-YEGNPVKTISWMKDGKPVPDHNEP-----------VFRIDSVRKEDKG 194
+ TC G P +SW K ++ E +R+ R+ +
Sbjct: 148 QDDKVLVATCTSANGKPPSVVSWETRLKGEAEYQEIRNPNGTVTVISRYRLVPSREAHQQ 207
Query: 195 MYQCVIRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTP-EI 253
C++ + + S L + +++P V E F + C A NP E
Sbjct: 208 SLACIVNYHMDRFKESLTLNV--QYEPEVTIEGFDGNWYLQRMDVKLTCKADANPPATEY 265
Query: 254 SWYLDGKKLVN 264
W L
Sbjct: 266 HWTTLNGSLPK 276
Score = 87.5 bits (216), Expect = 3e-20
Identities = 26/212 (12%), Positives = 49/212 (23%), Gaps = 42/212 (19%)
Query: 30 GESFALLCEAQEN------MWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKY 83
+ C + W ++G + + + V + ++
Sbjct: 150 DKVLVATCTSANGKPPSVVSWETRLKGEAEYQEIRNPNGTVTVISRYRLVPSREAHQQSL 209
Query: 84 LCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTV 143
C+VN + L V P V I
Sbjct: 210 ACIVNYHMDRFKESLTLNVQYE------PEV---------------TIEGFDGNWYLQ-- 246
Query: 144 QTIDFGRPAQFTCKYEGNP-VKTISWMKDGKPVPDH----NEPVFRIDSVRKEDKGMYQC 198
+ TCK + NP W +P N +F + G Y C
Sbjct: 247 -----RMDVKLTCKADANPPATEYHWTTLNGSLPKGVEAQNRTLFFKGPINYSLAGTYIC 301
Query: 199 VIRNEQESAQASGELKLGGRFDPPVIKESFSD 230
N + E+ + + ++
Sbjct: 302 EATNPIGTRSGQVEVNI---TEAAALEHHHHH 330
Score = 56.7 bits (136), Expect = 1e-09
Identities = 22/171 (12%), Positives = 40/171 (23%), Gaps = 38/171 (22%)
Query: 132 SPPLAAGVEPTVQTIDFGRPAQFTCKYEGNP----VKTISWMKDGKPVPD---------- 177
P V ++ G C + + ++W K
Sbjct: 13 DPSQVVQVNDSMYGFI-GTDVVLHCSFANPLPSVKITQVTWQKSTNGSKQNVAIYNPSMG 71
Query: 178 -----------------HNEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLGGRFD 220
+ R+ + ED+G+Y C + +L L
Sbjct: 72 VSVLAPYRERVEFLRPSFTDGTIRLSRLELEDEGVYICEFATFPTGNR-ESQLNLTVMAK 130
Query: 221 PPVIKESFSD----ETLNPGPNYYFKCIAS-GNPTPEISWYLDGKKLVNAE 266
P E + C ++ G P +SW K +
Sbjct: 131 PTNWIEGTQAVLRAKKGQDDKVLVATCTSANGKPPSVVSWETRLKGEAEYQ 181
>2ens_A Advanced glycosylation END product-specific receptor;
beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 96
Score = 90.5 bits (225), Expect = 1e-23
Identities = 24/77 (31%), Positives = 34/77 (44%)
Query: 139 VEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNEPVFRIDSVRKEDKGMYQC 198
VEP + G TC+ P I WMKDG P+P PV + + +D+G Y C
Sbjct: 15 VEPEGGAVAPGGTVTLTCEVPAQPSPQIHWMKDGVPLPLPPSPVLILPEIGPQDQGTYSC 74
Query: 199 VIRNEQESAQASGELKL 215
V + Q S + +
Sbjct: 75 VATHSSHGPQESRAVSI 91
Score = 46.2 bits (110), Expect = 4e-07
Identities = 24/83 (28%), Positives = 33/83 (39%), Gaps = 18/83 (21%)
Query: 30 GESFALLCEAQEN-----MWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYL 84
G + L CE W K +G V +PL S LI+ E +D G Y
Sbjct: 25 GGTVTLTCEVPAQPSPQIHWMK--DG----VPLPLPP-----SPVLILPEIGPQDQGTYS 73
Query: 85 CVVNNSVGG--ESVETVLTVTAP 105
CV +S G ES +++ P
Sbjct: 74 CVATHSSHGPQESRAVSISIIEP 96
Score = 45.5 bits (108), Expect = 9e-07
Identities = 10/44 (22%), Positives = 15/44 (34%)
Query: 219 FDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKL 262
+ + + PG C P+P+I W DG L
Sbjct: 8 LEEVQLVVEPEGGAVAPGGTVTLTCEVPAQPSPQIHWMKDGVPL 51
>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell
adhesion, immunoglobulin domain; 3.2A {Drosophila
melanogaster} PDB: 2vra_A*
Length = 217
Score = 94.2 bits (234), Expect = 2e-23
Identities = 35/144 (24%), Positives = 54/144 (37%), Gaps = 17/144 (11%)
Query: 139 VEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNEPVFR-------------I 185
PT + PA CK EG P TI W KDG+PV + + R +
Sbjct: 14 EHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQFKDGALFFYRTM 73
Query: 186 DSVRKEDKGMYQCVIRNEQ-ESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCI 244
+++D G Y CV +N ++ L++ + D + G +C
Sbjct: 74 QGKKEQDGGEYWCVAKNRVGQAVSRHASLQI--AVLRDDFRVEPKDTRVAKGETALLECG 131
Query: 245 -ASGNPTPEISWYLDGKKLVNAER 267
G P P + W DG L + +
Sbjct: 132 PPKGIPEPTLIWIKDGVPLDDLKA 155
Score = 81.1 bits (200), Expect = 1e-18
Identities = 50/228 (21%), Positives = 82/228 (35%), Gaps = 57/228 (25%)
Query: 8 PVGFKAPTFSSV-SDIIRFKKPGGESFALLCEAQEN-----MWFKFIEGSSRKVAVPLND 61
+++P +D++ K E L C+ + WFK +G +
Sbjct: 4 AGQYQSPRIIEHPTDLVVKK---NEPATLNCKVEGKPEPTIEWFK--DGEPVSTNEKKSH 58
Query: 62 RVKQVSGTL----IIKEAKVEDSGKYLCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTI 117
RV+ G L ++ K +D G+Y CV N VG ++ A L + +
Sbjct: 59 RVQFKDGALFFYRTMQGKKEQDGGEYWCVAKNRVG-----QAVSRHASL------QIAVL 107
Query: 118 DFGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTC-KYEGNPVKTISWMKDGKPVP 176
F VEP + G A C +G P T+ W+KDG P+
Sbjct: 108 ----RDDFR------------VEPKDTRVAKGETALLECGPPKGIPEPTLIWIKDGVPLD 151
Query: 177 DHNEPVF--------------RIDSVRKEDKGMYQCVIRNEQESAQAS 210
D F I +V D+G Y+C+ +N + ++S
Sbjct: 152 DLKAMSFGASSRVRIVDGGNLLISNVEPIDEGNYKCIAQNLVGTRESS 199
Score = 53.7 bits (129), Expect = 8e-09
Identities = 15/53 (28%), Positives = 23/53 (43%)
Query: 215 LGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNAER 267
L G++ P I E +D + C G P P I W+ DG+ + E+
Sbjct: 3 LAGQYQSPRIIEHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEK 55
Score = 47.2 bits (112), Expect = 1e-06
Identities = 19/66 (28%), Positives = 27/66 (40%), Gaps = 4/66 (6%)
Query: 44 WFK--FIEGSSRKVAVPLNDRVKQV-SGTLIIKEAKVEDSGKYLCVVNNSVGG-ESVETV 99
W K + ++ + RV+ V G L+I + D G Y C+ N VG ES
Sbjct: 143 WIKDGVPLDDLKAMSFGASSRVRIVDGGNLLISNVEPIDEGNYKCIAQNLVGTRESSYAK 202
Query: 100 LTVTAP 105
L V
Sbjct: 203 LIVQVK 208
>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold,
transmembrane, MHC lipoprotein, polymorphism; 3.90A
{Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3
PDB: 1wip_A 1wiq_A 3t0e_E
Length = 363
Score = 96.4 bits (239), Expect = 3e-23
Identities = 38/266 (14%), Positives = 73/266 (27%), Gaps = 71/266 (26%)
Query: 30 GESFALLCEAQEN-----MWFK--------FIEGSSRKVAVPLNDRVK-------QVSGT 69
G++ L C A + W K LNDR Q +
Sbjct: 9 GDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFP 68
Query: 70 LIIKEAKVEDSGKYLCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKY 129
LIIK K+EDS Y+C V + + V +TA +
Sbjct: 69 LIIKNLKIEDSDTYICEVEDQKEEVQL-LVFGLTANSDTHLLQ----------------- 110
Query: 130 EISPPLAAGVEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNEPVFRIDSVR 189
G+ T + ++ + +
Sbjct: 111 -------------------GQSLTLTLESPPGSSPSVQCRSPRGKNI-QGGKTLSVSQLE 150
Query: 190 KEDKGMYQCVIRNEQESAQASGELKLGGRFDPPVIKE-------------SFSDETLNPG 236
+D G + C + Q+ + ++ + I +F+ E L
Sbjct: 151 LQDSGTWTCTVLQNQKKVEFKIDIVVLAFQKASSIVYKKEGEQVEFSFPLAFTVEKLTGS 210
Query: 237 PNYYFKCIASGNPTPEISWYLDGKKL 262
+++ + + I++ L K++
Sbjct: 211 GELWWQAERASSSKSWITFDLKNKEV 236
Score = 76.4 bits (187), Expect = 4e-16
Identities = 31/262 (11%), Positives = 67/262 (25%), Gaps = 67/262 (25%)
Query: 30 GESFALLCEAQEN-----MWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYL 84
G+S L E+ P ++ TL + + +++DSG +
Sbjct: 111 GQSLTLTLESPPGSSPSVQCRS-----------PRGKNIQG-GKTLSVSQLELQDSGTWT 158
Query: 85 CVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQ 144
C V + + + V A ++ G +F+
Sbjct: 159 CTVLQNQKKVEFKIDIVVLAFQ---KASSIVYKKEGEQVEFSF------------PLAFT 203
Query: 145 TIDFGRPAQFTCKYEGNP----VKTISWMKDGKPVP-DHNEPVFRID------------S 187
+ + E T V +P ++
Sbjct: 204 VEKLTGSGELWWQAERASSSKSWITFDLKNKEVSVKRVTQDPKLQMGKKLPLHLTLPQAL 263
Query: 188 VRKEDKGMYQCVIRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASG 247
+ G + + L V++ + + L C G
Sbjct: 264 PQYAGSGNLTLALEAKTGKLHQEVNLV--------VMRATQLQKNLT--------CEVWG 307
Query: 248 NPTPEI--SWYLDGKKLVNAER 267
+P++ S L+ K+ ++R
Sbjct: 308 PTSPKLMLSLKLENKEAKVSKR 329
Score = 71.8 bits (175), Expect = 1e-14
Identities = 19/145 (13%), Positives = 35/145 (24%), Gaps = 37/145 (25%)
Query: 149 GRPAQFTCKYEGNPVKTISWMKDGKP--------------------------VPDHNEPV 182
G + TC W + + D
Sbjct: 9 GDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFP 68
Query: 183 FRIDSVRKEDKGMYQCVIRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFK 242
I +++ ED Y C + +++E Q F SD L G +
Sbjct: 69 LIIKNLKIEDSDTYICEVEDQKEEVQL-------LVFGLTAN----SDTHLLQGQSLTLT 117
Query: 243 CIASGNPTPEISWYLDGKKLVNAER 267
+ +P + K + +
Sbjct: 118 LESPPGSSPSVQCRSPRGKNIQGGK 142
Score = 54.8 bits (131), Expect = 6e-09
Identities = 18/140 (12%), Positives = 31/140 (22%), Gaps = 42/140 (30%)
Query: 66 VSGTLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQF 125
+ TL + SG + G E L V
Sbjct: 255 LHLTLPQALPQYAGSGNLTLALEAKTGKLHQEVNLVVMRAT-------------QLQKNL 301
Query: 126 TCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNEPVFRI 185
TC+ P +S + K +
Sbjct: 302 TCEVWGPTS---------------------------PKLMLSLKLENKEAKVSKR--EKA 332
Query: 186 DSVRKEDKGMYQCVIRNEQE 205
V + GM+QC++ + +
Sbjct: 333 VWVLNPEAGMWQCLLSDSGQ 352
Score = 37.1 bits (85), Expect = 0.004
Identities = 6/47 (12%), Positives = 17/47 (36%), Gaps = 3/47 (6%)
Query: 59 LNDRVKQVSGTLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTVTAP 105
L ++ +VS ++G + C++++ V +
Sbjct: 319 LENKEAKVSKREKAVWVLNPEAGMWQCLLSD---SGQVLLESNIKVL 362
>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1
(isoform 2); hydrolase, immunoglobulin domain, nucleus,
protease; 1.15A {Homo sapiens}
Length = 91
Score = 89.7 bits (223), Expect = 3e-23
Identities = 19/72 (26%), Positives = 34/72 (47%)
Query: 139 VEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNEPVFRIDSVRKEDKGMYQC 198
VEPT Q + G C G+P+ W K+ P+ + ++ + V E +G Y C
Sbjct: 8 VEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHETKKLYMVPYVDLEHQGTYWC 67
Query: 199 VIRNEQESAQAS 210
+ N+++S +
Sbjct: 68 HVYNDRDSQDSK 79
Score = 49.6 bits (119), Expect = 2e-08
Identities = 11/47 (23%), Positives = 20/47 (42%)
Query: 221 PPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNAER 267
I + + L PG +C+A G+P P W+ + L + +
Sbjct: 3 KLQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHETK 49
Score = 48.1 bits (115), Expect = 7e-08
Identities = 17/82 (20%), Positives = 27/82 (32%), Gaps = 16/82 (19%)
Query: 30 GESFALLCEAQEN-----MWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYL 84
G + L C A + WFK +PL + ++ +E G Y
Sbjct: 18 GSTLVLQCVAVGSPIPHYQWFK--NE------LPLTH---ETKKLYMVPYVDLEHQGTYW 66
Query: 85 CVVNNSVGGESVETVLTVTAPL 106
C V N + + V + L
Sbjct: 67 CHVYNDRDSQDSKKVEIIIDEL 88
>2ch8_A BARF1, P33, 33 kDa early protein; viral protein, immunoglobulin
domain, oncogene; HET: NAG MAN; 2.3A {Epstein-barr
virus}
Length = 201
Score = 90.1 bits (223), Expect = 3e-22
Identities = 30/216 (13%), Positives = 51/216 (23%), Gaps = 65/216 (30%)
Query: 30 GESFALLCEAQEN--------MWFKF-------IEGSSRKVAVPLNDRVKQV-------- 66
GE L + WFK + G + + +
Sbjct: 6 GERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSAN 65
Query: 67 SGTLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFT 126
+ L++ A + G YLC + + + L+V P T+
Sbjct: 66 TFFLVVTAANISHDGNYLCRMKLGETEVTKQEHLSVVKP------LTL------------ 107
Query: 127 CKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNEPVFRI- 185
V TC P + W+ P +
Sbjct: 108 -----------SVHSERSQFPDFSVLTVTCTVNAFPHPHVQWLMPEGVEPAPTAANGGVM 156
Query: 186 ------------DSVRKEDKGMYQCVIRNEQESAQA 209
S+ K CV +N++E A
Sbjct: 157 KEKDGSLSVAVDLSLPKPWHLPVTCVGKNDKEEAHG 192
Score = 77.4 bits (190), Expect = 2e-17
Identities = 18/153 (11%), Positives = 37/153 (24%), Gaps = 15/153 (9%)
Query: 116 TIDFGRPAQFTCKYE---ISPPLAAG---VEPTVQTIDFGRPAQFTCKYEGNPVKTISWM 169
T G T + + P + + P + + GR + P + +
Sbjct: 2 TAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGR-MHHDVIFIEWPFRGFFDI 60
Query: 170 KDGKPVPDHNEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLGGRFDPPVIKESFS 229
N + + G Y C ++ + L + P +
Sbjct: 61 HR-----SANTFFLVVTAANISHDGNYLCRMKLGETEVTKQEHLSVVK---PLTLSVHSE 112
Query: 230 DETLNPGPNYYFKCIASGNPTPEISWYLDGKKL 262
C + P P + W +
Sbjct: 113 RSQFPDFSVLTVTCTVNAFPHPHVQWLMPEGVE 145
>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling
protein/receptor, growth regulation/complex, vitamin
K-dependent protein; HET: NAG; 3.3A {Homo sapiens}
Length = 195
Score = 89.2 bits (221), Expect = 6e-22
Identities = 33/151 (21%), Positives = 52/151 (34%), Gaps = 26/151 (17%)
Query: 139 VEPTVQTIDFGRPAQFTCKYE--GNPVKTISWMKDGKPVPDHNEP--------------- 181
P T G C+ + G P + W++DG+ + +
Sbjct: 7 GNPGNITGARGLTGTLRCQLQVQGEPP-EVHWLRDGQILELADSTQTQVPLGEDEQDDWI 65
Query: 182 ---VFRIDSVRKEDKGMYQCVIRNEQESAQ-ASGELKLGGRFDPPVIKESFSDETLNPGP 237
RI S++ D G YQC++ ++ G + L G P E D T+
Sbjct: 66 VVSQLRITSLQLSDTGQYQCLVFLGHQTFVSQPGYVGLEG---LPYFLEEPEDRTVAANT 122
Query: 238 NYYFKCIASGNPTP-EISWYLDGKKLVNAER 267
+ C A G P P ++ W D L A
Sbjct: 123 PFNLSCQAQGPPEPVDLLWLQDAVPLATAPG 153
Score = 85.3 bits (211), Expect = 2e-20
Identities = 28/197 (14%), Positives = 63/197 (31%), Gaps = 44/197 (22%)
Query: 30 GESFALLCEAQEN------MWFK------FIEGSSRKVAVPLNDRVKQV-SGTLIIKEAK 76
G + L C+ Q W + + + +V + +++ + L I +
Sbjct: 17 GLTGTLRCQLQVQGEPPEVHWLRDGQILELADSTQTQVPLGEDEQDDWIVVSQLRITSLQ 76
Query: 77 VEDSGKYLCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLA 136
+ D+G+Y C+V T ++ + ++ F
Sbjct: 77 LSDTGQYQCLVFLGHQ-----TFVSQPGYV------GLEG-----LPYFL---------- 110
Query: 137 AGVEPTVQTIDFGRPAQFTCKYEGNPV-KTISWMKDGKPVP--DHNEPVFRIDSVRKEDK 193
EP +T+ P +C+ +G P + W++D P+ + P +
Sbjct: 111 --EEPEDRTVAANTPFNLSCQAQGPPEPVDLLWLQDAVPLATAPGHGPQRSLHVPGLNKT 168
Query: 194 GMYQCVIRNEQESAQAS 210
+ C N + +
Sbjct: 169 SSFSCEAHNAKGVTTSR 185
Score = 41.4 bits (97), Expect = 8e-05
Identities = 16/83 (19%), Positives = 27/83 (32%), Gaps = 17/83 (20%)
Query: 30 GESFALLCEAQEN------MWFKFIEGSSRKVAVPLN-DRVKQVSGTLIIKEAKVEDSGK 82
F L C+AQ +W + AVPL +L + + +
Sbjct: 121 NTPFNLSCQAQGPPEPVDLLWLQD--------AVPLATAPGHGPQRSLHV--PGLNKTSS 170
Query: 83 YLCVVNNSVGGESVETVLTVTAP 105
+ C +N+ G + T P
Sbjct: 171 FSCEAHNAKGVTTSRTATITVLP 193
Score = 38.0 bits (88), Expect = 0.001
Identities = 10/49 (20%), Positives = 17/49 (34%), Gaps = 1/49 (2%)
Query: 220 DPPVIKESFSDETLNPGPNYYFKCIAS-GNPTPEISWYLDGKKLVNAER 267
+ + + T G +C PE+ W DG+ L A+
Sbjct: 1 EESPFVGNPGNITGARGLTGTLRCQLQVQGEPPEVHWLRDGQILELADS 49
>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor
tyrosine kinase, class III, recep ligand complex,
cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A
{Mus musculus}
Length = 290
Score = 91.3 bits (226), Expect = 8e-22
Identities = 35/245 (14%), Positives = 67/245 (27%), Gaps = 53/245 (21%)
Query: 30 GESFALLCEAQENMWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYLCVVNN 89
G++ +L C + + + F N+ V+ I ++A+ +G Y C +N
Sbjct: 27 GDTLSLTCIDPDFVRWTF--------KTYFNEMVENKKNEWIQEKAEATRTGTYTCSNSN 78
Query: 90 SVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDFG 149
+ + + PA+ +
Sbjct: 79 GLT--------------------SSIYVFVRDPAKLF------------LVGLPLFGKED 106
Query: 150 RPAQFTCKYEGNPVKTISWMK-DGKPVPDH------NEPVFRIDSV-RKEDKGMYQCVIR 201
A C V S ++ DGK +P + I +V R + +C +
Sbjct: 107 SDALVRCPLTDPQVSQYSLIECDGKSLPTDLTFVPNPKAGITIKNVKRAYHRLCVRCAAQ 166
Query: 202 NEQESAQASGELKL---GGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTP-EISWYL 257
+ S + L PV+ + L G + C T W
Sbjct: 167 RDGTW-LHSDKFTLKVREAIKAIPVVSVPETSHLLKKGDTFTVVCTIKDVSTSVNSMWLK 225
Query: 258 DGKKL 262
+
Sbjct: 226 MNPQP 230
Score = 68.6 bits (167), Expect = 1e-13
Identities = 22/142 (15%), Positives = 40/142 (28%), Gaps = 14/142 (9%)
Query: 129 YEISPPLAAGVEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKP--VPDHNEPVFRID 186
E SPP + + ++ G TC + W + ++ + + +
Sbjct: 8 GEPSPPSIHPAQSEL-IVEAGDTLSLTCIDPD----FVRWTFKTYFNEMVENKKNEWIQE 62
Query: 187 SVRKEDKGMYQCVIRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIAS 246
G Y C N S S + + DP + + +C +
Sbjct: 63 KAEATRTGTYTCSNSNGLTS---SIYVFV---RDPAKLFLVGLPLFGKEDSDALVRCPLT 116
Query: 247 GNPTPEISWY-LDGKKLVNAER 267
+ S DGK L
Sbjct: 117 DPQVSQYSLIECDGKSLPTDLT 138
Score = 65.5 bits (159), Expect = 1e-12
Identities = 27/207 (13%), Positives = 44/207 (21%), Gaps = 49/207 (23%)
Query: 30 GESFALLCEAQEN-----MWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYL 84
+ C + + + + L +G I +
Sbjct: 106 DSDALVRCPLTDPQVSQYSLIEC---DGKSLPTDLTFVPNPKAGITIKNVKRAYHRLCVR 162
Query: 85 CVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQ 144
C G T+ A P V V T
Sbjct: 163 CAAQRD-GTWLHSDKFTLKVREAIKAIPVVS-----------------------VPETSH 198
Query: 145 TIDFGRPAQFTCK-YEGNPVKTISWMKDGKPVPDHNEPVFR----------------IDS 187
+ G C + + W+K + I S
Sbjct: 199 LLKKGDTFTVVCTIKDVSTSVNSMWLKMNPQPQHIAQVKHNSWHRGDFNYERQETLTISS 258
Query: 188 VRKEDKGMYQCVIRNEQESAQASGELK 214
R +D G++ C N SA + LK
Sbjct: 259 ARVDDSGVFMCYANNTFGSANVTTTLK 285
Score = 55.9 bits (134), Expect = 2e-09
Identities = 23/84 (27%), Positives = 38/84 (45%), Gaps = 11/84 (13%)
Query: 30 GESFALLCEAQEN------MWFK-----FIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVE 78
G++F ++C ++ MW K + + D + TL I A+V+
Sbjct: 203 GDTFTVVCTIKDVSTSVNSMWLKMNPQPQHIAQVKHNSWHRGDFNYERQETLTISSARVD 262
Query: 79 DSGKYLCVVNNSVGGESVETVLTV 102
DSG ++C NN+ G +V T L V
Sbjct: 263 DSGVFMCYANNTFGSANVTTTLKV 286
>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A
{Homo sapiens}
Length = 207
Score = 88.5 bits (219), Expect = 1e-21
Identities = 31/202 (15%), Positives = 64/202 (31%), Gaps = 33/202 (16%)
Query: 30 GESFALLCEAQEN------MWFK----FIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVED 79
+A++ + EG K+ + N + + +++ + ED
Sbjct: 17 KGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGI----IEMFMEKLQDED 72
Query: 80 SGKYLCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGV 139
G Y + + VL E Q ++ R P V
Sbjct: 73 EGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRK---------QGPHF--V 121
Query: 140 EPTVQTIDFGRPAQFTCKYEGNPVKT-ISWMKDGKPVPDHNEPVF-------RIDSVRKE 191
E + CK +T I W KD + + + F I K+
Sbjct: 122 EYLSWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFKDGICTLLITEFSKK 181
Query: 192 DKGMYQCVIRNEQESAQASGEL 213
D G+Y+ ++++++ ++ +L
Sbjct: 182 DAGIYEVILKDDRGKDKSRLKL 203
Score = 70.0 bits (171), Expect = 1e-14
Identities = 19/157 (12%), Positives = 51/157 (32%), Gaps = 30/157 (19%)
Query: 140 EPTVQTIDFGRPAQFTCKYE-GNPVKTISWMKDGKPVPDHNEPVFR-----------IDS 187
I +F + E + ++++ + K + + + ++
Sbjct: 8 SELAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEK 67
Query: 188 VRKEDKGMYQCVIRNEQESAQAS----------------GELKLGGRFDPPVIKESFSDE 231
++ ED+G Y +++ + + ++ + + R P E +
Sbjct: 68 LQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVE-YLSW 126
Query: 232 TLNPGPNYYFKCIASGNPTP-EISWYLDGKKLVNAER 267
+ N KC + I WY D +++ E+
Sbjct: 127 EVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEK 163
Score = 41.8 bits (98), Expect = 7e-05
Identities = 15/83 (18%), Positives = 32/83 (38%), Gaps = 14/83 (16%)
Query: 30 GESFALLCEAQEN------MWFKFIEGSSRKVAVPLNDRVKQVSG--TLIIKEAKVEDSG 81
+ L C+ +W+K + + ++++ G TL+I E +D+G
Sbjct: 131 ECNVLLKCKVANIKKETHIVWYK------DEREISVDEKHDFKDGICTLLITEFSKKDAG 184
Query: 82 KYLCVVNNSVGGESVETVLTVTA 104
Y ++ + G + L A
Sbjct: 185 IYEVILKDDRGKDKSRLKLVDEA 207
Score = 36.8 bits (85), Expect = 0.004
Identities = 6/47 (12%), Positives = 18/47 (38%)
Query: 221 PPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNAER 267
P K + E L G ++ + ++++ + K++ +
Sbjct: 3 DPFTKSELAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPK 49
>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation,
phosphorylation, disease MU neuronal development,
immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens}
PDB: 2v9q_A
Length = 212
Score = 88.3 bits (219), Expect = 2e-21
Identities = 39/147 (26%), Positives = 58/147 (39%), Gaps = 20/147 (13%)
Query: 139 VEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPV-PDHNEPVFR------------- 184
P+ + G PA CK EG P TI W K G+ V D ++P
Sbjct: 14 EHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSLFFLR 73
Query: 185 --IDSVRKEDKGMYQCVIRNEQ-ESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYF 241
+ D+G+Y CV RN E+ L++ +++ SD + G
Sbjct: 74 IVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAIL--RDDFRQNPSDVMVAVGEPAVM 131
Query: 242 KCIA-SGNPTPEISWYLDGKKLVNAER 267
+C G+P P ISW DG L + +
Sbjct: 132 ECQPPRGHPEPTISWKKDGSPLDDKDE 158
Score = 76.4 bits (188), Expect = 5e-17
Identities = 49/206 (23%), Positives = 71/206 (34%), Gaps = 60/206 (29%)
Query: 30 GESFALLCEAQEN-----MWFK--------FIEGSSRKVAVPLNDRVKQVSGTLII---- 72
GE L C+A+ W+K + S ++ +P SG+L
Sbjct: 24 GEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLP--------SGSLFFLRIV 75
Query: 73 -KEAKVEDSGKYLCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEI 131
D G Y+CV N +G ++ A L V + F
Sbjct: 76 HGRKSRPDEGVYVCVARNYLG-----EAVSHDASL------EVAIL----RDDFR----- 115
Query: 132 SPPLAAGVEPTVQTIDFGRPAQFTCK-YEGNPVKTISWMKDGKPVPDHNEPVF------R 184
P+ + G PA C+ G+P TISW KDG P+ D +E +
Sbjct: 116 -------QNPSDVMVAVGEPAVMECQPPRGHPEPTISWKKDGSPLDDKDERITIRGGKLM 168
Query: 185 IDSVRKEDKGMYQCVIRNEQESAQAS 210
I RK D G Y CV N ++
Sbjct: 169 ITYTRKSDAGKYVCVGTNMVGERESE 194
Score = 52.5 bits (126), Expect = 2e-08
Identities = 17/47 (36%), Positives = 23/47 (48%)
Query: 221 PPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNAER 267
PP I E SD ++ G C A G PTP I WY G+++ +
Sbjct: 9 PPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKD 55
Score = 49.8 bits (119), Expect = 2e-07
Identities = 24/84 (28%), Positives = 33/84 (39%), Gaps = 14/84 (16%)
Query: 30 GESFALLCEAQENM------WFKFIEGSSRKVAVPLNDRVKQV-SGTLIIKEAKVEDSGK 82
GE + C+ W K +G + D + G L+I + D+GK
Sbjct: 126 GEPAVMECQPPRGHPEPTISWKK--DG----SPLDDKDERITIRGGKLMITYTRKSDAGK 179
Query: 83 YLCVVNNSVGG-ESVETVLTVTAP 105
Y+CV N VG ES LTV
Sbjct: 180 YVCVGTNMVGERESEVAELTVLER 203
>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human
coxsackievirus A21, cryo-electron
microscopy,virus-receptor complex, icosahedral virus;
HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3
b.1.1.4 b.1.1.4 b.1.1.4
Length = 450
Score = 89.9 bits (222), Expect = 9e-21
Identities = 34/243 (13%), Positives = 64/243 (26%), Gaps = 42/243 (17%)
Query: 30 GESFALLCEAQEN------MWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKY 83
++C + V + ++ + ED G
Sbjct: 203 DTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPTVTYGNDSFSAKASVSVT---AEDEGTQ 259
Query: 84 LCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTV 143
+G +S ET+ TVT Y P +P V
Sbjct: 260 RLTCAVILGNQSQETLQTVTI------------------------YSFPAPNVILTKPEV 295
Query: 144 QTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNEPVFRIDSVRKEDKGMYQCVIRNE 203
G C+ T++ + P + + +++ + C E
Sbjct: 296 SE---GTEVTVKCEAHPRAKVTLNGVPAQPLGP---RAQLLLKATPEDNGRSFSCSATLE 349
Query: 204 --QESAQASGELKLGGRFDPPVIKESFS-DETLNPGPNYYFKCIASGNPTPEISWYLDGK 260
+ + +L + P + + + T C A GNP PE+ DG
Sbjct: 350 VAGQLIHKNQTRELRVLYGPRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGT 409
Query: 261 KLV 263
+
Sbjct: 410 FPL 412
Score = 78.8 bits (193), Expect = 6e-17
Identities = 29/192 (15%), Positives = 48/192 (25%), Gaps = 50/192 (26%)
Query: 30 GESFALLCEAQEN---MWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYLCV 86
G + CEA L++K ++ + C
Sbjct: 298 GTEVTVKCEAHPRAKVTLNGVPAQPLGP------------RAQLLLKATPEDNGRSFSCS 345
Query: 87 VNNSVGGESV----ETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPT 142
V G+ + L V P L P
Sbjct: 346 ATLEVAGQLIHKNQTRELRVLYG---------------------------PRLDERDCPG 378
Query: 143 VQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNEPVFRIDSVRKEDKGMYQCVIRN 202
T C+ GNP+ + +KDG P+ +V ++ +G Y C R+
Sbjct: 379 NWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPL----PIGESVTVTRDLEGTYLCRARS 434
Query: 203 EQESAQASGELK 214
Q +
Sbjct: 435 TQGEVTREVTVN 446
Score = 75.3 bits (184), Expect = 1e-15
Identities = 32/249 (12%), Positives = 64/249 (25%), Gaps = 46/249 (18%)
Query: 30 GESFALLCEAQENMWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYLCVVNN 89
G S + C + + +P + + + + + + V++ + +C N
Sbjct: 14 GGSVLVTCSTSCDQ----PMLLGIETPLPKKELLLPGNNRKVYELSNVQEDSQPMCYSNC 69
Query: 90 SVGGESVETVLTV-TAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDF 148
G + +T LTV P + P G+ C+ E P
Sbjct: 70 PDGQSTAKTFLTVYWTPERVELAPLPSWQPVGKNLTLRCQVEGGAPR------------- 116
Query: 149 GRPAQFTCKYEGNPVKTISWMKDGKPVPDHN------EPVFRIDSVRKEDKGMYQCVIRN 202
T+ ++ K + E + R + C
Sbjct: 117 -------------ANLTVVLLRGEKELKREPAVGEPAEVTTTVLVRRDHHGANFSCRTEL 163
Query: 203 EQESA------QASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGN---PTPEI 253
+ S +L P + S L C G ++
Sbjct: 164 DLRPQGLELFENTSAPYQLQTFVLPATPPQLVSPRVLEVDTQGTVVCSLDGLFPVSEAQV 223
Query: 254 SWYLDGKKL 262
L ++L
Sbjct: 224 HLALGDQRL 232
Score = 65.3 bits (158), Expect = 2e-12
Identities = 20/133 (15%), Positives = 41/133 (30%), Gaps = 11/133 (8%)
Query: 139 VEPTVQTIDFGRPAQFTCKYEGNPVKTISW----MKDGKPVPDHNEPVFRIDSVRKEDKG 194
V P+ + G TC + + K +P +N V+ + +V+++
Sbjct: 4 VSPSKVILPRGGSVLVTCSTSCDQPMLLGIETPLPKKELLLPGNNRKVYELSNVQED--S 61
Query: 195 MYQCVIRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGN---PTP 251
C + A L + + P ++ + G N +C G
Sbjct: 62 QPMCYSNCPDGQSTAKTFLTV--YWTPERVELAPLPSWQPVGKNLTLRCQVEGGAPRANL 119
Query: 252 EISWYLDGKKLVN 264
+ K+L
Sbjct: 120 TVVLLRGEKELKR 132
Score = 41.8 bits (97), Expect = 2e-04
Identities = 15/98 (15%), Positives = 26/98 (26%), Gaps = 20/98 (20%)
Query: 13 APTFSSVSDIIRFKKPGGESFALLCEAQEN-----MWFKFIEGSSRKVAVPLNDRVKQVS 67
P + P +C+A N K +G+
Sbjct: 368 GPRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLK--DGT-------------FPL 412
Query: 68 GTLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTVTAP 105
+ G YLC ++ G + E + V +P
Sbjct: 413 PIGESVTVTRDLEGTYLCRARSTQGEVTREVTVNVLSP 450
>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion;
2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 184
Score = 85.1 bits (210), Expect = 2e-20
Identities = 27/125 (21%), Positives = 40/125 (32%), Gaps = 11/125 (8%)
Query: 137 AGVEPTVQTIDFGRPAQFTCKYEGNPVKTIS--WMKDGKPVPDHNEP--VFRIDSVRKED 192
A D G TC + + W+K G + + P +
Sbjct: 1 AAGTVFTTVEDLGSKILLTCSLNDSATEVTGHRWLKGGVVLKEDALPGQKTEFKVDSDDQ 60
Query: 193 KGMYQCVIRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNP-TP 251
G Y CV E A+ +L PP +K S E +N G C + P
Sbjct: 61 WGEYSCVFLPE-PMGTANIQLH-----GPPRVKAVKSSEHINEGETAMLVCKSESVPPVT 114
Query: 252 EISWY 256
+ +WY
Sbjct: 115 DWAWY 119
Score = 69.3 bits (169), Expect = 1e-14
Identities = 35/209 (16%), Positives = 54/209 (25%), Gaps = 65/209 (31%)
Query: 30 GESFALLCEAQEN-------MWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGK 82
G L C ++ W K G V L + K + G+
Sbjct: 13 GSKILLTCSLNDSATEVTGHRWLK--GG------VVLKEDALP-GQKTEFKVDSDDQWGE 63
Query: 83 YLCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPT 142
Y CV G + I P + +
Sbjct: 64 YSCVFLPEPMGTA--------------------NIQLHGPPRVK------------AVKS 91
Query: 143 VQTIDFGRPAQFTCKYEGNP-VKTISWMKDGKPV---------------PDHNEPVFRID 186
+ I+ G A CK E P V +W K I+
Sbjct: 92 SEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQGRSELHIE 151
Query: 187 SV-RKEDKGMYQCVIRNEQESAQASGELK 214
++ + D G Y+C + + S QA L+
Sbjct: 152 NLNMEADPGQYRCNGTSSKGSDQAIITLR 180
Score = 52.0 bits (124), Expect = 2e-08
Identities = 19/84 (22%), Positives = 33/84 (39%), Gaps = 11/84 (13%)
Query: 30 GESFALLCEAQEN------MWFKFIEGSSRKVAVPLNDRVKQVS----GTLIIKEAKVE- 78
GE+ L+C+++ W+K + + + R S L I+ +E
Sbjct: 98 GETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQGRSELHIENLNMEA 157
Query: 79 DSGKYLCVVNNSVGGESVETVLTV 102
D G+Y C +S G + L V
Sbjct: 158 DPGQYRCNGTSSKGSDQAIITLRV 181
Score = 31.9 bits (72), Expect = 0.14
Identities = 6/33 (18%), Positives = 9/33 (27%), Gaps = 2/33 (6%)
Query: 232 TLNPGPNYYFKCIASGNPTPEIS--WYLDGKKL 262
+ G C + + T W G L
Sbjct: 9 VEDLGSKILLTCSLNDSATEVTGHRWLKGGVVL 41
>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell
adhesion molecule, immunoglobuline superfamily,
alternative splicing, cell adhesion; 2.19A {Mus
musculus} PDB: 3mj7_B* 2npl_X
Length = 214
Score = 84.7 bits (209), Expect = 5e-20
Identities = 27/163 (16%), Positives = 50/163 (30%), Gaps = 35/163 (21%)
Query: 59 LNDRVKQVSGTLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTID 118
++ VK ++ + ++ D G Y C V + G + + +LTV + + +
Sbjct: 75 TSNDVKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKFLLTVLVKPSGTRCFVDGSEE 134
Query: 119 FGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVP-- 176
G + C+ + EG+ W K
Sbjct: 135 IGNDFKLKCEPK----------------------------EGSLPLQFEWQKLSDSQTMP 166
Query: 177 -----DHNEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELK 214
+ PV + + E G Y C ++N S Q L
Sbjct: 167 TPWLAEMTSPVISVKNASSEYSGTYSCTVQNRVGSDQCMLRLD 209
Score = 66.6 bits (162), Expect = 2e-13
Identities = 25/177 (14%), Positives = 46/177 (25%), Gaps = 18/177 (10%)
Query: 100 LTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPT---VQTIDFGRPAQFTC 156
L++T P G A CK+ +SP ++ + +
Sbjct: 1 LSITTP------EQRIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIIL 54
Query: 157 KYEGNPVKTISWMKDG-----KPVPDHNEPVFRIDSVRKEDKGMYQCVIRNEQESAQASG 211
G + + +++ D G YQC ++ A
Sbjct: 55 YSGDKIYDNYYPDLKGRVHFTSNDVKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKF 114
Query: 212 ELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIAS-GNPTPEISWYLDGKKLVNAER 267
L + P F D + G ++ KC G+ + W
Sbjct: 115 LLTVLV---KPSGTRCFVDGSEEIGNDFKLKCEPKEGSLPLQFEWQKLSDSQTMPTP 168
Score = 56.2 bits (135), Expect = 8e-10
Identities = 25/82 (30%), Positives = 31/82 (37%), Gaps = 10/82 (12%)
Query: 30 GESFALLCEAQENM------WFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKY 83
G F L CE +E W K S +P + S + +K A E SG Y
Sbjct: 136 GNDFKLKCEPKEGSLPLQFEWQK----LSDSQTMPTPWLAEMTSPVISVKNASSEYSGTY 191
Query: 84 LCVVNNSVGGESVETVLTVTAP 105
C V N VG + L V P
Sbjct: 192 SCTVQNRVGSDQCMLRLDVVPP 213
>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural
plasticity, cell-surface dimerizatio adhesion; HET: NAG
FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4
PDB: 1p53_A*
Length = 265
Score = 83.2 bits (205), Expect = 4e-19
Identities = 35/244 (14%), Positives = 62/244 (25%), Gaps = 44/244 (18%)
Query: 30 GESFALLCEAQ------ENMWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKY 83
++C E + V + ++ + A+ E + +
Sbjct: 18 DTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPTVTYGNDSFSAKASVSVT-AEDEGTQRL 76
Query: 84 LCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTV 143
C V + +T+ Y P +P V
Sbjct: 77 TCAVILGNQSQETLQTVTI--------------------------YSFPAPNVILTKPEV 110
Query: 144 QTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNEPVFRIDSVRKEDKGM-YQCVIRN 202
G C E +P +G P + ED G + C
Sbjct: 111 SE---GTEVTVKC--EAHP--RAKVTLNGVPAQPLGPRAQLLLKATPEDNGRSFSCSATL 163
Query: 203 E--QESAQASGELKLGGRFDPPVIKESF-SDETLNPGPNYYFKCIASGNPTPEISWYLDG 259
E + + +L + P + + + T C A GNP PE+ DG
Sbjct: 164 EVAGQLIHKNQTRELRVLYGPRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDG 223
Query: 260 KKLV 263
+
Sbjct: 224 TFPL 227
Score = 77.8 bits (191), Expect = 4e-17
Identities = 31/185 (16%), Positives = 52/185 (28%), Gaps = 38/185 (20%)
Query: 30 GESFALLCEAQEN-MWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYLCVVN 88
G + CEA G + P L++K ++ + C
Sbjct: 113 GTEVTVKCEAHPRAKVTL--NGVPAQPLGP--------RAQLLLKATPEDNGRSFSCSAT 162
Query: 89 NSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDF 148
V G+ + T L P + D P T
Sbjct: 163 LEVAGQLIHKNQTRE--LRVLYGPRLDERD---------------------CPGNWTWPE 199
Query: 149 GRPAQFTCKYEGNPVKTISWMKDGKPVPDHNEPVFRIDSVRKEDKGMYQCVIRNEQESAQ 208
C+ GNP+ + +KDG P+ +V ++ +G Y C R+ Q
Sbjct: 200 NSQQTPMCQAWGNPLPELKCLKDGTFP----LPIGESVTVTRDLEGTYLCRARSTQGEVT 255
Query: 209 ASGEL 213
+
Sbjct: 256 REVTV 260
Score = 42.3 bits (99), Expect = 7e-05
Identities = 15/98 (15%), Positives = 26/98 (26%), Gaps = 20/98 (20%)
Query: 13 APTFSSVSDIIRFKKPGGESFALLCEAQEN-----MWFKFIEGSSRKVAVPLNDRVKQVS 67
P + P +C+A N K +G+
Sbjct: 183 GPRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLK--DGT-------------FPL 227
Query: 68 GTLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTVTAP 105
+ G YLC ++ G + E + V +P
Sbjct: 228 PIGESVTVTRDLEGTYLCRARSTQGEVTREVTVNVLSP 265
>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody,
immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S
3cm9_S 3chn_J 3cm9_J
Length = 585
Score = 84.7 bits (208), Expect = 8e-19
Identities = 35/228 (15%), Positives = 67/228 (29%), Gaps = 33/228 (14%)
Query: 57 VPLNDRVKQVSGTLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTVTAPLAAGVEPTVQT 116
L + + + + I + +DSG+Y C + + G S + L V+ + V T
Sbjct: 64 ANLTNFPENGTFVVNIAQLSQDDSGRYKCGLGINSRGLSFDVSLEVSQGPGLLNDTKVYT 123
Query: 117 IDFGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPV- 175
+D GR C ++ + K G +
Sbjct: 124 VDLGRTVTINCPFKTENA------QKR---------KSLYKQIGLYPVLVIDSSGYVNPN 168
Query: 176 -----------PDHNEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLGGRFDPPVI 224
I+ +R D G Y C ++ S + + +L++ V
Sbjct: 169 YTGRIRLDIQGTGQLLFSVVINQLRLSDAGQYLCQAGDDSNSNKKNADLQVLKPEPELVY 228
Query: 225 KESFSDETLN------PGPNYYFKCIASGNPTPEISWYLDGKKLVNAE 266
++ T + F C S ++ GK+ E
Sbjct: 229 EDLRGSVTFHCALGPEVANVAKFLCRQSSGENCDVVVNTLGKRAPAFE 276
Score = 77.3 bits (189), Expect = 3e-16
Identities = 37/266 (13%), Positives = 71/266 (26%), Gaps = 21/266 (7%)
Query: 13 APTFSSVSDIIRFKKPGGESFALLCEAQENMWFKFIEGSSRKVAVPLNDRV------KQV 66
SV+ LC + + K A R+ K
Sbjct: 229 EDLRGSVTFHCALGPEVANVAKFLCRQSSGENCDVVVNTLGKRAPAFEGRILLNPQDKDG 288
Query: 67 SGTLIIKEAKVEDSGKYLCVVNNSVGGESVETVLT----VTAPLAAGVEPTVQTIDFGRP 122
S +++I + ED+G+YLC ++ + + V PTV G
Sbjct: 289 SFSVVITGLRKEDAGRYLCGAHSDGQLQEGSPIQAWQLFVNEESTIPRSPTVVKGVAGSS 348
Query: 123 AQFTCKYEISPPLAAGVEPTVQT-IDFGRPAQFTCKYEGNPVKTISWMKDGK----PVPD 177
C Y +++ + C + + +G+ P
Sbjct: 349 VAVLCPYNRKES------KSIKYWCLWEGAQNGRCPLLVDSEGWVKAQYEGRLSLLEEPG 402
Query: 178 HNEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGP 237
+ ++ + D G Y C+ + + G + V +
Sbjct: 403 NGTFTVILNQLTSRDAGFYWCLTNGDTLWRTTVEIKIIEGEPNLKVPGNVTAVLGETLKV 462
Query: 238 NYYFKCIASGNPTPEISWYLDGKKLV 263
+F C S W G + +
Sbjct: 463 PCHFPCKFSSYEKYWCKWNNTGCQAL 488
Score = 61.9 bits (149), Expect = 3e-11
Identities = 23/168 (13%), Positives = 44/168 (26%), Gaps = 42/168 (25%)
Query: 57 VPLNDRVKQVSGTLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTVTAPLAAGVEPTVQT 116
+ L + + T+I+ + D+G Y C+ N + + P T
Sbjct: 395 LSLLEEPGNGTFTVILNQLTSRDAGFYWCLTNGD-TLWRTTVEIKIIEGEPNLKVPGNVT 453
Query: 117 IDFGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPV- 175
G + C + CK+ W G
Sbjct: 454 AVLGETLKVPCHFP-------------------------CKFSSYEKYWCKWNNTGCQAL 488
Query: 176 -------------PDHNEPVF--RIDSVRKEDKGMYQCVIRNEQESAQ 208
D N + ++ V + D+G Y C ++ +
Sbjct: 489 PSQDEGPSKAFVNCDENSRLVSLTLNLVTRADEGWYWCGVKQGHFYGE 536
Score = 44.6 bits (104), Expect = 2e-05
Identities = 13/65 (20%), Positives = 20/65 (30%), Gaps = 3/65 (4%)
Query: 67 SGTLIIKEAKVEDSGKYLCVV-NNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQF 125
+L + D G Y C V GE+ + V AAG ++ A
Sbjct: 508 LVSLTLNLVTRADEGWYWCGVKQGHFYGETAAVYVAVEERKAAGSRDV--SLAKADAAPD 565
Query: 126 TCKYE 130
+
Sbjct: 566 EKVLD 570
>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral
protein-immune system compl; HET: NAG SUC; 1.99A {Homo
sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B*
2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C*
3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A
3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ...
Length = 184
Score = 80.4 bits (198), Expect = 1e-18
Identities = 32/205 (15%), Positives = 54/205 (26%), Gaps = 58/205 (28%)
Query: 30 GESFALLCEAQEN-----MWFK--------FIEGSSRKVAVPLNDRVK-------QVSGT 69
G++ L C A + W K LNDR Q +
Sbjct: 10 GDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFP 69
Query: 70 LIIKEAKVEDSGKYLCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKY 129
LIIK K+EDS Y+C V + E V +TA
Sbjct: 70 LIIKNLKIEDSDTYICEVEDQK-EEVQLLVFGLTAN------------------------ 104
Query: 130 EISPPLAAGVEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNEPVFRIDSVR 189
+ G+ T + ++ + +
Sbjct: 105 ---SD---------THLLQGQSLTLTLESPPGSSPSVQCRSPRGKNI-QGGKTLSVSQLE 151
Query: 190 KEDKGMYQCVIRNEQESAQASGELK 214
+D G + C + Q+ + ++
Sbjct: 152 LQDSGTWTCTVLQNQKKVEFKIDIV 176
Score = 75.0 bits (184), Expect = 9e-17
Identities = 19/145 (13%), Positives = 35/145 (24%), Gaps = 37/145 (25%)
Query: 149 GRPAQFTCKYEGNPVKTISWMKDG--------------------------KPVPDHNEPV 182
G + TC W + + D
Sbjct: 10 GDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFP 69
Query: 183 FRIDSVRKEDKGMYQCVIRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFK 242
I +++ ED Y C + +++E Q F SD L G +
Sbjct: 70 LIIKNLKIEDSDTYICEVEDQKEEVQL-------LVFGLTAN----SDTHLLQGQSLTLT 118
Query: 243 CIASGNPTPEISWYLDGKKLVNAER 267
+ +P + K + +
Sbjct: 119 LESPPGSSPSVQCRSPRGKNIQGGK 143
Score = 47.7 bits (113), Expect = 7e-07
Identities = 14/80 (17%), Positives = 26/80 (32%), Gaps = 17/80 (21%)
Query: 30 GESFALLCEAQEN-----MWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYL 84
G+S L E+ + Q TL + + +++DSG +
Sbjct: 112 GQSLTLTLESPPGSSPSVQCRSP------------RGKNIQGGKTLSVSQLELQDSGTWT 159
Query: 85 CVVNNSVGGESVETVLTVTA 104
C V + + + V A
Sbjct: 160 CTVLQNQKKVEFKIDIVVLA 179
>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding,
disease MU ectodermal dysplasia, glycoprotein,
heparin-binding, immuno domain, kinase; 1.96A {Homo
sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A
Length = 100
Score = 77.9 bits (192), Expect = 1e-18
Identities = 23/86 (26%), Positives = 36/86 (41%), Gaps = 10/86 (11%)
Query: 139 VEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVP----------DHNEPVFRIDSV 188
+E + + +F C GNP+ T+ W+K+GK + ++SV
Sbjct: 13 MEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESV 72
Query: 189 RKEDKGMYQCVIRNEQESAQASGELK 214
DKG Y CV+ NE S + L
Sbjct: 73 VPSDKGNYTCVVENEYGSINHTYHLD 98
Score = 49.4 bits (118), Expect = 4e-08
Identities = 22/101 (21%), Positives = 36/101 (35%), Gaps = 14/101 (13%)
Query: 12 KAPTFSSVSDIIR--FKKPGGESFALLCEAQEN-----MWFK---FIEGSSRKVAVPLND 61
+AP +++ + + P + C A N W K + R
Sbjct: 3 RAPYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGY---- 58
Query: 62 RVKQVSGTLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTV 102
+V+ +LI++ D G Y CVV N G + L V
Sbjct: 59 KVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDV 99
Score = 46.7 bits (111), Expect = 3e-07
Identities = 11/39 (28%), Positives = 16/39 (41%)
Query: 229 SDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNAER 267
+ F+C A GNP P + W +GK+ R
Sbjct: 16 RLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHR 54
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA,
receptor-ligand complex transferase; HET: NAG NDG MAN
BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Length = 347
Score = 81.3 bits (200), Expect = 5e-18
Identities = 19/137 (13%), Positives = 37/137 (27%), Gaps = 15/137 (10%)
Query: 139 VEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNEPV--------FRIDSVRK 190
V+ ++D G C+ EG ++ W+ +
Sbjct: 163 VQVPNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSATVMKSGGLPSLGLTLANVTSD 222
Query: 191 EDKGMYQCVIRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPT 250
++ C N+ A+ S ++ S T ++ G P
Sbjct: 223 LNRKNVTCWAENDVGRAEVSVQVN-------VSFPASVQLHTAVEMHHWCIPFSVDGQPA 275
Query: 251 PEISWYLDGKKLVNAER 267
P + W +G L
Sbjct: 276 PSLRWLFNGSVLNETSF 292
Score = 73.6 bits (180), Expect = 3e-15
Identities = 27/214 (12%), Positives = 49/214 (22%), Gaps = 60/214 (28%)
Query: 30 GESFALLCEAQEN-----MWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYL 84
G+ L C+ + W + A + G + +
Sbjct: 173 GDDVLLRCQVEGRGLEQAGWIL---TELEQSATVMKSGGLPSLGLTLANVTSDLNRKNVT 229
Query: 85 CVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQ 144
C N VG V + V+ P +
Sbjct: 230 CWAENDVGRAEVSVQVNVSFP---------------------------------ASVQLH 256
Query: 145 TIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNEP----------------VFRIDSV 188
T +G P ++ W+ +G + + + R++
Sbjct: 257 TAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQP 316
Query: 189 RKEDKGMYQCVIRNEQESAQASGELKLGGRFDPP 222
+ G Y + N A AS D P
Sbjct: 317 THVNNGNYTLLAANPFGQASASIMAAF---MDNP 347
Score = 44.3 bits (104), Expect = 2e-05
Identities = 7/45 (15%), Positives = 16/45 (35%)
Query: 220 DPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVN 264
P +K + +++ G + +C G + W L +
Sbjct: 157 GVPTLKVQVPNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSA 201
>2fbo_J V1V2;, variable region-containing chitin-binding protein 3;
immunoglobulin, VCBP, V-type, V SET, immune system;
1.85A {Branchiostoma floridae}
Length = 250
Score = 79.6 bits (195), Expect = 7e-18
Identities = 19/177 (10%), Positives = 33/177 (18%), Gaps = 50/177 (28%)
Query: 67 SGTLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFT 126
+ TL + +D G+Y C V +
Sbjct: 89 APTLRLTHVHPQDGGRYWCQVAQWSIRTEFGLD--------------------AKSVVLK 128
Query: 127 CKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNEPVF--- 183
V +D G TC ++W ++ +
Sbjct: 129 VTGHTPSNNVHVSTAEVVQVDEGNDITMTCPCTDCANANVTWYTGPTFFENYETGTYQPL 188
Query: 184 ---------------------------RIDSVRKEDKGMYQCVIRNEQESAQASGEL 213
I + + D G C + Q A
Sbjct: 189 ANKNQFGITWFSSEIAGRASFSGARNLVIRAAKITDAGRVWCELATGQGELDADRSS 245
Score = 67.6 bits (164), Expect = 2e-13
Identities = 31/188 (16%), Positives = 53/188 (28%), Gaps = 24/188 (12%)
Query: 98 TVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAA-------GVEPTVQTIDFGR 150
+++TV T + G + C Y+++ G P T F
Sbjct: 1 SIMTVRTT------HTEVEVHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKG 54
Query: 151 PAQFTCKYEGNPVKTISWMKDGK-----PVPDHNEPVFRIDSVRKEDKGMYQCVIRNEQE 205
+ + G G V + P R+ V +D G Y C +
Sbjct: 55 NYNWQGEGLGFVESDSYKESFGDFLGRASVANLAAPTLRLTHVHPQDGGRYWCQVAQWSI 114
Query: 206 S-----AQASGELKLGGRFDP-PVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDG 259
S LK+ G V + ++ G + C + ++WY
Sbjct: 115 RTEFGLDAKSVVLKVTGHTPSNNVHVSTAEVVQVDEGNDITMTCPCTDCANANVTWYTGP 174
Query: 260 KKLVNAER 267
N E
Sbjct: 175 TFFENYET 182
Score = 45.3 bits (106), Expect = 8e-06
Identities = 9/36 (25%), Positives = 18/36 (50%)
Query: 67 SGTLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTV 102
+ L+I+ AK+ D+G+ C + G + T+
Sbjct: 212 ARNLVIRAAKITDAGRVWCELATGQGELDADRSSTI 247
>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor,
CD32, immunoglobulin superfamily, low responder
polymorphism, cell membrane; HET: NAG; 1.50A {Homo
sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C*
2fcb_A
Length = 170
Score = 77.6 bits (191), Expect = 9e-18
Identities = 23/126 (18%), Positives = 42/126 (33%), Gaps = 9/126 (7%)
Query: 139 VEPTVQTIDFGRPAQFTCKYEGNP-VKTISWMKDGKPVPDHNEPVFRIDSVRKEDKGMYQ 197
+EP + TC+ +P +I W +G +P H +P D G Y
Sbjct: 9 LEPPWINVLQEDSVTLTCQGARSPESDSIQWFHNGNLIPTHTQP-SYRFKANNNDSGEYT 67
Query: 198 CVIRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTP-EISWY 256
C S L F+ V+ G +C + + +++++
Sbjct: 68 CQTGQTSLSDPVH----LTVLFEWLVL--QTPHLEFQEGETIMLRCHSWKDKPLVKVTFF 121
Query: 257 LDGKKL 262
+GK
Sbjct: 122 QNGKSQ 127
Score = 71.8 bits (176), Expect = 1e-15
Identities = 32/183 (17%), Positives = 51/183 (27%), Gaps = 52/183 (28%)
Query: 30 GESFALLCEAQEN------MWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKY 83
+S L C+ + WF G+ + + +A DSG+Y
Sbjct: 19 EDSVTLTCQGARSPESDSIQWFH--NGNL----------IPTHTQPSYRFKANNNDSGEY 66
Query: 84 LCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTV 143
C + + V LTV E V + P E
Sbjct: 67 TCQTGQTSLSDPVH--LTVL------FEWLV----------------LQTPHLEFQE--- 99
Query: 144 QTIDFGRPAQFTCKYEGN-PVKTISWMKDGKPV-PDHNEPVFRIDSVRKEDKGMYQCVIR 201
G C + P+ +++ ++GK H +P F I G Y C
Sbjct: 100 -----GETIMLRCHSWKDKPLVKVTFFQNGKSQKFSHLDPTFSIPQANHSHSGDYHCTGN 154
Query: 202 NEQ 204
Sbjct: 155 IGY 157
Score = 43.3 bits (102), Expect = 2e-05
Identities = 20/80 (25%), Positives = 31/80 (38%), Gaps = 17/80 (21%)
Query: 30 GESFALLCEAQEN------MWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKY 83
GE+ L C + ++ +F+ G S+K + T I +A SG Y
Sbjct: 100 GETIMLRCHSWKDKPLVKVTFFQ--NGKSQKFSHL--------DPTFSIPQANHSHSGDY 149
Query: 84 LCVVNNSVGGESVETV-LTV 102
C N S + V +TV
Sbjct: 150 HCTGNIGYTLFSSKPVTITV 169
Score = 32.1 bits (73), Expect = 0.11
Identities = 7/42 (16%), Positives = 16/42 (38%), Gaps = 1/42 (2%)
Query: 222 PVIKESFSDETLNPGPNYYFKCIASGNPTPE-ISWYLDGKKL 262
V+K + + C + +P + I W+ +G +
Sbjct: 5 AVLKLEPPWINVLQEDSVTLTCQGARSPESDSIQWFHNGNLI 46
>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 100
Score = 75.1 bits (185), Expect = 1e-17
Identities = 23/80 (28%), Positives = 33/80 (41%), Gaps = 7/80 (8%)
Query: 141 PTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNEPV-------FRIDSVRKEDK 193
P QT+ A CK G+P+ ISW+K+G P + +I ++R D
Sbjct: 15 PANQTLAVDGTALLKCKATGDPLPVISWLKEGFTFPGRDPRATIQEQGTLQIKNLRISDT 74
Query: 194 GMYQCVIRNEQESAQASGEL 213
G Y CV + S L
Sbjct: 75 GTYTCVATSSSGETSWSAVL 94
Score = 53.9 bits (130), Expect = 8e-10
Identities = 15/47 (31%), Positives = 24/47 (51%)
Query: 221 PPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNAER 267
PP+I + +++TL KC A+G+P P ISW +G +
Sbjct: 8 PPIILQGPANQTLAVDGTALLKCKATGDPLPVISWLKEGFTFPGRDP 54
Score = 52.4 bits (126), Expect = 3e-09
Identities = 26/82 (31%), Positives = 34/82 (41%), Gaps = 13/82 (15%)
Query: 30 GESFALLCEAQEN-----MWFKFIEGSSRKVAVPLNDRVKQV--SGTLIIKEAKVEDSGK 82
+ L C+A + W K EG P D + GTL IK ++ D+G
Sbjct: 23 DGTALLKCKATGDPLPVISWLK--EG----FTFPGRDPRATIQEQGTLQIKNLRISDTGT 76
Query: 83 YLCVVNNSVGGESVETVLTVTA 104
Y CV +S G S VL VT
Sbjct: 77 YTCVATSSSGETSWSAVLDVTE 98
>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin
superfamily, integrin-binding, cell adhesion protein;
1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A
1vsc_A
Length = 202
Score = 77.5 bits (190), Expect = 2e-17
Identities = 25/149 (16%), Positives = 40/149 (26%), Gaps = 19/149 (12%)
Query: 128 KYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKD------GKPVPDHNEP 181
K E +P + G TC G SW GK +
Sbjct: 2 KIETTPESRYLAQI-------GDSVSLTCSTTGCESPFFSWRTQIDSPLNGKVTNEGTTS 54
Query: 182 VFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYF 241
++ V ++ Y C E + ++++ P I S L G
Sbjct: 55 TLTMNPVSFGNEHSYLCTATCESRKLEKGIQVEIYSFPKDPEIHLS---GPLEAGKPITV 111
Query: 242 KCIASGN---PTPEISWYLDGKKLVNAER 267
KC + EI + + E
Sbjct: 112 KCSVADVYPFDRLEIDLLKGDHLMKSQEF 140
Score = 69.8 bits (170), Expect = 1e-14
Identities = 25/226 (11%), Positives = 52/226 (23%), Gaps = 60/226 (26%)
Query: 30 GESFALLCEAQEN-----MWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYL 84
G+S +L C W I+ + + TL + + YL
Sbjct: 16 GDSVSLTCSTTGCESPFFSWRTQIDSPLNGK-----VTNEGTTSTLTMNPVSFGNEHSYL 70
Query: 85 CVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQ 144
C + + + ++ G+P C A V P
Sbjct: 71 CTATCESRKLEKGIQVEIYSFPKDPEIHLSGPLEAGKPITVKCS-------VADVYPF-- 121
Query: 145 TIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNEP-------------VFRIDSVRKE 191
I +K + V ++
Sbjct: 122 -----------------DRLEIDLLKGDHLMKSQEFLEDADRKSLETKSLEVTFTPVIED 164
Query: 192 DKGMYQCVIRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGP 237
+ C +A +L + P ++++ + + P
Sbjct: 165 IGKVLVC---------RA--KLHIDEMDSVPTVRQAVKELQVYISP 199
>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in
U twenty twenty, neurogenesis, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 75.2 bits (185), Expect = 2e-17
Identities = 26/106 (24%), Positives = 38/106 (35%), Gaps = 8/106 (7%)
Query: 139 VEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNEPVF-------RIDSVRKE 191
P QT+ +C G+PV TI W KDG V + + +I +
Sbjct: 13 QGPVNQTVAVDGTFVLSCVATGSPVPTILWRKDGVLVSTQDSRIKQLENGVLQIRYAKLG 72
Query: 192 DKGMYQCVIRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGP 237
D G Y C+ A S +++ PV +D L P
Sbjct: 73 DTGRYTCIASTPSGEATWSAYIEVQEF-GVPVQPPRPTDPNLIPSA 117
Score = 51.3 bits (123), Expect = 1e-08
Identities = 21/82 (25%), Positives = 38/82 (46%), Gaps = 11/82 (13%)
Query: 30 GESFALLCEAQEN-----MWFKFIEGSSRKVAVPLNDRVKQV-SGTLIIKEAKVEDSGKY 83
+F L C A + +W K +G + + R+KQ+ +G L I+ AK+ D+G+Y
Sbjct: 23 DGTFVLSCVATGSPVPTILWRK--DG---VLVSTQDSRIKQLENGVLQIRYAKLGDTGRY 77
Query: 84 LCVVNNSVGGESVETVLTVTAP 105
C+ + G + + V
Sbjct: 78 TCIASTPSGEATWSAYIEVQEF 99
Score = 49.4 bits (118), Expect = 4e-08
Identities = 14/47 (29%), Positives = 25/47 (53%)
Query: 221 PPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNAER 267
PPVI++ ++T+ + C+A+G+P P I W DG + +
Sbjct: 8 PPVIRQGPVNQTVAVDGTFVLSCVATGSPVPTILWRKDGVLVSTQDS 54
>3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex,
costimulation, glycoprotein, immunoglo domain, membrane,
transmembrane, receptor; 1.60A {Mus musculus} PDB:
3bp5_B 3rnq_B 3bov_A 3rnk_B
Length = 202
Score = 77.4 bits (190), Expect = 2e-17
Identities = 20/147 (13%), Positives = 40/147 (27%), Gaps = 22/147 (14%)
Query: 139 VEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNEPVF--------------- 183
V T+D G C ++ + ++ +++ +
Sbjct: 7 APKEVYTVDVGSSVSLECDFDRRECTELEGIRASLQKVENDTSLQSERATLLEEQLPLGK 66
Query: 184 ---RIDSVRKEDKGMYQCVIRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYY 240
I SV+ D G Y+C++ +K+ + +
Sbjct: 67 ALFHIPSVQVRDSGQYRCLVICGAAWDYKYLTVKVKASYMRIDTRILEVPG----TGEVQ 122
Query: 241 FKCIASGNPTPEISWYLDGKKLVNAER 267
C A G P E+SW +
Sbjct: 123 LTCQARGYPLAEVSWQNVSVPANTSHI 149
Score = 72.0 bits (176), Expect = 2e-15
Identities = 32/213 (15%), Positives = 61/213 (28%), Gaps = 49/213 (23%)
Query: 30 GESFALLC-----EAQENMWFKFIEGSSRKVAVPLNDRVKQVS-------GTLIIKEAKV 77
G S +L C E E + ++R + I +V
Sbjct: 17 GSSVSLECDFDRRECTELEGIRASLQKVENDTSLQSERATLLEEQLPLGKALFHIPSVQV 76
Query: 78 EDSGKYLCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAA 137
DSG+Y C+V + + V
Sbjct: 77 RDSGQYRCLVICGAAWDYKYLTVKV------------------------------KASYM 106
Query: 138 GVEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHN----EPVFRIDS---VRK 190
++ + + Q TC+ G P+ +SW P + E ++++ S ++
Sbjct: 107 RIDTRILEVPGTGEVQLTCQARGYPLAEVSWQNVSVPANTSHIRTPEGLYQVTSVLRLKP 166
Query: 191 EDKGMYQCVIRNEQESAQASGELKLGGRFDPPV 223
+ + C+ N S + R +P V
Sbjct: 167 QPSRNFSCMFWNAHMKELTSAIIDPLSRMEPKV 199
Score = 42.3 bits (99), Expect = 5e-05
Identities = 21/117 (17%), Positives = 40/117 (34%), Gaps = 9/117 (7%)
Query: 2 VGSDLKPVGFKAPTFSSVSDIIRFKKPGGESFALLCEAQ-----ENMWFKFIEGSSRKVA 56
D K + K D + PG L C+A+ E W + +
Sbjct: 90 AAWDYKYLTVKVKASYMRIDTRILEVPGTGEVQLTCQARGYPLAEVSWQN-VSVPANTSH 148
Query: 57 VPLNDRVKQVSGTLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTVTAPLAAGVEPT 113
+ + + QV+ L +K + S + C+ N+ E ++ + + V T
Sbjct: 149 IRTPEGLYQVTSVLRLKP---QPSRNFSCMFWNAHMKELTSAIIDPLSRMEPKVPRT 202
>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin,
actin-associated scaffold, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 110
Score = 73.2 bits (180), Expect = 8e-17
Identities = 26/94 (27%), Positives = 35/94 (37%), Gaps = 10/94 (10%)
Query: 139 VEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPD-------HNEP---VFRIDSV 188
P T+ G+ + CK G P +SW DGKPV E I+ V
Sbjct: 14 QAPGDLTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPVRPDSAHKMLVRENGVHSLIIEPV 73
Query: 189 RKEDKGMYQCVIRNEQESAQASGELKLGGRFDPP 222
D G+Y C+ N S EL + + P
Sbjct: 74 TSRDAGIYTCIATNRAGQNSFSLELVVAAKESGP 107
Score = 52.8 bits (127), Expect = 3e-09
Identities = 16/47 (34%), Positives = 22/47 (46%)
Query: 221 PPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNAER 267
P ++ D T+ G C SG PTP++SW LDGK +
Sbjct: 9 RPHFLQAPGDLTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPVRPDSA 55
Score = 43.5 bits (103), Expect = 5e-06
Identities = 23/103 (22%), Positives = 35/103 (33%), Gaps = 18/103 (17%)
Query: 13 APTFSSV-SDIIRFKKPGGESFALLCEAQ-----ENMWFKF----IEGSSRKVAVPLNDR 62
P F D+ + G+ + C+ + W S+ K+ V N
Sbjct: 9 RPHFLQAPGDLTVQE---GKLCRMDCKVSGLPTPDLSWQLDGKPVRPDSAHKMLVRENGV 65
Query: 63 VKQVSGTLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTVTAP 105
+LII+ D+G Y C+ N G S L V A
Sbjct: 66 -----HSLIIEPVTSRDAGIYTCIATNRAGQNSFSLELVVAAK 103
>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain,
immunoglobulin fold, alternative splicing, signal,
muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB:
1ncu_A 1tnm_A 1tnn_A
Length = 106
Score = 72.8 bits (179), Expect = 1e-16
Identities = 23/85 (27%), Positives = 40/85 (47%), Gaps = 9/85 (10%)
Query: 139 VEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVP---------DHNEPVFRIDSVR 189
+P T+ G A+F+C +G PV T++W++ G+ + + F I SV+
Sbjct: 19 TKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEISSVQ 78
Query: 190 KEDKGMYQCVIRNEQESAQASGELK 214
D+G Y V+ N + +A L
Sbjct: 79 ASDEGNYSVVVENSEGKQEAEFTLT 103
Score = 49.7 bits (119), Expect = 3e-08
Identities = 12/47 (25%), Positives = 18/47 (38%)
Query: 221 PPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNAER 267
I T+ G + F C G P P ++W G+ L + R
Sbjct: 14 AARILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSAR 60
Score = 44.7 bits (106), Expect = 2e-06
Identities = 20/81 (24%), Positives = 27/81 (33%), Gaps = 13/81 (16%)
Query: 30 GESFALLCEAQEN-----MWFKF---IEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSG 81
GES C+ W + + S+R T I + D G
Sbjct: 29 GESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKY-----KSTFEISSVQASDEG 83
Query: 82 KYLCVVNNSVGGESVETVLTV 102
Y VV NS G + E LT+
Sbjct: 84 NYSVVVENSEGKQEAEFTLTI 104
>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase,
heparin-binding, nucleotide-binding, immunoglobulin
domain, alternatice splicing; NMR {Mus musculus}
Length = 95
Score = 72.1 bits (177), Expect = 2e-16
Identities = 18/91 (19%), Positives = 32/91 (35%), Gaps = 6/91 (6%)
Query: 128 KYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHN-----EPV 182
E + P VE + G Q C+ + +I+W++DG + + N
Sbjct: 3 LPEQAQPWGVPVEVESLLVHPGDLLQLRCRLRDDVQ-SINWLRDGVQLVESNRTRITGEE 61
Query: 183 FRIDSVRKEDKGMYQCVIRNEQESAQASGEL 213
+ D G+Y CV + S +
Sbjct: 62 VEVRDSIPADSGLYACVTSSPSGSDTTYFSV 92
Score = 61.4 bits (149), Expect = 1e-12
Identities = 14/78 (17%), Positives = 35/78 (44%), Gaps = 10/78 (12%)
Query: 30 GESFALLCEAQENM----WFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYLC 85
G+ L C ++++ W + V + ++R + + ++++ DSG Y C
Sbjct: 24 GDLLQLRCRLRDDVQSINWLR------DGVQLVESNRTRITGEEVEVRDSIPADSGLYAC 77
Query: 86 VVNNSVGGESVETVLTVT 103
V ++ G ++ + V+
Sbjct: 78 VTSSPSGSDTTYFSVNVS 95
Score = 44.4 bits (105), Expect = 2e-06
Identities = 11/47 (23%), Positives = 18/47 (38%), Gaps = 1/47 (2%)
Query: 221 PPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNAER 267
P + ++PG +C I+W DG +LV + R
Sbjct: 9 PWGVPVEVESLLVHPGDLLQLRCRLRD-DVQSINWLRDGVQLVESNR 54
>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit;
immunoglobulin fold, glycoprotein, IGE-binding Pro
immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP:
b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A*
1j88_A* 1j89_A* 1j87_A*
Length = 176
Score = 74.2 bits (182), Expect = 2e-16
Identities = 28/126 (22%), Positives = 46/126 (36%), Gaps = 9/126 (7%)
Query: 139 VEPTVQTIDFGRPAQFTCKYEGNP-VKTISWMKDGKPVPDHNEPVFRIDSVRKEDKGMYQ 197
+ P I G TC V + W +G + N I + + ED G Y+
Sbjct: 9 LNPPWNRIFKGENVTLTCNGNNFFEVSSTKWFHNGSLSEETNS-SLNIVNAKFEDSGEYK 67
Query: 198 CVIRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGN-PTPEISWY 256
C + ES + L D ++ S E + G + +C N ++ +Y
Sbjct: 68 CQHQQVNESE----PVYLEVFSDWLLL--QASAEVVMEGQPLFLRCHGWRNWDVYKVIYY 121
Query: 257 LDGKKL 262
DG+ L
Sbjct: 122 KDGEAL 127
Score = 70.3 bits (172), Expect = 4e-15
Identities = 39/194 (20%), Positives = 59/194 (30%), Gaps = 53/194 (27%)
Query: 30 GESFALLCEAQEN------MWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKY 83
GE+ L C WF GS ++ + +L I AK EDSG+Y
Sbjct: 19 GENVTLTCNGNNFFEVSSTKWFH--NGS----------LSEETNSSLNIVNAKFEDSGEY 66
Query: 84 LCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTV 143
C E V + L ++ +
Sbjct: 67 KCQHQQVNESEPVYLEVFSDWLL--------------------------------LQASA 94
Query: 144 QTIDFGRPAQFTCKYEGN-PVKTISWMKDGKPVPDHNE-PVFRIDSVRKEDKGMYQCVIR 201
+ + G+P C N V + + KDG+ + E I + ED G Y C +
Sbjct: 95 EVVMEGQPLFLRCHGWRNWDVYKVIYYKDGEALKYWYENHNISITNATVEDSGTYYCTGK 154
Query: 202 NEQESAQASGELKL 215
Q S L +
Sbjct: 155 VWQ-LDYESEPLNI 167
Score = 45.3 bits (107), Expect = 3e-06
Identities = 19/83 (22%), Positives = 29/83 (34%), Gaps = 17/83 (20%)
Query: 30 GESFALLCEAQEN------MWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKY 83
G+ L C N +++K +G + K + + I A VEDSG Y
Sbjct: 100 GQPLFLRCHGWRNWDVYKVIYYK--DGEALKYWYE--------NHNISITNATVEDSGTY 149
Query: 84 LCVVNNSVGGESVETV-LTVTAP 105
C E + +TV
Sbjct: 150 YCTGKVWQLDYESEPLNITVIKA 172
Score = 33.3 bits (76), Expect = 0.042
Identities = 6/42 (14%), Positives = 12/42 (28%), Gaps = 1/42 (2%)
Query: 222 PVIKESFSDETLNPGPNYYFKCIASGNPTPE-ISWYLDGKKL 262
P + + + G N C + W+ +G
Sbjct: 5 PKVSLNPPWNRIFKGENVTLTCNGNNFFEVSSTKWFHNGSLS 46
>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage
capsid decorative protein, interaction with bacteria;
1.95A {Enterobacteria phage RB49}
Length = 304
Score = 76.4 bits (187), Expect = 2e-16
Identities = 35/207 (16%), Positives = 64/207 (30%), Gaps = 37/207 (17%)
Query: 67 SGTLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTVT---APLAAGVEPTVQTIDFGRPA 123
+ TL + +A E++G Y V ++ SVE+ + + + EP +
Sbjct: 51 TATLTVADATSENAGSYKVTVQDTDTMTSVESEVFLMEEAELIVNITEPQHFYVSSQTDV 110
Query: 124 QFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNEPVF 183
+ + + G P N SW K +
Sbjct: 111 ELHA----TVKFSGGKTPA-----------------DNYELHYSWSKGEDVIDTT--QDI 147
Query: 184 RIDSVRKEDKGMYQCVIRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKC 243
I + G+Y + E E + AS K+ V ++ +T+ G
Sbjct: 148 TIQEFTADKNGVYTVKVWGESEDSAASASTKIMLA-TMNVDQDVVESKTVALGNEISLNY 206
Query: 244 IASG----------NPTPEISWYLDGK 260
+ S N T + +WYL +
Sbjct: 207 VVSEDIVGDSSGMPNLTIKYNWYLQRE 233
Score = 66.4 bits (161), Expect = 6e-13
Identities = 17/133 (12%), Positives = 38/133 (28%), Gaps = 13/133 (9%)
Query: 139 VEPTVQTIDFGRPAQFTCKYEGNPVK----TISWMKDGKPVPDHNEPVFRIDSVRKEDKG 194
++ + G T G+ T +W KD +P ++ + E+ G
Sbjct: 7 IQSNKRCFLAGDGFTLTATVAGDEPLPSNLTYTWTKDDQPHENNTA-TLTVADATSENAG 65
Query: 195 MYQCVIRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKC---IASGNPTP 251
Y+ +++ E+ L + V ++ + + G
Sbjct: 66 SYKVTVQDTDTMTSVESEVFLMEEAELIVNITEPQHFYVSSQTDVELHATVKFSGGKTPA 125
Query: 252 EI-----SWYLDG 259
+ SW
Sbjct: 126 DNYELHYSWSKGE 138
Score = 64.8 bits (157), Expect = 2e-12
Identities = 22/159 (13%), Positives = 51/159 (32%), Gaps = 10/159 (6%)
Query: 60 NDRVKQVSGTLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTVTAPLAAGVEPTVQ--TI 117
+ V + + I+E + +G Y V + + + V+ T+
Sbjct: 137 GEDVIDTTQDITIQEFTADKNGVYTVKVWGESEDSAASASTKIMLATMNVDQDVVESKTV 196
Query: 118 DFGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPD 177
G + P + TI + + + EG T+ + G+ +
Sbjct: 197 ALGNEISLNYVVSEDIVGDSSGMPNL-TIKY----NWYLQREGQLSPTLIGSEVGEALEG 251
Query: 178 HN---EPVFRIDSVRKEDKGMYQCVIRNEQESAQASGEL 213
+ + +S +D + CV + Q+ + E+
Sbjct: 252 FSITPDGHLFKESATYDDTAKFWCVAKLYQQIEDETVEV 290
Score = 34.4 bits (78), Expect = 0.024
Identities = 14/74 (18%), Positives = 23/74 (31%), Gaps = 6/74 (8%)
Query: 44 WFKFIEGS------SRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYLCVVNNSVGGESVE 97
W+ EG +V L G L + A +D+ K+ CV E
Sbjct: 228 WYLQREGQLSPTLIGSEVGEALEGFSITPDGHLFKESATYDDTAKFWCVAKLYQQIEDET 287
Query: 98 TVLTVTAPLAAGVE 111
+ + +E
Sbjct: 288 VEVAASTSRKCSME 301
Score = 30.6 bits (68), Expect = 0.48
Identities = 7/49 (14%), Positives = 14/49 (28%), Gaps = 4/49 (8%)
Query: 221 PPVIKESFSDETLNPGPNYYFKCIASGN-PTPE---ISWYLDGKKLVNA 265
+ + G + +G+ P P +W D + N
Sbjct: 2 AFTVSIQSNKRCFLAGDGFTLTATVAGDEPLPSNLTYTWTKDDQPHENN 50
>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin,
beta-sandwich, mceacam1A - immunoglobulin FO spike NTD -
galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus
musculus} PDB: 1l6z_A*
Length = 208
Score = 74.7 bits (183), Expect = 2e-16
Identities = 31/156 (19%), Positives = 56/156 (35%), Gaps = 36/156 (23%)
Query: 67 SGTLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFT 126
+G+L+ + ++D G Y + + + TV +F
Sbjct: 70 NGSLLFQMITMKDMGVYTLDMTDENYRRTQATV------------------------RFH 105
Query: 127 CKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPD-------HN 179
++ P ++ T T+ TC I W+ + + + N
Sbjct: 106 VHQPVTQP---FLQVTNTTVKELDSVTLTCLSNDIGA-NIQWLFNSQSLQLTERMTLSQN 161
Query: 180 EPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKL 215
+ RID +++ED G YQC I N S + S +KL
Sbjct: 162 NSILRIDPIKREDAGEYQCEISNP-VSVRRSNSIKL 196
Score = 62.4 bits (151), Expect = 6e-12
Identities = 16/154 (10%), Positives = 38/154 (24%), Gaps = 27/154 (17%)
Query: 139 VEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPD--------------------H 178
+E + + +W K D
Sbjct: 4 IEAVPPQVAEDNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSG 63
Query: 179 NEPVF-----RIDSVRKEDKGMYQCVIRNEQESAQASGELKLGGRFDPPVIKESFSDETL 233
E ++ + +D G+Y + +E ++ ++ T+
Sbjct: 64 REIIYSNGSLLFQMITMKDMGVYTLDMTDENYRRT-QATVRFHVHQPVTQPFLQVTNTTV 122
Query: 234 NPGPNYYFKCIASGNPTPEISWYLDGKKLVNAER 267
+ C++ + I W + + L ER
Sbjct: 123 KELDSVTLTCLS-NDIGANIQWLFNSQSLQLTER 155
Score = 47.7 bits (113), Expect = 8e-07
Identities = 17/83 (20%), Positives = 31/83 (37%), Gaps = 13/83 (15%)
Query: 30 GESFALLCEAQEN----MWFKFIEGSSRKVAVPLNDRVKQVS--GTLIIKEAKVEDSGKY 83
+S L C + + W ++ L +R+ L I K ED+G+Y
Sbjct: 125 LDSVTLTCLSNDIGANIQWLF------NSQSLQLTERMTLSQNNSILRIDPIKREDAGEY 178
Query: 84 LCVVNNSVGGESVETV-LTVTAP 105
C ++N V ++ L +
Sbjct: 179 QCEISNPVSVRRSNSIKLDIIFD 201
>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein,
cell membrane, cytoplasm, cytoskeleton, disease
mutation, immunoglobulin domain; NMR {Homo sapiens}
Length = 100
Score = 71.2 bits (175), Expect = 3e-16
Identities = 22/85 (25%), Positives = 32/85 (37%), Gaps = 10/85 (11%)
Query: 140 EPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVP----------DHNEPVFRIDSVR 189
P +ID GR + K G P +SW +G+ V + + VR
Sbjct: 11 VPENMSIDEGRFCRMDFKVSGLPAPDVSWYLNGRTVQSDDLHKMIVSEKGLHSLIFEVVR 70
Query: 190 KEDKGMYQCVIRNEQESAQASGELK 214
D G Y CV +N A + +L
Sbjct: 71 ASDAGAYACVAKNRAGEATFTVQLD 95
Score = 50.0 bits (120), Expect = 2e-08
Identities = 12/47 (25%), Positives = 24/47 (51%)
Query: 221 PPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNAER 267
PP + + +++ G SG P P++SWYL+G+ + + +
Sbjct: 5 PPRFIQVPENMSIDEGRFCRMDFKVSGLPAPDVSWYLNGRTVQSDDL 51
Score = 41.9 bits (99), Expect = 1e-05
Identities = 16/84 (19%), Positives = 26/84 (30%), Gaps = 14/84 (16%)
Query: 30 GESFALLCEAQ-----ENMWFK----FIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDS 80
G + + + W+ K+ V +LI + + D+
Sbjct: 20 GRFCRMDFKVSGLPAPDVSWYLNGRTVQSDDLHKMIVSEKGLH-----SLIFEVVRASDA 74
Query: 81 GKYLCVVNNSVGGESVETVLTVTA 104
G Y CV N G + L V A
Sbjct: 75 GAYACVAKNRAGEATFTVQLDVLA 98
>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein;
2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A
Length = 154
Score = 72.2 bits (177), Expect = 5e-16
Identities = 32/150 (21%), Positives = 44/150 (29%), Gaps = 33/150 (22%)
Query: 75 AKVEDSGKYLCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPP 134
+ + SG N+ E+ + L A V+P FT
Sbjct: 5 SGRKASGSSPTSPINANKVENEDAFLEEVAEEKPHVKP-----------YFT-------- 45
Query: 135 LAAGVEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVP----------DHNEPVFR 184
+ G A+F CK EG P + W KD PV +
Sbjct: 46 ----KTILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLT 101
Query: 185 IDSVRKEDKGMYQCVIRNEQESAQASGELK 214
I V +D Y C N A + EL
Sbjct: 102 ISEVCGDDDAKYTCKAVNSLGEATCTAELL 131
Score = 50.6 bits (121), Expect = 3e-08
Identities = 15/82 (18%), Positives = 27/82 (32%), Gaps = 1/82 (1%)
Query: 187 SVRKEDKGMYQCVIRNEQESAQASGELKLGGRFD-PPVIKESFSDETLNPGPNYYFKCIA 245
+ + N+ E+ A E + P ++ D + G F C
Sbjct: 6 GRKASGSSPTSPINANKVENEDAFLEEVAEEKPHVKPYFTKTILDMEVVEGSAARFDCKV 65
Query: 246 SGNPTPEISWYLDGKKLVNAER 267
G P PE+ W+ D + +
Sbjct: 66 EGYPDPEVMWFKDDNPVKESRH 87
Score = 42.1 bits (99), Expect = 3e-05
Identities = 14/50 (28%), Positives = 18/50 (36%)
Query: 69 TLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTID 118
+L I E +D KY C NS+G + L V G D
Sbjct: 99 SLTISEVCGDDDAKYTCKAVNSLGEATCTAELLVETMGKEGEGEGEGEED 148
>3irg_A Titin; IG-like, titin, OBSL1, complex, alternative splicing,
ATP-binding, calcium, calmodulin-binding,
cardiomyopathy; 1.30A {Homo sapiens} PDB: 3knb_A 3q5o_A
2wp3_T* 2wwk_T 2wwm_D 2y9r_T*
Length = 100
Score = 70.4 bits (173), Expect = 6e-16
Identities = 20/85 (23%), Positives = 35/85 (41%), Gaps = 11/85 (12%)
Query: 141 PTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNEPVFR-----------IDSVR 189
P+ +ID G+ C + G P ++W G+ + + F I V+
Sbjct: 12 PSDISIDEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQGRFHIENTDDLTTLIIMDVQ 71
Query: 190 KEDKGMYQCVIRNEQESAQASGELK 214
K+D G+Y + NE S A+ +
Sbjct: 72 KQDGGLYTLSLGNEFGSDSATVNIH 96
Score = 52.7 bits (127), Expect = 2e-09
Identities = 16/47 (34%), Positives = 27/47 (57%)
Query: 221 PPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNAER 267
PP I+ SD +++ G C +G PTPE++W G+K+ + E+
Sbjct: 5 PPKIEALPSDISIDEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQ 51
Score = 48.8 bits (117), Expect = 6e-08
Identities = 15/84 (17%), Positives = 28/84 (33%), Gaps = 13/84 (15%)
Query: 30 GESFALLCEAQ-----ENMWFK----FIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDS 80
G+ + C E W + + D + TLII + + +D
Sbjct: 20 GKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQGRFHIENTDDL----TTLIIMDVQKQDG 75
Query: 81 GKYLCVVNNSVGGESVETVLTVTA 104
G Y + N G +S + + +
Sbjct: 76 GLYTLSLGNEFGSDSATVNIHIRS 99
>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin
domain, fibronectin type III repeat, CE adhesion; 1.80A
{Homo sapiens}
Length = 215
Score = 73.3 bits (180), Expect = 7e-16
Identities = 21/99 (21%), Positives = 28/99 (28%), Gaps = 11/99 (11%)
Query: 140 EPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNEP-----------VFRIDSV 188
P G TC+ P TISW +DG+ +P N +
Sbjct: 24 GPVAVYTWEGNQVNITCEVFAYPSATISWFRDGQLLPSSNYSNIKIYNTPSASYLEVTPD 83
Query: 189 RKEDKGMYQCVIRNEQESAQASGELKLGGRFDPPVIKES 227
+ D G Y C N L P I +
Sbjct: 84 SENDFGNYNCTAVNRIGQESLEFILVQADTPSSPSIDQV 122
Score = 44.8 bits (106), Expect = 6e-06
Identities = 25/121 (20%), Positives = 39/121 (32%), Gaps = 26/121 (21%)
Query: 13 APTFSSVSDIIRFKKPGGESFALLCEAQEN-----MWFKF---IEGSSRKVAVPLNDRVK 64
AP + ++ G + CE WF+ + S+ +K
Sbjct: 19 APKLQGPVAVYTWE---GNQVNITCEVFAYPSATISWFRDGQLLPSSNYS-------NIK 68
Query: 65 QVSG----TLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTVT----APLAAGVEPTVQT 116
+ L + D G Y C N +G ES+E +L +P VEP T
Sbjct: 69 IYNTPSASYLEVTPDSENDFGNYNCTAVNRIGQESLEFILVQADTPSSPSIDQVEPYSST 128
Query: 117 I 117
Sbjct: 129 A 129
Score = 39.0 bits (91), Expect = 6e-04
Identities = 10/42 (23%), Positives = 15/42 (35%), Gaps = 1/42 (2%)
Query: 221 PPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKL 262
P ++ G C P+ ISW+ DG+ L
Sbjct: 19 APKLQGP-VAVYTWEGNQVNITCEVFAYPSATISWFRDGQLL 59
>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain,
cell adhesion, cell junction, glycoprotein,
immunoglobulin domain, membrane; HET: NAG FUC; 2.19A
{Mus musculus} PDB: 3mj7_A* 3mj9_A*
Length = 268
Score = 74.1 bits (181), Expect = 8e-16
Identities = 24/175 (13%), Positives = 57/175 (32%), Gaps = 30/175 (17%)
Query: 57 VPLNDRVKQVSGTLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTVTAPLAAGVEPTVQT 116
L G+L++++ + D G Y C + ++ + + EP
Sbjct: 73 SHLVGDTFHNDGSLLLQDVQKADEGIYTCEIRLKNESMVMKKPVELWVLPE---EPRDLR 129
Query: 117 IDFGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVP 176
+ G Q C + + V +++ F+ +S+ + +
Sbjct: 130 VRVGDTTQMRCSIQSTEE------KRVTKVNW----MFSSGSHTEEETVLSYDSNMRSGK 179
Query: 177 DHNEPVFR-----------------IDSVRKEDKGMYQCVIRNEQESAQASGELK 214
+ FR + +V++ D+G+Y C I + ++ + L
Sbjct: 180 FQSLGRFRNRVDLTGDISRNDGSIKLQTVKESDQGIYTCSIYVGKLESRKTIVLH 234
Score = 64.9 bits (157), Expect = 2e-12
Identities = 28/164 (17%), Positives = 44/164 (26%), Gaps = 41/164 (25%)
Query: 139 VEPTVQTIDFGRPAQFTCKY---EGNPVKTISWMK---------------DGKPVPD--- 177
V + G C E V + W+ VP
Sbjct: 10 VSSPQLRVHVGESVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYSNLSVPTGRF 69
Query: 178 -----------HNEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLGGRFDPPVIKE 226
HN+ + V+K D+G+Y C IR + ES ++L V+ E
Sbjct: 70 QNRSHLVGDTFHNDGSLLLQDVQKADEGIYTCEIRLKNESMVMKKPVEL------WVLPE 123
Query: 227 SFSDETLNPGPNYYFKCIASGNPTPE---ISWYLDGKKLVNAER 267
D + G +C ++W E
Sbjct: 124 EPRDLRVRVGDTTQMRCSIQSTEEKRVTKVNWMFSSGSHTEEET 167
Score = 49.9 bits (118), Expect = 2e-07
Identities = 18/94 (19%), Positives = 28/94 (29%), Gaps = 1/94 (1%)
Query: 24 RFKKPGGESFALLCEAQENMWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKY 83
E +L KF + V L + + G++ ++ K D G Y
Sbjct: 157 FSSGSHTEEETVLSYDSNMRSGKFQSLGRFRNRVDLTGDISRNDGSIKLQTVKESDQGIY 216
Query: 84 LCVVNNSVGGESVETVLTVT-APLAAGVEPTVQT 116
C + VL V + PT T
Sbjct: 217 TCSIYVGKLESRKTIVLHVVQDEFQRTISPTPPT 250
>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody,
immune system; HET: NAG BMA MAN FUC; 2.20A {Homo
sapiens} PDB: 3sgk_C*
Length = 204
Score = 72.6 bits (178), Expect = 9e-16
Identities = 34/210 (16%), Positives = 61/210 (29%), Gaps = 55/210 (26%)
Query: 30 GESFALLCEAQEN------MWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKY 83
+S L C+ + WF + + + I A V+DSG+Y
Sbjct: 22 KDSVTLKCQGAYSPEDQSTQWFH------------NESLISSQASSYFIDAATVDDSGEY 69
Query: 84 LCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTV 143
C S + V+ L V + + P E
Sbjct: 70 RCQTQLSTLSDPVQ--LEVHIG------WLL----------------LQAPRWVFKE--- 102
Query: 144 QTIDFGRPAQFTCKYEGN-PVKTISWMKDGKPVPD-HNEPVFRIDSVRKEDKGMYQCVIR 201
P C N + ++++++GK H+ F I +D G Y C
Sbjct: 103 -----EDPIHLRCHSWKNTALHKVTYLQNGKGRKYFHHNSDFYIPKATLKDSGSYFCRGL 157
Query: 202 NEQESAQASGELKL--GGRFDPPVIKESFS 229
++ +S +++ I F
Sbjct: 158 VGSKN-VSSETVQITITQGLAVSTISSFFP 186
Score = 69.1 bits (169), Expect = 2e-14
Identities = 17/126 (13%), Positives = 42/126 (33%), Gaps = 9/126 (7%)
Query: 139 VEPTVQTIDFGRPAQFTCKYEGNP-VKTISWMKDGKPVPDHNEPVFRIDSVRKEDKGMYQ 197
+EP + C+ +P ++ W + + + ID+ +D G Y+
Sbjct: 12 LEPQWYRVLEKDSVTLKCQGAYSPEDQSTQWFHNESLISSQASS-YFIDAATVDDSGEYR 70
Query: 198 CVIRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTP-EISWY 256
C + S ++L ++ + +C + N ++++
Sbjct: 71 CQTQLSTLSD----PVQLEVHIGWLLL--QAPRWVFKEEDPIHLRCHSWKNTALHKVTYL 124
Query: 257 LDGKKL 262
+GK
Sbjct: 125 QNGKGR 130
>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta
sandwich, immunoglobulin-like, immune system receptor;
1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A
1e4k_C* 1t83_C* 1t89_C* 3ay4_C*
Length = 175
Score = 71.8 bits (176), Expect = 1e-15
Identities = 16/127 (12%), Positives = 37/127 (29%), Gaps = 9/127 (7%)
Query: 139 VEPTVQTIDFGRPAQFTCKYEGNP-VKTISWMKDGKPVPDHNEPVFRIDSVRKEDKGMYQ 197
+EP ++ C+ +P + W + + + ID+ D G Y+
Sbjct: 12 LEPQWYSVLEKDSVTLKCQGAYSPEDNSTQWFHNESLISSQASS-YFIDAATVNDSGEYR 70
Query: 198 CVIRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIA-SGNPTPEISWY 256
C S L ++ + +C + ++++
Sbjct: 71 CQTNLSTLSDPVQ----LEVHIGWLLL--QAPRWVFKEEDPIHLRCHSWKNTALHKVTYL 124
Query: 257 LDGKKLV 263
+GK
Sbjct: 125 QNGKDRK 131
Score = 70.7 bits (173), Expect = 3e-15
Identities = 31/194 (15%), Positives = 57/194 (29%), Gaps = 53/194 (27%)
Query: 30 GESFALLCEAQEN------MWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKY 83
+S L C+ + WF + + + I A V DSG+Y
Sbjct: 22 KDSVTLKCQGAYSPEDNSTQWFH------------NESLISSQASSYFIDAATVNDSGEY 69
Query: 84 LCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTV 143
C N S + V+ L V L
Sbjct: 70 RCQTNLSTLSDPVQ--LEVHIG---------------------------WLLLQAPRWVF 100
Query: 144 QTIDFGRPAQFTCK-YEGNPVKTISWMKDGKPVP-DHNEPVFRIDSVRKEDKGMYQCVIR 201
+ P C ++ + ++++++GK H+ F I +D G Y C
Sbjct: 101 KE---EDPIHLRCHSWKNTALHKVTYLQNGKDRKYFHHNSDFHIPKATLKDSGSYFCRGL 157
Query: 202 NEQESAQASGELKL 215
++ +S + +
Sbjct: 158 VGSKN-VSSETVNI 170
>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 99
Score = 69.3 bits (170), Expect = 2e-15
Identities = 18/87 (20%), Positives = 33/87 (37%), Gaps = 7/87 (8%)
Query: 132 SPPLAAGVEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNEPVF-----RID 186
S ++GVE + G Q C+ + +I+W++DG + + N +
Sbjct: 2 SSG-SSGVEVESFLVHPGDLLQLRCRLRDDVQ-SINWLRDGVQLAESNRTRITGEEVEVQ 59
Query: 187 SVRKEDKGMYQCVIRNEQESAQASGEL 213
D G+Y CV + S +
Sbjct: 60 DSVPADSGLYACVTSSPSGSDTTYFSV 86
Score = 60.9 bits (148), Expect = 3e-12
Identities = 17/84 (20%), Positives = 39/84 (46%), Gaps = 10/84 (11%)
Query: 30 GESFALLCEAQEN----MWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYLC 85
G+ L C +++ W + +G V + ++R + + ++++ DSG Y C
Sbjct: 18 GDLLQLRCRLRDDVQSINWLR--DG----VQLAESNRTRITGEEVEVQDSVPADSGLYAC 71
Query: 86 VVNNSVGGESVETVLTVTAPLAAG 109
V ++ G ++ + V+ L +G
Sbjct: 72 VTSSPSGSDTTYFSVNVSDALPSG 95
Score = 40.8 bits (96), Expect = 4e-05
Identities = 9/48 (18%), Positives = 16/48 (33%), Gaps = 1/48 (2%)
Query: 220 DPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNAER 267
++PG +C + I+W DG +L + R
Sbjct: 2 SSGSSGVEVESFLVHPGDLLQLRCRLRDDV-QSINWLRDGVQLAESNR 48
>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2,
angiogenesis, ATP-binding, developmental protein,
differentiation, glycoprotein; 2.70A {Homo sapiens}
Length = 108
Score = 69.7 bits (171), Expect = 2e-15
Identities = 21/83 (25%), Positives = 30/83 (36%), Gaps = 7/83 (8%)
Query: 139 VEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPD-------HNEPVFRIDSVRKE 191
QT G + +C GNP I W KD + + + I VRKE
Sbjct: 15 GNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLKDGNRNLTIRRVRKE 74
Query: 192 DKGMYQCVIRNEQESAQASGELK 214
D+G+Y C + A+
Sbjct: 75 DEGLYTCQACSVLGCAKVEAFFI 97
Score = 53.1 bits (128), Expect = 2e-09
Identities = 21/83 (25%), Positives = 31/83 (37%), Gaps = 13/83 (15%)
Query: 30 GESFALLCEAQEN-----MWFKFIEGSSRKVAVPLNDRVKQVSG--TLIIKEAKVEDSGK 82
GES + C A N MWFK + + + + G L I+ + ED G
Sbjct: 25 GESIEVSCTASGNPPPQIMWFK--DNE----TLVEDSGIVLKDGNRNLTIRRVRKEDEGL 78
Query: 83 YLCVVNNSVGGESVETVLTVTAP 105
Y C + +G VE +
Sbjct: 79 YTCQACSVLGCAKVEAFFIIEGA 101
Score = 51.2 bits (123), Expect = 8e-09
Identities = 16/47 (34%), Positives = 24/47 (51%)
Query: 221 PPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNAER 267
P I + ++T + G + C ASGNP P+I W+ D + LV
Sbjct: 10 APTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSG 56
>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 99
Score = 68.9 bits (169), Expect = 2e-15
Identities = 17/82 (20%), Positives = 27/82 (32%), Gaps = 6/82 (7%)
Query: 139 VEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVP------DHNEPVFRIDSVRKED 192
+ G+ C G PV I+W+ +G+P+ + I ED
Sbjct: 16 SVLKDCAVIEGQDFVLQCSVRGTPVPRITWLLNGQPIQYARSTCEAGVAELHIQDALPED 75
Query: 193 KGMYQCVIRNEQESAQASGELK 214
G Y C+ N S +
Sbjct: 76 HGTYTCLAENALGQVSCSAWVT 97
Score = 45.4 bits (108), Expect = 8e-07
Identities = 11/42 (26%), Positives = 19/42 (45%)
Query: 221 PPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKL 262
P D + G ++ +C G P P I+W L+G+ +
Sbjct: 11 APSFSSVLKDCAVIEGQDFVLQCSVRGTPVPRITWLLNGQPI 52
Score = 44.6 bits (106), Expect = 2e-06
Identities = 22/81 (27%), Positives = 32/81 (39%), Gaps = 16/81 (19%)
Query: 30 GESFALLCEAQEN-----MWFKFIEGSSRKVAVPL-NDRVKQVSG--TLIIKEAKVEDSG 81
G+ F L C + W G P+ R +G L I++A ED G
Sbjct: 26 GQDFVLQCSVRGTPVPRITWLL--NGQ------PIQYARSTCEAGVAELHIQDALPEDHG 77
Query: 82 KYLCVVNNSVGGESVETVLTV 102
Y C+ N++G S +TV
Sbjct: 78 TYTCLAENALGQVSCSAWVTV 98
>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo
sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A*
1qa9_A
Length = 182
Score = 71.1 bits (174), Expect = 2e-15
Identities = 29/211 (13%), Positives = 58/211 (27%), Gaps = 50/211 (23%)
Query: 7 KPVGFKAPTFSSVSDI--IRFKKPGGESFALLCEAQENMWFKFIEGSSRKVAVPLNDRVK 64
+ + P+F DI I+++K + K + K D K
Sbjct: 15 QDINLDIPSFQMSDDIDDIKWEKTSDKK-------------KIAQFRKEKETFKEKDTYK 61
Query: 65 QVS-GTLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPA 123
GTL IK K +D Y + ++ G +E + +
Sbjct: 62 LFKNGTLKIKHLKTDDQDIYKVSIYDTKGKNVLEKIFDLK-------------------- 101
Query: 124 QFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNEPVF 183
I ++ +P + TC+ ++ +DGK +
Sbjct: 102 -------IQERVS---KPKISWT--CINTTLTCEVMNGTDPELNLYQDGKHLK--LSQRV 147
Query: 184 RIDSVRKEDKGMYQCVIRNEQESAQASGELK 214
++C N+ + +
Sbjct: 148 ITHKWTTSLSAKFKCTAGNKVSKESSVEPVS 178
Score = 67.6 bits (165), Expect = 5e-14
Identities = 23/139 (16%), Positives = 40/139 (28%), Gaps = 26/139 (18%)
Query: 149 GRPAQFTCKY--EGNPVKTISWMKDGKP-----VPDHNEPVF-------------RIDSV 188
G+ + + I W K E +I +
Sbjct: 14 GQDINLDIPSFQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYKLFKNGTLKIKHL 73
Query: 189 RKEDKGMYQCVIRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGN 248
+ +D+ +Y+ I + + L + V K S N C
Sbjct: 74 KTDDQDIYKVSIYDTKGKNVLEKIFDL--KIQERVSKPKISWT----CINTTLTCEVMNG 127
Query: 249 PTPEISWYLDGKKLVNAER 267
PE++ Y DGK L ++R
Sbjct: 128 TDPELNLYQDGKHLKLSQR 146
Score = 42.6 bits (100), Expect = 3e-05
Identities = 12/79 (15%), Positives = 24/79 (30%), Gaps = 18/79 (22%)
Query: 30 GESFALLCEAQEN-----MWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYL 84
+ L CE ++ + + ++S +I + S K+
Sbjct: 115 CINTTLTCEVMNGTDPELNLYQ-------------DGKHLKLSQRVITHKWTTSLSAKFK 161
Query: 85 CVVNNSVGGESVETVLTVT 103
C N V ES ++
Sbjct: 162 CTAGNKVSKESSVEPVSCP 180
>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle
isozymes; IG fold, structural genomics, NPPSFA; NMR
{Homo sapiens} SCOP: b.1.1.4
Length = 114
Score = 69.3 bits (170), Expect = 3e-15
Identities = 24/91 (26%), Positives = 35/91 (38%), Gaps = 9/91 (9%)
Query: 141 PTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVP---------DHNEPVFRIDSVRKE 191
P Q + G + K G T +WMK K + N I + R+E
Sbjct: 14 PEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSENGSKLTILAARQE 73
Query: 192 DKGMYQCVIRNEQESAQASGELKLGGRFDPP 222
G Y ++ N+ S QA L + + DPP
Sbjct: 74 HCGCYTLLVENKLGSRQAQVNLTVVDKPDPP 104
Score = 47.3 bits (113), Expect = 2e-07
Identities = 21/102 (20%), Positives = 35/102 (34%), Gaps = 17/102 (16%)
Query: 13 APTFSSVSDIIRFKKPGGESFALLCEAQEN-----MWFKFIEGSSRKVAVPLNDRVKQVS 67
P + + + GES L + W KF + + ++ +K +
Sbjct: 7 GPQIIQFPEDQKVRA--GESVELFGKVTGTQPITCTWMKF------RKQIQESEHMKVEN 58
Query: 68 G----TLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTVTAP 105
L I A+ E G Y +V N +G + LTV
Sbjct: 59 SENGSKLTILAARQEHCGCYTLLVENKLGSRQAQVNLTVVDK 100
Score = 44.2 bits (105), Expect = 3e-06
Identities = 8/47 (17%), Positives = 17/47 (36%)
Query: 221 PPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNAER 267
P I + D+ + G + +G +W K++ +E
Sbjct: 7 GPQIIQFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEH 53
>3irg_B Obscurin-like protein 1; IG-like, titin, OBSL1, complex,
alternative splicing, ATP-binding, calcium,
calmodulin-binding, cardiomyopathy; 1.30A {Homo sapiens}
PDB: 3knb_B 2wp3_O* 2wwm_C 2wwk_O
Length = 107
Score = 68.2 bits (167), Expect = 6e-15
Identities = 19/84 (22%), Positives = 29/84 (34%), Gaps = 9/84 (10%)
Query: 140 EPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVP---------DHNEPVFRIDSVRK 190
P + G A+ C G P + W K G+ + D E + +
Sbjct: 19 FPRPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAASERLSFPADGAEHGLLLTAALP 78
Query: 191 EDKGMYQCVIRNEQESAQASGELK 214
D G+Y C RN A A+ +
Sbjct: 79 TDAGVYVCRARNAAGEAYAAAAVT 102
Score = 47.8 bits (114), Expect = 1e-07
Identities = 13/47 (27%), Positives = 19/47 (40%)
Query: 221 PPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNAER 267
PP + G KC+ G P P + W G++L +ER
Sbjct: 13 PPCFLRFPRPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAASER 59
Score = 45.1 bits (107), Expect = 1e-06
Identities = 18/85 (21%), Positives = 29/85 (34%), Gaps = 15/85 (17%)
Query: 30 GESFALLCEAQEN-----MWFKFIEGSSRKVAVPLNDRVK----QVSGTLIIKEAKVEDS 80
G L C +W K G + ++R+ L++ A D+
Sbjct: 28 GAEAELKCVVLGEPPPVVVWEK--GG----QQLAASERLSFPADGAEHGLLLTAALPTDA 81
Query: 81 GKYLCVVNNSVGGESVETVLTVTAP 105
G Y+C N+ G +TV P
Sbjct: 82 GVYVCRARNAAGEAYAAAAVTVLEP 106
>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo
sapiens}
Length = 99
Score = 67.7 bits (166), Expect = 6e-15
Identities = 22/79 (27%), Positives = 30/79 (37%), Gaps = 9/79 (11%)
Query: 144 QTIDFGRPAQFTCKYEGNPVKTISWMKDGKPV---------PDHNEPVFRIDSVRKEDKG 194
T+ A+F K G P T W KDGK + D I D G
Sbjct: 16 TTVSSDSVAKFAVKATGEPRPTAIWTKDGKAITQGGKYKLSEDKGGFFLEIHKTDTSDSG 75
Query: 195 MYQCVIRNEQESAQASGEL 213
+Y C ++N S +S +L
Sbjct: 76 LYTCTVKNSAGSVSSSCKL 94
Score = 48.4 bits (116), Expect = 6e-08
Identities = 14/47 (29%), Positives = 19/47 (40%)
Query: 221 PPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNAER 267
PVI D T++ F A+G P P W DGK + +
Sbjct: 6 KPVIVTGLQDTTVSSDSVAKFAVKATGEPRPTAIWTKDGKAITQGGK 52
Score = 45.0 bits (107), Expect = 1e-06
Identities = 24/107 (22%), Positives = 33/107 (30%), Gaps = 20/107 (18%)
Query: 8 PVGFKAPTFSSV-SDIIRFKKPGGESFALLCEAQ-----ENMWFKFIEGSSRKVAVPLND 61
P+ P + D +A +W K +G A+
Sbjct: 2 PI-SSKPVIVTGLQDTTVSS---DSVAKFAVKATGEPRPTAIWTK--DG----KAITQGG 51
Query: 62 RVKQVSG----TLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTVTA 104
+ K L I + DSG Y C V NS G S LT+ A
Sbjct: 52 KYKLSEDKGGFFLEIHKTDTSDSGLYTCTVKNSAGSVSSSCKLTIKA 98
>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural
genomics, IG-fold I-SET, RGD motif, homophilic adhesion,
arterial smooth muscle cells; 0.96A {Homo sapiens}
Length = 99
Score = 66.9 bits (164), Expect = 1e-14
Identities = 19/86 (22%), Positives = 35/86 (40%), Gaps = 10/86 (11%)
Query: 139 VEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPV----------PDHNEPVFRIDSV 188
V Q++ G+ + + +G P +SW+++ +PV + RI +
Sbjct: 10 VSLMDQSVREGQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQRRFAEEAEGGLCRLRILAA 69
Query: 189 RKEDKGMYQCVIRNEQESAQASGELK 214
+ D G Y C NE + Q L+
Sbjct: 70 ERGDAGFYTCKAVNEYGARQCEARLE 95
Score = 46.1 bits (110), Expect = 5e-07
Identities = 12/47 (25%), Positives = 21/47 (44%)
Query: 221 PPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNAER 267
PP K S D+++ G + G P P +SW + + + +R
Sbjct: 5 PPTFKVSLMDQSVREGQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQR 51
Score = 46.1 bits (110), Expect = 5e-07
Identities = 17/83 (20%), Positives = 25/83 (30%), Gaps = 12/83 (14%)
Query: 30 GESFALLCEAQEN-----MWFK---FIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSG 81
G+ + Q W + + R+ A + L I A+ D+G
Sbjct: 20 GQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQRRFAEEAEGGLC----RLRILAAERGDAG 75
Query: 82 KYLCVVNNSVGGESVETVLTVTA 104
Y C N G E L V
Sbjct: 76 FYTCKAVNEYGARQCEARLEVRG 98
>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core
protein; immunoglobulin-like domain, extracellular
matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4
Length = 98
Score = 67.1 bits (164), Expect = 1e-14
Identities = 19/86 (22%), Positives = 30/86 (34%), Gaps = 5/86 (5%)
Query: 133 PPLAAGVEPTVQTIDFGRPAQFTCK-YEGNPVKTISWMK-DGKPVPDHNEP---VFRIDS 187
P + E Q++ G F C +P T+ W + +P + I +
Sbjct: 9 PIMVTVEEQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPSRAMDFNGILTIRN 68
Query: 188 VRKEDKGMYQCVIRNEQESAQASGEL 213
V+ D G Y C N Q + L
Sbjct: 69 VQPSDAGTYVCTGSNMFAMDQGTATL 94
Score = 54.4 bits (131), Expect = 5e-10
Identities = 17/79 (21%), Positives = 28/79 (35%), Gaps = 13/79 (16%)
Query: 30 GESFALLCEAQEN------MWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKY 83
G +C A+ +W + G L R +G L I+ + D+G Y
Sbjct: 25 GADVTFICTAKSKSPAYTLVWTRLHNG-------KLPSRAMDFNGILTIRNVQPSDAGTY 77
Query: 84 LCVVNNSVGGESVETVLTV 102
+C +N + L V
Sbjct: 78 VCTGSNMFAMDQGTATLHV 96
Score = 34.8 bits (80), Expect = 0.004
Identities = 10/48 (20%), Positives = 18/48 (37%), Gaps = 1/48 (2%)
Query: 221 PPVIKESFSDETLNPGPNYYFKCIA-SGNPTPEISWYLDGKKLVNAER 267
V E +++ PG + F C A S +P + W + +
Sbjct: 10 IMVTVEEQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPSRA 57
>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 110
Score = 66.6 bits (163), Expect = 2e-14
Identities = 23/95 (24%), Positives = 34/95 (35%), Gaps = 11/95 (11%)
Query: 139 VEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNEPVF-----------RIDS 187
++ I G P FTC+ GNP I W KDGK + ++ +
Sbjct: 13 MKLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDLDGTCSLHTTA 72
Query: 188 VRKEDKGMYQCVIRNEQESAQASGELKLGGRFDPP 222
+D G Y + N Q +G L + P
Sbjct: 73 STLDDDGNYTIMAANPQGRISCTGRLMVQAVNSGP 107
Score = 44.7 bits (106), Expect = 2e-06
Identities = 18/84 (21%), Positives = 26/84 (30%), Gaps = 11/84 (13%)
Query: 30 GESFALLCEAQEN-----MWFKF---IEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSG 81
G C N WFK I S + + + +L + ++D G
Sbjct: 23 GMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDL---DGTCSLHTTASTLDDDG 79
Query: 82 KYLCVVNNSVGGESVETVLTVTAP 105
Y + N G S L V A
Sbjct: 80 NYTIMAANPQGRISCTGRLMVQAV 103
Score = 44.3 bits (105), Expect = 3e-06
Identities = 13/47 (27%), Positives = 20/47 (42%)
Query: 221 PPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNAER 267
P + + G F C +GNP P+I W+ DGK++
Sbjct: 8 APFFEMKLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSD 54
>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus}
SCOP: b.1.1.1 b.1.1.3
Length = 176
Score = 67.7 bits (165), Expect = 4e-14
Identities = 24/186 (12%), Positives = 46/186 (24%), Gaps = 46/186 (24%)
Query: 30 GESFALLCEAQEN-------MWFK---FIEGSSRKVAVPLNDRVKQV--SGTLIIKEAKV 77
G L + W + + RK+ L ++ +G L IK
Sbjct: 11 GHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGDLKIKNLTR 70
Query: 78 EDSGKYLCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAA 137
+DSG Y V ++ G + L + +S P
Sbjct: 71 DDSGTYNVTVYSTNGTRILNKALDL-----------------------RILEMVSKP--- 104
Query: 138 GVEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNEPVFRIDSVRKEDKGMYQ 197
A TC+ + + + + + + ++
Sbjct: 105 ------MIYWECSNATLTCEVLEGTDVELKLYQGKEHLRSLRQKTMSYQW--TNLRAPFK 156
Query: 198 CVIRNE 203
C N
Sbjct: 157 CKAVNR 162
Score = 64.2 bits (156), Expect = 6e-13
Identities = 17/139 (12%), Positives = 39/139 (28%), Gaps = 28/139 (20%)
Query: 149 GRPAQFTCKY--EGNPVKTISWMKDGKPV-----------PDHNEPVF-----RIDSVRK 190
G + + + W + V + +I ++ +
Sbjct: 11 GHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGDLKIKNLTR 70
Query: 191 EDKGMYQCVIRNE--QESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGN 248
+D G Y + + + +L++ P+I S+ TL C
Sbjct: 71 DDSGTYNVTVYSTNGTRILNKALDLRILEMVSKPMIYWECSNATLT--------CEVLEG 122
Query: 249 PTPEISWYLDGKKLVNAER 267
E+ Y + L + +
Sbjct: 123 TDVELKLYQGKEHLRSLRQ 141
Score = 34.9 bits (80), Expect = 0.012
Identities = 6/45 (13%), Positives = 10/45 (22%)
Query: 59 LNDRVKQVSGTLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTVT 103
+ + + C N V ES V+
Sbjct: 131 QGKEHLRSLRQKTMSYQWTNLRAPFKCKAVNRVSQESEMEVVNCP 175
>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon,
OKT3 FAB, signaling protein/antibiotic complex; 2.10A
{Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E*
Length = 204
Score = 67.6 bits (164), Expect = 7e-14
Identities = 28/194 (14%), Positives = 48/194 (24%), Gaps = 32/194 (16%)
Query: 30 GESFALLCEAQEN--MWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYLCVV 87
S L C+A+ WFK +G + + + + G Y C
Sbjct: 18 DGSVLLTCDAEAKNITWFK--DG------KMIGFL-TEDKKKWNLGSNAKDPRGMYQCKG 68
Query: 88 NNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYE----ISPPLAAGVEPTV 143
+ + L V + + + + K + P
Sbjct: 69 SQNKS-----KPLQVYYRMGSADDAKKDAAKKDDAKKDDAKKDGSDGNEEMGGITQTPYK 123
Query: 144 QTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNEPVFR---------IDSVRKEDKG 194
+I G TC P I W + K + + + E G
Sbjct: 124 VSIS-GTTVILTC--PQYPGSEILWQHNDKNIGGDEDDKNIGSDEDHLSLKEFSELEQSG 180
Query: 195 MYQCVIRNEQESAQ 208
Y C R +
Sbjct: 181 YYVCYPRGSKPEDA 194
Score = 64.1 bits (155), Expect = 1e-12
Identities = 26/138 (18%), Positives = 45/138 (32%), Gaps = 27/138 (19%)
Query: 154 FTCKYEGNPVKTISWMKDGKPVP--DHNEPVFRIDSVRKEDKGMYQCVIRNE-------- 203
TC K I+W KDGK + ++ + + S K+ +GMYQC
Sbjct: 23 LTC---DAEAKNITWFKDGKMIGFLTEDKKKWNLGSNAKDPRGMYQCKGSQNKSKPLQVY 79
Query: 204 ------QESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIA--------SGNP 249
++ + + + + D ++E Y I+ P
Sbjct: 80 YRMGSADDAKKDAAKKDDAKKDDAKKDGSDGNEEMGGITQTPYKVSISGTTVILTCPQYP 139
Query: 250 TPEISWYLDGKKLVNAER 267
EI W + K + E
Sbjct: 140 GSEILWQHNDKNIGGDED 157
Score = 42.2 bits (98), Expect = 5e-05
Identities = 16/81 (19%), Positives = 28/81 (34%), Gaps = 12/81 (14%)
Query: 30 GESFALLCEAQ---ENMWFK---FIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKY 83
G + L C E +W I G + ++ + + +++E SG Y
Sbjct: 128 GTTVILTCPQYPGSEILWQHNDKNIGGDEDDKNIGSDEDH-----LSLKEFSELEQSGYY 182
Query: 84 LCVVNNSVGGESVETVLTVTA 104
+C S E L + A
Sbjct: 183 VCYPRGSK-PEDANFYLYLRA 202
>2kkq_A Myotilin; unknown function, actin-binding, cell membrane,
cytoplasm, cytoskeleton, disease mutation,
immunoglobulin domain; NMR {Homo sapiens}
Length = 116
Score = 64.0 bits (156), Expect = 2e-13
Identities = 15/86 (17%), Positives = 29/86 (33%), Gaps = 11/86 (12%)
Query: 139 VEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNEPVF-----------RIDS 187
+P + + G + C+ P + W ++ + V + + + I
Sbjct: 20 YKPQSKKVLEGDSVKLECQISAIPPPKLFWKRNNEMVQFNTDRISLYQDNTGRVTLLIKD 79
Query: 188 VRKEDKGMYQCVIRNEQESAQASGEL 213
V K+D G Y NE + L
Sbjct: 80 VNKKDAGWYTVSAVNEAGVTTCNTRL 105
Score = 46.6 bits (111), Expect = 4e-07
Identities = 19/84 (22%), Positives = 38/84 (45%), Gaps = 11/84 (13%)
Query: 30 GESFALLCEAQ-----ENMWFK---FIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSG 81
G+S L C+ + W + ++ ++ ++++ ++ TL+IK+ +D+G
Sbjct: 30 GDSVKLECQISAIPPPKLFWKRNNEMVQFNTDRISLYQDN---TGRVTLLIKDVNKKDAG 86
Query: 82 KYLCVVNNSVGGESVETVLTVTAP 105
Y N G + T L VTA
Sbjct: 87 WYTVSAVNEAGVTTCNTRLDVTAR 110
Score = 43.2 bits (102), Expect = 7e-06
Identities = 7/42 (16%), Positives = 17/42 (40%)
Query: 221 PPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKL 262
P+ + + G + +C S P P++ W + + +
Sbjct: 15 APMFIYKPQSKKVLEGDSVKLECQISAIPPPKLFWKRNNEMV 56
>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET,
muscle protein; NMR {Caenorhabditis elegans} SCOP:
b.1.1.4 PDB: 1wiu_A
Length = 93
Score = 62.7 bits (153), Expect = 4e-13
Identities = 14/85 (16%), Positives = 24/85 (28%), Gaps = 9/85 (10%)
Query: 139 VEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPD------HNEP---VFRIDSVR 189
I G + G P T +W + S +
Sbjct: 7 TASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPELLVDAKSSTTSIFFPSAK 66
Query: 190 KEDKGMYQCVIRNEQESAQASGELK 214
+ D G Y+ ++NE +A E+
Sbjct: 67 RADSGNYKLKVKNELGEDEAIFEVI 91
Score = 48.5 bits (116), Expect = 7e-08
Identities = 18/99 (18%), Positives = 29/99 (29%), Gaps = 17/99 (17%)
Query: 13 APTFSSVSDIIRFKKPGGESFALLCEAQ-----ENMWFKFIEGSSRKVAVPLNDRVKQVS 67
P + S I+ K G + L + W L + +
Sbjct: 2 KPKILTASRKIKIKA--GFTHNLEVDFIGAPDPTATWTVG------DSGAALAPELLVDA 53
Query: 68 G----TLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTV 102
++ AK DSG Y V N +G + + V
Sbjct: 54 KSSTTSIFFPSAKRADSGNYKLKVKNELGEDEAIFEVIV 92
Score = 45.0 bits (107), Expect = 1e-06
Identities = 8/47 (17%), Positives = 14/47 (29%)
Query: 221 PPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNAER 267
P I + + G + + G P P +W + A
Sbjct: 2 KPKILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPE 48
>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet,
C2-SET immunoglobulin superfamily, H-bonded G strand
PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4
b.1.1.4 PDB: 1xmw_A
Length = 186
Score = 64.1 bits (155), Expect = 1e-12
Identities = 36/186 (19%), Positives = 60/186 (32%), Gaps = 30/186 (16%)
Query: 30 GESFALLCEAQEN---MWFK---FIEGSSRKVAVPLNDRVKQVSGTLIIKE-AKVEDSGK 82
G S L C + W K + K L++++ ++VEDSG
Sbjct: 14 GTSVELTCPLDSDENLKWEKNGQELPQKHDK--------------HLVLQDFSEVEDSGY 59
Query: 83 YLCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPT 142
Y+C S + V + A + + A K + S A
Sbjct: 60 YVCYTPASNKNTYLYLKARVGSADDAKKDAAKKDDAKKDDA----KKDGSQTNKAKNLVQ 115
Query: 143 VQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPV--PDHNEPVFRIDSVRKEDKGMYQCVI 200
V TC I W+KDG + + + + + + K+ +G YQC
Sbjct: 116 VDGSRGDGSVLLTCGLTDKT---IKWLKDGSIISPLNATKNTWNLGNNAKDPRGTYQCQG 172
Query: 201 RNEQES 206
E +
Sbjct: 173 AKETSN 178
Score = 54.9 bits (131), Expect = 2e-09
Identities = 20/142 (14%), Positives = 39/142 (27%), Gaps = 28/142 (19%)
Query: 149 GRPAQFTCKYEGNPVKTISWMKDGKPVPDHNEPVFRIDSV-RKEDKGMYQCVIRNEQES- 206
G + TC + + + W K+G+ +P ++ + ED G Y C ++
Sbjct: 14 GTSVELTCPLDSDE--NLKWEKNGQELPQKHDKHLVLQDFSEVEDSGYYVCYTPASNKNT 71
Query: 207 ------------------AQASGELKLGGRFDPPVIKE---SFSDETLNPGPNYYFKCIA 245
A+ K + D + + + C
Sbjct: 72 YLYLKARVGSADDAKKDAAKKDDAKKDDAKKDGSQTNKAKNLVQVDGSRGDGSVLLTCGL 131
Query: 246 SGNPTPEISWYLDGKKLVNAER 267
+ I W DG +
Sbjct: 132 TDKT---IKWLKDGSIISPLNA 150
>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C,
C-protein, skeletal muscle fast-isoform, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 62.4 bits (152), Expect = 1e-12
Identities = 19/102 (18%), Positives = 33/102 (32%), Gaps = 10/102 (9%)
Query: 123 AQFTCKYEISPPLAAGVEPTVQTIDF--GRPAQFTCKYEGNPVKTISWMKDGKPVPDH-- 178
T + PP QT G ++G P + W K G P+
Sbjct: 11 QPVTIREIAEPPKIRLPRHLRQTYIRKVGEQLNLVVPFQGKPRPQVVWTKGGAPLDTSRV 70
Query: 179 ------NEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELK 214
+ VF + + D G Y+ ++ E A+ ++
Sbjct: 71 HVRTSDFDTVFFVRQAARSDSGEYELSVQIENMKDTATIRIR 112
Score = 51.6 bits (124), Expect = 8e-09
Identities = 16/84 (19%), Positives = 27/84 (32%), Gaps = 14/84 (16%)
Query: 30 GESFALLCEAQEN-----MWFKF---IEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSG 81
GE L+ Q +W K ++ S V R +++A DSG
Sbjct: 39 GEQLNLVVPFQGKPRPQVVWTKGGAPLDTSRVHV------RTSDFDTVFFVRQAARSDSG 92
Query: 82 KYLCVVNNSVGGESVETVLTVTAP 105
+Y V ++ + V
Sbjct: 93 EYELSVQIENMKDTATIRIRVVEK 116
Score = 37.4 bits (87), Expect = 0.001
Identities = 11/61 (18%), Positives = 18/61 (29%), Gaps = 3/61 (4%)
Query: 205 ESAQASGELKLGGRFDPPVI---KESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKK 261
S + + + +PP I + G G P P++ W G
Sbjct: 5 SSGTLAQPVTIREIAEPPKIRLPRHLRQTYIRKVGEQLNLVVPFQGKPRPQVVWTKGGAP 64
Query: 262 L 262
L
Sbjct: 65 L 65
>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain,
beta-sandwhich, I-SET, structural protein; 2.10A {Homo
sapiens} SCOP: b.1.1.4
Length = 99
Score = 61.5 bits (150), Expect = 1e-12
Identities = 17/90 (18%), Positives = 25/90 (27%), Gaps = 10/90 (11%)
Query: 139 VEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVP----------DHNEPVFRIDSV 188
QT+ G A F + G P W K+G + + N I V
Sbjct: 10 ERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNVCELVIRDV 69
Query: 189 RKEDKGMYQCVIRNEQESAQASGELKLGGR 218
ED N + L + +
Sbjct: 70 TGEDSASIMVKAINIAGETSSHAFLLVQAK 99
Score = 47.3 bits (113), Expect = 2e-07
Identities = 15/47 (31%), Positives = 24/47 (51%)
Query: 221 PPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNAER 267
P I E +T+ G + +F+ G P PE WY +G K+ ++R
Sbjct: 5 APKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDR 51
Score = 42.6 bits (101), Expect = 8e-06
Identities = 19/64 (29%), Positives = 24/64 (37%), Gaps = 7/64 (10%)
Query: 44 WFK---FIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYLCVVNNSVGGESVETVL 100
W+K IE S R D V L+I++ EDS + N G S L
Sbjct: 39 WYKNGVKIERSDRIYWYWPEDNV----CELVIRDVTGEDSASIMVKAINIAGETSSHAFL 94
Query: 101 TVTA 104
V A
Sbjct: 95 LVQA 98
>3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet,
STRU genomics, berkeley structural genomics center,
BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A
Length = 137
Score = 62.3 bits (151), Expect = 2e-12
Identities = 20/98 (20%), Positives = 33/98 (33%), Gaps = 22/98 (22%)
Query: 139 VEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPD--------------------- 177
P Q G + C+ G+PV I W +G+ D
Sbjct: 26 QAPLSQQRWVGGSVELHCEAVGSPVPEIQWWFEGQGPNDICSQLWDGARLDRVHIHATYH 85
Query: 178 -HNEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELK 214
H ID++ +ED G Y+C N+ + + +
Sbjct: 86 QHAASTISIDTLVEEDTGTYECRASNDPDRNHLTRAPR 123
Score = 53.1 bits (127), Expect = 3e-09
Identities = 24/117 (20%), Positives = 36/117 (30%), Gaps = 18/117 (15%)
Query: 3 GSDLKPVGFKAPTFSSVSDIIRFKKPGGESFALLCEAQEN-----MWFK----------F 47
S L P G F + G S L CEA + W+
Sbjct: 11 SSGLVPRGSHMAGFVQAPLSQQRWV--GGSVELHCEAVGSPVPEIQWWFEGQGPNDICSQ 68
Query: 48 IEGSSRKVAVPLNDRVKQ-VSGTLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTVT 103
+ +R V ++ Q + T+ I ED+G Y C +N + V
Sbjct: 69 LWDGARLDRVHIHATYHQHAASTISIDTLVEEDTGTYECRASNDPDRNHLTRAPRVK 125
Score = 48.5 bits (115), Expect = 1e-07
Identities = 10/47 (21%), Positives = 19/47 (40%)
Query: 221 PPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNAER 267
++ + G + C A G+P PEI W+ +G+ +
Sbjct: 21 MAGFVQAPLSQQRWVGGSVELHCEAVGSPVPEIQWWFEGQGPNDICS 67
>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo
sapiens}
Length = 103
Score = 60.4 bits (147), Expect = 4e-12
Identities = 13/85 (15%), Positives = 24/85 (28%), Gaps = 9/85 (10%)
Query: 139 VEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPV---------PDHNEPVFRIDSVR 189
+ + G+ +F + P + W +G + I
Sbjct: 13 LRMRSHRVPCGQNTRFILNVQSKPTAEVKWYHNGVELQESSKIHYTNTSGVLTLEILDCH 72
Query: 190 KEDKGMYQCVIRNEQESAQASGELK 214
+D G Y+ V N + A L
Sbjct: 73 TDDSGTYRAVCTNYKGEASDYATLD 97
Score = 48.1 bits (115), Expect = 9e-08
Identities = 12/47 (25%), Positives = 18/47 (38%)
Query: 221 PPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNAER 267
P I + G N F PT E+ WY +G +L + +
Sbjct: 8 APRITLRMRSHRVPCGQNTRFILNVQSKPTAEVKWYHNGVELQESSK 54
Score = 46.1 bits (110), Expect = 6e-07
Identities = 19/84 (22%), Positives = 30/84 (35%), Gaps = 13/84 (15%)
Query: 30 GESFALLCEAQEN-----MWFKF---IEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSG 81
G++ + Q W+ ++ SS+ + + TL I + +DSG
Sbjct: 23 GQNTRFILNVQSKPTAEVKWYHNGVELQESSKIHYTNTSGVL-----TLEILDCHTDDSG 77
Query: 82 KYLCVVNNSVGGESVETVLTVTAP 105
Y V N G S L VT
Sbjct: 78 TYRAVCTNYKGEASDYATLDVTGG 101
>2v9t_A Roundabout homolog 1; structural protein-receptor complex,
developmental protein, domain, roundabout, chemotaxis,
LRR domain; 1.70A {Homo sapiens}
Length = 117
Score = 60.2 bits (146), Expect = 6e-12
Identities = 24/81 (29%), Positives = 32/81 (39%), Gaps = 16/81 (19%)
Query: 139 VEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVP-DHNEPVFRI------------ 185
P+ + G PA CK EG P TI W K G+ V D ++P
Sbjct: 14 EHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSLFFLR 73
Query: 186 ---DSVRKEDKGMYQCVIRNE 203
+ D+G+Y CV RN
Sbjct: 74 IVHGRKSRPDEGVYVCVARNY 94
Score = 51.3 bits (123), Expect = 1e-08
Identities = 17/42 (40%), Positives = 22/42 (52%)
Query: 221 PPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKL 262
PP I E SD ++ G C A G PTP I WY G+++
Sbjct: 9 PPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERV 50
Score = 35.9 bits (83), Expect = 0.003
Identities = 24/87 (27%), Positives = 33/87 (37%), Gaps = 11/87 (12%)
Query: 30 GESFALLCEAQEN-----MWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKE-----AKVED 79
GE L C+A+ W+K E P + R+ SG+L D
Sbjct: 24 GEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSLFFLRIVHGRKSRPD 83
Query: 80 SGKYLCVVNNSVG-GESVETVLTVTAP 105
G Y+CV N +G S + L V A
Sbjct: 84 EGVYVCVARNYLGEAVSHDASLEVAAA 110
>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND,
structural protein, muscle, antibo; 1.69A {Homo sapiens}
Length = 97
Score = 59.3 bits (144), Expect = 9e-12
Identities = 14/85 (16%), Positives = 30/85 (35%), Gaps = 10/85 (11%)
Query: 140 EPTVQTIDFGRPAQFTCKYEGNPVKT-ISWMKDGKPVP---------DHNEPVFRIDSVR 189
+ + G ++ CK E T ++W + + + + + +
Sbjct: 7 QIMHAVGEEGGHVKYVCKIENYDQSTQVTWYFGVRQLENSEKYEITYEDGVAILYVKDIT 66
Query: 190 KEDKGMYQCVIRNEQESAQASGELK 214
K D G Y+C + N+ + EL
Sbjct: 67 KLDDGTYRCKVVNDYGEDSSYAELF 91
Score = 43.1 bits (102), Expect = 5e-06
Identities = 12/37 (32%), Positives = 15/37 (40%)
Query: 69 TLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTVTAP 105
L +K+ D G Y C V N G +S L V
Sbjct: 59 ILYVKDITKLDDGTYRCKVVNDYGEDSSYAELFVKGV 95
Score = 38.1 bits (89), Expect = 3e-04
Identities = 7/47 (14%), Positives = 18/47 (38%), Gaps = 1/47 (2%)
Query: 222 PVIKESFSDETLNPGPNYYFKCIASGNPTP-EISWYLDGKKLVNAER 267
++ G + + C +++WY ++L N+E+
Sbjct: 2 AMVSGQIMHAVGEEGGHVKYVCKIENYDQSTQVTWYFGVRQLENSEK 48
>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor
tyrosine kinase, 3D-domain swapping, transferase; 1.90A
{Homo sapiens} SCOP: b.1.1.4
Length = 118
Score = 59.4 bits (144), Expect = 1e-11
Identities = 14/91 (15%), Positives = 28/91 (30%), Gaps = 16/91 (17%)
Query: 152 AQFTCKYEGNPVKTISWMKDGKPVP-------------DHNEPVFRIDSVRKEDKGMYQC 198
GNP T+ W+ +G+P+ + +E + + G Y
Sbjct: 23 HCIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQEGEISEGCLLFNKPTHYNNGNYTL 82
Query: 199 VIRNEQESAQASGELKLGGRFDPPVIKESFS 229
+ +N +A + P + S
Sbjct: 83 IAKNPLGTANQTINGHF---LKEPFPVDEVS 110
Score = 45.2 bits (107), Expect = 1e-06
Identities = 10/66 (15%), Positives = 20/66 (30%), Gaps = 6/66 (9%)
Query: 44 WFKFIEG----SSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYLCVVNNSVGGESVETV 99
W G S+ + V + G L+ + ++G Y + N +G +
Sbjct: 39 WLH--NGQPLRESKIIHVEYYQEGEISEGCLLFNKPTHYNNGNYTLIAKNPLGTANQTIN 96
Query: 100 LTVTAP 105
Sbjct: 97 GHFLKE 102
Score = 44.8 bits (106), Expect = 2e-06
Identities = 10/47 (21%), Positives = 19/47 (40%), Gaps = 3/47 (6%)
Query: 221 PPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNAER 267
PP + E + + + GNP P + W +G+ L ++
Sbjct: 8 PPRVVSLEEPE---LRLEHCIEFVVRGNPPPTLHWLHNGQPLRESKI 51
>1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG
superfamily, rossmann fold, metal mediated protein
interf immune system; HET: NAG; 3.30A {Homo sapiens}
SCOP: b.1.1.3 b.1.1.4
Length = 291
Score = 60.3 bits (145), Expect = 7e-11
Identities = 33/218 (15%), Positives = 57/218 (26%), Gaps = 46/218 (21%)
Query: 58 PLNDRVKQVSG--TLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTVTAPLAAGVEPTVQ 115
PL + + G + + + V++ + +C N G + +T LTV
Sbjct: 36 PLPKKELLLPGNNRKVYELSNVQEDSQPMCYSNCPDGQSTAKTFLTV------------- 82
Query: 116 TIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEGN---PVKTISWMKDG 172
P + P G+ C+ EG T+ ++
Sbjct: 83 ---------------YWTPERVELAPLPSWQPVGKNLTLRCQVEGGAPRANLTVVLLRGE 127
Query: 173 KPV---PDHNEPV---FRIDSVRKEDKGMYQCVIRNEQESAQAS------GELKLGGRFD 220
K + P EP + R + C + +L
Sbjct: 128 KELKREPAVGEPAEVTTTVLVRRDHHGANFSCRTELDLRPQGLELFENTSAPYQLQTFVL 187
Query: 221 PPVIKESFSDETLNPGPNYYFKCIASGN-PTPEISWYL 257
P + S L C G P E +L
Sbjct: 188 PATPPQLVSPRVLEVDTQGTVVCSLDGLFPVSEAQVHL 225
Score = 52.6 bits (125), Expect = 3e-08
Identities = 16/131 (12%), Positives = 32/131 (24%), Gaps = 7/131 (5%)
Query: 139 VEPTVQTIDFGRPAQFTCKYEGNPVKTISWMK--DGKPVPDHNEPVFRIDSVRKEDKGMY 196
V P+ + G TC + K + K + + ++
Sbjct: 4 VSPSKVILPRGGSVLVTCSTSCDQPKLLGIETPLPKKELLLPGNNRKVYELSNVQEDSQP 63
Query: 197 QCVIRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGN---PTPEI 253
C + A L + + + + G N +C G +
Sbjct: 64 MCYSNCPDGQSTAKTFLTVYWTPERVEL--APLPSWQPVGKNLTLRCQVEGGAPRANLTV 121
Query: 254 SWYLDGKKLVN 264
K+L
Sbjct: 122 VLLRGEKELKR 132
Score = 34.8 bits (79), Expect = 0.018
Identities = 13/80 (16%), Positives = 22/80 (27%), Gaps = 9/80 (11%)
Query: 30 GESFALLCE------AQENMWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKY 83
++C E + V + ++ ED G
Sbjct: 203 DTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPTVTYGNDSFSAKASV---SVTAEDEGTQ 259
Query: 84 LCVVNNSVGGESVETVLTVT 103
+G +S ET+ TVT
Sbjct: 260 RLTCAVILGNQSQETLQTVT 279
>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain,
SLOW-type myosin-binding protein C, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 100
Score = 56.6 bits (137), Expect = 8e-11
Identities = 16/76 (21%), Positives = 26/76 (34%), Gaps = 11/76 (14%)
Query: 144 QTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNEPVFR---------IDSVRKEDKG 194
QT++ G+ C+ N W K+G PV + + I + ED+G
Sbjct: 17 QTVNLGKEICLKCEISENI--PGKWTKNGLPVQESDRLKVVQKGRIHKLVIANALTEDEG 74
Query: 195 MYQCVIRNEQESAQAS 210
Y + A
Sbjct: 75 DYVFAPDAYNVTLPAK 90
Score = 45.8 bits (109), Expect = 7e-07
Identities = 23/87 (26%), Positives = 36/87 (41%), Gaps = 15/87 (17%)
Query: 30 GESFALLCEAQEN---MWFKFIEGSSRKVAVPLNDRVKQVSG----TLIIKEAKVEDSGK 82
G+ L CE EN W K G + V +DR+K V L+I A ED G
Sbjct: 22 GKEICLKCEISENIPGKWTK--NG----LPVQESDRLKVVQKGRIHKLVIANALTEDEGD 75
Query: 83 YLCVVNNSVGGESVETVLTVTAPLAAG 109
Y+ + ++ + V + ++G
Sbjct: 76 YVFAPDA--YNVTLPAKVHVISGPSSG 100
Score = 38.1 bits (89), Expect = 3e-04
Identities = 12/47 (25%), Positives = 20/47 (42%), Gaps = 2/47 (4%)
Query: 221 PPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNAER 267
I +D+T+N G KC S N + W +G + ++R
Sbjct: 7 GLKILTPLTDQTVNLGKEICLKCEISENIPGK--WTKNGLPVQESDR 51
>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily.,
cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A
Length = 231
Score = 59.1 bits (142), Expect = 1e-10
Identities = 28/168 (16%), Positives = 64/168 (38%), Gaps = 13/168 (7%)
Query: 100 LTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYE 159
+ ++ P P V+ + G+ C + +E + RP + + +
Sbjct: 2 VRLSVP------PLVEVM-RGKSVILDCTPTGTHDHYM-LEWFLTDRSGARPRLASAEMQ 53
Query: 160 GNPVKTISWMKDGKPVPDH--NEPVFRIDSVRKEDKGMYQC-VIRNEQESAQASGELKLG 216
G+ ++ G+ P ++ + + D+ Y C V +A+A+ L +
Sbjct: 54 GSELQVTMHDTRGRSPPYQLDSQGRLVLAEAQVGDERDYVCVVRAGAAGTAEATARLNVF 113
Query: 217 GRFDPPVIKESFSD-ETLNPGPNYYFKCIAS-GNPTPEISWYLDGKKL 262
+ + + + + C + GNP P+I+WY +G++L
Sbjct: 114 AKPEATEVSPNKGTLSVMEDSAQEIATCNSRNGNPAPKITWYRNGQRL 161
Score = 55.2 bits (132), Expect = 3e-09
Identities = 27/138 (19%), Positives = 45/138 (32%), Gaps = 30/138 (21%)
Query: 67 SGTLIIKEAKVEDSGKYLCVVNNSVGGE-SVETVLTVTAPLAAGVEPTVQTIDFGRPAQF 125
G L++ EA+V D Y+CVV G L V A P
Sbjct: 76 QGRLVLAEAQVGDERDYVCVVRAGAAGTAEATARLNVFAK------P------------- 116
Query: 126 TCKYEISPPLAAGVEPTVQTIDFGRPAQFTCK-YEGNPVKTISWMKDGKPVP---DHNEP 181
+ + T+ ++ TC GNP I+W ++G+ + + N
Sbjct: 117 ------EATEVSPNKGTLSVMEDSAQEIATCNSRNGNPAPKITWYRNGQRLEVPVEMNPE 170
Query: 182 VFRIDSVRKEDKGMYQCV 199
+ +E G+
Sbjct: 171 GYMTSRTVREASGLLSLT 188
>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed
death-1 ligand 1, complex, costimulatory, immune system;
2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A
Length = 222
Score = 58.9 bits (142), Expect = 1e-10
Identities = 25/179 (13%), Positives = 50/179 (27%), Gaps = 44/179 (24%)
Query: 59 LNDRVKQVSGTLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTID 118
L D++ + L I + K++D+G Y C+++ G + + V
Sbjct: 71 LKDQLSLGNAALQITDVKLQDAGVYRCMISYG-GADYKRITVKV---------------- 113
Query: 119 FGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEGNPVKTISWMK-DGKPVPD 177
+ P + + + TC+ EG P + W D + +
Sbjct: 114 -------------NAPYNKINQRILVVDPVTSEHELTCQAEGYPKAEVIWTSSDHQVLSG 160
Query: 178 HNEPVFRIDS-----------VRKEDKGMYQCVIRNEQESAQASGELKLGG--RFDPPV 223
+ ++ C R + EL + PP
Sbjct: 161 KTTTTNSKREEKLFNVTSTLRINTTTNEIFYCTFRRLDPEENHTAELVIPELPLAHPPN 219
Score = 56.2 bits (135), Expect = 9e-10
Identities = 21/159 (13%), Positives = 49/159 (30%), Gaps = 36/159 (22%)
Query: 139 VEPTVQTIDFGRPAQFTCKYEGNPVK-----TISWMKDGKPV---------PDHNEPVF- 183
V + +++G CK+ + W + K + +
Sbjct: 6 VPKDLYVVEYGSNMTIECKFPVEKQLDLAALIVYWEMEDKNIIQFVHGEEDLKVQHSSYR 65
Query: 184 -----------------RIDSVRKEDKGMYQCVIRNEQESAQASGELKLGGRFDPPVIKE 226
+I V+ +D G+Y+C+I + + +K+ ++ +
Sbjct: 66 QRARLLKDQLSLGNAALQITDVKLQDAGVYRCMI-SYGGADYKRITVKVNAPYNKINQRI 124
Query: 227 SFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNA 265
D + C A G P E+ W ++++
Sbjct: 125 LVVD---PVTSEHELTCQAEGYPKAEVIWTSSDHQVLSG 160
Score = 45.4 bits (107), Expect = 6e-06
Identities = 14/87 (16%), Positives = 27/87 (31%), Gaps = 12/87 (13%)
Query: 28 PGGESFALLCEAQ-----ENMWFK----FIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVE 78
P L C+A+ E +W + G + +++ V+ TL I
Sbjct: 129 PVTSEHELTCQAEGYPKAEVIWTSSDHQVLSGKTTTTNSKREEKLFNVTSTLRINT---T 185
Query: 79 DSGKYLCVVNNSVGGESVETVLTVTAP 105
+ + C E+ L +
Sbjct: 186 TNEIFYCTFRRLDPEENHTAELVIPEL 212
>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens}
SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B
Length = 171
Score = 58.0 bits (140), Expect = 1e-10
Identities = 21/186 (11%), Positives = 43/186 (23%), Gaps = 50/186 (26%)
Query: 30 GESFALLCEAQEN----MWFK------FIEGSSRKVAVPLNDRVKQV--SGTLIIKEAKV 77
+ + +W K +E S + +RV SG+L I
Sbjct: 10 YGNVTFHVPSNVPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNLTS 69
Query: 78 EDSGKYLCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAA 137
D +Y N L V ++ +P +
Sbjct: 70 SDEDEYEMESPNITDTMKFF--LYVLEMVS---KPMIYWE-------------------- 104
Query: 138 GVEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNEPVFRIDSVRKEDKGMYQ 197
A TC+ + + + + + + + ++
Sbjct: 105 -----------CSNATLTCEVLEGTDVELKLYQGKEHLRSLRQKT--MSYQWTNLRAPFK 151
Query: 198 CVIRNE 203
C N
Sbjct: 152 CKAVNR 157
Score = 54.9 bits (132), Expect = 1e-09
Identities = 21/138 (15%), Positives = 38/138 (27%), Gaps = 30/138 (21%)
Query: 149 GRPAQFTCKYEGNPVKTISWMKDGKPVPDHNEPVF-------------------RIDSVR 189
F P+K + W K V + F I ++
Sbjct: 10 YGNVTFHVP-SNVPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNLT 68
Query: 190 KEDKGMYQCVIRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNP 249
D+ Y+ N ++ + L + P+I S+ TL C
Sbjct: 69 SSDEDEYEMESPNITDTMKFF--LYVLEMVSKPMIYWECSNATLT--------CEVLEGT 118
Query: 250 TPEISWYLDGKKLVNAER 267
E+ Y + L + +
Sbjct: 119 DVELKLYQGKEHLRSLRQ 136
Score = 33.7 bits (77), Expect = 0.024
Identities = 11/74 (14%), Positives = 20/74 (27%), Gaps = 8/74 (10%)
Query: 30 GESFALLCEAQENMWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYLCVVNN 89
+ L CE E G+ ++ + + + + C N
Sbjct: 105 CSNATLTCEVLE--------GTDVELKLYQGKEHLRSLRQKTMSYQWTNLRAPFKCKAVN 156
Query: 90 SVGGESVETVLTVT 103
V ES V+
Sbjct: 157 RVSQESEMEVVNCP 170
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG
containing, ligand binding protein,membr protein; HET:
NAG MAN; 2.70A {Homo sapiens}
Length = 477
Score = 59.7 bits (145), Expect = 2e-10
Identities = 21/105 (20%), Positives = 33/105 (31%), Gaps = 13/105 (12%)
Query: 118 DFGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPD 177
D P FTC + +D G QF C+ +G+P I W+ K +
Sbjct: 373 DVLLPNYFTC----RRARIRDRKAQQVFVDEGHTVQFVCRADGDPPPAILWLSPRKHLVS 428
Query: 178 HNEPVF---------RIDSVRKEDKGMYQCVIRNEQESAQASGEL 213
+ + +D G Y C+ N + L
Sbjct: 429 AKSNGRLTVFPDGTLEVRYAQVQDNGTYLCIAANAGGNDSMPAHL 473
Score = 57.0 bits (138), Expect = 1e-09
Identities = 27/113 (23%), Positives = 47/113 (41%), Gaps = 11/113 (9%)
Query: 3 GSDLKPVGFKAPT--FSSVSDIIRFKKPG------GESFALLCEAQEN--MWFKFIEGSS 52
G + K F+ IR +K G + +C A + ++
Sbjct: 365 GKEFKDFPDVLLPNYFTCRRARIRDRKAQQVFVDEGHTVQFVCRADGDPPPAILWLSPRK 424
Query: 53 RKVAVPLNDRVK-QVSGTLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTVTA 104
V+ N R+ GTL ++ A+V+D+G YLC+ N+ G +S+ L V +
Sbjct: 425 HLVSAKSNGRLTVFPDGTLEVRYAQVQDNGTYLCIAANAGGNDSMPAHLHVRS 477
Score = 43.9 bits (104), Expect = 3e-05
Identities = 14/51 (27%), Positives = 21/51 (41%), Gaps = 1/51 (1%)
Query: 218 RFDPPVIKESF-SDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNAER 267
I++ ++ G F C A G+P P I W K LV+A+
Sbjct: 381 TCRRARIRDRKAQQVFVDEGHTVQFVCRADGDPPPAILWLSPRKHLVSAKS 431
>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK
receptor, receptor tyrosine kinase, 3D-domain swapping,
transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB:
1hcf_X
Length = 103
Score = 55.9 bits (135), Expect = 2e-10
Identities = 12/90 (13%), Positives = 24/90 (26%), Gaps = 17/90 (18%)
Query: 149 GRPAQFTCKYEGNPVKTISWMKDGKPVPDHNEPVFR--------------IDSVRKEDKG 194
+GNP + W +G + + + +D+ + G
Sbjct: 16 DHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNG 75
Query: 195 MYQCVIRNEQESAQASGELKLGGRFDPPVI 224
Y + +NE + P I
Sbjct: 76 DYTLIAKNEYGKDEKQISAHF---MGWPGI 102
Score = 48.6 bits (116), Expect = 7e-08
Identities = 13/101 (12%), Positives = 26/101 (25%), Gaps = 13/101 (12%)
Query: 13 APTFSSVSDIIRFKKPGGESFALLCEAQEN-----MWFK---FIEGSSRKVAVPLNDRVK 64
APT + + + + + N WF + S
Sbjct: 4 APTITFLESPTS-----DHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHT 58
Query: 65 QVSGTLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTVTAP 105
+ G L + ++G Y + N G + +
Sbjct: 59 EYHGCLQLDNPTHMNNGDYTLIAKNEYGKDEKQISAHFMGW 99
Score = 44.3 bits (105), Expect = 2e-06
Identities = 10/47 (21%), Positives = 18/47 (38%), Gaps = 3/47 (6%)
Query: 221 PPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNAER 267
P I E+ ++ GNP P + W+ +G L ++
Sbjct: 4 APTITFL---ESPTSDHHWCIPFTVKGNPKPALQWFYNGAILNESKY 47
>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C,
C-protein, skeletal muscle fast- isoform, MYBPCF,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 101
Score = 55.4 bits (134), Expect = 2e-10
Identities = 15/82 (18%), Positives = 26/82 (31%), Gaps = 14/82 (17%)
Query: 140 EPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNEPVFR-------------ID 186
Q + G + + + WMK+G + + R
Sbjct: 14 PLEDQQVFVGDRVEMAVEV-SEEGAQVMWMKNGVELTREDSFKARYRFKKDGKRHILIFS 72
Query: 187 SVRKEDKGMYQCVIRNEQESAQ 208
V +ED+G YQ + Q A+
Sbjct: 73 DVVQEDRGRYQVITNGGQCEAE 94
Score = 36.5 bits (85), Expect = 0.001
Identities = 10/37 (27%), Positives = 13/37 (35%), Gaps = 4/37 (10%)
Query: 69 TLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTVTAP 105
LI + ED G+Y + N E L V
Sbjct: 68 ILIFSDVVQEDRGRYQVITNGG----QCEAELIVEEK 100
Score = 35.8 bits (83), Expect = 0.002
Identities = 8/47 (17%), Positives = 16/47 (34%), Gaps = 1/47 (2%)
Query: 221 PPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNAER 267
P +I D+ + G S ++ W +G +L +
Sbjct: 8 PVLIVTPLEDQQVFVGDRVEMAVEVS-EEGAQVMWMKNGVELTREDS 53
>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system;
3.00A {Homo sapiens}
Length = 193
Score = 57.7 bits (139), Expect = 2e-10
Identities = 24/146 (16%), Positives = 42/146 (28%), Gaps = 31/146 (21%)
Query: 67 SGTLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFT 126
S +L + K+ED+G Y ++ + L + L V T T
Sbjct: 69 SYSLQLSNLKMEDTGSYRAQISTKTSAKLSSYTLRILRQLR---NIQV-TNHSQLFQNMT 124
Query: 127 CKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYE-GNPVKTISWMKDGKPVPDHNEPVFRI 185
C+ TC E + + W G + ++P +
Sbjct: 125 CE-----------------------LHLTCSVEDADDNVSFRWEALGNTL--SSQPNLTV 159
Query: 186 DSV-RKEDKGMYQCVIRNEQESAQAS 210
R + Y C+ N + S
Sbjct: 160 SWDPRISSEQDYTCIAENAVSNLSFS 185
Score = 50.4 bits (120), Expect = 8e-08
Identities = 19/142 (13%), Positives = 42/142 (29%), Gaps = 27/142 (19%)
Query: 149 GRPAQFTCKY-EGNPVKTISWMKDGKPVP--------------DHNEPVFR--------- 184
G ++ G V I+W+ + + + + R
Sbjct: 13 GESVTLPLEFPAGEKVNFITWLFNETSLAFIVPHETKSPEIHVTNPKQGKRLNFTQSYSL 72
Query: 185 -IDSVRKEDKGMYQCVIRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKC 243
+ +++ ED G Y+ I + + +S L++ + + S N + C
Sbjct: 73 QLSNLKMEDTGSYRAQISTKTSAKLSSYTLRILRQLRNIQVTNH-SQLFQNMTCELHLTC 131
Query: 244 IA-SGNPTPEISWYLDGKKLVN 264
+ W G L +
Sbjct: 132 SVEDADDNVSFRWEALGNTLSS 153
>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling
protein complex, angiogenesis, glycoprotein, HOST-virus
interaction, membrane; HET: NAG BMA; 2.70A {Homo
sapiens} PDB: 2x1x_R*
Length = 213
Score = 57.9 bits (139), Expect = 3e-10
Identities = 26/222 (11%), Positives = 58/222 (26%), Gaps = 29/222 (13%)
Query: 14 PTFSSVSDIIRFKKPGGESFALLCEAQE-NMWFKFIEGSSRKVAVPLNDRVKQVSGT-LI 71
+ S ++ + ++ + C N+ K VP +R+ S
Sbjct: 8 ASVSDQHGVVYITENKNKTVVIPCLGSISNLNVSLCARYPEKRFVPDGNRISWDSKKGFT 67
Query: 72 IKEAKVEDSGKYLCVVNNSVGGESVETVLTVTAPLA----AGVEPTVQTIDFGRPAQFTC 127
I + +G C + + V + G C
Sbjct: 68 IPSYMISYAGMVFCEAKINDESYQSIMYIVVVVGYRIYDVVLSPSHGIELSVGEKLVLNC 127
Query: 128 KYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNEPVFR--- 184
+ F +Y + + + +E
Sbjct: 128 TARTELNV---------------GIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLST 172
Query: 185 --IDSVRKEDKGMYQCVIRNEQESAQASGELKLGGRFDPPVI 224
ID V + D+G+Y C + + + S +++ + P+
Sbjct: 173 LTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRV---HEDPIE 211
Score = 54.0 bits (129), Expect = 5e-09
Identities = 25/160 (15%), Positives = 42/160 (26%), Gaps = 21/160 (13%)
Query: 118 DFGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEGNPVKTISWMK------- 170
D+ P F T + + C +S
Sbjct: 1 DYRSP--FIASVSDQH------GVVYITENKNKTVVIPCLG-SISNLNVSLCARYPEKRF 51
Query: 171 --DGKPVPDHNEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLGGRFDPPVIKESF 228
DG + ++ F I S GM C + ES Q+ + + + + S
Sbjct: 52 VPDGNRISWDSKKGFTIPSYMISYAGMVFCEAKINDESYQSIMYIVVVVGYRIYDVVLSP 111
Query: 229 SDET-LNPGPNYYFKCIASGNPTP--EISWYLDGKKLVNA 265
S L+ G C A + +W K +
Sbjct: 112 SHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHK 151
>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 115
Score = 55.5 bits (134), Expect = 3e-10
Identities = 12/79 (15%), Positives = 24/79 (30%), Gaps = 10/79 (12%)
Query: 140 EPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVP----------DHNEPVFRIDSVR 189
+ + G A F C+ + + W D P+ V + +
Sbjct: 19 DLEDVDVQEGSSATFRCRISPANYEPVHWFLDKTPLHANELNEIDAQPGGYHVLTLRQLA 78
Query: 190 KEDKGMYQCVIRNEQESAQ 208
+D G +++ SA
Sbjct: 79 LKDSGTIYFEAGDQRASAA 97
Score = 47.0 bits (112), Expect = 3e-07
Identities = 14/61 (22%), Positives = 21/61 (34%), Gaps = 2/61 (3%)
Query: 207 AQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNAE 266
+ + GR I E D + G + F+C S + W+LD L E
Sbjct: 1 GSSGSSGLVQGR--RVHIIEDLEDVDVQEGSSATFRCRISPANYEPVHWFLDKTPLHANE 58
Query: 267 R 267
Sbjct: 59 L 59
Score = 38.9 bits (91), Expect = 3e-04
Identities = 13/84 (15%), Positives = 21/84 (25%), Gaps = 16/84 (19%)
Query: 30 GESFALLCEAQEN-----MWFKF---IEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSG 81
G S C WF + + L +++ ++DSG
Sbjct: 28 GSSATFRCRISPANYEPVHWFLDKTPLHANELNEIDAQPGGYH----VLTLRQLALKDSG 83
Query: 82 KYLCVVNNSVGGESVETVLTVTAP 105
G + L VT
Sbjct: 84 TIYFE----AGDQRASAALRVTEK 103
>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2,
structural genomics, NPPSFA; NMR {Mus musculus}
Length = 106
Score = 55.1 bits (133), Expect = 3e-10
Identities = 21/75 (28%), Positives = 25/75 (33%), Gaps = 10/75 (13%)
Query: 144 QTIDFGRPAQFTCKYEGNPVKTISWMKDGKPV---------PDHNEPVFRIDSVRKEDKG 194
T+ A F C+ V T W K+G V ID VR ED+G
Sbjct: 18 LTVKAAEQAVFKCEVSDEKV-TGKWYKNGVEVRPSKRITISHVGRFHKLVIDDVRPEDEG 76
Query: 195 MYQCVIRNEQESAQA 209
Y V S A
Sbjct: 77 DYTFVPDGYALSLSA 91
Score = 39.3 bits (92), Expect = 1e-04
Identities = 18/84 (21%), Positives = 27/84 (32%), Gaps = 16/84 (19%)
Query: 30 GESFALLCEAQEN----MWFKFIEGSSRKVAVPLNDRVKQVSG----TLIIKEAKVEDSG 81
E CE + W+K G V V + R+ L+I + + ED G
Sbjct: 23 AEQAVFKCEVSDEKVTGKWYK--NG----VEVRPSKRITISHVGRFHKLVIDDVRPEDEG 76
Query: 82 KYLCVVNNSVGGESVETVLTVTAP 105
Y V + S+ L
Sbjct: 77 DYTFVPDGYAL--SLSAKLNFLEI 98
Score = 37.8 bits (88), Expect = 5e-04
Identities = 10/47 (21%), Positives = 19/47 (40%), Gaps = 1/47 (2%)
Query: 221 PPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNAER 267
+ + +D T+ FKC S WY +G ++ ++R
Sbjct: 8 QLEVLQDIADLTVKAAEQAVFKCEVSD-EKVTGKWYKNGVEVRPSKR 53
>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase,
glycoprotein, receptor protei tyrosine phosphatase, cell
adhesion; HET: NAG; 3.10A {Homo sapiens}
Length = 731
Score = 59.0 bits (142), Expect = 4e-10
Identities = 21/109 (19%), Positives = 33/109 (30%), Gaps = 1/109 (0%)
Query: 155 TCKYEGNPVKTISWMKDGKPVPDHNEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELK 214
K P+ W G P N I + + VI + + A E+K
Sbjct: 97 YVKVNNGPLGNPIWNISGDPTRTWNRAELAISTFWPNFYQVIFEVITSGHQGYLAIDEVK 156
Query: 215 LGGRFDPPVIK-ESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKL 262
+ G + +N G F+C A G +L G +
Sbjct: 157 VLGHPCTRTPHFLRIQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDV 205
Score = 40.5 bits (94), Expect = 4e-04
Identities = 27/155 (17%), Positives = 40/155 (25%), Gaps = 37/155 (23%)
Query: 68 GTLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTC 127
L I V+ + G + V P +T F R
Sbjct: 123 AELAISTFWPNFYQVIFEVITSGHQGYLAIDEVKVLGH------PCTRTPHFLRIQN--- 173
Query: 128 KYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPD---------- 177
++ G+ A F C G V G V D
Sbjct: 174 ----------------VEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTS 217
Query: 178 --HNEPVFRIDSVRKEDKGMYQCVIRNEQESAQAS 210
F + + K D G Y+C+IR E ++
Sbjct: 218 SRRFIASFNVVNTTKRDAGKYRCMIRTEGGVGISN 252
Score = 35.9 bits (82), Expect = 0.011
Identities = 17/95 (17%), Positives = 30/95 (31%), Gaps = 7/95 (7%)
Query: 30 GESFALLCEAQEN--MWFKFIEGSSRKVAVPLNDR----VKQVSGTLIIKEAKVEDSGKY 83
G+ C A + PL + ++ + + D+GKY
Sbjct: 179 GQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFIASFNVVNTTKRDAGKY 238
Query: 84 LCVVNNSVG-GESVETVLTVTAPLAAGVEPTVQTI 117
C++ G G S L V P P + ++
Sbjct: 239 RCMIRTEGGVGISNYAELVVKEPPVPIAPPQLASV 273
>3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3;
structural genomics, joint center for struct genomics,
JCSG; HET: MLY MSE; 1.70A {Mus musculus}
Length = 112
Score = 55.1 bits (132), Expect = 4e-10
Identities = 24/105 (22%), Positives = 37/105 (35%), Gaps = 21/105 (20%)
Query: 125 FTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEGNP--VKTISWMKDGKPVPDHNEPV 182
F C P + V+P Q+ G FTC + T +W D + + D
Sbjct: 3 FVCDDFPXPQIT--VQPETQSAIXGSDVSFTCSAASSSDSPMTFAWXXDNEALQDAEMEN 60
Query: 183 F-----------------RIDSVRKEDKGMYQCVIRNEQESAQAS 210
+ R+ +V +G YQCVI N S+ +
Sbjct: 61 YAHLRAQGGELMEYTTILRLRNVEFTSEGXYQCVISNHFGSSYSV 105
Score = 40.1 bits (93), Expect = 8e-05
Identities = 12/50 (24%), Positives = 21/50 (42%), Gaps = 2/50 (4%)
Query: 219 FDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEIS--WYLDGKKLVNAE 266
F P I ++ G + F C A+ + ++ W D + L +AE
Sbjct: 8 FPXPQITVQPETQSAIXGSDVSFTCSAASSSDSPMTFAWXXDNEALQDAE 57
Score = 38.9 bits (90), Expect = 3e-04
Identities = 16/87 (18%), Positives = 31/87 (35%), Gaps = 14/87 (16%)
Query: 30 GESFALLCEAQ-------ENMWF---KFIEGSSRKVAVPL---NDRVKQVSGTLIIKEAK 76
G + C A W + ++ + + L + + + L ++ +
Sbjct: 25 GSDVSFTCSAASSSDSPMTFAWXXDNEALQDAEMENYAHLRAQGGELMEYTTILRLRNVE 84
Query: 77 VEDSGKYLCVVNNSVG-GESVETVLTV 102
G Y CV++N G SV LT+
Sbjct: 85 FTSEGXYQCVISNHFGSSYSVXAXLTI 111
>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac
muscle, hypertrophic cardiomyopathy, actin-binding, cell
adhesion, disease mutation; NMR {Homo sapiens}
Length = 95
Score = 53.9 bits (130), Expect = 6e-10
Identities = 16/85 (18%), Positives = 28/85 (32%), Gaps = 10/85 (11%)
Query: 133 PPLAAGVEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVP---------DHNEPVF 183
P A +P + G PA F + E VK + W + G + +
Sbjct: 7 PVSAFSKKPRSVEVAAGSPAVFEAETERAGVK-VRWQRGGSDISASNKYGLATEGTRHTL 65
Query: 184 RIDSVRKEDKGMYQCVIRNEQESAQ 208
+ V D+G Y + + +
Sbjct: 66 TVREVGPADQGSYAVIAGSSKVKFD 90
Score = 37.7 bits (88), Expect = 4e-04
Identities = 14/82 (17%), Positives = 25/82 (30%), Gaps = 18/82 (21%)
Query: 30 GESFALLCEAQEN----MWFKFIEGSSRKVAVPLNDRVKQVSG----TLIIKEAKVEDSG 81
G E + W + G + +++ + TL ++E D G
Sbjct: 23 GSPAVFEAETERAGVKVRWQR--GG----SDISASNKYGLATEGTRHTLTVREVGPADQG 76
Query: 82 KYLCVVNNSVGGESVETVLTVT 103
Y + G V+ L V
Sbjct: 77 SYAVI----AGSSKVKFDLKVI 94
Score = 33.5 bits (77), Expect = 0.012
Identities = 4/47 (8%), Positives = 12/47 (25%), Gaps = 1/47 (2%)
Query: 221 PPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNAER 267
+ + G F+ ++ W G + + +
Sbjct: 8 VSAFSKKPRSVEVAAGSPAVFEAETER-AGVKVRWQRGGSDISASNK 53
>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding
domain of CD48, immune system; HET: NAG; 2.60A {Rattus
norvegicus}
Length = 180
Score = 56.1 bits (135), Expect = 7e-10
Identities = 22/191 (11%), Positives = 44/191 (23%), Gaps = 54/191 (28%)
Query: 30 GESFALLCEAQEN------MWFK---------FIEGSSRKVAVPLNDRVK--QVSGTLII 72
G + L W F G DRV + +G L I
Sbjct: 14 GSNVTLTILKHPLASYQRLTWLHTTNQKILEYFPNGKKTVFESVFKDRVDLDKTNGALRI 73
Query: 73 KEAKVEDSGKYLCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEIS 132
ED G Y + + + + + V ++ +P + C
Sbjct: 74 YNVSKEDRGDYYMRMLHETEDQW-KITMEVYEMVS---KPMIYW---------ECSNAT- 119
Query: 133 PPLAAGVEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNEPVFRIDSVRKED 192
TC+ + + + + + +
Sbjct: 120 ---------------------LTCEVLEGTDVELKLYQGKEHLRSLRQKT--MSYQWTNL 156
Query: 193 KGMYQCVIRNE 203
+ ++C N
Sbjct: 157 RAPFKCKAVNR 167
Score = 52.2 bits (125), Expect = 2e-08
Identities = 24/121 (19%), Positives = 40/121 (33%), Gaps = 20/121 (16%)
Query: 158 YEGNPVKTISWMKDGKPVP-----------DHNEPVFRIDSVRKEDKGMYQCVIRNEQES 206
K + + +GK D RI +V KED+G Y + +E E
Sbjct: 35 LHTTNQKILEYFPNGKKTVFESVFKDRVDLDKTNGALRIYNVSKEDRGDYYMRMLHETED 94
Query: 207 AQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNAE 266
Q +++ P+I S+ TL C E+ Y + L +
Sbjct: 95 -QWKITMEVYEMVSKPMIYWECSNATLT--------CEVLEGTDVELKLYQGKEHLRSLR 145
Query: 267 R 267
+
Sbjct: 146 Q 146
Score = 36.4 bits (84), Expect = 0.004
Identities = 11/81 (13%), Positives = 18/81 (22%), Gaps = 20/81 (24%)
Query: 30 GESFALLCEAQEN-----MWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYL 84
+ L CE E ++ + + +
Sbjct: 115 CSNATLTCEVLEGTDVELKLYQ-------------GKEHLRSLRQKTMSYQWTNLRAPFK 161
Query: 85 CVVNNSVGGESVETVLTVTAP 105
C N V ES + V P
Sbjct: 162 CKAVNRVSQES--EMEVVNCP 180
>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 103
Score = 53.8 bits (130), Expect = 9e-10
Identities = 13/74 (17%), Positives = 25/74 (33%), Gaps = 10/74 (13%)
Query: 144 QTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVP---------DHNEPVFRIDSVRKEDKG 194
Q + G + C+ + W+KD K + + + I +D G
Sbjct: 18 QWVAPGEDVELRCELSRAGT-PVHWLKDRKAIRKSQKYDVVCEGTMAMLVIRGASLKDAG 76
Query: 195 MYQCVIRNEQESAQ 208
Y C + + +A
Sbjct: 77 EYTCEVEASKSTAS 90
Score = 44.2 bits (105), Expect = 3e-06
Identities = 20/87 (22%), Positives = 31/87 (35%), Gaps = 18/87 (20%)
Query: 30 GESFALLCEAQEN----MWFKFIEGSSRKVAVPLNDRVKQVSG----TLIIKEAKVEDSG 81
GE L CE W K + A+ + + V L+I+ A ++D+G
Sbjct: 23 GEDVELRCELSRAGTPVHWLKD------RKAIRKSQKYDVVCEGTMAMLVIRGASLKDAG 76
Query: 82 KYLCVVNNSVGGESVETVLTVTAPLAA 108
+Y C V S L V +
Sbjct: 77 EYTCEVEASKS----TASLHVEEKASG 99
Score = 38.4 bits (90), Expect = 3e-04
Identities = 12/47 (25%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Query: 221 PPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNAER 267
P I + D+ + PG + +C S TP + W D K + +++
Sbjct: 8 PAAIIKPLEDQWVAPGEDVELRCELSRAGTP-VHWLKDRKAIRKSQK 53
>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 104
Score = 53.9 bits (130), Expect = 9e-10
Identities = 11/79 (13%), Positives = 17/79 (21%), Gaps = 10/79 (12%)
Query: 140 EPTVQTIDFGRPAQFTCK-YEGNPVKTISWMKDGKPVP---------DHNEPVFRIDSVR 189
+ G F C + W GK V + + +
Sbjct: 14 RLKTMEVLEGESCSFECVLSHESASDPAMWTVGGKTVGSSSRFQATRQGRKYILVVREAA 73
Query: 190 KEDKGMYQCVIRNEQESAQ 208
D G +R A
Sbjct: 74 PSDAGEVVFSVRGLTSKAS 92
Score = 38.9 bits (91), Expect = 2e-04
Identities = 8/48 (16%), Positives = 20/48 (41%), Gaps = 1/48 (2%)
Query: 221 PPVIKESFSDETLNPGPNYYFKC-IASGNPTPEISWYLDGKKLVNAER 267
I + + G + F+C ++ + + W + GK + ++ R
Sbjct: 8 HVGITKRLKTMEVLEGESCSFECVLSHESASDPAMWTVGGKTVGSSSR 55
Score = 37.0 bits (86), Expect = 8e-04
Identities = 18/86 (20%), Positives = 29/86 (33%), Gaps = 20/86 (23%)
Query: 30 GESFALLCEAQEN------MWFKFIEGSSRKVAVPLNDRVKQVS----GTLIIKEAKVED 79
GES + C MW G V + R + L+++EA D
Sbjct: 23 GESCSFECVLSHESASDPAMWTV--GG----KTVGSSSRFQATRQGRKYILVVREAAPSD 76
Query: 80 SGKYLCVVNNSVGGESVETVLTVTAP 105
+G+ + V G + + L V
Sbjct: 77 AGEVVFS----VRGLTSKASLIVRER 98
>1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2;
IG domain, structural protein; NMR {Homo sapiens} SCOP:
b.1.1.4
Length = 104
Score = 53.5 bits (129), Expect = 1e-09
Identities = 14/89 (15%), Positives = 26/89 (29%), Gaps = 11/89 (12%)
Query: 130 EISPPLAAGVEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNEPVF------ 183
E + G + T + + + W+K+G+ +
Sbjct: 12 EKKSTAFQKKLEPAYQVSKGHKIRLTVEL-ADHDAEVKWLKNGQEIQMSGSKYIFESIGA 70
Query: 184 ----RIDSVRKEDKGMYQCVIRNEQESAQ 208
I D YQCV+ E+ S +
Sbjct: 71 KRTLTISQCSLADDAAYQCVVGGEKCSTE 99
Score = 40.0 bits (94), Expect = 9e-05
Identities = 19/63 (30%), Positives = 23/63 (36%), Gaps = 11/63 (17%)
Query: 44 WFKF---IEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYLCVVNNSVGGESVETVL 100
W K I+ S K + TL I + + D Y CV VGGE T L
Sbjct: 49 WLKNGQEIQMSGSKYIFESIGAKR----TLTISQCSLADDAAYQCV----VGGEKCSTEL 100
Query: 101 TVT 103
V
Sbjct: 101 FVK 103
Score = 30.8 bits (70), Expect = 0.13
Identities = 4/48 (8%), Positives = 16/48 (33%), Gaps = 2/48 (4%)
Query: 221 PPVIKESFSD-ETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNAER 267
++ ++ G + + E+ W +G+++ +
Sbjct: 15 STAFQKKLEPAYQVSKGHKIRLTVELA-DHDAEVKWLKNGQEIQMSGS 61
>1he7_A High affinity nerve growth factor receptor; transferase,
TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP:
b.1.1.4 PDB: 1wwa_X 1www_X
Length = 126
Score = 53.8 bits (129), Expect = 2e-09
Identities = 15/103 (14%), Positives = 28/103 (27%), Gaps = 22/103 (21%)
Query: 141 PTVQTIDFGRPAQFTC---KYEGNPVKTISWMKDGKPVPDHN----------------EP 181
P + C +G P ++ W+ +G + + +
Sbjct: 4 PASVQLHTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHG 63
Query: 182 VFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLGGRFDPPVI 224
R++ + G Y + N A AS D P
Sbjct: 64 CLRLNQPTHVNNGNYTLLAANPFGQASASIMAAF---MDNPFE 103
Score = 38.4 bits (89), Expect = 4e-04
Identities = 10/67 (14%), Positives = 18/67 (26%), Gaps = 5/67 (7%)
Query: 44 WFK---FIEGSSRKVAVPLND--RVKQVSGTLIIKEAKVEDSGKYLCVVNNSVGGESVET 98
W + +S L G L + + ++G Y + N G S
Sbjct: 34 WLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQASASI 93
Query: 99 VLTVTAP 105
+
Sbjct: 94 MAAFMDN 100
Score = 38.4 bits (89), Expect = 5e-04
Identities = 10/50 (20%), Positives = 15/50 (30%), Gaps = 9/50 (18%)
Query: 221 PPVIKESFSDETLNPGPNYYFKCIA---SGNPTPEISWYLDGKKLVNAER 267
P + L+ + CI G P P + W +G L
Sbjct: 3 MPASVQ------LHTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSF 46
>2edh_A Obscurin; structural genomics, NPPSFA, national project on P
structural and functional analyses, riken structural
genomics/proteomics initiative; NMR {Homo sapiens}
Length = 113
Score = 53.1 bits (128), Expect = 2e-09
Identities = 23/129 (17%), Positives = 35/129 (27%), Gaps = 39/129 (30%)
Query: 89 NSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDF 148
+S +LTV A P +FT +
Sbjct: 2 SSGSSGRTSAMLTVRAL----------------PIKFT------------EGLRNEEATE 33
Query: 149 GRPAQFTCKYEGNPVKTISWMKDGKPVP---------DHNEPVFRIDSVRKEDKGMYQCV 199
G A C+ + W K + + D +I + ED G Y C+
Sbjct: 34 GATAVLRCELSKMA--PVEWWKGHETLRDGDRHSLRQDGARCELQIRGLVAEDAGEYLCM 91
Query: 200 IRNEQESAQ 208
E+ SA
Sbjct: 92 CGKERTSAM 100
Score = 41.6 bits (98), Expect = 2e-05
Identities = 22/83 (26%), Positives = 31/83 (37%), Gaps = 17/83 (20%)
Query: 30 GESFALLCEAQEN---MWFKFIEGSSRKVAVPLNDRVKQVS----GTLIIKEAKVEDSGK 82
G + L CE + W+K + DR L I+ ED+G+
Sbjct: 34 GATAVLRCELSKMAPVEWWKG------HETLRDGDRHSLRQDGARCELQIRGLVAEDAGE 87
Query: 83 YLCVVNNSVGGESVETVLTVTAP 105
YLC+ G E +LTV A
Sbjct: 88 YLCM----CGKERTSAMLTVRAM 106
Score = 39.3 bits (92), Expect = 2e-04
Identities = 12/66 (18%), Positives = 22/66 (33%), Gaps = 4/66 (6%)
Query: 202 NEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKK 261
+ S + S L + P E +E G +C S + W+ +
Sbjct: 2 SSGSSGRTSAMLTVRAL--PIKFTEGLRNEEATEGATAVLRCELSKMA--PVEWWKGHET 57
Query: 262 LVNAER 267
L + +R
Sbjct: 58 LRDGDR 63
>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW-
type/skeletal muscle SLOW-isoform, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4
Length = 103
Score = 52.7 bits (127), Expect = 2e-09
Identities = 15/88 (17%), Positives = 28/88 (31%), Gaps = 12/88 (13%)
Query: 132 SPPLAAGVEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNEPVFR------- 184
S + + T G + C+ + W K+G+ + + +R
Sbjct: 5 SSGIMVTKQLEDTTAYCGERVELECEV-SEDDANVKWFKNGEEIIPGPKSRYRIRVEGKK 63
Query: 185 ----IDSVRKEDKGMYQCVIRNEQESAQ 208
I+ K D Y + Q SA+
Sbjct: 64 HILIIEGATKADAAEYSVMTTGGQSSAK 91
Score = 38.5 bits (90), Expect = 2e-04
Identities = 19/84 (22%), Positives = 29/84 (34%), Gaps = 16/84 (19%)
Query: 30 GESFALLCEAQEN----MWFK----FIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSG 81
GE L CE E+ WFK I G + + + + LII+ A D+
Sbjct: 22 GERVELECEVSEDDANVKWFKNGEEIIPGPKSRYRIRVEGKKH----ILIIEGATKADAA 77
Query: 82 KYLCVVNNSVGGESVETVLTVTAP 105
+Y + L+V
Sbjct: 78 EYSVMTTG----GQSSAKLSVDLK 97
Score = 34.6 bits (80), Expect = 0.006
Identities = 7/47 (14%), Positives = 19/47 (40%), Gaps = 1/47 (2%)
Query: 221 PPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNAER 267
++ + D T G +C S + W+ +G++++ +
Sbjct: 7 GIMVTKQLEDTTAYCGERVELECEVS-EDDANVKWFKNGEEIIPGPK 52
>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.1.4
Length = 126
Score = 53.1 bits (127), Expect = 3e-09
Identities = 15/96 (15%), Positives = 27/96 (28%), Gaps = 21/96 (21%)
Query: 140 EPTVQTIDFGRPAQFTCKYEGNPVK---TISWMKDGKPVPDHNEP--------------- 181
+P T+ G F K + + TI W K
Sbjct: 13 KPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHSRV 72
Query: 182 ---VFRIDSVRKEDKGMYQCVIRNEQESAQASGELK 214
+I + G Y+C + + + S +L+
Sbjct: 73 YTFEMQIIKAKDNFAGNYRCEVTYKDKFDSCSFDLE 108
Score = 45.0 bits (106), Expect = 2e-06
Identities = 14/69 (20%), Positives = 22/69 (31%), Gaps = 7/69 (10%)
Query: 44 WFK-------FIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYLCVVNNSVGGESV 96
WFK G ++ + + + I +AK +G Y C V +S
Sbjct: 44 WFKGKWMDLASKAGKHLQLKETFERHSRVYTFEMQIIKAKDNFAGNYRCEVTYKDKFDSC 103
Query: 97 ETVLTVTAP 105
L V
Sbjct: 104 SFDLEVHES 112
Score = 27.6 bits (61), Expect = 2.3
Identities = 7/40 (17%), Positives = 11/40 (27%), Gaps = 3/40 (7%)
Query: 220 DPPVIKESFSDETLNPGPNYYFKCIASGNP---TPEISWY 256
+ E T+ G + F P I W+
Sbjct: 6 SGILFIEKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWF 45
>3cx2_A Myosin-binding protein C, cardiac-type; protonation states,
actin-binding, cardiomyopathy, cell adhesion, disease
mutation, immunoglobulin domain; 1.30A {Homo sapiens}
PDB: 2v6h_A 2avg_A
Length = 108
Score = 52.7 bits (126), Expect = 3e-09
Identities = 11/96 (11%), Positives = 23/96 (23%), Gaps = 21/96 (21%)
Query: 140 EPTVQTIDFGRPAQFTCKYEGNPVK---TISWMKD------------------GKPVPDH 178
P + G F+ + G + + W K
Sbjct: 10 RPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRASKV 69
Query: 179 NEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELK 214
I + G Y+C + + + ++ L
Sbjct: 70 YLFELHITDAQPAFTGSYRCEVSTKDKFDCSNFNLT 105
Score = 43.1 bits (101), Expect = 8e-06
Identities = 15/67 (22%), Positives = 23/67 (34%), Gaps = 7/67 (10%)
Query: 44 WFK-------FIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYLCVVNNSVGGESV 96
WFK G ++ + K L I +A+ +G Y C V+ +
Sbjct: 41 WFKGKWVDLSSKVGQHLQLHDSYDRASKVYLFELHITDAQPAFTGSYRCEVSTKDKFDCS 100
Query: 97 ETVLTVT 103
LTV
Sbjct: 101 NFNLTVH 107
>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF
receptor, cancer, immune system-transfer complex; HET:
NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X
Length = 122
Score = 52.4 bits (125), Expect = 4e-09
Identities = 17/89 (19%), Positives = 29/89 (32%), Gaps = 13/89 (14%)
Query: 30 GESFALLCEAQ-------ENMWFK------FIEGSSRKVAVPLNDRVKQVSGTLIIKEAK 76
GE L C A+ + W + +R + +K+ TL I
Sbjct: 23 GEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVT 82
Query: 77 VEDSGKYLCVVNNSVGGESVETVLTVTAP 105
D G Y C ++ + + T + V
Sbjct: 83 RSDQGLYTCAASSGLMTKKNSTFVRVHEK 111
Score = 43.6 bits (102), Expect = 6e-06
Identities = 13/103 (12%), Positives = 26/103 (25%), Gaps = 22/103 (21%)
Query: 141 PTVQTIDFGRPAQFTCKYEG--NPVKTISWMKDGKPVPDHNEP----------------- 181
+ G C N +W
Sbjct: 15 SHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLS 74
Query: 182 VFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLGGRFDPPVI 224
ID V + D+G+Y C + + + S +++ + P +
Sbjct: 75 TLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRV---HEKPFV 114
Score = 25.9 bits (56), Expect = 9.0
Identities = 6/37 (16%), Positives = 11/37 (29%), Gaps = 2/37 (5%)
Query: 232 TLNPGPNYYFKCIASGNPTP--EISWYLDGKKLVNAE 266
L+ G C A + +W K + +
Sbjct: 19 ELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKK 55
>1gxe_A Myosin binding protein C, cardiac-type; cytoskeleton, muscle, IGI,
thick filament, immunoglobulin domain; NMR {Homo
sapiens} SCOP: b.1.1.4
Length = 139
Score = 52.8 bits (126), Expect = 4e-09
Identities = 16/112 (14%), Positives = 29/112 (25%), Gaps = 38/112 (33%)
Query: 141 PTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNEP------------------- 181
P + G + G+P T+ W K
Sbjct: 25 PDTIVVVAGNKLRLDVPISGDPAPTVIWQKAITQGNKAPARPAPDAPEDTGDSDEWVFDK 84
Query: 182 -------------------VFRIDSVRKEDKGMYQCVIRNEQESAQASGELK 214
+F ++ KED+G+Y ++N Q + +K
Sbjct: 85 KLLCETEGRVRVETTKDRSIFTVEGAEKEDEGVYTVTVKNPVGEDQVNLTVK 136
Score = 45.5 bits (107), Expect = 2e-06
Identities = 16/82 (19%), Positives = 28/82 (34%), Gaps = 4/82 (4%)
Query: 26 KKPGGESFALLCEAQENMWFKFIEGSSRKVAVPLNDRVKQVSG----TLIIKEAKVEDSG 81
+ +A E+ +K+ RV+ + ++ A+ ED G
Sbjct: 57 TQGNKAPARPAPDAPEDTGDSDEWVFDKKLLCETEGRVRVETTKDRSIFTVEGAEKEDEG 116
Query: 82 KYLCVVNNSVGGESVETVLTVT 103
Y V N VG + V + V
Sbjct: 117 VYTVTVKNPVGEDQVNLTVKVI 138
Score = 35.1 bits (80), Expect = 0.007
Identities = 11/55 (20%), Positives = 16/55 (29%), Gaps = 5/55 (9%)
Query: 218 RFDPPVIKESFSDETLNP-----GPNYYFKCIASGNPTPEISWYLDGKKLVNAER 267
R +PP I + G SG+P P + W + A
Sbjct: 10 RQEPPKIHLDCPGRIPDTIVVVAGNKLRLDVPISGDPAPTVIWQKAITQGNKAPA 64
>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton,
immunoglobulin domain, muscle protein, phosphorylation,
repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A
1tiu_A 2rq8_A
Length = 93
Score = 51.1 bits (123), Expect = 6e-09
Identities = 11/74 (14%), Positives = 22/74 (29%), Gaps = 10/74 (13%)
Query: 144 QTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVP---------DHNEPVFRIDSVRKEDKG 194
+ G A F + P W G+P+ D + + + + + G
Sbjct: 15 VEVFVGETAHFEIEL-SEPDVHGQWKLKGQPLAASPDCEIIEDGKKHILILHNCQLGMTG 73
Query: 195 MYQCVIRNEQESAQ 208
N + +A
Sbjct: 74 EVSFQAANTKSAAN 87
Score = 36.5 bits (85), Expect = 0.001
Identities = 6/36 (16%), Positives = 12/36 (33%), Gaps = 4/36 (11%)
Query: 69 TLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTVTA 104
LI+ ++ +G+ N+ L V
Sbjct: 61 ILILHNCQLGMTGEVSFQAANT----KSAANLKVKE 92
Score = 35.0 bits (81), Expect = 0.004
Identities = 8/47 (17%), Positives = 16/47 (34%), Gaps = 1/47 (2%)
Query: 221 PPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNAER 267
+++ + G +F+ S P W L G+ L +
Sbjct: 5 LIEVEKPLYGVEVFVGETAHFEIELS-EPDVHGQWKLKGQPLAASPD 50
>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily,
immune system; HET: NAG; 3.00A {Homo sapiens} SCOP:
b.1.1.1 b.1.1.3 PDB: 1i8l_A*
Length = 201
Score = 53.5 bits (128), Expect = 7e-09
Identities = 31/144 (21%), Positives = 50/144 (34%), Gaps = 34/144 (23%)
Query: 149 GRPAQFTCKYEGNPVKT----ISWMKDGKPV------PDHNEPVF--------------R 184
A +C + + + I W K+ K V + P +
Sbjct: 9 KEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDITNNLSIV 68
Query: 185 IDSVRKEDKGMYQCVIRN-----EQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNY 239
I ++R D+G Y+CV+ + A L + F P I SD +
Sbjct: 69 ILALRPSDEGTYECVVLKYEKDAFKREHLAEVTLSVKADFPTPSI----SDFEIPTSNIR 124
Query: 240 YFKCIASG-NPTPEISWYLDGKKL 262
C SG P P +SW +G++L
Sbjct: 125 RIICSTSGGFPEPHLSWLENGEEL 148
Score = 46.9 bits (111), Expect = 1e-06
Identities = 22/147 (14%), Positives = 39/147 (26%), Gaps = 37/147 (25%)
Query: 69 TLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCK 128
+++I + D G Y CVV L PT
Sbjct: 66 SIVILALRPSDEGTYECVVLKYEKDAFKREHLAEVTLSVKADFPT--------------- 110
Query: 129 YEISPPLAAGVEPTVQTIDFGRPAQFTCK-YEGNPVKTISWMKDGKPVPDHNEPV----- 182
+ I + C G P +SW+++G+ + N V
Sbjct: 111 ----------PSISDFEIPTSNIRRIICSTSGGFPEPHLSWLENGEELNAINTTVSQDPE 160
Query: 183 ---FRIDS---VRKEDKGMYQCVIRNE 203
+ + S + C+I+
Sbjct: 161 TELYAVSSKLDFNMTTNHSFMCLIKYG 187
Score = 28.8 bits (64), Expect = 1.3
Identities = 8/79 (10%), Positives = 22/79 (27%), Gaps = 12/79 (15%)
Query: 28 PGGESFALLCEAQEN------MWFK---FIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVE 78
P ++C W + + + V+ + VS L +
Sbjct: 119 PTSNIRRIICSTSGGFPEPHLSWLENGEELNAINTTVSQDPETELYAVSSKLDFN---MT 175
Query: 79 DSGKYLCVVNNSVGGESVE 97
+ ++C++ +
Sbjct: 176 TNHSFMCLIKYGHLRVNQT 194
>2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498;
beta-sandwich, IG-fold, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 102
Score = 51.3 bits (123), Expect = 9e-09
Identities = 13/74 (17%), Positives = 24/74 (32%), Gaps = 10/74 (13%)
Query: 144 QTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVP---------DHNEPVFRIDSVRKEDKG 194
+ G A +C+ ++W KDGK + + + + G
Sbjct: 21 VQAEAGASATLSCEV-AQAQTEVTWYKDGKKLSSSSKVRVEAVGCTRRLVVQQAGQAEAG 79
Query: 195 MYQCVIRNEQESAQ 208
Y C +Q S +
Sbjct: 80 EYSCEAGGQQLSFR 93
Score = 39.7 bits (93), Expect = 1e-04
Identities = 18/83 (21%), Positives = 35/83 (42%), Gaps = 18/83 (21%)
Query: 30 GESFALLCEAQEN----MWFKFIEGSSRKVAVPLNDRVKQVSG----TLIIKEAKVEDSG 81
G S L CE + W+K +G + + +V+ + L++++A ++G
Sbjct: 26 GASATLSCEVAQAQTEVTWYK--DG----KKLSSSSKVRVEAVGCTRRLVVQQAGQAEAG 79
Query: 82 KYLCVVNNSVGGESVETVLTVTA 104
+Y C GG+ + L V
Sbjct: 80 EYSCE----AGGQQLSFRLQVAG 98
Score = 35.8 bits (83), Expect = 0.002
Identities = 12/57 (21%), Positives = 23/57 (40%), Gaps = 1/57 (1%)
Query: 211 GELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNAER 267
G G+ + + + G + C + E++WY DGKKL ++ +
Sbjct: 1 GSSGSSGKVVFAKEQPAHREVQAEAGASATLSCEVA-QAQTEVTWYKDGKKLSSSSK 56
>3eow_R Poliovirus receptor; immunoglobulin super family, alternative
splicing, cell adhesion, cell membrane, glycoprotein,
HOST-virus interaction; 3.50A {Homo sapiens} PDB: 3uro_R
3epc_R* 3epd_R* 3epf_R*
Length = 221
Score = 53.2 bits (127), Expect = 1e-08
Identities = 25/163 (15%), Positives = 47/163 (28%), Gaps = 38/163 (23%)
Query: 139 VEPTVQTIDFGRPAQFTCKYEGNP-----VKTISWMKDGKPVP----------------- 176
V G C + V ++W + G+
Sbjct: 5 APTQVPGF-LGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKR 63
Query: 177 ----------DHNEPVFRIDSVRKEDKGMYQC-VIRNEQESAQASGELKLGGRFDPPVIK 225
+ + R+ +R ED+G Y C + Q S L++ P
Sbjct: 64 LEFVAARLGAELRDASLRMFGLRVEDEGSYTCLFVTFPQGSRSVDIWLRVLA---KPQNT 120
Query: 226 ESFSDETLNPGPNYYFKCIASG-NPTPEISWYLDGKKLVNAER 267
L P +C+++G P +I+W+ D + +
Sbjct: 121 AEVQKVQLTGEPVPMARCVSTGGRPPAQITWHSDLGGMPQTSQ 163
Score = 48.5 bits (115), Expect = 4e-07
Identities = 28/190 (14%), Positives = 47/190 (24%), Gaps = 41/190 (21%)
Query: 48 IEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYLCVVNNS-VGGESVETVLTVTAPL 106
S R V + +L + +VED G Y C+ G SV+ L V A
Sbjct: 58 YSESKRLEFVAARLGAELRDASLRMFGLRVEDEGSYTCLFVTFPQGSRSVDIWLRVLAKP 117
Query: 107 AAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEGNPVKTI 166
E + C G P I
Sbjct: 118 QNTAEVQKVQLTGEPVPMARC----------------------------VSTGGRPPAQI 149
Query: 167 SWMKDGKPVPDHNEP------------VFRIDSVRKEDKGMYQCVIRNEQESAQASGELK 214
+W D +P ++ ++ + + D C + +E +
Sbjct: 150 TWHSDLGGMPQTSQVPGFLSGTVTVTSLWILVPSSQVDGKQVTCKVEHESFEKPQLLTVS 209
Query: 215 LGGRFDPPVI 224
L +
Sbjct: 210 LTVYYPHHHH 219
>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 104
Score = 50.9 bits (122), Expect = 1e-08
Identities = 12/78 (15%), Positives = 23/78 (29%), Gaps = 10/78 (12%)
Query: 140 EPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNEPVFR---------IDSVRK 190
+ T TC+ +W KDG+ V + V + + +
Sbjct: 16 DKVSLTFTTSERVVLTCELSRVDF-PATWYKDGQKVEESELLVVKMDGRKHRLILPEAKV 74
Query: 191 EDKGMYQCVIRNEQESAQ 208
+D G ++C
Sbjct: 75 QDSGEFECRTEGVSAFFG 92
Score = 43.5 bits (103), Expect = 4e-06
Identities = 23/84 (27%), Positives = 33/84 (39%), Gaps = 18/84 (21%)
Query: 30 GESFALLCEAQEN----MWFKFIEGSSRKVAVPLNDRVKQVSG----TLIIKEAKVEDSG 81
E L CE W+K +G V ++ + LI+ EAKV+DSG
Sbjct: 25 SERVVLTCELSRVDFPATWYK--DG----QKVEESELLVVKMDGRKHRLILPEAKVQDSG 78
Query: 82 KYLCVVNNSVGGESVETVLTVTAP 105
++ C G S +TV P
Sbjct: 79 EFECR----TEGVSAFFGVTVQDP 98
Score = 32.0 bits (73), Expect = 0.044
Identities = 11/49 (22%), Positives = 16/49 (32%), Gaps = 3/49 (6%)
Query: 221 PPVIK--ESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNAER 267
P I + T C S +WY DG+K+ +E
Sbjct: 8 PVHILSPQDKVSLTFTTSERVVLTCELSR-VDFPATWYKDGQKVEESEL 55
>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33;
2.40A {Caenorhabditis elegans} PDB: 1koa_A
Length = 573
Score = 54.1 bits (130), Expect = 1e-08
Identities = 18/86 (20%), Positives = 35/86 (40%), Gaps = 9/86 (10%)
Query: 138 GVEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVP---------DHNEPVFRIDSV 188
V+P + G+ A F C+ + ++W KD + + + N+ I+ V
Sbjct: 486 IVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNGNDYGLTINRV 545
Query: 189 RKEDKGMYQCVIRNEQESAQASGELK 214
+ +DKG Y +N + + L
Sbjct: 546 KGDDKGEYTVRAKNSYGTKEEIVFLN 571
Score = 39.8 bits (93), Expect = 7e-04
Identities = 12/35 (34%), Positives = 15/35 (42%)
Query: 69 TLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTVT 103
L I K +D G+Y NS G + L VT
Sbjct: 539 GLTINRVKGDDKGEYTVRAKNSYGTKEEIVFLNVT 573
Score = 36.7 bits (85), Expect = 0.006
Identities = 9/68 (13%), Positives = 23/68 (33%)
Query: 200 IRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDG 259
+R + + + P + G + F C + P ++W+ D
Sbjct: 461 LRKHRPQEYSIRDAFWDRSEAQPRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDD 520
Query: 260 KKLVNAER 267
++L + +
Sbjct: 521 RELKQSVK 528
>3bn3_B ICAM-5, intercellular adhesion molecule 5, telencephalin; I domain,
integrin, allosteric mobility, cell adhesi immune
system; HET: NAG; 2.10A {Homo sapiens}
Length = 196
Score = 52.4 bits (125), Expect = 2e-08
Identities = 18/132 (13%), Positives = 41/132 (31%), Gaps = 9/132 (6%)
Query: 139 VEPTVQTIDFGRPAQFTCKYEGNPVKTISW---MKDGKPVPDHNEPVFRIDSVRKEDKGM 195
++P V ++ G C + ++ ++ +R E +
Sbjct: 7 LQPRVAFVERGGSLWLNCSTNCPRPERGGLETSLRRNGTQRGLRWLARQLVDIR-EPETQ 65
Query: 196 YQCVIRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGN---PTPE 252
C R + + QA G ++ R D + G N+ C G +
Sbjct: 66 PVCFFRCARRTLQARGLIRTFQRPDRVEL--MPLPPWQPVGENFTLSCRVPGAGPRASLT 123
Query: 253 ISWYLDGKKLVN 264
++ ++L+
Sbjct: 124 LTLLRGAQELIR 135
Score = 33.5 bits (76), Expect = 0.037
Identities = 11/140 (7%), Positives = 31/140 (22%), Gaps = 42/140 (30%)
Query: 78 EDSGKYLCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAA 137
E + +C +++ + P
Sbjct: 61 EPETQPVCFFRC--ARRTLQARGLIRT--------------------------FQRPDRV 92
Query: 138 GVEPTVQTIDFGRPAQFTCKYEGN---PVKTISWMKDGK-----------PVPDHNEPVF 183
+ P G +C+ G T++ ++ + P
Sbjct: 93 ELMPLPPWQPVGENFTLSCRVPGAGPRASLTLTLLRGAQELIRRSFAGEPPRARGAVLTA 152
Query: 184 RIDSVRKEDKGMYQCVIRNE 203
+ + R++ + C +
Sbjct: 153 TVLARREDHGANFSCRAELD 172
Score = 33.1 bits (75), Expect = 0.058
Identities = 12/86 (13%), Positives = 24/86 (27%), Gaps = 8/86 (9%)
Query: 28 PGGESFALLCEAQEN--------MWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVED 79
P GE+F L C + + R+ R + T + + +
Sbjct: 102 PVGENFTLSCRVPGAGPRASLTLTLLRGAQELIRRSFAGEPPRARGAVLTATVLARREDH 161
Query: 80 SGKYLCVVNNSVGGESVETVLTVTAP 105
+ C + + +AP
Sbjct: 162 GANFSCRAELDLRPHGLGLFENSSAP 187
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein,
neurite growth regulation; HET: NAG BMA; 2.00A {Mus
musculus}
Length = 361
Score = 53.3 bits (128), Expect = 2e-08
Identities = 20/99 (20%), Positives = 35/99 (35%), Gaps = 8/99 (8%)
Query: 30 GESFALLCEA----QENMWFKFIEGSSRKVAVPLNDRVKQV-SGTLIIKEAKVEDSGKYL 84
G++ + C+ +W S+ +V ++ V +G L K+ +VED G Y
Sbjct: 261 GDTLTIRCDTKQQGMTKVWVSP---SNEQVLSQGSNGSVSVRNGDLFFKKVQVEDGGVYT 317
Query: 85 CVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPA 123
C E++ L V G T+
Sbjct: 318 CYAMGETFNETLSVELKVYNFTLHGHHDTLNAAADPWSH 356
Score = 52.5 bits (126), Expect = 4e-08
Identities = 16/121 (13%), Positives = 28/121 (23%), Gaps = 22/121 (18%)
Query: 140 EPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNEPVF--------RIDSVRKE 191
+ + G C + + + + V V+ E
Sbjct: 252 KESAWEAHLGDTLTIRCDTKQQGMTKVWVSPSNEQVLSQGSNGSVSVRNGDLFFKKVQVE 311
Query: 192 DKGMYQCVIRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTP 251
D G+Y C E + S ELK+ + A P
Sbjct: 312 DGGVYTCYAMGETFNETLSVELKVYNFTLHG--------------HHDTLNAAADPWSHP 357
Query: 252 E 252
+
Sbjct: 358 Q 358
Score = 37.1 bits (86), Expect = 0.004
Identities = 3/38 (7%), Positives = 12/38 (31%)
Query: 229 SDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNAE 266
S + G +C ++ +++++
Sbjct: 254 SAWEAHLGDTLTIRCDTKQQGMTKVWVSPSNEQVLSQG 291
>2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} PDB: 2yz8_A
Length = 103
Score = 50.0 bits (120), Expect = 2e-08
Identities = 11/78 (14%), Positives = 21/78 (26%), Gaps = 10/78 (12%)
Query: 140 EPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVP---------DHNEPVFRIDSVRK 190
+ G A C + W + + + ++R
Sbjct: 14 ALKDLEVLEGGAATLRCVLSSVAA-PVKWCYGNNVLRPGDKYSLRQEGAMLELVVRNLRP 72
Query: 191 EDKGMYQCVIRNEQESAQ 208
+D G Y C ++ SA
Sbjct: 73 QDSGRYSCSFGDQTTSAT 90
Score = 38.1 bits (89), Expect = 3e-04
Identities = 10/51 (19%), Positives = 18/51 (35%), Gaps = 1/51 (1%)
Query: 217 GRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNAER 267
G P +E+ D + G +C+ S P + W L ++
Sbjct: 4 GSSGPVRFQEALKDLEVLEGGAATLRCVLSSVAAP-VKWCYGNNVLRPGDK 53
Score = 36.9 bits (86), Expect = 0.001
Identities = 17/84 (20%), Positives = 28/84 (33%), Gaps = 18/84 (21%)
Query: 30 GESFALLCEAQEN----MWFKFIEGSSRKVAVPLNDRVKQVS----GTLIIKEAKVEDSG 81
G + L C W + D+ L+++ + +DSG
Sbjct: 23 GGAATLRCVLSSVAAPVKWCYG------NNVLRPGDKYSLRQEGAMLELVVRNLRPQDSG 76
Query: 82 KYLCVVNNSVGGESVETVLTVTAP 105
+Y C G ++ LTVTA
Sbjct: 77 RYSCS----FGDQTTSATLTVTAL 96
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse;
HET: NAG BMA MAN; 3.25A {Homo sapiens}
Length = 440
Score = 53.2 bits (128), Expect = 3e-08
Identities = 22/103 (21%), Positives = 34/103 (33%), Gaps = 16/103 (15%)
Query: 121 RPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNE 180
FTC P + G A+ C+ + ++SW+ V H
Sbjct: 333 DQNYFTC-----YAPVIVEPPADLNVTEGMAAELKCRAST-SLTSVSWITPNGTVMTHGA 386
Query: 181 PVFR----------IDSVRKEDKGMYQCVIRNEQESAQASGEL 213
R +V +D GMY C++ N + AS L
Sbjct: 387 YKVRIAVLSDGTLNFTNVTVQDTGMYTCMVSNSVGNTTASATL 429
Score = 48.2 bits (115), Expect = 1e-06
Identities = 23/82 (28%), Positives = 33/82 (40%), Gaps = 11/82 (13%)
Query: 30 GESFALLCEAQENM----WFKFIEGSSRKVAVP--LNDRVK-QVSGTLIIKEAKVEDSGK 82
G + L C A ++ W + V R+ GTL V+D+G
Sbjct: 356 GMAAELKCRASTSLTSVSWIT----PNGTVMTHGAYKVRIAVLSDGTLNFTNVTVQDTGM 411
Query: 83 YLCVVNNSVGGESVETVLTVTA 104
Y C+V+NSVG + L VT
Sbjct: 412 YTCMVSNSVGNTTASATLNVTG 433
Score = 37.8 bits (88), Expect = 0.002
Identities = 12/48 (25%), Positives = 17/48 (35%), Gaps = 1/48 (2%)
Query: 220 DPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNAER 267
PVI E +D + G KC AS +SW ++
Sbjct: 340 YAPVIVEPPADLNVTEGMAAELKCRAST-SLTSVSWITPNGTVMTHGA 386
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4
complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB:
3zyo_A* 3zyn_A* 2dl9_A
Length = 452
Score = 52.8 bits (127), Expect = 3e-08
Identities = 25/103 (24%), Positives = 36/103 (34%), Gaps = 17/103 (16%)
Query: 121 RPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNE 180
A F C S P P I GR A+ C+ P+ ++ W+ V H
Sbjct: 344 DQASFQC----SAPFIM-DAPRDLNISEGRMAELKCR--TPPMSSVKWLLPNGTVLSHAS 396
Query: 181 PVFR----------IDSVRKEDKGMYQCVIRNEQESAQASGEL 213
R V D G+Y C++ N ++ AS L
Sbjct: 397 RHPRISVLNDGTLNFSHVLLSDTGVYTCMVTNVAGNSNASAYL 439
Score = 50.5 bits (121), Expect = 2e-07
Identities = 17/77 (22%), Positives = 29/77 (37%), Gaps = 2/77 (2%)
Query: 30 GESFALLCEAQENMWFKFIEGSSRKVAVP-LNDRVK-QVSGTLIIKEAKVEDSGKYLCVV 87
G L C K++ + ++ + R+ GTL + D+G Y C+V
Sbjct: 367 GRMAELKCRTPPMSSVKWLLPNGTVLSHASRHPRISVLNDGTLNFSHVLLSDTGVYTCMV 426
Query: 88 NNSVGGESVETVLTVTA 104
N G + L V+
Sbjct: 427 TNVAGNSNASAYLNVST 443
Score = 37.4 bits (87), Expect = 0.003
Identities = 9/47 (19%), Positives = 17/47 (36%), Gaps = 2/47 (4%)
Query: 220 DPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNAE 266
P I ++ D ++ G KC P + W L +++
Sbjct: 351 SAPFIMDAPRDLNISEGRMAELKCRTP--PMSSVKWLLPNGTVLSHA 395
>2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} PDB: 2edl_A
2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A
Length = 108
Score = 49.3 bits (118), Expect = 4e-08
Identities = 17/102 (16%), Positives = 29/102 (28%), Gaps = 17/102 (16%)
Query: 140 EPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVP---------DHNEPVFRIDSVRK 190
+ + G A C E + V + W K + + D +I +
Sbjct: 14 DLKTKEASEGATATLQC--ELSKVAPVEWKKGPETLRDGGRYSLKQDGTRCELQIHDLSV 71
Query: 191 EDKGMYQCVIRNEQESAQASGELKLGGRFDPPVIKESFSDET 232
D G Y C+ + S L + P E +
Sbjct: 72 ADAGEYSCMCGQ----ERTSATLTVRAL--PARFTEGSGPSS 107
Score = 37.4 bits (87), Expect = 7e-04
Identities = 22/90 (24%), Positives = 29/90 (32%), Gaps = 17/90 (18%)
Query: 30 GESFALLCEAQEN---MWFKFIEGSSRKVAVPLNDRVKQVS----GTLIIKEAKVEDSGK 82
G + L CE + W K + R L I + V D+G+
Sbjct: 23 GATATLQCELSKVAPVEWKKG------PETLRDGGRYSLKQDGTRCELQIHDLSVADAGE 76
Query: 83 YLCVVNNSVGGESVETVLTVTAPLAAGVEP 112
Y C+ G E LTV A A E
Sbjct: 77 YSCM----CGQERTSATLTVRALPARFTEG 102
Score = 35.4 bits (82), Expect = 0.003
Identities = 7/47 (14%), Positives = 14/47 (29%), Gaps = 2/47 (4%)
Query: 221 PPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNAER 267
P + + + G +C S + W + L + R
Sbjct: 8 PARFTQDLKTKEASEGATATLQCELS--KVAPVEWKKGPETLRDGGR 52
>2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 103
Score = 49.3 bits (118), Expect = 4e-08
Identities = 23/93 (24%), Positives = 35/93 (37%), Gaps = 14/93 (15%)
Query: 140 EPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPV---------PDHNEPVFRIDSVRK 190
E T ++ A FTCK +P T++W K + + I ++ K
Sbjct: 14 ELTNLQVEEKGTAVFTCKT-EHPAATVTWRKGLLELRASGKHQPSQEGLTLRLTISALEK 72
Query: 191 EDKGMYQCVIRNEQESAQASGELKLGGRFDPPV 223
D Y C I AQ+ +L + GR P
Sbjct: 73 ADSDTYTCDI----GQAQSRAQLLVQGRRSGPS 101
Score = 36.2 bits (84), Expect = 0.002
Identities = 6/47 (12%), Positives = 15/47 (31%), Gaps = 1/47 (2%)
Query: 221 PPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNAER 267
E ++ + F C +P ++W +L + +
Sbjct: 8 ANCFTEELTNLQVEEKGTAVFTCKTE-HPAATVTWRKGLLELRASGK 53
Score = 34.6 bits (80), Expect = 0.007
Identities = 9/37 (24%), Positives = 11/37 (29%), Gaps = 4/37 (10%)
Query: 69 TLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTVTAP 105
L I + DS Y C +G L V
Sbjct: 64 RLTISALEKADSDTYTCD----IGQAQSRAQLLVQGR 96
>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A
{Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A*
1ow0_C*
Length = 218
Score = 51.0 bits (122), Expect = 6e-08
Identities = 27/190 (14%), Positives = 47/190 (24%), Gaps = 35/190 (18%)
Query: 30 GESFALLC----EAQENMWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYLC 85
S + C EA + R++ + +I +G+Y C
Sbjct: 23 DGSVKIQCQAIREAYLTQLMIIKNSTYREI-GRRLKFWNETDPEFVIDHMDANKAGRYQC 81
Query: 86 VVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQT 145
+ +E V + P L+A +
Sbjct: 82 QYRIGHY----------RFRYSDTLELVVTGLYG------------KPFLSADRGLVLMP 119
Query: 146 IDFGRPAQFTCKYEGNPVKTISWMKDGKPVPD-----HNEPVFRIDSVRKEDKGMYQCVI 200
G TC P S K+G+ + F + V G+Y+C
Sbjct: 120 ---GENISLTCSSAHIPFDRFSLAKEGELSLPQHQSGEHPANFSLGPVDLNVSGIYRCYG 176
Query: 201 RNEQESAQAS 210
+ S
Sbjct: 177 WYNRSPYLWS 186
Score = 49.9 bits (119), Expect = 1e-07
Identities = 26/128 (20%), Positives = 40/128 (31%), Gaps = 12/128 (9%)
Query: 144 QTIDFGRPAQFTCKYEGNPVKTI-SWMKDGKPVPDH--------NEPVFRIDSVRKEDKG 194
I + C+ T +K+ +P F ID + G
Sbjct: 18 PVIPLDGSVKIQCQAIREAYLTQLMIIKNSTYREIGRRLKFWNETDPEFVIDHMDANKAG 77
Query: 195 MYQCVIRNEQESAQASGELKL--GGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPE 252
YQC R + S L+L G + P + L PG N C ++ P
Sbjct: 78 RYQCQYRIGHYRFRYSDTLELVVTGLYGKPFLSADRG-LVLMPGENISLTCSSAHIPFDR 136
Query: 253 ISWYLDGK 260
S +G+
Sbjct: 137 FSLAKEGE 144
>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding
protein C, immunoglobulin domain, structural genomics,
NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A
Length = 100
Score = 48.5 bits (116), Expect = 7e-08
Identities = 15/86 (17%), Positives = 32/86 (37%), Gaps = 10/86 (11%)
Query: 132 SPPLAAGVEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNEPVFR------- 184
S A + +D G +F + +P + W K+G+ + + +F
Sbjct: 6 SGAAFAKILDPAYQVDKGGRVRFVVEL-ADPKLEVKWYKNGQEIRPSTKYIFEHKGCQRI 64
Query: 185 --IDSVRKEDKGMYQCVIRNEQESAQ 208
I++ + D Y +E+ S +
Sbjct: 65 LFINNCQMTDDSEYYVTAGDEKCSTE 90
Score = 40.1 bits (94), Expect = 7e-05
Identities = 10/41 (24%), Positives = 16/41 (39%), Gaps = 4/41 (9%)
Query: 69 TLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTVTAPLAAG 109
L I ++ D +Y G E T L V + ++G
Sbjct: 64 ILFINNCQMTDDSEYYVT----AGDEKCSTELFVRSGPSSG 100
Score = 33.9 bits (78), Expect = 0.011
Identities = 8/47 (17%), Positives = 19/47 (40%), Gaps = 1/47 (2%)
Query: 221 PPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNAER 267
K ++ G F + +P E+ WY +G+++ + +
Sbjct: 8 AAFAKILDPAYQVDKGGRVRFVVELA-DPKLEVKWYKNGQEIRPSTK 53
>3d85_D IL-12B, interleukin-12 subunit P40, cytotoxic lymphocyte; FAB,
immune system/cytokine complex; 1.90A {Homo sapiens}
SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB: 3d87_B* 3duh_A*
1f42_A* 1f45_A* 3hmx_A* 3qwr_A*
Length = 306
Score = 51.3 bits (121), Expect = 8e-08
Identities = 23/131 (17%), Positives = 35/131 (26%), Gaps = 7/131 (5%)
Query: 130 EISPPLAAGVEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNEPVFRIDSVR 189
E+ + VE G TC + I+W D + I
Sbjct: 3 ELKKDVYV-VELDWYPDAPGEMVVLTC--DTPEEDGITWTLDQSSEVLGSGKTLTIQVKE 59
Query: 190 KEDKGMYQCVIRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNP 249
D G Y C E S L L + + + + P + +C A
Sbjct: 60 FGDAGQYTCHKGGEVLSHS----LLLLHKKEDGIWSTDILKDQKEPKNKTFLRCEAKNYS 115
Query: 250 TPEISWYLDGK 260
W+L
Sbjct: 116 GRFTCWWLTTI 126
Score = 28.5 bits (62), Expect = 2.0
Identities = 9/43 (20%), Positives = 10/43 (23%), Gaps = 2/43 (4%)
Query: 221 PPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLV 263
V PG C I+W LD V
Sbjct: 6 KDVYVVELDWYPDAPGEMVVLTC--DTPEEDGITWTLDQSSEV 46
Score = 27.8 bits (60), Expect = 3.9
Identities = 20/118 (16%), Positives = 35/118 (29%), Gaps = 24/118 (20%)
Query: 30 GESFALLCEAQEN---MWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYLCV 86
GE L C+ E W + S V TL I+ + D+G+Y C
Sbjct: 21 GEMVVLTCDTPEEDGITWTL--DQS---------SEVLGSGKTLTIQVKEFGDAGQYTCH 69
Query: 87 VNNSVGGESVETVLTVTAPL----------AAGVEPTVQTIDFGRPAQFTCKYEISPP 134
V S+ + + + ++ +FTC + +
Sbjct: 70 KGGEVLSHSLLLLHKKEDGIWSTDILKDQKEPKNKTFLRCEAKNYSGRFTCWWLTTIS 127
>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune
system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A
4f8q_A
Length = 226
Score = 50.9 bits (121), Expect = 8e-08
Identities = 18/84 (21%), Positives = 32/84 (38%), Gaps = 6/84 (7%)
Query: 184 RIDSVRKEDKGMYQCVIRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKC 243
RI +V D G Y C ++ +A ELK+ + D + +C
Sbjct: 86 RIHNVTASDSGKYLCYFQDGDFYEKALVELKVAALGSDLHV-----DVKGYKDGGIHLEC 140
Query: 244 IASGN-PTPEISWYLDGKKLVNAE 266
++G P P+I W + + +
Sbjct: 141 RSTGWYPQPQIQWSNNKGENIPTV 164
Score = 48.9 bits (116), Expect = 3e-07
Identities = 29/167 (17%), Positives = 43/167 (25%), Gaps = 43/167 (25%)
Query: 69 TLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCK 128
L I DSGKYLC + E L V A
Sbjct: 84 ALRIHNVTASDSGKYLCYFQDGDFYEKALVELKVAAL----------------------- 120
Query: 129 YEISPPLAAGVEPTVQTIDFGRPAQFTCKYEGN-PVKTISWMKD-GKPVPDHNEPV---- 182
S I C+ G P I W + G+ +P PV
Sbjct: 121 --GSDLHVDVKGYKDGGI------HLECRSTGWYPQPQIQWSNNKGENIPTVEAPVVADG 172
Query: 183 ---FRIDS---VRKEDKGMYQCVIRNEQESAQASGELKLGGRFDPPV 223
+ + + +R C IR+ + + + + F
Sbjct: 173 VGLYAVAASVIMRGSSGEGVSCTIRSSLLGLEKTASISIADPFFRSA 219
Score = 38.9 bits (90), Expect = 7e-04
Identities = 11/93 (11%), Positives = 27/93 (29%), Gaps = 12/93 (12%)
Query: 23 IRFKKPGGESFALLCEAQEN------MWFKF---IEGSSRKVAVPLNDRVKQVSGTLIIK 73
+ K L C + W + V + V+ ++I++
Sbjct: 126 VDVKGYKDGGIHLECRSTGWYPQPQIQWSNNKGENIPTVEAPVVADGVGLYAVAASVIMR 185
Query: 74 EAKVEDSGKYLCVVNNSVGGESVETVLTVTAPL 106
+ C + +S+ G +++ P
Sbjct: 186 GS---SGEGVSCTIRSSLLGLEKTASISIADPF 215
>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor,
two-domain structure, V-SET, C2-SET, IG-like domain,
6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens}
PDB: 2zg3_A* 2zg2_A
Length = 214
Score = 50.6 bits (120), Expect = 8e-08
Identities = 30/197 (15%), Positives = 57/197 (28%), Gaps = 49/197 (24%)
Query: 43 MWFKFIEGSSRKVAVPLNDRVKQVS-----------------GTLIIKEAKVEDSGKYLC 85
WF+ E V N+ ++V +L I +A++ED+G Y
Sbjct: 40 YWFRDGEIPYYAEVVATNNPDRRVKPETQGRFRLLGDVQKKNCSLSIGDARMEDTGSYFF 99
Query: 86 VVNNSVGGE----SVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEP 141
V + + L VTA + ++ ++ GRP + +C
Sbjct: 100 RVERGRDVKYSYQQNKLNLEVTALIEKPDIHFLEPLESGRPTRLSC-------------- 145
Query: 142 TVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNEP---VFRIDSVRKEDKGMYQC 198
E P T SW + D + ++ C
Sbjct: 146 -----------SLPGSCEAGPPLTFSWTGNALSPLDPETTRSSELTLTPRPEDHGTNLTC 194
Query: 199 VIRNEQESAQASGELKL 215
++ + ++L
Sbjct: 195 QMKRQGAQVTTERTVQL 211
Score = 35.2 bits (80), Expect = 0.011
Identities = 25/153 (16%), Positives = 38/153 (24%), Gaps = 15/153 (9%)
Query: 120 GRPAQFTCKYEISPPLAAGVEPTVQTI----DFGRPAQFTCKYEGNPVKTISWMKDGKPV 175
G C + S P + + D P NP + + G+
Sbjct: 15 GLCVLVPCSF--SYPWRSWYSSPPLYVYWFRDGEIPYYAEVVATNNPDRRVKPETQGRFR 72
Query: 176 ----PDHNEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLGGRFDPPVIKESFS-D 230
I R ED G Y + ++ + + KL + K
Sbjct: 73 LLGDVQKKNCSLSIGDARMEDTGSYFFRVERGRDVKYSYQQNKLNLEVTALIEKPDIHFL 132
Query: 231 ETLNPGPNYYFKCIAS----GNPTPEISWYLDG 259
E L G C P SW +
Sbjct: 133 EPLESGRPTRLSCSLPGSCEAGPPLTFSWTGNA 165
>2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 113
Score = 48.2 bits (115), Expect = 1e-07
Identities = 17/69 (24%), Positives = 27/69 (39%), Gaps = 10/69 (14%)
Query: 149 GRPAQFTCKYEGNPVKTISWMKDGKPVPDHNEPVFR---------IDSVRKEDKGMYQCV 199
TC+ P + W KDG+ V + + + + +V+ ED G Y C
Sbjct: 28 LERVVLTCEL-CRPWAEVRWTKDGEEVVESPALLLQKEDTVRRLVLPAVQLEDSGEYLCE 86
Query: 200 IRNEQESAQ 208
I +E S
Sbjct: 87 IDDESASFT 95
Score = 39.7 bits (93), Expect = 1e-04
Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 4/37 (10%)
Query: 69 TLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTVTAP 105
L++ ++EDSG+YLC + ES +TVT P
Sbjct: 69 RLVLPAVQLEDSGEYLCE----IDDESASFTVTVTEP 101
Score = 32.4 bits (74), Expect = 0.039
Identities = 7/27 (25%), Positives = 12/27 (44%), Gaps = 1/27 (3%)
Query: 241 FKCIASGNPTPEISWYLDGKKLVNAER 267
C P E+ W DG+++V +
Sbjct: 33 LTCELC-RPWAEVRWTKDGEEVVESPA 58
>3m45_A Cell adhesion molecule 2; IG fold, dimer, disulfide bond,
glycoprotein, immunoglobulin membrane, transmembrane;
HET: NAG; 2.21A {Mus musculus}
Length = 108
Score = 47.9 bits (114), Expect = 1e-07
Identities = 13/74 (17%), Positives = 23/74 (31%), Gaps = 18/74 (24%)
Query: 145 TIDFGRPAQFTCKYEGNPVKTISWMKDGKPV------------------PDHNEPVFRID 186
T+ G A TC+ + N ++ W + +E +
Sbjct: 17 TVVEGGTAILTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSISVS 76
Query: 187 SVRKEDKGMYQCVI 200
V D+G Y C +
Sbjct: 77 DVSLSDEGQYTCSL 90
Score = 36.0 bits (83), Expect = 0.002
Identities = 7/37 (18%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Query: 69 TLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTVTAP 105
++ + + + D G+Y C + ++ + LTV
Sbjct: 72 SISVSDVSLSDEGQYTCSLFTM-PVKTSKAYLTVLGV 107
>1gsm_A Madcam-1, mucosal addressin cell adhesion molecule-1; cell adhesion
protein, immunoglobulin fold, I-SET fold, cell adhesion
glycoprotein; 1.9A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
PDB: 1bqs_A*
Length = 210
Score = 49.5 bits (117), Expect = 2e-07
Identities = 25/144 (17%), Positives = 44/144 (30%), Gaps = 15/144 (10%)
Query: 133 PPLAAGVEPTVQTIDFGRPAQFTCKYEG-NPVKTISWMKDGKPVP----DHNEPVFRIDS 187
PL V + G Q TC+ + ++ W + D V + +
Sbjct: 6 KPLQVEPPEPVVAVALGASRQLTCRLACADRGASVQWRGLDTSLGAVQSDTGRSVLTVRN 65
Query: 188 VRKEDKGMYQCVIRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASG 247
G CV + Q + +L + + + S L PG + C A
Sbjct: 66 ASLSAAGTRVCVGSCGGRTFQHTVQLLVYAFPNQLTV----SPAALVPG-DPEVACTAHK 120
Query: 248 NP-----TPEISWYLDGKKLVNAE 266
S + G++L A+
Sbjct: 121 VTPVDPNALSFSLLVGGQELEGAQ 144
Score = 34.5 bits (78), Expect = 0.023
Identities = 12/75 (16%), Positives = 21/75 (28%), Gaps = 4/75 (5%)
Query: 62 RVKQVSGTLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTV-TAPLAAGVEPTVQTIDFG 120
+ L ++ A + +G +CV + L V P V P
Sbjct: 53 QSDTGRSVLTVRNASLSAAGTRVCVGSCGGRTFQHTVQLLVYAFPNQLTVSPAALV---P 109
Query: 121 RPAQFTCKYEISPPL 135
+ C P+
Sbjct: 110 GDPEVACTAHKVTPV 124
>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like
protein 3, nephrin- like 2, structural genomics, NPPSFA;
NMR {Homo sapiens} SCOP: b.1.1.1
Length = 122
Score = 47.6 bits (113), Expect = 3e-07
Identities = 15/92 (16%), Positives = 22/92 (23%), Gaps = 17/92 (18%)
Query: 140 EPTVQTIDFGRPAQFTCKYEGNPV-KTISWMKDGKPVPDHNEPVFR-------------- 184
Q G Q C P I+W + +
Sbjct: 19 STQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETISTEEGVISTL 78
Query: 185 -IDSVRKEDKG-MYQCVIRNEQESAQASGELK 214
I ++ + D +Y C N S LK
Sbjct: 79 TISNIVRADFQTIYNCTAWNSFGSDTEIIRLK 110
Score = 45.3 bits (107), Expect = 2e-06
Identities = 21/104 (20%), Positives = 28/104 (26%), Gaps = 14/104 (13%)
Query: 13 APTFSSVSDIIRFKKPGGESFALLCEAQEN------MWFK----FIEGSSRKVAVPLNDR 62
P SS GE + C + W G+S + V
Sbjct: 14 PPIISSTQTQHALH---GEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETIST 70
Query: 63 VKQVSGTLIIKEAKVED-SGKYLCVVNNSVGGESVETVLTVTAP 105
+ V TL I D Y C NS G ++ L
Sbjct: 71 EEGVISTLTISNIVRADFQTIYNCTAWNSFGSDTEIIRLKEQGS 114
Score = 37.9 bits (88), Expect = 6e-04
Identities = 17/58 (29%), Positives = 24/58 (41%), Gaps = 5/58 (8%)
Query: 206 SAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPE-ISWYLDGKKL 262
S+ +SG L + G PP+I S + G KC P P+ I+W L
Sbjct: 2 SSGSSGTLTVNG---PPII-SSTQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVL 55
>1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural
cytotoxicity receptor, NK cell receptor, immunoglobulin
fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4
b.1.1.4
Length = 242
Score = 49.1 bits (117), Expect = 3e-07
Identities = 40/244 (16%), Positives = 69/244 (28%), Gaps = 49/244 (20%)
Query: 28 PGGESFALLC----EAQENMWFKFIEGSSRKVAVP-LNDRVKQVSGTLIIKEAKVEDSGK 82
P + + C A E EGS V P +R+ +V I + +G+
Sbjct: 19 PKEKQVTICCQGNYGAVEYQLHF--EGSLFAVDRPKPPERINKVK--FYIPDMNSRMAGQ 74
Query: 83 YLCVVNNSVGG--ESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVE 140
Y C+ S L VT +P L+
Sbjct: 75 YSCIYRVGELWSEPSNLLDLVVTEMYD------------------------TPTLSVHPG 110
Query: 141 PTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNEP-----VFRIDSVRKEDKGM 195
P V + G F C+ + +K+G+ F + V +G
Sbjct: 111 PEVIS---GEKVTFYCRLDTATS-MFLLLKEGRSSHVQRGYGKVQAEFPLGPVTTAHRGT 166
Query: 196 YQCVI-RNEQESAQASGELKLG--GRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPE 252
Y+C N + S +KL G + + + D T + +
Sbjct: 167 YRCFGSYNNHAWSFPSEPVKLLVTGDIENTSL--APEDPTFPADTWGTYLLTTETGLQKD 224
Query: 253 ISWY 256
+ +
Sbjct: 225 HALW 228
Score = 48.4 bits (115), Expect = 5e-07
Identities = 19/127 (14%), Positives = 34/127 (26%), Gaps = 13/127 (10%)
Query: 144 QTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDH--------NEPVFRIDSVRKEDKGM 195
+ + C+ +G N+ F I + G
Sbjct: 16 FMVPKEKQVTICCQGN-YGAVEYQLHFEGSLFAVDRPKPPERINKVKFYIPDMNSRMAGQ 74
Query: 196 YQCVIRNEQESAQASGELKL--GGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEI 253
Y C+ R + ++ S L L +D P + + G F C T
Sbjct: 75 YSCIYRVGELWSEPSNLLDLVVTEMYDTPTLSVHPG-PEVISGEKVTFYC-RLDTATSMF 132
Query: 254 SWYLDGK 260
+G+
Sbjct: 133 LLLKEGR 139
>1n26_A IL-6 receptor alpha chain; transmembrane, glycoprotein,
immunoglobulin domain, cytokine; HET: NAG BMA MAN NDG;
2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB:
1p9m_C 2arw_A
Length = 325
Score = 48.7 bits (115), Expect = 6e-07
Identities = 17/82 (20%), Positives = 21/82 (25%), Gaps = 7/82 (8%)
Query: 132 SPPLAAGVEPTVQTIDFGRPAQFTCK-YEGNPVKTISWMKDGKPVPDHNEPVF------R 184
A V V T G TC E T+ W+ H
Sbjct: 4 RRCPAQEVARGVLTSLPGDSVTLTCPGVEPEDNATVHWVLRKPAAGSHPSRWAGMGRRLL 63
Query: 185 IDSVRKEDKGMYQCVIRNEQES 206
+ SV+ D G Y C
Sbjct: 64 LRSVQLHDSGNYSCYRAGRPAG 85
Score = 39.1 bits (90), Expect = 8e-04
Identities = 21/111 (18%), Positives = 33/111 (29%), Gaps = 17/111 (15%)
Query: 30 GESFALLCEAQENM------WFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKY 83
G+S L C E W + A R + L+++ ++ DSG Y
Sbjct: 21 GDSVTLTCPGVEPEDNATVHWVL-----RKPAAGSHPSRWAGMGRRLLLRSVQLHDSGNY 75
Query: 84 LCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPP 134
C G L V P EP + + C++
Sbjct: 76 SCYRAGRPAG---TVHLLVDVP---PEEPQLSCFRKSPLSNVVCEWGPRST 120
>3rbg_A Cytotoxic and regulatory T-cell molecule; IGV, crtam, structural
genomics, PSI-biology, NEW YORK struc genomics research
consortium, nysgrc; 2.30A {Homo sapiens}
Length = 124
Score = 46.1 bits (109), Expect = 8e-07
Identities = 10/81 (12%), Positives = 26/81 (32%), Gaps = 18/81 (22%)
Query: 141 PTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPV------------------PDHNEPV 182
T++ G+ C ++ W+ N+
Sbjct: 8 TETITVEEGQTLTLKCVTSLRKNSSLQWLTPSGFTIFLNEYPVLKNSKYQLLHHSANQLS 67
Query: 183 FRIDSVRKEDKGMYQCVIRNE 203
+ +V +D+G+Y+C+ ++
Sbjct: 68 ITVPNVTLQDEGVYKCLHYSD 88
Score = 38.8 bits (90), Expect = 3e-04
Identities = 7/38 (18%), Positives = 16/38 (42%), Gaps = 1/38 (2%)
Query: 68 GTLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTVTAP 105
++ + ++D G Y C+ + + E + V A
Sbjct: 66 LSITVPNVTLQDEGVYKCLHYSD-SVSTKEVKVIVLAT 102
Score = 26.5 bits (58), Expect = 5.4
Identities = 6/42 (14%), Positives = 11/42 (26%)
Query: 222 PVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLV 263
+ T+ G KC+ S + W +
Sbjct: 2 GSLTNHTETITVEEGQTLTLKCVTSLRKNSSLQWLTPSGFTI 43
>1oll_A NK receptor; immune system/receptor, NK cell triggering receptor,
immune system, IG domain, cytotoxicity, C2-type IG-like
domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 188
Score = 47.1 bits (112), Expect = 8e-07
Identities = 18/127 (14%), Positives = 35/127 (27%), Gaps = 13/127 (10%)
Query: 144 QTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDH--------NEPVFRIDSVRKEDKGM 195
+ + C+ +G N+ F I + G
Sbjct: 13 FMVPKEKQVTICCQGN-YGAVEYQLHFEGSLFAVDRPKPPERINKVKFYIPDMNSRMAGQ 71
Query: 196 YQCVIRNEQESAQASG--ELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEI 253
Y C+ R + ++ S +L + +D P + + G F C T
Sbjct: 72 YSCIYRVGELWSEPSNLLDLVVTEMYDTPTLSVHPG-PEVISGEKVTFYC-RLDTATSMF 129
Query: 254 SWYLDGK 260
+G+
Sbjct: 130 LLLKEGR 136
Score = 41.3 bits (97), Expect = 8e-05
Identities = 32/185 (17%), Positives = 54/185 (29%), Gaps = 48/185 (25%)
Query: 28 PGGESFALLC----EAQENMWFKFIEGSSRKVAVP-LNDRVKQVSGTLIIKEAKVEDSGK 82
P + + C A E EGS V P +R+ +V I + +G+
Sbjct: 16 PKEKQVTICCQGNYGAVEYQLHF--EGSLFAVDRPKPPERINKVK--FYIPDMNSRMAGQ 71
Query: 83 YLCVVNNSVGG----ESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAG 138
Y C+ ++ L VT +P L+
Sbjct: 72 YSCIYRVGELWSEPSNLLD--LVVTEMYD------------------------TPTLSVH 105
Query: 139 VEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNEP-----VFRIDSVRKEDK 193
P V + G F C+ + +K+G+ F + V +
Sbjct: 106 PGPEVIS---GEKVTFYCRLDTATS-MFLLLKEGRSSHVQRGYGKVQAEFPLGPVTTAHR 161
Query: 194 GMYQC 198
G Y+C
Sbjct: 162 GTYRC 166
>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold,
natural killer cell receptor, immune SY; HET: NAG; 1.80A
{Homo sapiens} PDB: 1im9_D
Length = 316
Score = 47.6 bits (113), Expect = 2e-06
Identities = 33/255 (12%), Positives = 61/255 (23%), Gaps = 60/255 (23%)
Query: 30 GESFALLCEAQENM----WFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYLC 85
G L C + +K E + + + +G Y C
Sbjct: 38 GGHVTLRCHYRHRFNNFMLYK--EDRIH----IPIFHGRIFQESFNMSPVTTAHAGNYTC 91
Query: 86 VVNNSVGGE-----SVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVE 140
++ S V+ VT P L A
Sbjct: 92 RGSHPHSPTGWSAPSNPVVIMVTGNHR------------------------KPSLLAHPG 127
Query: 141 PTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVP----------DHNEPVFRIDSVRK 190
P V++ G C + K+G ++ F I +
Sbjct: 128 PLVKS---GERVILQCWSDIMFE-HFFLHKEGISKDPSRLVGQIHDGVSKANFSIGPMML 183
Query: 191 EDKGMYQCVIRNEQESAQASG-----ELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIA 245
G Y+C Q S ++ + G ++ P + + G + C +
Sbjct: 184 ALAGTYRCYGSVTHTPYQLSAPSDPLDIVVTGPYEKPSLSAQPG-PKVQAGESVTLSCSS 242
Query: 246 SGNPTPEISWYLDGK 260
+ +G
Sbjct: 243 RSSYDM-YHLSREGG 256
Score = 26.8 bits (59), Expect = 7.6
Identities = 15/83 (18%), Positives = 29/83 (34%), Gaps = 12/83 (14%)
Query: 30 GESFALLCEAQEN-MWFKFI-EGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYLCVV 87
GES L C ++ + + EG + + +P +V + G Y C
Sbjct: 233 GESVTLSCSSRSSYDMYHLSREGGAHERRLPAVRKVNRTFQADFPL-GPATHGGTYRCFG 291
Query: 88 NN-------SVGGESVETVLTVT 103
+ S + + ++VT
Sbjct: 292 SFRHSPYEWSDPSDPLL--VSVT 312
>2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A
{Homo sapiens}
Length = 184
Score = 46.0 bits (109), Expect = 2e-06
Identities = 36/192 (18%), Positives = 53/192 (27%), Gaps = 47/192 (24%)
Query: 28 PGGESFALLCEA-QENMWFK-FIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYLC 85
P + L C+ ++ SSR Q L I K +G+Y C
Sbjct: 20 PLEKPVTLRCQGPPGVDLYRLEKLSSSRY----------QDQAVLFIPAMKRSLAGRYRC 69
Query: 86 VVNNSVGG--ESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTV 143
N S + L T P L+A P V
Sbjct: 70 SYQNGSLWSLPSDQLELVATGVF------------------------AKPSLSAQPGPAV 105
Query: 144 QTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHN-----EPVFRIDSVRKEDKGMYQC 198
+ G C+ + K+G P P N F I +V G Y+C
Sbjct: 106 SS---GGDVTLQCQTRYGFD-QFALYKEGDPAPYKNPERWYRASFPIITVTAAHSGTYRC 161
Query: 199 VIRNEQESAQAS 210
+ ++ S
Sbjct: 162 YSFSSRDPYLWS 173
Score = 45.2 bits (107), Expect = 4e-06
Identities = 20/121 (16%), Positives = 41/121 (33%), Gaps = 6/121 (4%)
Query: 144 QTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNEPVFRIDSVRKEDKGMYQCVIRNE 203
+ +P C+ V K ++ V I ++++ G Y+C +N
Sbjct: 17 SLVPLEKPVTLRCQGPP-GVDLYRLEKLSSSRY-QDQAVLFIPAMKRSLAGRYRCSYQNG 74
Query: 204 QESAQASG--ELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKK 261
+ S EL G F P + ++ G + +C + + + Y +G
Sbjct: 75 SLWSLPSDQLELVATGVFAKPSLSAQPG-PAVSSGGDVTLQCQ-TRYGFDQFALYKEGDP 132
Query: 262 L 262
Sbjct: 133 A 133
>1z9m_A GAPA225; nectin-like, IG-like domain, V domain, cell adhesion;
2.40A {Homo sapiens}
Length = 145
Score = 45.2 bits (106), Expect = 2e-06
Identities = 12/78 (15%), Positives = 23/78 (29%), Gaps = 18/78 (23%)
Query: 141 PTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNEPVF----------------- 183
+ +T+ G C+ + + ++ W + E
Sbjct: 45 TSDETVVAGGTVVLKCQVKDHEDSSLQWSNPAQQTLYFGEKRALRDNRIQLVTSTPHELS 104
Query: 184 -RIDSVRKEDKGMYQCVI 200
I +V D+G Y C I
Sbjct: 105 ISISNVALADEGEYTCSI 122
Score = 37.5 bits (86), Expect = 0.001
Identities = 7/37 (18%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Query: 69 TLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTVTAP 105
++ I + D G+Y C + + ++++TV
Sbjct: 104 SISISNVALADEGEYTCSIFTM-PVRTAKSLVTVLGI 139
>2edo_A CD48 antigen; beta-sandwich, IG-fold, B-lymphocyte activation
marker blast-1, BCM1 surface antigen, leukocyte antigen
MEM-102, TCT.1; NMR {Homo sapiens}
Length = 121
Score = 44.5 bits (105), Expect = 3e-06
Identities = 21/103 (20%), Positives = 34/103 (33%), Gaps = 20/103 (19%)
Query: 30 GESFALLCEAQEN------MWFK--------FIEGSSRKVAVPLNDRVK--QVSGTLIIK 73
G + L WF + S+ RV+ SG L I
Sbjct: 19 GSNVTLNISESLPENYKQLTWFYTFDQKIVEWDSRKSKYFESKFKGRVRLDPQSGALYIS 78
Query: 74 EAKVEDSGKYLCVVNNSVGGESVETV-LTVTAPLAAGVEPTVQ 115
+ + ED+ Y+ V G E + L V P+ +P ++
Sbjct: 79 KVQKEDNSTYIMRVLKKTGNEQEWKIKLQVLDPVP---KPVIK 118
Score = 29.1 bits (65), Expect = 0.75
Identities = 12/82 (14%), Positives = 20/82 (24%), Gaps = 22/82 (26%)
Query: 149 GRPAQFTCKY-EGNPVKTISWMKDGKP--------VPDHNEPVFR-------------ID 186
G K ++W + E F+ I
Sbjct: 19 GSNVTLNISESLPENYKQLTWFYTFDQKIVEWDSRKSKYFESKFKGRVRLDPQSGALYIS 78
Query: 187 SVRKEDKGMYQCVIRNEQESAQ 208
V+KED Y + + + Q
Sbjct: 79 KVQKEDNSTYIMRVLKKTGNEQ 100
>3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG,
inhibitory receptor, disulfide, immune system; 1.70A
{Homo sapiens}
Length = 196
Score = 45.2 bits (107), Expect = 4e-06
Identities = 25/128 (19%), Positives = 43/128 (33%), Gaps = 13/128 (10%)
Query: 144 QTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDH--------NEPVFRIDSVRKEDKGM 195
I +G C+ + K+ P P N+ F I S+ ++ G
Sbjct: 14 SVISWGNSVTIWCQGT-LEAREYRLDKEESPAPWDRQNPLEPKNKARFSIPSMTEDYAGR 72
Query: 196 YQCVIRNEQESAQASGELKL--GGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEI 253
Y+C R+ +Q S L+L G + P + S + G + C S +P
Sbjct: 73 YRCYYRSPVGWSQPSDPLELVMTGAYSKPTLSALPS-PLVTSGKSVTLLC-QSRSPMDTF 130
Query: 254 SWYLDGKK 261
+
Sbjct: 131 LLCKERAA 138
Score = 41.0 bits (96), Expect = 1e-04
Identities = 35/202 (17%), Positives = 54/202 (26%), Gaps = 53/202 (26%)
Query: 28 PGGESFALLC----EAQENMWFKFIEGSSRKVAVPLNDRVKQVSG---TLIIKEAKVEDS 80
G S + C EA+E K E S P + + I + +
Sbjct: 17 SWGNSVTIWCQGTLEAREYRLDK--EESP----APWDRQNPLEPKNKARFSIPSMTEDYA 70
Query: 81 GKYLCVVNNSVGG--ESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAG 138
G+Y C + VG S L +T P L+A
Sbjct: 71 GRYRCYYRSPVGWSQPSDPLELVMTGAY------------------------SKPTLSAL 106
Query: 139 VEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDH----------NEPVFRIDSV 188
P V + G+ C+ T K+ P ++ F + V
Sbjct: 107 PSPLVTS---GKSVTLLCQSRSPMD-TFLLCKERAAHPLLCLRSEHGAQQHQAEFPMSPV 162
Query: 189 RKEDKGMYQCVIRNEQESAQAS 210
G Y+C + S
Sbjct: 163 TSVHGGTYRCFSSHGFSHYLLS 184
>2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform
1; immunoglobulin-like fold, immune system; 1.85A {Homo
sapiens}
Length = 196
Score = 45.3 bits (107), Expect = 4e-06
Identities = 25/127 (19%), Positives = 43/127 (33%), Gaps = 13/127 (10%)
Query: 144 QTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDH--------NEPVFRIDSVRKEDKGM 195
I G C+ + +K+G P P N+ F I S+ + G
Sbjct: 14 SVISRGNSVTIRCQGT-LEAQEYRLVKEGSPEPWDTQNPLEPKNKARFSIPSMTEHHAGR 72
Query: 196 YQCVIRNEQESAQASGELKL--GGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEI 253
Y+C + ++ S L+L G ++ P + S + G N +C S
Sbjct: 73 YRCYYYSPAGWSEPSDPLELVVTGFYNKPTLSALPS-PVVTSGENVTLQC-GSRLRFDRF 130
Query: 254 SWYLDGK 260
+G
Sbjct: 131 ILTEEGD 137
Score = 37.5 bits (87), Expect = 0.002
Identities = 33/191 (17%), Positives = 48/191 (25%), Gaps = 54/191 (28%)
Query: 28 PGGESFALLC----EAQENMWFKFIEGSSRKVAVPLNDRVKQVSG---TLIIKEAKVEDS 80
G S + C EAQE K EGS P + + I +
Sbjct: 17 SRGNSVTIRCQGTLEAQEYRLVK--EGSPE----PWDTQNPLEPKNKARFSIPSMTEHHA 70
Query: 81 GKYLCVVNNSVGG--ESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAG 138
G+Y C + G S L VT P L+A
Sbjct: 71 GRYRCYYYSPAGWSEPSDPLELVVTGFYNK------------------------PTLSAL 106
Query: 139 VEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVP-----------DHNEPVFRIDS 187
P V + G C ++G + +F +
Sbjct: 107 PSPVVTS---GENVTLQCGSRLRFD-RFILTEEGDHKLSWTLDSQLTPSGQFQALFPVGP 162
Query: 188 VRKEDKGMYQC 198
V + M +C
Sbjct: 163 VTPSHRWMLRC 173
>3pv7_A B7-H6, IG-like domain-containing protein
DKFZP686O24166/DKFZP686I21167; NK cell receptor,
receptor-ligand complex, immune system; HET: NAG; 2.00A
{Homo sapiens} PDB: 3pv6_A*
Length = 248
Score = 45.4 bits (107), Expect = 5e-06
Identities = 33/241 (13%), Positives = 72/241 (29%), Gaps = 63/241 (26%)
Query: 24 RFKKPGGESFALLCEAQENMWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKY 83
+K + + E + + R A+ R+K +L + ++E++G+Y
Sbjct: 43 FWKSLTFDKEVKVFEFFGDHQ-----EAFRPGAIVSPWRLKSGDASLRLPGIQLEEAGEY 97
Query: 84 LCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTV 143
C V + L V A P + +
Sbjct: 98 RCEVVVTPLKAQGTVQLEVVAS------PASR---------------LLLD--------- 127
Query: 144 QTIDFGRPAQFTCKYEG-NPVK-TISWMKDGKPVPDHNEPV------------------- 182
Q ++ C+ G P I+W K + P E
Sbjct: 128 QVGMKENEDKYMCESSGFYPEAINITWEKQTQKFPHPIEISEDVITGPTIKNMDGTFNVT 187
Query: 183 --FRIDSVRKEDKGMYQCVIRNE--QESAQASGELKLGGRFDPPVIKESFSDETLNPGPN 238
+++S +++ +YQCV+R+ +++ L + + +D +
Sbjct: 188 SCLKLNSSQEDPGTVYQCVVRHASLHTPLRSNFTLTAAR---HSLSETEKTDNFSAAAHH 244
Query: 239 Y 239
+
Sbjct: 245 H 245
Score = 38.1 bits (88), Expect = 0.001
Identities = 24/171 (14%), Positives = 48/171 (28%), Gaps = 16/171 (9%)
Query: 97 ETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTC 156
+ + + A Q C S PL +
Sbjct: 2 DLKVEMMAG-------GTQITPLNDNVTIFCNIFYSQPLNITSMGITWFWKSLTFDKEVK 54
Query: 157 KYEGNPVKTISWMKDGKPVPDH---NEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGEL 213
+E ++ P + R+ ++ E+ G Y+C + AQ + +L
Sbjct: 55 VFEFFGDHQEAFRPGAIVSPWRLKSGDASLRLPGIQLEEAGEYRCEVVVTPLKAQGTVQL 114
Query: 214 KLGGRFDPPVIKESFSDETLNPGPNYYFKCIASG-NPTP-EISWYLDGKKL 262
+ P + + + + C +SG P I+W +K
Sbjct: 115 E---VVASPASRLLLDQVGMKENED-KYMCESSGFYPEAINITWEKQTQKF 161
>1zxq_A ICAM-2, intercellular adhesion molecule-2; immunoglobulin fold,
cell adhesion, glycoprotein, transmembr; HET: NAG; 2.20A
{Homo sapiens} SCOP: b.1.1.3 b.1.1.4
Length = 192
Score = 44.4 bits (104), Expect = 1e-05
Identities = 10/130 (7%), Positives = 34/130 (26%), Gaps = 6/130 (4%)
Query: 139 VEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNEPVFRIDSVRK-EDKGMYQ 197
V P ++ + C N + + + ++ V + Q
Sbjct: 7 VRPKKLAVEPKGSLEVNCSTTCNQPEVGGLETSLNKILLDEQAQWKHYLVSNISHDTVLQ 66
Query: 198 CVIRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGN---PTPEIS 254
C + + + + ++ + + G ++ +C + +
Sbjct: 67 CHFTCSGKQESMNSNVSVYQPPRQVIL--TLQPTLVAVGKSFTIECRVPTVEPLDSLTLF 124
Query: 255 WYLDGKKLVN 264
+ + L
Sbjct: 125 LFRGNETLHY 134
Score = 32.4 bits (73), Expect = 0.078
Identities = 10/61 (16%), Positives = 19/61 (31%), Gaps = 1/61 (1%)
Query: 77 VEDSGKYLCVVNNSVGGESVETVLTV-TAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPL 135
+ C S ES+ + ++V P + + G+ C+ PL
Sbjct: 59 ISHDTVLQCHFTCSGKQESMNSNVSVYQPPRQVILTLQPTLVAVGKSFTIECRVPTVEPL 118
Query: 136 A 136
Sbjct: 119 D 119
>1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like
folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4
b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A
2dyp_D 2otp_A 3q2c_A
Length = 198
Score = 42.9 bits (101), Expect = 3e-05
Identities = 33/197 (16%), Positives = 54/197 (27%), Gaps = 45/197 (22%)
Query: 30 GESFALLCEA-QENMWFK-FIEGSSRKVAVPLNDRVKQVSG---TLIIKEAKVEDSGKYL 84
G L C+ QE ++ + E + P R+ Q I E +G+Y
Sbjct: 19 GSPVTLRCQGGQETQEYRLYREKKTA----PWITRIPQELVKKGQFPIPSITWEHTGRYR 74
Query: 85 CVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQ 144
C + G S + PL V P L+A P V
Sbjct: 75 CYYGSDTAGRSESS-----DPLELVVTGAYIK----------------PTLSAQPSPVVN 113
Query: 145 TIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHN-----------EPVFRIDSVRKEDK 193
+ G C + K+G+ +F + V +
Sbjct: 114 S---GGNVTLQCDSQVAFD-GFILCKEGEDEHPQCLNSQPHARGSSRAIFSVGPVSPSRR 169
Query: 194 GMYQCVIRNEQESAQAS 210
Y+C + + S
Sbjct: 170 WWYRCYAYDSNSPYEWS 186
Score = 39.1 bits (91), Expect = 5e-04
Identities = 25/128 (19%), Positives = 41/128 (32%), Gaps = 14/128 (10%)
Query: 144 QTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDH--------NEPVFRIDSVRKEDKGM 195
I G P C+ + ++ K P + F I S+ E G
Sbjct: 14 SVITQGSPVTLRCQGG-QETQEYRLYREKKTAPWITRIPQELVKKGQFPIPSITWEHTGR 72
Query: 196 YQCVIRNEQESAQASG---ELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPE 252
Y+C ++ S EL + G + P + S +N G N +C S
Sbjct: 73 YRCYYGSDTAGRSESSDPLELVVTGAYIKPTLSAQPS-PVVNSGGNVTLQC-DSQVAFDG 130
Query: 253 ISWYLDGK 260
+G+
Sbjct: 131 FILCKEGE 138
>1iam_A ICAM-1, CD54, intercellular adhesion molecule-1; rhinovirus
receptor, cell adhesion, integrin ligand, glycopr LFA-1
ligand, immunoglobulin fold; HET: NAG; 2.10A {Homo
sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ic1_A* 1d3l_A
1d3e_I 1d3i_I 3tcx_A
Length = 185
Score = 42.8 bits (100), Expect = 3e-05
Identities = 20/133 (15%), Positives = 41/133 (30%), Gaps = 11/133 (8%)
Query: 139 VEPTVQTIDFGRPAQFTCKYEGNPVKTISW----MKDGKPVPDHNEPVFRIDSVRKEDKG 194
V P+ + G TC + K + K +P +N V+ + +V+++
Sbjct: 4 VSPSKVILPRGGSVLVTCSTSCDQPKLLGIETPLPKKELLLPGNNRKVYELSNVQED--S 61
Query: 195 MYQCVIRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKC-IASGNPTP-- 251
C + A L + + + + G +C + G P
Sbjct: 62 QPMCYSNCPDGQSTAKTFLTVYWTPERVEL--APLPSWQPVGKQLTLRCQVEGGAPRAQL 119
Query: 252 EISWYLDGKKLVN 264
+ K+L
Sbjct: 120 TVVLLRGEKELKR 132
Score = 36.6 bits (84), Expect = 0.003
Identities = 24/183 (13%), Positives = 52/183 (28%), Gaps = 37/183 (20%)
Query: 28 PGGESFALLCEAQENMWFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYLCVV 87
P G S + C + + + +P + + + + + + V++ + +C
Sbjct: 12 PRGGSVLVTCSTSCDQ----PKLLGIETPLPKKELLLPGNNRKVYELSNVQEDSQPMCYS 67
Query: 88 NNSVGGESVETVLTV-TAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTI 146
N G + +T LTV P + P G+ C+ G P
Sbjct: 68 NCPDGQSTAKTFLTVYWTPERVELAPLPSWQPVGKQLTLRCQ-------VEGGAPR---- 116
Query: 147 DFGRPAQFTCKYEGNPVKTISWMKDGKPV------PDHNEPVFRIDSVRKEDKGMYQCVI 200
T+ ++ K + + E + R + C
Sbjct: 117 ---------------AQLTVVLLRGEKELKREPAVGEPAEVTTTVLVRRDHHGAQFSCRT 161
Query: 201 RNE 203
+
Sbjct: 162 ELD 164
>3r08_E T-cell surface glycoprotein CD3 epsilon chain; antibody, T-cell
receptor, signalling, immune SY; 4.10A {Cricetulus
migratorius}
Length = 82
Score = 40.4 bits (94), Expect = 4e-05
Identities = 12/60 (20%), Positives = 24/60 (40%), Gaps = 3/60 (5%)
Query: 149 GRPAQFTCKYEGNPVKTISWMKDGKPVPDHNEPVFRIDSV-RKEDKGMYQCVIRNEQESA 207
G + TC + + + W K+G+ +P ++ + ED G Y C ++
Sbjct: 14 GTSVELTCPLDSDE--NLKWEKNGQELPQKHDKHLVLQDFSEVEDSGYYVCYTPASNKNT 71
>3q0h_A T cell immunoreceptor with IG and ITIM domains; immune receptor,
adhesion, structural genomics, NEW YORK STR genomics
research consortium, nysgrc; 1.70A {Homo sapiens} PDB:
3rq3_A 3udw_A* 3ucr_A
Length = 117
Score = 40.7 bits (95), Expect = 5e-05
Identities = 13/71 (18%), Positives = 23/71 (32%), Gaps = 9/71 (12%)
Query: 44 WFK-------FIEGSSRKVAVPLNDRVKQV-SGTLIIKEAKVEDSGKYLCVVNNSVGG-E 94
W + ++ DRV L ++ V D+G+Y C+ + G
Sbjct: 39 WEQQDQLLAICNADLGWHISPSFKDRVAPGPGLGLTLQSLTVNDTGEYFCIYHTYPDGTY 98
Query: 95 SVETVLTVTAP 105
+ L V
Sbjct: 99 TGRIFLEVLES 109
Score = 36.8 bits (85), Expect = 0.001
Identities = 14/101 (13%), Positives = 28/101 (27%), Gaps = 25/101 (24%)
Query: 149 GRPAQFTCKYEGNP--VKTISWMKDGKPVPDHNE-------PVFR------------IDS 187
G C V ++W + + + N P F+ + S
Sbjct: 18 GGSIILQCHLSSTTAQVTQVNWEQQDQLLAICNADLGWHISPSFKDRVAPGPGLGLTLQS 77
Query: 188 VRKEDKGMYQCVIR-NEQESAQASGELKLGGRFDPPVIKES 227
+ D G Y C+ + L++ + V +
Sbjct: 78 LTVNDTGEYFCIYHTYPDGTYTGRIFLEV---LESSVAEHG 115
>2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast
MYBP-C, C-protein, skeletal muscle fast isoform,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 40.6 bits (94), Expect = 6e-05
Identities = 15/69 (21%), Positives = 21/69 (30%), Gaps = 7/69 (10%)
Query: 44 WFK-------FIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYLCVVNNSVGGESV 96
WFK G+ N + L I + + D G Y V +S
Sbjct: 49 WFKGKWLELGSKSGARFSFKESHNSASNVYTVELHIGKVVLGDRGYYRLEVKAKDTCDSC 108
Query: 97 ETVLTVTAP 105
+ V AP
Sbjct: 109 GFNIDVEAP 117
Score = 32.5 bits (73), Expect = 0.042
Identities = 17/97 (17%), Positives = 32/97 (32%), Gaps = 23/97 (23%)
Query: 140 EPTVQTIDFGRPAQFTCKYEGNPV---KTISWMKDGKPV---------------PDHNEP 181
+P +++ G+ A K G + TI W K GK + +
Sbjct: 18 KPDSVSVETGKDAVVVAKVNGKELPDKPTIKWFK-GKWLELGSKSGARFSFKESHNSASN 76
Query: 182 VF----RIDSVRKEDKGMYQCVIRNEQESAQASGELK 214
V+ I V D+G Y+ ++ + +
Sbjct: 77 VYTVELHIGKVVLGDRGYYRLEVKAKDTCDSCGFNID 113
>1xt5_A Variable region-containing chitin-binding protein 3; innate
immunity, VCBP, primordial antigen receptor, florida
lancelet, amphioxus; 1.15A {Branchiostoma floridae}
Length = 135
Score = 40.6 bits (94), Expect = 9e-05
Identities = 18/130 (13%), Positives = 36/130 (27%), Gaps = 18/130 (13%)
Query: 97 ETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLA---------AGVEPTVQTID 147
++++TV V+ G + C Y+++ A + + +
Sbjct: 2 QSIMTVRTT-----HTEVEVHA-GGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFK 55
Query: 148 FGRPAQFTCKYEGNPVKTISWMKDGK---PVPDHNEPVFRIDSVRKEDKGMYQCVIRNEQ 204
Q D V + P R+ V +D G Y C +
Sbjct: 56 GNYNWQGEGLGFVESDSYKESFGDFLGRASVANLAAPTLRLTHVHPQDGGRYWCQVAQWS 115
Query: 205 ESAQASGELK 214
+ + K
Sbjct: 116 IRTEFGLDAK 125
Score = 30.6 bits (68), Expect = 0.23
Identities = 11/47 (23%), Positives = 15/47 (31%), Gaps = 5/47 (10%)
Query: 64 KQVSGTLIIKEAKVEDSGKYLCVVNNSVGGESVET-----VLTVTAP 105
+ TL + +D G+Y C V VL VT
Sbjct: 88 NLAAPTLRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAKSVVLKVTGH 134
>2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal
regulatory protein alpha, immunoglobulin superfamily,
phosphoprotein; HET: NAG; 2.49A {Homo sapiens}
Length = 327
Score = 41.8 bits (98), Expect = 1e-04
Identities = 26/220 (11%), Positives = 48/220 (21%), Gaps = 49/220 (22%)
Query: 69 TLIIKEAKVEDSGKYLCVVNNS------VGGESVETVLTVTAPLAAGVEPTVQTIDFGRP 122
++ I D+G Y CV + + P A V
Sbjct: 75 SISISNITPADAGTYYCVKFRKGSPDTEFKSGAGTELSVRAKPSAPVVSGPAARATPQHT 134
Query: 123 AQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNEPV 182
FTC + G P T+ W K+G + D V
Sbjct: 135 VSFTC-------ESHGFSP--------------------RDITLKWFKNGNELSDFQTNV 167
Query: 183 F--------------RIDSVRKEDKGMYQCVIRNEQESAQASGELKLGGRFDPPVIKESF 228
++ R++ C + +
Sbjct: 168 DPVGESVSYSIHSTAKVVLTREDVHSQVICEVAHVTLQGDPLRGTANLSETIRVPPTLEV 227
Query: 229 SDETLNPGPNYYFKCIASG-NPTP-EISWYLDGKKLVNAE 266
+ + + C P +++W +G
Sbjct: 228 TQQPVRAENQVNVTCQVRKFYPQRLQLTWLENGNVSRTET 267
Score = 30.7 bits (69), Expect = 0.44
Identities = 17/133 (12%), Positives = 38/133 (28%), Gaps = 33/133 (24%)
Query: 66 VSGTLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQF 125
+ T + + + + +C V + G P +
Sbjct: 178 IHSTAKVVLTREDVHSQVICEVAHVTL--------------------------QGDPLRG 211
Query: 126 TCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEG-NPVK-TISWMKDGKPVPDHNEPVF 183
T + + +E T Q + TC+ P + ++W+++G
Sbjct: 212 TANLSETIRVPPTLEVTQQPVRAENQVNVTCQVRKFYPQRLQLTWLENGNVSRTETAS-- 269
Query: 184 RIDSVRKEDKGMY 196
+V + G Y
Sbjct: 270 ---TVTENKDGTY 279
>1nkr_A P58-CL42 KIR; inhibitory receptor, natural killer cells,
immunological receptors, immunoglobulin fold; 1.70A
{Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1m4k_A 1efx_D
2dli_A 2dl2_A 3h8n_A
Length = 201
Score = 40.7 bits (95), Expect = 2e-04
Identities = 16/99 (16%), Positives = 36/99 (36%), Gaps = 7/99 (7%)
Query: 167 SWMKDGKPVPDHNEPVFRIDSVRKEDKGMYQCVIRNEQESAQASG-----ELKLGGRFDP 221
+ G+ ++ F I + ++ G Y+C Q S ++ + G ++
Sbjct: 49 TLRLIGEHHDGVSKANFSISRMTQDLAGTYRCYGSVTHSPYQVSAPSDPLDIVIIGLYEK 108
Query: 222 PVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGK 260
P + + T+ G N C +S + +G+
Sbjct: 109 PSL-SAQPGPTVLAGENVTLSC-SSRSSYDMYHLSREGE 145
Score = 33.0 bits (75), Expect = 0.065
Identities = 27/189 (14%), Positives = 49/189 (25%), Gaps = 52/189 (27%)
Query: 30 GESFALLC----EAQENMWFKFIEGSSRKVAVPLNDRVKQVSGT-LIIKEAKVEDSGKYL 84
E+ L C + + + EG + + VS I + +G Y
Sbjct: 22 EETVILQCWSDVMFEHFLLHR--EGMFNDTLRLIGEHHDGVSKANFSISRMTQDLAGTYR 79
Query: 85 C--VVNNSVGGESV--ETV-LTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGV 139
C V +S S + + + + P L+A
Sbjct: 80 CYGSVTHSPYQVSAPSDPLDIVIIGLYE------------------------KPSLSAQP 115
Query: 140 EPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHN----------EPVFRIDSVR 189
PTV G +C + ++G+ + F +
Sbjct: 116 GPTVLA---GENVTLSCSSRSSYD-MYHLSREGEAHERRLPAGPKVNGTFQADFPLGPA- 170
Query: 190 KEDKGMYQC 198
G Y+C
Sbjct: 171 -THGGTYRC 178
>2nms_A CMRF35-like-molecule 1; IG-superfamily, IG-V, NKP44-like, myeloid
IG-like receptor, inhibitory receptor, myelo-monocytic
cells; 2.60A {Homo sapiens}
Length = 124
Score = 39.1 bits (91), Expect = 2e-04
Identities = 9/57 (15%), Positives = 21/57 (36%)
Query: 59 LNDRVKQVSGTLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTVTAPLAAGVEPTVQ 115
+ D K + T+ +++ D+ Y C + + V +T+ E +
Sbjct: 66 IKDNQKNRTFTVTMEDLMKTDADTYWCGIEKTGNDLGVTVQVTIDPAPVTQEETSSS 122
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 41.0 bits (95), Expect = 3e-04
Identities = 32/191 (16%), Positives = 47/191 (24%), Gaps = 55/191 (28%)
Query: 5 DLKPV-GFKAPTFSS--VSDIIRFKKPGGES-----FALLCEAQENMWFKFIEGSSRK-- 54
D K V S + II S F L QE M KF+E R
Sbjct: 34 DCKDVQDMPKSILSKEEIDHII--MSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINY 91
Query: 55 --VAVPLNDRVKQVSGTLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTVTAPLAAGVEP 112
+ P+ +Q S + Y+ + V V+
Sbjct: 92 KFLMSPIKTEQRQPSM----------MTRMYIEQRDRLYNDNQVFAKYNVS--------- 132
Query: 113 TVQTIDFGRPAQF----TCKYEISPPLA------AGVEPTVQTIDFGRPAQFTCKYEGNP 162
R + E+ P G T +D + CK +
Sbjct: 133 --------RLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFK- 183
Query: 163 VKTISWMKDGK 173
I W+
Sbjct: 184 ---IFWLNLKN 191
>1b6u_A KIR2DL3, P58 killer cell inhibitory receptor; natural killer cell,
HLA, major histocompatibility complex class I (MHC class
I); 3.00A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 257
Score = 40.3 bits (94), Expect = 3e-04
Identities = 17/132 (12%), Positives = 40/132 (30%), Gaps = 18/132 (13%)
Query: 144 QTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVP----------DHNEPVFRIDSVRKEDK 193
+ C + + ++GK ++ F I + ++
Sbjct: 16 PLVKSEETVILQCWSDVRFQHFL-LHREGKFKDTLHLIGEHHDGVSKANFSIGPMMQDLA 74
Query: 194 GMYQCVIRNEQESAQASG-----ELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGN 248
G Y+C Q S ++ + G ++ P + T+ G + C +S +
Sbjct: 75 GTYRCYGSVTHSPYQLSAPSDPLDIVITGLYEKPSLSAQPG-PTVLAGESVTLSC-SSRS 132
Query: 249 PTPEISWYLDGK 260
+G+
Sbjct: 133 SYDMYHLSREGE 144
Score = 35.3 bits (81), Expect = 0.013
Identities = 33/251 (13%), Positives = 64/251 (25%), Gaps = 59/251 (23%)
Query: 30 GESFALLC----EAQENMWFKFIEGSSRKVAVP-LNDRVKQVSGTLIIKEAKVEDSGKYL 84
E+ L C Q + + + + +D V + + I + +G Y
Sbjct: 21 EETVILQCWSDVRFQHFLLHREGKFKDTLHLIGEHHDGVSKAN--FSIGPMMQDLAGTYR 78
Query: 85 C--VVNNSVGGESV--ETV-LTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGV 139
C V +S S + + + +T P L+A
Sbjct: 79 CYGSVTHSPYQLSAPSDPLDIVITGLYE------------------------KPSLSAQP 114
Query: 140 EPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHN----------EPVFRIDSVR 189
PTV G +C + ++G+ + F +
Sbjct: 115 GPTVLA---GESVTLSCSSRSSYD-MYHLSREGEAHERRFSAGPKVNGTFQADFPLGPA- 169
Query: 190 KEDKGMYQCVIRNEQESAQASG-----ELKLGGRFDPPVIKESFSDETLNPGPNYYFKCI 244
G Y+C + S + + G S ++ + G +
Sbjct: 170 -THGGTYRCFGSFRDSPYEWSNSSDPLLVSVTGNPSNSWP--SPTEPSSETGNPRHLHAA 226
Query: 245 ASGNPTPEISW 255
A E
Sbjct: 227 AEQKLISEEDL 237
>1xed_A Polymeric-immunoglobulin receptor; IG-like fold, immune system;
1.90A {Homo sapiens} SCOP: b.1.1.1
Length = 117
Score = 38.3 bits (89), Expect = 3e-04
Identities = 11/45 (24%), Positives = 21/45 (46%)
Query: 59 LNDRVKQVSGTLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTVT 103
L + + + + I + +DSG+Y C + + G S + L V
Sbjct: 66 LTNFPENGTFVVNIAQLSQDDSGRYKCGLGINSRGLSFDVSLEVL 110
>1pko_A Myelin oligodendrocyte glycoprotein; IGV-domain, immune system;
1.45A {Rattus norvegicus} SCOP: b.1.1.1 PDB: 1pkq_E
3csp_A 1py9_A
Length = 139
Score = 38.8 bits (90), Expect = 4e-04
Identities = 11/50 (22%), Positives = 17/50 (34%)
Query: 56 AVPLNDRVKQVSGTLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTVTAP 105
L + + + L I+ + D G Y C + E L V P
Sbjct: 73 TELLKESIGEGKVALRIQNVRFSDEGGYTCFFRDHSYQEEAAVELKVEDP 122
Score = 34.9 bits (80), Expect = 0.009
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 184 RIDSVRKEDKGMYQCVIRNEQESAQASGELK 214
RI +VR D+G Y C R+ +A+ ELK
Sbjct: 88 RIQNVRFSDEGGYTCFFRDHSYQEEAAVELK 118
>1xiw_A T-cell surface glycoprotein CD3 epsilon chain; CD3-epsilon,
CD3-delta, UCHT1-SCFV, immunoglobulin fold,
antibody-antigen complex; 1.90A {Homo sapiens} SCOP:
b.1.1.4
Length = 105
Score = 37.8 bits (87), Expect = 4e-04
Identities = 12/69 (17%), Positives = 17/69 (24%), Gaps = 11/69 (15%)
Query: 149 GRPAQFTCKYEGNPVKTISWMKDGKPVPDHNEPVFRI---------DSVRKEDKGMYQCV 199
G TC P I W + K + + + E G Y C
Sbjct: 21 GTTVILTCPQY--PGSEILWQHNDKNIGGDEDDKNIGSDEDHLSLKEFSELEQSGYYVCY 78
Query: 200 IRNEQESAQ 208
R +
Sbjct: 79 PRGSKPEDA 87
Score = 25.9 bits (56), Expect = 7.4
Identities = 9/27 (33%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
Query: 67 SGTLIIKE-AKVEDSGKYLCVVNNSVG 92
L +KE +++E SG Y+C S
Sbjct: 58 EDHLSLKEFSELEQSGYYVCYPRGSKP 84
>3f8u_B Tapasin; endoplasmic reticulum, glycoprotein, immunoglobulin
domain, microsome, protein disulfide isomerase,
thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo
sapiens}
Length = 401
Score = 40.0 bits (92), Expect = 6e-04
Identities = 21/135 (15%), Positives = 32/135 (23%), Gaps = 32/135 (23%)
Query: 68 GTLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTC 127
GT + + G YL ++ V L V P P V
Sbjct: 254 GTFWLPRVQPFQEGTYLATIHLPYLQGQVTLELAVYKP------PKVS------------ 295
Query: 128 KYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEG-NPVK--TISWMKDGKPVPDH--NEPV 182
+ P + P + C P + W G P E
Sbjct: 296 ---LMPA------TLARAAPGEAPPELLCLVSHFYPSGGLEVEWELRGGPGGRSQKAEGQ 346
Query: 183 FRIDSVRKEDKGMYQ 197
+ ++R G
Sbjct: 347 RWLSALRHHSDGSVS 361
>2ptt_A CD48 antigen; CD244, CD48, NK cell receptor, X-RAY, immune system;
1.63A {Mus musculus} PDB: 2ptv_A
Length = 110
Score = 37.1 bits (86), Expect = 8e-04
Identities = 13/48 (27%), Positives = 19/48 (39%), Gaps = 3/48 (6%)
Query: 61 DRVK--QVSGTLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTVTAPL 106
RV + +G L I + ED G Y V ++ L V P+
Sbjct: 64 GRVYLEENNGALHISNVRKEDKGTYYMRVLRET-ENELKITLEVFDPV 110
Score = 29.8 bits (67), Expect = 0.35
Identities = 11/25 (44%), Positives = 14/25 (56%)
Query: 184 RIDSVRKEDKGMYQCVIRNEQESAQ 208
I +VRKEDKG Y + E E+
Sbjct: 76 HISNVRKEDKGTYYMRVLRETENEL 100
>3udw_C Poliovirus receptor; PVR tigit IGSF signal transduction immunology,
IGSF, cell SU receptor signalling, glycosylation,
membrane protein; HET: NAG; 2.90A {Homo sapiens}
Length = 118
Score = 37.1 bits (86), Expect = 0.001
Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
Query: 67 SGTLIIKEAKVEDSGKYLC-VVNNSVGGESVETVLTVTAP 105
+ +L + +VED G Y C V G SV+ L V A
Sbjct: 78 NASLRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRVLAK 117
>2e6q_A Obscurin-like protein 1; IG-like domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 112
Score = 36.9 bits (85), Expect = 0.001
Identities = 17/87 (19%), Positives = 25/87 (28%), Gaps = 14/87 (16%)
Query: 30 GESFALLCEAQEN---MWFK------FIEGSSRKVAVPLNDRVKQVSG--TLIIKEAKVE 78
GE + WF E + L R++Q LI+ K +
Sbjct: 23 GEDAVFSLDLSTIIQGTWFLNGEELKSNEPEGQVEPGALRYRIEQKGLQHRLILHAVKHQ 82
Query: 79 DSGKYLCVVNNSVGGESVETVLTVTAP 105
DSG + G LT+
Sbjct: 83 DSGALVGFS---CPGVQDSAALTIQES 106
Score = 28.4 bits (63), Expect = 0.89
Identities = 9/47 (19%), Positives = 17/47 (36%), Gaps = 2/47 (4%)
Query: 221 PPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNAER 267
+ D + G + F S W+L+G++L + E
Sbjct: 8 TARLVAGLEDVQVYDGEDAVFSLDLSTIIQGT--WFLNGEELKSNEP 52
Score = 28.4 bits (63), Expect = 1.1
Identities = 13/101 (12%), Positives = 28/101 (27%), Gaps = 30/101 (29%)
Query: 136 AAGVEPTVQ--------TIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHNEPVF---- 183
++G T + + G A F+ +W +G+ + +
Sbjct: 2 SSGSSGTARLVAGLEDVQVYDGEDAVFSLDLSTII--QGTWFLNGEELKSNEPEGQVEPG 59
Query: 184 ---------------RIDSVRKEDKGMY-QCVIRNEQESAQ 208
+ +V+ +D G Q+SA
Sbjct: 60 ALRYRIEQKGLQHRLILHAVKHQDSGALVGFSCPGVQDSAA 100
>1sq2_N Novel antigen receptor; immunoglobulin fold, protein-protein
complex, hydrolase/immune system complex; 1.45A
{Ginglymostoma cirratum} SCOP: b.1.1.1 PDB: 1t6v_N
Length = 113
Score = 36.6 bits (85), Expect = 0.002
Identities = 21/100 (21%), Positives = 32/100 (32%), Gaps = 29/100 (29%)
Query: 30 GESFALLCEAQENM-------WFKFIEGSSRKV--------AVPLNDRVKQVSGTLIIKE 74
GES + C ++ W++ G + +N K S L I +
Sbjct: 15 GESLTINCVLRDASYALGSTCWYRKKSGEGNEESISKGGRYVETVNSGSKSFS--LRIND 72
Query: 75 AKVEDSGKYLCVVNNSVGGESVE------------TVLTV 102
VED G Y C + + G T +TV
Sbjct: 73 LTVEDGGTYRCGLGVAGGYCDYALCSSRYAECGDGTAVTV 112
>1zox_A CLM-1; IG-superfamily, IG-V, NKP44-like, myeloid IG-like receptor,
structural genomics, PSI, protein structure initiative;
2.10A {Mus musculus}
Length = 113
Score = 36.2 bits (84), Expect = 0.002
Identities = 6/45 (13%), Positives = 19/45 (42%)
Query: 59 LNDRVKQVSGTLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTVT 103
+ D + T+ +++ ++ D+G Y C + + + +
Sbjct: 65 IRDNQRDFIFTVTMEDLRMSDAGIYWCGITKGGLDPMFKVTVNIG 109
>1neu_A Myelin P0 protein; structural protein, glycoprotein, transmembrane,
phosphorylation, immunoglobulin fold, signal; 1.90A
{Rattus norvegicus} SCOP: b.1.1.1
Length = 124
Score = 36.1 bits (83), Expect = 0.002
Identities = 14/76 (18%), Positives = 28/76 (36%), Gaps = 9/76 (11%)
Query: 38 EAQENMWFKFIEGSS-RKVAVPLNDRVKQVS------GTLIIKEAKVEDSGKYLCVVNNS 90
F + +G +R++ V G+++I D+G + C V N
Sbjct: 44 GRDAISIFHYAKGQPYIDEVGTFKERIQWVGDPSWKDGSIVIHNLDYSDNGTFTCDVKNP 103
Query: 91 --VGGESVETVLTVTA 104
+ G++ + L V
Sbjct: 104 PDIVGKTSQVTLYVFE 119
Score = 31.9 bits (72), Expect = 0.079
Identities = 6/32 (18%), Positives = 15/32 (46%)
Query: 184 RIDSVRKEDKGMYQCVIRNEQESAQASGELKL 215
I ++ D G + C ++N + + ++ L
Sbjct: 84 VIHNLDYSDNGTFTCDVKNPPDIVGKTSQVTL 115
>3r0n_A Poliovirus receptor-related protein 2; IG-domain, cell-adhesion
molecule, virus entry receptor, STR genomics,
PSI-biology; 1.30A {Homo sapiens}
Length = 128
Score = 36.1 bits (83), Expect = 0.003
Identities = 12/37 (32%), Positives = 13/37 (35%), Gaps = 1/37 (2%)
Query: 67 SGTLIIKEAKVEDSGKYLCVVNNSVGG-ESVETVLTV 102
TL + VED G Y C G T L V
Sbjct: 92 DATLALHGLTVEDEGNYTCEFATFPKGSVRGMTWLRV 128
Score = 25.7 bits (56), Expect = 9.7
Identities = 5/15 (33%), Positives = 8/15 (53%)
Query: 184 RIDSVRKEDKGMYQC 198
+ + ED+G Y C
Sbjct: 96 ALHGLTVEDEGNYTC 110
>1qfo_A Protein (sialoadhesin); immunoglobulin superfamily, carbohydrate
binding, immune system; HET: SIA GAL GLC; 1.85A {Mus
musculus} SCOP: b.1.1.1 PDB: 1od7_A* 1oda_A* 1od9_A*
1qfp_A 2bve_A* 1url_A*
Length = 119
Score = 35.6 bits (82), Expect = 0.004
Identities = 17/79 (21%), Positives = 27/79 (34%), Gaps = 18/79 (22%)
Query: 43 MWFK---------FIEGSSRKVAVPLNDRVK------QVSGTLIIKEAKVEDSGKYLCVV 87
+W+ G + V R + L++K+ K EDSG Y
Sbjct: 39 IWYYDYSGKRQVVIHSGDPKLVDKRFRGRAELMGNMDHKVCNLLLKDLKPEDSGTYNFRF 98
Query: 88 NNSVGGESVE---TVLTVT 103
S ++ T +TVT
Sbjct: 99 EISDSNRWLDVKGTTVTVT 117
>3nfj_J T cell receptor beta chain; immunoglobulin family, immune system;
2.68A {Homo sapiens} PDB: 3hg1_E
Length = 245
Score = 36.8 bits (85), Expect = 0.004
Identities = 31/136 (22%), Positives = 43/136 (31%), Gaps = 34/136 (25%)
Query: 69 TLIIKEAKVEDSGKYLCVVNNSVGGESVE------TVLTVTAPLAAGVEPTVQTIDFGRP 122
L K+ + DSG YLC + SVG + LTV L P V
Sbjct: 75 ILSSKKLLLSDSGFYLCAWSVSVGAGVPTIYFGEGSWLTVVEDLNKVFPPEV-------- 126
Query: 123 AQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTC---KYEGNPVKTISWMKDGKPVPD-- 177
A EP+ I + A C + + V +SW +GK V
Sbjct: 127 --------------AVFEPSEAEISHTQKATLVCLATGFFPDHV-ELSWWVNGKEVHSGV 171
Query: 178 HNEPVFRIDSVRKEDK 193
+P + D
Sbjct: 172 CTDPQPLKEQPALNDS 187
>3noi_A Natural cytotoxicity triggering receptor 3; immune system, innate
immunity, immunoglobulin-like I2 type natural killer
cell activation; HET: 1PG; 1.84A {Homo sapiens} PDB:
3pv6_B*
Length = 120
Score = 35.3 bits (81), Expect = 0.004
Identities = 14/59 (23%), Positives = 22/59 (37%), Gaps = 6/59 (10%)
Query: 49 EGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYLCVVNNSVGGESVE----TVLTVT 103
E R + + + L I++ + D+ Y+C V V G V T L V
Sbjct: 62 EFRGRLAPLASSRFLHDHQAELHIRDVRGHDASIYVCRV--EVLGLGVGTGNGTRLVVE 118
Score = 26.8 bits (59), Expect = 3.4
Identities = 19/106 (17%), Positives = 37/106 (34%), Gaps = 17/106 (16%)
Query: 100 LTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTI----DFGRPAQFT 155
L V+ P P ++T++ G A C + S + ++ D P +
Sbjct: 9 LWVSQP------PEIRTLE-GSSAFLPCSFNASQG-----RLAIGSVTWFRDEVVPGKEV 56
Query: 156 CKYEGNPVKTISWMKDGKPVPDHNEPVFRIDSVRKEDKGMYQCVIR 201
++ + + + DH + I VR D +Y C +
Sbjct: 57 RNGTPEFRGRLAPLASSRFLHDHQAEL-HIRDVRGHDASIYVCRVE 101
>1eaj_A Coxsackie virus and adenovirus receptor; virus/viral protein
receptor, immunoglobulin V domain fold, symmetric dimer;
1.35A {Homo sapiens} SCOP: b.1.1.1 PDB: 1f5w_A 2j12_B
2j1k_A 2wbw_B* 2w9l_A* 1rsf_A 1jew_R 1kac_B 1p69_B
1p6a_B
Length = 126
Score = 35.6 bits (82), Expect = 0.004
Identities = 22/126 (17%), Positives = 43/126 (34%), Gaps = 20/126 (15%)
Query: 100 LTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEISPPLAAG--VEPTVQTIDFGRPAQFTCK 157
L++T P E ++ G A CK+ +SP +E + D + Q
Sbjct: 6 LSITTP-----EEMIEKA-KGETAYLPCKFTLSPEDQGPLDIEWLISPADNQKVDQVIIL 59
Query: 158 YEGNPVKT---------ISWMKDGKPVPDHNEPVFRIDSVRKEDKGMYQCVIRNEQESAQ 208
Y G+ + + + + + + +++ D G YQC ++ A
Sbjct: 60 YSGDKIYDDYYPDLKGRVHFTSND---LKSGDASINVTNLQLSDIGTYQCKVKKAPGVAN 116
Query: 209 ASGELK 214
L
Sbjct: 117 KKIHLV 122
Score = 35.2 bits (81), Expect = 0.005
Identities = 9/44 (20%), Positives = 20/44 (45%)
Query: 59 LNDRVKQVSGTLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTV 102
++ +K ++ + ++ D G Y C V + G + + L V
Sbjct: 80 TSNDLKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKIHLVV 123
>1iga_A IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg_A 2qtj_A 3chn_A
1r70_B 3cm9_A
Length = 475
Score = 36.5 bits (84), Expect = 0.008
Identities = 19/136 (13%), Positives = 30/136 (22%), Gaps = 12/136 (8%)
Query: 66 VSGTLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQF 125
S L + + C V + TV P+
Sbjct: 188 TSSQLTLPATQCLAGKSVTCHVKHYTNPSQDVTVPCPVPSTPPTPSPSTPP--------- 238
Query: 126 TCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEG---NPVKTISWMKDGKPVPDHNEPV 182
T P + P ++ + G A TC G T +W P
Sbjct: 239 TPSPSCCHPRLSLHRPALEDLLLGSEANLTCTLTGLRDASGVTFTWTPSSGKSAVQGPPE 298
Query: 183 FRIDSVRKEDKGMYQC 198
+ + C
Sbjct: 299 RDLCGCYSVSSVLPGC 314
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 36.6 bits (84), Expect = 0.008
Identities = 26/131 (19%), Positives = 47/131 (35%), Gaps = 42/131 (32%)
Query: 30 GE-SFALLCEAQENMWFK------FIEGSSRKVAVPLNDRVKQVSGTLIIKEAKV----- 77
GE + AL A + M + F G + +VAVP ++ + G + I +V
Sbjct: 1765 GEYA-ALASLA-DVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFS 1822
Query: 78 ------------EDSGKYLCVVN-NS------VGGE--SVETVLTVTAPLAAGVEPTVQT 116
+ +G + +VN N G+ +++TV V + +Q
Sbjct: 1823 QEALQYVVERVGKRTGWLVEIVNYNVENQQYVAAGDLRALDTVTNVLNFIK------LQK 1876
Query: 117 IDFGR-PAQFT 126
ID +
Sbjct: 1877 IDIIELQKSLS 1887
Score = 31.9 bits (72), Expect = 0.28
Identities = 8/56 (14%), Positives = 18/56 (32%), Gaps = 8/56 (14%)
Query: 129 YEISPPLAAGVEPTVQTI-----DFGRPAQFTCKYEGNPVKTISWMKDGKPVPDHN 179
Y+ L V ++ + R K + + W+++ PD +
Sbjct: 177 YQTYHVL---VGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKD 229
Score = 29.2 bits (65), Expect = 1.6
Identities = 27/144 (18%), Positives = 44/144 (30%), Gaps = 48/144 (33%)
Query: 150 RPAQFTCKYEGN-----PVKTISW-----MKDG----KPVP-----DHNEPV-------- 182
RP T + G+ V T S+ +++ P P +EP
Sbjct: 7 RP--LTLSH-GSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGK 63
Query: 183 ---FRIDSVRKEDKGMYQCVIR---NEQESAQASGE------LKLGGRFDPPVIKESFSD 230
+ V G + V+ E E+ G KL D ++K +
Sbjct: 64 FLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVK---TK 120
Query: 231 ETLNPGPNYYFKCIASGNPTPEIS 254
E + NY I + P + S
Sbjct: 121 ELIK---NYITARIMAKRPFDKKS 141
>3kgr_A LAIR-1, hlair1, leukocyte-associated immunoglobulin-like receptor;
IG-like domain, cell membrane, glycoprotein; 1.80A {Homo
sapiens} PDB: 3rp1_A
Length = 106
Score = 34.3 bits (79), Expect = 0.009
Identities = 15/57 (26%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Query: 159 EGNPVKTISWMKDGKPVPDHNEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKL 215
E + + P +E FRIDSV + + G Y+C+ + ++ S L+L
Sbjct: 44 ESRSTYNDTEDV-SQASPSESEARFRIDSVSEGNAGPYRCIYYKPPKWSEQSDYLEL 99
>1ncn_A T lymphocyte activation antigen CD86; IG V, beta strands, immune
system; 2.70A {Homo sapiens} SCOP: b.1.1.1 PDB: 1i85_A
Length = 110
Score = 34.0 bits (78), Expect = 0.012
Identities = 15/84 (17%), Positives = 29/84 (34%), Gaps = 28/84 (33%)
Query: 148 FGRPAQFTCKYEGNPV-----KTISWMK----------DGKPVPDHNEPVF--------- 183
F A C++ + + W GK D +
Sbjct: 8 FNETADLPCQFANSQNQSLSELVVFWQDQENLVLNEVYLGKEKFDSVHSKYMGRTSFDSD 67
Query: 184 ----RIDSVRKEDKGMYQCVIRNE 203
R+ +++ +DKG+YQC+I ++
Sbjct: 68 SWTLRLHNLQIKDKGLYQCIIHHK 91
Score = 32.9 bits (75), Expect = 0.031
Identities = 11/51 (21%), Positives = 22/51 (43%), Gaps = 7/51 (13%)
Query: 61 DRVKQVSG--TLIIKEAKVEDSGKYLCVVNNSVGGESV-----ETVLTVTA 104
R S TL + +++D G Y C++++ + + L+V A
Sbjct: 60 GRTSFDSDSWTLRLHNLQIKDKGLYQCIIHHKKPTGMIRIHQMNSELSVLA 110
>3to4_D NKT vbeta2 (mouse variable domain, human constant; mouse CD1D,
mouse NKT, immune system; HET: AGH NAG; 3.10A {Homo
sapiens}
Length = 253
Score = 35.3 bits (81), Expect = 0.012
Identities = 23/138 (16%), Positives = 38/138 (27%), Gaps = 34/138 (24%)
Query: 67 SGTLIIKEAKVEDSGKYLCVVNNSVGGESVE------TVLTVTAPLAAGVEPTVQTIDFG 120
L ++ A + C + + + + LTV L P V
Sbjct: 73 DTELRLQVANMSQGRTLYCTSSADHWTNTGQLYFGEGSKLTVLEDLKNVFPPEV------ 126
Query: 121 RPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTC---KYEGNPVKTISWMKDGKPVPD 177
A EP+ I + A C + + V +SW +GK V
Sbjct: 127 ----------------AVFEPSEAEISHTQKATLVCLATGFYPDHV-ELSWWVNGKEVHS 169
Query: 178 --HNEPVFRIDSVRKEDK 193
+P + D
Sbjct: 170 GVSTDPQPLKEQPALNDS 187
>3l5h_A Interleukin-6 receptor subunit beta; IG-like, FNIII, cell membrane,
disulfide bond, glycoprotein, immunoglobulin domain,
membrane, phosphoprotein; HET: NAG NDG BMA FUC; 3.60A
{Homo sapiens}
Length = 589
Score = 35.8 bits (82), Expect = 0.012
Identities = 14/152 (9%), Positives = 25/152 (16%), Gaps = 42/152 (27%)
Query: 110 VEPTVQTIDFGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEGNPVKTISWM 169
+ P + C + V I W
Sbjct: 8 ISPESPVVQLHSNFTAVCVLKEKCMDYFHV----------------------NANYIVWK 45
Query: 170 KDGKPVPDHNEPVFRIDSVR------KEDKGMYQCVIRNEQESAQASGELKLGGRFDPPV 223
+ +P + + C I + Q + +
Sbjct: 46 TNHFTIPKEQYTIINRTASSVTFTDIASLNIQLTCNILTFGQLEQNVYGITI-------- 97
Query: 224 IKESFSDETLNPGPNYYFKCIASGNPTPEISW 255
L P CI + W
Sbjct: 98 ------ISGLPPEKPKNLSCIVNEGKKMRCEW 123
>1ypz_E T cell receptor delta, beta-2-microglobulin; H2-T22 protein, T cell
receptor delta, immune system; HET: NAG MAN FUC; 3.40A
{Mus musculus} SCOP: b.1.1.1 b.1.1.2
Length = 207
Score = 34.5 bits (79), Expect = 0.016
Identities = 27/117 (23%), Positives = 36/117 (30%), Gaps = 24/117 (20%)
Query: 69 TLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCK 128
TL I++A++EDSG Y C + E E T G + TV
Sbjct: 72 TLHIRDAQLEDSGTYFCAADTWHISEGYELG-TDKLVFGQGTQVTV-------------- 116
Query: 129 YEISPPLAAGVEPTVQTIDFGRPAQFTC---KYEGNPVKTISWMKDGKPVPDHNEPV 182
P +P+V C + V TIS K V V
Sbjct: 117 ---EPKSQPPAKPSVFI--MKNGTNVACLVKDFYPKEV-TISLRSSKKIVEFDPAIV 167
>2ol3_A BM3.3 T-cell receptor alpha-chain; T cell receptor, class I MHC,
H-2KBM8, TCR-PMHC complex, IMM system; HET: NAG; 2.90A
{Mus musculus} SCOP: b.1.1.1
Length = 142
Score = 33.9 bits (78), Expect = 0.017
Identities = 16/54 (29%), Positives = 23/54 (42%), Gaps = 7/54 (12%)
Query: 67 SGTLIIKEAKVEDSGKYLCVVNNSVGGESVE------TVLTVTAPLAAGVEPTV 114
S LII ++EDS Y C + GG + T+L+V P +A
Sbjct: 73 SIGLIITATQIEDSAVYFCAMRGDYGGSGNKLIFGTGTLLSVK-PGSADDAKKD 125
>1xiw_B T-cell surface glycoprotein CD3 delta chain; CD3-epsilon,
CD3-delta, UCHT1-SCFV, immunoglobulin fold,
antibody-antigen complex; 1.90A {Homo sapiens} SCOP:
b.1.1.4
Length = 79
Score = 32.6 bits (74), Expect = 0.017
Identities = 5/35 (14%), Positives = 15/35 (42%)
Query: 164 KTISWMKDGKPVPDHNEPVFRIDSVRKEDKGMYQC 198
+I+W++ + + + +G+Y+C
Sbjct: 18 TSITWVEGTVGTLLSDITRLDLGKRILDPRGIYRC 52
>1fo0_A Protein (BM3.3 T cell receptor alpha-chain); class I MHC, H-2KB,
TCR-PMHC complex, immune system; 2.50A {Mus musculus}
SCOP: b.1.1.1 PDB: 1nam_A*
Length = 116
Score = 33.4 bits (77), Expect = 0.017
Identities = 11/27 (40%), Positives = 14/27 (51%)
Query: 67 SGTLIIKEAKVEDSGKYLCVVNNSVGG 93
S LII ++EDS Y C + GG
Sbjct: 73 SIGLIITATQIEDSAVYFCAMRGDYGG 99
>4ety_A LAIR-1, mlair1, leukocyte-associated immunoglobulin-like receptor;
IG-like domain, extra celluar domain, domain swappin
nysgrc, structural genomics; 1.90A {Mus musculus}
Length = 118
Score = 33.6 bits (77), Expect = 0.018
Identities = 18/71 (25%), Positives = 25/71 (35%), Gaps = 9/71 (12%)
Query: 167 SWMKDGKPVPDHNEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLGGRFDPPVIKE 226
S + P E F I V + G Y C+ ++ S L+L VIKE
Sbjct: 49 STFMEKSTEPYKTEDEFEIGPVNETITGHYSCIYSKGITWSERSKTLEL------KVIKE 102
Query: 227 SFSDETLNPGP 237
+ P P
Sbjct: 103 NVIQT---PAP 110
>3o3u_N Maltose-binding periplasmic protein, advanced Gly END
product-specific receptor; RAGE, AGER, scavenger
receptor; HET: MLR; 1.50A {Escherichia coli} PDB: 3cjj_A
2l7u_A* 2e5e_A
Length = 581
Score = 34.9 bits (80), Expect = 0.021
Identities = 44/183 (24%), Positives = 72/183 (39%), Gaps = 23/183 (12%)
Query: 92 GGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFTCKYEIS-PPLAAGVEPTVQTIDFGR 150
G ++V+ L AA T G P CK PP +
Sbjct: 353 GRQTVDAALAAAQTNAAAASAQNITARIGEPLVLKCKGAPKKPPQRLEWK---LNTGRTE 409
Query: 151 PAQFTCKYEGNPVKTISWMKDGKPVPDHNEPVFRIDSVRKEDKGMYQCVIRN----EQES 206
+ G P W + +P+ + + +V +D+G+++C N E +S
Sbjct: 410 AWKVLSPQGGGP-----WDSVARVLPNGSL---FLPAVGIQDEGIFRCQAMNRNGKETKS 461
Query: 207 AQASGELKLGGRFDPPVIKESFSDETLNPG-PNYYFKCIASGN-PTPEISWYLDGKKLVN 264
++ G+ P I +S S+ L G PN C++ G+ P +SW+LDGK LV
Sbjct: 462 NYRVRVYQIPGK---PEIVDSASE--LTAGVPNKVGTCVSEGSYPAGTLSWHLDGKPLVP 516
Query: 265 AER 267
E+
Sbjct: 517 NEK 519
>1hkf_A NKP44, NK cell activating receptor; natural cytotoxicity receptor,
immunoglobulin domain; 2.2A {Homo sapiens} SCOP: b.1.1.1
Length = 122
Score = 33.4 bits (76), Expect = 0.023
Identities = 11/58 (18%), Positives = 21/58 (36%), Gaps = 3/58 (5%)
Query: 49 EGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYLCVVNNSVGGESVETV---LTVT 103
+ + D T+ + + + EDSG Y C + ++V L V+
Sbjct: 65 RTMAWTSRFTIWDDPDAGFFTVTMTDLREEDSGHYWCRIYRPSDNSVSKSVRFYLVVS 122
>2vsd_A CHIR AB1; immune system receptor, FC receptor; HET: NAG NDG MAN;
1.82A {Gallus gallus}
Length = 105
Score = 33.1 bits (76), Expect = 0.023
Identities = 12/61 (19%), Positives = 16/61 (26%), Gaps = 7/61 (11%)
Query: 144 QTIDFGRPAQFTCKYEGNPVKTISWMKDGKPVPD------HNEPVFRIDSVRKEDKGMYQ 197
Q + G C + +G D + F ED G YQ
Sbjct: 14 QGVSLGDTVTLRCHLP-RMAAWVQLWLNGTLRFDKEKDKEQDAAEFSFAVTNLEDAGTYQ 72
Query: 198 C 198
C
Sbjct: 73 C 73
Score = 27.0 bits (60), Expect = 2.7
Identities = 12/58 (20%), Positives = 23/58 (39%), Gaps = 5/58 (8%)
Query: 30 GESFALLCEA-QENMWFK-FIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYLC 85
G++ L C + W + ++ G+ R +Q + +ED+G Y C
Sbjct: 19 GDTVTLRCHLPRMAAWVQLWLNGTLR---FDKEKDKEQDAAEFSFAVTNLEDAGTYQC 73
>2oyp_A Hepatitis A virus cellular receptor 2; TIM-3, T-cell immunoglobulin
mucin, signaling protein; 1.95A {Mus musculus} PDB:
3kaa_A*
Length = 109
Score = 33.0 bits (75), Expect = 0.027
Identities = 11/46 (23%), Positives = 21/46 (45%), Gaps = 2/46 (4%)
Query: 59 LNDRVKQVSGTLIIKEAKVEDSGKYLCVVNNS--VGGESVETVLTV 102
L + + +LIIK ++D G Y C + + + +E L +
Sbjct: 63 LKGDLNKGDVSLIIKNVTLDDHGTYCCRIQFPGLMNDKKLELKLDI 108
Score = 30.7 bits (69), Expect = 0.18
Identities = 19/98 (19%), Positives = 26/98 (26%), Gaps = 31/98 (31%)
Query: 149 GRPAQFTCKYEG---NPVKTISWMKDGKPVPDHNEPVFR--------------------- 184
G+ A C Y + + W K P + R
Sbjct: 9 GKNAYLPCSYTLPTSGTLVPMCWGKGFCPWSQCTNELLRTDERNVTYQKSSRYQLKGDLN 68
Query: 185 -------IDSVRKEDKGMYQCVIRNEQESAQASGELKL 215
I +V +D G Y C I+ ELKL
Sbjct: 69 KGDVSLIIKNVTLDDHGTYCCRIQFPGLMNDKKLELKL 106
>2pkd_A SLAM family member 5; signaling lymphocyte activation molecule,
IGV, immunoglobulin variable, IGC, immunoglobulin
constant, signaling protein; 2.04A {Homo sapiens}
Length = 111
Score = 33.0 bits (75), Expect = 0.028
Identities = 9/46 (19%), Positives = 20/46 (43%), Gaps = 4/46 (8%)
Query: 61 DRVK--QVSGTLIIKEAKVEDSGKYLCVVNNSVGGESV--ETVLTV 102
+R+ + L+I + ++ED+G Y +N + L +
Sbjct: 63 ERIHALGPNYNLVISDLRMEDAGDYKADINTQADPYTTTKRYNLQI 108
>2q87_A CMRF35-H antigen; all-beta, immunoglobulin, IG-superfamily, IG-V,
NKP44-like, natural killer cell IG-like receptor,
inhibitory receptor; 1.70A {Homo sapiens}
Length = 110
Score = 32.5 bits (74), Expect = 0.031
Identities = 12/49 (24%), Positives = 20/49 (40%), Gaps = 4/49 (8%)
Query: 59 LNDRVKQVSGTLIIKEAKVEDSGKYLCVV----NNSVGGESVETVLTVT 103
+ D +S T+ ++ ED+G Y C V VE ++V
Sbjct: 59 IRDSPANLSFTVTLENLTEEDAGTYWCGVDTPWLQDFHDPVVEVEVSVF 107
>4esk_A LAIR-1, mlair1, leukocyte-associated immunoglobulin-like receptor;
IG-like domain, domain swapping, collagen receptor,
structural genomics; 1.76A {Mus musculus}
Length = 102
Score = 32.3 bits (74), Expect = 0.033
Identities = 12/49 (24%), Positives = 18/49 (36%)
Query: 167 SWMKDGKPVPDHNEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKL 215
S + P E F I V + G Y C+ ++ S L+L
Sbjct: 49 STFMEKSTEPYKTEDEFEIGPVNETITGHYSCIYSKGITWSERSKTLEL 97
>2wqr_A IG epsilon chain C region; immune system, immunoglobulin domain,
glycoprotein; HET: NAG BMA MAN PG4; 1.90A {Homo sapiens}
PDB: 2y7q_B* 1o0v_A* 3h9y_A* 3h9z_A* 3ha0_A* 1fp5_A
1f6a_B 1g84_A
Length = 323
Score = 34.3 bits (78), Expect = 0.036
Identities = 22/165 (13%), Positives = 41/165 (24%), Gaps = 30/165 (18%)
Query: 127 CKYEISPP----LAAGVEPTVQTIDFGRPAQFTCKYEG---NPVKTISWMKDGKPVPDHN 179
C + +PP L F Q C G + I+W++DG+ +
Sbjct: 1 CSRDFTPPTVKILQ---SSCDGGGHFPPTIQLLCLVSGYTPGTI-QITWLEDGQVMDVDL 56
Query: 180 EP--------------VFRIDSVRKEDKGMYQCVIRNEQESAQASGELK-LGGRFDPPVI 224
+ Y C + + + + S +
Sbjct: 57 STASTTQEGELASTQSELTLSQKHWLSDRTYTCQVTYQGHTFEDSTKKCADSNPRGVSAY 116
Query: 225 KESFSDETLNPGPNYYFKCIASGNPTPE----ISWYLDGKKLVNA 265
S L + C+ + ++W K VN
Sbjct: 117 LSRPSPFDLFIRKSPTITCLVVDLAPSKGTVQLTWSRASGKPVNH 161
>2frg_P TREM-like transcript-1; immunoglobulin-like, beta-sandwich, cell
surface receptor, triggering receptor, platelet
receptor, ITIM, immune system; 1.19A {Homo sapiens}
Length = 106
Score = 32.5 bits (74), Expect = 0.037
Identities = 10/38 (26%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Query: 69 TLIIKEAKVEDSGKYLCVVNNSVGGESVETV-LTVTAP 105
+ + + ED+G+Y C+V+ + G + + V L + P
Sbjct: 69 QVEMVTLQEEDAGEYGCMVDGARGPQILHRVSLNILPP 106
>2or7_A T-cell immunoglobulin and mucin domain- containing protein 2; beta
barrel, immunoglobulin fold, IGV domain, TIM, immune
system; 1.50A {Mus musculus}
Length = 115
Score = 32.6 bits (74), Expect = 0.041
Identities = 13/45 (28%), Positives = 20/45 (44%)
Query: 59 LNDRVKQVSGTLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTVT 103
L + + + +L I+ V D G Y CVV V+ +L V
Sbjct: 65 LKGNISEGNVSLTIENTVVGDGGPYCCVVEIPGAFHFVDYMLEVK 109
Score = 28.0 bits (62), Expect = 1.7
Identities = 11/83 (13%), Positives = 18/83 (21%), Gaps = 30/83 (36%)
Query: 149 GRPAQFTCKYEGNP--VKTISWMKDGKPVPDHNEPVFR---------------------- 184
G P C Y + + + W +
Sbjct: 12 GHPVTLPCIYSTHLGGIVPMCWGLGECRHSYCIRSLIWTNGYTVTHQRNSRYQLKGNISE 71
Query: 185 ------IDSVRKEDKGMYQCVIR 201
I++ D G Y CV+
Sbjct: 72 GNVSLTIENTVVGDGGPYCCVVE 94
>1h5b_A Murine T cell receptor (TCR) valpha domain; immune response,
immunoglobulin fold; 1.85A {Mus musculus} SCOP: b.1.1.1
PDB: 1h5b_C 1h5b_B
Length = 113
Score = 32.3 bits (74), Expect = 0.044
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 69 TLIIKEAKVEDSGKYLCVVNNSVGGE 94
TL I++A++EDSG Y C S G
Sbjct: 72 TLHIRDAQLEDSGTYFCAAEASSGSW 97
>2gj7_F Glycoprotein E; FC receptor, low resolution, immune
system-virus-viral prote complex; HET: NAG BMA MAN GAL
FUC; 5.00A {Human herpesvirus 1} SCOP: b.1.1.1
Length = 401
Score = 33.9 bits (76), Expect = 0.050
Identities = 15/89 (16%), Positives = 26/89 (29%)
Query: 53 RKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTVTAPLAAGVEP 112
+ +R V+ +L+I + DSG Y V + + + A P
Sbjct: 90 LRTDFVWQERAAVVNRSLVIHGVRETDSGLYTLSVGDIKDPARQVASVVLVVQPAPVPTP 149
Query: 113 TVQTIDFGRPAQFTCKYEISPPLAAGVEP 141
D+ + E A P
Sbjct: 150 PPTPADYDEDDNDEGEDESLAGTPASGTP 178
>1olz_A Semaphorin 4D; developmental protein, CD100, beta-propeller, PSI
domain, IG-like domain, extracellular receptor,
neurogenesis; 2.0A {Homo sapiens} SCOP: b.1.1.4
b.69.12.1 g.16.2.1 PDB: 3ol2_A*
Length = 663
Score = 34.0 bits (76), Expect = 0.058
Identities = 19/95 (20%), Positives = 30/95 (31%), Gaps = 13/95 (13%)
Query: 32 SFALLCEAQENM----WFKFIEGSSRKVAVPLNDRVKQVSGTLIIKEAKVEDSGKYLCV- 86
+ L C + N+ W + + L+I DSG Y C+
Sbjct: 550 TAELKCSQKSNLARVFWKF----QNGVLKAESPKYGLMGRKNLLIFNLSEGDSGVYQCLS 605
Query: 87 ----VNNSVGGESVETVLTVTAPLAAGVEPTVQTI 117
N +V + VL V V PT+ +
Sbjct: 606 EERVKNKTVFQVVAKHVLEVKVVPKPVVAPTLSVV 640
Score = 31.3 bits (69), Expect = 0.34
Identities = 11/59 (18%), Positives = 21/59 (35%), Gaps = 8/59 (13%)
Query: 148 FGRPAQFTCKYEGNPVKTISWMKDGKPVPDHN-------EPVFRIDSVRKEDKGMYQCV 199
G A+ C + N + W + + I ++ + D G+YQC+
Sbjct: 547 HGGTAELKCSQKSNLA-RVFWKFQNGVLKAESPKYGLMGRKNLLIFNLSEGDSGVYQCL 604
>2or8_A Hepatitis A virus cellular receptor 1 homolog; beta barrel,
immunoglobulin fold, IGV domain, TIM, immune system;
2.50A {Mus musculus}
Length = 116
Score = 31.8 bits (72), Expect = 0.061
Identities = 12/49 (24%), Positives = 18/49 (36%), Gaps = 2/49 (4%)
Query: 59 LNDRVKQVSGTLIIKEAKVEDSGKYLCVVNNS--VGGESVETVLTVTAP 105
L + + +L I+ + DSG Y C V + V L V
Sbjct: 64 LKGHISEGDVSLTIENSVESDSGLYCCRVEIPGWFNDQKVTFSLQVKPE 112
Score = 29.1 bits (65), Expect = 0.57
Identities = 13/96 (13%), Positives = 21/96 (21%), Gaps = 29/96 (30%)
Query: 149 GRPAQFTCKYEGNP-VKTISWMKDGKPVPDHNEPVF------------------------ 183
G P C Y + T W + P +
Sbjct: 12 GHPVTLPCTYSTYRGITTTCWGRGQCPSSACQNTLIWTNGHRVTYQKSSRYNLKGHISEG 71
Query: 184 ----RIDSVRKEDKGMYQCVIRNEQESAQASGELKL 215
I++ + D G+Y C + L
Sbjct: 72 DVSLTIENSVESDSGLYCCRVEIPGWFNDQKVTFSL 107
>1q8m_A Triggering receptor expressed on myeloid cells 1; V-type IG-like
domain, immunoglobulin-like, immune system receptor;
HET: GSH; 2.60A {Homo sapiens} SCOP: b.1.1.1
Length = 127
Score = 32.1 bits (73), Expect = 0.067
Identities = 11/38 (28%), Positives = 15/38 (39%), Gaps = 3/38 (7%)
Query: 69 TLIIKEAKVEDSGKYLCVVNNS---VGGESVETVLTVT 103
+ + +VEDSG Y CV+ L VT
Sbjct: 82 RVRMVNLQVEDSGLYQCVIYQPPKEPHMLFDRIRLVVT 119
Score = 27.5 bits (61), Expect = 2.3
Identities = 8/18 (44%), Positives = 13/18 (72%)
Query: 185 IDSVRKEDKGMYQCVIRN 202
+ +++ ED G+YQCVI
Sbjct: 85 MVNLQVEDSGLYQCVIYQ 102
>1nko_A Sialic acid binding IG-like lectin 7; immunoglobulin, siglec7,
immune system; 1.45A {Homo sapiens} SCOP: b.1.1.1 PDB:
2g5r_A* 1o7v_A* 2df3_A* 1o7s_A* 2hrl_A*
Length = 132
Score = 32.2 bits (73), Expect = 0.068
Identities = 17/82 (20%), Positives = 30/82 (36%), Gaps = 20/82 (24%)
Query: 43 MWFKFIEGSSRKVAVPLNDRVKQV-----------------SGTLIIKEAKVEDSGKYLC 85
WF+ S K V N+ V + TL I++A++ D+G+Y
Sbjct: 46 YWFRAGNDISWKAPVATNNPAWAVQEETRDRFHLLGDPQTKNCTLSIRDARMSDAGRYFF 105
Query: 86 VVNNSVGGESVE---TVLTVTA 104
+ + + + VTA
Sbjct: 106 RMEKGNIKWNYKYDQLSVNVTA 127
>4ei6_B Vbeta16 XV19 type II natural killer T cell recept variable domain,
human constant...; natural killer T cell receptor,
immune system; 1.60A {Mus musculus} PDB: 4ei5_D 4elk_B
4elm_F* 2esv_E 3ffc_E 3utt_E 3utp_E* 3uts_E 3qjf_B
3qjh_B 3qiw_D* 3qiu_D
Length = 245
Score = 33.1 bits (75), Expect = 0.068
Identities = 25/120 (20%), Positives = 35/120 (29%), Gaps = 24/120 (20%)
Query: 62 RVKQVSGTLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGR 121
R TL I+ +EDS Y C + Q G
Sbjct: 70 RPDGSYFTLKIQPTALEDSAVYFCASSFWGAY-------------------AEQFFGPGT 110
Query: 122 PAQFTC-KYEISPPLAAGVEPTVQTIDFGRPAQFTC---KYEGNPVKTISWMKDGKPVPD 177
+ PP A EP+ I + A C + + V +SW +GK V
Sbjct: 111 RLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHV-ELSWWVNGKEVHS 169
>1bec_A 14.3.D T cell antigen receptor; T cell receptor; 1.70A {Mus
musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1jck_A 1l0x_A
1sbb_A 1l0y_A 3c6l_B 1mwa_B* 1g6r_B* 1tcr_B* 2ckb_B
2q86_B* 1lp9_F 2j8u_F 2jcc_F 2uwe_F 3mbe_D* 1d9k_B*
2aq3_A 3mc0_A 3byt_A 3bzd_A ...
Length = 238
Score = 33.0 bits (75), Expect = 0.072
Identities = 26/141 (18%), Positives = 43/141 (30%), Gaps = 28/141 (19%)
Query: 62 RVKQVSGTLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGR 121
R Q +LI++ A + Y C G + + R
Sbjct: 66 RPSQEQFSLILELATPSQTSVYFCASGGGRGSYAEQFFG-----------------PGTR 108
Query: 122 PAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTC---KYEGNPVKTISWMKDGKPVPD- 177
+++PP + EP+ I + A C + + V +SW +GK V
Sbjct: 109 LTVLEDLRQVTPPKVSLFEPSKAEIANKQKATLVCLARGFFPDHV-ELSWWVNGKEVHSG 167
Query: 178 -HNEPVFRIDSVRKEDKGMYQ 197
+P KE Y
Sbjct: 168 VSTDP-----QAYKESNYSYC 183
>1smo_A Triggering receptor expressed on myeloid cells 1; activating
receptors, TREM-1, innate immune system receptor,
system; HET: TLA; 1.47A {Homo sapiens} SCOP: b.1.1.1
Length = 119
Score = 31.7 bits (72), Expect = 0.077
Identities = 14/70 (20%), Positives = 21/70 (30%), Gaps = 9/70 (12%)
Query: 44 WFKFIEGSSRKVAVPLNDRV------KQVSGTLIIKEAKVEDSGKYLCVVNNSVGGESV- 96
E S+ R+ + + +VEDSG Y CV+ +
Sbjct: 46 TLACTERPSKNSHPVQVGRIILEDYHDHGLLRVRMVNLQVEDSGLYQCVIYQPPKEPHML 105
Query: 97 --ETVLTVTA 104
L VT
Sbjct: 106 FDRIRLVVTK 115
Score = 26.7 bits (59), Expect = 4.3
Identities = 9/19 (47%), Positives = 14/19 (73%)
Query: 184 RIDSVRKEDKGMYQCVIRN 202
R+ +++ ED G+YQCVI
Sbjct: 79 RMVNLQVEDSGLYQCVIYQ 97
>3p73_B Beta-2-microglobulin; IG-like C1-type (immunoglobulin-like) domain,
histocompatibi antigen, immune system; HET: 16A; 1.32A
{Gallus gallus} PDB: 3p77_B* 3bev_B 3bew_B 3jvg_C*
2yez_B 2yf5_B 2yf6_B 2yf1_B*
Length = 99
Score = 31.1 bits (71), Expect = 0.10
Identities = 14/55 (25%), Positives = 18/55 (32%), Gaps = 7/55 (12%)
Query: 137 AGVEPTVQ-----TIDFGRPAQFTCKYEG--NPVKTISWMKDGKPVPDHNEPVFR 184
A + P VQ G C G P +I+ MKDG P+
Sbjct: 1 ADLTPKVQVYSRFPASAGTKNVLNCFAAGFHPPKISITLMKDGVPMEGAQYSDMS 55
>2wbj_D OB TCR; transmembrane, immune response, T cell receptor, MHC II,
MEM receptor, molecular mimicry, multiple sclerosis,
immune SYS autoimmunity; HET: NAG BMA MAN; 3.00A {Homo
sapiens}
Length = 279
Score = 32.2 bits (73), Expect = 0.13
Identities = 32/136 (23%), Positives = 44/136 (32%), Gaps = 34/136 (25%)
Query: 69 TLIIKEAKVEDSGKYLCVVNNSVGGESVE------TVLTVTAPLAAGVEPTVQTIDFGRP 122
TL + A EDS Y+C + G + E T LTVT L P V
Sbjct: 101 TLTVTSAHPEDSSFYICSARDLTSGANNEQFFGPGTRLTVTEDLKNVFPPEV-------- 152
Query: 123 AQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTC---KYEGNPVKTISWMKDGKPVPD-- 177
A EP+ I + A C + + V +SW +GK V
Sbjct: 153 --------------AVFEPSEAEISHTQKATLVCLATGFYPDHV-ELSWWVNGKEVHSGV 197
Query: 178 HNEPVFRIDSVRKEDK 193
+P + D
Sbjct: 198 STDPQPLKEQPALNDS 213
>1ow0_A IG alpha-1 chain C region; IGA1, fcari, CD89, antibody,
immunoglobulin-LIK immune system; HET: NAG FUL BMA GAL
SIA FUC MAN NDG; 3.10A {Homo sapiens} SCOP: b.1.1.2
b.1.1.2 PDB: 2qej_A*
Length = 214
Score = 31.8 bits (72), Expect = 0.18
Identities = 14/133 (10%), Positives = 30/133 (22%), Gaps = 27/133 (20%)
Query: 66 VSGTLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQF 125
VS L + C + L+ + P V +
Sbjct: 64 VSSVLPGCAEPWNHGKTFTCTAAYPESKTPLTATLSKSGNT---FRPEVHLL-------- 112
Query: 126 TCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEG-NPVK-TISWMKDGKPVPDHNEPVF 183
P + + TC G +P + W++ + +P +
Sbjct: 113 --------------PPPSEELALNELVTLTCLARGFSPKDVLVRWLQGSQELPREKYLTW 158
Query: 184 RIDSVRKEDKGMY 196
+ +
Sbjct: 159 ASRQEPSQGTTTF 171
>3bia_X T-cell immunoglobulin and mucin domain- containing protein 4;
beta barrel, immunoglobulin fold, IGV domain, TIM,
glycoprotein; HET: TLA; 2.20A {Mus musculus} PDB:
3bi9_X* 3bib_X*
Length = 116
Score = 30.7 bits (69), Expect = 0.19
Identities = 9/32 (28%), Positives = 13/32 (40%)
Query: 59 LNDRVKQVSGTLIIKEAKVEDSGKYLCVVNNS 90
L +V+ +L I DSG Y C +
Sbjct: 64 LLGKVQFGEVSLTISNTNRGDSGVYCCRIEVP 95
Score = 27.2 bits (60), Expect = 2.5
Identities = 15/84 (17%), Positives = 22/84 (26%), Gaps = 30/84 (35%)
Query: 149 GRPAQFTCKYEG--NPVKTISWMKDGKPVPDHNEPVFR---------------------- 184
G+P C Y ++ W K P N + R
Sbjct: 11 GQPVTLPCHYLSWSQSRNSMCWGKGSCPNSKCNAELLRTDGTRIISRKSTKYTLLGKVQF 70
Query: 185 ------IDSVRKEDKGMYQCVIRN 202
I + + D G+Y C I
Sbjct: 71 GEVSLTISNTNRGDSGVYCCRIEV 94
>3khq_A B-cell antigen receptor complex-associated protei chain; CD79B,
CD79A, IG-beta, BCR, IG domain, V-SET, immunoglobulin
protein binding; HET: FLC GSH; 1.70A {Mus musculus} PDB:
3kho_A*
Length = 133
Score = 30.8 bits (70), Expect = 0.19
Identities = 19/84 (22%), Positives = 28/84 (33%), Gaps = 11/84 (13%)
Query: 30 GESFALLCEAQEN---MWFKFIEGSSRKVAVPLNDRVKQ-VSG---TLIIKEAKVEDSGK 82
C + WF+ + V R+ Q +G TL I+ + ED+G
Sbjct: 32 SSMVKFHCYTNHSGALTWFRKRGSQQPQELVSEEGRIVQTQNGSVYTLTIQNIQYEDNGI 91
Query: 83 YLCVVNNSVGGESVE----TVLTV 102
Y C +V T L V
Sbjct: 92 YFCKQKCDSANHNVTDSCGTELLV 115
>3qib_D 2B4 beta chain; IG domain, immune system; HET: NAG FUC BMA; 2.70A
{Mus musculus}
Length = 270
Score = 31.5 bits (71), Expect = 0.23
Identities = 23/119 (19%), Positives = 36/119 (30%), Gaps = 22/119 (18%)
Query: 62 RVKQVSGTLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGR 121
+L I+ ++ DS YLC + + T R
Sbjct: 95 CPSNSPCSLEIQSSEAGDSALYLCASSLNWSQ------------------DTQYFGPGTR 136
Query: 122 PAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTC---KYEGNPVKTISWMKDGKPVPD 177
+ PP A EP+ I + A C + + V +SW +GK V
Sbjct: 137 LLVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHV-ELSWWVNGKEVHS 194
>2i24_N NEW antigen receptor PBLA8; immunoglobulin fold, immune system;
1.35A {Ginglymostoma cirratum} PDB: 2i25_N 2i27_N 2i26_N
Length = 121
Score = 30.4 bits (69), Expect = 0.23
Identities = 15/49 (30%), Positives = 20/49 (40%), Gaps = 11/49 (22%)
Query: 67 SGTLIIKEAKVEDSGKYLCVVNNSVGGESVE-----------TVLTVTA 104
S +L I + V+DSG Y C + G TV+TV A
Sbjct: 65 SFSLRINDLTVKDSGTYRCKPESRYGSYDAVCAALNDQYGGGTVVTVNA 113
>3mbe_C I-AG7; T cell receptor, histocompatability antigen, MHC class II, I
immune system; HET: NAG; 2.89A {Mus musculus}
Length = 229
Score = 31.2 bits (70), Expect = 0.26
Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 5/55 (9%)
Query: 64 KQVSGTLIIKEAKVEDSGKYLCVVNNSVGGESV----ETVLTVTAPLAAGVEPTV 114
K+ TL IK+A++EDSG Y C + G + T+L+V P EP V
Sbjct: 66 KERYSTLHIKDAQLEDSGTYFCAAEDGGSGNKLIFGTGTLLSVK-PNIQNPEPAV 119
>2coq_A NEW antigen receptor variable domain; IG VNAR, natural TYPE2,
immune system; 2.10A {Orectolobus maculatus}
Length = 108
Score = 30.0 bits (68), Expect = 0.30
Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 7/43 (16%)
Query: 67 SGTLIIKEAKVEDSGKYLCVVNNSVGGESVE-------TVLTV 102
S +L I++ +VEDSG Y C + TVLTV
Sbjct: 65 SASLTIRDLRVEDSGTYKCKAYRRCAFNTGVGYKEGAGTVLTV 107
>3o81_A Beta-2-microglobulin; IG-like C1-type (immunoglobulin-like) domain,
histocompatibi antigen, MHC class I molecule from B21
chicken, immune SYST; 2.00A {Gallus gallus}
Length = 119
Score = 30.1 bits (68), Expect = 0.30
Identities = 14/57 (24%), Positives = 18/57 (31%), Gaps = 7/57 (12%)
Query: 135 LAAGVEPTVQ-----TIDFGRPAQFTCKYEG--NPVKTISWMKDGKPVPDHNEPVFR 184
A + P VQ G C G P +I+ MKDG P+
Sbjct: 19 AQADLTPKVQVYSRFPASAGTKNVLNCFAAGFHPPKISITLMKDGVPMEGAQYSDMS 75
>2v9y_A Phosphoribosylformylglycinamidine cyclo-ligase; multifunctional
enzyme, structural genomics consortium,
nucleotide-binding, purine biosynthesis; 2.10A {Homo
sapiens}
Length = 334
Score = 31.0 bits (71), Expect = 0.33
Identities = 11/37 (29%), Positives = 18/37 (48%)
Query: 177 DHNEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGEL 213
H E + I SV +G + ++N ES Q +G +
Sbjct: 295 QHKEEAWVIGSVVARAEGSPRVKVKNLIESMQINGSV 331
>3nvq_A Semaphorin-7A; beta-propeller, signaling, signaling protein-protein
binding; HET: NAG NDG; 2.40A {Homo sapiens}
Length = 590
Score = 31.1 bits (69), Expect = 0.40
Identities = 9/46 (19%), Positives = 15/46 (32%), Gaps = 8/46 (17%)
Query: 161 NPVKTISWMKDGKPVPDHNEPVFR-------IDSVRKEDKGMYQCV 199
+ T SW EP + I+++ + G Y C
Sbjct: 526 SRHATYSWRHKENVEQ-SCEPGHQSPNCILFIENLTAQQYGHYFCE 570
Score = 28.1 bits (61), Expect = 3.8
Identities = 8/44 (18%), Positives = 13/44 (29%), Gaps = 1/44 (2%)
Query: 62 RVKQVSGTLIIKEAKVEDSGKYLCV-VNNSVGGESVETVLTVTA 104
+ + L I+ + G Y C S E+ L
Sbjct: 546 GHQSPNCILFIENLTAQQYGHYFCEAQEGSYFREAQHWQLLPED 589
>2bnu_A TCR alpha chain, T-cell receptor alpha chain C region; superagonist
peptide T-cell vaccines, transmembrane, immunoglobulin
domain; 1.40A {Homo sapiens} PDB: 2bnq_D 2bnr_D 2f54_D
2pyf_A* 2pye_D* 2f53_D 2p5e_D* 2p5w_D* 3mv7_D 3mv8_D
3mv9_D 3utt_D 2cdg_A
Length = 203
Score = 30.3 bits (68), Expect = 0.40
Identities = 12/35 (34%), Positives = 16/35 (45%)
Query: 64 KQVSGTLIIKEAKVEDSGKYLCVVNNSVGGESVET 98
TL I ++ DS YLC V + GG + T
Sbjct: 68 SSGRSTLYIAASQPGDSATYLCAVRPTSGGSYIPT 102
>1k5n_B Beta-2-microglobulin, light chain; MHC(major histocompatibility
complex), HLA(human leukocyte A immune system; 1.09A
{Homo sapiens} SCOP: b.1.1.2 PDB: 1a9b_B 1b0g_B 1b0r_B
1bd2_B 1cg9_B 1a9e_B 1duy_B 1eey_B 1eez_B 1efx_B 1gzp_B*
1gzq_B* 1hhg_B 1hhh_B 1hhi_B 1hhj_B 1hhk_B 1i1f_B 1i1y_B
1duz_B* ...
Length = 100
Score = 29.2 bits (66), Expect = 0.46
Identities = 7/53 (13%), Positives = 15/53 (28%), Gaps = 7/53 (13%)
Query: 139 VEPTVQ-----TIDFGRPAQFTCKYEG--NPVKTISWMKDGKPVPDHNEPVFR 184
P +Q + G+ C G + +K+G+ +
Sbjct: 4 RTPKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVEHSDLS 56
>3gbl_A BETA2-microglobulin; immune response, immunoglobulin domain, MHC I,
secreted, immune system; 2.10A {Ctenopharyngodon idella}
Length = 97
Score = 28.8 bits (65), Expect = 0.52
Identities = 10/49 (20%), Positives = 20/49 (40%), Gaps = 7/49 (14%)
Query: 139 VEPTVQ-----TIDFGRPAQFTCKYEG--NPVKTISWMKDGKPVPDHNE 180
P +Q ++G+ C G P +I +K+G+ + D +
Sbjct: 3 SSPKIQVYSHYPGEYGKENTLICYVSGFHPPDISIELLKNGEVIADAQQ 51
>3c6l_A TCR 2W20 alpha chain; TCR-PMHC complex; 3.40A {Mus musculus} SCOP:
b.1.1.1 b.1.1.2
Length = 185
Score = 29.8 bits (67), Expect = 0.55
Identities = 13/48 (27%), Positives = 20/48 (41%), Gaps = 1/48 (2%)
Query: 67 SGTLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTVTAPLAAGVEPTV 114
+L I +++ DS Y C +++ T L V P EP V
Sbjct: 71 KFSLHIADSQPGDSATYFCAASDNRIFFGDGTQLVVK-PNIQNPEPAV 117
>3q5y_A TCR N15 beta; IG, T cell receptor, antigen peptide/MHC, membrane,
immune S; HET: EPE; 1.90A {Mus musculus} PDB: 1nfd_B*
3q5t_A
Length = 240
Score = 30.3 bits (68), Expect = 0.58
Identities = 23/119 (19%), Positives = 38/119 (31%), Gaps = 23/119 (19%)
Query: 62 RVKQVSGTLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGR 121
+ + + ++EDS Y C + G E G TV
Sbjct: 69 QFDDYHSEMNMSALELEDSAMYFCASSLRWGDEQ---------YFGPGTRLTVLED---- 115
Query: 122 PAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTC---KYEGNPVKTISWMKDGKPVPD 177
++PP + EP+ I + A C + + V +SW +GK V
Sbjct: 116 ------LRNVTPPKVSLFEPSKAEIANKQKATLVCLARGFFPDHV-ELSWWVNGKEVHS 167
>2q86_A Valpha14 TCR; INKT cells, TCR, glycolipid recognition, innate
immunity, IM system; HET: NAG BMA MAN FUC; 1.85A {Mus
musculus} PDB: 3quy_C* 3o9w_C* 3qux_C* 3o8x_C* 3quz_C*
3rtq_C* 3rzc_C* 3ta3_C* 3tvm_C* 3qi9_C* 3ard_C* 3are_C*
3arf_C* 3arg_C* 3he6_C* 3he7_C* 3arb_C* 3scm_C* 3sda_C*
3sdc_C* ...
Length = 229
Score = 30.1 bits (67), Expect = 0.59
Identities = 8/27 (29%), Positives = 12/27 (44%)
Query: 64 KQVSGTLIIKEAKVEDSGKYLCVVNNS 90
TL I ++D+ Y CVV +
Sbjct: 69 DAKHSTLHITATLLDDTATYFCVVGDR 95
>1xau_A B- and T-lymphocyte attenuator; IG domain, beta sandwich,
structural genomics, PSI, protein structure initiative;
1.80A {Mus musculus} SCOP: b.1.1.4
Length = 122
Score = 29.1 bits (64), Expect = 0.67
Identities = 18/91 (19%), Positives = 28/91 (30%), Gaps = 21/91 (23%)
Query: 30 GESFALLCEAQ------ENMWFKFIEGSSRKVAVPLNDRVKQVSG----------TLIIK 73
GE F + C + W K + + VPL + + L K
Sbjct: 29 GELFKIECPVKYCVHRPNVTWCKH----NGTIWVPLEVGPQLYTSWEENRSVPVFVLHFK 84
Query: 74 EAKVEDSGKYLCVVNNSVG-GESVETVLTVT 103
+ D+G Y C N + S + V
Sbjct: 85 PIHLSDNGSYSCSTNFNSQVINSHSVTIHVR 115
Score = 26.0 bits (56), Expect = 7.4
Identities = 15/64 (23%), Positives = 20/64 (31%), Gaps = 16/64 (25%)
Query: 150 RPAQFTCKYEGN--------PVKTISWMKDGKPVPDHNEPVF--RIDSVRKEDKGMYQCV 199
RP CK+ G P SW ++ + PVF + D G Y C
Sbjct: 44 RPNVTWCKHNGTIWVPLEVGPQLYTSWEENR------SVPVFVLHFKPIHLSDNGSYSCS 97
Query: 200 IRNE 203
Sbjct: 98 TNFN 101
>1oga_E TRBC1, T-cell receptor beta chain C region; immune system/receptor,
immune system/receptor/complex, TCR, MHC,
immunodominance, FLU, complex; 1.40A {Homo sapiens}
SCOP: b.1.1.1 b.1.1.2 PDB: 2vlm_E 2vlk_E 2vlj_E 2vlr_E
2xna_B 2xn9_B 2axh_A 2axj_A 3scm_D* 3sda_D* 3sdc_D*
3sdd_D* 3qi9_D* 3mff_B* 2ak4_E 3he7_D* 2eyr_B 3pqy_E
3kxf_E 2cde_B ...
Length = 252
Score = 29.6 bits (66), Expect = 0.84
Identities = 25/120 (20%), Positives = 38/120 (31%), Gaps = 25/120 (20%)
Query: 62 RVKQVSGTLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGR 121
R K+ S L + A+ + YLC ++ Q G
Sbjct: 70 REKKESFPLTVTSAQKNPTAFYLCASSSRS--------------------SYEQYFGPGT 109
Query: 122 PAQFTC-KYEISPPLAAGVEPTVQTIDFGRPAQFTC---KYEGNPVKTISWMKDGKPVPD 177
T + PP A EP+ I + A C + + V +SW +GK V
Sbjct: 110 RLTVTEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHV-ELSWWVNGKEVHS 168
>2pnd_A V-SET and immunoglobulin domain containing 4; complement receptor,
IG-like domain, immune system; 1.00A {Mus musculus} PDB:
2icc_A 2ice_S* 2icf_S*
Length = 119
Score = 28.8 bits (64), Expect = 0.87
Identities = 5/32 (15%), Positives = 15/32 (46%)
Query: 184 RIDSVRKEDKGMYQCVIRNEQESAQASGELKL 215
+I++++ +D+ Y C + + K+
Sbjct: 81 QINTLQMDDRNHYTCEVTWQTPDGNQVIRDKI 112
Score = 28.8 bits (64), Expect = 0.90
Identities = 8/40 (20%), Positives = 14/40 (35%), Gaps = 5/40 (12%)
Query: 69 TLIIKEAKVEDSGKYLCVV-----NNSVGGESVETVLTVT 103
+L I +++D Y C V + + L V
Sbjct: 79 SLQINTLQMDDRNHYTCEVTWQTPDGNQVIRDKIIELRVR 118
>2ywz_A NEW antigen receptor variable domain; IG VNAR, immune system; 2.21A
{Orectolobus maculatus} PDB: 2ywy_A
Length = 111
Score = 28.4 bits (64), Expect = 0.87
Identities = 17/46 (36%), Positives = 21/46 (45%), Gaps = 10/46 (21%)
Query: 67 SGTLIIKEAKVEDSGKYLCVVNNSVGGESVE----------TVLTV 102
S +L I + +VEDSG Y C + S S TVLTV
Sbjct: 65 SFSLRISDLRVEDSGTYKCQADYSPSCYSYPSLESAVEGAGTVLTV 110
>1i1r_A GP130, interleukin-6 receptor beta chain; cytokine/receptor
complex, GP130; 2.40A {Homo sapiens} SCOP: b.1.2.1
b.1.2.1 b.1.2.1 PDB: 1p9m_A
Length = 303
Score = 29.8 bits (66), Expect = 0.90
Identities = 13/130 (10%), Positives = 23/130 (17%), Gaps = 27/130 (20%)
Query: 139 VEPTVQTIDFGRPAQFTCKY-------EGNPVKTISWMKDGKPVPDHNEPVFRIDSVR-- 189
+ P + C I W + +P + +
Sbjct: 9 ISPESPVVQLHSNFTAVCVLKEKCMDYFHVNANYIVWKTNHFTIPKEQYTIINRTASSVT 68
Query: 190 ----KEDKGMYQCVIRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIA 245
C I + Q + + L P CI
Sbjct: 69 FTDIASLNIQLTCNILTFGQLEQNVYGITI--------------ISGLPPEKPKNLSCIV 114
Query: 246 SGNPTPEISW 255
+ W
Sbjct: 115 NEGKKMRCEW 124
>3moq_A NEW antigen receptor variable domain, P3(40) PEPT amyloid beta A4
protein; AB-ignar, AB-12Y-2, glycoprotein, membran
protease inhibitor; 2.05A {Orectolobus maculatus} PDB:
2z8w_C 2z8v_C 1ves_A 1ver_A
Length = 126
Score = 28.6 bits (64), Expect = 0.92
Identities = 17/60 (28%), Positives = 23/60 (38%), Gaps = 2/60 (3%)
Query: 67 SGTLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFT 126
S +L I + +VEDSG Y C E V + A + V V + G T
Sbjct: 65 SFSLRISDLRVEDSGTYKCQAFYVFFAEDVGS--NKGAIIGLMVGGVVIGGEKGAGTALT 122
>3omz_A Human vdelta1 gamma delta T cell receptor delta1A; immunoglobulin
fold, immune surveillance of cell stress PROT A/B,
MIC-A/B binding, epithelium; 3.04A {Homo sapiens}
Length = 259
Score = 29.4 bits (66), Expect = 0.94
Identities = 17/105 (16%), Positives = 30/105 (28%), Gaps = 10/105 (9%)
Query: 67 SGTLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGRPAQFT 126
+ +I++ DSG Y C + + + T D +
Sbjct: 78 NLRMILRNLIENDSGVYYCATWDQNYYKKLFGSGTSLVVTDKQGSADDAKKDAAKKDGAQ 137
Query: 127 CKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEGNPVK-TISWMK 170
+ ++ V V T+ C YE + I W K
Sbjct: 138 KVTQAQSSVSMPVRKAV-TL--------NCLYETSWWSYYIFWYK 173
Score = 27.9 bits (62), Expect = 3.7
Identities = 13/41 (31%), Positives = 18/41 (43%), Gaps = 5/41 (12%)
Query: 67 SGTLIIKEAKVEDSGKYLCVVNNSVGGESVE-----TVLTV 102
S L I ++EDS KY C + S+ T +TV
Sbjct: 208 SVALTISALQLEDSAKYFCALGESLTRADKLIFGKGTRVTV 248
>2aw2_A B and T lymphocyte attenuator; IGI domain, IGG domain, TNFRSF,
protein-protein complex, IMM system; HET: NAG FUL; 2.80A
{Homo sapiens} SCOP: b.1.1.1
Length = 120
Score = 28.6 bits (63), Expect = 1.00
Identities = 22/88 (25%), Positives = 27/88 (30%), Gaps = 18/88 (20%)
Query: 30 GESFALLCEAQENM------WFKFIEGSSRKVAVPLNDRV-------KQVSGTLIIKEAK 76
G+ F L C + W K + V L DR L +
Sbjct: 26 GDPFELECPVKYCANRPHVTWCKL----NGTTCVKLEDRQTSWKEEKNISFFILHFEPVL 81
Query: 77 VEDSGKYLCVVNNSVGG-ESVETVLTVT 103
D+G Y C N ES T L VT
Sbjct: 82 PNDNGSYRCSANFQSNLIESHSTTLYVT 109
Score = 26.7 bits (58), Expect = 3.9
Identities = 14/67 (20%), Positives = 22/67 (32%), Gaps = 13/67 (19%)
Query: 150 RPAQFTCKYEGN-----PVKTISWMKDGKPVPDHNEPVF--RIDSVRKEDKGMYQCVIRN 202
RP CK G + SW ++ N F + V D G Y+C
Sbjct: 41 RPHVTWCKLNGTTCVKLEDRQTSWKEEK------NISFFILHFEPVLPNDNGSYRCSANF 94
Query: 203 EQESAQA 209
+ ++
Sbjct: 95 QSNLIES 101
>1lk2_B Beta-2-microglobulin; class I MHC-peptide complex, high resolution,
anisotropic AN refinement, immune system; HET: NAG FUC;
1.35A {Mus musculus} SCOP: b.1.1.2 PDB: 1bqh_B 1cd1_B
1fo0_L* 1fzj_B* 1fzm_B* 1fzo_B* 1g6r_L 1fzk_B* 1g7q_B*
1hoc_B 1inq_B 1juf_B 1k8d_B 1kbg_L* 1kj2_L* 1kj3_L
1kpu_B* 1kpv_B* 1ld9_B 1ldp_L* ...
Length = 99
Score = 28.1 bits (63), Expect = 1.2
Identities = 11/47 (23%), Positives = 17/47 (36%), Gaps = 7/47 (14%)
Query: 139 VEPTVQ-----TIDFGRPAQFTCKYEG--NPVKTISWMKDGKPVPDH 178
P +Q + G+P C P I +K+GK +P
Sbjct: 3 KTPQIQVYSRHPPENGKPNILNCYVTQFHPPHIEIQMLKNGKKIPKV 49
>3pl6_D MBP peptide / T-cell receptor beta chain chimera; TCR-MHC complex,
immunoglobulin fold, immune receptor, membr immune
system; HET: NAG; 2.55A {Homo sapiens}
Length = 268
Score = 28.9 bits (64), Expect = 1.6
Identities = 31/138 (22%), Positives = 44/138 (31%), Gaps = 32/138 (23%)
Query: 49 EGSSRKVAVPLNDR--VKQVSG---TLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTVT 103
G++ +P NDR + G TL I+ + DS YLC
Sbjct: 77 TGAADDSGLP-NDRFFAVRPEGSVSTLKIQRTERGDSAVYLC------------------ 117
Query: 104 APLAAGVEPTVQTIDFGRPAQFTC-KYEISPPLAAGVEPTVQTIDFGRPAQFTC---KYE 159
A Q G + PP A EP+ I + A C +
Sbjct: 118 ---ATSALGDTQYFGPGTRLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFY 174
Query: 160 GNPVKTISWMKDGKPVPD 177
+ V +SW +GK V
Sbjct: 175 PDHV-ELSWWVNGKEVHS 191
>2c9a_A Receptor-type tyrosine-protein phosphatase MU; glycoprotein,
hydrolase, immunoglobulin domain; HET: NAG MAN NDG FUL;
2.7A {Homo sapiens} SCOP: b.1.1.4 b.29.1.25
Length = 259
Score = 28.7 bits (63), Expect = 1.8
Identities = 21/99 (21%), Positives = 31/99 (31%), Gaps = 17/99 (17%)
Query: 117 IDFGRPAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEGNPVKTISWMKDG---- 172
ID + C P ++ ++ G+ A F C G V G
Sbjct: 152 IDEVKVLGHPC---TRTPHFLRIQNV--EVNAGQFATFQCSAIGRTVAGDRLWLQGIDVR 206
Query: 173 -------KPVPDHNEPV-FRIDSVRKEDKGMYQCVIRNE 203
K F + + K D G Y+C+IR E
Sbjct: 207 DAPLKEIKVTSSRRFIASFNVVNTTKRDAGKYRCMIRTE 245
>1u9k_A Triggering receptor expressed on myeloid cells 1; activating
receptors, TREM-1, innate immunity, immune system
receptor, immune system; 1.76A {Mus musculus} SCOP:
b.1.1.1
Length = 114
Score = 27.6 bits (62), Expect = 1.9
Identities = 6/17 (35%), Positives = 11/17 (64%)
Query: 186 DSVRKEDKGMYQCVIRN 202
++ D G+Y+CVI +
Sbjct: 81 TDLQVTDSGLYRCVIYH 97
>3bp6_A Programmed cell death protein 1; PD-1, PD-L2, complex,
costimulation, glycoprotein, immunoglo domain, membrane,
transmembrane, receptor; 1.60A {Mus musculus} PDB:
3rnk_A 3sbw_A 3bp5_A 1npu_A 3rnq_A
Length = 117
Score = 27.7 bits (62), Expect = 1.9
Identities = 12/39 (30%), Positives = 16/39 (41%), Gaps = 4/39 (10%)
Query: 69 TLIIKEAKVEDSGKYLCVVNNSVG----GESVETVLTVT 103
+ I + + DSG YLC + ES L VT
Sbjct: 74 HMNILDTRRNDSGIYLCGAISLHPKLKIEESPGAELVVT 112
>2ptt_B Natural killer cell receptor 2B4; CD244, CD48, NK cell receptor,
X-RAY, immune system; 1.63A {Mus musculus} PDB: 2ptu_A
1z2k_A
Length = 112
Score = 27.8 bits (61), Expect = 1.9
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 69 TLIIKEAKVEDSGKYLCVVNNSVGGESVET 98
L IK AK++DSG YL + N+ G +
Sbjct: 76 ALSIKSAKLQDSGHYLLEITNTGGKVCNKN 105
>1a64_A CD2; domain swapping, hinge loop, oligomer evolution; 2.00A
{Rattus norvegicus} SCOP: b.1.1.1 PDB: 1a7b_A 1cdc_B
1a6p_A 1t6w_A
Length = 97
Score = 27.3 bits (60), Expect = 2.0
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 67 SGTLIIKEAKVEDSGKYLCVVNNSVG 92
+G L IK +DSG Y V ++ G
Sbjct: 58 NGDLKIKNLTRDDSGTYNVTVYSTNG 83
>1bii_B Beta-2 microglobulin, MHC class I H-2DD; complex (MHC I/peptide),
major histocompatibility complex class I DD,
transmembrane, glycoprotein; 2.40A {Mus musculus} SCOP:
b.1.1.2
Length = 119
Score = 27.8 bits (62), Expect = 2.0
Identities = 12/55 (21%), Positives = 20/55 (36%), Gaps = 7/55 (12%)
Query: 131 ISPPLAAGVEPTVQ-----TIDFGRPAQFTCKYEG--NPVKTISWMKDGKPVPDH 178
++ A P +Q + G+P C P I +K+GK +P
Sbjct: 15 LTGLYAIQKTPQIQVYSRHPPENGKPNILNCYVTQFHPPHIEIQMLKNGKKIPKV 69
>3gsn_A RA14 TCR alpha chain (TRAV24, TRAJ49); HLA, human
cytomegalovirus, PP65, T cell receptor (TCR), immune
response, public response; 2.80A {Homo sapiens}
Length = 199
Score = 28.4 bits (63), Expect = 2.2
Identities = 10/24 (41%), Positives = 12/24 (50%)
Query: 67 SGTLIIKEAKVEDSGKYLCVVNNS 90
L IK ++ EDS YLC N
Sbjct: 71 YSYLYIKGSQPEDSATYLCARNTG 94
>3bik_B Programmed cell death protein 1; CO-stimulation, receptor-ligand
complex, immunoglobulin-like sandwich, T cell, B cell,
programmed death; 2.65A {Mus musculus} SCOP: b.1.1.1
Length = 134
Score = 27.8 bits (62), Expect = 2.3
Identities = 13/51 (25%), Positives = 18/51 (35%), Gaps = 6/51 (11%)
Query: 69 TLIIKEAKVEDSGKYLCVVNNSVG----GESVETVLTVTAPLAAGVEPTVQ 115
+ I + + DSG YLC + ES L VT + T
Sbjct: 84 HMNILDTRRNDSGIYLCGAISLHPKAKIEESPGAELVVTERILE--TSTRY 132
>1ymm_D T cell receptor alpha chain; protein-protein complex, T cell
repertoire, auto-immunity, I system; HET: NAG; 3.50A
{Homo sapiens} SCOP: b.1.1.1
Length = 207
Score = 28.1 bits (62), Expect = 2.6
Identities = 6/23 (26%), Positives = 12/23 (52%)
Query: 67 SGTLIIKEAKVEDSGKYLCVVNN 89
S +L+I ++ D+ Y C +
Sbjct: 71 SSSLLITASRAADTASYFCATDT 93
>2qsq_A Carcinoembryonic antigen-related cell adhesion MO; glycoprotein,
GPI-anchor, immunoglobulin DOMA lipoprotein, membrane;
1.95A {Homo sapiens} PDB: 2qst_A 2ver_N* 2gk2_A
Length = 111
Score = 27.2 bits (60), Expect = 2.7
Identities = 10/40 (25%), Positives = 17/40 (42%), Gaps = 1/40 (2%)
Query: 68 GTLIIKEAKVEDSGKY-LCVVNNSVGGESVETVLTVTAPL 106
+L+I+ D+G Y L V+ + + E V L
Sbjct: 72 ASLLIQNIIQNDAGFYTLHVIKSDLVNEEATGQFRVYPEL 111
>3jts_B Beta-2-microglobulin; alpha helix, beta sheet, beta barrel, immune
response, MHC I membrane, transmembrane, disease
mutation; 2.80A {Homo sapiens}
Length = 119
Score = 27.3 bits (61), Expect = 2.7
Identities = 9/65 (13%), Positives = 18/65 (27%), Gaps = 7/65 (10%)
Query: 127 CKYEISPPLAAGVEPTVQT-----IDFGRPAQFTCKYEG--NPVKTISWMKDGKPVPDHN 179
+S A P +Q + G+ C G + +K+G+ +
Sbjct: 11 ALLSLSGLEAIQRTPKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVE 70
Query: 180 EPVFR 184
Sbjct: 71 HSDLS 75
>1zlg_A Anosmin 1; insulin-like growth factor receptor Cys-rich fold, WHEY
acidic protein fold, fibronectin type III fold, hormone-
growth factor complex; NMR {Homo sapiens}
Length = 680
Score = 28.4 bits (62), Expect = 3.1
Identities = 10/40 (25%), Positives = 11/40 (27%)
Query: 78 EDSGKYLCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTI 117
E SG C N V L PL E +
Sbjct: 133 ECSGVKKCCSNGCGHTCQVPKTLYKGVPLKPRKELRFTEL 172
>2rcj_C Light chain; immunoglobulin M, polymeric antibodies, immunology,
X-RAY solution scattering, constrained modelling, immune
system; NMR {Homo sapiens}
Length = 523
Score = 27.9 bits (62), Expect = 3.5
Identities = 26/115 (22%), Positives = 30/115 (26%), Gaps = 28/115 (24%)
Query: 67 SGTLIIKEAKVEDSGKYLCVVNNSVGGESVE-TVLTVTAPLAAGVEPTVQTIDFGRPAQF 125
S +L I + ED Y C NS V T VT PTV
Sbjct: 69 SASLAISGLEAEDESDYYCASWNSSDNSYVFGTGTKVTVLGQPKANPTV----------- 117
Query: 126 TCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEG---NPVKTISWMKDGKPVPD 177
E A C V T++W DG PV
Sbjct: 118 -------TLFPPSSEELQ-----ANKATLVCLISDFYPGAV-TVAWKADGSPVKA 159
>2p1y_A Bispecific alpha/beta TCR; autoimmunity, immunoglobulin fold,
diabody, immune system; 2.42A {Mus musculus} PDB: 1bwm_A
Length = 238
Score = 27.8 bits (62), Expect = 3.5
Identities = 19/107 (17%), Positives = 28/107 (26%), Gaps = 12/107 (11%)
Query: 62 RVKQVSGTLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTVTAPLAAGVEPTVQTIDFGR 121
R Q + +LI++ A + Y C + T G + +
Sbjct: 67 RPSQENFSLILELATPSQTSVYFCASGDLGQTNERLFFGHGTKLSVLGSADDAKKDAAKK 126
Query: 122 PAQFTCKYEISPPLAAGVEPTVQTIDFGRPAQFTCKYEGNPVKTISW 168
Q SP E G A C YE + W
Sbjct: 127 DGQVR----QSPQSLTVWE--------GETAILNCSYENSAFDYFPW 161
>2oi9_C V beta, T cell receptor beta chain; TCR, MHC, immune system;
2.35A {Mus musculus} PDB: 2e7l_C
Length = 121
Score = 26.8 bits (60), Expect = 3.7
Identities = 18/78 (23%), Positives = 27/78 (34%), Gaps = 24/78 (30%)
Query: 30 GESFALLCEAQEN---M-WF--------KFI-----EGSSRKVAVPLNDR--VKQVSG-- 68
GE L C N M W+ + I GS+ K +P D + S
Sbjct: 16 GEKVTLSCNQTNNHNNMYWYRQDTGHELRLIYYSYGAGSTEKGDIP--DGYKASRPSQEN 73
Query: 69 -TLIIKEAKVEDSGKYLC 85
+L ++ A + Y C
Sbjct: 74 FSLTLESATPSQTSVYFC 91
>3rrq_A Protein PD-1, programmed cell death protein 1; programmed death-1,
costimulatory, immune system; 2.10A {Homo sapiens}
Length = 129
Score = 26.9 bits (60), Expect = 4.0
Identities = 9/43 (20%), Positives = 14/43 (32%), Gaps = 6/43 (13%)
Query: 69 TLIIKEAKVEDSGKYLCVVNNSV------GGESVETVLTVTAP 105
+ + A+ DSG YLC + E +T
Sbjct: 76 HMSVVRARRNDSGTYLCGAISLAPKLQIKESLRAELRVTERRA 118
>2nw2_A ELS4 TCR alpha chain; T cell receptor, immune system; 1.40A {Homo
sapiens} PDB: 2nx5_D 4dzb_A
Length = 200
Score = 27.6 bits (61), Expect = 4.1
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 67 SGTLIIKEAKVEDSGKYLCVVNNSVGG 93
L++KE +++DS YLC V S G
Sbjct: 69 YSYLLLKELQMKDSASYLCAVQASGGS 95
>3kg5_A B-cell antigen receptor complex-associated protei chain; CD79B,
IG-beta, BCR, immunoglobulin domain, protein binding;
3.20A {Homo sapiens}
Length = 134
Score = 27.0 bits (60), Expect = 4.2
Identities = 17/98 (17%), Positives = 34/98 (34%), Gaps = 18/98 (18%)
Query: 17 SSVSDIIRFKKPGGESFALLCEAQENM-----WFKFIEGSSRKVAVPLNDRVKQV-SG-- 68
++ +K G + + C +K + + R+++ +
Sbjct: 26 RFIA-----RKRG-FTVKMHCYMNSASGNVSWLWKQEMDENPQQLKLEKGRMEESQNESL 79
Query: 69 -TLIIKEAKVEDSGKYLCVVNNSVGGESVE---TVLTV 102
TL I+ + ED+G Y C + E + T L V
Sbjct: 80 ATLTIQGIRFEDNGIYFCQQKCNNTSEVYQGCGTELRV 117
>4dzb_B Vbeta2 (MAIT T cell receptor); immune system; 1.70A {Homo sapiens}
PDB: 1ymm_E* 3o4l_E* 3o6f_D 3t0e_D 1ktk_E 3mfg_B 2ij0_E
Length = 246
Score = 27.5 bits (61), Expect = 4.3
Identities = 30/134 (22%), Positives = 40/134 (29%), Gaps = 32/134 (23%)
Query: 69 TLIIKEAKVEDSGKYLCVVNNSVGGESVE----TVLTVTAPLAAGVEPTVQTIDFGRPAQ 124
TL + A EDS Y+C S T LTV L P V
Sbjct: 78 TLTVTSAHPEDSSFYICSARTSGDFGEQFFGPGTRLTVLEDLKNVFPPEV---------- 127
Query: 125 FTCKYEISPPLAAGVEPTVQTIDFGRPAQFTC---KYEGNPVKTISWMKDGKPVPD--HN 179
A EP+ I + A C + + V +SW +GK V
Sbjct: 128 ------------AVFEPSEAEISHTQKATLVCLATGFYPDHV-ELSWWVNGKEVHSGVCT 174
Query: 180 EPVFRIDSVRKEDK 193
+P + D
Sbjct: 175 DPQPLKEQPALNDS 188
>3dmm_C T-cell surface glycoprotein CD8 alpha chain; T cell CO-receptor
CD8AB MHC complex, immune response, membrane, MHC I,
phosphoprotein, transmembrane; 2.60A {Mus musculus}
Length = 166
Score = 27.3 bits (60), Expect = 4.3
Identities = 13/47 (27%), Positives = 22/47 (46%), Gaps = 3/47 (6%)
Query: 69 TLIIKEAKVEDSGKYLC-VVNNSVGGESVETVLTVTAPLAAGVEPTV 114
L + + E+ G Y C V++NSV S +V+ V + + V
Sbjct: 91 VLTLNKFSKENEGYYFCSVISNSVMYFS--SVVPVLQKVNSTTTKPV 135
>1nez_G T-cell surface glycoprotein CD8 alpha chain; immune system; HET:
NAG; 2.10A {Synthetic} SCOP: b.1.1.1 PDB: 1bqh_G*
3b9k_A* 2atp_A* 2arj_R
Length = 128
Score = 26.8 bits (59), Expect = 4.6
Identities = 6/22 (27%), Positives = 11/22 (50%)
Query: 69 TLIIKEAKVEDSGKYLCVVNNS 90
L + + E+ G Y C V ++
Sbjct: 86 VLTLNKFSKENEGYYFCSVISN 107
>1oga_D T-cell receptor alpha chain V region, beta-2-microglobulin;
immune system/receptor, immune system/receptor/complex,
TCR, MHC, immunodominance, FLU, complex; 1.40A {Homo
sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 2xna_A 2xn9_A
2vlm_D 2vlk_D 2vlj_D 2vlr_D 2cdf_A 2wbj_C* 3qdm_D
3qeq_D
Length = 215
Score = 27.3 bits (60), Expect = 4.7
Identities = 10/26 (38%), Positives = 13/26 (50%)
Query: 67 SGTLIIKEAKVEDSGKYLCVVNNSVG 92
+L I A+ D+G YLC S G
Sbjct: 71 DSSLHITAAQPGDTGLYLCAGAGSQG 96
>1lp9_E T-cell receptor alpha chain; immunoregulatory complex, class I
MHC:TCR CO-crystal, immune; 2.00A {Mus musculus} SCOP:
b.1.1.1 b.1.1.2 PDB: 2j8u_E 2jcc_E 2uwe_E 1nfd_A*
Length = 194
Score = 27.3 bits (60), Expect = 4.7
Identities = 11/50 (22%), Positives = 18/50 (36%), Gaps = 3/50 (6%)
Query: 67 SGTLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTVTAPLAAGVEPTVQT 116
S L A++ DS Y C + + + L + V P +Q
Sbjct: 72 SFHLQKSSAQLSDSALYYCALFLASSS---FSKLVFGQGTSLSVVPNIQN 118
>2eys_A NKT15; natural killer T cell receptor, immune system; 2.21A {Homo
sapiens} PDB: 2eyr_A 2eyt_A 3huj_E* 3tyf_A 3tzv_A*
3sdx_E* 2po6_C* 2cde_A 3to4_C*
Length = 210
Score = 27.3 bits (60), Expect = 4.7
Identities = 8/26 (30%), Positives = 15/26 (57%)
Query: 67 SGTLIIKEAKVEDSGKYLCVVNNSVG 92
+L I +++ DS Y+CVV++
Sbjct: 74 QSSLHITASQLSDSASYICVVSDRGS 99
>3qjh_A 5C.C7 alpha chain; immunoglobulin domain, T cell receptor, immune
system; 1.90A {Mus musculus} PDB: 3qiu_C* 3qiw_C* 3qjf_A
3qib_C 2ial_A 2iam_C 2ian_D 3rug_E* 3axl_A
Length = 205
Score = 27.4 bits (60), Expect = 4.9
Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 4/54 (7%)
Query: 64 KQVSGTLIIKEAKVEDSGKYLCVVNNSVGGESV---ETVLTVTAPLAAGVEPTV 114
K+ TL I++A++EDSG Y C S + V T L V P +P V
Sbjct: 68 KERYSTLHIRDAQLEDSGTYFCAAEASNTNKVVFGTGTRLQVL-PNIQNPDPAV 120
>2bc4_A HLA class II histocompatibility antigen, DM alpha chain; MHC class
II, immune system; HET: NDG BMA; 2.27A {Homo sapiens}
PDB: 1hdm_A 1k8i_A*
Length = 211
Score = 27.4 bits (60), Expect = 5.0
Identities = 5/19 (26%), Positives = 8/19 (42%)
Query: 162 PVKTISWMKDGKPVPDHNE 180
P+ T++W PV
Sbjct: 129 PMLTVNWQHHSVPVEGFGP 147
>4ei6_A Valpha1 XV19 type II natural killer T cell recept variable domain,
human constant...; natural killer T cell receptor,
immune system; 1.60A {Mus musculus} PDB: 4ei5_C 4elk_A
4elm_E* 3qeu_A 1ao7_D 3qdj_D 3qdg_D 3qfj_D 1qsf_D
1qse_D* 3d39_D* 3d3v_D* 3h9s_D 3pwp_D 2gj6_D 3utp_D*
3uts_D 1qrn_D 3hg1_D 3rdt_A ...
Length = 208
Score = 27.3 bits (60), Expect = 5.0
Identities = 11/50 (22%), Positives = 18/50 (36%), Gaps = 3/50 (6%)
Query: 67 SGTLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTVTAPLAAGVEPTVQT 116
+L I++++ DS Y C + T T V P +Q
Sbjct: 72 HVSLHIRDSQPSDSALYFCAASEQNNYAQGLTFGLGTRVS---VFPYIQN 118
>3s96_B 3B5H10 FAB light chain; huntingtin, immune system; 1.90A {Mus
musculus} PDB: 2qhr_L 3ffd_B 4dcq_A
Length = 218
Score = 26.9 bits (60), Expect = 6.8
Identities = 14/52 (26%), Positives = 23/52 (44%), Gaps = 9/52 (17%)
Query: 69 TLIIKEAKVEDSGKYLCVVNNSVGGESVE-----TVLTVT-APLAAGVEPTV 114
L I + ED Y+C V +++ + V T +TV P + PT+
Sbjct: 76 YLSISNIQPEDEAIYICGVGDTIKEQFVYVFGGGTKVTVLGQPKST---PTL 124
>1kjq_A GART 2, phosphoribosylglycinamide formyltransferase 2, 5'-;
ATP-grAsp, purine biosynthesis, nucleotide; HET: ADP
MPO; 1.05A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1
d.142.1.2 PDB: 1kj9_A* 1kji_A* 1kjj_A* 1kj8_A* 1eyz_A*
1ez1_A*
Length = 391
Score = 27.1 bits (61), Expect = 7.1
Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 3/37 (8%)
Query: 193 KGMYQCVIRNEQESAQASGELKLGGRFD-PPVIKESF 228
KG Q IR+ ++ AQA + GGR VI E
Sbjct: 162 KG--QTFIRSAEQLAQAWKYAQQGGRAGAGRVIVEGV 196
>3s6c_A Beta-2-microglobulin, T-cell surface glycoprotein
membrane-associated; MHC, immunoglobulin domain, immune
system, antigen presentat glycosylation; HET: NAG FUC;
2.90A {Homo sapiens}
Length = 392
Score = 26.9 bits (60), Expect = 7.2
Identities = 16/111 (14%), Positives = 32/111 (28%), Gaps = 18/111 (16%)
Query: 165 TISWMKDGKPVPD--HNEPVFRID---------SVRKEDKGMYQCVIRNEQESAQASGEL 213
+ +K+G+ + H++ F D +K Y C + + +
Sbjct: 36 EVDLLKNGERIEKVEHSDLSFSKDWSFYLLYYTEFTPTEKDEYACRV--NHVTLSQPKIV 93
Query: 214 KLGGRFDPPVIKESFSDETLNPGPN--YYFKCIASGNPT-PE--ISWYLDG 259
K D S SD+ + + N + S +L
Sbjct: 94 KWDRDMDDDDKGSSSSDDDDKEEQLSFRMLQTSSFANHSWAHSEGSGWLGD 144
>2vol_A Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry, cytoplasm, mouse
IGG, zinc-finger, DNA-binding, RNA-binding, tripartite
motif (TRIM) protein; HET: NAG MAN GAL FUC; 1.95A {Mus
musculus} PDB: 3hkf_A 1i1a_C* 1cqk_A
Length = 207
Score = 26.7 bits (59), Expect = 7.7
Identities = 9/49 (18%), Positives = 17/49 (34%), Gaps = 2/49 (4%)
Query: 66 VSGTLIIKEAKVEDSGKYLCVVNNSVGGESVETVLTVTAPLAAGVEPTV 114
L I + ++ C VN++ +E T++ P V
Sbjct: 66 SVSELPIMHQDWLNGKEFKCRVNSAAFPAPIEK--TISKTKGRPKAPQV 112
>1tvd_A T cell receptor, ES204 V delta; immunoreceptor, TCR, delta chain,
variable domain; 1.90A {Homo sapiens} SCOP: b.1.1.1
Length = 116
Score = 25.7 bits (57), Expect = 9.6
Identities = 10/38 (26%), Positives = 15/38 (39%), Gaps = 4/38 (10%)
Query: 69 TLIIKEAKVEDSGKYLCVVNNSVGGESVE----TVLTV 102
L+I + EDS Y C + + T +TV
Sbjct: 77 HLVISPVRTEDSATYYCAFTLPPPTDKLIFGKGTRVTV 114
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.315 0.135 0.404
Gapped
Lambda K H
0.267 0.0526 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,080,913
Number of extensions: 242837
Number of successful extensions: 2065
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1219
Number of HSP's successfully gapped: 740
Length of query: 267
Length of database: 6,701,793
Length adjustment: 92
Effective length of query: 175
Effective length of database: 4,133,061
Effective search space: 723285675
Effective search space used: 723285675
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 56 (25.8 bits)