BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3048
(367 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1JS3|A Chain A, Crystal Structure Of Dopa Decarboxylase In Complex With
The Inhibitor Carbidopa
pdb|1JS3|B Chain B, Crystal Structure Of Dopa Decarboxylase In Complex With
The Inhibitor Carbidopa
pdb|1JS6|A Chain A, Crystal Structure Of Dopa Decarboxylase
pdb|1JS6|B Chain B, Crystal Structure Of Dopa Decarboxylase
Length = 486
Score = 315 bits (808), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 158/347 (45%), Positives = 213/347 (61%), Gaps = 35/347 (10%)
Query: 1 MVSILAAKRKKILDLTSAGPTVSENDIKSRLVAYASDQSNSSVEKSAIIGDVPVRQLRSD 60
+V++LAA+ K + L +A P +++ + +LVAYASDQ++SSVE++ +IG V ++ + SD
Sbjct: 153 LVALLAARTKVVRRLQAASPGLTQGAVLEKLVAYASDQAHSSVERAGLIGGVKLKAIPSD 212
Query: 61 DNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEELGPICQEYNIWLHVDA 120
+R AL A++ D A GLIP +VATLGTT C+FDNL E+GPIC E +IWLHVDA
Sbjct: 213 GKFAMRASALQEALERDKAAGLIPFFVVATLGTTSCCSFDNLLEVGPICHEEDIWLHVDA 272
Query: 121 AYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHDCSAMWVKNANHLTNTFFTDRVY 180
AYAGSA + PE+ HL G+E+ DSF FN HKWLL N DCSAMWVK LT F D VY
Sbjct: 273 AYAGSAFICPEFRHLLNGVEFADSFNFNPHKWLLVNFDCSAMWVKRRTDLTGAFKLDPVY 332
Query: 181 LKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVI---QHWQTPLSRRFRAL 237
LKH+ G G+I +HWQ PL RRFR+L
Sbjct: 333 LKHSHQ--------------------------------GSGLITDYRHWQLPLGRRFRSL 360
Query: 238 KLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEKDDRFELVCPPSMGLVCFRLKGDNDLT 297
K+W R YG+KGLQAY+RKH+ L+ +F V +D RFE+ ++GLVCFRLKG + L
Sbjct: 361 KMWFVFRMYGVKGLQAYIRKHVQLSHEFEAFVLQDPRFEVCAEVTLGLVCFRLKGSDGLN 420
Query: 298 NQLYERLMSHKQIYIIKASFQGRPFLRFVVTSPETNQCDVAFAWNEI 344
L ER+ S ++I+++ +G+ LRF + S + V AW I
Sbjct: 421 EALLERINSARKIHLVPCRLRGQFVLRFAICSRKVESGHVRLAWEHI 467
Score = 29.3 bits (64), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 21/31 (67%)
Query: 194 DYTVMNWLGKALGLPEEFLNCSKGPGGGVIQ 224
+ +M+WLGK L LPE FL G GGGVIQ
Sbjct: 115 ETVMMDWLGKMLQLPEAFLAGEAGEGGGVIQ 145
>pdb|3RBF|A Chain A, Crystal Structure Of Human Aromatic L-Amino Acid
Decarboxylase (Aadc) In The Apo Form
pdb|3RBF|B Chain B, Crystal Structure Of Human Aromatic L-Amino Acid
Decarboxylase (Aadc) In The Apo Form
pdb|3RBL|A Chain A, Crystal Structure Of Human Aromatic L-Amino Acid
Decarboxylase (Aadc) In The Apo Form
pdb|3RBL|B Chain B, Crystal Structure Of Human Aromatic L-Amino Acid
Decarboxylase (Aadc) In The Apo Form
pdb|3RCH|B Chain B, Crystal Structure Of Human Aromatic L-Amino Acid
Decarboxylase (Aadc) In The Open Conformation With Llp
And Plp Bound To Chain-A And Chain- B Respectively
Length = 480
Score = 313 bits (802), Expect = 9e-86, Method: Compositional matrix adjust.
Identities = 159/353 (45%), Positives = 217/353 (61%), Gaps = 33/353 (9%)
Query: 1 MVSILAAKRKKILDLTSAGPTVSENDIKSRLVAYASDQSNSSVEKSAIIGDVPVRQLRSD 60
+V++LAA+ K I L +A P +++ I +LVAY+SDQ++SSVE++ +IG V ++ + SD
Sbjct: 153 LVALLAARTKVIHRLQAASPELTQAAIMEKLVAYSSDQAHSSVERAGLIGGVKLKAIPSD 212
Query: 61 DNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEELGPICQEYNIWLHVDA 120
N +R AL A++ D A GLIP +VATLGTT C+FDNL E+GPIC + +IWLHVDA
Sbjct: 213 GNFAMRASALQEALERDKAAGLIPFFMVATLGTTTCCSFDNLLEVGPICNKEDIWLHVDA 272
Query: 121 AYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHDCSAMWVKNANHLTNTFFTDRVY 180
AYAGSA + PE+ HL G+E+ DSF FN HKWLL N DCSAMWVK LT F D Y
Sbjct: 273 AYAGSAFICPEFRHLLNGVEFADSFNFNPHKWLLVNFDCSAMWVKKRTDLTGAFRLDPTY 332
Query: 181 LKHT--DAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALK 238
LKH+ D+ + T DY +HWQ PL RRFR+LK
Sbjct: 333 LKHSHQDSGLIT---DY----------------------------RHWQIPLGRRFRSLK 361
Query: 239 LWMTLRSYGLKGLQAYLRKHISLAKKFADLVEKDDRFELVCPPSMGLVCFRLKGDNDLTN 298
+W R YG+KGLQAY+RKH+ L+ +F LV +D RFE+ +GLVCFRLKG N +
Sbjct: 362 MWFVFRMYGVKGLQAYIRKHVQLSHEFESLVRQDPRFEICVEVILGLVCFRLKGSNKVNE 421
Query: 299 QLYERLMSHKQIYIIKASFQGRPFLRFVVTSPETNQCDVAFAWNEISHQSSEM 351
L +R+ S K+I+++ + + LRF + S V AW I ++++
Sbjct: 422 ALLQRINSAKKIHLVPCHLRDKFVLRFAICSRTVESAHVQRAWEHIKELAADV 474
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 22/31 (70%)
Query: 194 DYTVMNWLGKALGLPEEFLNCSKGPGGGVIQ 224
+ +M+WLGK L LP+ FLN G GGGVIQ
Sbjct: 115 ETVMMDWLGKMLELPKAFLNEKAGEGGGVIQ 145
>pdb|3RCH|A Chain A, Crystal Structure Of Human Aromatic L-Amino Acid
Decarboxylase (Aadc) In The Open Conformation With Llp
And Plp Bound To Chain-A And Chain- B Respectively
Length = 480
Score = 311 bits (797), Expect = 4e-85, Method: Compositional matrix adjust.
Identities = 158/353 (44%), Positives = 216/353 (61%), Gaps = 33/353 (9%)
Query: 1 MVSILAAKRKKILDLTSAGPTVSENDIKSRLVAYASDQSNSSVEKSAIIGDVPVRQLRSD 60
+V++LAA+ K I L +A P +++ I +LVAY+SDQ++SSVE++ +IG V ++ + SD
Sbjct: 153 LVALLAARTKVIHRLQAASPELTQAAIMEKLVAYSSDQAHSSVERAGLIGGVKLKAIPSD 212
Query: 61 DNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEELGPICQEYNIWLHVDA 120
N +R AL A++ D A GLIP +VATLGTT C+FDNL E+GPIC + +IWLHVDA
Sbjct: 213 GNFAMRASALQEALERDKAAGLIPFFMVATLGTTTCCSFDNLLEVGPICNKEDIWLHVDA 272
Query: 121 AYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHDCSAMWVKNANHLTNTFFTDRVY 180
AYAGSA + PE+ HL G+E+ DSF FN H WLL N DCSAMWVK LT F D Y
Sbjct: 273 AYAGSAFICPEFRHLLNGVEFADSFNFNPHXWLLVNFDCSAMWVKKRTDLTGAFRLDPTY 332
Query: 181 LKHT--DAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALK 238
LKH+ D+ + T DY +HWQ PL RRFR+LK
Sbjct: 333 LKHSHQDSGLIT---DY----------------------------RHWQIPLGRRFRSLK 361
Query: 239 LWMTLRSYGLKGLQAYLRKHISLAKKFADLVEKDDRFELVCPPSMGLVCFRLKGDNDLTN 298
+W R YG+KGLQAY+RKH+ L+ +F LV +D RFE+ +GLVCFRLKG N +
Sbjct: 362 MWFVFRMYGVKGLQAYIRKHVQLSHEFESLVRQDPRFEICVEVILGLVCFRLKGSNKVNE 421
Query: 299 QLYERLMSHKQIYIIKASFQGRPFLRFVVTSPETNQCDVAFAWNEISHQSSEM 351
L +R+ S K+I+++ + + LRF + S V AW I ++++
Sbjct: 422 ALLQRINSAKKIHLVPCHLRDKFVLRFAICSRTVESAHVQRAWEHIKELAADV 474
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 22/31 (70%)
Query: 194 DYTVMNWLGKALGLPEEFLNCSKGPGGGVIQ 224
+ +M+WLGK L LP+ FLN G GGGVIQ
Sbjct: 115 ETVMMDWLGKMLELPKAFLNEKAGEGGGVIQ 145
>pdb|3K40|A Chain A, Crystal Structure Of Drosophila 3,4-Dihydroxyphenylalanine
Decarboxylase
pdb|3K40|B Chain B, Crystal Structure Of Drosophila 3,4-Dihydroxyphenylalanine
Decarboxylase
Length = 475
Score = 309 bits (792), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 154/352 (43%), Positives = 217/352 (61%), Gaps = 32/352 (9%)
Query: 1 MVSILAAKRKKILDLTSAGPTVSENDIKSRLVAYASDQSNSSVEKSAIIGDVPVRQLRSD 60
+V++L AK KK+ ++ P E+ I +LV Y SDQ++SSVE++ ++G V +R ++S+
Sbjct: 153 LVALLGAKAKKLKEVKELHPEWDEHTILGKLVGYCSDQAHSSVERAGLLGGVKLRSVQSE 212
Query: 61 DNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEELGPICQEYNIWLHVDA 120
N +RG AL A+++D+A+GLIP V TLGTT +CAFD L+E GP+ ++N+W+HVDA
Sbjct: 213 -NHRMRGAALEKAIEQDVAEGLIPFYAVVTLGTTNSCAFDYLDECGPVGNKHNLWIHVDA 271
Query: 121 AYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHDCSAMWVKNANHLTNTFFTDRVY 180
AYAGSA + PEY HL +G+E DSF FN H W+L N DCSAMW+K+ + + N F D +Y
Sbjct: 272 AYAGSAFICPEYRHLMKGIESADSFNFNPHXWMLVNFDCSAMWLKDPSWVVNAFNVDPLY 331
Query: 181 LKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLW 240
LKH M +PDY +HWQ PL RRFRALKLW
Sbjct: 332 LKHD---MQGSAPDY----------------------------RHWQIPLGRRFRALKLW 360
Query: 241 MTLRSYGLKGLQAYLRKHISLAKKFADLVEKDDRFELVCPPSMGLVCFRLKGDNDLTNQL 300
LR YG++ LQA++R+H + AK+F DL D RFEL +MGLVCFRLKG N+ L
Sbjct: 361 FVLRLYGVENLQAHIRRHCNFAKQFGDLCVADSRFELAAEINMGLVCFRLKGSNERNEAL 420
Query: 301 YERLMSHKQIYIIKASFQGRPFLRFVVTSPETNQCDVAFAWNEISHQSSEMN 352
+R+ I+++ A + FLR + S T D+ ++W E+S + EM
Sbjct: 421 LKRINGRGHIHLVPAKIKDVYFLRMAICSRFTQSEDMEYSWKEVSAAADEME 472
Score = 35.4 bits (80), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 20/31 (64%), Positives = 23/31 (74%)
Query: 194 DYTVMNWLGKALGLPEEFLNCSKGPGGGVIQ 224
+ +M+WLGK L LP EFL CS G GGGVIQ
Sbjct: 115 EVVMMDWLGKMLELPAEFLACSGGKGGGVIQ 145
>pdb|4E1O|A Chain A, Human Histidine Decarboxylase Complex With Histidine
Methyl Ester (Hme)
pdb|4E1O|B Chain B, Human Histidine Decarboxylase Complex With Histidine
Methyl Ester (Hme)
pdb|4E1O|C Chain C, Human Histidine Decarboxylase Complex With Histidine
Methyl Ester (Hme)
pdb|4E1O|D Chain D, Human Histidine Decarboxylase Complex With Histidine
Methyl Ester (Hme)
pdb|4E1O|E Chain E, Human Histidine Decarboxylase Complex With Histidine
Methyl Ester (Hme)
pdb|4E1O|F Chain F, Human Histidine Decarboxylase Complex With Histidine
Methyl Ester (Hme)
Length = 481
Score = 298 bits (763), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 146/344 (42%), Positives = 212/344 (61%), Gaps = 31/344 (9%)
Query: 1 MVSILAAKRKKILDLTSAGPTVSENDIKSRLVAYASDQSNSSVEKSAIIGDVPVRQLRSD 60
++++LAA++ KIL++ ++ P E+ + +RLVAYASDQ++SSVEK+ +I V ++ L D
Sbjct: 159 LIALLAARKNKILEMKTSEPDADESSLNARLVAYASDQAHSSVEKAGLISLVKMKFLPVD 218
Query: 61 DNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEELGPICQEYNIWLHVDA 120
DN LRG+AL A++ED +GL+P + ATLGTTG CAFD L ELGPIC +WLH+DA
Sbjct: 219 DNFSLRGEALQKAIEEDKQRGLVPVFVCATLGTTGVCAFDXLSELGPICAREGLWLHIDA 278
Query: 121 AYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHDCSAMWVKNANHLTNTFFTDRVY 180
AYAG+A L PE+ +G+EY DSF FN KW++ + DC+ WVK+ L TF + +Y
Sbjct: 279 AYAGTAFLCPEFRGFLKGIEYADSFTFNPSKWMMVHFDCTGFWVKDKYKLQQTFSVNPIY 338
Query: 181 LKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLW 240
L+H ++ G+ +F+ HWQ PLSRRFR++KLW
Sbjct: 339 LRHANS-------------------GVATDFM------------HWQIPLSRRFRSVKLW 367
Query: 241 MTLRSYGLKGLQAYLRKHISLAKKFADLVEKDDRFELVCPPSMGLVCFRLKGDNDLTNQL 300
+RS+G+K LQA++R +AK F LV D FE+ +GLV FRLKG N LT +
Sbjct: 368 FVIRSFGVKNLQAHVRHGTEMAKYFESLVRNDPSFEIPAKRHLGLVVFRLKGPNSLTENV 427
Query: 301 YERLMSHKQIYIIKASFQGRPFLRFVVTSPETNQCDVAFAWNEI 344
+ + ++++I A+ Q + +RF VTS T + D+ WN I
Sbjct: 428 LKEIAKAGRLFLIPATIQDKLIIRFTVTSQFTTRDDILRDWNLI 471
Score = 36.2 bits (82), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Query: 194 DYTVMNWLGKALGLPEEFL-NCSKGPGGGVIQ 224
+ VM+WL K LGLPE FL + GGGV+Q
Sbjct: 120 EMNVMDWLAKMLGLPEHFLHHHPSSQGGGVLQ 151
>pdb|2JIS|A Chain A, Human Cysteine Sulfinic Acid Decarboxylase (Csad) In
Complex With Plp.
pdb|2JIS|B Chain B, Human Cysteine Sulfinic Acid Decarboxylase (Csad) In
Complex With Plp
Length = 515
Score = 119 bits (298), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 94/341 (27%), Positives = 152/341 (44%), Gaps = 49/341 (14%)
Query: 31 LVAYASDQSNSSVEKSAI---IGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCL 87
L + S + + S++K A +G VR +++D+ G + + L + A+G +P +
Sbjct: 204 LALFTSKECHYSIQKGAAFLGLGTDSVRVVKADERGKMVPEDLERQIGMAEAEGAVPFLV 263
Query: 88 VATLGTTGTCAFDNLEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAF 147
AT GTT AFD LE + +CQ + +WLHVDAA+ GS LL + HL G++ DS A+
Sbjct: 264 SATSGTTVLGAFDPLEAIADVCQRHGLWLHVDAAWGGSVLLSQTHRHLLDGIQRADSVAW 323
Query: 148 NAHKWLLTNHDCSAMWVKN-ANHLTNTFFTDRVYLKHTDAPMNTQSPDYTVMNWLGKALG 206
N HK L CSA+ +++ +N L + YL D
Sbjct: 324 NPHKLLAAGLQCSALLLQDTSNLLKRCHGSQASYLFQQD--------------------- 362
Query: 207 LPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKKFA 266
+F + + G V+Q RR LKLW+ ++ G +GL+ + + LA+
Sbjct: 363 ---KFYDVALDTGDKVVQ-----CGRRVDCLKLWLMWKAQGDQGLERRIDQAFVLARYLV 414
Query: 267 DLVEKDDRFELVCPPSMGLVCF-----RLKGDND----------LTNQLYERLMSHKQIY 311
+ ++K + FELV P VCF L+G + + L ER++ +
Sbjct: 415 EEMKKREGFELVMEPEFVNVCFWFVPPSLRGKQESPDYHERLSKVAPVLKERMVKEGSMM 474
Query: 312 IIKASFQGRP-FLRFVVTSPETNQCDVAFAWNEISHQSSEM 351
I R F R VV + D+ F NE+ ++
Sbjct: 475 IGYQPHGTRGNFFRVVVANSALTCADMDFLLNELERLGQDL 515
>pdb|2OKJ|A Chain A, The X-Ray Crystal Structure Of The 67kda Isoform Of
Glutamic Acid Decarboxylase (Gad67)
pdb|2OKJ|B Chain B, The X-Ray Crystal Structure Of The 67kda Isoform Of
Glutamic Acid Decarboxylase (Gad67)
Length = 504
Score = 106 bits (264), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 100/376 (26%), Positives = 159/376 (42%), Gaps = 61/376 (16%)
Query: 1 MVSILAAKRKKILDLTSAGPTVSENDIKSRLVAYASDQSNSSVEKSAI---IGDVPVRQL 57
M SI+AA+ K ++ + G +LV + S+QS+ S++K+ G V +
Sbjct: 165 MYSIMAARYKYFPEVKTKGMAAV-----PKLVLFTSEQSHYSIKKAGAALGFGTDNVILI 219
Query: 58 RSDDNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEELGPICQEYNIWLH 117
+ ++ G + + E KG +P + AT GTT AFD ++E+ IC++YN+WLH
Sbjct: 220 KCNERGKIIPADFEAKILEAKQKGYVPFYVNATAGTTVYGAFDPIQEIADICEKYNLWLH 279
Query: 118 VDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHDCSAMWVKNANHLTNTFFTD 177
VDAA+ G L+ ++ H G+E +S +N H + CSA+ VK L
Sbjct: 280 VDAAWGGGLLMSRKHRHKLNGIERANSVTWNPHXMMGVLLQCSAILVKEKGILQGC---- 335
Query: 178 RVYLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRAL 237
N Y L P++ + S G IQ R
Sbjct: 336 -----------NQMCAGY---------LFQPDKQYDVSYDTGDKAIQ-----CGRHVDIF 370
Query: 238 KLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEKDDRFELVC--PPSMGLVCF-----RL 290
K W+ ++ G G + + K + LA+ ++ + FE+V P VCF L
Sbjct: 371 KFWLMWKAKGTVGFENQINKCLELAEYLYAKIKNREEFEMVFNGEPEHTNVCFWYIPQSL 430
Query: 291 KGDNDLTNQLYERLMSHKQIYIIKASF------------QGRP--FLRFVVTSPETNQCD 336
+G D + Q E+L HK IKA QG F R V+++P Q D
Sbjct: 431 RGVPD-SPQRREKL--HKVAPKIKALMMESGTTMVGYQPQGDKANFFRMVISNPAATQSD 487
Query: 337 VAFAWNEISHQSSEMN 352
+ F EI +++
Sbjct: 488 IDFLIEEIERLGQDLH 503
>pdb|3VP6|A Chain A, Structural Characterization Of Glutamic Acid
Decarboxylase; Insights Into The Mechanism Of
Autoinactivation
pdb|3VP6|B Chain B, Structural Characterization Of Glutamic Acid
Decarboxylase; Insights Into The Mechanism Of
Autoinactivation
Length = 511
Score = 105 bits (263), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 101/379 (26%), Positives = 157/379 (41%), Gaps = 69/379 (18%)
Query: 1 MVSILAAKRKKILDLTSAGPTVSENDIKSRLVAYASDQSNSSVEKSAI---IGDVPVRQL 57
M SI+AA+ K ++ + G +LV + S+QS+ S++K+ G V +
Sbjct: 168 MYSIMAARYKYFPEVKTKGMAAV-----PKLVLFTSEQSHYSIKKAGAALGFGTDNVILI 222
Query: 58 RSDDNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEELGPICQEYNIWLH 117
+ ++ G + + E KG +P + AT GTT AFD ++E+ IC++YN+WLH
Sbjct: 223 KCNERGKIIPADFEAKILEAKQKGYVPFYVNATAGTTVYGAFDPIQEIADICEKYNLWLH 282
Query: 118 VDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHDCSAMWVKNANHLTNTFFTD 177
VDAA+ G L+ ++ H G+E +S +N H + CSA+ VK L
Sbjct: 283 VDAAWGGGLLMSRKHRHKLNGIERANSVTWNPHXMMGVLLQCSAILVKEKGILQGCNQMH 342
Query: 178 RVYL----KHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRR 233
YL KH D +T G IQ R
Sbjct: 343 ASYLFQQDKHYDVSYDT----------------------------GDKAIQ-----CGRH 369
Query: 234 FRALKLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEKDDRFELVC--PPSMGLVCF--- 288
K W+ ++ G G + + K + LA+ ++ + FE+V P VCF
Sbjct: 370 VDIFKFWLMWKAKGTVGFENQINKCLELAEYLYAKIKNREEFEMVFNGEPEHTNVCFWYI 429
Query: 289 --RLKGDNDLTNQLYERLMSHKQIYIIKASF------------QGRP--FLRFVVTSPET 332
L+G D + Q E+L HK IKA QG F R V+++P
Sbjct: 430 PQSLRGVPD-SPQRREKL--HKVAPKIKALMMESGTTMVGYQPQGDKANFFRMVISNPAA 486
Query: 333 NQCDVAFAWNEISHQSSEM 351
Q D+ F EI ++
Sbjct: 487 TQSDIDFLIEEIERLGQDL 505
>pdb|2OKK|A Chain A, The X-Ray Crystal Structure Of The 65kda Isoform Of
Glutamic Acid Decarboxylase (Gad65)
Length = 497
Score = 102 bits (255), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 90/353 (25%), Positives = 148/353 (41%), Gaps = 60/353 (16%)
Query: 20 PTVSENDIKS--RLVAYASDQSNSSVEKSAI---IGDVPVRQLRSDDNGVLRGDALLTAV 74
P V E + + RL+A+ S+ S+ S++K A IG V ++ D+ G + L +
Sbjct: 173 PEVKEKGMAALPRLIAFTSEHSHFSLKKGAAALGIGTDSVILIKCDERGKMIPSDLERRI 232
Query: 75 KEDLAKGLIPCCLVATLGTTGTCAFDNLEELGPICQEYNIWLHVDAAYAGSALLLPEYAH 134
E KG +P + AT GTT AFD L + IC++Y IW+HVDAA+ G L+ ++
Sbjct: 233 LEAKQKGFVPFLVSATAGTTVYGAFDPLLAVADICKKYKIWMHVDAAWGGGLLMSRKHKW 292
Query: 135 LKRGLEYVDSFAFNAHKWLLTNHDCSAMWVKNANHLTNTFFTDRVYL----KHTDAPMNT 190
G+E +S +N H + CSA+ V+ + N YL KH D +T
Sbjct: 293 KLSGVERANSVTWNPHXMMGVPLQCSALLVREEGLMQNCNQMHASYLFQQDKHYDLSYDT 352
Query: 191 QSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKG 250
++ L C R KLW+ R+ G G
Sbjct: 353 G-----------------DKALQC----------------GRHVDVFKLWLMWRAKGTTG 379
Query: 251 LQAYLRKHISLAKKFADLVEKDDRFELVC--PPSMGLVCF-------RLKGDND------ 295
+A++ K + LA+ ++++ + +E+V P VCF R DN+
Sbjct: 380 FEAHVDKCLELAEYLYNIIKNREGYEMVFDGKPQHTNVCFWYIPPSLRTLEDNEERMSRL 439
Query: 296 --LTNQLYERLMSHKQIYIIKASFQGRP-FLRFVVTSPETNQCDVAFAWNEIS 345
+ + R+M + + + F R V+++P D+ F EI
Sbjct: 440 SKVAPVIKARMMEYGTTMVSYQPLGDKVNFFRMVISNPAATHQDIDFLIEEIE 492
>pdb|2QMA|A Chain A, Crystal Structure Of Glutamate Decarboxylase Domain Of
Diaminobutyrate-Pyruvate Transaminase And
L-2,4-Diaminobutyrate Decarboxylase From Vibrio
Parahaemolyticus
pdb|2QMA|B Chain B, Crystal Structure Of Glutamate Decarboxylase Domain Of
Diaminobutyrate-Pyruvate Transaminase And
L-2,4-Diaminobutyrate Decarboxylase From Vibrio
Parahaemolyticus
Length = 497
Score = 89.7 bits (221), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 75/312 (24%), Positives = 139/312 (44%), Gaps = 41/312 (13%)
Query: 26 DIKSRLVAYASDQSNSSVEKSAI---IGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGL 82
D +L S +S+ +V+KSA +G+ V + ++ +G L + + A+GL
Sbjct: 198 DYADKLRIVCSKKSHFTVQKSASWXGLGEKAVXTVDANADGTXDITKLDEVIAQAKAEGL 257
Query: 83 IPCCLVATLGTTGTCAFDNLEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYV 142
IP +V T GTT A D+L+ + +++ W HVD AY G AL+L + +G+E
Sbjct: 258 IPFAIVGTAGTTDHGAIDDLDFIADXAVKHDXWXHVDGAYGG-ALILSSHKSRLKGVERA 316
Query: 143 DSFAFNAHKWLLTNHDCSAMWVKNANHLTNTFFTDRVYLKHTDAPMNTQSPDYTVMNWLG 202
S + + HK C A+ V + ++ + L H D +N + + + N +
Sbjct: 317 HSISVDFHKLFYQTISCGALLVNDKSNF-------KFLLHHADY-LNREHDE--LPNLVD 366
Query: 203 KALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLA 262
K++ ++RF ALK++ T ++ G K L ++
Sbjct: 367 KSIA-----------------------TTKRFDALKVFXTXQNVGPKALGDXYDHLLAQT 403
Query: 263 KKFADLVEKDDRFELVCPPSMGLVCFRLKGD----NDLTNQLYERLMSHKQIYIIKASFQ 318
+ AD + +D+FEL+ PS+ V FR + ++L L ++ + +
Sbjct: 404 LEVADXIRTNDQFELLAEPSLSTVLFRATHETADLDELNKALRLEALTRGIAVLGETIVD 463
Query: 319 GRPFLRFVVTSP 330
G+ L+F + +P
Sbjct: 464 GKTALKFTILNP 475
>pdb|3F9T|A Chain A, Crystal Structure Of L-tyrosine Decarboxylase Mfna (ec
4.1.1.25) (np_247014.1) From Methanococcus Jannaschii At
2.11 A Resolution
pdb|3F9T|B Chain B, Crystal Structure Of L-tyrosine Decarboxylase Mfna (ec
4.1.1.25) (np_247014.1) From Methanococcus Jannaschii At
2.11 A Resolution
Length = 397
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 54/114 (47%), Gaps = 6/114 (5%)
Query: 87 LVATLGTTGTCAFDNLEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFA 146
++ GTT DN+EEL I +E NI++HVDAA+ G + + + K+G+ Y F+
Sbjct: 175 IIGIAGTTELGTIDNIEELSKIAKENNIYIHVDAAFGGLVIPFLDDKYKKKGVNYKFDFS 234
Query: 147 FNAHKWLLTNHDCSAMWVKNANHLTNTFFTDRVYLKH--TDAPMNTQSPDYTVM 198
+ H + + L F D Y ++ DAP T++ T++
Sbjct: 235 LGVDSITIDPHKXGHCPIPSGGIL----FKDIGYKRYLDVDAPYLTETRQATIL 284
>pdb|3NNK|A Chain A, Biochemical And Structural Characterization Of A
Ureidoglycine Aminotransferase In The Klebsiella
Pneumoniae Uric Acid Catabolic Pathway
pdb|3NNK|B Chain B, Biochemical And Structural Characterization Of A
Ureidoglycine Aminotransferase In The Klebsiella
Pneumoniae Uric Acid Catabolic Pathway
pdb|3NNK|C Chain C, Biochemical And Structural Characterization Of A
Ureidoglycine Aminotransferase In The Klebsiella
Pneumoniae Uric Acid Catabolic Pathway
pdb|3NNK|D Chain D, Biochemical And Structural Characterization Of A
Ureidoglycine Aminotransferase In The Klebsiella
Pneumoniae Uric Acid Catabolic Pathway
pdb|3NNK|E Chain E, Biochemical And Structural Characterization Of A
Ureidoglycine Aminotransferase In The Klebsiella
Pneumoniae Uric Acid Catabolic Pathway
pdb|3NNK|F Chain F, Biochemical And Structural Characterization Of A
Ureidoglycine Aminotransferase In The Klebsiella
Pneumoniae Uric Acid Catabolic Pathway
pdb|3NNK|G Chain G, Biochemical And Structural Characterization Of A
Ureidoglycine Aminotransferase In The Klebsiella
Pneumoniae Uric Acid Catabolic Pathway
pdb|3NNK|H Chain H, Biochemical And Structural Characterization Of A
Ureidoglycine Aminotransferase In The Klebsiella
Pneumoniae Uric Acid Catabolic Pathway
pdb|3NNK|J Chain J, Biochemical And Structural Characterization Of A
Ureidoglycine Aminotransferase In The Klebsiella
Pneumoniae Uric Acid Catabolic Pathway
pdb|3NNK|K Chain K, Biochemical And Structural Characterization Of A
Ureidoglycine Aminotransferase In The Klebsiella
Pneumoniae Uric Acid Catabolic Pathway
pdb|3NNK|L Chain L, Biochemical And Structural Characterization Of A
Ureidoglycine Aminotransferase In The Klebsiella
Pneumoniae Uric Acid Catabolic Pathway
pdb|3NNK|M Chain M, Biochemical And Structural Characterization Of A
Ureidoglycine Aminotransferase In The Klebsiella
Pneumoniae Uric Acid Catabolic Pathway
pdb|3NNK|O Chain O, Biochemical And Structural Characterization Of A
Ureidoglycine Aminotransferase In The Klebsiella
Pneumoniae Uric Acid Catabolic Pathway
pdb|3NNK|P Chain P, Biochemical And Structural Characterization Of A
Ureidoglycine Aminotransferase In The Klebsiella
Pneumoniae Uric Acid Catabolic Pathway
pdb|3NNK|R Chain R, Biochemical And Structural Characterization Of A
Ureidoglycine Aminotransferase In The Klebsiella
Pneumoniae Uric Acid Catabolic Pathway
pdb|3NNK|S Chain S, Biochemical And Structural Characterization Of A
Ureidoglycine Aminotransferase In The Klebsiella
Pneumoniae Uric Acid Catabolic Pathway
Length = 411
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 22/45 (48%)
Query: 76 EDLAKGLIPCCLVATLGTTGTCAFDNLEELGPICQEYNIWLHVDA 120
ED K + P L+ G T T L ELG IC+ Y+ + DA
Sbjct: 131 EDAVKRIRPRLLLTVQGDTSTTMLQPLAELGEICRRYDALFYTDA 175
>pdb|2Z67|A Chain A, Crystal Structure Of Archaeal O-phosphoseryl-trna(sec)
Selenium Transferase (sepsecs)
pdb|2Z67|B Chain B, Crystal Structure Of Archaeal O-phosphoseryl-trna(sec)
Selenium Transferase (sepsecs)
pdb|2Z67|C Chain C, Crystal Structure Of Archaeal O-phosphoseryl-trna(sec)
Selenium Transferase (sepsecs)
pdb|2Z67|D Chain D, Crystal Structure Of Archaeal O-phosphoseryl-trna(sec)
Selenium Transferase (sepsecs)
Length = 456
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 44/84 (52%), Gaps = 4/84 (4%)
Query: 73 AVKEDLAKGLIPCCLVATLGTTGTCAFDNLEELGPICQEYNIWLHVDAAYAGSALLLPEY 132
A+K+++ G PC L +TL D++ E+ IC+ Y+I ++ AYA E
Sbjct: 222 AIKKEIELGNRPCVL-STLTFFPPRNSDDIVEIAKICENYDIPHIINGAYAIQNNYYLE- 279
Query: 133 AHLKRGLEY-VDSFAFNAHKWLLT 155
LK+ +Y VD+ ++ K LLT
Sbjct: 280 -KLKKAFKYRVDAVVSSSDKNLLT 302
>pdb|3HL2|A Chain A, The Crystal Structure Of The Human Sepsecs-Trnasec Complex
pdb|3HL2|B Chain B, The Crystal Structure Of The Human Sepsecs-Trnasec Complex
pdb|3HL2|C Chain C, The Crystal Structure Of The Human Sepsecs-Trnasec Complex
pdb|3HL2|D Chain D, The Crystal Structure Of The Human Sepsecs-Trnasec Complex
Length = 501
Score = 33.9 bits (76), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 32/65 (49%), Gaps = 5/65 (7%)
Query: 64 VLRGDALLTAVK--EDLAKGLIPCCLVATLGTTGTCAF---DNLEELGPICQEYNIWLHV 118
VL GD L T +K E + L P C++ TT A D LEEL IC Y+I V
Sbjct: 192 VLEGDELRTDLKAVEAKVQELGPDCILCIHSTTSCFAPRVPDRLEELAVICANYDIPHIV 251
Query: 119 DAAYA 123
+ AY
Sbjct: 252 NNAYG 256
>pdb|3MC6|C Chain C, Crystal Structure Of Scdpl1
Length = 497
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 20/84 (23%), Positives = 38/84 (45%), Gaps = 6/84 (7%)
Query: 100 DNLEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKR------GLEYVDSFAFNAHKWL 153
D++E LG I Q+Y + LHVD+ + E A K + V S + + HK+
Sbjct: 223 DDIEGLGKIAQKYKLPLHVDSCLGSFIVSFMEKAGYKNLPLLDFRVPGVTSISCDTHKYG 282
Query: 154 LTNHDCSAMWVKNANHLTNTFFTD 177
S + +N++ + ++ +
Sbjct: 283 FAPKGSSVIMYRNSDLRMHQYYVN 306
>pdb|2FCJ|A Chain A, Structure Of Small Toprim Domain Protein From Bacillus
Stearothermophilus.
pdb|2FCJ|B Chain B, Structure Of Small Toprim Domain Protein From Bacillus
Stearothermophilus.
pdb|2FCJ|C Chain C, Structure Of Small Toprim Domain Protein From Bacillus
Stearothermophilus
Length = 119
Score = 30.4 bits (67), Expect = 1.7, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 29/62 (46%), Gaps = 11/62 (17%)
Query: 88 VATLGTTGTCAFDNLEELGPICQEYNIWLHVDAAYAGSAL------LLPEYAHLKRGLEY 141
V + T GT + LEEL + Y+++L DA AG L + PE HL Y
Sbjct: 27 VVIVCTNGTISDARLEELADELEGYDVYLLADADEAGEKLRRQFRRMFPEAEHL-----Y 81
Query: 142 VD 143
+D
Sbjct: 82 ID 83
>pdb|2I5R|A Chain A, Structure Of Small Toprim Domain-containing Protein From
B. Stearothermophilus In Complex With Mg2+
pdb|2I5R|B Chain B, Structure Of Small Toprim Domain-containing Protein From
B. Stearothermophilus In Complex With Mg2+
pdb|2I5R|C Chain C, Structure Of Small Toprim Domain-containing Protein From
B. Stearothermophilus In Complex With Mg2+
Length = 122
Score = 30.4 bits (67), Expect = 1.7, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 29/62 (46%), Gaps = 11/62 (17%)
Query: 88 VATLGTTGTCAFDNLEELGPICQEYNIWLHVDAAYAGSAL------LLPEYAHLKRGLEY 141
V + T GT + LEEL + Y+++L DA AG L + PE HL Y
Sbjct: 30 VVIVCTNGTISDARLEELADELEGYDVYLLADADEAGEKLRRQFRRMFPEAEHL-----Y 84
Query: 142 VD 143
+D
Sbjct: 85 ID 86
>pdb|3BC8|A Chain A, Crystal Structure Of Mouse Selenocysteine Synthase
pdb|3BCA|A Chain A, Crystal Structure Of Mouse Selenocysteine Synthase, Sodium
Iodide Soak
pdb|3BCB|A Chain A, Crystal Structure Of Mouse Selenocysteine Synthase, Sodium
Phosphate Soak
Length = 450
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 30/65 (46%), Gaps = 5/65 (7%)
Query: 64 VLRGDALLTAVKEDLAK--GLIP---CCLVATLGTTGTCAFDNLEELGPICQEYNIWLHV 118
VL GD L T +K AK L P CL +T D LEEL IC Y+I V
Sbjct: 174 VLEGDELRTDLKAVEAKIQELGPEHILCLHSTTACFAPRVPDRLEELAVICANYDIPHVV 233
Query: 119 DAAYA 123
+ AY
Sbjct: 234 NNAYG 238
>pdb|1V72|A Chain A, Crystal Structure Of Phenylserine Aldolase From
Pseudomonas Putida
Length = 356
Score = 29.6 bits (65), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 36/74 (48%), Gaps = 9/74 (12%)
Query: 84 PCCLVATLGT-TGTC-AFDNLEELGPICQEYNIWLHVDAAYAGSALL----LPEYAHLKR 137
P C+ T T G+ D +E +G +C+ ++ LH+D + +AL+ P K
Sbjct: 142 PACVSITQATEVGSIYTLDEIEAIGDVCKSSSLGLHMDGSRFANALVSLGCSPAEMTWKA 201
Query: 138 GLEYVDSFAFNAHK 151
G VD+ +F A K
Sbjct: 202 G---VDALSFGATK 212
>pdb|3MC6|A Chain A, Crystal Structure Of Scdpl1
Length = 497
Score = 28.9 bits (63), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 19/84 (22%), Positives = 37/84 (44%), Gaps = 6/84 (7%)
Query: 100 DNLEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKR------GLEYVDSFAFNAHKWL 153
D++E LG I Q+Y + LHVD+ + E A K + V S + + H +
Sbjct: 223 DDIEGLGKIAQKYKLPLHVDSCLGSFIVSFMEKAGYKNLPLLDFRVPGVTSISCDTHXYG 282
Query: 154 LTNHDCSAMWVKNANHLTNTFFTD 177
S + +N++ + ++ +
Sbjct: 283 FAPKGSSVIMYRNSDLRMHQYYVN 306
>pdb|2CH1|A Chain A, Structure Of Anopheles Gambiae 3-Hydroxykynurenine
Transaminase
pdb|2CH1|B Chain B, Structure Of Anopheles Gambiae 3-Hydroxykynurenine
Transaminase
pdb|2CH1|C Chain C, Structure Of Anopheles Gambiae 3-Hydroxykynurenine
Transaminase
pdb|2CH1|D Chain D, Structure Of Anopheles Gambiae 3-Hydroxykynurenine
Transaminase
pdb|2CH2|A Chain A, Structure Of The Anopheles Gambiae 3-Hydroxykynurenine
Transaminase In Complex With Inhibitor
pdb|2CH2|B Chain B, Structure Of The Anopheles Gambiae 3-Hydroxykynurenine
Transaminase In Complex With Inhibitor
pdb|2CH2|C Chain C, Structure Of The Anopheles Gambiae 3-Hydroxykynurenine
Transaminase In Complex With Inhibitor
pdb|2CH2|D Chain D, Structure Of The Anopheles Gambiae 3-Hydroxykynurenine
Transaminase In Complex With Inhibitor
Length = 396
Score = 28.9 bits (63), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 20/38 (52%)
Query: 84 PCCLVATLGTTGTCAFDNLEELGPICQEYNIWLHVDAA 121
P CL T G + + LE +G IC +++ L VDA
Sbjct: 144 PKCLFLTHGDSSSGLLQPLEGVGQICHQHDCLLIVDAV 181
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.134 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,992,504
Number of Sequences: 62578
Number of extensions: 466791
Number of successful extensions: 1086
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1054
Number of HSP's gapped (non-prelim): 35
length of query: 367
length of database: 14,973,337
effective HSP length: 100
effective length of query: 267
effective length of database: 8,715,537
effective search space: 2327048379
effective search space used: 2327048379
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)