RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy3048
(367 letters)
>4e1o_A HDC, histidine decarboxylase; lyase; HET: PLP PVH; 1.80A {Homo
sapiens}
Length = 481
Score = 430 bits (1108), Expect = e-150
Identities = 145/351 (41%), Positives = 213/351 (60%), Gaps = 31/351 (8%)
Query: 1 MVSILAAKRKKILDLTSAGPTVSENDIKSRLVAYASDQSNSSVEKSAIIGDVPVRQLRSD 60
++++LAA++ KIL++ ++ P E+ + +RLVAYASDQ++SSVEK+ +I V ++ L D
Sbjct: 159 LIALLAARKNKILEMKTSEPDADESSLNARLVAYASDQAHSSVEKAGLISLVKMKFLPVD 218
Query: 61 DNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEELGPICQEYNIWLHVDA 120
DN LRG+AL A++ED +GL+P + ATLGTTG CAFD L ELGPIC +WLH+DA
Sbjct: 219 DNFSLRGEALQKAIEEDKQRGLVPVFVCATLGTTGVCAFDCLSELGPICAREGLWLHIDA 278
Query: 121 AYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHDCSAMWVKNANHLTNTFFTDRVY 180
AYAG+A L PE+ +G+EY DSF FN KW++ + DC+ WVK+ L TF + +Y
Sbjct: 279 AYAGTAFLCPEFRGFLKGIEYADSFTFNPSKWMMVHFDCTGFWVKDKYKLQQTFSVNPIY 338
Query: 181 LKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLW 240
L+H ++ + D+ HWQ PLSRRFR++KLW
Sbjct: 339 LRHANS---GVATDF----------------------------MHWQIPLSRRFRSVKLW 367
Query: 241 MTLRSYGLKGLQAYLRKHISLAKKFADLVEKDDRFELVCPPSMGLVCFRLKGDNDLTNQL 300
+RS+G+K LQA++R +AK F LV D FE+ +GLV FRLKG N LT +
Sbjct: 368 FVIRSFGVKNLQAHVRHGTEMAKYFESLVRNDPSFEIPAKRHLGLVVFRLKGPNSLTENV 427
Query: 301 YERLMSHKQIYIIKASFQGRPFLRFVVTSPETNQCDVAFAWNEISHQSSEM 351
+ + ++++I A+ Q + +RF VTS T + D+ WN I ++ +
Sbjct: 428 LKEIAKAGRLFLIPATIQDKLIIRFTVTSQFTTRDDILRDWNLIRDAATLI 478
Score = 42.4 bits (100), Expect = 2e-04
Identities = 17/29 (58%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
Query: 197 VMNWLGKALGLPEEFLNCSK-GPGGGVIQ 224
VM+WL K LGLPE FL+ GGGV+Q
Sbjct: 123 VMDWLAKMLGLPEHFLHHHPSSQGGGVLQ 151
>1js3_A DDC;, DOPA decarboxylase; carbidopa, parkinson'S disease, vitamin;
HET: PLP 142; 2.25A {Sus scrofa} SCOP: c.67.1.6 PDB:
1js6_A* 3rch_A* 3rbl_A 3rbf_A*
Length = 486
Score = 422 bits (1088), Expect = e-147
Identities = 158/351 (45%), Positives = 215/351 (61%), Gaps = 29/351 (8%)
Query: 1 MVSILAAKRKKILDLTSAGPTVSENDIKSRLVAYASDQSNSSVEKSAIIGDVPVRQLRSD 60
+V++LAA+ K + L +A P +++ + +LVAYASDQ++SSVE++ +IG V ++ + SD
Sbjct: 153 LVALLAARTKVVRRLQAASPGLTQGAVLEKLVAYASDQAHSSVERAGLIGGVKLKAIPSD 212
Query: 61 DNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEELGPICQEYNIWLHVDA 120
+R AL A++ D A GLIP +VATLGTT C+FDNL E+GPIC E +IWLHVDA
Sbjct: 213 GKFAMRASALQEALERDKAAGLIPFFVVATLGTTSCCSFDNLLEVGPICHEEDIWLHVDA 272
Query: 121 AYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHDCSAMWVKNANHLTNTFFTDRVY 180
AYAGSA + PE+ HL G+E+ DSF FN HKWLL N DCSAMWVK LT F D VY
Sbjct: 273 AYAGSAFICPEFRHLLNGVEFADSFNFNPHKWLLVNFDCSAMWVKRRTDLTGAFKLDPVY 332
Query: 181 LKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLW 240
LKH+ + DY HWQ PL RRFR+LK+W
Sbjct: 333 LKHSHQG-SGLITDYR----------------------------HWQLPLGRRFRSLKMW 363
Query: 241 MTLRSYGLKGLQAYLRKHISLAKKFADLVEKDDRFELVCPPSMGLVCFRLKGDNDLTNQL 300
R YG+KGLQAY+RKH+ L+ +F V +D RFE+ ++GLVCFRLKG + L L
Sbjct: 364 FVFRMYGVKGLQAYIRKHVQLSHEFEAFVLQDPRFEVCAEVTLGLVCFRLKGSDGLNEAL 423
Query: 301 YERLMSHKQIYIIKASFQGRPFLRFVVTSPETNQCDVAFAWNEISHQSSEM 351
ER+ S ++I+++ +G+ LRF + S + V AW I ++E+
Sbjct: 424 LERINSARKIHLVPCRLRGQFVLRFAICSRKVESGHVRLAWEHIRGLAAEL 474
Score = 45.9 bits (109), Expect = 1e-05
Identities = 18/28 (64%), Positives = 20/28 (71%)
Query: 197 VMNWLGKALGLPEEFLNCSKGPGGGVIQ 224
+M+WLGK L LPE FL G GGGVIQ
Sbjct: 118 MMDWLGKMLQLPEAFLAGEAGEGGGVIQ 145
>3k40_A Aromatic-L-amino-acid decarboxylase; PLP dependent protein, alpha
beta protein, alternative splicing, catecholamine
biosynthesis, lyase; HET: LLP; 1.75A {Drosophila
melanogaster}
Length = 475
Score = 421 bits (1084), Expect = e-146
Identities = 153/351 (43%), Positives = 216/351 (61%), Gaps = 32/351 (9%)
Query: 1 MVSILAAKRKKILDLTSAGPTVSENDIKSRLVAYASDQSNSSVEKSAIIGDVPVRQLRSD 60
+V++L AK KK+ ++ P E+ I +LV Y SDQ++SSVE++ ++G V +R ++
Sbjct: 153 LVALLGAKAKKLKEVKELHPEWDEHTILGKLVGYCSDQAHSSVERAGLLGGVKLRSVQ-S 211
Query: 61 DNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEELGPICQEYNIWLHVDA 120
+N +RG AL A+++D+A+GLIP V TLGTT +CAFD L+E GP+ ++N+W+HVDA
Sbjct: 212 ENHRMRGAALEKAIEQDVAEGLIPFYAVVTLGTTNSCAFDYLDECGPVGNKHNLWIHVDA 271
Query: 121 AYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHDCSAMWVKNANHLTNTFFTDRVY 180
AYAGSA + PEY HL +G+E DSF FN HKW+L N DCSAMW+K+ + + N F D +Y
Sbjct: 272 AYAGSAFICPEYRHLMKGIESADSFNFNPHKWMLVNFDCSAMWLKDPSWVVNAFNVDPLY 331
Query: 181 LKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLW 240
LKH +PDY +HWQ PL RRFRALKLW
Sbjct: 332 LKHDMQ---GSAPDY----------------------------RHWQIPLGRRFRALKLW 360
Query: 241 MTLRSYGLKGLQAYLRKHISLAKKFADLVEKDDRFELVCPPSMGLVCFRLKGDNDLTNQL 300
LR YG++ LQA++R+H + AK+F DL D RFEL +MGLVCFRLKG N+ L
Sbjct: 361 FVLRLYGVENLQAHIRRHCNFAKQFGDLCVADSRFELAAEINMGLVCFRLKGSNERNEAL 420
Query: 301 YERLMSHKQIYIIKASFQGRPFLRFVVTSPETNQCDVAFAWNEISHQSSEM 351
+R+ I+++ A + FLR + S T D+ ++W E+S + EM
Sbjct: 421 LKRINGRGHIHLVPAKIKDVYFLRMAICSRFTQSEDMEYSWKEVSAAADEM 471
Score = 47.0 bits (112), Expect = 5e-06
Identities = 20/28 (71%), Positives = 22/28 (78%)
Query: 197 VMNWLGKALGLPEEFLNCSKGPGGGVIQ 224
+M+WLGK L LP EFL CS G GGGVIQ
Sbjct: 118 MMDWLGKMLELPAEFLACSGGKGGGVIQ 145
>2qma_A Diaminobutyrate-pyruvate transaminase and L-2,4- diaminobutyrate
decarboxylase; structural genomics, APC91511.1,
glutamate decarboxylase; HET: MSE; 1.81A {Vibrio
parahaemolyticus}
Length = 497
Score = 385 bits (991), Expect = e-132
Identities = 78/359 (21%), Positives = 153/359 (42%), Gaps = 42/359 (11%)
Query: 1 MVSILAAKRKKILDLTSAGP-TVSENDIKSRLVAYASDQSNSSVEKSAI---IGDVPVRQ 56
+ ++ A+ L+ + D +L S +S+ +V+KSA +G+ V
Sbjct: 172 QMGLMLARDWIADKLSGHSIQKLGLPDYADKLRIVCSKKSHFTVQKSASWMGLGEKAVMT 231
Query: 57 LRSDDNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEELGPICQEYNIWL 116
+ ++ +G + L + + A+GLIP +V T GTT A D+L+ + + ++++W+
Sbjct: 232 VDANADGTMDITKLDEVIAQAKAEGLIPFAIVGTAGTTDHGAIDDLDFIADMAVKHDMWM 291
Query: 117 HVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHDCSAMWVKNANHLTNTFFT 176
HVD AY G AL+L + +G+E S + + HK C A+ V + ++
Sbjct: 292 HVDGAYGG-ALILSSHKSRLKGVERAHSISVDFHKLFYQTISCGALLVNDKSNF-KFLLH 349
Query: 177 DRVYLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRA 236
YL + P+ ++RF A
Sbjct: 350 HADYLNREH----DELPNLV----------------------------DKSIATTKRFDA 377
Query: 237 LKLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEKDDRFELVCPPSMGLVCFRLKGD--- 293
LK++MT+++ G K L ++ + AD++ +D+FEL+ PS+ V FR +
Sbjct: 378 LKVFMTMQNVGPKALGDMYDHLLAQTLEVADMIRTNDQFELLAEPSLSTVLFRATHETAD 437
Query: 294 -NDLTNQLYERLMSHKQIYIIKASFQGRPFLRFVVTSPETNQCDVAFAWNEISHQSSEM 351
++L L ++ + + G+ L+F + +P D ++I+ + E+
Sbjct: 438 LDELNKALRLEALTRGIAVLGETIVDGKTALKFTILNPCLTTSDFESLLSKINMLAVEL 496
Score = 31.5 bits (72), Expect = 0.50
Identities = 9/39 (23%), Positives = 13/39 (33%), Gaps = 13/39 (33%)
Query: 191 QSPDYT-----VMNWLGKALGLPEEFLNCSKGPGGGVIQ 224
Q+ T V+NWL L E+ G+
Sbjct: 134 QASSATYVEQKVVNWLCDKYDLSEK--------ADGIFT 164
>2okj_A Glutamate decarboxylase 1; PLP-dependent decarboxylase, lyase; HET:
LLP PLZ; 2.30A {Homo sapiens} PDB: 2okk_A*
Length = 504
Score = 381 bits (980), Expect = e-130
Identities = 86/373 (23%), Positives = 146/373 (39%), Gaps = 55/373 (14%)
Query: 1 MVSILAAKRKKILDLTSAGPTVSENDIKSRLVAYASDQSNSSVEKSAI---IGDVPVRQL 57
M SI+AA+ K ++ + G +LV + S+QS+ S++K+ G V +
Sbjct: 165 MYSIMAARYKYFPEVKTKG-----MAAVPKLVLFTSEQSHYSIKKAGAALGFGTDNVILI 219
Query: 58 RSDDNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEELGPICQEYNIWLH 117
+ ++ G + + E KG +P + AT GTT AFD ++E+ IC++YN+WLH
Sbjct: 220 KCNERGKIIPADFEAKILEAKQKGYVPFYVNATAGTTVYGAFDPIQEIADICEKYNLWLH 279
Query: 118 VDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHDCSAMWVKNANHLTNTFFTD 177
VDAA+ G L+ ++ H G+E +S +N HK + CSA+ VK L
Sbjct: 280 VDAAWGGGLLMSRKHRHKLNGIERANSVTWNPHKMMGVLLQCSAILVKEKGILQGCNQMC 339
Query: 178 RVYLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRAL 237
YL D + S D R
Sbjct: 340 AGYLFQPDKQYDV-SYDT----------------------------GDKAIQCGRHVDIF 370
Query: 238 KLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEKDDRFELVC--PPSMGLVCFRLKGD-- 293
K W+ ++ G G + + K + LA+ ++ + FE+V P VCF
Sbjct: 371 KFWLMWKAKGTVGFENQINKCLELAEYLYAKIKNREEFEMVFNGEPEHTNVCFWYIPQSL 430
Query: 294 -------------NDLTNQLYERLMSHKQIYIIKAS-FQGRPFLRFVVTSPETNQCDVAF 339
+ + ++ +M + F R V+++P Q D+ F
Sbjct: 431 RGVPDSPQRREKLHKVAPKIKALMMESGTTMVGYQPQGDKANFFRMVISNPAATQSDIDF 490
Query: 340 AWNEISHQSSEMN 352
EI +++
Sbjct: 491 LIEEIERLGQDLH 503
Score = 33.5 bits (77), Expect = 0.12
Identities = 4/39 (10%), Positives = 12/39 (30%), Gaps = 12/39 (30%)
Query: 191 QSPDYT-----VMNWLGKALGLPEEFLNCSKGPGGGVIQ 224
+P + + + + +G + G G+
Sbjct: 126 IAPVFVLMEQITLKKMREIVGWSSKD-------GDGIFS 157
>2jis_A Cysteine sulfinic acid decarboxylase; pyridoxal phosphate,
alternative splicing, pyridoxal phosphate (PLP),
structural genomics consortium (SGC); HET: PLP; 1.6A
{Homo sapiens}
Length = 515
Score = 373 bits (959), Expect = e-127
Identities = 93/371 (25%), Positives = 153/371 (41%), Gaps = 54/371 (14%)
Query: 1 MVSILAAKRKKILDLTSAGPTVSENDIKSRLVAYASDQSNSSVEKSAI---IGDVPVRQL 57
M ++ A+ ++ D G L + S + + S++K A +G VR +
Sbjct: 179 MYAVNLARYQRYPDCKQRGL-----RTLPPLALFTSKECHYSIQKGAAFLGLGTDSVRVV 233
Query: 58 RSDDNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEELGPICQEYNIWLH 117
++D+ G + + L + A+G +P + AT GTT AFD LE + +CQ + +WLH
Sbjct: 234 KADERGKMVPEDLERQIGMAEAEGAVPFLVSATSGTTVLGAFDPLEAIADVCQRHGLWLH 293
Query: 118 VDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHDCSAMWVKN-ANHLTNTFFT 176
VDAA+ GS LL + HL G++ DS A+N HK L CSA+ +++ +N L +
Sbjct: 294 VDAAWGGSVLLSQTHRHLLDGIQRADSVAWNPHKLLAAGLQCSALLLQDTSNLLKRCHGS 353
Query: 177 DRVYLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRA 236
YL D + + D RR
Sbjct: 354 QASYLFQQDKFYD-VALDTG----------------------------DKVVQCGRRVDC 384
Query: 237 LKLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEKDDRFELVCPPSMGLVCFRLKGD--- 293
LKLW+ ++ G +GL+ + + LA+ + ++K + FELV P VCF
Sbjct: 385 LKLWLMWKAQGDQGLERRIDQAFVLARYLVEEMKKREGFELVMEPEFVNVCFWFVPPSLR 444
Query: 294 ------------NDLTNQLYERLMSHKQIYIIKASFQGRP-FLRFVVTSPETNQCDVAFA 340
+ + L ER++ + I R F R VV + D+ F
Sbjct: 445 GKQESPDYHERLSKVAPVLKERMVKEGSMMIGYQPHGTRGNFFRVVVANSALTCADMDFL 504
Query: 341 WNEISHQSSEM 351
NE+ ++
Sbjct: 505 LNELERLGQDL 515
Score = 31.6 bits (72), Expect = 0.45
Identities = 6/39 (15%), Positives = 11/39 (28%), Gaps = 14/39 (35%)
Query: 191 QSPDYT-----VMNWLGKALGLPEEFLNCSKGPGGGVIQ 224
+P + V+ L +G G G+
Sbjct: 142 IAPVFVLMEEEVLRKLRALVGWSS---------GDGIFC 171
>3mc6_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxyl
phosphate; HET: LLP; 3.15A {Saccharomyces cerevisiae}
Length = 497
Score = 134 bits (338), Expect = 2e-35
Identities = 50/346 (14%), Positives = 109/346 (31%), Gaps = 71/346 (20%)
Query: 1 MVSILAAKRKKILDLTSAGPTVSENDIKSRLVAYASDQSNSSVEKSAIIGDVPVRQLRSD 60
+++ L+AK + P + A +++ +K+A + +R + D
Sbjct: 140 LLACLSAKMYALHHRGITEPEI-----------IAPVTAHAGFDKAAYYFGMKLRHVELD 188
Query: 61 -DNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEELGPICQEYNIWLHVD 119
+ + + ++ LV + D++E LG I Q+Y + LHVD
Sbjct: 189 PTTYQVDLGKVKKFINKN------TVLLVGSAPNFPHGIADDIEGLGKIAQKYKLPLHVD 242
Query: 120 AAYAG------SALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHDCSAMWVKNANHLTNT 173
+ L + V S + + HK+ S + +N++ +
Sbjct: 243 SCLGSFIVSFMEKAGYKNLPLLDFRVPGVTSISCDTHKYGFAPKGSSVIMYRNSDLRMHQ 302
Query: 174 FFTDRVYLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRR 233
++ +P + GG
Sbjct: 303 YYV---------------NPAW----------------------TGGLYGSPTLAGSRPG 325
Query: 234 FRALKLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEKD-DRFELVCPPSMGLVCFRLKG 292
+ W T+ + G G ++ + A KF ++++ +++ P ++ F K
Sbjct: 326 AIVVGCWATMVNMGENGYIESCQEIVGAAMKFKKYIQENIPDLDIMGNPRYSVISFSSKT 385
Query: 293 DNDLTNQLYE--RLMSHKQIYIIKASFQGRPFLRFVVTSPETNQCD 336
N ++E +S K + + Q L T + D
Sbjct: 386 LN-----IHELSDRLSKKGWHF--NALQKPVALHMAFTRLSAHVVD 424
>3f9t_A TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L-tyrosine
decarboxylase MFNA (EC 4.1.1.25), ST genomics; HET: PLP;
2.11A {Methanocaldococcus jannaschii}
Length = 397
Score = 131 bits (332), Expect = 5e-35
Identities = 55/335 (16%), Positives = 110/335 (32%), Gaps = 65/335 (19%)
Query: 1 MVSILAAKRKKILDLTSAGPTVSENDIKSRLVAYASDQSNSSVEKSAIIGDVPVRQLRSD 60
++++ K I ++ S EK + D+
Sbjct: 100 LMALRCIKNIWREKRRKGLSKNEHPKI------IVPITAHFSFEKGREMMDLEYIYAPIK 153
Query: 61 DNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEELGPICQEYNIWLHVDA 120
++ + + AV++ ++ GTT DN+EEL I +E NI++HVDA
Sbjct: 154 EDYTIDEKFVKDAVEDY-----DVDGIIGIAGTTELGTIDNIEELSKIAKENNIYIHVDA 208
Query: 121 AYAGSALLLPEYAHLKRGLEY-------VDSFAFNAHKWLLTNHDCSAMWVKNANHLTNT 173
A+ G + + + K+G+ Y VDS + HK +
Sbjct: 209 AFGGLVIPFLDDKYKKKGVNYKFDFSLGVDSITIDPHKMGHCPIPSG--GI--------- 257
Query: 174 FFTDRVYLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRR 233
F D Y ++ +L + + ++ G G
Sbjct: 258 LFKDIGYKRYL----------DVDAPYLT---ETRQATILGTR-VGFGGA---------- 293
Query: 234 FRALKLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEKDDRFELVCPPSMGLVCFRLKGD 293
+ LR G +G + + + + +++++ F+ V P + +V +
Sbjct: 294 ----CTYAVLRYLGREGQRKIVNECMENTLYLYKKLKENN-FKPVIEPILNIVAIEDEDY 348
Query: 294 NDLTNQLYERLMSHKQIYIIKASFQGRPFLRFVVT 328
++ +L +R I + LR VV
Sbjct: 349 KEVCKKLRDR-------GIYVSVCNCVKALRIVVM 376
>3mad_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxal
phosphate; HET: LLP; 2.00A {Symbiobacterium
thermophilum} PDB: 3maf_A* 3mau_A* 3mbb_A*
Length = 514
Score = 131 bits (330), Expect = 3e-34
Identities = 46/310 (14%), Positives = 90/310 (29%), Gaps = 54/310 (17%)
Query: 29 SRLVAYASDQSNSSVEKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLV 88
+ A ++++ +K+A + + + D + A+ A+ + +
Sbjct: 191 TAPEAVVPVSAHAAFDKAAQYFGIKLVRTPLDADYRADVAAMREAITPN------TVVVA 244
Query: 89 ATLGTTGTCAFDNLEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLK-----RGLEYVD 143
+ D + E+ + E+ I HVDA G L E LE V
Sbjct: 245 GSAPGYPHGVVDPIPEIAALAAEHGIGCHVDACLGGFILPWAERLGYPVPPFDFRLEGVT 304
Query: 144 SFAFNAHKWLLTNHDCSAMWVKNANHLTNTFFTDRVYLKHTDAPMNTQSPDYTVMNWLGK 203
S + + HK+ S + + + L +F +W G
Sbjct: 305 SVSADTHKYGYGAKGTSVILYRRPDLLHYQYFIAA--------------------DWPGG 344
Query: 204 ALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLAK 263
P S+ + W + S G +G R+ + A
Sbjct: 345 LYFSPT--FAGSR---------------PGALSATAWAAMLSLGEEGYLDATRRILQAAD 387
Query: 264 KFADLVEKDDRFELVCPPSMGLVCFRLKGDNDLTNQLYERLMSHKQIYIIKASFQGRPFL 323
+ V +++ P L + D Q+ E M+ + + P
Sbjct: 388 RLKAGVRAIPSLKILGDP---LWVIAVASDELNIYQVMEE-MAGRGWRL--NGLHRPPAF 441
Query: 324 RFVVTSPETN 333
+T T
Sbjct: 442 HVALTLRHTE 451
>2z67_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine
biosynthesis, seven-stranded BETE-strand, PYR
5'-phosphate; HET: PLP; 2.50A {Methanococcus
maripaludis} SCOP: c.67.1.9
Length = 456
Score = 128 bits (323), Expect = 1e-33
Identities = 43/282 (15%), Positives = 93/282 (32%), Gaps = 63/282 (22%)
Query: 34 YASDQSNSSVEKSAI---IGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLVAT 90
S+ S K+ + V + D + + + A+K+++ G PC +++T
Sbjct: 180 IYPYASHKSPIKAVSFVGMNMRLVETVLDGDRVYVPVEDIENAIKKEIELGNRPC-VLST 238
Query: 91 LGTTGTCAFDNLEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGL--EYVDSFAFN 148
L D++ E+ IC+ Y+I ++ AY A+ Y + VD+ +
Sbjct: 239 LTFFPPRNSDDIVEIAKICENYDIPHIINGAY---AIQNNYYLEKLKKAFKYRVDAVVSS 295
Query: 149 AHKWLLTNHDCSAMWVKNANHLTNTFFTDRVYLKHTDAPMNTQSPDYTVMNWLGKALGLP 208
+ K LLT ++ +A + +++ G+A P
Sbjct: 296 SDKNLLTPIGGGLVYSTDAEFI-----------------------KEISLSYPGRASATP 332
Query: 209 EEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKKFADL 268
+ ++L S G K ++ + K +L
Sbjct: 333 ---------------------------VVNTLVSLLSMGSKNYLELVKNQKNSKKLLDEL 365
Query: 269 VEK---DDRFELVCPPSMGLVCFRLKGDN-DLTNQLYERLMS 306
+ + + S C + D ++ +LY ++
Sbjct: 366 LNDLSKKTGGKFLDVESPIASCISVNSDPVEIAAKLYNLRVT 407
>3hbx_A GAD 1, glutamate decarboxylase 1; calmodulin-binding, lyase,
pyridoxal phosphate; HET: LLP; 2.67A {Arabidopsis
thaliana}
Length = 502
Score = 108 bits (272), Expect = 2e-26
Identities = 66/345 (19%), Positives = 112/345 (32%), Gaps = 62/345 (17%)
Query: 1 MVSILAAKRKKILDLTSAGPTVSENDIKSRLVAYASDQSNSSVEKSAIIGDVPVRQLRSD 60
M++ LA KRK + G V + +I EK A +V +++++
Sbjct: 131 MLAGLAFKRKWQNKRKAEGKPVDKPNI------VTGANVQVCWEKFARYFEVELKEVKLS 184
Query: 61 DNG-VLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEELGPICQEYN------ 113
+ V+ + V E+ C+ A LG+T F++++ L + E N
Sbjct: 185 EGYYVMDPQQAVDMVDEN------TICVAAILGSTLNGEFEDVKLLNDLLVEKNKETGWD 238
Query: 114 IWLHVDAAYAGSALLLPEYAHLKR-GLEYVDSFAFNAHKWLLTNHDCSAMWVKNANHLTN 172
+HVDAA G L V S + HK+ L + +N L
Sbjct: 239 TPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVIWRNKEDLPE 298
Query: 173 TFFTDRVYLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSR 232
+N+LG LN SK V
Sbjct: 299 ELIFH--------------------INYLGADQPTFT--LNFSK-GSSQV---------- 325
Query: 233 RFRALKLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEKDDRFELVC-PPSMGLVCFRLK 291
+ + L G +G + + + +EK +RF +V + LV F LK
Sbjct: 326 ----IAQYYQLIRLGHEGYRNVMENCRENMIVLREGLEKTERFNIVSKDEGVPLVAFSLK 381
Query: 292 GDNDLTNQLYERLMSHK----QIYIIKASFQGRPFLRFVVTSPET 332
+ T ++ Y + + Q LR V+ +
Sbjct: 382 DSSCHTEFEISDMLRRYGWIVPAYTMPPNAQHITVLRVVIREDFS 426
>2dgk_A GAD-beta, GADB, glutamate decarboxylase beta; gadbd1-14,
autoinhibition, substituted aldamine, lyase; HET: PLP;
1.90A {Escherichia coli} PDB: 2dgm_A* 1pmo_A* 2dgl_A*
1pmm_A* 3fz6_A* 3fz7_A 3fz8_A* 1xey_A*
Length = 452
Score = 97.3 bits (242), Expect = 2e-22
Identities = 57/295 (19%), Positives = 97/295 (32%), Gaps = 61/295 (20%)
Query: 34 YASDQSNSSVEKSAIIGDVPVRQLRSD-DNGVLRGDALLTAVKEDLAKGLIPCCLVATLG 92
K A DV +R++ + ++ A E+ +V T G
Sbjct: 143 LVCGPVQICWHKFARYWDVELREIPMRPGQLFMDPKRMIEACDEN------TIGVVPTFG 196
Query: 93 TTGTCAFDNLEELGPICQEYN------IWLHVDAAYAGSALLLPEYAHLKR---GLEYVD 143
T T ++ + L ++ I +H+DAA G L P A L V
Sbjct: 197 VTYTGNYEFPQPLHDALDKFQADTGIDIDMHIDAASGG--FLAPFVAPDIVWDFRLPRVK 254
Query: 144 SFAFNAHKWLLTNHDCSAMWVKNANHLTNTFFTDRVYLKHTDAPMNTQSPDYTVMNWLGK 203
S + + HK+ L C + ++ L + +++LG
Sbjct: 255 SISASGHKFGLAPLGCGWVIWRDEEALPQELVFN--------------------VDYLGG 294
Query: 204 ALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLAK 263
+G +N S+ P G VI + G +G +A
Sbjct: 295 QIGTFA--INFSR-PAGQVIA--------------QYYEFLRLGREGYTKVQNASYQVAA 337
Query: 264 KFADLVEKDDRFELVCP--PSMGL--VCFRLKGDNDLTNQLYE--RLMSHKQIYI 312
AD + K +E +C P G+ VCF+LK D LY+ + + +
Sbjct: 338 YLADEIAKLGPYEFICTGRPDEGIPAVCFKLKDGEDPGYTLYDLSERLRLRGWQV 392
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 85.5 bits (211), Expect = 4e-18
Identities = 71/348 (20%), Positives = 114/348 (32%), Gaps = 102/348 (29%)
Query: 23 SENDIKSRLVAYASDQSNSSVEKSAII---------GDVPVRQLRSDDNGVLRGDALLTA 73
NDI + + + V+ +I P + + AL A
Sbjct: 97 EGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSN--------SALFRA 148
Query: 74 VKEDLAKGLIPCCLVATL---GTTGTCAFDNLEELGPICQEYNIW-LHVDAAYAGSALLL 129
V E A+ LVA G T F+ L +L Y + + V SA L
Sbjct: 149 VGEGNAQ------LVAIFGGQGNTDDY-FEELRDL------YQTYHVLVGDLIKFSAETL 195
Query: 130 PEYAHLKRGLEYVDSFAFNAHKWLLTNHDCSAMWVKNANHLTNTFFTDRVYLKHTDAPMN 189
E E V + N +WL +N ++ D+ YL P++
Sbjct: 196 SELIRTTLDAEKVFTQGLNILEWL-----------ENPSNT-----PDKDYLLS--IPIS 237
Query: 190 ------TQSPDYTVMNWLGKALGL-PEEFLNCSKG---PGGGVI--------QHWQTPLS 231
Q Y V K LG P E + KG G++ W++
Sbjct: 238 CPLIGVIQLAHYVVT---AKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFV 294
Query: 232 RRFRALKL--WMTLRSYGLKGLQAYLRKHISL-AKKFADLVEKDDRFELVCPPS-MGLVC 287
+A+ + ++ G++ +AY + SL D +E ++ PS M L
Sbjct: 295 SVRKAITVLFFI-----GVRCYEAY--PNTSLPPSILEDSLENNEG-----VPSPM-LSI 341
Query: 288 FRLKGDN-----DLTNQLYERLMSHKQIYIIKASFQGRPFLRFVVTSP 330
L + + TN L + KQ+ I + G VV+ P
Sbjct: 342 SNLTQEQVQDYVNKTNS---HLPAGKQVEI--SLVNGA--KNLVVSGP 382
Score = 30.8 bits (69), Expect = 1.0
Identities = 26/145 (17%), Positives = 44/145 (30%), Gaps = 59/145 (40%)
Query: 10 KKILDLTS-AGP---TVSE---NDIKSR-------------------LVAYASDQSNS-S 42
K +L T P + + D+KS+ L + A + S
Sbjct: 1723 KGLLSATQFTQPALTLMEKAAFEDLKSKGLIPADATFAGHSLGEYAALASLA----DVMS 1778
Query: 43 VEKSAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNL 102
+E S + +V V RG + AV D G ++A + A +
Sbjct: 1779 IE-SLV--EV-VFY---------RGMTMQVAVPRD-ELGRSNYGMIA-INPGRVAASFSQ 1823
Query: 103 EELGPICQE-------------YNI 114
E L + + YN+
Sbjct: 1824 EALQYVVERVGKRTGWLVEIVNYNV 1848
>3bc8_A O-phosphoseryl-tRNA(SEC) selenium transferase; disorder-order
transition, phosphate-loop, pyridoxal phospha
selenocysteine synthase (SECS, sepsecs); HET: LLP; 1.65A
{Mus musculus} SCOP: c.67.1.9 PDB: 3bca_A* 3bcb_A*
Length = 450
Score = 57.7 bits (139), Expect = 2e-09
Identities = 36/233 (15%), Positives = 71/233 (30%), Gaps = 55/233 (23%)
Query: 42 SVEKSAIIGD---VPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCA 98
S KS + V + + D A+ ++E + + CL +T
Sbjct: 156 SCFKSMVTAGFEPVVIENVLEGDELRTDLKAVEAKIQELGPEHI--LCLHSTTACFAPRV 213
Query: 99 FDNLEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHD 158
D LEEL IC Y+I V+ AY + + +D+F + K +
Sbjct: 214 PDRLEELAVICANYDIPHVVNNAYGLQSSKCMHLIQQGARVGRIDAFVQSLDKNFMVPVG 273
Query: 159 CSAMWVKNANHLTNTFFTDRVYLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGP 218
+ + + +++ + G+A P
Sbjct: 274 GAII-----------AGFNEPFIQDISK------------MYPGRASASP---------- 300
Query: 219 GGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEK 271
+L + +TL S G G + L++ + + ++K
Sbjct: 301 -----------------SLDVLITLLSLGCSGYRKLLKERKEMFVYLSTQLKK 336
>3hl2_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine,
sepsecs, protein-RNA complex, alternative splicing,
cytoplasm, protein biosynthesis, pyridoxal phosphate,
selenium; HET: PLR SEP; 2.81A {Homo sapiens}
Length = 501
Score = 57.8 bits (139), Expect = 2e-09
Identities = 33/220 (15%), Positives = 67/220 (30%), Gaps = 52/220 (23%)
Query: 52 VPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEELGPICQE 111
V + + D A+ V+E + C+ +T D LEEL IC
Sbjct: 187 VVIENVLEGDELRTDLKAVEAKVQELGPDCI--LCIHSTTSCFAPRVPDRLEELAVICAN 244
Query: 112 YNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHDCSAMWVKNANHLT 171
Y+I V+ AY + + +D+F + K + + +
Sbjct: 245 YDIPHIVNNAYGVQSSKCMHLIQQGARVGRIDAFVQSLDKNFMVPVGGAII--------- 295
Query: 172 NTFFTDRVYLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLS 231
+ +++ + G+A P
Sbjct: 296 --AGFNDSFIQEISK------------MYPGRASASP----------------------- 318
Query: 232 RRFRALKLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEK 271
+L + +TL S G G + L++ + ++ ++K
Sbjct: 319 ----SLDVLITLLSLGSNGYKKLLKERKEMFSYLSNQIKK 354
>1ax4_A Tryptophanase; tryptophan biosynthesis, tryptophan indole-lyase,
pyridoxal 5'-phosphate, monovalent cation binding site;
HET: LLP; 2.10A {Proteus vulgaris} SCOP: c.67.1.2
Length = 467
Score = 45.9 bits (108), Expect = 1e-05
Identities = 21/122 (17%), Positives = 43/122 (35%), Gaps = 13/122 (10%)
Query: 48 IIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAF--DNLEEL 105
+ + D G L + + A ++ T + G NL+E+
Sbjct: 150 VTEKAFDSETYDDWKGDFDIKKLKENIAQHGADNIVAIVSTVTCNSAGGQPVSMSNLKEV 209
Query: 106 GPICQEYNIWLHVDAAYAGSALLL-----PEYAH------LKRGLEYVDSFAFNAHKWLL 154
I +++ I++ +D+A P+Y + + +Y D+ +A K L
Sbjct: 210 YEIAKQHGIFVVMDSARFCENAYFIKARDPKYKNATIKEVIFDMYKYADALTMSAKKDPL 269
Query: 155 TN 156
N
Sbjct: 270 LN 271
>2ez2_A Beta-tyrosinase, tyrosine phenol-lyase; PLP-dependent enzyme,
pyridoxal-5'-phosphate, domain lyase; 1.85A {Citrobacter
freundii} PDB: 2ez1_A 2vlf_A* 2vlh_A* 2yct_A* 1tpl_A
2tpl_A* 2ycn_A* 2yhk_A* 2ycp_A* 1c7g_A*
Length = 456
Score = 40.9 bits (95), Expect = 5e-04
Identities = 19/124 (15%), Positives = 38/124 (30%), Gaps = 13/124 (10%)
Query: 46 SAIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAF--DNLE 103
+ + L G + L + E A+ + CL T+ G N+
Sbjct: 139 DIVRDEAHDAGLNIAFKGDIDLKKLQKLIDEKGAENIAYICLAVTVNLAGGQPVSMANMR 198
Query: 104 ELGPICQEYNIWLHVDAA-YAGSALLL----PEYAH------LKRGLEYVDSFAFNAHKW 152
+ + + + I + DA +A + + + + Y D + K
Sbjct: 199 AVRELTEAHGIKVFYDATRCVENAYFIKEQEQGFENKSIAEIVHEMFSYADGCTMSGKKD 258
Query: 153 LLTN 156
L N
Sbjct: 259 CLVN 262
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 38.3 bits (88), Expect = 0.004
Identities = 52/412 (12%), Positives = 97/412 (23%), Gaps = 137/412 (33%)
Query: 54 VRQLRSDDNGVLRGDA------LLTAVKEDLAKGLIPCCLVATLGTTGTCAFDN--LEEL 105
+ +LR N ++ G + V + L C LE L
Sbjct: 144 LLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWL-NLKNCNSPETVLEML 202
Query: 106 GPIC------------QEYNIWLHVDAAYAGSALLLPEYAHLKRGL---------EYVDS 144
+ NI L + + A LL + + L + ++
Sbjct: 203 QKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPY-ENCLLVLLNVQNAKAWNA 261
Query: 145 FAFNAHKWLLTNHDCSAMWVKNANHLTNTFFTDRVYLKHTDAPMNTQSPDYT---VMNWL 201
F + K LLT + L+ T + L H + +PD ++ +L
Sbjct: 262 FNLSC-KILLTTRFKQ-----VTDFLSAAT-TTHISLDHHSMTL---TPDEVKSLLLKYL 311
Query: 202 G-KALGLPEEFLNCSKGP------------GGGVIQHWQ------------------TP- 229
+ LP E + P G +W+ P
Sbjct: 312 DCRPQDLPREV--LTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPA 369
Query: 230 -LSRRFRAL---------------KLWMTL------------------------RSYGLK 249
+ F L +W + + +
Sbjct: 370 EYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIP 429
Query: 250 GLQAYLRKHIS-LAKKFADLVEKDDRFELVCPPSMGLVCFRLKGDNDLTNQLYERLMSHK 308
+ L+ + +V+ + + + D Y + H
Sbjct: 430 SIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPY------LD--QYFYSHIGHH- 480
Query: 309 QIYIIKASFQGRPFLRFVVTSPETNQCDVAFAWNEISHQSSEMNLPRGSSSV 360
+K F D F +I H S+ N +
Sbjct: 481 ----LKNIEHPERMTLF-----RMVFLDFRFLEQKIRHDSTAWNASGSILNT 523
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 34.9 bits (79), Expect = 0.015
Identities = 6/29 (20%), Positives = 13/29 (44%), Gaps = 8/29 (27%)
Query: 24 ENDIK---SRLVAYASDQS-----NSSVE 44
+ +K + L YA D + +++E
Sbjct: 19 KQALKKLQASLKLYADDSAPALAIKATME 47
>2oqx_A Tryptophanase; lyase, pyridoxal phosphate, tryptophan catabolism;
HET: CME EPE; 1.90A {Escherichia coli} SCOP: c.67.1.2
PDB: 2c44_A 2v1p_A* 2v0y_A*
Length = 467
Score = 35.8 bits (82), Expect = 0.021
Identities = 31/172 (18%), Positives = 63/172 (36%), Gaps = 21/172 (12%)
Query: 1 MVSILAAKRKKILDLTSAGPTVSENDIKSRLVAYASDQSNSSVEKSAIIGDVPVRQLRSD 60
+ +L KR++ L + N ++ Q N ++ I + +R D
Sbjct: 105 YIPVLIKKREQEKGLDRSKMVAFSNYFFDTTQGHS--QINGCTVRNVYIKEAFDTGVRYD 162
Query: 61 DNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCA-----FDNLEELGPICQEYNIW 115
G + L ++E G + T+ + NL+ + I ++Y+I
Sbjct: 163 FKGNFDLEGLERGIEEV---GPNNVPYIVATITSNSAGGQPVSLANLKAMYSIAKKYDIP 219
Query: 116 LHVDAA-YAGSALLL----PEYAH------LKRGLEYVDSFAFNAHKWLLTN 156
+ +D+A +A +A + EY + +Y D A +A K +
Sbjct: 220 VVMDSARFAENAYFIKQREAEYKDWTIEQITRETYKYADMLAMSAKKDAMVP 271
>3lvm_A Cysteine desulfurase; structural genomics, montreal-kingston
bacterial structural genomics initiative, BSGI,
transferase; HET: PLP; 2.05A {Escherichia coli} PDB:
3lvk_A* 3lvl_B* 3lvj_A* 1p3w_B*
Length = 423
Score = 34.8 bits (81), Expect = 0.037
Identities = 15/67 (22%), Positives = 28/67 (41%), Gaps = 12/67 (17%)
Query: 60 DDNGVLRGDALLTAVKEDLAKGLIPCCLVATLGT---TGTCAFDNLEELGPICQEYNIWL 116
NG++ L A+++D LV+ + G ++ +G +C+ I
Sbjct: 146 QRNGIIDLKELEAAMRDDTI-------LVSIMHVNNEIGV--VQDIAAIGEMCRARGIIY 196
Query: 117 HVDAAYA 123
HVDA +
Sbjct: 197 HVDATQS 203
>2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate,
PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A
{Escherichia coli}
Length = 755
Score = 34.7 bits (79), Expect = 0.045
Identities = 26/136 (19%), Positives = 39/136 (28%), Gaps = 25/136 (18%)
Query: 79 AKGLIPCCLVATLGT-TGTCAFDNLEELGPICQEYNIWLHVDAA----------YAGSAL 127
G P V T T G C N +E + ++ + LH D A YA
Sbjct: 308 KAGQKPSYCVVTNCTYDGVCY--NAKEAQDLLEKTSDRLHFDEAWYGYARFNPIYADHYA 365
Query: 128 LLPEYAHLKRGLEYVDSFAFNAHKWL--LTNHDCSAMWVKNANHLTNTFFTDRVYLKHTD 185
+ E + + HK L L+ S + V+ +
Sbjct: 366 MRGEPGDHNGPTVFA---THSTHKLLNALSQ--ASYIHVRE-----GRGAINFSRFNQAY 415
Query: 186 APMNTQSPDYTVMNWL 201
T SP Y +
Sbjct: 416 MMHATTSPLYAICASN 431
>1iay_A ACC synthase 2, 1-aminocyclopropane-1-carboxylate synthase 2;
protein-cofactor-inhibitor complex, V6-dependent enzyme,
LYA; HET: PLP AVG; 2.70A {Solanum lycopersicum} SCOP:
c.67.1.4 PDB: 1iax_A*
Length = 428
Score = 34.2 bits (79), Expect = 0.053
Identities = 19/79 (24%), Positives = 32/79 (40%), Gaps = 8/79 (10%)
Query: 52 VPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLVAT-----LGTTGTCAFDNLEELG 106
+P+ S +N + A+ A + + L+ T LGTT D L+ +
Sbjct: 158 IPI-HCESSNNFKITSKAVKEAYENAQKSNIKVKGLILTNPSNPLGTT--LDKDTLKSVL 214
Query: 107 PICQEYNIWLHVDAAYAGS 125
++NI L D YA +
Sbjct: 215 SFTNQHNIHLVCDEIYAAT 233
>3piu_A 1-aminocyclopropane-1-carboxylate synthase; fruit ripening,
ethylene biosynthesis, lyase, pyridoxal 5'-P binding;
HET: LLP PLR; 1.35A {Malus domestica} PDB: 1m4n_A*
1m7y_A* 1ynu_A* 1b8g_A*
Length = 435
Score = 34.2 bits (79), Expect = 0.066
Identities = 20/79 (25%), Positives = 32/79 (40%), Gaps = 8/79 (10%)
Query: 52 VPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLVAT-----LGTTGTCAFDNLEELG 106
VP+ S + + AL A +E + L ++ T LGTT + L L
Sbjct: 161 VPI-HCTSSNGFQITETALEEAYQEAEKRNLRVKGVLVTNPSNPLGTT--MTRNELYLLL 217
Query: 107 PICQEYNIWLHVDAAYAGS 125
++ I L D Y+G+
Sbjct: 218 SFVEDKGIHLISDEIYSGT 236
>1svv_A Threonine aldolase; structural genomics, structural genomics of
pathogenic proto SGPP, protein structure initiative,
PSI; 2.10A {Leishmania major} SCOP: c.67.1.1
Length = 359
Score = 33.8 bits (78), Expect = 0.071
Identities = 13/62 (20%), Positives = 23/62 (37%), Gaps = 14/62 (22%)
Query: 94 TGTC-AFDNLEELGPICQEYNIWLHVD-------AAYAGSALLLPEYAHLKRGLEYVDSF 145
GT LE++ C+E+ ++L +D + + L L + A D F
Sbjct: 157 VGTQYTKQELEDISASCKEHGLYLFLDGARLASALSSPVNDLTLADIA------RLTDMF 210
Query: 146 AF 147
Sbjct: 211 YI 212
>1v72_A Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2.05A {Pseudomonas
putida} SCOP: c.67.1.1
Length = 356
Score = 32.2 bits (74), Expect = 0.26
Identities = 12/61 (19%), Positives = 24/61 (39%), Gaps = 14/61 (22%)
Query: 95 GTC-AFDNLEELGPICQEYNIWLHVD-------AAYAGSALLLPEYAHLKRGLEYVDSFA 146
G+ D +E +G +C+ ++ LH+D G + + VD+ +
Sbjct: 154 GSIYTLDEIEAIGDVCKSSSLGLHMDGSRFANALVSLGCSPAEMTWK------AGVDALS 207
Query: 147 F 147
F
Sbjct: 208 F 208
>2aeu_A Hypothetical protein MJ0158; selenocysteine synthase, PLP,
pyridoxal phosphate, HOMO- oligomerization, unknown
function; 1.70A {Methanocaldococcus jannaschii} SCOP:
c.67.1.8 PDB: 2aev_A*
Length = 374
Score = 32.1 bits (73), Expect = 0.31
Identities = 7/59 (11%), Positives = 18/59 (30%), Gaps = 4/59 (6%)
Query: 96 TCAFDNLEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEY-VDSFAFNAHKWL 153
+N +++ + + VD S + + L+ D + K +
Sbjct: 155 VIELENFKKVINTAKNKEAIVFVD---DASGARVRLLFNQPPALKLGADLVVTSTDKLM 210
>2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase,
structural genomics; HET: PLP; 2.40A {Archaeoglobus
fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A*
Length = 371
Score = 30.8 bits (70), Expect = 0.68
Identities = 18/112 (16%), Positives = 41/112 (36%), Gaps = 19/112 (16%)
Query: 60 DDNGVLRGDALLTAVKEDLAKGLIPCCLVATL---GTTGTCAFDNLEELGPICQEYNIWL 116
+ + + ++E +G + L G G +++++ +C EY++ L
Sbjct: 125 YPDYAITPENFAQTIEETKKRGEVV--LALITYPDGNYGNLP--DVKKIAKVCSEYDVPL 180
Query: 117 HVDAAYAGSALLLPEYAHLK---RGLEYVDSFAFNAHKWLLTNHDCSAMWVK 165
V+ AYA + + + D + HK + + M +K
Sbjct: 181 LVNGAYAI--------GRMPVSLKEIG-ADFIVGSGHKSMAASGPIGVMGMK 223
>1qgn_A Protein (cystathionine gamma-synthase); methionine biosynthesis,
pyridoxal 5'-phosphate, gamma-famil; HET: PLP; 2.90A
{Nicotiana tabacum} SCOP: c.67.1.3 PDB: 1i41_A* 1i48_A*
1i43_A*
Length = 445
Score = 30.3 bits (69), Expect = 0.97
Identities = 17/82 (20%), Positives = 33/82 (40%), Gaps = 19/82 (23%)
Query: 240 WMTLRSYGLKGLQAYLRKHISLAKKFADLVEKDDRFELVCPPSM---------------- 283
++ +R G+K L +++ S A + A+++E + V P +
Sbjct: 301 YLIIR--GMKTLHLRVQQQNSTALRMAEILEAHPKVRHVYYPGLQSHPEHHIAKKQMTGF 358
Query: 284 -GLVCFRLKGDNDLTNQLYERL 304
G V F + GD T + + L
Sbjct: 359 GGAVSFEVDGDLLTTAKFVDAL 380
>1o69_A Aminotransferase; structural genomics, unknown function; HET: X04;
1.84A {Campylobacter jejuni} SCOP: c.67.1.4 PDB: 1o62_A
1o61_A*
Length = 394
Score = 30.3 bits (69), Expect = 1.0
Identities = 20/95 (21%), Positives = 39/95 (41%), Gaps = 18/95 (18%)
Query: 101 NLEELGPICQEYNIWLHVDAAYA-GSALLLPEYAHLKRG-LEYVDSFAFNAHKW------ 152
++E+ IC+E +I L DAA A GS Y + G +++N +K
Sbjct: 137 KMDEIVEICKENDIVLIEDAAEALGS-----FYKNKALGTFGEFGVYSYNGNKIITTSGG 191
Query: 153 --LLTNHDCSAMWVKNANHLTNTFFTDRVYLKHTD 185
L+ + ++ A + + ++ +H D
Sbjct: 192 GMLIGKNK---EKIEKARFYSTQARENCLHYEHLD 223
>3pj0_A LMO0305 protein; structural genomics, joint center for structural
genomics, J protein structure initiative, PSI-biology,
lyase; HET: LLP MSE; 1.80A {Listeria monocytogenes}
Length = 359
Score = 30.4 bits (69), Expect = 1.0
Identities = 15/77 (19%), Positives = 29/77 (37%), Gaps = 8/77 (10%)
Query: 47 AIIGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTT-GTC-AFDNLEE 104
+ + L + + +L D + + + + + G AF+ LE+
Sbjct: 109 KELQQITPLLLGTAN-QLLTIDDIKSLREPV---SSV--LIELPQREIGGQLPAFEELEK 162
Query: 105 LGPICQEYNIWLHVDAA 121
+ C E I LH+D A
Sbjct: 163 ISEYCHEQGISLHLDGA 179
>1cs1_A CGS, protein (cystathionine gamma-synthase); lyase, LLP-dependent
enzymes, methionine biosynthesis; HET: LLP DHD; 1.50A
{Escherichia coli} SCOP: c.67.1.3
Length = 386
Score = 30.2 bits (69), Expect = 1.1
Identities = 13/82 (15%), Positives = 26/82 (31%), Gaps = 19/82 (23%)
Query: 240 WMTLRSYGLKGLQAYLRKHISLAKKFADLVEKDDRFELVCPPSM---------------- 283
++ LR GL+ L + A+ ++ + + PS+
Sbjct: 239 YLLLR--GLRTLVPRMELAQRNAQAIVKYLQTQPLVKKLYHPSLPENQGHEIAARQQKGF 296
Query: 284 -GLVCFRLKGDNDLTNQLYERL 304
++ F L GD + L
Sbjct: 297 GAMLSFELDGDEQTLRRFLGGL 318
>1eg5_A Aminotransferase; PLP-dependent enzymes, iron-sulfur-cluster
synthesis, C-S BE transferase; HET: PLP; 2.00A
{Thermotoga maritima} SCOP: c.67.1.3 PDB: 1ecx_A*
Length = 384
Score = 30.1 bits (69), Expect = 1.1
Identities = 7/24 (29%), Positives = 13/24 (54%), Gaps = 2/24 (8%)
Query: 102 LEELGPICQEYN--IWLHVDAAYA 123
+E++ I ++ N +HVDA
Sbjct: 158 VEDVTRIVKKKNKETLVHVDAVQT 181
>3nmy_A Xometc, cystathionine gamma-lyase-like protein; Cys-Met metabolism
PLP-dependent enzyme family, CYST gamma lyase,
pyridoxal-phosphate; HET: PLP; 2.07A {Xanthomonas oryzae
PV} PDB: 3e6g_A* 3nnp_A*
Length = 400
Score = 30.2 bits (69), Expect = 1.2
Identities = 21/82 (25%), Positives = 29/82 (35%), Gaps = 19/82 (23%)
Query: 240 WMTLRSYGLKGLQAYLRKHISLAKKFADLVEKDDRFELVCPPSM---------------- 283
++ LR GLK L +R H A A +E E V P +
Sbjct: 255 FLALR--GLKTLPLRMRAHCENALALAQWLETHPAIEKVIYPGLASHPQHVLAKRQMSGF 312
Query: 284 -GLVCFRLKGDNDLTNQLYERL 304
G+V LKG D + E+
Sbjct: 313 GGIVSIVLKGGFDAAKRFCEKT 334
>2dou_A Probable N-succinyldiaminopimelate aminotransfera; PLP-dependent
enzyme, structural genomics, NPPSFA; HET: EPE; 2.30A
{Thermus thermophilus}
Length = 376
Score = 29.8 bits (68), Expect = 1.5
Identities = 9/31 (29%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Query: 94 TGTCA-FDNLEELGPICQEYNIWLHVDAAYA 123
TG A + EE + +++ +WL D Y
Sbjct: 171 TGAVADWGYFEEALGLARKHGLWLIHDNPYV 201
>2ch1_A 3-hydroxykynurenine transaminase; PLP-enzyme, kynurenine pathway,
transferase; HET: LLP; 2.4A {Anopheles gambiae} SCOP:
c.67.1.3 PDB: 2ch2_A*
Length = 396
Score = 29.5 bits (67), Expect = 1.5
Identities = 20/98 (20%), Positives = 33/98 (33%), Gaps = 27/98 (27%)
Query: 54 VRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEELGPICQEYN 113
VR + + + L A++ K L T G + + LE +G IC +++
Sbjct: 119 VRTIEGPPDRPFSLETLARAIELHQPKCLF-----LTHGDSSSGLLQPLEGVGQICHQHD 173
Query: 114 I-------------------WLHVDAAYAGS--ALLLP 130
W +DA Y G+ L P
Sbjct: 174 CLLIVDAVASLCGVPFYMDKW-EIDAVYTGAQKVLGAP 210
>3ndn_A O-succinylhomoserine sulfhydrylase; seattle structural genomics
center for infectious disease, S mycobacterium, PLP,
schiff base; HET: LLP; 1.85A {Mycobacterium
tuberculosis}
Length = 414
Score = 29.5 bits (67), Expect = 1.7
Identities = 15/94 (15%), Positives = 33/94 (35%), Gaps = 19/94 (20%)
Query: 240 WMTLRSYGLKGLQAYLRKHISLAKKFADLVEKDDRFELVCPPSM---------------- 283
W+ L+ GL+ L ++ + A++ A+ + V P +
Sbjct: 268 WVLLK--GLETLAIRVQHSNASAQRIAEFLNGHPSVRWVRYPYLPSHPQYDLAKRQMSGG 325
Query: 284 -GLVCFRLKGDNDLTNQLYERLMSHKQIYIIKAS 316
+V F L D+ Q ++ ++ I +
Sbjct: 326 GTVVTFALDCPEDVAKQRAFEVLDKMRLIDISNN 359
>3cog_A Cystathionine gamma-lyase; CTH, PLP, propargylglycine, SGC,
inhibitor, structural genom stockholm, structural
genomics consortium; HET: PLP; 2.00A {Homo sapiens} PDB:
2nmp_A* 3elp_B
Length = 403
Score = 29.4 bits (67), Expect = 1.7
Identities = 18/82 (21%), Positives = 27/82 (32%), Gaps = 19/82 (23%)
Query: 240 WMTLRSYGLKGLQAYLRKHISLAKKFADLVEKDDRFELVCPPSM---------------- 283
++ R GLK L + KH A +E + E V P +
Sbjct: 254 YLCNR--GLKTLHVRMEKHFKNGMAVAQFLESNPWVEKVIYPGLPSHPQHELVKRQCTGC 311
Query: 284 -GLVCFRLKGDNDLTNQLYERL 304
G+V F +KG + L
Sbjct: 312 TGMVTFYIKGTLQHAEIFLKNL 333
>2x5d_A Probable aminotransferase; HET: LLP PLP; 2.25A {Pseudomonas
aeruginosa}
Length = 412
Score = 29.5 bits (67), Expect = 1.9
Identities = 9/31 (29%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Query: 94 TGTCA-FDNLEELGPICQEYNIWLHVDAAYA 123
T C D E + + ++Y++ + D AYA
Sbjct: 185 TAQCVELDFFERVVALAKQYDVMVVHDLAYA 215
>2o1b_A Aminotransferase, class I; aminotrasferase; HET: PLP; 1.95A
{Staphylococcus aureus}
Length = 404
Score = 29.5 bits (67), Expect = 1.9
Identities = 7/31 (22%), Positives = 13/31 (41%), Gaps = 1/31 (3%)
Query: 94 TGTCA-FDNLEELGPICQEYNIWLHVDAAYA 123
TG+ A + +E + + + D AY
Sbjct: 194 TGSTATKEVFDEAIAKFKGTDTKIVHDFAYG 224
>3qhx_A Cystathionine gamma-synthase METB (CGS); structural genomics,
seattle structural genomics center for infectious
disease, ssgcid, CGS_LIKE; HET: LLP EPE; 1.65A
{Mycobacterium ulcerans} PDB: 3qi6_A*
Length = 392
Score = 29.4 bits (67), Expect = 2.0
Identities = 16/82 (19%), Positives = 30/82 (36%), Gaps = 19/82 (23%)
Query: 240 WMTLRSYGLKGLQAYLRKHISLAKKFADLVEKDDRFELVCPPSM---------------- 283
++T+R GLK L +++H A A+ + + V P +
Sbjct: 253 YLTMR--GLKTLVLRMQRHSENAAAVAEFLAEHPAISTVLYPGLPSHPGHAVAARQMRGF 310
Query: 284 -GLVCFRLKGDNDLTNQLYERL 304
G+V R++ QL +
Sbjct: 311 GGMVSVRMRAGRTAAEQLCAKT 332
>1e5e_A MGL, methionine gamma-lyase; methionine biosynthesis, PLP-dependent
enzymes, C-S gamma lyase; HET: PPJ; 2.18A {Trichomonas
vaginalis} SCOP: c.67.1.3 PDB: 1e5f_A*
Length = 404
Score = 29.4 bits (67), Expect = 2.1
Identities = 16/82 (19%), Positives = 27/82 (32%), Gaps = 19/82 (23%)
Query: 240 WMTLRSYGLKGLQAYLRKHISLAKKFADLVEKDDRFELVCPPSM---------------- 283
W+ R GL L ++ A K A+ ++ E V P
Sbjct: 251 WLITR--GLSTLNIRMKAESENAMKVAEYLKSHPAVEKVYYPGFEDHEGHDIAKKQMRMY 308
Query: 284 -GLVCFRLKGDNDLTNQLYERL 304
++ F LK + +L + L
Sbjct: 309 GSMITFILKSGFEGAKKLLDNL 330
>2z9v_A Aspartate aminotransferase; pyridoxamine, pyruvate; HET: PXM; 1.70A
{Mesorhizobium loti} PDB: 2z9u_A* 2z9w_A* 2z9x_A*
Length = 392
Score = 28.8 bits (65), Expect = 2.8
Identities = 9/81 (11%), Positives = 18/81 (22%), Gaps = 22/81 (27%)
Query: 71 LTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEELGPICQEYNI---------------- 114
AV + L + T + + ++ +G + +
Sbjct: 122 PQAVADMLKAHPEITVVSVCHHDTPSGTINPIDAIGALVSAHGAYLIVDAVSSFGGMKTH 181
Query: 115 ---WLHVDAAYAGS--ALLLP 130
D G L P
Sbjct: 182 PEDC-KADIYVTGPNKCLGAP 201
>1gc0_A Methionine gamma-lyase; pyridoxal-5'-phosphate; HET: LLP; 1.70A
{Pseudomonas putida} SCOP: c.67.1.3 PDB: 1gc2_A* 1pg8_A*
1ukj_A* 2o7c_A*
Length = 398
Score = 28.7 bits (65), Expect = 2.9
Identities = 16/82 (19%), Positives = 32/82 (39%), Gaps = 19/82 (23%)
Query: 240 WMTLRSYGLKGLQAYLRKHISLAKKFADLVEKDDRFELVCPPSM---------------- 283
+ +R G+K L + +H + A+ A+ + + + EL+ P +
Sbjct: 253 ALLMR--GIKTLNLRMDRHCANAQVLAEFLARQPQVELIHYPGLASFPQYTLARQQMSQP 310
Query: 284 -GLVCFRLKGDNDLTNQLYERL 304
G++ F LKG + L
Sbjct: 311 GGMIAFELKGGIGAGRRFMNAL 332
>2yrr_A Aminotransferase, class V; structural genomics, NPPSFA, national
PROJ protein structural and functional analyses; HET:
PLP; 1.86A {Thermus thermophilus} PDB: 2yri_A*
Length = 353
Score = 28.7 bits (65), Expect = 2.9
Identities = 17/98 (17%), Positives = 28/98 (28%), Gaps = 27/98 (27%)
Query: 54 VRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEELGPICQEYN 113
L + +A+ A+K + + G T T + E +G + +E
Sbjct: 100 PEVLDFPPGEPVDPEAVARALKRRRYRMVA-----LVHGETSTGVLNPAEAIGALAKEAG 154
Query: 114 I-------------------WLHVDAAYAGS--ALLLP 130
VD A+ GS L P
Sbjct: 155 ALFFLDAVTTLGMLPFSMRAM-GVDYAFTGSQKCLSAP 191
>3isl_A Purine catabolism protein PUCG; pyridoxalphosphate, PLP dependent
enzymes, purine metabolism transaminases,
aminotransferases; HET: PLP; 2.06A {Bacillus subtilis}
Length = 416
Score = 28.8 bits (65), Expect = 3.0
Identities = 18/98 (18%), Positives = 32/98 (32%), Gaps = 27/98 (27%)
Query: 54 VRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEELGPICQEYN 113
V L + V + ++ +K+ K + G T T L+ +G C+ +
Sbjct: 112 VHMLECEWGTVFDPEDIIREIKKVKPKIVA-----MVHGETSTGRIHPLKAIGEACRTED 166
Query: 114 I-------------------WLHVDAAYAGS--ALLLP 130
W +DAA G+ L +P
Sbjct: 167 ALFIVDAVATIGGCEVKVDEW-KIDAAIGGTQKCLSVP 203
>3if2_A Aminotransferase; YP_265399.1, structura genomics, joint center for
structural genomics, JCSG, prote structure initiative,
PSI-2; HET: PLP; 2.50A {Psychrobacter arcticus 273-4}
Length = 444
Score = 28.9 bits (65), Expect = 3.1
Identities = 13/75 (17%), Positives = 23/75 (30%), Gaps = 5/75 (6%)
Query: 54 VRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLVATLGT----TGTC-AFDNLEELGPI 108
+ ++ D + E+L TG + + L I
Sbjct: 175 IDEVTHDGEEGFFKYRVDFEALENLPALKEGRIGAICCSRPTNPTGNVLTDEEMAHLAEI 234
Query: 109 CQEYNIWLHVDAAYA 123
+ Y+I L +D AY
Sbjct: 235 AKRYDIPLIIDNAYG 249
>3asa_A LL-diaminopimelate aminotransferase; PLP dependent
aminotransferase; 2.05A {Chlamydia trachomatis} PDB:
3asb_A*
Length = 400
Score = 28.7 bits (65), Expect = 3.6
Identities = 11/31 (35%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Query: 94 TGTCA-FDNLEELGPICQEYNIWLHVDAAYA 123
TGT D L + E+ I + DAAY+
Sbjct: 176 TGTVLNKDQLRAIVHYAIEHEILILFDAAYS 206
>3qgu_A LL-diaminopimelate aminotransferase; L-lysine, pyridoxal-5'
phosphate, chamydomonas reinhardtii; HET: GOL; 1.55A
{Chlamydomonas reinhardtii}
Length = 449
Score = 28.4 bits (64), Expect = 3.8
Identities = 12/31 (38%), Positives = 14/31 (45%), Gaps = 1/31 (3%)
Query: 94 TGTCA-FDNLEELGPICQEYNIWLHVDAAYA 123
TG A L EL ++ L DAAYA
Sbjct: 222 TGAAATRAQLTELVNFARKNGSILVYDAAYA 252
>1n08_A Putative riboflavin kinase; phophoryl transferases, flavin
cofactors, metal binding; HET: ADP; 1.60A
{Schizosaccharomyces pombe} SCOP: b.43.5.1 PDB: 1n05_A*
1n07_A* 1n06_A*
Length = 163
Score = 27.5 bits (62), Expect = 4.0
Identities = 9/38 (23%), Positives = 17/38 (44%), Gaps = 7/38 (18%)
Query: 99 FDNLEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLK 136
+ L++L I +H D A +++ P Y+ K
Sbjct: 126 YAGLDKL--IED-----IHTDIRVALNSMDRPSYSSYK 156
>3ei9_A LL-diaminopimelate aminotransferase; lysine biosynthesis, pyridoxal
5' phosphat external aldimine, chloroplast, pyridox
phosphate; HET: PL6; 1.55A {Arabidopsis thaliana} PDB:
3ei8_A* 3eib_A* 3ei6_A* 2z1z_A* 3ei5_A* 2z20_A* 3ei7_A
3eia_A*
Length = 432
Score = 28.4 bits (64), Expect = 4.1
Identities = 9/31 (29%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Query: 94 TGTCA-FDNLEELGPICQEYNIWLHVDAAYA 123
TG A + L +L ++ + D+AYA
Sbjct: 211 TGAAATREQLTQLVEFAKKNGSIIVYDSAYA 241
>1nb0_A Hypothetical protein FLJ11149; beta barrel, transferase; HET: ADP;
1.70A {Homo sapiens} SCOP: b.43.5.1 PDB: 1nb9_A* 1p4m_A*
1q9s_A*
Length = 147
Score = 27.2 bits (61), Expect = 5.5
Identities = 18/53 (33%), Positives = 22/53 (41%), Gaps = 13/53 (24%)
Query: 99 FDNLEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHK 151
FD+LE L I + D A L LPEY +K D+F F K
Sbjct: 108 FDSLESL--ISA-----IQGDIEEAKKRLELPEYLKIKE-----DNF-FQVSK 147
>1jg8_A L-ALLO-threonine aldolase; glycine biosynthesis, pyridoxal-5'-
phosphate, calcium binding site, structural genomics,
PSI; HET: LLP; 1.80A {Thermotoga maritima} SCOP:
c.67.1.1 PDB: 1lw4_A* 1lw5_A* 1m6s_A* 2fm1_A*
Length = 347
Score = 28.0 bits (63), Expect = 5.6
Identities = 25/112 (22%), Positives = 46/112 (41%), Gaps = 20/112 (17%)
Query: 47 AIIGDVPVRQLRSDDNGVLRGDALLTAVKED----LAKGLIPCCLVATLGTTG--TCAFD 100
A++ V + + G + D + A++ LI + T +G +
Sbjct: 97 AVLSGVMPHPVPGKN-GAMDPDDVRKAIRPRNIHFPRTSLI--AIENTHNRSGGRVVPLE 153
Query: 101 NLEELGPICQEYNIWLHVDAAYAGSALL-----LPEYAHLKRGLEYVDSFAF 147
N++E+ I +E+ I +H+D A +A + + EYA Y DS F
Sbjct: 154 NIKEICTIAKEHGINVHIDGARIFNASIASGVPVKEYA------GYADSVMF 199
>3jtx_A Aminotransferase; NP_283882.1, structural genomics, joint CE
structural genomics, JCSG, protein structure initiative;
HET: LLP MES; 1.91A {Neisseria meningitidis Z2491}
Length = 396
Score = 27.9 bits (63), Expect = 5.8
Identities = 6/31 (19%), Positives = 14/31 (45%), Gaps = 1/31 (3%)
Query: 94 TGTCA-FDNLEELGPICQEYNIWLHVDAAYA 123
+G+ D +E+ + +Y + D Y+
Sbjct: 181 SGSVLDLDGWKEVFDLQDKYGFIIASDECYS 211
>3nnk_A Ureidoglycine-glyoxylate aminotransferase; PLP-dependent; HET: LLP;
2.58A {Klebsiella pneumoniae}
Length = 411
Score = 27.6 bits (62), Expect = 6.3
Identities = 24/98 (24%), Positives = 31/98 (31%), Gaps = 27/98 (27%)
Query: 54 VRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEELGPICQEYN 113
V + V D + AVK + L + G T T L ELG IC+ Y+
Sbjct: 114 VHTIEVPWGEVFTPDQVEDAVKRIRPRLL-----LTVQGDTSTTMLQPLAELGEICRRYD 168
Query: 114 I-------------------WLHVDAAYAGS--ALLLP 130
W +DA AG L P
Sbjct: 169 ALFYTDATASLGGNPLETDVW-GLDAVSAGMQKCLGGP 205
>1bs0_A Protein (8-amino-7-oxonanoate synthase); PLP-dependent acyl-COA
synthase, biotin biosynthesis, 8-AMIN oxonanoate
synthase; 1.65A {Escherichia coli} SCOP: c.67.1.4 PDB:
2g6w_A* 1dje_A* 1dj9_A*
Length = 384
Score = 27.9 bits (63), Expect = 6.4
Identities = 11/29 (37%), Positives = 16/29 (55%), Gaps = 2/29 (6%)
Query: 95 GTCAFDNLEELGPICQEYNIWLHVDAAYA 123
G A L E+ + Q++N WL VD A+
Sbjct: 182 GDSA--PLAEIQQVTQQHNGWLMVDDAHG 208
>2cod_A Centaurin-delta 1; ARF GAP and RHO GAP with ankyrin repeat and PH
domains (ARAP) 2, PH domain, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1
Length = 115
Score = 26.6 bits (59), Expect = 6.7
Identities = 11/66 (16%), Positives = 23/66 (34%), Gaps = 14/66 (21%)
Query: 219 GGGVIQHWQTPLSRRFRALKLWMTLRSYGL----KGLQAYLRKHISLAKKFADLVEKDDR 274
+ +Q +R W+ + + Y + I L+ V+ D++
Sbjct: 18 SPQGKRMFQ----KR------WVKFDGLSISYYNNEKEMYSKGIIPLSAISTVRVQGDNK 67
Query: 275 FELVCP 280
FE+V
Sbjct: 68 FEVVTT 73
>2dr1_A PH1308 protein, 386AA long hypothetical serine aminotransferase;
PLP, structural genomics, NPPSFA; HET: PLP; 1.90A
{Pyrococcus horikoshii}
Length = 386
Score = 27.6 bits (62), Expect = 6.7
Identities = 14/81 (17%), Positives = 26/81 (32%), Gaps = 22/81 (27%)
Query: 71 LTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEELGPICQEYNI---------------- 114
+ + L K + T T T + L EL + +E++
Sbjct: 134 PEDLDDALRKNPDVEAVTITYNETSTGVLNPLPELAKVAKEHDKLVFVDAVSAMGGADIK 193
Query: 115 ---WLHVDAAYAGS--ALLLP 130
W +D ++ S A +P
Sbjct: 194 FDKW-GLDVVFSSSQKAFGVP 213
>3kgw_A Alanine-glyoxylate aminotransferase; AAH25799.1, putative
aminotransferase, structural genomics, center for
structural genomics, JCSG; HET: PLP; 1.65A {Mus
musculus} PDB: 3kgx_A 3imz_A* 3r9a_A* 1h0c_A* 1j04_A*
Length = 393
Score = 27.6 bits (62), Expect = 7.0
Identities = 14/98 (14%), Positives = 23/98 (23%), Gaps = 27/98 (27%)
Query: 54 VRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEELGPICQEYN 113
V Q+ + + + L G + T L+ G +C Y
Sbjct: 124 VHQMIKKPGEHYTLQEVEEGLAQHKPVLLF-----LVHGESSTGVVQPLDGFGELCHRYQ 178
Query: 114 I-------------------WLHVDAAYAGS--ALLLP 130
+D Y+ S L P
Sbjct: 179 CLLLVDSVASLGGVPIYMDQQ-GIDIMYSSSQKVLNAP 215
>3a9z_A Selenocysteine lyase; PLP, cytoplasm, pyridoxal phosphate,
transferase; HET: PLP SLP; 1.55A {Rattus norvegicus}
PDB: 3a9x_A* 3a9y_A* 3gzd_A* 3gzc_A* 2hdy_A*
Length = 432
Score = 27.6 bits (62), Expect = 7.3
Identities = 7/32 (21%), Positives = 12/32 (37%), Gaps = 10/32 (31%)
Query: 102 LEELGPICQEYN----------IWLHVDAAYA 123
+ E+ + N + +H DAA A
Sbjct: 194 ISEISRRIKALNQIRAASGLPRVLVHTDAAQA 225
>2ekg_A Proline dehydrogenase/delta-1-pyrroline-5-carboxy dehydrogenase;
flavoenzyme, prodh, beta-alpha-barrel inhibitor,
inactivation, flavocyanine; HET: LYX FAD; 1.90A {Thermus
thermophilus} PDB: 2g37_A*
Length = 327
Score = 27.7 bits (62), Expect = 7.3
Identities = 4/23 (17%), Positives = 10/23 (43%)
Query: 98 AFDNLEELGPICQEYNIWLHVDA 120
A L E+ + +++ +D
Sbjct: 132 ALALLREVLREAEPRGVFVRLDM 154
>1m32_A 2-aminoethylphosphonate-pyruvate aminotransferase; PLP-dependent
aminotransferase fold; HET: PLP; 2.20A {Salmonella
typhimurium} SCOP: c.67.1.3
Length = 366
Score = 27.5 bits (62), Expect = 7.7
Identities = 9/28 (32%), Positives = 13/28 (46%), Gaps = 2/28 (7%)
Query: 93 TTGTCAFDNLEELGPICQEYNIWLHVDA 120
TTG ++E+G + Y VDA
Sbjct: 143 TTGMLN--PIDEVGALAHRYGKTYIVDA 168
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 26.9 bits (59), Expect = 7.9
Identities = 7/21 (33%), Positives = 11/21 (52%), Gaps = 1/21 (4%)
Query: 266 ADLVEKDDRFELVCPPSMGLV 286
+VE+ ++VC GLV
Sbjct: 32 PKIVERFSEGDVVC-ALCGLV 51
>3g0t_A Putative aminotransferase; NP_905498.1, putative aspartate
aminotransferase, structural genomics, joint center for
structural genomics; HET: MSE LLP PE4; 1.75A
{Porphyromonas gingivalis}
Length = 437
Score = 27.3 bits (61), Expect = 8.5
Identities = 15/85 (17%), Positives = 25/85 (29%), Gaps = 18/85 (21%)
Query: 48 IIGDVPVR-QLRSDDNGVLRGDALLTAVKEDLAKGLI------PCCLVATLGTTGTC-AF 99
I+G L LR +I P T C
Sbjct: 152 ILGQKFESFDLFEYRGEKLREKLESYLQTGQ-FCSIIYSNPNNP---------TWQCMTD 201
Query: 100 DNLEELGPICQEYNIWLHVDAAYAG 124
+ L +G + ++++ + D AY G
Sbjct: 202 EELRIIGELATKHDVIVIEDLAYFG 226
>3op7_A Aminotransferase class I and II; PLP-dependent transferase,
structural genomics, joint center structural genomics,
JCSG; HET: LLP UNL; 1.70A {Streptococcus suis 89} PDB:
3p6k_A*
Length = 375
Score = 27.1 bits (61), Expect = 9.2
Identities = 8/25 (32%), Positives = 10/25 (40%)
Query: 100 DNLEELGPICQEYNIWLHVDAAYAG 124
LEEL I E ++ D Y
Sbjct: 174 TYLEELVEIASEVGAYILSDEVYRS 198
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.134 0.409
Gapped
Lambda K H
0.267 0.0679 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,576,279
Number of extensions: 330007
Number of successful extensions: 754
Number of sequences better than 10.0: 1
Number of HSP's gapped: 723
Number of HSP's successfully gapped: 90
Length of query: 367
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 272
Effective length of database: 4,049,298
Effective search space: 1101409056
Effective search space used: 1101409056
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.2 bits)