RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy3048
(367 letters)
>d1js3a_ c.67.1.6 (A:) DOPA decarboxylase {Pig (Sus scrofa) [TaxId:
9823]}
Length = 476
Score = 255 bits (651), Expect = 1e-81
Identities = 156/351 (44%), Positives = 214/351 (60%), Gaps = 29/351 (8%)
Query: 1 MVSILAAKRKKILDLTSAGPTVSENDIKSRLVAYASDQSNSSVEKSAIIGDVPVRQLRSD 60
+V++LAA+ K + L +A P +++ + +LVAYASDQ++SSVE++ +IG V ++ + SD
Sbjct: 153 LVALLAARTKVVRRLQAASPGLTQGAVLEKLVAYASDQAHSSVERAGLIGGVKLKAIPSD 212
Query: 61 DNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEELGPICQEYNIWLHVDA 120
+R AL A++ D A GLIP +VATLGTT C+FDNL E+GPIC E +IWLHVDA
Sbjct: 213 GKFAMRASALQEALERDKAAGLIPFFVVATLGTTSCCSFDNLLEVGPICHEEDIWLHVDA 272
Query: 121 AYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHDCSAMWVKNANHLTNTFFTDRVY 180
AYAGSA + PE+ HL G+E+ DSF FN HKWLL N DCSAMWVK LT F D VY
Sbjct: 273 AYAGSAFICPEFRHLLNGVEFADSFNFNPHKWLLVNFDCSAMWVKRRTDLTGAFKLDPVY 332
Query: 181 LKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLW 240
LKH+ ++ HWQ PL RRFR+LK+W
Sbjct: 333 LKHSHQ-------GSGLITDYR----------------------HWQLPLGRRFRSLKMW 363
Query: 241 MTLRSYGLKGLQAYLRKHISLAKKFADLVEKDDRFELVCPPSMGLVCFRLKGDNDLTNQL 300
R YG+KGLQAY+RKH+ L+ +F V +D RFE+ ++GLVCFRLKG + L L
Sbjct: 364 FVFRMYGVKGLQAYIRKHVQLSHEFEAFVLQDPRFEVCAEVTLGLVCFRLKGSDGLNEAL 423
Query: 301 YERLMSHKQIYIIKASFQGRPFLRFVVTSPETNQCDVAFAWNEISHQSSEM 351
ER+ S ++I+++ +G+ LRF + S + V AW I ++E+
Sbjct: 424 LERINSARKIHLVPCRLRGQFVLRFAICSRKVESGHVRLAWEHIRGLAAEL 474
Score = 26.7 bits (58), Expect = 4.6
Identities = 18/28 (64%), Positives = 20/28 (71%)
Query: 197 VMNWLGKALGLPEEFLNCSKGPGGGVIQ 224
+M+WLGK L LPE FL G GGGVIQ
Sbjct: 118 MMDWLGKMLQLPEAFLAGEAGEGGGVIQ 145
>d1pmma_ c.67.1.6 (A:) Glutamate decarboxylase beta, GadB
{Escherichia coli [TaxId: 562]}
Length = 450
Score = 106 bits (264), Expect = 5e-26
Identities = 54/350 (15%), Positives = 97/350 (27%), Gaps = 68/350 (19%)
Query: 1 MVSILAAKRKKILDLTSAGPTVSENDIKSRLVAYASDQSNSSVEKSAIIGDVPVRQLRSD 60
M+ +A K + + +AG K A DV +R++
Sbjct: 129 MLGGMAMKWRWRKRMEAAGKPT-------DKPNLVCGPVQICWHKFARYWDVELREIPMR 181
Query: 61 D-NGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLE------ELGPICQEYN 113
+ ++ A E+ +V T G T T ++ + + +
Sbjct: 182 PGQLFMDPKRMIEACDEN------TIGVVPTFGVTYTGNYEFPQPLHDALDKFQADTGID 235
Query: 114 IWLHVDAAYAGSAL-LLPEYAHLKRGLEYVDSFAFNAHKWLLTNHDCSAMWVKNANHLTN 172
I +H+DAA G + L V S + + HK+ L C + ++ L
Sbjct: 236 IDMHIDAASGGFLAPFVAPDIVWDFRLPRVKSISASGHKFGLAPLGCGWVIWRDEEALPQ 295
Query: 173 TFFTDRVYLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGGVIQHWQTPLSR 232
+ YL GG +
Sbjct: 296 ELVFNVDYL-------------------------------------GGQIGTFAINFSRP 318
Query: 233 RFRALKLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEKDDRFELVCP----PSMGLVCF 288
+ + + G +G +A AD + K +E +C + VCF
Sbjct: 319 AGQVIAQYYEFLRLGREGYTKVQNASYQVAAYLADEIAKLGPYEFICTGRPDEGIPAVCF 378
Query: 289 RLKGDNDL---TNQLYERLMSHKQI---YIIKASFQGRPFLRFVVTSPET 332
+LK D L ERL + + +R +
Sbjct: 379 KLKDGEDPGYTLYDLSERLRLRGWQVPAFTLGGEATDIVVMRIMCRRGFE 428
Score = 31.0 bits (69), Expect = 0.22
Identities = 9/73 (12%), Positives = 15/73 (20%), Gaps = 10/73 (13%)
Query: 197 VMNWLGKALGLPEEFLNCSKGPGGGVIQH------WQTPLSRRFRALKLWMTLRSYGLKG 250
+N + P G G ++ ++R K K
Sbjct: 98 CVNMVADLWHAPAPKN----GQAVGTNTIGSSEACMLGGMAMKWRWRKRMEAAGKPTDKP 153
Query: 251 LQAYLRKHISLAK 263
I K
Sbjct: 154 NLVCGPVQICWHK 166
>d2z67a1 c.67.1.9 (A:1-434) Selenocysteinyl-tRNA synthase (SepSecS)
{Methanococcus maripaludis [TaxId: 39152]}
Length = 434
Score = 85.7 bits (211), Expect = 5e-19
Identities = 47/329 (14%), Positives = 102/329 (31%), Gaps = 67/329 (20%)
Query: 30 RLVAYASDQSNSSVEKSAIIGDVPVRQLR---SDDNGVLRGDALLTAVKEDLAKGLIPCC 86
V S+ S K+ + +R + D + + + A+K+++ G PC
Sbjct: 156 SNVVIYPYASHKSPIKAVSFVGMNMRLVETVLDGDRVYVPVEDIENAIKKEIELGNRPC- 214
Query: 87 LVATLGTTGTCAFDNLEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFA 146
+++TL D++ E+ IC+ Y+I ++ AYA E K VD+
Sbjct: 215 VLSTLTFFPPRNSDDIVEIAKICENYDIPHIINGAYAIQNNYYLEKLK-KAFKYRVDAVV 273
Query: 147 FNAHKWLLTNHDCSAMWVKNANHLTNTFFTDRVYLKHTDAPMNTQSPDYTVMNWLGKALG 206
++ K LLT ++ +A +
Sbjct: 274 SSSDKNLLTPIGGGLVYSTDAEFIKE---------------------------------- 299
Query: 207 LPEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKKFA 266
I + + ++L S G K ++ + K
Sbjct: 300 ----------------ISLSYPGRASATPVVNTLVSLLSMGSKNYLELVKNQKNSKKLLD 343
Query: 267 DLVEK---DDRFELVCPPSMGLVCFRLKGDN-DLTNQLYERLMSHKQIYIIKASFQGRPF 322
+L+ + + S C + D ++ +LY ++ + F G +
Sbjct: 344 ELLNDLSKKTGGKFLDVESPIASCISVNSDPVEIAAKLYNLRVTGPRGIKKTDHF-GNCY 402
Query: 323 LRF-------VVTSPETNQCDVAFAWNEI 344
L + + D+ + +++
Sbjct: 403 LGTYTHDYIVMNAAIGVRTEDIVNSVSKL 431
>d3bc8a1 c.67.1.9 (A:23-467) Selenocysteinyl-tRNA synthase (SepSecS)
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 445
Score = 85.4 bits (210), Expect = 6e-19
Identities = 26/165 (15%), Positives = 48/165 (29%), Gaps = 5/165 (3%)
Query: 34 YASDQSNSSVEKSAI---IGDVPVRQLRSDDNGVLRGDALLTAVKEDLAKGLIPCCLVAT 90
S KS + V + + D A+ ++E CL +T
Sbjct: 144 IWPRIDQKSCFKSMVTAGFEPVVIENVLEGDELRTDLKAVEAKIQEL--GPEHILCLHST 201
Query: 91 LGTTGTCAFDNLEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAH 150
D LEEL IC Y+I V+ AY + + +D+F +
Sbjct: 202 TACFAPRVPDRLEELAVICANYDIPHVVNNAYGLQSSKCMHLIQQGARVGRIDAFVQSLD 261
Query: 151 KWLLTNHDCSAMWVKNANHLTNTFFTDRVYLKHTDAPMNTQSPDY 195
K + + + N + + + + +
Sbjct: 262 KNFMVPVGGAIIAGFNEPFIQDISKMYPGRASASPSLDVLITLLS 306
>d2v1pa1 c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptophanase)
{Escherichia coli [TaxId: 562]}
Length = 467
Score = 38.4 bits (88), Expect = 0.001
Identities = 21/128 (16%), Positives = 38/128 (29%), Gaps = 21/128 (16%)
Query: 68 DALLTAVKEDLAKGLIPCCLVATLGTTG--TCAFDNLEELGPICQEYNIWLHVDAA---- 121
+ L ++E + T + G + NL+ + I ++Y+I + +D+A
Sbjct: 170 EGLERGIEEVGPNNVPYIVATITSNSAGGQPVSLANLKAMYSIAKKYDIPVVMDSARFAE 229
Query: 122 -YAGSALLLPEYAH------LKRGLEYVDSFAFNAHK--------WLLTNHDCSAMWVKN 166
EY + +Y D A +A K L D
Sbjct: 230 NAYFIKQREAEYKDWTIEQITRETYKYADMLAMSAKKDAMVPMGGLLCMKDDSFFDVYTE 289
Query: 167 ANHLTNTF 174
L
Sbjct: 290 CRTLCVVQ 297
>d1c7ga_ c.67.1.2 (A:) Tyrosine phenol-lyase {Erwinia herbicola
[TaxId: 549]}
Length = 456
Score = 37.8 bits (87), Expect = 0.001
Identities = 20/156 (12%), Positives = 38/156 (24%), Gaps = 23/156 (14%)
Query: 68 DALLTAVKEDLAKGLIPCCLVATLGTTGTCAF---DNLEELGPICQEYNIWLHVDAA-YA 123
+ L T +KE I +A N+ + + Y I + DA
Sbjct: 161 NKLATLIKEK-GAENIAYICLAVTVNLAGGQPVSMANMRAVHEMASTYGIKIFYDATRCV 219
Query: 124 GSALLLPEYAHLKRGL----------EYVDSFAFNAHK--------WLLTNHDCSAMWVK 165
+A + E + Y D + K +L N + K
Sbjct: 220 ENAYFIKEQEAGYENVSIKDIVHEMFSYADGCTMSGKKDCLVNIGGFLCMNDEEMFSAAK 279
Query: 166 NANHLTNTFFTDRVYLKHTDAPMNTQSPDYTVMNWL 201
+ + M + ++
Sbjct: 280 ELVVVYEGMPSYGGLAGRDMEAMAIGLREAMQYEYI 315
>d1ax4a_ c.67.1.2 (A:) Tryptophan indol-lyase (tryptophanase)
{Proteus vulgaris [TaxId: 585]}
Length = 465
Score = 36.1 bits (82), Expect = 0.005
Identities = 31/259 (11%), Positives = 64/259 (24%), Gaps = 39/259 (15%)
Query: 60 DDNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAF---DNLEELGPICQEYNIWL 116
D G L + + I + + NL+E+ I +++ I++
Sbjct: 161 DWKGDFDIKKLKENIAQH-GADNIVAIVSTVTCNSAGGQPVSMSNLKEVYEIAKQHGIFV 219
Query: 117 HVDAAY-AGSALLLPEYAHLKRGLE----------YVDSFAFNAHK-------------- 151
+D+A +A + + Y D+ +A K
Sbjct: 220 VMDSARFCENAYFIKARDPKYKNATIKEVIFDMYKYADALTMSAKKDPLLNIGGLVAIRD 279
Query: 152 ----WLLTNHDCSAMWVKNANHLTNTFFTDRVYLKHTDAPMNTQSPDYTVMNWLGKALGL 207
+ L C M + + + Y + L
Sbjct: 280 NEEIFTLARQRCVPMEGFVTYGGLAGRDMAAMVQGLEEG-TEEEYLHYRIGQVKYLGDRL 338
Query: 208 PEEFLNCSKGPGGGVIQHWQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKKFAD 267
E + GG + L + + L YL + + +
Sbjct: 339 REAGIPIQYPTGGHAVFVDCKKLVPQIPGDQFPAQAVINAL-----YLESGVRAVEIGSF 393
Query: 268 LVEKDDRFELVCPPSMGLV 286
L+ +D M +
Sbjct: 394 LLGRDPATGEQKHADMEFM 412
>d1gdea_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT
{Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Length = 388
Score = 30.6 bits (68), Expect = 0.28
Identities = 38/247 (15%), Positives = 67/247 (27%), Gaps = 33/247 (13%)
Query: 57 LRSDDNGVLRGDALLTAVKEDLAKGLIPCCLVATLGTTGTCAFDNLEELGPICQEYNIWL 116
+D L D L V + + LI G +LEE+ E+++ +
Sbjct: 139 TYEEDEFRLNVDELKKYVTDK-TRALIINSPCNPTGAV--LTKKDLEEIADFVVEHDLIV 195
Query: 117 HVDAAYAGSALLLPEYAHLKRGLE------YVDSF-----------AFNAHKWLLTNHDC 159
D Y + + V+ F F A +
Sbjct: 196 ISDEVYEHFIYDDARHYSIASLDGMFERTITVNGFSKTFAMTGWRLGFVAAPSWIIERMV 255
Query: 160 SAMWVKNANHLTNTFFTDRVYLKHTDAPMNTQSPDYTVMNWLGKALGLPEEFLNCSKGPG 219
+T + LK + + E + P
Sbjct: 256 KFQMYNATCPVTFIQYAAAKALKDERSWKAVEEMRKEYDRRRKLVWKRLNEMGLPTVKPK 315
Query: 220 GG---VIQHWQTPLSRRFRALKLW-------MTLRSYGLKGLQAYLRKHISLAKKFADLV 269
G + T L+ + + + + ++G G + Y+R IS A + L
Sbjct: 316 GAFYIFPRIRDTGLTSKKFSELMLKEARVAVVPGSAFGKAG-EGYVR--ISYATAYEKLE 372
Query: 270 EKDDRFE 276
E DR E
Sbjct: 373 EAMDRME 379
>d1y4ia1 c.67.1.3 (A:2-398) Methionine gamma-lyase, MGL {Citrobacter
freundii [TaxId: 546]}
Length = 397
Score = 29.3 bits (65), Expect = 0.68
Identities = 17/82 (20%), Positives = 30/82 (36%), Gaps = 19/82 (23%)
Query: 240 WMTLRSYGLKGLQAYLRKHISLAKKFADLVEKDDRFELVCPPSM---------------- 283
W+TLR G+K L + +H A K A +E V P +
Sbjct: 251 WLTLR--GVKTLGIRMERHCENALKIARFLEGHPSITRVYYPGLSSHPQYELGQRQMSLP 308
Query: 284 -GLVCFRLKGDNDLTNQLYERL 304
G++ F + G + ++ +
Sbjct: 309 GGIISFEIAGGLEAGRRMINSV 330
>d2iv2x2 c.81.1.1 (X:1-564) Formate dehydrogenase H {Escherichia
coli [TaxId: 562]}
Length = 564
Score = 28.1 bits (61), Expect = 1.8
Identities = 10/112 (8%), Positives = 32/112 (28%), Gaps = 10/112 (8%)
Query: 107 PICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHDCSAMWVKN 166
P + E + +++ E ++ T +A +
Sbjct: 387 PHRAAHGEVRAAYIMGEDPLQTDAELSAVRKAFEDLELVIVQDIFM--TKTASAADVILP 444
Query: 167 ANH-------LTNTFFTDRVYLKHTDAPMNTQSPDYTVMNWLGKALGLPEEF 211
+ T + + K + + + D+ +++ + +G P +
Sbjct: 445 STSWGEHEGVFTAADRGFQRFFKAVEPKWDLK-TDWQIISEIATRMGYPMHY 495
>d1ccwb_ c.1.19.2 (B:) Glutamate mutase, large subunit {Clostridium
cochlearium [TaxId: 1494]}
Length = 483
Score = 27.9 bits (62), Expect = 2.1
Identities = 16/85 (18%), Positives = 28/85 (32%), Gaps = 8/85 (9%)
Query: 226 WQTPLSRRFRALKLWMTLRSYGLKGLQAYLRKHISLAKKFADLVEK-DDRFELVCPPSMG 284
+ +R L+ W T + L+ YL+ I K FA+ + + + P G
Sbjct: 10 DEEFHKQREEVLQQWPTGKEVDLQEAVDYLK-KIPAEKNFAEKLVLAKKKGITMAQPRAG 68
Query: 285 LVCFRLKGDNDLTNQLYERLMSHKQ 309
+ D +L L
Sbjct: 69 V------ALLDEHIELLRYLQDEGG 87
>d1gc0a_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Pseudomonas
putida [TaxId: 303]}
Length = 392
Score = 27.4 bits (60), Expect = 2.9
Identities = 16/82 (19%), Positives = 32/82 (39%), Gaps = 19/82 (23%)
Query: 240 WMTLRSYGLKGLQAYLRKHISLAKKFADLVEKDDRFELVCPPSM---------------- 283
+ +R G+K L + +H + A+ A+ + + + EL+ P +
Sbjct: 247 ALLMR--GIKTLNLRMDRHCANAQVLAEFLARQPQVELIHYPGLASFPQYTLARQQMSQP 304
Query: 284 -GLVCFRLKGDNDLTNQLYERL 304
G++ F LKG + L
Sbjct: 305 GGMIAFELKGGIGAGRRFMNAL 326
>d1n62b2 d.133.1.1 (B:147-809) Carbon monoxide (CO) dehydrogenase
molybdoprotein {Oligotropha carboxidovorans, formerly
Pseudomonas carboxydovorans [TaxId: 40137]}
Length = 663
Score = 26.5 bits (57), Expect = 6.3
Identities = 18/124 (14%), Positives = 35/124 (28%), Gaps = 26/124 (20%)
Query: 119 DAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHKWLLTNHDCSAMWVKNANH-LTNTFFTD 177
A + LL + G + +W + + + + A + F
Sbjct: 5 KAMEPDAPLLREDIKDKMTGAHGARKHHNHIFRWEIGDKEGTDATFAKAEVVSKDMFTYH 64
Query: 178 RVYLKHTDAPM--------------------NTQSPDYTVMNWLGKALGLPEEFLNCSKG 217
RV+ +P+ Q+P + + GLPE ++
Sbjct: 65 RVH--P--SPLETCQCVASMDKIKGELTLWGTFQAPHV-IRTVVSLISGLPEHKIHVIAP 119
Query: 218 PGGG 221
GG
Sbjct: 120 DIGG 123
>d1g8ka2 c.81.1.1 (A:4-682) Arsenite oxidase large subunit
{Alcaligenes faecalis [TaxId: 511]}
Length = 679
Score = 26.3 bits (56), Expect = 7.2
Identities = 17/144 (11%), Positives = 39/144 (27%), Gaps = 7/144 (4%)
Query: 92 GTTGTCAFDNLEELGPICQEYNIWLHVDAAYAGSALLLPEYAHLKRGLEYVDSFAFNAHK 151
G +N + L + + + A A + + F + +
Sbjct: 453 GCNNFQTSNNAQALREAILQRSAIVKQAMQKARGATTEEMVDVIYEATQNGGLFVTSINL 512
Query: 152 WLLTNHDCSAMWVKNANHL------TNTFFTDRVYLKHTDAPMNTQSPDYTVMNWLGKAL 205
+ + + + + A+ N R+ K D P D + + AL
Sbjct: 513 YPTKLAEAAHLMLPAAHPGEMNLTSMNGERRIRLSEKFMDPPGTAM-ADCLIAARIANAL 571
Query: 206 GLPEEFLNCSKGPGGGVIQHWQTP 229
+ ++ W+T
Sbjct: 572 RDMYQKDGKAEMAAQFEGFDWKTE 595
>d1rm6a2 d.133.1.1 (A:134-769) 4-hydroxybenzoyl-CoA reductase alpha
subunit HrcA, C-terminal domain {Thauera aromatica
[TaxId: 59405]}
Length = 636
Score = 26.2 bits (56), Expect = 7.6
Identities = 9/33 (27%), Positives = 12/33 (36%), Gaps = 1/33 (3%)
Query: 189 NTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGG 221
TQ P Y V + L + + K GG
Sbjct: 79 TTQVPYY-VHLKVAACLQMDSARIRVIKPFLGG 110
>d1t3qb2 d.133.1.1 (B:166-786) Quinoline 2-oxidoreductase large
subunit QorL {Pseudomonas putida [TaxId: 303]}
Length = 621
Score = 26.1 bits (56), Expect = 8.2
Identities = 8/33 (24%), Positives = 12/33 (36%), Gaps = 1/33 (3%)
Query: 189 NTQSPDYTVMNWLGKALGLPEEFLNCSKGPGGG 221
TQ P + V + +PE + GG
Sbjct: 57 ATQMPSF-VRTMVAMFCAIPEHLIEVRVPDVGG 88
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.134 0.409
Gapped
Lambda K H
0.267 0.0442 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,352,255
Number of extensions: 62279
Number of successful extensions: 158
Number of sequences better than 10.0: 1
Number of HSP's gapped: 155
Number of HSP's successfully gapped: 19
Length of query: 367
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 280
Effective length of database: 1,213,086
Effective search space: 339664080
Effective search space used: 339664080
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (24.9 bits)