Query psy3049
Match_columns 157
No_of_seqs 118 out of 1363
Neff 10.6
Searched_HMMs 46136
Date Sat Aug 17 00:22:44 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3049.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/3049hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0617|consensus 99.8 2.2E-21 4.7E-26 125.2 -2.7 137 1-137 40-191 (264)
2 KOG0617|consensus 99.6 2E-17 4.3E-22 107.0 0.1 152 1-154 63-232 (264)
3 KOG0472|consensus 99.6 3.6E-16 7.8E-21 112.6 4.6 143 2-156 420-563 (565)
4 PLN00113 leucine-rich repeat r 99.6 4.1E-15 8.8E-20 120.9 8.6 145 2-146 148-311 (968)
5 PLN00113 leucine-rich repeat r 99.6 8.1E-15 1.7E-19 119.2 8.3 146 1-146 171-335 (968)
6 KOG0472|consensus 99.6 6.9E-16 1.5E-20 111.1 0.8 108 45-155 223-331 (565)
7 KOG4194|consensus 99.5 5.3E-16 1.1E-20 116.2 -0.2 138 2-148 253-397 (873)
8 KOG4194|consensus 99.5 1.3E-15 2.8E-20 114.2 1.3 139 1-149 300-445 (873)
9 KOG0444|consensus 99.5 5.5E-16 1.2E-20 117.4 -0.8 147 1-148 157-344 (1255)
10 KOG0532|consensus 99.5 2.1E-16 4.6E-21 117.7 -3.1 148 2-152 106-265 (722)
11 KOG0444|consensus 99.5 5E-15 1.1E-19 112.3 -0.2 142 5-146 43-200 (1255)
12 PF14580 LRR_9: Leucine-rich r 99.4 3.3E-13 7.1E-18 88.9 6.4 118 4-134 7-128 (175)
13 PF14580 LRR_9: Leucine-rich r 99.4 9.7E-13 2.1E-17 86.7 5.2 115 1-127 26-148 (175)
14 PRK15387 E3 ubiquitin-protein 99.3 4.6E-12 1E-16 99.9 7.9 114 18-140 343-466 (788)
15 KOG1259|consensus 99.3 3.4E-13 7.4E-18 94.5 0.8 122 1-134 291-414 (490)
16 KOG0618|consensus 99.3 4.7E-13 1E-17 104.8 1.1 130 2-141 367-498 (1081)
17 PRK15370 E3 ubiquitin-protein 99.3 2.8E-11 6E-16 95.6 8.4 60 73-136 325-384 (754)
18 KOG0532|consensus 99.2 7E-13 1.5E-17 99.3 -4.0 146 1-149 82-240 (722)
19 PRK15370 E3 ubiquitin-protein 99.2 2.4E-10 5.1E-15 90.5 9.4 112 2-133 186-297 (754)
20 KOG0618|consensus 99.1 9E-12 2E-16 97.8 0.3 130 2-132 295-465 (1081)
21 KOG4237|consensus 99.1 9.8E-12 2.1E-16 89.7 -2.0 124 1-133 74-202 (498)
22 PRK15387 E3 ubiquitin-protein 99.1 7.5E-10 1.6E-14 87.6 8.2 116 1-134 208-357 (788)
23 PLN03210 Resistant to P. syrin 99.0 2.2E-09 4.8E-14 89.1 9.5 85 44-130 628-715 (1153)
24 KOG4579|consensus 99.0 5.5E-11 1.2E-15 74.5 -0.2 124 18-150 28-152 (177)
25 COG4886 Leucine-rich repeat (L 99.0 6.3E-10 1.4E-14 82.6 5.0 138 2-140 148-298 (394)
26 PF13855 LRR_8: Leucine rich r 99.0 4.7E-10 1E-14 61.5 3.2 58 74-131 2-61 (61)
27 PLN03150 hypothetical protein; 99.0 1.7E-09 3.7E-14 84.6 7.4 88 52-139 420-510 (623)
28 PLN03210 Resistant to P. syrin 99.0 1.8E-09 3.9E-14 89.6 7.2 84 42-129 794-879 (1153)
29 cd00116 LRR_RI Leucine-rich re 99.0 8.5E-10 1.8E-14 79.4 4.6 87 48-134 191-293 (319)
30 cd00116 LRR_RI Leucine-rich re 99.0 7.9E-10 1.7E-14 79.6 4.3 84 50-133 137-235 (319)
31 PLN03150 hypothetical protein; 98.9 4.6E-09 9.9E-14 82.2 8.5 109 19-136 420-532 (623)
32 COG4886 Leucine-rich repeat (L 98.9 4.2E-10 9.1E-15 83.5 2.2 95 2-106 124-219 (394)
33 PF13855 LRR_8: Leucine rich r 98.9 2.5E-09 5.4E-14 58.5 4.3 58 18-84 2-60 (61)
34 KOG1259|consensus 98.9 6.9E-10 1.5E-14 78.2 1.2 124 13-148 280-404 (490)
35 KOG4579|consensus 98.8 2E-10 4.4E-15 72.0 -1.6 127 2-137 35-164 (177)
36 KOG4237|consensus 98.8 1.2E-09 2.6E-14 79.2 0.3 113 22-146 51-167 (498)
37 KOG1859|consensus 98.6 5.8E-10 1.2E-14 86.3 -4.9 121 2-134 172-294 (1096)
38 PF12799 LRR_4: Leucine Rich r 98.6 1.3E-07 2.8E-12 48.1 4.0 37 97-133 2-38 (44)
39 PF12799 LRR_4: Leucine Rich r 98.5 2E-07 4.4E-12 47.3 3.4 38 74-111 2-39 (44)
40 KOG4658|consensus 98.5 1.4E-07 2.9E-12 76.3 3.6 83 46-128 567-651 (889)
41 KOG4658|consensus 98.4 1.5E-07 3.3E-12 76.0 2.9 121 17-148 523-647 (889)
42 KOG3207|consensus 98.4 1.8E-07 3.8E-12 68.9 1.9 121 14-134 169-316 (505)
43 KOG0531|consensus 98.3 1.3E-07 2.9E-12 70.8 0.8 117 4-132 82-199 (414)
44 KOG1859|consensus 98.3 2.1E-08 4.4E-13 78.0 -4.2 105 18-134 165-269 (1096)
45 KOG1644|consensus 98.2 2.8E-06 6.1E-11 56.8 5.2 83 46-128 60-149 (233)
46 KOG0531|consensus 98.2 2.3E-07 4.9E-12 69.6 -0.0 99 1-111 102-201 (414)
47 KOG3207|consensus 98.1 5.7E-07 1.2E-11 66.3 -0.5 114 12-132 141-284 (505)
48 KOG1644|consensus 98.1 6.5E-06 1.4E-10 55.1 4.3 96 1-106 49-150 (233)
49 KOG1909|consensus 98.0 9.8E-07 2.1E-11 63.3 -1.0 64 69-132 209-283 (382)
50 KOG1909|consensus 97.8 1.4E-05 2.9E-10 57.6 1.8 88 45-132 208-311 (382)
51 PF13306 LRR_5: Leucine rich r 97.7 0.00034 7.4E-09 43.6 7.1 122 9-145 3-128 (129)
52 PRK15386 type III secretion pr 97.6 0.0004 8.6E-09 51.9 7.6 105 14-129 49-187 (426)
53 KOG3665|consensus 97.6 4.3E-05 9.2E-10 60.8 2.2 103 48-151 171-283 (699)
54 KOG2739|consensus 97.6 6.4E-05 1.4E-09 52.1 2.8 79 51-130 44-127 (260)
55 KOG2739|consensus 97.5 0.00011 2.3E-09 51.1 2.9 102 15-127 41-151 (260)
56 KOG3665|consensus 97.4 0.00024 5.2E-09 56.6 4.8 107 16-132 121-233 (699)
57 KOG2123|consensus 97.4 1.6E-05 3.4E-10 56.0 -1.7 83 51-135 20-104 (388)
58 KOG2982|consensus 97.3 0.0001 2.3E-09 52.5 1.0 87 16-109 70-159 (418)
59 KOG0473|consensus 97.0 2.1E-05 4.6E-10 54.0 -4.1 95 46-140 38-132 (326)
60 PF00560 LRR_1: Leucine Rich R 97.0 0.00055 1.2E-08 29.1 1.6 19 18-36 1-19 (22)
61 KOG2120|consensus 96.9 3.6E-05 7.8E-10 54.8 -3.8 59 71-130 311-374 (419)
62 PF00560 LRR_1: Leucine Rich R 96.9 0.00048 1E-08 29.3 1.1 19 98-116 2-20 (22)
63 COG5238 RNA1 Ran GTPase-activa 96.8 0.00087 1.9E-08 47.4 2.5 42 45-86 87-133 (388)
64 KOG2982|consensus 96.8 0.00053 1.1E-08 49.0 1.4 137 1-146 78-252 (418)
65 PF13306 LRR_5: Leucine rich r 96.7 0.0053 1.1E-07 38.2 5.2 103 5-121 22-128 (129)
66 PRK15386 type III secretion pr 96.7 0.0027 6E-08 47.5 4.2 32 73-106 156-187 (426)
67 COG5238 RNA1 Ran GTPase-activa 96.6 0.0041 8.9E-08 44.1 4.2 115 12-132 87-227 (388)
68 KOG2120|consensus 96.4 0.00064 1.4E-08 48.6 -0.7 120 3-130 219-349 (419)
69 PF13504 LRR_7: Leucine rich r 96.3 0.0028 6.2E-08 25.1 1.4 16 18-33 2-17 (17)
70 KOG2123|consensus 96.2 0.00024 5.2E-09 50.2 -3.4 98 16-125 18-123 (388)
71 KOG0473|consensus 94.8 0.00078 1.7E-08 46.5 -4.8 92 8-109 32-124 (326)
72 smart00369 LRR_TYP Leucine-ric 94.1 0.063 1.4E-06 23.4 2.2 18 97-114 3-20 (26)
73 smart00370 LRR Leucine-rich re 94.1 0.063 1.4E-06 23.4 2.2 18 97-114 3-20 (26)
74 PF13516 LRR_6: Leucine Rich r 93.1 0.035 7.5E-07 23.8 0.4 21 119-139 2-22 (24)
75 smart00364 LRR_BAC Leucine-ric 89.8 0.22 4.7E-06 22.0 1.1 17 18-34 3-19 (26)
76 smart00368 LRR_RI Leucine rich 89.8 0.41 8.8E-06 21.4 2.1 22 119-140 2-23 (28)
77 KOG4308|consensus 87.6 0.013 2.8E-07 45.1 -6.0 126 11-138 166-309 (478)
78 smart00365 LRR_SD22 Leucine-ri 87.0 0.64 1.4E-05 20.5 1.7 16 17-32 2-17 (26)
79 KOG3864|consensus 85.7 0.69 1.5E-05 31.6 2.1 77 74-150 102-183 (221)
80 KOG1947|consensus 80.0 1.8 4E-05 32.9 2.8 84 48-131 212-307 (482)
81 TIGR00864 PCC polycystin catio 77.3 2.1 4.5E-05 39.8 2.6 31 79-109 1-32 (2740)
82 KOG3864|consensus 76.9 0.83 1.8E-05 31.2 0.1 33 96-128 151-185 (221)
83 KOG3763|consensus 76.9 1.2 2.6E-05 34.9 1.0 15 120-134 271-285 (585)
84 KOG1947|consensus 71.7 2.9 6.3E-05 31.8 2.0 90 13-108 210-307 (482)
85 TIGR00864 PCC polycystin catio 63.3 6.5 0.00014 37.0 2.6 30 1-30 2-32 (2740)
86 KOG3763|consensus 62.4 5.2 0.00011 31.6 1.6 62 48-109 216-283 (585)
87 smart00367 LRR_CC Leucine-rich 54.4 16 0.00034 15.6 1.9 16 119-134 2-18 (26)
88 KOG4341|consensus 50.9 11 0.00024 29.0 1.7 13 15-27 292-304 (483)
No 1
>KOG0617|consensus
Probab=99.79 E-value=2.2e-21 Score=125.19 Aligned_cols=137 Identities=33% Similarity=0.538 Sum_probs=122.4
Q ss_pred CCCCCCCccchhhhcccCCCEEEecCCcceecCccccCCCC-------------CChhhhcCcccceEecccCCCc--cc
Q psy3049 1 MNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKN-------------LSPDLWQFTHLTALYMNDNNLT--RL 65 (157)
Q Consensus 1 l~~n~i~~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~-------------~~~~~~~~~~L~~l~l~~~~~~--~~ 65 (157)
+|+|.++-+|+.++++.+|+.|++.+|+++++|..++++++ +|..|..++.|+.+++..|++. .+
T Consensus 40 LSHNKl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~levldltynnl~e~~l 119 (264)
T KOG0617|consen 40 LSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEVLDLTYNNLNENSL 119 (264)
T ss_pred cccCceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccccCCCchhhhhhccccccccccC
Confidence 58899999999999999999999999999999998876654 4888999999999999999987 56
Q ss_pred cccccccccccEEeccCCCCCCCChhhhCccccceEEcCCCcccCcchhhcCcCCCcEEEccCCCCCChhHH
Q psy3049 66 SGDISLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLRTLPYELGKLFQIQILGLHGNPLSKDYMK 137 (157)
Q Consensus 66 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~l~~n~l~~l~~~~~~~~~L~~l~l~~n~~~~~~~~ 137 (157)
|..|..+..|+.|.+++|.+..+|..++.+++|+++.+++|.+-++|++++.+.+|+++++.+|+++-.+|+
T Consensus 120 pgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll~lpkeig~lt~lrelhiqgnrl~vlppe 191 (264)
T KOG0617|consen 120 PGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLLSLPKEIGDLTRLRELHIQGNRLTVLPPE 191 (264)
T ss_pred CcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchhhCcHHHHHHHHHHHHhcccceeeecChh
Confidence 888888889999999999999999999999999999999999999999999999999999988888755444
No 2
>KOG0617|consensus
Probab=99.64 E-value=2e-17 Score=107.00 Aligned_cols=152 Identities=34% Similarity=0.566 Sum_probs=134.5
Q ss_pred CCCCCCCccchhhhcccCCCEEEecCCcceecCccccCCCC---------------CChhhhcCcccceEecccCCCccc
Q psy3049 1 MNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKN---------------LSPDLWQFTHLTALYMNDNNLTRL 65 (157)
Q Consensus 1 l~~n~i~~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~---------------~~~~~~~~~~L~~l~l~~~~~~~~ 65 (157)
+++|+|+.+|..++.+++|+.|++..|++..+|.++++++. +|-.|..+..|..+++.+|-+..+
T Consensus 63 ~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe~l 142 (264)
T KOG0617|consen 63 LSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEIL 142 (264)
T ss_pred cccchhhhcChhhhhchhhhheecchhhhhcCccccCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcccC
Confidence 46899999999999999999999999999999998887654 466777888899999999999999
Q ss_pred cccccccccccEEeccCCCCCCCChhhhCccccceEEcCCCcccCcchhhcCcC---CCcEEEccCCCCCChhHHhhcCC
Q psy3049 66 SGDISLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLRTLPYELGKLF---QIQILGLHGNPLSKDYMKIYNEP 142 (157)
Q Consensus 66 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~l~~n~l~~l~~~~~~~~---~L~~l~l~~n~~~~~~~~~~~~~ 142 (157)
|+..+.+++|+.|.+.+|.+-.+|..++.+..|+++.+.+|+++.+|++++++. +-+.+.+..|++...+++.|.
T Consensus 143 p~dvg~lt~lqil~lrdndll~lpkeig~lt~lrelhiqgnrl~vlppel~~l~l~~~k~v~r~E~NPwv~pIaeQf~-- 220 (264)
T KOG0617|consen 143 PPDVGKLTNLQILSLRDNDLLSLPKEIGDLTRLRELHIQGNRLTVLPPELANLDLVGNKQVMRMEENPWVNPIAEQFL-- 220 (264)
T ss_pred ChhhhhhcceeEEeeccCchhhCcHHHHHHHHHHHHhcccceeeecChhhhhhhhhhhHHHHhhhhCCCCChHHHHHH--
Confidence 999999999999999999988899999999999999999999999999877654 345666788999999999997
Q ss_pred CChHHHHHHHHh
Q psy3049 143 NGTQKLLSYLLD 154 (157)
Q Consensus 143 ~~l~~l~~~~~~ 154 (157)
.+..+.++|++.
T Consensus 221 lG~shV~~yirt 232 (264)
T KOG0617|consen 221 LGISHVIDYIRT 232 (264)
T ss_pred hhHHHHHHHHhh
Confidence 578888888754
No 3
>KOG0472|consensus
Probab=99.62 E-value=3.6e-16 Score=112.56 Aligned_cols=143 Identities=32% Similarity=0.454 Sum_probs=122.2
Q ss_pred CCCCCCccchhhhcccCCCEEEecCCcceecCccccCCCCCChhhhcCcccceEecccCCCccccccccccccccEEecc
Q psy3049 2 NDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTRLSGDISLLINLRTLDIS 81 (157)
Q Consensus 2 ~~n~i~~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~ 81 (157)
+.|.+..+|..++.++++..|++++|.+.++|.+. +.+-.|+.++++.|.+..+|........++.+-.+
T Consensus 420 snn~isfv~~~l~~l~kLt~L~L~NN~Ln~LP~e~----------~~lv~Lq~LnlS~NrFr~lP~~~y~lq~lEtllas 489 (565)
T KOG0472|consen 420 SNNKISFVPLELSQLQKLTFLDLSNNLLNDLPEEM----------GSLVRLQTLNLSFNRFRMLPECLYELQTLETLLAS 489 (565)
T ss_pred hcCccccchHHHHhhhcceeeecccchhhhcchhh----------hhhhhhheecccccccccchHHHhhHHHHHHHHhc
Confidence 56677777777889999999999999999888764 45556999999999998888877777788888777
Q ss_pred CCCCCCCCh-hhhCccccceEEcCCCcccCcchhhcCcCCCcEEEccCCCCCChhHHhhcCCCChHHHHHHHHhhc
Q psy3049 82 NNKLRYLPS-EIGDLIYLRELCLNNNNLRTLPYELGKLFQIQILGLHGNPLSKDYMKIYNEPNGTQKLLSYLLDSL 156 (157)
Q Consensus 82 ~~~~~~~~~-~~~~~~~l~~l~l~~n~l~~l~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~l~~l~~~~~~~~ 156 (157)
+|+++.++. .+..+.+|..+|+.+|.+..+|+.+++|.+++++.+++|+|.-....++ |.++-+++.|.++..
T Consensus 490 ~nqi~~vd~~~l~nm~nL~tLDL~nNdlq~IPp~LgnmtnL~hLeL~gNpfr~Pr~~iL--mkgT~aiL~ylrdrI 563 (565)
T KOG0472|consen 490 NNQIGSVDPSGLKNMRNLTTLDLQNNDLQQIPPILGNMTNLRHLELDGNPFRQPRHQIL--MKGTAAILSYLRDRI 563 (565)
T ss_pred cccccccChHHhhhhhhcceeccCCCchhhCChhhccccceeEEEecCCccCCCHHHHh--ccChHHHHHHhcccC
Confidence 799998865 5999999999999999999999999999999999999999995544444 588999999988764
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.59 E-value=4.1e-15 Score=120.92 Aligned_cols=145 Identities=28% Similarity=0.427 Sum_probs=78.5
Q ss_pred CCCCCC-ccchhhhcccCCCEEEecCCcce-ecCccccCCC--------------CCChhhhcCcccceEecccCCCc-c
Q psy3049 2 NDNNLT-RLSGDISLLINLRTLDISNNKLR-YLPSEIGAVK--------------NLSPDLWQFTHLTALYMNDNNLT-R 64 (157)
Q Consensus 2 ~~n~i~-~l~~~~~~l~~L~~L~l~~~~l~-~~~~~~~~~~--------------~~~~~~~~~~~L~~l~l~~~~~~-~ 64 (157)
++|.++ .+|..++.+++|+.|++++|.+. .+|..++.+. .+|+.+..+++|+++++++|.++ .
T Consensus 148 s~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~ 227 (968)
T PLN00113 148 SNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGE 227 (968)
T ss_pred cCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCc
Confidence 455555 45555666777777777776664 3444333221 12445555556666666666555 3
Q ss_pred ccccccccccccEEeccCCCCC-CCChhhhCccccceEEcCCCccc-CcchhhcCcCCCcEEEccCCCCCChhHHhhcCC
Q psy3049 65 LSGDISLLINLRTLDISNNKLR-YLPSEIGDLIYLRELCLNNNNLR-TLPYELGKLFQIQILGLHGNPLSKDYMKIYNEP 142 (157)
Q Consensus 65 ~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~l~~l~l~~n~l~-~l~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~ 142 (157)
+|..++.+++|++|++.+|.++ .+|..+..+++|+.|++.+|.+. .+|..+.++++|+++++++|.+.+.+|..+..+
T Consensus 228 ~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l 307 (968)
T PLN00113 228 IPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQL 307 (968)
T ss_pred CChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCC
Confidence 4445555556666666655554 34555555555555555555554 344445555555555555555555555555444
Q ss_pred CChH
Q psy3049 143 NGTQ 146 (157)
Q Consensus 143 ~~l~ 146 (157)
..++
T Consensus 308 ~~L~ 311 (968)
T PLN00113 308 QNLE 311 (968)
T ss_pred CCCc
Confidence 4443
No 5
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.57 E-value=8.1e-15 Score=119.20 Aligned_cols=146 Identities=27% Similarity=0.361 Sum_probs=90.2
Q ss_pred CCCCCCC-ccchhhhcccCCCEEEecCCcce-ecCccccCCC--------------CCChhhhcCcccceEecccCCCc-
Q psy3049 1 MNDNNLT-RLSGDISLLINLRTLDISNNKLR-YLPSEIGAVK--------------NLSPDLWQFTHLTALYMNDNNLT- 63 (157)
Q Consensus 1 l~~n~i~-~l~~~~~~l~~L~~L~l~~~~l~-~~~~~~~~~~--------------~~~~~~~~~~~L~~l~l~~~~~~- 63 (157)
+++|.++ .+|..+.++++|+.|++++|.+. .+|+.++.+. .+|..+..+++|++|++++|.++
T Consensus 171 L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~ 250 (968)
T PLN00113 171 LGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTG 250 (968)
T ss_pred CccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceecc
Confidence 3556665 45666777777777777777765 3454443322 23555666777777777777765
Q ss_pred cccccccccccccEEeccCCCCC-CCChhhhCccccceEEcCCCccc-CcchhhcCcCCCcEEEccCCCCCChhHHhhcC
Q psy3049 64 RLSGDISLLINLRTLDISNNKLR-YLPSEIGDLIYLRELCLNNNNLR-TLPYELGKLFQIQILGLHGNPLSKDYMKIYNE 141 (157)
Q Consensus 64 ~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~l~~l~l~~n~l~-~l~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~ 141 (157)
.+|..++.+++|+.|++.+|.++ .+|..+..+++|+.+++++|.+. .+|..+.++++|+++++++|.+.+..+..+..
T Consensus 251 ~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~ 330 (968)
T PLN00113 251 PIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTS 330 (968)
T ss_pred ccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhc
Confidence 34556666667777777766664 45556666666666666666665 44555566666666666666666555555555
Q ss_pred CCChH
Q psy3049 142 PNGTQ 146 (157)
Q Consensus 142 ~~~l~ 146 (157)
++.++
T Consensus 331 l~~L~ 335 (968)
T PLN00113 331 LPRLQ 335 (968)
T ss_pred CCCCC
Confidence 44443
No 6
>KOG0472|consensus
Probab=99.56 E-value=6.9e-16 Score=111.12 Aligned_cols=108 Identities=36% Similarity=0.561 Sum_probs=72.8
Q ss_pred hhhcCcccceEecccCCCccccccc-cccccccEEeccCCCCCCCChhhhCccccceEEcCCCcccCcchhhcCcCCCcE
Q psy3049 45 DLWQFTHLTALYMNDNNLTRLSGDI-SLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLRTLPYELGKLFQIQI 123 (157)
Q Consensus 45 ~~~~~~~L~~l~l~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~l~~n~l~~l~~~~~~~~~L~~ 123 (157)
+|.++..|..+.+..|++..+|... ..+.++..||+.+|+++++|..++-+.+++.+|+++|.++.+|..++++ .|+.
T Consensus 223 ef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke~Pde~clLrsL~rLDlSNN~is~Lp~sLgnl-hL~~ 301 (565)
T KOG0472|consen 223 EFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKEVPDEICLLRSLERLDLSNNDISSLPYSLGNL-HLKF 301 (565)
T ss_pred CCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccccCchHHHHhhhhhhhcccCCccccCCcccccc-eeee
Confidence 3444444444444444444444322 2566677777777777777777777777777777777777777777777 7777
Q ss_pred EEccCCCCCChhHHhhcCCCChHHHHHHHHhh
Q psy3049 124 LGLHGNPLSKDYMKIYNEPNGTQKLLSYLLDS 155 (157)
Q Consensus 124 l~l~~n~~~~~~~~~~~~~~~l~~l~~~~~~~ 155 (157)
+.+.+|++...-.+++. ++++++++|++.+
T Consensus 302 L~leGNPlrTiRr~ii~--~gT~~vLKyLrs~ 331 (565)
T KOG0472|consen 302 LALEGNPLRTIRREIIS--KGTQEVLKYLRSK 331 (565)
T ss_pred hhhcCCchHHHHHHHHc--ccHHHHHHHHHHh
Confidence 77777777766667776 7888888888764
No 7
>KOG4194|consensus
Probab=99.55 E-value=5.3e-16 Score=116.24 Aligned_cols=138 Identities=25% Similarity=0.343 Sum_probs=112.4
Q ss_pred CCCCCCccchh-hhcccCCCEEEecCCcceecCccccCCCCCChhhhcCcccceEecccCCCccc-cccccccccccEEe
Q psy3049 2 NDNNLTRLSGD-ISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTRL-SGDISLLINLRTLD 79 (157)
Q Consensus 2 ~~n~i~~l~~~-~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~-~~~~~~~~~L~~L~ 79 (157)
..|.|..+.+. |..|.++++|++..|+++.+.+.. +.++.+|+.|+++.|.++.+ +..|...++|+.|+
T Consensus 253 qrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~---------lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~Ld 323 (873)
T KOG4194|consen 253 QRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGW---------LFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELD 323 (873)
T ss_pred hhcCcccccCcceeeecccceeecccchhhhhhccc---------ccccchhhhhccchhhhheeecchhhhcccceeEe
Confidence 45777777644 777888888888888888776642 66889999999999999976 46788899999999
Q ss_pred ccCCCCCCCCh-hhhCccccceEEcCCCcccCcchh-hcCcCCCcEEEccCCCCCChhHHh---hcCCCChHHH
Q psy3049 80 ISNNKLRYLPS-EIGDLIYLRELCLNNNNLRTLPYE-LGKLFQIQILGLHGNPLSKDYMKI---YNEPNGTQKL 148 (157)
Q Consensus 80 l~~~~~~~~~~-~~~~~~~l~~l~l~~n~l~~l~~~-~~~~~~L~~l~l~~n~~~~~~~~~---~~~~~~l~~l 148 (157)
++.|+++.+++ .+..+..|+.|+++.|.+..+.+. |..+.+|+.|||++|.+++.+++. |.++++++++
T Consensus 324 Ls~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL 397 (873)
T KOG4194|consen 324 LSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKL 397 (873)
T ss_pred ccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhhe
Confidence 99999999865 788889999999999999988755 888999999999999998776654 5555555554
No 8
>KOG4194|consensus
Probab=99.54 E-value=1.3e-15 Score=114.17 Aligned_cols=139 Identities=24% Similarity=0.363 Sum_probs=110.2
Q ss_pred CCCCCCCccchh-hhcccCCCEEEecCCcceecCccccCCCCCChhhhcCcccceEecccCCCccccc-cccccccccEE
Q psy3049 1 MNDNNLTRLSGD-ISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTRLSG-DISLLINLRTL 78 (157)
Q Consensus 1 l~~n~i~~l~~~-~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~-~~~~~~~L~~L 78 (157)
+|.|.|..|..+ +..+++|++|+++.|+++++++. +|..+..|+.|+++.|.++.+.. .+..+.+|+.|
T Consensus 300 lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~---------sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~L 370 (873)
T KOG4194|consen 300 LSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEG---------SFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKL 370 (873)
T ss_pred cchhhhheeecchhhhcccceeEeccccccccCChh---------HHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhh
Confidence 466777766533 67777777777777777777664 46677788888888888886643 46678899999
Q ss_pred eccCCCCC----CCChhhhCccccceEEcCCCcccCcch-hhcCcCCCcEEEccCCCCCChhHHhhcCCCChHHHH
Q psy3049 79 DISNNKLR----YLPSEIGDLIYLRELCLNNNNLRTLPY-ELGKLFQIQILGLHGNPLSKDYMKIYNEPNGTQKLL 149 (157)
Q Consensus 79 ~l~~~~~~----~~~~~~~~~~~l~~l~l~~n~l~~l~~-~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~l~~l~ 149 (157)
++.+|.++ .-...+..+++|+.|.+-+|+++.||+ .|.+++.|++|||.+|.+...-++.|..| .++++.
T Consensus 371 dLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv 445 (873)
T KOG4194|consen 371 DLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELV 445 (873)
T ss_pred cCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhh
Confidence 99999877 223357778999999999999999985 58999999999999999999999999887 777773
No 9
>KOG0444|consensus
Probab=99.54 E-value=5.5e-16 Score=117.41 Aligned_cols=147 Identities=33% Similarity=0.429 Sum_probs=75.5
Q ss_pred CCCCCCCccchhhhcccCCCEEEecCCcce-----ecCcc--cc---------CCCCCChhhhcCcccceEecccCCCcc
Q psy3049 1 MNDNNLTRLSGDISLLINLRTLDISNNKLR-----YLPSE--IG---------AVKNLSPDLWQFTHLTALYMNDNNLTR 64 (157)
Q Consensus 1 l~~n~i~~l~~~~~~l~~L~~L~l~~~~l~-----~~~~~--~~---------~~~~~~~~~~~~~~L~~l~l~~~~~~~ 64 (157)
||+|++..+|+.++.+.+|+.|++++|.+. .+|+- +. .+..+|.++..+.+|.-++++.|.+..
T Consensus 157 LS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~ 236 (1255)
T KOG0444|consen 157 LSNNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPI 236 (1255)
T ss_pred cccchhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCc
Confidence 456666666666666666666666666543 22220 00 011234444444445555555555544
Q ss_pred cccccccccc-----------------------ccEEeccCCCCCCCChhhhCccccceEEcCCCccc--CcchhhcCcC
Q psy3049 65 LSGDISLLIN-----------------------LRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLR--TLPYELGKLF 119 (157)
Q Consensus 65 ~~~~~~~~~~-----------------------L~~L~l~~~~~~~~~~~~~~~~~l~~l~l~~n~l~--~l~~~~~~~~ 119 (157)
+|.-+.++.+ +++|++++|+++.+|.+++.++.|+.|.+.+|++. .+|+.|+.+.
T Consensus 237 vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~ 316 (1255)
T KOG0444|consen 237 VPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLI 316 (1255)
T ss_pred chHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccchhccchHHHhhhHHHHHHHhccCcccccCCccchhhhh
Confidence 4444444444 44555555555555555555555555555555444 4555555555
Q ss_pred CCcEEEccCCCCCChhHHhhcCCCChHHH
Q psy3049 120 QIQILGLHGNPLSKDYMKIYNEPNGTQKL 148 (157)
Q Consensus 120 ~L~~l~l~~n~~~~~~~~~~~~~~~l~~l 148 (157)
+|+.+...+|.+. ..|+.+++|..++++
T Consensus 317 ~Levf~aanN~LE-lVPEglcRC~kL~kL 344 (1255)
T KOG0444|consen 317 QLEVFHAANNKLE-LVPEGLCRCVKLQKL 344 (1255)
T ss_pred hhHHHHhhccccc-cCchhhhhhHHHHHh
Confidence 5555555555443 456666666666655
No 10
>KOG0532|consensus
Probab=99.54 E-value=2.1e-16 Score=117.71 Aligned_cols=148 Identities=28% Similarity=0.461 Sum_probs=128.0
Q ss_pred CCCCCCccchhhhcccCCCEEEecCCcceecCccccC------------CCCCChhhhcCcccceEecccCCCccccccc
Q psy3049 2 NDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGA------------VKNLSPDLWQFTHLTALYMNDNNLTRLSGDI 69 (157)
Q Consensus 2 ~~n~i~~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~------------~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~ 69 (157)
+.|.|..+|..++.+..|+.++|+.|+++.+|..+.. +..+|+.+...++|..++.+.|.+..+|..+
T Consensus 106 y~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lpLkvli~sNNkl~~lp~~ig~~~tl~~ld~s~nei~slpsql 185 (722)
T KOG0532|consen 106 YHNCIRTIPEAICNLEALTFLDLSSNQLSHLPDGLCDLPLKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQL 185 (722)
T ss_pred HhccceecchhhhhhhHHHHhhhccchhhcCChhhhcCcceeEEEecCccccCCcccccchhHHHhhhhhhhhhhchHHh
Confidence 4677777887788888888888888888888876643 3446777777788999999999999999999
Q ss_pred cccccccEEeccCCCCCCCChhhhCccccceEEcCCCcccCcchhhcCcCCCcEEEccCCCCCChhHHhhcCCCChHHHH
Q psy3049 70 SLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLRTLPYELGKLFQIQILGLHGNPLSKDYMKIYNEPNGTQKLL 149 (157)
Q Consensus 70 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~l~~n~l~~l~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~l~~l~ 149 (157)
+.+.+|+.+.+.+|++..+|+.+.. -.|..||++.|++..+|-.|.+|..|+++-|.+|++...++.++. .+..+||
T Consensus 186 ~~l~slr~l~vrRn~l~~lp~El~~-LpLi~lDfScNkis~iPv~fr~m~~Lq~l~LenNPLqSPPAqIC~--kGkVHIF 262 (722)
T KOG0532|consen 186 GYLTSLRDLNVRRNHLEDLPEELCS-LPLIRLDFSCNKISYLPVDFRKMRHLQVLQLENNPLQSPPAQICE--KGKVHIF 262 (722)
T ss_pred hhHHHHHHHHHhhhhhhhCCHHHhC-CceeeeecccCceeecchhhhhhhhheeeeeccCCCCCChHHHHh--ccceeee
Confidence 9999999999999999999998884 457789999999999999999999999999999999999998886 8888998
Q ss_pred HHH
Q psy3049 150 SYL 152 (157)
Q Consensus 150 ~~~ 152 (157)
+|+
T Consensus 263 KyL 265 (722)
T KOG0532|consen 263 KYL 265 (722)
T ss_pred eee
Confidence 886
No 11
>KOG0444|consensus
Probab=99.47 E-value=5e-15 Score=112.33 Aligned_cols=142 Identities=25% Similarity=0.385 Sum_probs=107.4
Q ss_pred CCCccchhhhcccCCCEEEecCCcceecCccccCCC---------------CCChhhhcCcccceEecccCCCccccccc
Q psy3049 5 NLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVK---------------NLSPDLWQFTHLTALYMNDNNLTRLSGDI 69 (157)
Q Consensus 5 ~i~~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~---------------~~~~~~~~~~~L~~l~l~~~~~~~~~~~~ 69 (157)
.+..+|.+++.+.+|++|.++.|++..+..++++++ .+|+.+.++.-|+.+++++|++..+|..+
T Consensus 43 ~L~~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~EvP~~L 122 (1255)
T KOG0444|consen 43 KLEQVPEELSRLQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLREVPTNL 122 (1255)
T ss_pred hhhhChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhccccccCCCCchhcccccceeeecchhhhhhcchhh
Confidence 344566666666666666666666655544443332 25778888888999999999999999888
Q ss_pred cccccccEEeccCCCCCCCChh-hhCccccceEEcCCCcccCcchhhcCcCCCcEEEccCCCCCChhHHhhcCCCChH
Q psy3049 70 SLLINLRTLDISNNKLRYLPSE-IGDLIYLRELCLNNNNLRTLPYELGKLFQIQILGLHGNPLSKDYMKIYNEPNGTQ 146 (157)
Q Consensus 70 ~~~~~L~~L~l~~~~~~~~~~~-~~~~~~l~~l~l~~n~l~~l~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~l~ 146 (157)
..-.++..|++++|+|..+|.. +.++..|..|++++|++..+|+.+.++..|++|+|++|++.-.--..+..|.++.
T Consensus 123 E~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~ 200 (1255)
T KOG0444|consen 123 EYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLS 200 (1255)
T ss_pred hhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhh
Confidence 8888889999999999999864 5578888999999999999999999999999999999987644333443344443
No 12
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.44 E-value=3.3e-13 Score=88.90 Aligned_cols=118 Identities=29% Similarity=0.504 Sum_probs=42.2
Q ss_pred CCCCccchhhhcccCCCEEEecCCcceecCccccCCCCCChhhh-cCcccceEecccCCCccccccccccccccEEeccC
Q psy3049 4 NNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLW-QFTHLTALYMNDNNLTRLSGDISLLINLRTLDISN 82 (157)
Q Consensus 4 n~i~~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~-~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~ 82 (157)
+-|.+++. +.+...+++|++++|.|+.+.. +. .+.+|+.|++++|.++.+. .+..+..|+.|++++
T Consensus 7 ~~i~~~~~-~~n~~~~~~L~L~~n~I~~Ie~-----------L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~ 73 (175)
T PF14580_consen 7 NMIEQIAQ-YNNPVKLRELNLRGNQISTIEN-----------LGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSN 73 (175)
T ss_dssp ------------------------------S-------------TT-TT--EEE-TTS--S--T-T----TT--EEE--S
T ss_pred cccccccc-cccccccccccccccccccccc-----------hhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCC
Confidence 44455443 3455578899999999987632 22 3567899999999998775 466788999999999
Q ss_pred CCCCCCChhh-hCccccceEEcCCCcccCcc--hhhcCcCCCcEEEccCCCCCCh
Q psy3049 83 NKLRYLPSEI-GDLIYLRELCLNNNNLRTLP--YELGKLFQIQILGLHGNPLSKD 134 (157)
Q Consensus 83 ~~~~~~~~~~-~~~~~l~~l~l~~n~l~~l~--~~~~~~~~L~~l~l~~n~~~~~ 134 (157)
|.++.+...+ ..+++|++|.+++|+|..+. ..+..+++|+.+++.+|+++..
T Consensus 74 N~I~~i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~ 128 (175)
T PF14580_consen 74 NRISSISEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEK 128 (175)
T ss_dssp S---S-CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGS
T ss_pred CCCCccccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccch
Confidence 9998887655 35789999999999988654 3477889999999999988643
No 13
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.37 E-value=9.7e-13 Score=86.67 Aligned_cols=115 Identities=28% Similarity=0.386 Sum_probs=54.8
Q ss_pred CCCCCCCccchhhh-cccCCCEEEecCCcceecCccccCCCCCChhhhcCcccceEecccCCCccccccc-cccccccEE
Q psy3049 1 MNDNNLTRLSGDIS-LLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTRLSGDI-SLLINLRTL 78 (157)
Q Consensus 1 l~~n~i~~l~~~~~-~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~-~~~~~L~~L 78 (157)
|.+|.|+.+. .++ .+.+|+.|++++|.++.++. +..++.|++|++++|.++.+...+ ..+++|+.|
T Consensus 26 L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N~I~~l~~-----------l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L 93 (175)
T PF14580_consen 26 LRGNQISTIE-NLGATLDKLEVLDLSNNQITKLEG-----------LPGLPRLKTLDLSNNRISSISEGLDKNLPNLQEL 93 (175)
T ss_dssp -----------S--TT-TT--EEE-TTS--S--TT---------------TT--EEE--SS---S-CHHHHHH-TT--EE
T ss_pred cccccccccc-chhhhhcCCCEEECCCCCCccccC-----------ccChhhhhhcccCCCCCCccccchHHhCCcCCEE
Confidence 4678888875 355 58899999999999998752 456788999999999999886544 468999999
Q ss_pred eccCCCCCCCC--hhhhCccccceEEcCCCcccCcch----hhcCcCCCcEEEcc
Q psy3049 79 DISNNKLRYLP--SEIGDLIYLRELCLNNNNLRTLPY----ELGKLFQIQILGLH 127 (157)
Q Consensus 79 ~l~~~~~~~~~--~~~~~~~~l~~l~l~~n~l~~l~~----~~~~~~~L~~l~l~ 127 (157)
++++|++..+. ..+..+++|+.|++.+|.++.-+. .+..+|+|+.||-.
T Consensus 94 ~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 94 YLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp E-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTE
T ss_pred ECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCE
Confidence 99999998663 467889999999999999995543 27889999999753
No 14
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.33 E-value=4.6e-12 Score=99.87 Aligned_cols=114 Identities=31% Similarity=0.355 Sum_probs=82.0
Q ss_pred CCCEEEecCCcceecCccccCCC----------CCChhhhcCcccceEecccCCCccccccccccccccEEeccCCCCCC
Q psy3049 18 NLRTLDISNNKLRYLPSEIGAVK----------NLSPDLWQFTHLTALYMNDNNLTRLSGDISLLINLRTLDISNNKLRY 87 (157)
Q Consensus 18 ~L~~L~l~~~~l~~~~~~~~~~~----------~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 87 (157)
+|+.|++++|+++.+|.....+. .+|.. ...|+.|++++|.++.+|.. ..+|+.|++++|.++.
T Consensus 343 ~Lq~LdLS~N~Ls~LP~lp~~L~~L~Ls~N~L~~LP~l---~~~L~~LdLs~N~Lt~LP~l---~s~L~~LdLS~N~Lss 416 (788)
T PRK15387 343 GLQELSVSDNQLASLPTLPSELYKLWAYNNRLTSLPAL---PSGLKELIVSGNRLTSLPVL---PSELKELMVSGNRLTS 416 (788)
T ss_pred ccceEecCCCccCCCCCCCcccceehhhccccccCccc---ccccceEEecCCcccCCCCc---ccCCCEEEccCCcCCC
Confidence 56677777777776654322221 12211 13567777777777766543 3467888888888887
Q ss_pred CChhhhCccccceEEcCCCcccCcchhhcCcCCCcEEEccCCCCCChhHHhhc
Q psy3049 88 LPSEIGDLIYLRELCLNNNNLRTLPYELGKLFQIQILGLHGNPLSKDYMKIYN 140 (157)
Q Consensus 88 ~~~~~~~~~~l~~l~l~~n~l~~l~~~~~~~~~L~~l~l~~n~~~~~~~~~~~ 140 (157)
+|... .+|+.|++++|+++.+|..+.+++.+..+++++|++++..+..+.
T Consensus 417 IP~l~---~~L~~L~Ls~NqLt~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L~ 466 (788)
T PRK15387 417 LPMLP---SGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPLSERTLQALR 466 (788)
T ss_pred CCcch---hhhhhhhhccCcccccChHHhhccCCCeEECCCCCCCchHHHHHH
Confidence 77532 467889999999999999999999999999999999999888763
No 15
>KOG1259|consensus
Probab=99.32 E-value=3.4e-13 Score=94.50 Aligned_cols=122 Identities=30% Similarity=0.428 Sum_probs=98.2
Q ss_pred CCCCCCCccchhhhcccCCCEEEecCCcceecCccccCCCCCChhhhcCcccceEecccCCCccccccccccccccEEec
Q psy3049 1 MNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTRLSGDISLLINLRTLDI 80 (157)
Q Consensus 1 l~~n~i~~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l 80 (157)
||+|.|+.+..++.-.+.++.|+++.|++..+.. +..+++|+.|++++|.++.+..+-.++.+.++|.+
T Consensus 291 LS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~n-----------La~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~L 359 (490)
T KOG1259|consen 291 LSGNLITQIDESVKLAPKLRRLILSQNRIRTVQN-----------LAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKL 359 (490)
T ss_pred ccccchhhhhhhhhhccceeEEeccccceeeehh-----------hhhcccceEeecccchhHhhhhhHhhhcCEeeeeh
Confidence 5778888887777778888888888888886643 44667889999999988877666567778888999
Q ss_pred cCCCCCCCChhhhCccccceEEcCCCcccCcch--hhcCcCCCcEEEccCCCCCCh
Q psy3049 81 SNNKLRYLPSEIGDLIYLRELCLNNNNLRTLPY--ELGKLFQIQILGLHGNPLSKD 134 (157)
Q Consensus 81 ~~~~~~~~~~~~~~~~~l~~l~l~~n~l~~l~~--~~~~~~~L~~l~l~~n~~~~~ 134 (157)
++|.+..+ ..+..+-+|..||+++|+|..+.. .++++|.|+++.|.+|++.+.
T Consensus 360 a~N~iE~L-SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~ 414 (490)
T KOG1259|consen 360 AQNKIETL-SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGS 414 (490)
T ss_pred hhhhHhhh-hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcccc
Confidence 99888655 345677889999999999997764 499999999999999998855
No 16
>KOG0618|consensus
Probab=99.31 E-value=4.7e-13 Score=104.77 Aligned_cols=130 Identities=28% Similarity=0.330 Sum_probs=107.2
Q ss_pred CCCCCCc-cchhhhcccCCCEEEecCCcceecCccccCCCCCChhhhcCcccceEecccCCCccccccccccccccEEec
Q psy3049 2 NDNNLTR-LSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTRLSGDISLLINLRTLDI 80 (157)
Q Consensus 2 ~~n~i~~-l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l 80 (157)
.+|.+++ .-+.+.++++|+.|++++|+++.+|+. .+.++..|+.|++++|.++.+|.....+..|++|..
T Consensus 367 anN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas---------~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~a 437 (1081)
T KOG0618|consen 367 ANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPAS---------KLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRA 437 (1081)
T ss_pred hcCcccccchhhhccccceeeeeecccccccCCHH---------HHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhh
Confidence 4677774 224578999999999999999999885 367888999999999999999988889999999999
Q ss_pred cCCCCCCCChhhhCccccceEEcCCCcccCcch-hhcCcCCCcEEEccCCCCCChhHHhhcC
Q psy3049 81 SNNKLRYLPSEIGDLIYLRELCLNNNNLRTLPY-ELGKLFQIQILGLHGNPLSKDYMKIYNE 141 (157)
Q Consensus 81 ~~~~~~~~~~~~~~~~~l~~l~l~~n~l~~l~~-~~~~~~~L~~l~l~~n~~~~~~~~~~~~ 141 (157)
.+|.+..+| .+..++.++.+|++.|+++.+-- +....++|++||+++|.........++.
T Consensus 438 hsN~l~~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~~l~~d~~~l~~ 498 (1081)
T KOG0618|consen 438 HSNQLLSFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNTRLVFDHKTLKV 498 (1081)
T ss_pred cCCceeech-hhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCcccccchhhhHH
Confidence 999999999 77889999999999999994422 2223389999999999865555555543
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.25 E-value=2.8e-11 Score=95.64 Aligned_cols=60 Identities=28% Similarity=0.335 Sum_probs=40.2
Q ss_pred ccccEEeccCCCCCCCChhhhCccccceEEcCCCcccCcchhhcCcCCCcEEEccCCCCCChhH
Q psy3049 73 INLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLRTLPYELGKLFQIQILGLHGNPLSKDYM 136 (157)
Q Consensus 73 ~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~l~~n~l~~l~~~~~~~~~L~~l~l~~n~~~~~~~ 136 (157)
++|+.|++.+|.++.+|..+. ++|+.|++++|+++.+|..+. +.|++|++++|.+...++
T Consensus 325 ~sL~~L~Ls~N~Lt~LP~~l~--~sL~~L~Ls~N~L~~LP~~lp--~~L~~LdLs~N~Lt~LP~ 384 (754)
T PRK15370 325 PGLKTLEAGENALTSLPASLP--PELQVLDVSKNQITVLPETLP--PTITTLDVSRNALTNLPE 384 (754)
T ss_pred ccceeccccCCccccCChhhc--CcccEEECCCCCCCcCChhhc--CCcCEEECCCCcCCCCCH
Confidence 356666666666666665442 577778888887777776542 577788888887775433
No 18
>KOG0532|consensus
Probab=99.17 E-value=7e-13 Score=99.29 Aligned_cols=146 Identities=29% Similarity=0.446 Sum_probs=114.8
Q ss_pred CCCCCCCccchhhhcccCCCEEEecCCcceecCccccCC-------------CCCChhhhcCcccceEecccCCCccccc
Q psy3049 1 MNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAV-------------KNLSPDLWQFTHLTALYMNDNNLTRLSG 67 (157)
Q Consensus 1 l~~n~i~~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~-------------~~~~~~~~~~~~L~~l~l~~~~~~~~~~ 67 (157)
++.|++..+|.+++.+..|..+.+..|++..+|..+..+ ..+|..++.++ |+.+.+++|+++.+|.
T Consensus 82 lsrNR~~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sNNkl~~lp~ 160 (722)
T KOG0532|consen 82 LSRNRFSELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSNNKLTSLPE 160 (722)
T ss_pred ccccccccCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEecCccccCCc
Confidence 467888888888888888888888888888777765533 23466666666 7888888888888887
Q ss_pred cccccccccEEeccCCCCCCCChhhhCccccceEEcCCCcccCcchhhcCcCCCcEEEccCCCCCChhHHhhcCCCChHH
Q psy3049 68 DISLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLRTLPYELGKLFQIQILGLHGNPLSKDYMKIYNEPNGTQK 147 (157)
Q Consensus 68 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~l~~n~l~~l~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~l~~ 147 (157)
.++...++..++.+.|.+..+|..++.+.+++.+++++|++..+|.+.. .-.|..||++.|++. .+|-.|..|..|+.
T Consensus 161 ~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~~lp~El~-~LpLi~lDfScNkis-~iPv~fr~m~~Lq~ 238 (722)
T KOG0532|consen 161 EIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLEDLPEELC-SLPLIRLDFSCNKIS-YLPVDFRKMRHLQV 238 (722)
T ss_pred ccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhhhCCHHHh-CCceeeeecccCcee-ecchhhhhhhhhee
Confidence 7777778888888888888888888888888888888999888888877 455789999999988 66888888877776
Q ss_pred HH
Q psy3049 148 LL 149 (157)
Q Consensus 148 l~ 149 (157)
|.
T Consensus 239 l~ 240 (722)
T KOG0532|consen 239 LQ 240 (722)
T ss_pred ee
Confidence 63
No 19
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.16 E-value=2.4e-10 Score=90.47 Aligned_cols=112 Identities=26% Similarity=0.417 Sum_probs=64.4
Q ss_pred CCCCCCccchhhhcccCCCEEEecCCcceecCccccCCCCCChhhhcCcccceEecccCCCccccccccccccccEEecc
Q psy3049 2 NDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTRLSGDISLLINLRTLDIS 81 (157)
Q Consensus 2 ~~n~i~~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~ 81 (157)
+++.++.+|..+. ..++.|++++|.++.+|..+ .++|++|++++|.++.+|..+. .+|+.|+++
T Consensus 186 ~~~~LtsLP~~Ip--~~L~~L~Ls~N~LtsLP~~l------------~~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls 249 (754)
T PRK15370 186 KILGLTTIPACIP--EQITTLILDNNELKSLPENL------------QGNIKTLYANSNQLTSIPATLP--DTIQEMELS 249 (754)
T ss_pred CCCCcCcCCcccc--cCCcEEEecCCCCCcCChhh------------ccCCCEEECCCCccccCChhhh--ccccEEECc
Confidence 4556666665442 35777777777777666542 1256666666666665554322 345666666
Q ss_pred CCCCCCCChhhhCccccceEEcCCCcccCcchhhcCcCCCcEEEccCCCCCC
Q psy3049 82 NNKLRYLPSEIGDLIYLRELCLNNNNLRTLPYELGKLFQIQILGLHGNPLSK 133 (157)
Q Consensus 82 ~~~~~~~~~~~~~~~~l~~l~l~~n~l~~l~~~~~~~~~L~~l~l~~n~~~~ 133 (157)
+|.++.+|..+. .+|+.|++++|+++.+|..+. ++|+.|++++|.+.+
T Consensus 250 ~N~L~~LP~~l~--s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N~Lt~ 297 (754)
T PRK15370 250 INRITELPERLP--SALQSLDLFHNKISCLPENLP--EELRYLSVYDNSIRT 297 (754)
T ss_pred CCccCcCChhHh--CCCCEEECcCCccCccccccC--CCCcEEECCCCcccc
Confidence 666665555442 356666666666665555432 356666666665554
No 20
>KOG0618|consensus
Probab=99.13 E-value=9e-12 Score=97.76 Aligned_cols=130 Identities=35% Similarity=0.473 Sum_probs=77.9
Q ss_pred CCCCCCccchhhhcccCCCEEEecCCcceecCccccCC------------------C----------------------C
Q psy3049 2 NDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAV------------------K----------------------N 41 (157)
Q Consensus 2 ~~n~i~~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~------------------~----------------------~ 41 (157)
..|.+..+|+....++.|+.|++..|.+..+|+.+-.. + .
T Consensus 295 ~~nel~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~ 374 (1081)
T KOG0618|consen 295 AYNELEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDS 374 (1081)
T ss_pred hhhhhhhCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCccccc
Confidence 35778888888888999999999999999888744210 0 0
Q ss_pred CChhhhcCcccceEecccCCCcccccc-ccccccccEEeccCCCCCCCChhhhCccccceEEcCCCcccCcchhhcCcCC
Q psy3049 42 LSPDLWQFTHLTALYMNDNNLTRLSGD-ISLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLRTLPYELGKLFQ 120 (157)
Q Consensus 42 ~~~~~~~~~~L~~l~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~l~~n~l~~l~~~~~~~~~ 120 (157)
+.+-+..+++|+.|++++|.++.+|.. +.++..|+.|++++|.++.+|..+..++.|+.|...+|++..+| ++..+++
T Consensus 375 c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN~l~~fP-e~~~l~q 453 (1081)
T KOG0618|consen 375 CFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHSNQLLSFP-ELAQLPQ 453 (1081)
T ss_pred chhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCCceeech-hhhhcCc
Confidence 112333445555555555555544432 34444555555555555555555555555555555555555555 4555666
Q ss_pred CcEEEccCCCCC
Q psy3049 121 IQILGLHGNPLS 132 (157)
Q Consensus 121 L~~l~l~~n~~~ 132 (157)
|+.+|++.|.++
T Consensus 454 L~~lDlS~N~L~ 465 (1081)
T KOG0618|consen 454 LKVLDLSCNNLS 465 (1081)
T ss_pred ceEEecccchhh
Confidence 666666666665
No 21
>KOG4237|consensus
Probab=99.06 E-value=9.8e-12 Score=89.69 Aligned_cols=124 Identities=23% Similarity=0.383 Sum_probs=99.8
Q ss_pred CCCCCCCccchh-hhcccCCCEEEecCCcceecCccccCCCCCChhhhcCcccceEeccc-CCCccccc-cccccccccE
Q psy3049 1 MNDNNLTRLSGD-ISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMND-NNLTRLSG-DISLLINLRT 77 (157)
Q Consensus 1 l~~n~i~~l~~~-~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~-~~~~~~~~-~~~~~~~L~~ 77 (157)
|..|+|+.||+. |..+++|+.||++.|+|+.+.++ .|.+++.+..+-+-+ |.++.+|. .|+.+..++.
T Consensus 74 LdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~---------AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqr 144 (498)
T KOG4237|consen 74 LDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPD---------AFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQR 144 (498)
T ss_pred eccCCcccCChhhccchhhhceecccccchhhcChH---------hhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHH
Confidence 346889999866 88999999999999999987764 366777766665555 88988874 5788888888
Q ss_pred EeccCCCCCCCC-hhhhCccccceEEcCCCcccCcch-hhcCcCCCcEEEccCCCCCC
Q psy3049 78 LDISNNKLRYLP-SEIGDLIYLRELCLNNNNLRTLPY-ELGKLFQIQILGLHGNPLSK 133 (157)
Q Consensus 78 L~l~~~~~~~~~-~~~~~~~~l~~l~l~~n~l~~l~~-~~~~~~~L~~l~l~~n~~~~ 133 (157)
|.+.-|++..++ ..+.+++++..|.+-+|.+..++. .+..+..++.+++..|++.+
T Consensus 145 LllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~ic 202 (498)
T KOG4237|consen 145 LLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFIC 202 (498)
T ss_pred HhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCcccc
Confidence 888888888765 478889999999999999998887 47888899999998888543
No 22
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.06 E-value=7.5e-10 Score=87.62 Aligned_cols=116 Identities=31% Similarity=0.322 Sum_probs=69.4
Q ss_pred CCCCCCCccchhhhcccCCCEEEecCCcceecCccccCCCCCChhhhcCcccceEecccCCCcccccccc----------
Q psy3049 1 MNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTRLSGDIS---------- 70 (157)
Q Consensus 1 l~~n~i~~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~---------- 70 (157)
+++|.++.+|+.+. ++++.|++..|+++.+|... ++|++|++++|+++.+|....
T Consensus 208 Ls~~~LtsLP~~l~--~~L~~L~L~~N~Lt~LP~lp-------------~~Lk~LdLs~N~LtsLP~lp~sL~~L~Ls~N 272 (788)
T PRK15387 208 VGESGLTTLPDCLP--AHITTLVIPDNNLTSLPALP-------------PELRTLEVSGNQLTSLPVLPPGLLELSIFSN 272 (788)
T ss_pred cCCCCCCcCCcchh--cCCCEEEccCCcCCCCCCCC-------------CCCcEEEecCCccCcccCcccccceeeccCC
Confidence 45677777877654 36777777777777766421 345555555555544432110
Q ss_pred -------ccccccEEeccCCCCCCCChhhhCccccceEEcCCCcccCcchhh-------------cCc----CCCcEEEc
Q psy3049 71 -------LLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLRTLPYEL-------------GKL----FQIQILGL 126 (157)
Q Consensus 71 -------~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~l~~n~l~~l~~~~-------------~~~----~~L~~l~l 126 (157)
....|+.|++.+|.++.+|.. .++|+.|++++|+++.+|... ..+ .+|++|++
T Consensus 273 ~L~~Lp~lp~~L~~L~Ls~N~Lt~LP~~---p~~L~~LdLS~N~L~~Lp~lp~~L~~L~Ls~N~L~~LP~lp~~Lq~LdL 349 (788)
T PRK15387 273 PLTHLPALPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQLASLPALPSELCKLWAYNNQLTSLPTLPSGLQELSV 349 (788)
T ss_pred chhhhhhchhhcCEEECcCCcccccccc---ccccceeECCCCccccCCCCcccccccccccCccccccccccccceEec
Confidence 123455666666666666542 367888888888887665421 111 25778888
Q ss_pred cCCCCCCh
Q psy3049 127 HGNPLSKD 134 (157)
Q Consensus 127 ~~n~~~~~ 134 (157)
++|.+.+.
T Consensus 350 S~N~Ls~L 357 (788)
T PRK15387 350 SDNQLASL 357 (788)
T ss_pred CCCccCCC
Confidence 88887764
No 23
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.01 E-value=2.2e-09 Score=89.12 Aligned_cols=85 Identities=31% Similarity=0.421 Sum_probs=52.2
Q ss_pred hhhhcCcccceEecccCC-CccccccccccccccEEeccCC-CCCCCChhhhCccccceEEcCCC-cccCcchhhcCcCC
Q psy3049 44 PDLWQFTHLTALYMNDNN-LTRLSGDISLLINLRTLDISNN-KLRYLPSEIGDLIYLRELCLNNN-NLRTLPYELGKLFQ 120 (157)
Q Consensus 44 ~~~~~~~~L~~l~l~~~~-~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~l~~l~l~~n-~l~~l~~~~~~~~~ 120 (157)
..+..+++|+.++++++. +..+| .+..+++|+.|++.+| .+..+|..+..+++|+.|++++| .+..+|..+ ++++
T Consensus 628 ~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~s 705 (1153)
T PLN03210 628 DGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKS 705 (1153)
T ss_pred cccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCC
Confidence 334456667777777654 33443 4556677777777776 45566777777777777777765 445665543 4556
Q ss_pred CcEEEccCCC
Q psy3049 121 IQILGLHGNP 130 (157)
Q Consensus 121 L~~l~l~~n~ 130 (157)
|+++++++|.
T Consensus 706 L~~L~Lsgc~ 715 (1153)
T PLN03210 706 LYRLNLSGCS 715 (1153)
T ss_pred CCEEeCCCCC
Confidence 6666665554
No 24
>KOG4579|consensus
Probab=99.00 E-value=5.5e-11 Score=74.45 Aligned_cols=124 Identities=23% Similarity=0.349 Sum_probs=95.6
Q ss_pred CCCEEEecCCcceecCccccCCCCCChhhhcCcccceEecccCCCccccccc-cccccccEEeccCCCCCCCChhhhCcc
Q psy3049 18 NLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTRLSGDI-SLLINLRTLDISNNKLRYLPSEIGDLI 96 (157)
Q Consensus 18 ~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~ 96 (157)
.+-.++++.|++..+++... .+.+...|+.+++++|.+..+|+.+ .+++.++.+++.+|.++.+|..+..++
T Consensus 28 E~h~ldLssc~lm~i~davy-------~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~ 100 (177)
T KOG4579|consen 28 ELHFLDLSSCQLMYIADAVY-------MLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMP 100 (177)
T ss_pred HhhhcccccchhhHHHHHHH-------HHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhH
Confidence 35567888888877666443 2334556888899999998888765 456688899999999999998888899
Q ss_pred ccceEEcCCCcccCcchhhcCcCCCcEEEccCCCCCChhHHhhcCCCChHHHHH
Q psy3049 97 YLRELCLNNNNLRTLPYELGKLFQIQILGLHGNPLSKDYMKIYNEPNGTQKLLS 150 (157)
Q Consensus 97 ~l~~l~l~~n~l~~l~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~l~~l~~ 150 (157)
.|+.++++.|.+...|..+..+.++.+|+...|.+.....+.|. +.+..+.+
T Consensus 101 aLr~lNl~~N~l~~~p~vi~~L~~l~~Lds~~na~~eid~dl~~--s~~~al~~ 152 (177)
T KOG4579|consen 101 ALRSLNLRFNPLNAEPRVIAPLIKLDMLDSPENARAEIDVDLFY--SSLPALIK 152 (177)
T ss_pred HhhhcccccCccccchHHHHHHHhHHHhcCCCCccccCcHHHhc--cccHHHHH
Confidence 99999999999998888887888899999888887777666553 55555544
No 25
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.99 E-value=6.3e-10 Score=82.59 Aligned_cols=138 Identities=36% Similarity=0.522 Sum_probs=83.2
Q ss_pred CCCCCCccchhhhcccCCCEEEecCCcceecCccccC-------------CCCCChhhhcCcccceEecccCCCcccccc
Q psy3049 2 NDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGA-------------VKNLSPDLWQFTHLTALYMNDNNLTRLSGD 68 (157)
Q Consensus 2 ~~n~i~~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~-------------~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~ 68 (157)
++|.+..+|..++.+++|+.|+++.|++.+++...+. +..+|........|+++.+++|.....+..
T Consensus 148 ~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~ 227 (394)
T COG4886 148 SDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNSIIELLSS 227 (394)
T ss_pred cccchhhhhhhhhccccccccccCCchhhhhhhhhhhhhhhhheeccCCccccCchhhhhhhhhhhhhhcCCcceecchh
Confidence 4556666655566666666666666666665553210 111222222222344444444433333333
Q ss_pred ccccccccEEeccCCCCCCCChhhhCccccceEEcCCCcccCcchhhcCcCCCcEEEccCCCCCChhHHhhc
Q psy3049 69 ISLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLRTLPYELGKLFQIQILGLHGNPLSKDYMKIYN 140 (157)
Q Consensus 69 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~l~~n~l~~l~~~~~~~~~L~~l~l~~n~~~~~~~~~~~ 140 (157)
+..+..+..+.+.+|++..++..+..++.++.+++.+|.++.++. ++...+++++++++|.+...++....
T Consensus 228 ~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s~n~i~~i~~-~~~~~~l~~L~~s~n~~~~~~~~~~~ 298 (394)
T COG4886 228 LSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQISSISS-LGSLTNLRELDLSGNSLSNALPLIAL 298 (394)
T ss_pred hhhcccccccccCCceeeeccchhccccccceecccccccccccc-ccccCccCEEeccCccccccchhhhc
Confidence 344455555555566655556667777788889999998888877 78888899999999888766665554
No 26
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.98 E-value=4.7e-10 Score=61.46 Aligned_cols=58 Identities=41% Similarity=0.614 Sum_probs=37.8
Q ss_pred cccEEeccCCCCCCCCh-hhhCccccceEEcCCCcccCcch-hhcCcCCCcEEEccCCCC
Q psy3049 74 NLRTLDISNNKLRYLPS-EIGDLIYLRELCLNNNNLRTLPY-ELGKLFQIQILGLHGNPL 131 (157)
Q Consensus 74 ~L~~L~l~~~~~~~~~~-~~~~~~~l~~l~l~~n~l~~l~~-~~~~~~~L~~l~l~~n~~ 131 (157)
+|++|++++|.++.+|. .+..+++|+++++++|.++.++. .+.++++|+++++++|++
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 45666666666666653 45566777777777777776654 366777777777776653
No 27
>PLN03150 hypothetical protein; Provisional
Probab=98.98 E-value=1.7e-09 Score=84.55 Aligned_cols=88 Identities=31% Similarity=0.539 Sum_probs=42.3
Q ss_pred cceEecccCCCc-cccccccccccccEEeccCCCCC-CCChhhhCccccceEEcCCCccc-CcchhhcCcCCCcEEEccC
Q psy3049 52 LTALYMNDNNLT-RLSGDISLLINLRTLDISNNKLR-YLPSEIGDLIYLRELCLNNNNLR-TLPYELGKLFQIQILGLHG 128 (157)
Q Consensus 52 L~~l~l~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~l~~l~l~~n~l~-~l~~~~~~~~~L~~l~l~~ 128 (157)
++.|++++|.+. .+|..++.+.+|+.|++++|.++ .+|..+..+++|+.|++++|+++ .+|..++++++|++|++++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 344444444444 23444444455555555555443 34444444555555555555554 3444445555555555555
Q ss_pred CCCCChhHHhh
Q psy3049 129 NPLSKDYMKIY 139 (157)
Q Consensus 129 n~~~~~~~~~~ 139 (157)
|.+.|.+|..+
T Consensus 500 N~l~g~iP~~l 510 (623)
T PLN03150 500 NSLSGRVPAAL 510 (623)
T ss_pred CcccccCChHH
Confidence 55554444443
No 28
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.96 E-value=1.8e-09 Score=89.62 Aligned_cols=84 Identities=24% Similarity=0.410 Sum_probs=51.3
Q ss_pred CChhhhcCcccceEecccCC-CccccccccccccccEEeccCC-CCCCCChhhhCccccceEEcCCCcccCcchhhcCcC
Q psy3049 42 LSPDLWQFTHLTALYMNDNN-LTRLSGDISLLINLRTLDISNN-KLRYLPSEIGDLIYLRELCLNNNNLRTLPYELGKLF 119 (157)
Q Consensus 42 ~~~~~~~~~~L~~l~l~~~~-~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~l~~l~l~~n~l~~l~~~~~~~~ 119 (157)
+|..+..+++|+.|++++|. +..+|... .+++|+.|++++| .++.+|.. ..+++.|++++|.++.+|..+..++
T Consensus 794 lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~~iP~si~~l~ 869 (1153)
T PLN03210 794 LPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI---STNISDLNLSRTGIEEVPWWIEKFS 869 (1153)
T ss_pred cChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccccc---ccccCEeECCCCCCccChHHHhcCC
Confidence 34445556666666666653 44444332 4555666666654 33344432 2466777777787888887778888
Q ss_pred CCcEEEccCC
Q psy3049 120 QIQILGLHGN 129 (157)
Q Consensus 120 ~L~~l~l~~n 129 (157)
+|+.+++.++
T Consensus 870 ~L~~L~L~~C 879 (1153)
T PLN03210 870 NLSFLDMNGC 879 (1153)
T ss_pred CCCEEECCCC
Confidence 8888888774
No 29
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.96 E-value=8.5e-10 Score=79.38 Aligned_cols=87 Identities=26% Similarity=0.364 Sum_probs=47.6
Q ss_pred cCcccceEecccCCCcc-----ccccccccccccEEeccCCCCCCC-Chhhh-----CccccceEEcCCCccc-----Cc
Q psy3049 48 QFTHLTALYMNDNNLTR-----LSGDISLLINLRTLDISNNKLRYL-PSEIG-----DLIYLRELCLNNNNLR-----TL 111 (157)
Q Consensus 48 ~~~~L~~l~l~~~~~~~-----~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~-----~~~~l~~l~l~~n~l~-----~l 111 (157)
.++.|+.+++++|.++. +...+..+++|+.|++++|.++.. ...+. ..+.|+.+++.+|.++ .+
T Consensus 191 ~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l 270 (319)
T cd00116 191 ANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDL 270 (319)
T ss_pred hCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHH
Confidence 34466666666666542 122234455666777766666531 11111 1256667777776664 22
Q ss_pred chhhcCcCCCcEEEccCCCCCCh
Q psy3049 112 PYELGKLFQIQILGLHGNPLSKD 134 (157)
Q Consensus 112 ~~~~~~~~~L~~l~l~~n~~~~~ 134 (157)
...+..+++|++++++.|.+.+.
T Consensus 271 ~~~~~~~~~L~~l~l~~N~l~~~ 293 (319)
T cd00116 271 AEVLAEKESLLELDLRGNKFGEE 293 (319)
T ss_pred HHHHhcCCCccEEECCCCCCcHH
Confidence 33345556677777777777655
No 30
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.95 E-value=7.9e-10 Score=79.56 Aligned_cols=84 Identities=29% Similarity=0.370 Sum_probs=46.1
Q ss_pred cccceEecccCCCcc-----ccccccccccccEEeccCCCCCC-----CChhhhCccccceEEcCCCcccC-----cchh
Q psy3049 50 THLTALYMNDNNLTR-----LSGDISLLINLRTLDISNNKLRY-----LPSEIGDLIYLRELCLNNNNLRT-----LPYE 114 (157)
Q Consensus 50 ~~L~~l~l~~~~~~~-----~~~~~~~~~~L~~L~l~~~~~~~-----~~~~~~~~~~l~~l~l~~n~l~~-----l~~~ 114 (157)
++|+.+++++|.++. +...+..+.++++|++++|.++. ++..+...++|+++++++|.++. +...
T Consensus 137 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~ 216 (319)
T cd00116 137 PALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAET 216 (319)
T ss_pred CCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHH
Confidence 556666666666651 12233444556666666666551 22334444566666666666552 2233
Q ss_pred hcCcCCCcEEEccCCCCCC
Q psy3049 115 LGKLFQIQILGLHGNPLSK 133 (157)
Q Consensus 115 ~~~~~~L~~l~l~~n~~~~ 133 (157)
+..+++|+++++++|.+.+
T Consensus 217 ~~~~~~L~~L~ls~n~l~~ 235 (319)
T cd00116 217 LASLKSLEVLNLGDNNLTD 235 (319)
T ss_pred hcccCCCCEEecCCCcCch
Confidence 4555666666666666665
No 31
>PLN03150 hypothetical protein; Provisional
Probab=98.94 E-value=4.6e-09 Score=82.22 Aligned_cols=109 Identities=25% Similarity=0.403 Sum_probs=88.1
Q ss_pred CCEEEecCCcceecCccccCCCCCChhhhcCcccceEecccCCCc-cccccccccccccEEeccCCCCC-CCChhhhCcc
Q psy3049 19 LRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLT-RLSGDISLLINLRTLDISNNKLR-YLPSEIGDLI 96 (157)
Q Consensus 19 L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~ 96 (157)
+..|++++|.+.. .+|+.+..+++|+.|++++|.+. .+|..++.+++|+.|++++|.++ .+|..+..++
T Consensus 420 v~~L~L~~n~L~g---------~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~ 490 (623)
T PLN03150 420 IDGLGLDNQGLRG---------FIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLT 490 (623)
T ss_pred EEEEECCCCCccc---------cCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCC
Confidence 5667788877763 13345677889999999999998 57778899999999999999987 6788999999
Q ss_pred ccceEEcCCCccc-CcchhhcCc-CCCcEEEccCCCCCChhH
Q psy3049 97 YLRELCLNNNNLR-TLPYELGKL-FQIQILGLHGNPLSKDYM 136 (157)
Q Consensus 97 ~l~~l~l~~n~l~-~l~~~~~~~-~~L~~l~l~~n~~~~~~~ 136 (157)
+|+.|++++|.++ .+|..++.. .++..+++.+|...+..|
T Consensus 491 ~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p 532 (623)
T PLN03150 491 SLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIP 532 (623)
T ss_pred CCCEEECcCCcccccCChHHhhccccCceEEecCCccccCCC
Confidence 9999999999999 888877653 467788999887544433
No 32
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.93 E-value=4.2e-10 Score=83.52 Aligned_cols=95 Identities=44% Similarity=0.575 Sum_probs=48.4
Q ss_pred CCCCCCccchhhhccc-CCCEEEecCCcceecCccccCCCCCChhhhcCcccceEecccCCCccccccccccccccEEec
Q psy3049 2 NDNNLTRLSGDISLLI-NLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTRLSGDISLLINLRTLDI 80 (157)
Q Consensus 2 ~~n~i~~l~~~~~~l~-~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l 80 (157)
.+|.++.+++...... +|+.|+++.|.+..+|.. +..++.|+.|+++.|++..++...+....++.+++
T Consensus 124 ~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~----------~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~l 193 (394)
T COG4886 124 DNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSP----------LRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDL 193 (394)
T ss_pred CCcccccCccccccchhhcccccccccchhhhhhh----------hhccccccccccCCchhhhhhhhhhhhhhhhheec
Confidence 4566666666655553 666666666666665422 23344555555555555554443334444555555
Q ss_pred cCCCCCCCChhhhCccccceEEcCCC
Q psy3049 81 SNNKLRYLPSEIGDLIYLRELCLNNN 106 (157)
Q Consensus 81 ~~~~~~~~~~~~~~~~~l~~l~l~~n 106 (157)
++|.++.+|........++.+.+++|
T Consensus 194 s~N~i~~l~~~~~~~~~L~~l~~~~N 219 (394)
T COG4886 194 SGNKISDLPPEIELLSALEELDLSNN 219 (394)
T ss_pred cCCccccCchhhhhhhhhhhhhhcCC
Confidence 55555544443323333444444444
No 33
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.91 E-value=2.5e-09 Score=58.54 Aligned_cols=58 Identities=45% Similarity=0.637 Sum_probs=31.7
Q ss_pred CCCEEEecCCcceecCccccCCCCCChhhhcCcccceEecccCCCccccc-cccccccccEEeccCCC
Q psy3049 18 NLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTRLSG-DISLLINLRTLDISNNK 84 (157)
Q Consensus 18 ~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~ 84 (157)
+|+.|++++|+++.+|++. |..+++|+++++++|.++.+++ .+..+++|+++++++|.
T Consensus 2 ~L~~L~l~~n~l~~i~~~~---------f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDS---------FSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTT---------TTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHH---------HcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 4556666666666655432 4455556666666665555432 34555555555555554
No 34
>KOG1259|consensus
Probab=98.86 E-value=6.9e-10 Score=78.18 Aligned_cols=124 Identities=23% Similarity=0.248 Sum_probs=97.3
Q ss_pred hhcccCCCEEEecCCcceecCccccCCCCCChhhhcCcccceEecccCCCccccccccccccccEEeccCCCCCCCChhh
Q psy3049 13 ISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEI 92 (157)
Q Consensus 13 ~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 92 (157)
+..++.|+++|++.|.|+.+.++. --.|.++.|+++.|.+..+. ++..+++|+.|++++|.++....+-
T Consensus 280 ~dTWq~LtelDLS~N~I~~iDESv----------KL~Pkir~L~lS~N~i~~v~-nLa~L~~L~~LDLS~N~Ls~~~Gwh 348 (490)
T KOG1259|consen 280 ADTWQELTELDLSGNLITQIDESV----------KLAPKLRRLILSQNRIRTVQ-NLAELPQLQLLDLSGNLLAECVGWH 348 (490)
T ss_pred cchHhhhhhccccccchhhhhhhh----------hhccceeEEeccccceeeeh-hhhhcccceEeecccchhHhhhhhH
Confidence 345678999999999998876643 23478999999999998765 4788999999999999998777666
Q ss_pred hCccccceEEcCCCcccCcchhhcCcCCCcEEEccCCCCCChh-HHhhcCCCChHHH
Q psy3049 93 GDLIYLRELCLNNNNLRTLPYELGKLFQIQILGLHGNPLSKDY-MKIYNEPNGTQKL 148 (157)
Q Consensus 93 ~~~~~l~~l~l~~n~l~~l~~~~~~~~~L~~l~l~~n~~~~~~-~~~~~~~~~l~~l 148 (157)
..+.+++.|.+++|.+.++.. ++.+-+|.++|+++|.+.... ...++.++.+..+
T Consensus 349 ~KLGNIKtL~La~N~iE~LSG-L~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l 404 (490)
T KOG1259|consen 349 LKLGNIKTLKLAQNKIETLSG-LRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETL 404 (490)
T ss_pred hhhcCEeeeehhhhhHhhhhh-hHhhhhheeccccccchhhHHHhcccccccHHHHH
Confidence 677888999999999887743 688889999999999987442 2345556655554
No 35
>KOG4579|consensus
Probab=98.85 E-value=2e-10 Score=71.96 Aligned_cols=127 Identities=20% Similarity=0.293 Sum_probs=98.1
Q ss_pred CCCCCCccchhhh---cccCCCEEEecCCcceecCccccCCCCCChhhhcCcccceEecccCCCccccccccccccccEE
Q psy3049 2 NDNNLTRLSGDIS---LLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTRLSGDISLLINLRTL 78 (157)
Q Consensus 2 ~~n~i~~l~~~~~---~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L 78 (157)
+.+++-.+++... ....|+..++++|.+.++|+.+ ...++.++.+++++|.+..+|..+..++.|+.+
T Consensus 35 ssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kf---------t~kf~t~t~lNl~~neisdvPeE~Aam~aLr~l 105 (177)
T KOG4579|consen 35 SSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKF---------TIKFPTATTLNLANNEISDVPEELAAMPALRSL 105 (177)
T ss_pred ccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHH---------hhccchhhhhhcchhhhhhchHHHhhhHHhhhc
Confidence 3444444554433 4445667789999999888765 235678999999999999999889999999999
Q ss_pred eccCCCCCCCChhhhCccccceEEcCCCcccCcchhhcCcCCCcEEEccCCCCCChhHH
Q psy3049 79 DISNNKLRYLPSEIGDLIYLRELCLNNNNLRTLPYELGKLFQIQILGLHGNPLSKDYMK 137 (157)
Q Consensus 79 ~l~~~~~~~~~~~~~~~~~l~~l~l~~n~l~~l~~~~~~~~~L~~l~l~~n~~~~~~~~ 137 (157)
++..|.+..+|..+..+.++-.|+..+|....+|-.+.........+++.+++.+..+.
T Consensus 106 Nl~~N~l~~~p~vi~~L~~l~~Lds~~na~~eid~dl~~s~~~al~~lgnepl~~~~~~ 164 (177)
T KOG4579|consen 106 NLRFNPLNAEPRVIAPLIKLDMLDSPENARAEIDVDLFYSSLPALIKLGNEPLGDETKK 164 (177)
T ss_pred ccccCccccchHHHHHHHhHHHhcCCCCccccCcHHHhccccHHHHHhcCCcccccCcc
Confidence 99999999999988888899999999999988886544444455556677788776443
No 36
>KOG4237|consensus
Probab=98.78 E-value=1.2e-09 Score=79.15 Aligned_cols=113 Identities=23% Similarity=0.378 Sum_probs=73.9
Q ss_pred EEecCCcceecCccccCCCCCChhhhcCcccceEecccCCCccccc-cccccccccEEeccCCCCCCC-ChhhhCccccc
Q psy3049 22 LDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTRLSG-DISLLINLRTLDISNNKLRYL-PSEIGDLIYLR 99 (157)
Q Consensus 22 L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~l~ 99 (157)
++-++..++++|.++. +....+++..|+++.+|+ .|+.+.+|+.|++++|.|+++ |.++..++++.
T Consensus 51 VdCr~~GL~eVP~~LP------------~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~ 118 (498)
T KOG4237|consen 51 VDCRGKGLTEVPANLP------------PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLL 118 (498)
T ss_pred EEccCCCcccCcccCC------------CcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhh
Confidence 3445555666655432 235667777777777764 466777777777777777766 55666666655
Q ss_pred eEEc-CCCcccCcchh-hcCcCCCcEEEccCCCCCChhHHhhcCCCChH
Q psy3049 100 ELCL-NNNNLRTLPYE-LGKLFQIQILGLHGNPLSKDYMKIYNEPNGTQ 146 (157)
Q Consensus 100 ~l~l-~~n~l~~l~~~-~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~l~ 146 (157)
.+-+ ++|+|+++|+. |+++..++.+.+..|++.+...+.+.+++.+.
T Consensus 119 ~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~ 167 (498)
T KOG4237|consen 119 SLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLS 167 (498)
T ss_pred HHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcc
Confidence 4433 34777777754 77777777777777777777777776665553
No 37
>KOG1859|consensus
Probab=98.65 E-value=5.8e-10 Score=86.32 Aligned_cols=121 Identities=29% Similarity=0.324 Sum_probs=75.6
Q ss_pred CCCCCCccchhhhcccCCCEEEecCCcceecCccccCCCCCChhhhcCcccceEecccCCCccccccccccccccEEecc
Q psy3049 2 NDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTRLSGDISLLINLRTLDIS 81 (157)
Q Consensus 2 ~~n~i~~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~ 81 (157)
+.|+++.+..++.-++.++.|+++.|.++++. .+..++.|++||++.|.++.+|.--..-.+|+.|.+.
T Consensus 172 syN~L~~mD~SLqll~ale~LnLshNk~~~v~-----------~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~lr 240 (1096)
T KOG1859|consen 172 SYNRLVLMDESLQLLPALESLNLSHNKFTKVD-----------NLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLNLR 240 (1096)
T ss_pred chhhHHhHHHHHHHHHHhhhhccchhhhhhhH-----------HHHhcccccccccccchhccccccchhhhhheeeeec
Confidence 45666666666666777777777777777653 1445667777777777776665432222246777777
Q ss_pred CCCCCCCChhhhCccccceEEcCCCcccCcc--hhhcCcCCCcEEEccCCCCCCh
Q psy3049 82 NNKLRYLPSEIGDLIYLRELCLNNNNLRTLP--YELGKLFQIQILGLHGNPLSKD 134 (157)
Q Consensus 82 ~~~~~~~~~~~~~~~~l~~l~l~~n~l~~l~--~~~~~~~~L~~l~l~~n~~~~~ 134 (157)
+|.++.+. .+.++.+|..||++.|-+.... ..+..+..|..|+|.+|++.+.
T Consensus 241 nN~l~tL~-gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c~ 294 (1096)
T KOG1859|consen 241 NNALTTLR-GIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCCA 294 (1096)
T ss_pred ccHHHhhh-hHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccccC
Confidence 77666542 2445666777777777666332 2245666777777777777654
No 38
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.56 E-value=1.3e-07 Score=48.06 Aligned_cols=37 Identities=43% Similarity=0.638 Sum_probs=23.6
Q ss_pred ccceEEcCCCcccCcchhhcCcCCCcEEEccCCCCCC
Q psy3049 97 YLRELCLNNNNLRTLPYELGKLFQIQILGLHGNPLSK 133 (157)
Q Consensus 97 ~l~~l~l~~n~l~~l~~~~~~~~~L~~l~l~~n~~~~ 133 (157)
+|++|++++|+++++|..+.++++|+++++++|++++
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~ 38 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISD 38 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSB
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCC
Confidence 4566667777777666666677777777777776664
No 39
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.49 E-value=2e-07 Score=47.35 Aligned_cols=38 Identities=42% Similarity=0.660 Sum_probs=19.1
Q ss_pred cccEEeccCCCCCCCChhhhCccccceEEcCCCcccCc
Q psy3049 74 NLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLRTL 111 (157)
Q Consensus 74 ~L~~L~l~~~~~~~~~~~~~~~~~l~~l~l~~n~l~~l 111 (157)
+|++|++++|.++.+|..+..+++|+.+++++|+++++
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i 39 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDI 39 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBE
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCC
Confidence 34555555555555544455555555555555555544
No 40
>KOG4658|consensus
Probab=98.46 E-value=1.4e-07 Score=76.30 Aligned_cols=83 Identities=30% Similarity=0.422 Sum_probs=51.8
Q ss_pred hhcCcccceEecccC-CCccccccccccccccEEeccCCCCCCCChhhhCccccceEEcCCCccc-CcchhhcCcCCCcE
Q psy3049 46 LWQFTHLTALYMNDN-NLTRLSGDISLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLR-TLPYELGKLFQIQI 123 (157)
Q Consensus 46 ~~~~~~L~~l~l~~~-~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~l~~n~l~-~l~~~~~~~~~L~~ 123 (157)
|..++.|.+|++++| .+.++|..++.+-+|++|++.++.++.+|..+..+..|.+|++..+.-. .+|.....+++|++
T Consensus 567 f~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~ 646 (889)
T KOG4658|consen 567 FRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRV 646 (889)
T ss_pred HhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheeccccccccccccchhhhcccccE
Confidence 445666777777665 3446666666666777777777766666776666667777766665433 33444455666666
Q ss_pred EEccC
Q psy3049 124 LGLHG 128 (157)
Q Consensus 124 l~l~~ 128 (157)
+.+..
T Consensus 647 L~l~~ 651 (889)
T KOG4658|consen 647 LRLPR 651 (889)
T ss_pred EEeec
Confidence 66644
No 41
>KOG4658|consensus
Probab=98.41 E-value=1.5e-07 Score=76.00 Aligned_cols=121 Identities=31% Similarity=0.393 Sum_probs=95.7
Q ss_pred cCCCEEEecCCcceecCccccCCCCCChhhhcCcccceEecccCC--Ccccc-ccccccccccEEeccCC-CCCCCChhh
Q psy3049 17 INLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNN--LTRLS-GDISLLINLRTLDISNN-KLRYLPSEI 92 (157)
Q Consensus 17 ~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~--~~~~~-~~~~~~~~L~~L~l~~~-~~~~~~~~~ 92 (157)
...+...+.+|.+..++... ..+.+++|-+.+|. +..++ ..|..++.|..||+++| .++.+|..+
T Consensus 523 ~~~rr~s~~~~~~~~~~~~~-----------~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I 591 (889)
T KOG4658|consen 523 NSVRRMSLMNNKIEHIAGSS-----------ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSI 591 (889)
T ss_pred hheeEEEEeccchhhccCCC-----------CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHH
Confidence 34555566666665554432 33468888888886 45554 34778999999999988 667999999
Q ss_pred hCccccceEEcCCCcccCcchhhcCcCCCcEEEccCCCCCChhHHhhcCCCChHHH
Q psy3049 93 GDLIYLRELCLNNNNLRTLPYELGKLFQIQILGLHGNPLSKDYMKIYNEPNGTQKL 148 (157)
Q Consensus 93 ~~~~~l~~l~l~~n~l~~l~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~l~~l 148 (157)
+.+-+|++|+++++.++.+|..++++..|.+|++..+.....++.+...+.+|+.+
T Consensus 592 ~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L 647 (889)
T KOG4658|consen 592 GELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVL 647 (889)
T ss_pred hhhhhhhcccccCCCccccchHHHHHHhhheeccccccccccccchhhhcccccEE
Confidence 99999999999999999999999999999999999887666667777777777765
No 42
>KOG3207|consensus
Probab=98.36 E-value=1.8e-07 Score=68.86 Aligned_cols=121 Identities=26% Similarity=0.364 Sum_probs=78.2
Q ss_pred hcccCCCEEEecCCcceecCc-----cccCCCCC------------ChhhhcCcccceEecccCC-Cccccccccccccc
Q psy3049 14 SLLINLRTLDISNNKLRYLPS-----EIGAVKNL------------SPDLWQFTHLTALYMNDNN-LTRLSGDISLLINL 75 (157)
Q Consensus 14 ~~l~~L~~L~l~~~~l~~~~~-----~~~~~~~~------------~~~~~~~~~L~~l~l~~~~-~~~~~~~~~~~~~L 75 (157)
..+++|+.|+++.|.+.-.-+ .+++++.+ -.-...+|++..|++..|. +.........+..|
T Consensus 169 eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L 248 (505)
T KOG3207|consen 169 EQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTL 248 (505)
T ss_pred HhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHH
Confidence 456677777777776642111 22222211 1123356777788887774 22212223456678
Q ss_pred cEEeccCCCCCCCC--hhhhCccccceEEcCCCcccCc--chh-----hcCcCCCcEEEccCCCCCCh
Q psy3049 76 RTLDISNNKLRYLP--SEIGDLIYLRELCLNNNNLRTL--PYE-----LGKLFQIQILGLHGNPLSKD 134 (157)
Q Consensus 76 ~~L~l~~~~~~~~~--~~~~~~~~l~~l~l~~n~l~~l--~~~-----~~~~~~L~~l~l~~n~~~~~ 134 (157)
+.|++++|.+-.++ .....++.|..++++.|++.++ |+. ...+++|++|++..|++.+.
T Consensus 249 ~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w 316 (505)
T KOG3207|consen 249 QELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDW 316 (505)
T ss_pred hhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccc
Confidence 99999999877665 4677889999999999999854 443 35678999999999998543
No 43
>KOG0531|consensus
Probab=98.34 E-value=1.3e-07 Score=70.79 Aligned_cols=117 Identities=26% Similarity=0.412 Sum_probs=65.2
Q ss_pred CCCCccchhhhcccCCCEEEecCCcceecCccccCCCCCChhhhcCcccceEecccCCCccccccccccccccEEeccCC
Q psy3049 4 NNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTRLSGDISLLINLRTLDISNN 83 (157)
Q Consensus 4 n~i~~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~ 83 (157)
|.|..+-..+..+.++..+++..|.+.++... +..+++|+++++++|.++.+. .+..+..|+.|++.+|
T Consensus 82 n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~----------l~~~~~L~~L~ls~N~I~~i~-~l~~l~~L~~L~l~~N 150 (414)
T KOG0531|consen 82 NLIAKILNHLSKLKSLEALDLYDNKIEKIENL----------LSSLVNLQVLDLSFNKITKLE-GLSTLTLLKELNLSGN 150 (414)
T ss_pred hhhhhhhcccccccceeeeeccccchhhcccc----------hhhhhcchheecccccccccc-chhhccchhhheeccC
Confidence 34444333355566666666666666655432 224556666666666666543 2344445666666666
Q ss_pred CCCCCChhhhCccccceEEcCCCcccCcchh-hcCcCCCcEEEccCCCCC
Q psy3049 84 KLRYLPSEIGDLIYLRELCLNNNNLRTLPYE-LGKLFQIQILGLHGNPLS 132 (157)
Q Consensus 84 ~~~~~~~~~~~~~~l~~l~l~~n~l~~l~~~-~~~~~~L~~l~l~~n~~~ 132 (157)
.++.+.. +..+..++.+++++|.+..+... ...+..+..+++.+|.+.
T Consensus 151 ~i~~~~~-~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~ 199 (414)
T KOG0531|consen 151 LISDISG-LESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNSIR 199 (414)
T ss_pred cchhccC-CccchhhhcccCCcchhhhhhhhhhhhccchHHHhccCCchh
Confidence 6664432 22255666666666666655442 355566666666666554
No 44
>KOG1859|consensus
Probab=98.30 E-value=2.1e-08 Score=78.02 Aligned_cols=105 Identities=31% Similarity=0.329 Sum_probs=82.1
Q ss_pred CCCEEEecCCcceecCccccCCCCCChhhhcCcccceEecccCCCccccccccccccccEEeccCCCCCCCChhhhCccc
Q psy3049 18 NLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGDLIY 97 (157)
Q Consensus 18 ~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 97 (157)
.|...+++.|.+..+.. ++.-++.++.|++++|+++++. .+..+++|++||++.|.++.+|.--..-..
T Consensus 165 ~L~~a~fsyN~L~~mD~----------SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~ 233 (1096)
T KOG1859|consen 165 KLATASFSYNRLVLMDE----------SLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK 233 (1096)
T ss_pred hHhhhhcchhhHHhHHH----------HHHHHHHhhhhccchhhhhhhH-HHHhcccccccccccchhccccccchhhhh
Confidence 35555666666654433 4556788999999999999876 778899999999999999988763333344
Q ss_pred cceEEcCCCcccCcchhhcCcCCCcEEEccCCCCCCh
Q psy3049 98 LRELCLNNNNLRTLPYELGKLFQIQILGLHGNPLSKD 134 (157)
Q Consensus 98 l~~l~l~~n~l~~l~~~~~~~~~L~~l~l~~n~~~~~ 134 (157)
|..|.+++|.++++.. +.++.+|..||++.|-+.+.
T Consensus 234 L~~L~lrnN~l~tL~g-ie~LksL~~LDlsyNll~~h 269 (1096)
T KOG1859|consen 234 LQLLNLRNNALTTLRG-IENLKSLYGLDLSYNLLSEH 269 (1096)
T ss_pred heeeeecccHHHhhhh-HHhhhhhhccchhHhhhhcc
Confidence 8999999999988754 68999999999999988765
No 45
>KOG1644|consensus
Probab=98.23 E-value=2.8e-06 Score=56.81 Aligned_cols=83 Identities=29% Similarity=0.371 Sum_probs=58.8
Q ss_pred hhcCcccceEecccCCCcccccccc-ccccccEEeccCCCCCCCC--hhhhCccccceEEcCCCcccCcchh----hcCc
Q psy3049 46 LWQFTHLTALYMNDNNLTRLSGDIS-LLINLRTLDISNNKLRYLP--SEIGDLIYLRELCLNNNNLRTLPYE----LGKL 118 (157)
Q Consensus 46 ~~~~~~L~~l~l~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~--~~~~~~~~l~~l~l~~n~l~~l~~~----~~~~ 118 (157)
+..++.|.+|.+.+|.++.+.+.+. .++.+..|.+++|++..+. ..+..++.|++|.+-+|.++..+.- +..+
T Consensus 60 lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~kl 139 (233)
T KOG1644|consen 60 LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKL 139 (233)
T ss_pred CCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecCCchhcccCceeEEEEec
Confidence 4466778888888888887766654 3456888888888877553 2456677888888888877754422 5677
Q ss_pred CCCcEEEccC
Q psy3049 119 FQIQILGLHG 128 (157)
Q Consensus 119 ~~L~~l~l~~ 128 (157)
|+|+.+|...
T Consensus 140 p~l~~LDF~k 149 (233)
T KOG1644|consen 140 PSLRTLDFQK 149 (233)
T ss_pred CcceEeehhh
Confidence 8888888764
No 46
>KOG0531|consensus
Probab=98.23 E-value=2.3e-07 Score=69.57 Aligned_cols=99 Identities=32% Similarity=0.515 Sum_probs=76.0
Q ss_pred CCCCCCCccchhhhcccCCCEEEecCCcceecCccccCCCCCChhhhcCcccceEecccCCCccccccccccccccEEec
Q psy3049 1 MNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTRLSGDISLLINLRTLDI 80 (157)
Q Consensus 1 l~~n~i~~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l 80 (157)
+.+|.|..+...+..+.+|++|+++.|.|+++.. +..++.|+.|++.+|.++.+. .+..+..++.+++
T Consensus 102 l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~-----------l~~l~~L~~L~l~~N~i~~~~-~~~~l~~L~~l~l 169 (414)
T KOG0531|consen 102 LYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEG-----------LSTLTLLKELNLSGNLISDIS-GLESLKSLKLLDL 169 (414)
T ss_pred ccccchhhcccchhhhhcchheeccccccccccc-----------hhhccchhhheeccCcchhcc-CCccchhhhcccC
Confidence 4678888887668889999999999999997643 445666899999999998764 3445788889999
Q ss_pred cCCCCCCCChh-hhCccccceEEcCCCcccCc
Q psy3049 81 SNNKLRYLPSE-IGDLIYLRELCLNNNNLRTL 111 (157)
Q Consensus 81 ~~~~~~~~~~~-~~~~~~l~~l~l~~n~l~~l 111 (157)
++|.++.+... ...+..++.+.+++|.+..+
T Consensus 170 ~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~~i 201 (414)
T KOG0531|consen 170 SYNRIVDIENDELSELISLEELDLGGNSIREI 201 (414)
T ss_pred CcchhhhhhhhhhhhccchHHHhccCCchhcc
Confidence 99988866542 35567777777777766644
No 47
>KOG3207|consensus
Probab=98.08 E-value=5.7e-07 Score=66.27 Aligned_cols=114 Identities=25% Similarity=0.291 Sum_probs=63.0
Q ss_pred hhhcccCCCEEEecCCcceecCccccCCCCCChhhhcCcccceEecccCCCccc--------------------------
Q psy3049 12 DISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTRL-------------------------- 65 (157)
Q Consensus 12 ~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~-------------------------- 65 (157)
....|++++.||++.|=+..+.+-.. -...+++|+.|+++.|.+...
T Consensus 141 ~~k~~~~v~~LdLS~NL~~nw~~v~~-------i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~ 213 (505)
T KOG3207|consen 141 YSKILPNVRDLDLSRNLFHNWFPVLK-------IAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKD 213 (505)
T ss_pred hhhhCCcceeecchhhhHHhHHHHHH-------HHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHH
Confidence 46779999999999997764332110 112344555555555544321
Q ss_pred -cccccccccccEEeccCCC-CCCCChhhhCccccceEEcCCCcccCcc--hhhcCcCCCcEEEccCCCCC
Q psy3049 66 -SGDISLLINLRTLDISNNK-LRYLPSEIGDLIYLRELCLNNNNLRTLP--YELGKLFQIQILGLHGNPLS 132 (157)
Q Consensus 66 -~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~l~~l~l~~n~l~~l~--~~~~~~~~L~~l~l~~n~~~ 132 (157)
......+++++.|++..|. +.........+..|+.|++++|++-+.+ ...+.++.|..++++.+.+.
T Consensus 214 V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~ 284 (505)
T KOG3207|consen 214 VQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIA 284 (505)
T ss_pred HHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhccccCcc
Confidence 1122334555555555552 2211111222356677777777777665 33677777777777777665
No 48
>KOG1644|consensus
Probab=98.07 E-value=6.5e-06 Score=55.13 Aligned_cols=96 Identities=22% Similarity=0.345 Sum_probs=73.3
Q ss_pred CCCCCCCccchhhhcccCCCEEEecCCcceecCccccCCCCCChhhhcCcccceEecccCCCcccc--ccccccccccEE
Q psy3049 1 MNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTRLS--GDISLLINLRTL 78 (157)
Q Consensus 1 l~~n~i~~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~--~~~~~~~~L~~L 78 (157)
|++|.+..++ .|..++.|.+|.+.+|+|+.+.+.+.. -++.++.|.+.+|++..+. ..+..+++|++|
T Consensus 49 LtdNdl~~l~-~lp~l~rL~tLll~nNrIt~I~p~L~~---------~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~L 118 (233)
T KOG1644|consen 49 LTDNDLRKLD-NLPHLPRLHTLLLNNNRITRIDPDLDT---------FLPNLKTLILTNNSIQELGDLDPLASCPKLEYL 118 (233)
T ss_pred ccccchhhcc-cCCCccccceEEecCCcceeeccchhh---------hccccceEEecCcchhhhhhcchhccCCcccee
Confidence 4566666653 477888999999999999998887532 3467999999999998653 345678899999
Q ss_pred eccCCCCCCCC----hhhhCccccceEEcCCC
Q psy3049 79 DISNNKLRYLP----SEIGDLIYLRELCLNNN 106 (157)
Q Consensus 79 ~l~~~~~~~~~----~~~~~~~~l~~l~l~~n 106 (157)
.+-+|.++... -.+..+++++.+|+..-
T Consensus 119 tll~Npv~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 119 TLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred eecCCchhcccCceeEEEEecCcceEeehhhh
Confidence 99999887332 24678899999988654
No 49
>KOG1909|consensus
Probab=97.97 E-value=9.8e-07 Score=63.30 Aligned_cols=64 Identities=25% Similarity=0.353 Sum_probs=28.7
Q ss_pred ccccccccEEeccCCCCC-----CCChhhhCccccceEEcCCCcccC-----cchhh-cCcCCCcEEEccCCCCC
Q psy3049 69 ISLLINLRTLDISNNKLR-----YLPSEIGDLIYLRELCLNNNNLRT-----LPYEL-GKLFQIQILGLHGNPLS 132 (157)
Q Consensus 69 ~~~~~~L~~L~l~~~~~~-----~~~~~~~~~~~l~~l~l~~n~l~~-----l~~~~-~~~~~L~~l~l~~n~~~ 132 (157)
+..+++|+.|++.+|.++ .+...+..+++|+.+++++|.++. +-..+ ...|+|+.+.+.+|.++
T Consensus 209 l~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt 283 (382)
T KOG1909|consen 209 LEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEIT 283 (382)
T ss_pred HHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhH
Confidence 344455555555555444 122334444455555555554441 11111 22445555555555554
No 50
>KOG1909|consensus
Probab=97.75 E-value=1.4e-05 Score=57.59 Aligned_cols=88 Identities=26% Similarity=0.329 Sum_probs=54.4
Q ss_pred hhhcCcccceEecccCCCcc-----ccccccccccccEEeccCCCCCC-----CChhhh-CccccceEEcCCCccc----
Q psy3049 45 DLWQFTHLTALYMNDNNLTR-----LSGDISLLINLRTLDISNNKLRY-----LPSEIG-DLIYLRELCLNNNNLR---- 109 (157)
Q Consensus 45 ~~~~~~~L~~l~l~~~~~~~-----~~~~~~~~~~L~~L~l~~~~~~~-----~~~~~~-~~~~l~~l~l~~n~l~---- 109 (157)
.+..+++|+.|++++|.++. +...++.+++|+.+++++|.++. +...+. ..++|+.+.+.+|.++
T Consensus 208 al~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~ 287 (382)
T KOG1909|consen 208 ALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAA 287 (382)
T ss_pred HHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHH
Confidence 34556777777777777762 23345666677777777776651 222222 2467777777777766
Q ss_pred -CcchhhcCcCCCcEEEccCCCCC
Q psy3049 110 -TLPYELGKLFQIQILGLHGNPLS 132 (157)
Q Consensus 110 -~l~~~~~~~~~L~~l~l~~n~~~ 132 (157)
.+...+...+.|..|+|+.|.+.
T Consensus 288 ~~la~~~~ek~dL~kLnLngN~l~ 311 (382)
T KOG1909|consen 288 LALAACMAEKPDLEKLNLNGNRLG 311 (382)
T ss_pred HHHHHHHhcchhhHHhcCCccccc
Confidence 22333555677777777777773
No 51
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.67 E-value=0.00034 Score=43.60 Aligned_cols=122 Identities=12% Similarity=0.245 Sum_probs=65.8
Q ss_pred cchh-hhcccCCCEEEecCCcceecCccccCCCCCChhhhcCcccceEecccCCCcccc-ccccccccccEEeccCCCCC
Q psy3049 9 LSGD-ISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTRLS-GDISLLINLRTLDISNNKLR 86 (157)
Q Consensus 9 l~~~-~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~ 86 (157)
++.. |.++.+|+.+.+.. .+..+++.. |..+..++.+.+..+ +..+. ..+..+.+++.+.+.+ .+.
T Consensus 3 i~~~~F~~~~~l~~i~~~~-~~~~I~~~~---------F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~ 70 (129)
T PF13306_consen 3 IGNNAFYNCSNLESITFPN-TIKKIGENA---------FSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLK 70 (129)
T ss_dssp E-TTTTTT-TT--EEEETS-T--EE-TTT---------TTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-
T ss_pred ECHHHHhCCCCCCEEEECC-CeeEeChhh---------ccccccccccccccc-ccccceeeeecccccccccccc-ccc
Confidence 4433 78888999999985 577777653 666778999999875 66654 3466777899999976 455
Q ss_pred CCCh-hhhCccccceEEcCCCcccCcchh-hcCcCCCcEEEccCCCCCChhHHhhcCCCCh
Q psy3049 87 YLPS-EIGDLIYLRELCLNNNNLRTLPYE-LGKLFQIQILGLHGNPLSKDYMKIYNEPNGT 145 (157)
Q Consensus 87 ~~~~-~~~~~~~l~~l~l~~n~l~~l~~~-~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~l 145 (157)
.++. .+..++.++.+.+..+ +..++.. +.+. .++.+.+.. .+.......|.++..|
T Consensus 71 ~i~~~~F~~~~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 71 SIGDNAFSNCTNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKL 128 (129)
T ss_dssp EE-TTTTTT-TTECEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG-----
T ss_pred ccccccccccccccccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccC
Confidence 4543 5666899999999775 7777654 5665 899998876 4555566777766555
No 52
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.60 E-value=0.0004 Score=51.88 Aligned_cols=105 Identities=21% Similarity=0.284 Sum_probs=57.4
Q ss_pred hcccCCCEEEecCCcceecCcccc------------CCCCCChhhhcCcccceEecccC-CCccccccccccccccEEec
Q psy3049 14 SLLINLRTLDISNNKLRYLPSEIG------------AVKNLSPDLWQFTHLTALYMNDN-NLTRLSGDISLLINLRTLDI 80 (157)
Q Consensus 14 ~~l~~L~~L~l~~~~l~~~~~~~~------------~~~~~~~~~~~~~~L~~l~l~~~-~~~~~~~~~~~~~~L~~L~l 80 (157)
..+.+++.|++++|.+..+|. +. .+..+|..+ .++|+.|.+.+| .+..+|.. |+.|++
T Consensus 49 ~~~~~l~~L~Is~c~L~sLP~-LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~s------Le~L~L 119 (426)
T PRK15386 49 EEARASGRLYIKDCDIESLPV-LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPES------VRSLEI 119 (426)
T ss_pred HHhcCCCEEEeCCCCCcccCC-CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccccccc------cceEEe
Confidence 457788999999988887662 21 111223222 135777777776 44444432 444444
Q ss_pred cCCC---CCCCChhhhCc------------------cccceEEcCCCcccCcchhhcCcCCCcEEEccCC
Q psy3049 81 SNNK---LRYLPSEIGDL------------------IYLRELCLNNNNLRTLPYELGKLFQIQILGLHGN 129 (157)
Q Consensus 81 ~~~~---~~~~~~~~~~~------------------~~l~~l~l~~n~l~~l~~~~~~~~~L~~l~l~~n 129 (157)
..+. +..+|..+..+ ++|++|++++|....+|..+. .+|++|+++.+
T Consensus 120 ~~n~~~~L~~LPssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i~LP~~LP--~SLk~L~ls~n 187 (426)
T PRK15386 120 KGSATDSIKNVPNGLTSLSINSYNPENQARIDNLISPSLKTLSLTGCSNIILPEKLP--ESLQSITLHIE 187 (426)
T ss_pred CCCCCcccccCcchHhheeccccccccccccccccCCcccEEEecCCCcccCccccc--ccCcEEEeccc
Confidence 4433 33445443222 356777777776555554322 46777776654
No 53
>KOG3665|consensus
Probab=97.56 E-value=4.3e-05 Score=60.77 Aligned_cols=103 Identities=19% Similarity=0.245 Sum_probs=64.9
Q ss_pred cCcccceEecccCCCccccccccccccccEEeccCCCCCCCC--hhhhCccccceEEcCCCcccCcchh-------hcCc
Q psy3049 48 QFTHLTALYMNDNNLTRLSGDISLLINLRTLDISNNKLRYLP--SEIGDLIYLRELCLNNNNLRTLPYE-------LGKL 118 (157)
Q Consensus 48 ~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~~l~~l~l~~n~l~~l~~~-------~~~~ 118 (157)
++++|..||+++++++.+ ...+.+.+|+.|.+.+=.+.... ..++.+.+|++||++.......+.. -..+
T Consensus 171 sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~L 249 (699)
T KOG3665|consen 171 SFPNLRSLDISGTNISNL-SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVL 249 (699)
T ss_pred ccCccceeecCCCCccCc-HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccC
Confidence 567777777777777765 34556667777766555554332 2567788888888887655533321 2347
Q ss_pred CCCcEEEccCCCCCChhHHhhc-CCCChHHHHHH
Q psy3049 119 FQIQILGLHGNPLSKDYMKIYN-EPNGTQKLLSY 151 (157)
Q Consensus 119 ~~L~~l~l~~n~~~~~~~~~~~-~~~~l~~l~~~ 151 (157)
|.|+.+|.+++.+.+...+.+- .=++++++..+
T Consensus 250 peLrfLDcSgTdi~~~~le~ll~sH~~L~~i~~~ 283 (699)
T KOG3665|consen 250 PELRFLDCSGTDINEEILEELLNSHPNLQQIAAL 283 (699)
T ss_pred ccccEEecCCcchhHHHHHHHHHhCccHhhhhhh
Confidence 7888888888887766555543 33455555433
No 54
>KOG2739|consensus
Probab=97.56 E-value=6.4e-05 Score=52.12 Aligned_cols=79 Identities=25% Similarity=0.326 Sum_probs=35.4
Q ss_pred ccceEecccCCCccccccccccccccEEeccCC--CCC-CCChhhhCccccceEEcCCCcccCcc--hhhcCcCCCcEEE
Q psy3049 51 HLTALYMNDNNLTRLSGDISLLINLRTLDISNN--KLR-YLPSEIGDLIYLRELCLNNNNLRTLP--YELGKLFQIQILG 125 (157)
Q Consensus 51 ~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~--~~~-~~~~~~~~~~~l~~l~l~~n~l~~l~--~~~~~~~~L~~l~ 125 (157)
.++.+++.+..++.+. .+..+++|++|.++.| +++ .++-....+++++++++++|+++.+. .....+.+|..++
T Consensus 44 ~le~ls~~n~gltt~~-~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ld 122 (260)
T KOG2739|consen 44 ELELLSVINVGLTTLT-NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLD 122 (260)
T ss_pred chhhhhhhccceeecc-cCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhh
Confidence 3444444444444332 2334555555555555 222 22222223355555555555555322 1234444555555
Q ss_pred ccCCC
Q psy3049 126 LHGNP 130 (157)
Q Consensus 126 l~~n~ 130 (157)
+..++
T Consensus 123 l~n~~ 127 (260)
T KOG2739|consen 123 LFNCS 127 (260)
T ss_pred cccCC
Confidence 55543
No 55
>KOG2739|consensus
Probab=97.47 E-value=0.00011 Score=51.05 Aligned_cols=102 Identities=25% Similarity=0.239 Sum_probs=68.7
Q ss_pred cccCCCEEEecCCcceecCccccCCCCCChhhhcCcccceEecccCCCc---cccccccccccccEEeccCCCCCCC--C
Q psy3049 15 LLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLT---RLSGDISLLINLRTLDISNNKLRYL--P 89 (157)
Q Consensus 15 ~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~---~~~~~~~~~~~L~~L~l~~~~~~~~--~ 89 (157)
.+..++.+.+.+..++.+. .+..+++|+.|.++.|... .+..-.-.+++|+++++++|.+..+ -
T Consensus 41 ~~~~le~ls~~n~gltt~~-----------~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl 109 (260)
T KOG2739|consen 41 EFVELELLSVINVGLTTLT-----------NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTL 109 (260)
T ss_pred cccchhhhhhhccceeecc-----------cCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccccccc
Confidence 3445555556665555431 2446789999999999443 2333344568999999999988743 2
Q ss_pred hhhhCccccceEEcCCCcccCcc----hhhcCcCCCcEEEcc
Q psy3049 90 SEIGDLIYLRELCLNNNNLRTLP----YELGKLFQIQILGLH 127 (157)
Q Consensus 90 ~~~~~~~~l~~l~l~~n~l~~l~----~~~~~~~~L~~l~l~ 127 (157)
..+..+.+|..|++..|..+.+. ..+.-+++|++++-.
T Consensus 110 ~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~ 151 (260)
T KOG2739|consen 110 RPLKELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGC 151 (260)
T ss_pred chhhhhcchhhhhcccCCccccccHHHHHHHHhhhhcccccc
Confidence 24556778889999998777543 226778888888754
No 56
>KOG3665|consensus
Probab=97.42 E-value=0.00024 Score=56.63 Aligned_cols=107 Identities=27% Similarity=0.343 Sum_probs=68.7
Q ss_pred ccCCCEEEecCCcce--ecCccccCCCCCChhhhcCcccceEecccCCCcc--ccccccccccccEEeccCCCCCCCChh
Q psy3049 16 LINLRTLDISNNKLR--YLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTR--LSGDISLLINLRTLDISNNKLRYLPSE 91 (157)
Q Consensus 16 l~~L~~L~l~~~~l~--~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~~ 91 (157)
-.+|+.|++++...- ..+..+ -.-+|+|+.|.+.+-.+.. +..-...+++|..||++++.++.+ .+
T Consensus 121 r~nL~~LdI~G~~~~s~~W~~ki---------g~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~G 190 (699)
T KOG3665|consen 121 RQNLQHLDISGSELFSNGWPKKI---------GTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SG 190 (699)
T ss_pred HHhhhhcCccccchhhccHHHHH---------hhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HH
Confidence 346777788775432 222221 1235778888887776652 223345677888888888887766 66
Q ss_pred hhCccccceEEcCCCcccCcc--hhhcCcCCCcEEEccCCCCC
Q psy3049 92 IGDLIYLRELCLNNNNLRTLP--YELGKLFQIQILGLHGNPLS 132 (157)
Q Consensus 92 ~~~~~~l~~l~l~~n~l~~l~--~~~~~~~~L~~l~l~~n~~~ 132 (157)
+..+.+|+.|.+.+=.+..-. ..+.++.+|+.||++.....
T Consensus 191 IS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~ 233 (699)
T KOG3665|consen 191 ISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNN 233 (699)
T ss_pred HhccccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccc
Confidence 777788888877776666432 34677888888888776544
No 57
>KOG2123|consensus
Probab=97.41 E-value=1.6e-05 Score=55.97 Aligned_cols=83 Identities=25% Similarity=0.261 Sum_probs=50.4
Q ss_pred ccceEecccCCCccccccccccccccEEeccCCCCCCCChhhhCccccceEEcCCCcccCcchh--hcCcCCCcEEEccC
Q psy3049 51 HLTALYMNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLRTLPYE--LGKLFQIQILGLHG 128 (157)
Q Consensus 51 ~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~l~~n~l~~l~~~--~~~~~~L~~l~l~~ 128 (157)
+.+.|+.-+|.++.+. ...+|+.|+.|.|+-|.|+.+.. +..|..|++|.|+.|.|.++... +.++|+|+.|+|..
T Consensus 20 ~vkKLNcwg~~L~DIs-ic~kMp~lEVLsLSvNkIssL~p-l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~E 97 (388)
T KOG2123|consen 20 NVKKLNCWGCGLDDIS-ICEKMPLLEVLSLSVNKISSLAP-LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDE 97 (388)
T ss_pred HhhhhcccCCCccHHH-HHHhcccceeEEeeccccccchh-HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhcc
Confidence 3444555555554431 23456666666666666665532 44567777777777777766533 66777777777777
Q ss_pred CCCCChh
Q psy3049 129 NPLSKDY 135 (157)
Q Consensus 129 n~~~~~~ 135 (157)
|+-++..
T Consensus 98 NPCc~~a 104 (388)
T KOG2123|consen 98 NPCCGEA 104 (388)
T ss_pred CCccccc
Confidence 7766553
No 58
>KOG2982|consensus
Probab=97.26 E-value=0.0001 Score=52.47 Aligned_cols=87 Identities=28% Similarity=0.322 Sum_probs=54.4
Q ss_pred ccCCCEEEecCCcceecCccccCCCCCChhhhcCcccceEecccCCCccccccc-cccccccEEeccCCCCC--CCChhh
Q psy3049 16 LINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTRLSGDI-SLLINLRTLDISNNKLR--YLPSEI 92 (157)
Q Consensus 16 l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~--~~~~~~ 92 (157)
++.++.+|+.+|.++++.+-.+ -+..+|++++|+++.|++....... ....+++.+.+.++.+. .....+
T Consensus 70 ~~~v~elDL~~N~iSdWseI~~-------ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l 142 (418)
T KOG2982|consen 70 VTDVKELDLTGNLISDWSEIGA-------ILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSL 142 (418)
T ss_pred hhhhhhhhcccchhccHHHHHH-------HHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhh
Confidence 5567777888887776544221 2345677888888888776433333 24557777777776554 334455
Q ss_pred hCccccceEEcCCCccc
Q psy3049 93 GDLIYLRELCLNNNNLR 109 (157)
Q Consensus 93 ~~~~~l~~l~l~~n~l~ 109 (157)
..+|.++++.++.|.+.
T Consensus 143 ~~lP~vtelHmS~N~~r 159 (418)
T KOG2982|consen 143 DDLPKVTELHMSDNSLR 159 (418)
T ss_pred hcchhhhhhhhccchhh
Confidence 66677777777776444
No 59
>KOG0473|consensus
Probab=97.02 E-value=2.1e-05 Score=54.00 Aligned_cols=95 Identities=20% Similarity=0.251 Sum_probs=80.0
Q ss_pred hhcCcccceEecccCCCccccccccccccccEEeccCCCCCCCChhhhCccccceEEcCCCcccCcchhhcCcCCCcEEE
Q psy3049 46 LWQFTHLTALYMNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLRTLPYELGKLFQIQILG 125 (157)
Q Consensus 46 ~~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~l~~n~l~~l~~~~~~~~~L~~l~ 125 (157)
+..+...+.+|++.|.+..+...++.++.+..++++.|.+...|........+.++++-.|..+..|..++..+.+++.+
T Consensus 38 i~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~e 117 (326)
T KOG0473|consen 38 IASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKKNE 117 (326)
T ss_pred hhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCccccccCCcchhh
Confidence 44566788899999998887778888888999999999999899988888888889988999999999999999999999
Q ss_pred ccCCCCCChhHHhhc
Q psy3049 126 LHGNPLSKDYMKIYN 140 (157)
Q Consensus 126 l~~n~~~~~~~~~~~ 140 (157)
+..|++.........
T Consensus 118 ~k~~~~~~~~~~~v~ 132 (326)
T KOG0473|consen 118 QKKTEFFRKLFGFVW 132 (326)
T ss_pred hccCcchHHHHhHhh
Confidence 999997755444433
No 60
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.99 E-value=0.00055 Score=29.13 Aligned_cols=19 Identities=47% Similarity=0.714 Sum_probs=13.4
Q ss_pred CCCEEEecCCcceecCccc
Q psy3049 18 NLRTLDISNNKLRYLPSEI 36 (157)
Q Consensus 18 ~L~~L~l~~~~l~~~~~~~ 36 (157)
+|++|++++|+++.+|+++
T Consensus 1 ~L~~Ldls~n~l~~ip~~~ 19 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSF 19 (22)
T ss_dssp TESEEEETSSEESEEGTTT
T ss_pred CccEEECCCCcCEeCChhh
Confidence 4677777777777777654
No 61
>KOG2120|consensus
Probab=96.92 E-value=3.6e-05 Score=54.75 Aligned_cols=59 Identities=27% Similarity=0.289 Sum_probs=33.0
Q ss_pred ccccccEEeccCC-CCC-CCChhhhCccccceEEcCCCcccCcch---hhcCcCCCcEEEccCCC
Q psy3049 71 LLINLRTLDISNN-KLR-YLPSEIGDLIYLRELCLNNNNLRTLPY---ELGKLFQIQILGLHGNP 130 (157)
Q Consensus 71 ~~~~L~~L~l~~~-~~~-~~~~~~~~~~~l~~l~l~~n~l~~l~~---~~~~~~~L~~l~l~~n~ 130 (157)
+++.+.+||++++ .++ .....+..++.|+++.+++|- .-+|. ++...|++.+|++.+.-
T Consensus 311 rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY-~i~p~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 311 RCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCY-DIIPETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred hCCceeeeccccccccCchHHHHHHhcchheeeehhhhc-CCChHHeeeeccCcceEEEEecccc
Confidence 3556666666665 343 223345566667777766662 11121 25666777777766543
No 62
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.92 E-value=0.00048 Score=29.29 Aligned_cols=19 Identities=37% Similarity=0.558 Sum_probs=11.6
Q ss_pred cceEEcCCCcccCcchhhc
Q psy3049 98 LRELCLNNNNLRTLPYELG 116 (157)
Q Consensus 98 l~~l~l~~n~l~~l~~~~~ 116 (157)
|++|++++|+++.+|..++
T Consensus 2 L~~Ldls~n~l~~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSSFS 20 (22)
T ss_dssp ESEEEETSSEESEEGTTTT
T ss_pred ccEEECCCCcCEeCChhhc
Confidence 5666666666666665544
No 63
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.85 E-value=0.00087 Score=47.37 Aligned_cols=42 Identities=26% Similarity=0.378 Sum_probs=23.5
Q ss_pred hhhcCcccceEecccCCCc-ccccc----ccccccccEEeccCCCCC
Q psy3049 45 DLWQFTHLTALYMNDNNLT-RLSGD----ISLLINLRTLDISNNKLR 86 (157)
Q Consensus 45 ~~~~~~~L~~l~l~~~~~~-~~~~~----~~~~~~L~~L~l~~~~~~ 86 (157)
.+.++++++.+++++|.+. ..|+. +..-+.+.+|.+.+|.++
T Consensus 87 aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlG 133 (388)
T COG5238 87 ALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLG 133 (388)
T ss_pred HHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCC
Confidence 3445666777777777665 23322 234455666666666555
No 64
>KOG2982|consensus
Probab=96.84 E-value=0.00053 Score=49.01 Aligned_cols=137 Identities=20% Similarity=0.215 Sum_probs=78.8
Q ss_pred CCCCCCCc---cchhhhcccCCCEEEecCCcceecCccccCCCCCChhhhcCcccceEecccCCCc--cccccccccccc
Q psy3049 1 MNDNNLTR---LSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLT--RLSGDISLLINL 75 (157)
Q Consensus 1 l~~n~i~~---l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~--~~~~~~~~~~~L 75 (157)
|.+|.|++ |..-+..++.+++|+++.|++... ++++ | .+..+|+.+-+.+..+. .....+..++.+
T Consensus 78 L~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~---I~~l---p---~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~v 148 (418)
T KOG2982|consen 78 LTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSD---IKSL---P---LPLKNLRVLVLNGTGLSWTQSTSSLDDLPKV 148 (418)
T ss_pred cccchhccHHHHHHHHhcCccceEeeccCCcCCCc---cccC---c---ccccceEEEEEcCCCCChhhhhhhhhcchhh
Confidence 45677773 434467899999999999998742 1111 1 13456777777777654 333445566666
Q ss_pred cEEeccCCCCCCC--C-hh---------------------------hhCccccceEEcCCCcccCcchh--hcCcCCCcE
Q psy3049 76 RTLDISNNKLRYL--P-SE---------------------------IGDLIYLRELCLNNNNLRTLPYE--LGKLFQIQI 123 (157)
Q Consensus 76 ~~L~l~~~~~~~~--~-~~---------------------------~~~~~~l~~l~l~~n~l~~l~~~--~~~~~~L~~ 123 (157)
+.+.++.|.++.+ . .. .+..+++..+.++.|.+++...+ ...++.+.-
T Consensus 149 telHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~ 228 (418)
T KOG2982|consen 149 TELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSC 228 (418)
T ss_pred hhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchh
Confidence 7776766644421 0 00 11234555566666666644322 455666667
Q ss_pred EEccCCCCCCh-hHHhhcCCCChH
Q psy3049 124 LGLHGNPLSKD-YMKIYNEPNGTQ 146 (157)
Q Consensus 124 l~l~~n~~~~~-~~~~~~~~~~l~ 146 (157)
++|+.|.+... ..+.+.+++.+.
T Consensus 229 LnL~~~~idswasvD~Ln~f~~l~ 252 (418)
T KOG2982|consen 229 LNLGANNIDSWASVDALNGFPQLV 252 (418)
T ss_pred hhhcccccccHHHHHHHcCCchhh
Confidence 77777776643 334444444443
No 65
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.72 E-value=0.0053 Score=38.15 Aligned_cols=103 Identities=17% Similarity=0.348 Sum_probs=53.3
Q ss_pred CCCccchh-hhcccCCCEEEecCCcceecCccccCCCCCChhhhcCcccceEecccCCCcccc-ccccccccccEEeccC
Q psy3049 5 NLTRLSGD-ISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTRLS-GDISLLINLRTLDISN 82 (157)
Q Consensus 5 ~i~~l~~~-~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~-~~~~~~~~L~~L~l~~ 82 (157)
.++.++.. |..+.+++.+.+.++ +..++... +..++.++.+.+.+ .+..++ ..+..+..++.+.+..
T Consensus 22 ~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~---------F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~~ 90 (129)
T PF13306_consen 22 TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNA---------FSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDIPS 90 (129)
T ss_dssp T--EE-TTTTTT-TT-SEEEESST-TSCE-TTT---------TTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEETT
T ss_pred CeeEeChhhccccccccccccccc-ccccceee---------eecccccccccccc-cccccccccccccccccccccCc
Confidence 34556544 778889999999875 77776542 55666799999976 555444 3456688999999976
Q ss_pred CCCCCCCh-hhhCccccceEEcCCCcccCcchh-hcCcCCC
Q psy3049 83 NKLRYLPS-EIGDLIYLRELCLNNNNLRTLPYE-LGKLFQI 121 (157)
Q Consensus 83 ~~~~~~~~-~~~~~~~l~~l~l~~n~l~~l~~~-~~~~~~L 121 (157)
+ ++.++. .+... .++.+.+.. .+..++.. |.++++|
T Consensus 91 ~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 91 N-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKL 128 (129)
T ss_dssp T--BEEHTTTTTT--T--EEE-TT-B-SS----GGG-----
T ss_pred c-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccC
Confidence 5 665543 45554 888888775 55666543 5555554
No 66
>PRK15386 type III secretion protein GogB; Provisional
Probab=96.68 E-value=0.0027 Score=47.54 Aligned_cols=32 Identities=22% Similarity=0.312 Sum_probs=22.3
Q ss_pred ccccEEeccCCCCCCCChhhhCccccceEEcCCC
Q psy3049 73 INLRTLDISNNKLRYLPSEIGDLIYLRELCLNNN 106 (157)
Q Consensus 73 ~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~l~~n 106 (157)
.+|++|++.+|.....|..+. .+|+.|.++.+
T Consensus 156 sSLk~L~Is~c~~i~LP~~LP--~SLk~L~ls~n 187 (426)
T PRK15386 156 PSLKTLSLTGCSNIILPEKLP--ESLQSITLHIE 187 (426)
T ss_pred CcccEEEecCCCcccCccccc--ccCcEEEeccc
Confidence 468889888887655555432 57888888765
No 67
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.58 E-value=0.0041 Score=44.10 Aligned_cols=115 Identities=23% Similarity=0.332 Sum_probs=69.7
Q ss_pred hhhcccCCCEEEecCCcce-ecCccccCCCCCChhhhcCcccceEecccCCCccccc-cc-------------ccccccc
Q psy3049 12 DISLLINLRTLDISNNKLR-YLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTRLSG-DI-------------SLLINLR 76 (157)
Q Consensus 12 ~~~~l~~L~~L~l~~~~l~-~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~-~~-------------~~~~~L~ 76 (157)
.+.+|++|+.++++.|.++ +.|+.++ +.+.....+.+|.+.+|.+..+.. .+ ..-+.|+
T Consensus 87 aLlkcp~l~~v~LSDNAfg~~~~e~L~------d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le 160 (388)
T COG5238 87 ALLKCPRLQKVDLSDNAFGSEFPEELG------DLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLE 160 (388)
T ss_pred HHhcCCcceeeeccccccCcccchHHH------HHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCce
Confidence 3457888888999888887 3444332 224455668888888887753321 11 1235677
Q ss_pred EEeccCCCCCCCChh-----hhCccccceEEcCCCcccC--cc----hhhcCcCCCcEEEccCCCCC
Q psy3049 77 TLDISNNKLRYLPSE-----IGDLIYLRELCLNNNNLRT--LP----YELGKLFQIQILGLHGNPLS 132 (157)
Q Consensus 77 ~L~l~~~~~~~~~~~-----~~~~~~l~~l~l~~n~l~~--l~----~~~~~~~~L~~l~l~~n~~~ 132 (157)
.+...+|++...+.. +..-..++.+.+..|.|.. +. ..+..+.+|..+|++.|-++
T Consensus 161 ~vicgrNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft 227 (388)
T COG5238 161 VVICGRNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFT 227 (388)
T ss_pred EEEeccchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchh
Confidence 777778877655432 2222466677777776661 11 11445667777777777765
No 68
>KOG2120|consensus
Probab=96.37 E-value=0.00064 Score=48.62 Aligned_cols=120 Identities=19% Similarity=0.094 Sum_probs=78.9
Q ss_pred CCCCC-ccchhhhcccCCCEEEecCC-cceecCccccCCCCCChhhhcCcccceEecccCCCcc--ccc-cccccccccE
Q psy3049 3 DNNLT-RLSGDISLLINLRTLDISNN-KLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTR--LSG-DISLLINLRT 77 (157)
Q Consensus 3 ~n~i~-~l~~~~~~l~~L~~L~l~~~-~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~--~~~-~~~~~~~L~~ 77 (157)
++++. +|...+++-.+|..|+++++ ++++..... -+..++.|..|++++|.+.. +.- .-..-.+++.
T Consensus 219 g~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~l--------l~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~ 290 (419)
T KOG2120|consen 219 GLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQL--------LLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQ 290 (419)
T ss_pred ccccCcHHHHHHhccccceeeccccccccchhHHHH--------HHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhh
Confidence 34444 34445677888999999875 555432211 25578889999999997652 111 1123346788
Q ss_pred EeccCCCCC----CCChhhhCccccceEEcCCC-ccc-CcchhhcCcCCCcEEEccCCC
Q psy3049 78 LDISNNKLR----YLPSEIGDLIYLRELCLNNN-NLR-TLPYELGKLFQIQILGLHGNP 130 (157)
Q Consensus 78 L~l~~~~~~----~~~~~~~~~~~l~~l~l~~n-~l~-~l~~~~~~~~~L~~l~l~~n~ 130 (157)
|+++++.-. .+.--...++.+.+||+++| .++ ..-.++.+++.|+++.++.+.
T Consensus 291 LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY 349 (419)
T KOG2120|consen 291 LNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCY 349 (419)
T ss_pred hhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhc
Confidence 888887432 12223567899999999987 444 444568889999999988775
No 69
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=96.33 E-value=0.0028 Score=25.07 Aligned_cols=16 Identities=75% Similarity=1.092 Sum_probs=7.3
Q ss_pred CCCEEEecCCcceecC
Q psy3049 18 NLRTLDISNNKLRYLP 33 (157)
Q Consensus 18 ~L~~L~l~~~~l~~~~ 33 (157)
+|+.|++++|+++++|
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 4666666666665543
No 70
>KOG2123|consensus
Probab=96.21 E-value=0.00024 Score=50.23 Aligned_cols=98 Identities=21% Similarity=0.212 Sum_probs=55.9
Q ss_pred ccCCCEEEecCCcceecCccccCCCCCChhhhcCcccceEecccCCCccccccccccccccEEeccCCCCCCCCh--hhh
Q psy3049 16 LINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTRLSGDISLLINLRTLDISNNKLRYLPS--EIG 93 (157)
Q Consensus 16 l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--~~~ 93 (157)
+.+.+.|++-+++++++.- ..+++.|+.|.++-|+++.+. .+..+++|+.|.|..|.|..+.+ -+.
T Consensus 18 l~~vkKLNcwg~~L~DIsi-----------c~kMp~lEVLsLSvNkIssL~-pl~rCtrLkElYLRkN~I~sldEL~YLk 85 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDISI-----------CEKMPLLEVLSLSVNKISSLA-PLQRCTRLKELYLRKNCIESLDELEYLK 85 (388)
T ss_pred HHHhhhhcccCCCccHHHH-----------HHhcccceeEEeeccccccch-hHHHHHHHHHHHHHhcccccHHHHHHHh
Confidence 4556666666666665421 225566777777777776653 34566677777777777665544 245
Q ss_pred CccccceEEcCCCccc--Ccc----hhhcCcCCCcEEE
Q psy3049 94 DLIYLRELCLNNNNLR--TLP----YELGKLFQIQILG 125 (157)
Q Consensus 94 ~~~~l~~l~l~~n~l~--~l~----~~~~~~~~L~~l~ 125 (157)
++++|+.|=+..|.=. .-+ ..+..+|+|+.||
T Consensus 86 nlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 86 NLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred cCchhhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 6666666655554322 111 2245566666664
No 71
>KOG0473|consensus
Probab=94.80 E-value=0.00078 Score=46.55 Aligned_cols=92 Identities=16% Similarity=0.147 Sum_probs=73.6
Q ss_pred ccc-hhhhcccCCCEEEecCCcceecCccccCCCCCChhhhcCcccceEecccCCCccccccccccccccEEeccCCCCC
Q psy3049 8 RLS-GDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTRLSGDISLLINLRTLDISNNKLR 86 (157)
Q Consensus 8 ~l~-~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 86 (157)
.+| -++..+...+.||++.|++-.+... +.-+..+..++++.|.+...|..++....+..+++..|..+
T Consensus 32 ~~~v~ei~~~kr~tvld~~s~r~vn~~~n----------~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~ 101 (326)
T KOG0473|consen 32 EIPVREIASFKRVTVLDLSSNRLVNLGKN----------FSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHS 101 (326)
T ss_pred ccchhhhhccceeeeehhhhhHHHhhccc----------hHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchh
Confidence 444 2356677888889988888765544 34455678889999999888888888888888888889999
Q ss_pred CCChhhhCccccceEEcCCCccc
Q psy3049 87 YLPSEIGDLIYLRELCLNNNNLR 109 (157)
Q Consensus 87 ~~~~~~~~~~~l~~l~l~~n~l~ 109 (157)
..|..+...++++.+++..|.+.
T Consensus 102 ~~p~s~~k~~~~k~~e~k~~~~~ 124 (326)
T KOG0473|consen 102 QQPKSQKKEPHPKKNEQKKTEFF 124 (326)
T ss_pred hCCccccccCCcchhhhccCcch
Confidence 99999999999999999999866
No 72
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=94.09 E-value=0.063 Score=23.45 Aligned_cols=18 Identities=56% Similarity=0.702 Sum_probs=8.9
Q ss_pred ccceEEcCCCcccCcchh
Q psy3049 97 YLRELCLNNNNLRTLPYE 114 (157)
Q Consensus 97 ~l~~l~l~~n~l~~l~~~ 114 (157)
+|+.|++++|+++.+|..
T Consensus 3 ~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00369 3 NLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCEEECCCCcCCcCCHH
Confidence 445555555555555443
No 73
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=94.09 E-value=0.063 Score=23.45 Aligned_cols=18 Identities=56% Similarity=0.702 Sum_probs=8.9
Q ss_pred ccceEEcCCCcccCcchh
Q psy3049 97 YLRELCLNNNNLRTLPYE 114 (157)
Q Consensus 97 ~l~~l~l~~n~l~~l~~~ 114 (157)
+|+.|++++|+++.+|..
T Consensus 3 ~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00370 3 NLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCEEECCCCcCCcCCHH
Confidence 445555555555555443
No 74
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=93.10 E-value=0.035 Score=23.82 Aligned_cols=21 Identities=14% Similarity=0.237 Sum_probs=12.2
Q ss_pred CCCcEEEccCCCCCChhHHhh
Q psy3049 119 FQIQILGLHGNPLSKDYMKIY 139 (157)
Q Consensus 119 ~~L~~l~l~~n~~~~~~~~~~ 139 (157)
++|++|+++.|.+++..+..+
T Consensus 2 ~~L~~L~l~~n~i~~~g~~~l 22 (24)
T PF13516_consen 2 PNLETLDLSNNQITDEGASAL 22 (24)
T ss_dssp TT-SEEE-TSSBEHHHHHHHH
T ss_pred CCCCEEEccCCcCCHHHHHHh
Confidence 566777777777766655544
No 75
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=89.84 E-value=0.22 Score=21.98 Aligned_cols=17 Identities=47% Similarity=0.819 Sum_probs=10.5
Q ss_pred CCCEEEecCCcceecCc
Q psy3049 18 NLRTLDISNNKLRYLPS 34 (157)
Q Consensus 18 ~L~~L~l~~~~l~~~~~ 34 (157)
.|+.|+.++|+++.+|+
T Consensus 3 ~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 3 SLKELNVSNNQLTSLPE 19 (26)
T ss_pred ccceeecCCCccccCcc
Confidence 45666666666666554
No 76
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=89.75 E-value=0.41 Score=21.37 Aligned_cols=22 Identities=18% Similarity=0.214 Sum_probs=16.3
Q ss_pred CCCcEEEccCCCCCChhHHhhc
Q psy3049 119 FQIQILGLHGNPLSKDYMKIYN 140 (157)
Q Consensus 119 ~~L~~l~l~~n~~~~~~~~~~~ 140 (157)
++|++|+|++|.+.......++
T Consensus 2 ~~L~~LdL~~N~i~~~G~~~L~ 23 (28)
T smart00368 2 PSLRELDLSNNKLGDEGARALA 23 (28)
T ss_pred CccCEEECCCCCCCHHHHHHHH
Confidence 5688899999988876555543
No 77
>KOG4308|consensus
Probab=87.60 E-value=0.013 Score=45.08 Aligned_cols=126 Identities=26% Similarity=0.258 Sum_probs=73.7
Q ss_pred hhhhcccCCCEEEecCCcceecCccccCC-CCCChhhhcCcccceEecccCCCcc-----cccccccccc-ccEEeccCC
Q psy3049 11 GDISLLINLRTLDISNNKLRYLPSEIGAV-KNLSPDLWQFTHLTALYMNDNNLTR-----LSGDISLLIN-LRTLDISNN 83 (157)
Q Consensus 11 ~~~~~l~~L~~L~l~~~~l~~~~~~~~~~-~~~~~~~~~~~~L~~l~l~~~~~~~-----~~~~~~~~~~-L~~L~l~~~ 83 (157)
..+.....++.++++.|.+.... ...+ +.++..+....+++++.+.+|.++. +...+....+ +..+++..|
T Consensus 166 ~~L~~~~~l~~l~l~~n~l~~~g--~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n 243 (478)
T KOG4308|consen 166 AVLEKNEHLTELDLSLNGLIELG--LLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASN 243 (478)
T ss_pred HHHhcccchhHHHHHhcccchhh--hHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhc
Confidence 34445666777777777775211 0000 0011112245678888888887761 1122333344 555788888
Q ss_pred CCCCC-----ChhhhCc-cccceEEcCCCccc-----CcchhhcCcCCCcEEEccCCCCCChhHHh
Q psy3049 84 KLRYL-----PSEIGDL-IYLRELCLNNNNLR-----TLPYELGKLFQIQILGLHGNPLSKDYMKI 138 (157)
Q Consensus 84 ~~~~~-----~~~~~~~-~~l~~l~l~~n~l~-----~l~~~~~~~~~L~~l~l~~n~~~~~~~~~ 138 (157)
.+... .+.+..+ ..+++++++.|.++ .++..+.+.+.++++.+..|++.+.....
T Consensus 244 ~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~~~~~~ 309 (478)
T KOG4308|consen 244 KLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTDYGVEL 309 (478)
T ss_pred CcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccccHHHHH
Confidence 77622 2334444 56688888888887 34455677778888888888887664443
No 78
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=87.05 E-value=0.64 Score=20.49 Aligned_cols=16 Identities=44% Similarity=0.731 Sum_probs=9.8
Q ss_pred cCCCEEEecCCcceec
Q psy3049 17 INLRTLDISNNKLRYL 32 (157)
Q Consensus 17 ~~L~~L~l~~~~l~~~ 32 (157)
.+|+.|+++.|.|+.+
T Consensus 2 ~~L~~L~L~~NkI~~I 17 (26)
T smart00365 2 TNLEELDLSQNKIKKI 17 (26)
T ss_pred CccCEEECCCCcccee
Confidence 4566666666666543
No 79
>KOG3864|consensus
Probab=85.71 E-value=0.69 Score=31.59 Aligned_cols=77 Identities=19% Similarity=0.230 Sum_probs=40.7
Q ss_pred cccEEeccCCCCCCC-ChhhhCccccceEEcCCCccc-Ccc-hhhc-CcCCCcEEEccCC-CCCChhHHhhcCCCChHHH
Q psy3049 74 NLRTLDISNNKLRYL-PSEIGDLIYLRELCLNNNNLR-TLP-YELG-KLFQIQILGLHGN-PLSKDYMKIYNEPNGTQKL 148 (157)
Q Consensus 74 ~L~~L~l~~~~~~~~-~~~~~~~~~l~~l~l~~n~l~-~l~-~~~~-~~~~L~~l~l~~n-~~~~~~~~~~~~~~~l~~l 148 (157)
.++.++-+++.|... -..+.+++.++.+.+.+|.-- ..- +.++ -.++|+.|++++| .|++....++...++|+.+
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L 181 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL 181 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence 345555555555433 234555566666665555322 110 0011 3456777777766 4666666666666666665
Q ss_pred HH
Q psy3049 149 LS 150 (157)
Q Consensus 149 ~~ 150 (157)
..
T Consensus 182 ~l 183 (221)
T KOG3864|consen 182 HL 183 (221)
T ss_pred Hh
Confidence 43
No 80
>KOG1947|consensus
Probab=80.04 E-value=1.8 Score=32.87 Aligned_cols=84 Identities=21% Similarity=0.150 Sum_probs=43.0
Q ss_pred cCcccceEecccC-CC-cccc----ccccccccccEEeccCCC-CCCCC--hhhhCccccceEEcCCCc-cc--Ccchhh
Q psy3049 48 QFTHLTALYMNDN-NL-TRLS----GDISLLINLRTLDISNNK-LRYLP--SEIGDLIYLRELCLNNNN-LR--TLPYEL 115 (157)
Q Consensus 48 ~~~~L~~l~l~~~-~~-~~~~----~~~~~~~~L~~L~l~~~~-~~~~~--~~~~~~~~l~~l~l~~n~-l~--~l~~~~ 115 (157)
..+.|+.+++.++ .. ...+ .....+..++.+++..+. ++..- .....+++|+.+.+.++. ++ .+....
T Consensus 212 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~ 291 (482)
T KOG1947|consen 212 KCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIA 291 (482)
T ss_pred hCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHH
Confidence 4556666666652 11 1111 122344566667766664 44321 112225677777766655 44 233334
Q ss_pred cCcCCCcEEEccCCCC
Q psy3049 116 GKLFQIQILGLHGNPL 131 (157)
Q Consensus 116 ~~~~~L~~l~l~~n~~ 131 (157)
..++.|++++++.+..
T Consensus 292 ~~~~~L~~L~l~~c~~ 307 (482)
T KOG1947|consen 292 ERCPSLRELDLSGCHG 307 (482)
T ss_pred HhcCcccEEeeecCcc
Confidence 5666677777776543
No 81
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=77.28 E-value=2.1 Score=39.85 Aligned_cols=31 Identities=35% Similarity=0.462 Sum_probs=21.5
Q ss_pred eccCCCCCCCCh-hhhCccccceEEcCCCccc
Q psy3049 79 DISNNKLRYLPS-EIGDLIYLRELCLNNNNLR 109 (157)
Q Consensus 79 ~l~~~~~~~~~~-~~~~~~~l~~l~l~~n~l~ 109 (157)
+|++|+|+.++. .+..+++|+.|+|.+|.+.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccc
Confidence 466777777765 4556677777777777666
No 82
>KOG3864|consensus
Probab=76.93 E-value=0.83 Score=31.20 Aligned_cols=33 Identities=24% Similarity=0.106 Sum_probs=14.9
Q ss_pred cccceEEcCCC-cccCcc-hhhcCcCCCcEEEccC
Q psy3049 96 IYLRELCLNNN-NLRTLP-YELGKLFQIQILGLHG 128 (157)
Q Consensus 96 ~~l~~l~l~~n-~l~~l~-~~~~~~~~L~~l~l~~ 128 (157)
++|+.|++++| +|++-- .++.++++|+.+++.+
T Consensus 151 ~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~ 185 (221)
T KOG3864|consen 151 PSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYD 185 (221)
T ss_pred cchheeeccCCCeechhHHHHHHHhhhhHHHHhcC
Confidence 45555555544 344221 2244455555554433
No 83
>KOG3763|consensus
Probab=76.88 E-value=1.2 Score=34.85 Aligned_cols=15 Identities=40% Similarity=0.643 Sum_probs=7.7
Q ss_pred CCcEEEccCCCCCCh
Q psy3049 120 QIQILGLHGNPLSKD 134 (157)
Q Consensus 120 ~L~~l~l~~n~~~~~ 134 (157)
-|+++.+.+|+++..
T Consensus 271 ~Leel~l~GNPlc~t 285 (585)
T KOG3763|consen 271 PLEELVLEGNPLCTT 285 (585)
T ss_pred CHHHeeecCCccccc
Confidence 345555555555433
No 84
>KOG1947|consensus
Probab=71.73 E-value=2.9 Score=31.79 Aligned_cols=90 Identities=30% Similarity=0.166 Sum_probs=46.0
Q ss_pred hhcccCCCEEEecCCcc--eecCccccCCCCCChhhhcCcccceEecccCC-Cccc--cccccccccccEEeccCCC-CC
Q psy3049 13 ISLLINLRTLDISNNKL--RYLPSEIGAVKNLSPDLWQFTHLTALYMNDNN-LTRL--SGDISLLINLRTLDISNNK-LR 86 (157)
Q Consensus 13 ~~~l~~L~~L~l~~~~l--~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~-~~~~--~~~~~~~~~L~~L~l~~~~-~~ 86 (157)
...++.|+.|+++++.. ...+... ......+..++.++++.+. ++.. ......++.|+.|.+.++. ++
T Consensus 210 ~~~~~~L~~L~l~~~~~~~~~~~~~~------~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt 283 (482)
T KOG1947|consen 210 ALKCPNLEELDLSGCCLLITLSPLLL------LLLLSICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLT 283 (482)
T ss_pred HhhCchhheecccCcccccccchhHh------hhhhhhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccc
Confidence 45677788888876311 1111000 0012234566777777666 4422 1112235667777765554 44
Q ss_pred --CCChhhhCccccceEEcCCCcc
Q psy3049 87 --YLPSEIGDLIYLRELCLNNNNL 108 (157)
Q Consensus 87 --~~~~~~~~~~~l~~l~l~~n~l 108 (157)
.+......++.|++++++.+..
T Consensus 284 ~~gl~~i~~~~~~L~~L~l~~c~~ 307 (482)
T KOG1947|consen 284 DEGLVSIAERCPSLRELDLSGCHG 307 (482)
T ss_pred hhHHHHHHHhcCcccEEeeecCcc
Confidence 2333445566677777776633
No 85
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=63.33 E-value=6.5 Score=36.95 Aligned_cols=30 Identities=23% Similarity=0.473 Sum_probs=27.0
Q ss_pred CCCCCCCccchh-hhcccCCCEEEecCCcce
Q psy3049 1 MNDNNLTRLSGD-ISLLINLRTLDISNNKLR 30 (157)
Q Consensus 1 l~~n~i~~l~~~-~~~l~~L~~L~l~~~~l~ 30 (157)
|++|+|+.|+.. |..+.+|+.|+|++|.+.
T Consensus 2 LSnN~LstLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 2 ISNNKISTIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCcCCccChHHhccCCCceEEEeeCCccc
Confidence 689999999976 888999999999999775
No 86
>KOG3763|consensus
Probab=62.40 E-value=5.2 Score=31.57 Aligned_cols=62 Identities=31% Similarity=0.378 Sum_probs=34.6
Q ss_pred cCcccceEecccCCCccc---cccccccccccEEeccCC--CCCCCCh-hhhCccccceEEcCCCccc
Q psy3049 48 QFTHLTALYMNDNNLTRL---SGDISLLINLRTLDISNN--KLRYLPS-EIGDLIYLRELCLNNNNLR 109 (157)
Q Consensus 48 ~~~~L~~l~l~~~~~~~~---~~~~~~~~~L~~L~l~~~--~~~~~~~-~~~~~~~l~~l~l~~n~l~ 109 (157)
+.+.+..+++++|.+..+ ..-....+++..|+|++| .+..-++ .-.....|+++-+-+|.+.
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc 283 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLC 283 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCccc
Confidence 455566777777766533 222345667777888777 3322211 1112234667777777666
No 87
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=54.42 E-value=16 Score=15.56 Aligned_cols=16 Identities=19% Similarity=0.393 Sum_probs=8.6
Q ss_pred CCCcEEEccCCC-CCCh
Q psy3049 119 FQIQILGLHGNP-LSKD 134 (157)
Q Consensus 119 ~~L~~l~l~~n~-~~~~ 134 (157)
++|++++++.+. +++.
T Consensus 2 ~~L~~L~l~~C~~itD~ 18 (26)
T smart00367 2 PNLRELDLSGCTNITDE 18 (26)
T ss_pred CCCCEeCCCCCCCcCHH
Confidence 456666666653 4443
No 88
>KOG4341|consensus
Probab=50.88 E-value=11 Score=28.96 Aligned_cols=13 Identities=23% Similarity=-0.036 Sum_probs=7.2
Q ss_pred cccCCCEEEecCC
Q psy3049 15 LLINLRTLDISNN 27 (157)
Q Consensus 15 ~l~~L~~L~l~~~ 27 (157)
.++.|+.|+.+++
T Consensus 292 ~c~~lq~l~~s~~ 304 (483)
T KOG4341|consen 292 GCHALQVLCYSSC 304 (483)
T ss_pred hhhHhhhhcccCC
Confidence 3555666665543
Done!