Query psy3049
Match_columns 157
No_of_seqs 118 out of 1363
Neff 10.6
Searched_HMMs 29240
Date Sat Aug 17 00:23:08 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3049.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/3049hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fcg_A Uncharacterized protein 99.8 8.9E-21 3E-25 136.1 8.3 32 3-34 113-144 (328)
2 4fcg_A Uncharacterized protein 99.8 1.3E-20 4.3E-25 135.3 7.8 147 1-147 88-257 (328)
3 3e6j_A Variable lymphocyte rec 99.8 6.5E-19 2.2E-23 120.5 14.3 125 1-134 47-174 (229)
4 2v70_A SLIT-2, SLIT homolog 2 99.8 1E-18 3.5E-23 118.9 12.9 125 1-134 39-168 (220)
5 2v9t_B SLIT homolog 2 protein 99.8 1.3E-18 4.3E-23 118.4 12.9 124 2-134 40-167 (220)
6 3m19_A Variable lymphocyte rec 99.8 5.9E-19 2E-23 122.1 10.4 134 1-134 42-194 (251)
7 1p9a_G Platelet glycoprotein I 99.8 3.6E-18 1.2E-22 120.6 14.0 135 3-154 86-222 (290)
8 2v9t_B SLIT homolog 2 protein 99.8 1E-18 3.5E-23 118.8 9.9 134 2-146 19-155 (220)
9 3e6j_A Variable lymphocyte rec 99.8 1.4E-18 4.7E-23 118.9 10.0 134 2-146 27-162 (229)
10 3m19_A Variable lymphocyte rec 99.8 1.2E-17 4.1E-22 115.5 14.6 109 1-109 66-192 (251)
11 4b8c_D Glucose-repressible alc 99.8 1.2E-18 4.3E-23 136.4 10.5 130 3-142 210-339 (727)
12 2o6s_A Variable lymphocyte rec 99.8 1.6E-17 5.6E-22 111.8 14.4 136 1-152 35-174 (208)
13 4g8a_A TOLL-like receptor 4; l 99.8 1.5E-18 5.2E-23 133.1 10.2 131 1-140 59-194 (635)
14 2wfh_A SLIT homolog 2 protein 99.8 1E-17 3.4E-22 111.8 12.8 134 1-154 17-153 (193)
15 2v70_A SLIT-2, SLIT homolog 2 99.8 3.2E-18 1.1E-22 116.4 10.5 136 1-146 18-156 (220)
16 2o6q_A Variable lymphocyte rec 99.8 2.8E-18 9.6E-23 119.9 10.5 140 1-140 44-202 (270)
17 3rfs_A Internalin B, repeat mo 99.8 3E-18 1E-22 119.9 10.6 87 47-133 130-219 (272)
18 1ozn_A Reticulon 4 receptor; N 99.8 4.7E-18 1.6E-22 119.5 10.8 100 46-145 125-227 (285)
19 1w8a_A SLIT protein; signaling 99.8 1.3E-17 4.4E-22 111.1 12.3 125 1-135 15-142 (192)
20 1p9a_G Platelet glycoprotein I 99.8 3.2E-18 1.1E-22 120.9 9.8 134 1-134 38-187 (290)
21 2o6q_A Variable lymphocyte rec 99.8 4.1E-18 1.4E-22 119.0 10.3 145 1-147 23-185 (270)
22 3o53_A Protein LRIM1, AGAP0063 99.8 6E-18 2E-22 120.7 10.8 141 1-151 127-270 (317)
23 1ozn_A Reticulon 4 receptor; N 99.8 5.7E-18 1.9E-22 119.0 10.4 147 1-147 39-205 (285)
24 2xot_A Amphoterin-induced prot 99.7 1.7E-17 6E-22 120.3 11.4 135 1-144 46-188 (361)
25 2z62_A TOLL-like receptor 4, v 99.7 1.2E-17 4E-22 116.9 9.9 132 1-141 35-171 (276)
26 2ell_A Acidic leucine-rich nuc 99.7 1.4E-17 4.8E-22 108.5 9.3 109 17-136 24-137 (168)
27 3rfs_A Internalin B, repeat mo 99.7 1.2E-16 4E-21 111.8 14.4 136 1-146 70-208 (272)
28 2o6r_A Variable lymphocyte rec 99.7 9.2E-17 3.1E-21 105.5 12.7 125 1-136 14-141 (177)
29 3rgz_A Protein brassinosteroid 99.7 2.4E-17 8.4E-22 129.8 11.0 74 73-146 632-707 (768)
30 2o6s_A Variable lymphocyte rec 99.7 3E-17 1E-21 110.4 9.9 135 2-147 15-152 (208)
31 2z66_A Variable lymphocyte rec 99.7 7.7E-18 2.6E-22 119.4 7.3 141 2-142 86-246 (306)
32 4ezg_A Putative uncharacterize 99.7 1.6E-17 5.3E-22 111.1 8.4 130 2-146 52-184 (197)
33 1ogq_A PGIP-2, polygalacturona 99.7 6.9E-18 2.4E-22 120.3 6.7 136 2-138 133-287 (313)
34 1ogq_A PGIP-2, polygalacturona 99.7 9.2E-18 3.1E-22 119.7 7.0 143 2-145 58-223 (313)
35 1h6u_A Internalin H; cell adhe 99.7 7.6E-17 2.6E-21 114.7 11.2 86 47-135 126-211 (308)
36 3oja_A Leucine-rich immune mol 99.7 8.3E-17 2.8E-21 121.0 11.7 140 1-150 127-269 (487)
37 1xeu_A Internalin C; cellular 99.7 6.6E-17 2.2E-21 112.7 10.3 126 2-145 49-174 (263)
38 2z80_A TOLL-like receptor 2, v 99.7 8.1E-18 2.8E-22 121.6 5.8 133 2-143 60-198 (353)
39 4g8a_A TOLL-like receptor 4; l 99.7 3.4E-17 1.2E-21 125.6 9.4 134 3-147 40-177 (635)
40 3zyj_A Leucine-rich repeat-con 99.7 5.6E-17 1.9E-21 120.4 10.2 144 1-145 119-281 (440)
41 3vq2_A TLR4, TOLL-like recepto 99.7 3.1E-17 1.1E-21 125.8 9.0 131 1-140 39-174 (606)
42 3zyi_A Leucine-rich repeat-con 99.7 5.4E-17 1.8E-21 120.8 9.7 144 1-145 82-244 (452)
43 1h6t_A Internalin B; cell adhe 99.7 1.8E-16 6.2E-21 111.9 11.8 139 1-146 53-203 (291)
44 4ecn_A Leucine-rich repeat pro 99.7 1.2E-17 4.1E-22 132.8 5.9 140 3-144 434-619 (876)
45 1h6u_A Internalin H; cell adhe 99.7 1.7E-16 5.9E-21 112.8 11.2 121 1-136 70-190 (308)
46 1a9n_A U2A', U2A'; complex (nu 99.7 9.3E-17 3.2E-21 105.5 9.1 119 2-132 27-153 (176)
47 3zyj_A Leucine-rich repeat-con 99.7 6.6E-17 2.3E-21 120.0 9.2 144 1-145 71-233 (440)
48 2je0_A Acidic leucine-rich nuc 99.7 5.3E-17 1.8E-21 103.8 7.6 121 15-146 15-143 (149)
49 2je0_A Acidic leucine-rich nuc 99.7 3.1E-17 1.1E-21 104.9 6.5 117 1-128 24-149 (149)
50 3v47_A TOLL-like receptor 5B a 99.7 4.2E-16 1.4E-20 115.8 13.4 127 1-136 282-412 (455)
51 2xwt_C Thyrotropin receptor; s 99.7 1.3E-17 4.4E-22 114.5 4.8 140 2-142 39-203 (239)
52 2ell_A Acidic leucine-rich nuc 99.7 9.7E-17 3.3E-21 104.5 8.7 123 1-134 31-162 (168)
53 2z63_A TOLL-like receptor 4, v 99.7 1.1E-16 3.8E-21 121.8 10.3 131 1-140 35-170 (570)
54 3zyi_A Leucine-rich repeat-con 99.7 7.9E-17 2.7E-21 120.0 9.3 142 1-143 130-290 (452)
55 4eco_A Uncharacterized protein 99.7 6.9E-18 2.4E-22 130.5 2.9 29 3-31 192-220 (636)
56 1h6t_A Internalin B; cell adhe 99.7 4.4E-16 1.5E-20 110.0 11.5 136 3-146 33-181 (291)
57 2z66_A Variable lymphocyte rec 99.7 6.4E-17 2.2E-21 114.7 7.2 100 46-145 122-225 (306)
58 2id5_A Lingo-1, leucine rich r 99.7 1.5E-16 5.1E-21 119.0 9.5 134 1-143 39-176 (477)
59 2z80_A TOLL-like receptor 2, v 99.7 1.1E-16 3.8E-21 115.6 8.4 135 2-147 39-178 (353)
60 2z62_A TOLL-like receptor 4, v 99.7 1E-16 3.6E-21 112.1 8.0 146 1-153 59-251 (276)
61 2xwt_C Thyrotropin receptor; s 99.7 2.7E-17 9.3E-22 112.9 4.7 126 5-134 22-171 (239)
62 3rgz_A Protein brassinosteroid 99.7 2.1E-16 7.1E-21 124.5 9.6 141 2-142 402-561 (768)
63 1xku_A Decorin; proteoglycan, 99.7 4.6E-16 1.6E-20 111.4 10.6 137 2-140 84-237 (330)
64 4ezg_A Putative uncharacterize 99.7 4.7E-16 1.6E-20 103.9 9.9 119 2-133 74-195 (197)
65 4ecn_A Leucine-rich repeat pro 99.7 3.8E-16 1.3E-20 124.2 11.0 36 1-36 602-638 (876)
66 3vq2_A TLR4, TOLL-like recepto 99.7 2.6E-16 9E-21 120.7 9.7 136 2-148 19-158 (606)
67 1xeu_A Internalin C; cellular 99.7 3.3E-16 1.1E-20 109.1 9.0 128 2-147 27-154 (263)
68 2xot_A Amphoterin-induced prot 99.7 2.9E-16 9.9E-21 113.9 9.0 128 1-139 25-156 (361)
69 3t6q_A CD180 antigen; protein- 99.7 4.8E-16 1.6E-20 119.3 10.6 137 1-146 40-180 (606)
70 2z7x_B TOLL-like receptor 1, v 99.7 1.2E-15 4E-20 115.2 12.4 133 1-135 331-484 (520)
71 1a9n_A U2A', U2A'; complex (nu 99.7 9.7E-17 3.3E-21 105.4 5.6 123 12-146 14-143 (176)
72 2z81_A CD282 antigen, TOLL-lik 99.7 6.6E-17 2.3E-21 122.7 5.5 134 2-144 34-173 (549)
73 4eco_A Uncharacterized protein 99.7 2.2E-16 7.4E-21 122.2 8.4 98 49-146 456-569 (636)
74 3o6n_A APL1; leucine-rich repe 99.7 5.9E-16 2E-20 113.2 10.2 129 2-139 53-185 (390)
75 2id5_A Lingo-1, leucine rich r 99.7 2.1E-16 7.2E-21 118.2 7.5 134 1-143 63-200 (477)
76 1ds9_A Outer arm dynein; leuci 99.6 2.1E-18 7.1E-23 115.4 -3.4 121 5-137 36-158 (198)
77 1m9s_A Internalin B; cell inva 99.6 1.6E-15 5.4E-20 116.7 12.0 139 1-146 50-200 (605)
78 3oja_B Anopheles plasmodium-re 99.6 7.4E-16 2.5E-20 118.4 10.1 32 115-146 250-281 (597)
79 2z7x_B TOLL-like receptor 1, v 99.6 5.9E-16 2E-20 116.8 9.4 120 1-133 7-129 (520)
80 1dce_A Protein (RAB geranylger 99.6 1.5E-15 5.1E-20 116.1 11.4 107 18-136 442-550 (567)
81 1wwl_A Monocyte differentiatio 99.6 1.3E-16 4.5E-21 113.6 5.0 86 47-134 198-289 (312)
82 4fmz_A Internalin; leucine ric 99.6 3.3E-15 1.1E-19 107.5 12.0 140 2-146 163-314 (347)
83 3oja_B Anopheles plasmodium-re 99.6 1.4E-15 4.8E-20 116.8 10.6 129 2-139 59-191 (597)
84 3cvr_A Invasion plasmid antige 99.6 1.9E-15 6.4E-20 115.4 11.1 129 1-141 107-252 (571)
85 1xku_A Decorin; proteoglycan, 99.6 3.4E-15 1.2E-19 106.8 11.9 89 51-139 193-283 (330)
86 3o6n_A APL1; leucine-rich repe 99.6 1.9E-15 6.7E-20 110.4 10.8 125 2-138 234-358 (390)
87 1ziw_A TOLL-like receptor 3; i 99.6 3.4E-15 1.2E-19 116.0 12.4 142 1-142 32-194 (680)
88 1m9s_A Internalin B; cell inva 99.6 2.4E-15 8.3E-20 115.7 11.5 138 2-147 29-179 (605)
89 2ft3_A Biglycan; proteoglycan, 99.6 1.2E-15 4E-20 109.4 9.2 147 1-148 154-325 (332)
90 2ft3_A Biglycan; proteoglycan, 99.6 2.8E-15 9.5E-20 107.4 11.0 139 1-141 130-286 (332)
91 3g39_A Variable lymphocyte rec 99.6 8.7E-15 3E-19 95.6 12.0 105 18-134 10-117 (170)
92 1ziw_A TOLL-like receptor 3; i 99.6 9E-16 3.1E-20 119.2 8.5 137 2-140 12-166 (680)
93 2z81_A CD282 antigen, TOLL-lik 99.6 9.1E-16 3.1E-20 116.4 8.2 135 2-147 13-152 (549)
94 3a79_B TLR6, VLRB.59, TOLL-lik 99.6 3.2E-15 1.1E-19 114.0 11.2 120 1-133 38-160 (562)
95 1w8a_A SLIT protein; signaling 99.6 8.9E-16 3E-20 102.2 7.2 117 19-147 10-130 (192)
96 2r9u_A Variable lymphocyte rec 99.6 1E-14 3.5E-19 95.7 12.0 104 19-134 14-120 (174)
97 3a79_B TLR6, VLRB.59, TOLL-lik 99.6 4.3E-15 1.5E-19 113.3 11.6 134 1-136 360-514 (562)
98 3oja_A Leucine-rich immune mol 99.6 9.1E-16 3.1E-20 115.4 7.4 95 48-144 142-238 (487)
99 4fmz_A Internalin; leucine ric 99.6 5.2E-15 1.8E-19 106.4 11.0 138 2-146 185-336 (347)
100 2z63_A TOLL-like receptor 4, v 99.6 4.8E-16 1.7E-20 118.3 5.7 90 45-134 440-533 (570)
101 2wfh_A SLIT homolog 2 protein 99.6 2.6E-15 8.9E-20 100.1 8.6 117 19-147 12-130 (193)
102 4glp_A Monocyte differentiatio 99.6 3.4E-16 1.2E-20 111.3 4.5 85 48-134 195-287 (310)
103 4b8c_D Glucose-repressible alc 99.6 1.5E-16 5E-21 124.7 2.7 127 1-137 231-359 (727)
104 3v47_A TOLL-like receptor 5B a 99.6 2.9E-15 9.8E-20 111.3 9.4 132 1-141 37-176 (455)
105 3t6q_A CD180 antigen; protein- 99.6 2.7E-15 9.2E-20 115.1 8.8 145 1-145 261-427 (606)
106 1dce_A Protein (RAB geranylger 99.6 6E-15 2E-19 112.8 9.7 114 1-126 448-567 (567)
107 1wwl_A Monocyte differentiatio 99.6 3.1E-15 1.1E-19 106.5 7.6 131 1-134 156-311 (312)
108 3g06_A SSPH2 (leucine-rich rep 99.6 2.1E-14 7.3E-19 110.7 12.3 115 17-140 181-305 (622)
109 3o53_A Protein LRIM1, AGAP0063 99.6 1.6E-15 5.5E-20 108.2 5.7 120 16-146 119-240 (317)
110 1o6v_A Internalin A; bacterial 99.6 1.8E-14 6.2E-19 107.6 11.5 137 1-145 228-377 (466)
111 1o6v_A Internalin A; bacterial 99.6 2.5E-14 8.5E-19 106.9 11.2 128 2-134 185-324 (466)
112 3cvr_A Invasion plasmid antige 99.6 1.5E-14 5E-19 110.6 9.8 129 1-146 87-233 (571)
113 3j0a_A TOLL-like receptor 5; m 99.6 4.9E-15 1.7E-19 117.8 7.0 97 44-140 67-169 (844)
114 3bz5_A Internalin-J, INLJ; leu 99.5 2.5E-14 8.5E-19 106.8 9.8 94 1-111 49-142 (457)
115 2r9u_A Variable lymphocyte rec 99.5 5E-14 1.7E-18 92.4 9.4 102 1-113 19-122 (174)
116 4glp_A Monocyte differentiatio 99.5 9.6E-15 3.3E-19 103.8 6.2 131 1-134 152-309 (310)
117 3bz5_A Internalin-J, INLJ; leu 99.5 1E-13 3.4E-18 103.6 11.5 88 46-139 166-253 (457)
118 3j0a_A TOLL-like receptor 5; m 99.5 2.6E-14 8.8E-19 113.7 8.6 135 2-148 12-153 (844)
119 2o6r_A Variable lymphocyte rec 99.5 5.2E-14 1.8E-18 92.3 8.4 117 18-146 8-127 (177)
120 1jl5_A Outer protein YOPM; leu 99.5 1.5E-13 5E-18 102.6 11.4 124 1-133 138-271 (454)
121 4ay9_X Follicle-stimulating ho 99.5 2.5E-14 8.7E-19 103.3 7.0 146 1-146 37-229 (350)
122 3g39_A Variable lymphocyte rec 99.5 1.6E-13 5.5E-18 89.6 9.6 98 1-109 16-115 (170)
123 2ast_B S-phase kinase-associat 99.5 7.3E-15 2.5E-19 105.2 2.8 100 46-145 138-249 (336)
124 3g06_A SSPH2 (leucine-rich rep 99.5 2.2E-13 7.4E-18 105.1 10.0 133 2-147 129-288 (622)
125 1ds9_A Outer arm dynein; leuci 99.5 7.2E-16 2.5E-20 103.0 -3.7 130 13-147 14-144 (198)
126 2ifg_A High affinity nerve gro 99.4 1.3E-12 4.4E-17 94.0 11.3 103 21-134 12-118 (347)
127 2ca6_A RAN GTPase-activating p 99.4 4.5E-14 1.5E-18 103.1 2.9 22 9-30 114-135 (386)
128 1jl5_A Outer protein YOPM; leu 99.4 2.4E-12 8.3E-17 96.0 11.1 124 2-133 79-209 (454)
129 2ca6_A RAN GTPase-activating p 99.4 6.1E-13 2.1E-17 97.1 6.5 118 12-135 182-319 (386)
130 2ast_B S-phase kinase-associat 99.4 1.8E-13 6.2E-18 97.9 3.5 145 2-146 101-275 (336)
131 2ifg_A High affinity nerve gro 99.4 3.2E-12 1.1E-16 91.9 9.7 98 2-109 16-116 (347)
132 3goz_A Leucine-rich repeat-con 99.3 3.1E-12 1.1E-16 92.7 7.3 18 13-30 46-64 (362)
133 4ay9_X Follicle-stimulating ho 99.3 1.1E-11 3.9E-16 89.4 7.3 100 2-112 17-120 (350)
134 3goz_A Leucine-rich repeat-con 99.3 1.3E-11 4.5E-16 89.4 7.6 34 1-34 5-39 (362)
135 1z7x_W Ribonuclease inhibitor; 99.2 2.8E-12 9.7E-17 95.2 2.6 89 50-138 313-417 (461)
136 3sb4_A Hypothetical leucine ri 99.2 3.2E-11 1.1E-15 86.3 6.1 98 49-148 225-326 (329)
137 1z7x_W Ribonuclease inhibitor; 99.2 1.1E-11 3.7E-16 92.1 3.3 20 11-30 164-183 (461)
138 3un9_A NLR family member X1; l 99.1 1.2E-11 4.1E-16 90.1 2.5 94 49-142 154-262 (372)
139 3sb4_A Hypothetical leucine ri 99.1 9.7E-11 3.3E-15 83.8 4.1 75 72-148 225-302 (329)
140 3un9_A NLR family member X1; l 99.0 1.4E-10 4.8E-15 84.5 2.9 131 1-139 79-231 (372)
141 1io0_A Tropomodulin; LRR prote 98.9 6.4E-10 2.2E-14 73.4 2.3 117 13-134 32-166 (185)
142 3ogk_B Coronatine-insensitive 98.8 4.1E-09 1.4E-13 80.5 4.6 128 14-146 161-321 (592)
143 3ogk_B Coronatine-insensitive 98.7 6.4E-09 2.2E-13 79.5 3.4 17 14-30 189-205 (592)
144 4fdw_A Leucine rich hypothetic 98.6 1.7E-07 5.8E-12 68.9 7.2 31 5-35 167-198 (401)
145 1io0_A Tropomodulin; LRR prote 98.5 1.5E-07 5E-12 62.0 5.6 94 46-139 32-143 (185)
146 3rw6_A Nuclear RNA export fact 98.4 4.3E-08 1.5E-12 68.2 1.2 65 70-135 167-236 (267)
147 2p1m_B Transport inhibitor res 98.4 3.2E-08 1.1E-12 75.6 -0.8 16 15-30 103-118 (594)
148 3rw6_A Nuclear RNA export fact 98.3 9.3E-07 3.2E-11 61.5 6.0 77 48-125 168-257 (267)
149 2p1m_B Transport inhibitor res 98.3 7.2E-08 2.4E-12 73.6 -0.5 88 9-102 148-241 (594)
150 4fdw_A Leucine rich hypothetic 98.3 4.3E-06 1.5E-10 61.5 8.8 136 4-143 212-369 (401)
151 3rfe_A Platelet glycoprotein I 98.2 4E-06 1.4E-10 52.0 6.7 56 77-134 12-70 (130)
152 2ra8_A Uncharacterized protein 98.1 1.3E-05 4.4E-10 58.2 7.4 68 72-139 251-327 (362)
153 2ra8_A Uncharacterized protein 98.1 3.7E-06 1.3E-10 61.0 4.5 120 9-140 164-300 (362)
154 3e4g_A ATP synthase subunit S, 98.0 9.1E-06 3.1E-10 53.0 5.0 84 51-134 62-155 (176)
155 4h09_A Hypothetical leucine ri 97.8 0.00016 5.5E-09 52.3 9.0 94 46-142 259-355 (379)
156 1pgv_A TMD-1, tropomodulin TMD 97.7 1.6E-05 5.6E-10 52.7 2.7 113 15-132 39-170 (197)
157 3e4g_A ATP synthase subunit S, 97.7 2.6E-05 8.9E-10 50.8 3.4 85 17-110 61-154 (176)
158 1pgv_A TMD-1, tropomodulin TMD 97.7 8.8E-05 3E-09 49.2 5.6 89 48-136 39-146 (197)
159 4gt6_A Cell surface protein; l 97.4 0.0015 5E-08 47.6 9.7 120 13-148 261-383 (394)
160 4gt6_A Cell surface protein; l 97.3 0.0012 4.3E-08 48.0 8.4 105 12-130 283-389 (394)
161 3rfe_A Platelet glycoprotein I 97.3 0.00041 1.4E-08 42.8 4.8 55 20-86 11-68 (130)
162 4h09_A Hypothetical leucine ri 97.3 0.0013 4.3E-08 47.6 8.0 100 46-148 236-338 (379)
163 4fs7_A Uncharacterized protein 97.1 0.0028 9.7E-08 46.1 8.7 95 46-145 293-390 (394)
164 4fs7_A Uncharacterized protein 97.0 0.0024 8.3E-08 46.5 7.0 99 13-124 293-393 (394)
165 2lz0_A Uncharacterized protein 77.2 4.4 0.00015 23.3 4.2 49 3-61 5-54 (100)
No 1
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.83 E-value=8.9e-21 Score=136.10 Aligned_cols=32 Identities=31% Similarity=0.504 Sum_probs=14.0
Q ss_pred CCCCCccchhhhcccCCCEEEecCCcceecCc
Q psy3049 3 DNNLTRLSGDISLLINLRTLDISNNKLRYLPS 34 (157)
Q Consensus 3 ~n~i~~l~~~~~~l~~L~~L~l~~~~l~~~~~ 34 (157)
+|.++.+|..+..+++|+.|++++|.++.+|+
T Consensus 113 ~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~ 144 (328)
T 4fcg_A 113 AAGLMELPDTMQQFAGLETLTLARNPLRALPA 144 (328)
T ss_dssp SSCCCCCCSCGGGGTTCSEEEEESCCCCCCCG
T ss_pred CCCccchhHHHhccCCCCEEECCCCccccCcH
Confidence 34444444444444444444444444444443
No 2
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.83 E-value=1.3e-20 Score=135.31 Aligned_cols=147 Identities=21% Similarity=0.329 Sum_probs=107.0
Q ss_pred CCCCCCCccchhhhcccCCCEEEecCCcceecCccccCC-------------CCCChhhhcCcccceEecccCCCc-ccc
Q psy3049 1 MNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAV-------------KNLSPDLWQFTHLTALYMNDNNLT-RLS 66 (157)
Q Consensus 1 l~~n~i~~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~-------------~~~~~~~~~~~~L~~l~l~~~~~~-~~~ 66 (157)
+++|.++.+|+.+..+++|+.|++++|.++.+|+.++.+ ..+|+.+..+++|++|++++|.+. .+|
T Consensus 88 L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p 167 (328)
T 4fcg_A 88 LRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTELP 167 (328)
T ss_dssp EESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEEEETTCCCCC
T ss_pred ccCCCchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECCCCCCccccC
Confidence 357889999988999999999999999999888766533 345777777888888888886544 445
Q ss_pred cccc---------ccccccEEeccCCCCCCCChhhhCccccceEEcCCCcccCcchhhcCcCCCcEEEccCCCCCChhHH
Q psy3049 67 GDIS---------LLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLRTLPYELGKLFQIQILGLHGNPLSKDYMK 137 (157)
Q Consensus 67 ~~~~---------~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~l~~n~l~~l~~~~~~~~~L~~l~l~~n~~~~~~~~ 137 (157)
..+. .+++|+.|++++|.++.+|..+..+++|++|++++|.++.+|..+.++++|+++++++|.+.+.+|.
T Consensus 168 ~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~ 247 (328)
T 4fcg_A 168 EPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPP 247 (328)
T ss_dssp SCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEECTTCTTCCBCCC
T ss_pred hhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCcCchhhccCCCCCEEECcCCcchhhhHH
Confidence 4433 3667777777777777777777777777777777777777766677777777777777777766666
Q ss_pred hhcCCCChHH
Q psy3049 138 IYNEPNGTQK 147 (157)
Q Consensus 138 ~~~~~~~l~~ 147 (157)
.++.++.++.
T Consensus 248 ~~~~l~~L~~ 257 (328)
T 4fcg_A 248 IFGGRAPLKR 257 (328)
T ss_dssp CTTCCCCCCE
T ss_pred HhcCCCCCCE
Confidence 6665555543
No 3
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.82 E-value=6.5e-19 Score=120.46 Aligned_cols=125 Identities=34% Similarity=0.520 Sum_probs=103.0
Q ss_pred CCCCCCCccc-hhhhcccCCCEEEecCCcceecCccccCCCCCChhhhcCcccceEecccCCCcccccc-ccccccccEE
Q psy3049 1 MNDNNLTRLS-GDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTRLSGD-ISLLINLRTL 78 (157)
Q Consensus 1 l~~n~i~~l~-~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~-~~~~~~L~~L 78 (157)
+++|.|+.++ ..+..+++|+.|++++|+++.++... +..+++|++|++++|.++.+++. +..+++|+.|
T Consensus 47 Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~---------~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L 117 (229)
T 3e6j_A 47 LHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGV---------FDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKEL 117 (229)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT---------TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred cCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhh---------cccCCCcCEEECCCCcCCccChhHhCcchhhCeE
Confidence 4677777764 34777888888888888887766542 55778899999999999887654 6788999999
Q ss_pred eccCCCCCCCChhhhCccccceEEcCCCcccCcchh-hcCcCCCcEEEccCCCCCCh
Q psy3049 79 DISNNKLRYLPSEIGDLIYLRELCLNNNNLRTLPYE-LGKLFQIQILGLHGNPLSKD 134 (157)
Q Consensus 79 ~l~~~~~~~~~~~~~~~~~l~~l~l~~n~l~~l~~~-~~~~~~L~~l~l~~n~~~~~ 134 (157)
++++|.++.+|..+..+++|++|++++|+++.++.. +..+++|+.+++++|++.+.
T Consensus 118 ~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 174 (229)
T 3e6j_A 118 FMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCE 174 (229)
T ss_dssp ECCSSCCCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTT
T ss_pred eccCCcccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCC
Confidence 999999999998888999999999999999988754 78899999999999998865
No 4
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.80 E-value=1e-18 Score=118.87 Aligned_cols=125 Identities=24% Similarity=0.356 Sum_probs=88.4
Q ss_pred CCCCCCCccch--hhhcccCCCEEEecCCcceecCccccCCCCCChhhhcCcccceEecccCCCccccc-cccccccccE
Q psy3049 1 MNDNNLTRLSG--DISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTRLSG-DISLLINLRT 77 (157)
Q Consensus 1 l~~n~i~~l~~--~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~-~~~~~~~L~~ 77 (157)
+++|.|+.+++ .+..+++|+.|++++|.++.+++. .+..+++|++|++++|.++.+++ .+..+++|++
T Consensus 39 L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~---------~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 109 (220)
T 2v70_A 39 LNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEG---------AFEGASGVNEILLTSNRLENVQHKMFKGLESLKT 109 (220)
T ss_dssp CCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTT---------TTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCE
T ss_pred cCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHH---------HhCCCCCCCEEECCCCccCccCHhHhcCCcCCCE
Confidence 34566665532 256666666666666666665542 25567778888888888877654 3677788888
Q ss_pred EeccCCCCCCC-ChhhhCccccceEEcCCCcccCc-chhhcCcCCCcEEEccCCCCCCh
Q psy3049 78 LDISNNKLRYL-PSEIGDLIYLRELCLNNNNLRTL-PYELGKLFQIQILGLHGNPLSKD 134 (157)
Q Consensus 78 L~l~~~~~~~~-~~~~~~~~~l~~l~l~~n~l~~l-~~~~~~~~~L~~l~l~~n~~~~~ 134 (157)
|++++|.++.+ |..+..+++|+.|++++|+++.+ |..+..+++|+++++++|++.+.
T Consensus 110 L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~ 168 (220)
T 2v70_A 110 LMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCN 168 (220)
T ss_dssp EECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECS
T ss_pred EECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCC
Confidence 88888888766 45677778888888888888876 45677788888888888887765
No 5
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.80 E-value=1.3e-18 Score=118.39 Aligned_cols=124 Identities=28% Similarity=0.383 Sum_probs=87.6
Q ss_pred CCCCCCccch-hhhcccCCCEEEecCCcceecCccccCCCCCChhhhcCcccceEecccCCCcccccc-ccccccccEEe
Q psy3049 2 NDNNLTRLSG-DISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTRLSGD-ISLLINLRTLD 79 (157)
Q Consensus 2 ~~n~i~~l~~-~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~-~~~~~~L~~L~ 79 (157)
++|.|+.+++ .+..+++|+.|++++|.++.+++ ..+..+++|++|++++|.++.+++. +..+++|+.|+
T Consensus 40 ~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~---------~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~ 110 (220)
T 2v9t_B 40 EQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAP---------DAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLL 110 (220)
T ss_dssp CSSCCCEECTTSSTTCTTCCEEECCSSCCCEECT---------TTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCH---------HHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEE
Confidence 4555555554 35566666666666666665432 2355677788888888888877654 56778888888
Q ss_pred ccCCCCCCC-ChhhhCccccceEEcCCCcccCcchh-hcCcCCCcEEEccCCCCCCh
Q psy3049 80 ISNNKLRYL-PSEIGDLIYLRELCLNNNNLRTLPYE-LGKLFQIQILGLHGNPLSKD 134 (157)
Q Consensus 80 l~~~~~~~~-~~~~~~~~~l~~l~l~~n~l~~l~~~-~~~~~~L~~l~l~~n~~~~~ 134 (157)
+++|.++.+ +..+..+++|+.|++++|.++.++.. +..+++|+++++++|++.+.
T Consensus 111 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~ 167 (220)
T 2v9t_B 111 LNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICD 167 (220)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECS
T ss_pred CCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCC
Confidence 888888766 45677778888888888888877654 77788888888888887654
No 6
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.79 E-value=5.9e-19 Score=122.09 Aligned_cols=134 Identities=26% Similarity=0.446 Sum_probs=78.9
Q ss_pred CCCCCCCccchh-hhcccCCCEEEecCCcceecCcc-ccCCC-------------CCC-hhhhcCcccceEecccCCCcc
Q psy3049 1 MNDNNLTRLSGD-ISLLINLRTLDISNNKLRYLPSE-IGAVK-------------NLS-PDLWQFTHLTALYMNDNNLTR 64 (157)
Q Consensus 1 l~~n~i~~l~~~-~~~l~~L~~L~l~~~~l~~~~~~-~~~~~-------------~~~-~~~~~~~~L~~l~l~~~~~~~ 64 (157)
+++|.++.+++. +..+++|+.|++++|.++.+++. +..++ .++ ..+..+++|++|++++|.++.
T Consensus 42 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 121 (251)
T 3m19_A 42 LQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKS 121 (251)
T ss_dssp CTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred ccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCC
Confidence 456777766653 77778888888888877765543 22111 112 223455566666666666665
Q ss_pred cccc-ccccccccEEeccCCCCCCCCh-hhhCccccceEEcCCCcccCcch-hhcCcCCCcEEEccCCCCCCh
Q psy3049 65 LSGD-ISLLINLRTLDISNNKLRYLPS-EIGDLIYLRELCLNNNNLRTLPY-ELGKLFQIQILGLHGNPLSKD 134 (157)
Q Consensus 65 ~~~~-~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~l~~l~l~~n~l~~l~~-~~~~~~~L~~l~l~~n~~~~~ 134 (157)
+++. +..+++|+.|++++|.++.++. .+..+++|++|++++|+++.++. .+..+++|+++++++|++.+.
T Consensus 122 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 122 LPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred cChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 5433 3556666666666666665544 45556666666666666665543 355666666666666666543
No 7
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.79 E-value=3.6e-18 Score=120.63 Aligned_cols=135 Identities=30% Similarity=0.365 Sum_probs=93.6
Q ss_pred CCCCCccchhhhcccCCCEEEecCCcceecCccccCCCCCChhhhcCcccceEecccCCCcccccc-ccccccccEEecc
Q psy3049 3 DNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTRLSGD-ISLLINLRTLDIS 81 (157)
Q Consensus 3 ~n~i~~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~-~~~~~~L~~L~l~ 81 (157)
+|.|+.+|..+..+++|+.|++++|+++.+++ ..+..+++|++|++++|.++.+++. +..+++|+.|+++
T Consensus 86 ~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~---------~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~ 156 (290)
T 1p9a_G 86 HNQLQSLPLLGQTLPALTVLDVSFNRLTSLPL---------GALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLA 156 (290)
T ss_dssp SSCCSSCCCCTTTCTTCCEEECCSSCCCCCCS---------STTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred CCcCCcCchhhccCCCCCEEECCCCcCcccCH---------HHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECC
Confidence 34444444444444444444444444444332 2356778888888888888877643 5678888899998
Q ss_pred CCCCCCCChh-hhCccccceEEcCCCcccCcchhhcCcCCCcEEEccCCCCCChhHHhhcCCCChHHHHHHHHh
Q psy3049 82 NNKLRYLPSE-IGDLIYLRELCLNNNNLRTLPYELGKLFQIQILGLHGNPLSKDYMKIYNEPNGTQKLLSYLLD 154 (157)
Q Consensus 82 ~~~~~~~~~~-~~~~~~l~~l~l~~n~l~~l~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~l~~l~~~~~~ 154 (157)
+|.++.+|.. +..+++|+.|++++|+++.+|..+...++|+++++++|++.+. +.+..+..|+.+
T Consensus 157 ~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np~~C~--------c~~~~l~~wl~~ 222 (290)
T 1p9a_G 157 NNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWLCN--------CEILYFRRWLQD 222 (290)
T ss_dssp TSCCSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCBCCS--------GGGHHHHHHHHH
T ss_pred CCcCCccCHHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCCccCc--------CccHHHHHHHHh
Confidence 8888888764 5668888999999998888888888888899999999988765 344555556543
No 8
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.78 E-value=1e-18 Score=118.83 Aligned_cols=134 Identities=20% Similarity=0.351 Sum_probs=115.6
Q ss_pred CCCCCCccchhhhcccCCCEEEecCCcceecCccccCCCCCChhhhcCcccceEecccCCCccc-cccccccccccEEec
Q psy3049 2 NDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTRL-SGDISLLINLRTLDI 80 (157)
Q Consensus 2 ~~n~i~~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~-~~~~~~~~~L~~L~l 80 (157)
+++.++.+|..+. ..++.|++++|.++.+++. .+..+++|+.|++++|.++.+ +..+..+++|++|++
T Consensus 19 ~~~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~---------~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L 87 (220)
T 2v9t_B 19 RGKGLTEIPTNLP--ETITEIRLEQNTIKVIPPG---------AFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVL 87 (220)
T ss_dssp TTSCCSSCCSSCC--TTCCEEECCSSCCCEECTT---------SSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEEC
T ss_pred CCCCcCcCCCccC--cCCCEEECCCCcCCCcCHh---------HhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEEC
Confidence 5788899987654 6899999999999988764 256788999999999999977 567889999999999
Q ss_pred cCCCCCCCChh-hhCccccceEEcCCCcccCcc-hhhcCcCCCcEEEccCCCCCChhHHhhcCCCChH
Q psy3049 81 SNNKLRYLPSE-IGDLIYLRELCLNNNNLRTLP-YELGKLFQIQILGLHGNPLSKDYMKIYNEPNGTQ 146 (157)
Q Consensus 81 ~~~~~~~~~~~-~~~~~~l~~l~l~~n~l~~l~-~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~l~ 146 (157)
++|.++.+|.. +..+++|+.|++++|.++.++ ..+..+++|+++++++|.+.+..+..+..++.++
T Consensus 88 s~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 155 (220)
T 2v9t_B 88 YGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQ 155 (220)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCC
T ss_pred CCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCC
Confidence 99999998764 678999999999999999875 5688999999999999999998888787665544
No 9
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.78 E-value=1.4e-18 Score=118.87 Aligned_cols=134 Identities=25% Similarity=0.353 Sum_probs=114.8
Q ss_pred CCCCCCccchhhhcccCCCEEEecCCcceecCccccCCCCCChhhhcCcccceEecccCCCccccc-cccccccccEEec
Q psy3049 2 NDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTRLSG-DISLLINLRTLDI 80 (157)
Q Consensus 2 ~~n~i~~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~-~~~~~~~L~~L~l 80 (157)
+++.++.+|..+. ++++.|++++|.++.+++. .+..+++|++|++++|.++.++. .+..+++|+.|++
T Consensus 27 ~~~~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~---------~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~L 95 (229)
T 3e6j_A 27 RSKRHASVPAGIP--TNAQILYLHDNQITKLEPG---------VFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDL 95 (229)
T ss_dssp TTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTT---------TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred cCCCcCccCCCCC--CCCCEEEcCCCccCccCHH---------HhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEEC
Confidence 5678888887653 8899999999999987543 25678899999999999998875 4688999999999
Q ss_pred cCCCCCCCCh-hhhCccccceEEcCCCcccCcchhhcCcCCCcEEEccCCCCCChhHHhhcCCCChH
Q psy3049 81 SNNKLRYLPS-EIGDLIYLRELCLNNNNLRTLPYELGKLFQIQILGLHGNPLSKDYMKIYNEPNGTQ 146 (157)
Q Consensus 81 ~~~~~~~~~~-~~~~~~~l~~l~l~~n~l~~l~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~l~ 146 (157)
++|.++.++. .+..+++|+.|++++|+++.+|..+..+++|+++++++|.+.+..+..+..++.++
T Consensus 96 s~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 162 (229)
T 3e6j_A 96 GTNQLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLT 162 (229)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred CCCcCCccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCC
Confidence 9999998865 46789999999999999999999999999999999999999988777776655444
No 10
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.78 E-value=1.2e-17 Score=115.51 Aligned_cols=109 Identities=31% Similarity=0.457 Sum_probs=70.3
Q ss_pred CCCCCCCccchh-hhcccCCCEEEecCCcceecCccc-cCC-------------CCCChh-hhcCcccceEecccCCCcc
Q psy3049 1 MNDNNLTRLSGD-ISLLINLRTLDISNNKLRYLPSEI-GAV-------------KNLSPD-LWQFTHLTALYMNDNNLTR 64 (157)
Q Consensus 1 l~~n~i~~l~~~-~~~l~~L~~L~l~~~~l~~~~~~~-~~~-------------~~~~~~-~~~~~~L~~l~l~~~~~~~ 64 (157)
+++|.|+.+++. +..+++|+.|++++|.++.+++.. ..+ ..+++. +..+++|++|++++|.++.
T Consensus 66 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 145 (251)
T 3m19_A 66 LDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQS 145 (251)
T ss_dssp CTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred CCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCc
Confidence 355666665544 566666666666666666555321 211 122333 4566777888888887777
Q ss_pred ccc-cccccccccEEeccCCCCCCCCh-hhhCccccceEEcCCCccc
Q psy3049 65 LSG-DISLLINLRTLDISNNKLRYLPS-EIGDLIYLRELCLNNNNLR 109 (157)
Q Consensus 65 ~~~-~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~l~~l~l~~n~l~ 109 (157)
+++ .+..+++|+.|++++|.++.++. .+..+++|+.+++++|.+.
T Consensus 146 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 192 (251)
T 3m19_A 146 IPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFD 192 (251)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC
T ss_pred cCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCcee
Confidence 654 46677778888888887776654 5666777788888877776
No 11
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.77 E-value=1.2e-18 Score=136.40 Aligned_cols=130 Identities=36% Similarity=0.611 Sum_probs=109.9
Q ss_pred CCCCCccchhhhcccCCCEEEecCCcceecCccccCCCCCChhhhcCcccceEecccCCCccccccccccccccEEeccC
Q psy3049 3 DNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTRLSGDISLLINLRTLDISN 82 (157)
Q Consensus 3 ~n~i~~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~ 82 (157)
.|.+...+..+..+..|+.|++++|.+..+|+. +..+++|++|++++|.++.+|..++.+.+|+.|++++
T Consensus 210 ~n~~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~----------~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~ 279 (727)
T 4b8c_D 210 ENRMVMPKDSKYDDQLWHALDLSNLQIFNISAN----------IFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSH 279 (727)
T ss_dssp ------------CCCCCCEEECTTSCCSCCCGG----------GGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTT
T ss_pred ccceecChhhhccCCCCcEEECCCCCCCCCChh----------hcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcC
Confidence 344444455688999999999999999988765 3467899999999999999998899999999999999
Q ss_pred CCCCCCChhhhCccccceEEcCCCcccCcchhhcCcCCCcEEEccCCCCCChhHHhhcCC
Q psy3049 83 NKLRYLPSEIGDLIYLRELCLNNNNLRTLPYELGKLFQIQILGLHGNPLSKDYMKIYNEP 142 (157)
Q Consensus 83 ~~~~~~~~~~~~~~~l~~l~l~~n~l~~l~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~ 142 (157)
|.++.+|..+..+++|++|++++|.++.+|..++.+++|++|+|++|.+.+.++..+...
T Consensus 280 N~l~~lp~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~ 339 (727)
T 4b8c_D 280 NRLTSLPAELGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEK 339 (727)
T ss_dssp SCCSSCCSSGGGGTTCSEEECCSSCCCCCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHH
T ss_pred CcCCccChhhcCCCCCCEEECCCCCCCccChhhhcCCCccEEeCCCCccCCCChHHHhhc
Confidence 999999999999999999999999999999989999999999999999999999998643
No 12
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.77 E-value=1.6e-17 Score=111.76 Aligned_cols=136 Identities=29% Similarity=0.479 Sum_probs=105.2
Q ss_pred CCCCCCCccchh-hhcccCCCEEEecCCcceecCccccCCCCCChhhhcCcccceEecccCCCcccccc-ccccccccEE
Q psy3049 1 MNDNNLTRLSGD-ISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTRLSGD-ISLLINLRTL 78 (157)
Q Consensus 1 l~~n~i~~l~~~-~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~-~~~~~~L~~L 78 (157)
+++|.++.+++. +..+++|+.|++++|.++.+++.. +..+++|++|++++|.++.++.. +..+++|++|
T Consensus 35 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~---------~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 105 (208)
T 2o6s_A 35 LETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGV---------FNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKEL 105 (208)
T ss_dssp CCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTT---------TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred cCCCccCcCChhhhcccccCcEEECCCCccCccChhh---------cCCCCCcCEEECCCCcCCccCHhHhcCccCCCEE
Confidence 466777777655 677788888888888777665532 45678899999999999877654 5788899999
Q ss_pred eccCCCCCCCCh-hhhCccccceEEcCCCcccCcchh-hcCcCCCcEEEccCCCCCChhHHhhcCCCChHHHHHHH
Q psy3049 79 DISNNKLRYLPS-EIGDLIYLRELCLNNNNLRTLPYE-LGKLFQIQILGLHGNPLSKDYMKIYNEPNGTQKLLSYL 152 (157)
Q Consensus 79 ~l~~~~~~~~~~-~~~~~~~l~~l~l~~n~l~~l~~~-~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~l~~l~~~~ 152 (157)
++++|.++.++. .+..+++|+.+++++|.++.++.. +..+++|+++++++|++.+. ++.++.+-.+.
T Consensus 106 ~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~L~~~~ 174 (208)
T 2o6s_A 106 ALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWI 174 (208)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCCC-------TTTTHHHHHHH
T ss_pred EcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeecC-------CCCHHHHHHHH
Confidence 999999988765 467889999999999999988765 78889999999999988754 34556554443
No 13
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.77 E-value=1.5e-18 Score=133.14 Aligned_cols=131 Identities=24% Similarity=0.337 Sum_probs=110.8
Q ss_pred CCCCCCCccch-hhhcccCCCEEEecCCcceecCccccCCCCCChhhhcCcccceEecccCCCccccc-cccccccccEE
Q psy3049 1 MNDNNLTRLSG-DISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTRLSG-DISLLINLRTL 78 (157)
Q Consensus 1 l~~n~i~~l~~-~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~-~~~~~~~L~~L 78 (157)
|++|+|+.+++ +|.++++|+.|++++|+++.++++. |..+++|++|++++|+++.+++ .+..+++|++|
T Consensus 59 Ls~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~---------f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L 129 (635)
T 4g8a_A 59 LSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGA---------YQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKL 129 (635)
T ss_dssp CTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTT---------TTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEE
T ss_pred eeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhH---------hcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEE
Confidence 57888988885 4888999999999999988887642 6678899999999999998875 57889999999
Q ss_pred eccCCCCCCCCh-hhhCccccceEEcCCCcccC--cchhhcCcCCCcEEEccCCCCCChhHHhhc
Q psy3049 79 DISNNKLRYLPS-EIGDLIYLRELCLNNNNLRT--LPYELGKLFQIQILGLHGNPLSKDYMKIYN 140 (157)
Q Consensus 79 ~l~~~~~~~~~~-~~~~~~~l~~l~l~~n~l~~--l~~~~~~~~~L~~l~l~~n~~~~~~~~~~~ 140 (157)
++++|.++.++. .+..+++|++|++++|.++. +|..++.+++|+++++++|.+.+..+..+.
T Consensus 130 ~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~ 194 (635)
T 4g8a_A 130 VAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLR 194 (635)
T ss_dssp ECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGH
T ss_pred ECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcccccccccccc
Confidence 999999988865 57889999999999999984 466788899999999999999887776664
No 14
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.77 E-value=1e-17 Score=111.82 Aligned_cols=134 Identities=28% Similarity=0.442 Sum_probs=112.4
Q ss_pred CCCCCCCccchhhhcccCCCEEEecCCcceecCccccCCCCCChhhhcCcccceEecccCCCccccc-cccccccccEEe
Q psy3049 1 MNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTRLSG-DISLLINLRTLD 79 (157)
Q Consensus 1 l~~n~i~~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~-~~~~~~~L~~L~ 79 (157)
+++|.++.+|..+. ++++.|++++|.++.+|+. +..+++|+.|++++|.++.+++ .+..+++|+.|+
T Consensus 17 ~~~~~l~~ip~~~~--~~l~~L~L~~n~i~~ip~~----------~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ 84 (193)
T 2wfh_A 17 CSNKGLKVLPKGIP--RDVTELYLDGNQFTLVPKE----------LSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLI 84 (193)
T ss_dssp CTTSCCSSCCSCCC--TTCCEEECCSSCCCSCCGG----------GGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred cCCCCCCcCCCCCC--CCCCEEECCCCcCchhHHH----------hhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEE
Confidence 36788999987653 6899999999999977743 5678899999999999998764 588999999999
Q ss_pred ccCCCCCCCCh-hhhCccccceEEcCCCcccCcchh-hcCcCCCcEEEccCCCCCChhHHhhcCCCChHHHHHHHHh
Q psy3049 80 ISNNKLRYLPS-EIGDLIYLRELCLNNNNLRTLPYE-LGKLFQIQILGLHGNPLSKDYMKIYNEPNGTQKLLSYLLD 154 (157)
Q Consensus 80 l~~~~~~~~~~-~~~~~~~l~~l~l~~n~l~~l~~~-~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~l~~l~~~~~~ 154 (157)
+++|.++.++. .+..+++|+.|++++|.++.+|.. +..+++|+++++++|++.+. +.++.+..|+..
T Consensus 85 Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~--------c~l~~l~~~~~~ 153 (193)
T 2wfh_A 85 LSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCD--------CNMQWLSDWVKS 153 (193)
T ss_dssp CCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEECS--------GGGHHHHHHHHH
T ss_pred CCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeecC--------CcCHHHHHHHHh
Confidence 99999998865 688999999999999999998865 88999999999999999865 345555555543
No 15
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.77 E-value=3.2e-18 Score=116.41 Aligned_cols=136 Identities=15% Similarity=0.231 Sum_probs=115.2
Q ss_pred CCCCCCCccchhhhcccCCCEEEecCCcceecCccccCCCCCChhhhcCcccceEecccCCCccccc-cccccccccEEe
Q psy3049 1 MNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTRLSG-DISLLINLRTLD 79 (157)
Q Consensus 1 l~~n~i~~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~-~~~~~~~L~~L~ 79 (157)
+++|.++.+|..+. ..++.|++++|.++.+++.- .+..+++|++|++++|.++.+++ .+..+++|++|+
T Consensus 18 ~s~n~l~~iP~~~~--~~~~~L~L~~N~l~~~~~~~--------~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~ 87 (220)
T 2v70_A 18 CSNQKLNKIPEHIP--QYTAELRLNNNEFTVLEATG--------IFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEIL 87 (220)
T ss_dssp CCSSCCSSCCSCCC--TTCSEEECCSSCCCEECCCC--------CGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred eCCCCcccCccCCC--CCCCEEEcCCCcCCccCchh--------hhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEE
Confidence 46788999987653 35689999999999875321 25678899999999999998765 688999999999
Q ss_pred ccCCCCCCCCh-hhhCccccceEEcCCCcccCc-chhhcCcCCCcEEEccCCCCCChhHHhhcCCCChH
Q psy3049 80 ISNNKLRYLPS-EIGDLIYLRELCLNNNNLRTL-PYELGKLFQIQILGLHGNPLSKDYMKIYNEPNGTQ 146 (157)
Q Consensus 80 l~~~~~~~~~~-~~~~~~~l~~l~l~~n~l~~l-~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~l~ 146 (157)
+++|.++.++. .+..+++|+.|++++|+++.+ |..+..+++|+++++++|.+.+..+..+..+..++
T Consensus 88 Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 156 (220)
T 2v70_A 88 LTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLS 156 (220)
T ss_dssp CCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCC
T ss_pred CCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCC
Confidence 99999998865 588899999999999999987 45689999999999999999999888888776654
No 16
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.77 E-value=2.8e-18 Score=119.86 Aligned_cols=140 Identities=31% Similarity=0.439 Sum_probs=73.8
Q ss_pred CCCCCCCccch-hhhcccCCCEEEecCCcceecCccc-cCCC-------------CCCh-hhhcCcccceEecccCCCcc
Q psy3049 1 MNDNNLTRLSG-DISLLINLRTLDISNNKLRYLPSEI-GAVK-------------NLSP-DLWQFTHLTALYMNDNNLTR 64 (157)
Q Consensus 1 l~~n~i~~l~~-~~~~l~~L~~L~l~~~~l~~~~~~~-~~~~-------------~~~~-~~~~~~~L~~l~l~~~~~~~ 64 (157)
+++|.|+.+++ .+..+++|+.|++++|.++.+++.. ..++ .++. .+..+++|++|++++|.++.
T Consensus 44 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 123 (270)
T 2o6q_A 44 LQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKS 123 (270)
T ss_dssp CCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCC
T ss_pred CcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCe
Confidence 35566666654 3666666666666666666555432 1111 1122 23445556666666666555
Q ss_pred ccc-cccccccccEEeccCCCCCCCCh-hhhCccccceEEcCCCcccCcchh-hcCcCCCcEEEccCCCCCChhHHhhc
Q psy3049 65 LSG-DISLLINLRTLDISNNKLRYLPS-EIGDLIYLRELCLNNNNLRTLPYE-LGKLFQIQILGLHGNPLSKDYMKIYN 140 (157)
Q Consensus 65 ~~~-~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~l~~l~l~~n~l~~l~~~-~~~~~~L~~l~l~~n~~~~~~~~~~~ 140 (157)
+++ .+..+++|++|++++|.++.++. .+..+++|+.|++++|.++.++.. +..+++|+++++++|.+.+..+..+.
T Consensus 124 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 202 (270)
T 2o6q_A 124 LPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFD 202 (270)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTT
T ss_pred eCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhc
Confidence 432 24455556666666665555543 244555555555555555555432 45555555555555555554444443
No 17
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.77 E-value=3e-18 Score=119.88 Aligned_cols=87 Identities=34% Similarity=0.499 Sum_probs=45.8
Q ss_pred hcCcccceEecccCCCcccccc-ccccccccEEeccCCCCCCCCh-hhhCccccceEEcCCCcccCcchh-hcCcCCCcE
Q psy3049 47 WQFTHLTALYMNDNNLTRLSGD-ISLLINLRTLDISNNKLRYLPS-EIGDLIYLRELCLNNNNLRTLPYE-LGKLFQIQI 123 (157)
Q Consensus 47 ~~~~~L~~l~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~l~~l~l~~n~l~~l~~~-~~~~~~L~~ 123 (157)
..+++|++|++++|.++.+++. +..+++|+.|++++|.++.++. .+..+++|++|++++|.++.++.. +..+++|++
T Consensus 130 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 209 (272)
T 3rfs_A 130 DKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQY 209 (272)
T ss_dssp TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCE
T ss_pred ccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCE
Confidence 3445555555555555544332 3455555555555555554433 234555555555555555544433 455555555
Q ss_pred EEccCCCCCC
Q psy3049 124 LGLHGNPLSK 133 (157)
Q Consensus 124 l~l~~n~~~~ 133 (157)
+++++|++.+
T Consensus 210 L~l~~N~~~~ 219 (272)
T 3rfs_A 210 IWLHDNPWDC 219 (272)
T ss_dssp EECCSSCBCC
T ss_pred EEccCCCccc
Confidence 5555555553
No 18
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.76 E-value=4.7e-18 Score=119.46 Aligned_cols=100 Identities=25% Similarity=0.292 Sum_probs=51.3
Q ss_pred hhcCcccceEecccCCCccccc-cccccccccEEeccCCCCCCCCh-hhhCccccceEEcCCCcccCc-chhhcCcCCCc
Q psy3049 46 LWQFTHLTALYMNDNNLTRLSG-DISLLINLRTLDISNNKLRYLPS-EIGDLIYLRELCLNNNNLRTL-PYELGKLFQIQ 122 (157)
Q Consensus 46 ~~~~~~L~~l~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~l~~l~l~~n~l~~l-~~~~~~~~~L~ 122 (157)
+..+++|++|++++|.++.++. .+..+++|+.|++++|.++.++. .+..+++|+.+++++|.++.+ |..+.++++|+
T Consensus 125 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 204 (285)
T 1ozn_A 125 FRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLM 204 (285)
T ss_dssp TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCC
T ss_pred hhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCccccc
Confidence 3344445555555555444432 23445555555555555554433 344455555555555555543 34455556666
Q ss_pred EEEccCCCCCChhHHhhcCCCCh
Q psy3049 123 ILGLHGNPLSKDYMKIYNEPNGT 145 (157)
Q Consensus 123 ~l~l~~n~~~~~~~~~~~~~~~l 145 (157)
++++++|.+.+..++.+..++.+
T Consensus 205 ~L~l~~n~l~~~~~~~~~~l~~L 227 (285)
T 1ozn_A 205 TLYLFANNLSALPTEALAPLRAL 227 (285)
T ss_dssp EEECCSSCCSCCCHHHHTTCTTC
T ss_pred EeeCCCCcCCcCCHHHcccCccc
Confidence 66666666665555555544433
No 19
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.76 E-value=1.3e-17 Score=111.13 Aligned_cols=125 Identities=22% Similarity=0.344 Sum_probs=107.0
Q ss_pred CCCCCCCccchhhhcccCCCEEEecCCcceecCccccCCCCCChhhhcCcccceEecccCCCccc-cccccccccccEEe
Q psy3049 1 MNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTRL-SGDISLLINLRTLD 79 (157)
Q Consensus 1 l~~n~i~~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~-~~~~~~~~~L~~L~ 79 (157)
+++|.++.+|..+.. +++.|++++|.++.+++.. .+..+++|++|++++|.++.+ +..+..+++|+.|+
T Consensus 15 ~s~~~l~~ip~~~~~--~l~~L~l~~n~i~~~~~~~--------~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 84 (192)
T 1w8a_A 15 CTGRGLKEIPRDIPL--HTTELLLNDNELGRISSDG--------LFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQ 84 (192)
T ss_dssp CTTSCCSSCCSCCCT--TCSEEECCSCCCCSBCCSC--------SGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEE
T ss_pred cCCCCcCcCccCCCC--CCCEEECCCCcCCccCCcc--------ccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEE
Confidence 468899999976643 8999999999999877531 155778999999999999977 56788999999999
Q ss_pred ccCCCCCCCCh-hhhCccccceEEcCCCcccCc-chhhcCcCCCcEEEccCCCCCChh
Q psy3049 80 ISNNKLRYLPS-EIGDLIYLRELCLNNNNLRTL-PYELGKLFQIQILGLHGNPLSKDY 135 (157)
Q Consensus 80 l~~~~~~~~~~-~~~~~~~l~~l~l~~n~l~~l-~~~~~~~~~L~~l~l~~n~~~~~~ 135 (157)
+++|.++.++. .+..+++|++|++++|+++.+ |..+..+++|+++++++|++.+..
T Consensus 85 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c 142 (192)
T 1w8a_A 85 LGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNC 142 (192)
T ss_dssp CCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSG
T ss_pred CCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcC
Confidence 99999997754 578899999999999999966 566899999999999999999763
No 20
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.76 E-value=3.2e-18 Score=120.91 Aligned_cols=134 Identities=28% Similarity=0.305 Sum_probs=90.3
Q ss_pred CCCCCCCccch-hhhcccCCCEEEecCCcceecCccc------------cCCCCCChhhhcCcccceEecccCCCcccc-
Q psy3049 1 MNDNNLTRLSG-DISLLINLRTLDISNNKLRYLPSEI------------GAVKNLSPDLWQFTHLTALYMNDNNLTRLS- 66 (157)
Q Consensus 1 l~~n~i~~l~~-~~~~l~~L~~L~l~~~~l~~~~~~~------------~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~- 66 (157)
+++|.|+.+++ .+..+++|+.|++++|.++.++... ..+..+|..+..+++|++|++++|.++.++
T Consensus 38 L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~ 117 (290)
T 1p9a_G 38 LSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPL 117 (290)
T ss_dssp CTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECCSCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCS
T ss_pred cCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCCCCCCcCCEEECCCCcCCcCchhhccCCCCCEEECCCCcCcccCH
Confidence 46777776654 4778888888888888887665431 012234445556667777777777777665
Q ss_pred ccccccccccEEeccCCCCCCCCh-hhhCccccceEEcCCCcccCcchh-hcCcCCCcEEEccCCCCCCh
Q psy3049 67 GDISLLINLRTLDISNNKLRYLPS-EIGDLIYLRELCLNNNNLRTLPYE-LGKLFQIQILGLHGNPLSKD 134 (157)
Q Consensus 67 ~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~l~~l~l~~n~l~~l~~~-~~~~~~L~~l~l~~n~~~~~ 134 (157)
..+..+++|++|++++|.++.+|. .+..+++|+.|++++|+++.+|.. +..+++|+++++++|.+...
T Consensus 118 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~i 187 (290)
T 1p9a_G 118 GALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTI 187 (290)
T ss_dssp STTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCC
T ss_pred HHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCCcc
Confidence 346667777777777777776654 345667777777777777777654 45677777777777777744
No 21
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.76 E-value=4.1e-18 Score=119.04 Aligned_cols=145 Identities=28% Similarity=0.428 Sum_probs=107.4
Q ss_pred CCCCCCCccchhhhcccCCCEEEecCCcceecCc-cccCC-------------CCCChh-hhcCcccceEecccCCCccc
Q psy3049 1 MNDNNLTRLSGDISLLINLRTLDISNNKLRYLPS-EIGAV-------------KNLSPD-LWQFTHLTALYMNDNNLTRL 65 (157)
Q Consensus 1 l~~n~i~~l~~~~~~l~~L~~L~l~~~~l~~~~~-~~~~~-------------~~~~~~-~~~~~~L~~l~l~~~~~~~~ 65 (157)
++++.++.+|..+. ++++.|++++|.++.+++ .+..+ ..++.. +..+++|++|++++|.++.+
T Consensus 23 ~~~~~l~~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~ 100 (270)
T 2o6q_A 23 CSSKKLTAIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQAL 100 (270)
T ss_dssp CTTSCCSSCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCC
T ss_pred ccCCCCCccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcC
Confidence 36788898887654 689999999999998875 33322 223433 35677788888888888776
Q ss_pred cc-cccccccccEEeccCCCCCCCCh-hhhCccccceEEcCCCcccCcchh-hcCcCCCcEEEccCCCCCChhHHhhcCC
Q psy3049 66 SG-DISLLINLRTLDISNNKLRYLPS-EIGDLIYLRELCLNNNNLRTLPYE-LGKLFQIQILGLHGNPLSKDYMKIYNEP 142 (157)
Q Consensus 66 ~~-~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~l~~l~l~~n~l~~l~~~-~~~~~~L~~l~l~~n~~~~~~~~~~~~~ 142 (157)
+. .+..+++|++|++++|.++.++. .+..+++|++|++++|.++.++.. +..+++|+++++++|.+.+..+..+..+
T Consensus 101 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 180 (270)
T 2o6q_A 101 PIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKL 180 (270)
T ss_dssp CTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTC
T ss_pred CHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccC
Confidence 54 45677888888888888877654 467788888888888888877755 6788888888888888888777777666
Q ss_pred CChHH
Q psy3049 143 NGTQK 147 (157)
Q Consensus 143 ~~l~~ 147 (157)
+.++.
T Consensus 181 ~~L~~ 185 (270)
T 2o6q_A 181 TELKT 185 (270)
T ss_dssp TTCCE
T ss_pred CCcCE
Confidence 55543
No 22
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.76 E-value=6e-18 Score=120.74 Aligned_cols=141 Identities=21% Similarity=0.291 Sum_probs=113.9
Q ss_pred CCCCCCCccch-hhhcccCCCEEEecCCcceecCccccCCCCCChhh-hcCcccceEecccCCCccccccccccccccEE
Q psy3049 1 MNDNNLTRLSG-DISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDL-WQFTHLTALYMNDNNLTRLSGDISLLINLRTL 78 (157)
Q Consensus 1 l~~n~i~~l~~-~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~-~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L 78 (157)
+++|.++.+++ .+..+++|+.|++++|.++.++.. .+ ..+++|++|++++|.++.++.. ..+++|+.|
T Consensus 127 l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~---------~~~~~l~~L~~L~L~~N~l~~~~~~-~~l~~L~~L 196 (317)
T 3o53_A 127 LANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFA---------ELAASSDTLEHLNLQYNFIYDVKGQ-VVFAKLKTL 196 (317)
T ss_dssp CCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGG---------GGGGGTTTCCEEECTTSCCCEEECC-CCCTTCCEE
T ss_pred CCCCCCCCccchhhhccCCCCEEECCCCCCCcccHH---------HHhhccCcCCEEECCCCcCcccccc-cccccCCEE
Confidence 35566666654 366677777777777777654322 23 3568899999999999887543 358899999
Q ss_pred eccCCCCCCCChhhhCccccceEEcCCCcccCcchhhcCcCCCcEEEccCCCCC-ChhHHhhcCCCChHHHHHH
Q psy3049 79 DISNNKLRYLPSEIGDLIYLRELCLNNNNLRTLPYELGKLFQIQILGLHGNPLS-KDYMKIYNEPNGTQKLLSY 151 (157)
Q Consensus 79 ~l~~~~~~~~~~~~~~~~~l~~l~l~~n~l~~l~~~~~~~~~L~~l~l~~n~~~-~~~~~~~~~~~~l~~l~~~ 151 (157)
++++|.++.+|..+..+++|+.+++++|+++.+|..+..+++|+++++++|++. +..+..+..++.++.+...
T Consensus 197 ~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~ 270 (317)
T 3o53_A 197 DLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (317)
T ss_dssp ECCSSCCCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHH
T ss_pred ECCCCcCCcchhhhcccCcccEEECcCCcccchhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECC
Confidence 999999999988899999999999999999999998999999999999999999 7888888888888877544
No 23
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.76 E-value=5.7e-18 Score=119.04 Aligned_cols=147 Identities=20% Similarity=0.303 Sum_probs=110.6
Q ss_pred CCCCCCCccchh-hhcccCCCEEEecCCcceecC-ccccCC--------------CCC-ChhhhcCcccceEecccCCCc
Q psy3049 1 MNDNNLTRLSGD-ISLLINLRTLDISNNKLRYLP-SEIGAV--------------KNL-SPDLWQFTHLTALYMNDNNLT 63 (157)
Q Consensus 1 l~~n~i~~l~~~-~~~l~~L~~L~l~~~~l~~~~-~~~~~~--------------~~~-~~~~~~~~~L~~l~l~~~~~~ 63 (157)
+++|.|+.+++. +..+++|+.|++++|.++.++ ..+..+ ..+ +..+..+++|++|++++|.++
T Consensus 39 l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~ 118 (285)
T 1ozn_A 39 LHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ 118 (285)
T ss_dssp CTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCC
T ss_pred eeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCC
Confidence 467788877754 788888888888888888763 333322 222 345667788888888888888
Q ss_pred cc-cccccccccccEEeccCCCCCCCCh-hhhCccccceEEcCCCcccCcchh-hcCcCCCcEEEccCCCCCChhHHhhc
Q psy3049 64 RL-SGDISLLINLRTLDISNNKLRYLPS-EIGDLIYLRELCLNNNNLRTLPYE-LGKLFQIQILGLHGNPLSKDYMKIYN 140 (157)
Q Consensus 64 ~~-~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~l~~l~l~~n~l~~l~~~-~~~~~~L~~l~l~~n~~~~~~~~~~~ 140 (157)
.+ +..+..+++|++|++++|.++.++. .+..+++|+.|++++|.++.++.. +..+++|+++++++|.+.+..+..+.
T Consensus 119 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 198 (285)
T 1ozn_A 119 ELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFR 198 (285)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTT
T ss_pred EECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHcc
Confidence 66 3456778888888888888887765 477788888999988888877754 77888899999999988888788887
Q ss_pred CCCChHH
Q psy3049 141 EPNGTQK 147 (157)
Q Consensus 141 ~~~~l~~ 147 (157)
.++.++.
T Consensus 199 ~l~~L~~ 205 (285)
T 1ozn_A 199 DLGRLMT 205 (285)
T ss_dssp TCTTCCE
T ss_pred CcccccE
Confidence 7666543
No 24
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.74 E-value=1.7e-17 Score=120.34 Aligned_cols=135 Identities=30% Similarity=0.407 Sum_probs=104.4
Q ss_pred CCCCCCCccchh-hh-cccCCCEEEecCCcceecCccccCCCCCChhhhcCcccceEecccCCCccccc-cccccccccE
Q psy3049 1 MNDNNLTRLSGD-IS-LLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTRLSG-DISLLINLRT 77 (157)
Q Consensus 1 l~~n~i~~l~~~-~~-~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~-~~~~~~~L~~ 77 (157)
|++|.|+.++.. +. .+++|+.|++++|+++.+++. .+..+++|++|++++|.++.+++ .+..+.+|+.
T Consensus 46 Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~---------~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 116 (361)
T 2xot_A 46 LSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSE---------AFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEV 116 (361)
T ss_dssp CCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTT---------TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCE
T ss_pred CCCCCCCccChhhhhhcccccCEEECCCCcCCccChh---------hccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCE
Confidence 456666666654 44 677777777777777766543 36677889999999999987764 5778899999
Q ss_pred EeccCCCCCCC-ChhhhCccccceEEcCCCcccCcchhh----cCcCCCcEEEccCCCCCChhHHhhcCCCC
Q psy3049 78 LDISNNKLRYL-PSEIGDLIYLRELCLNNNNLRTLPYEL----GKLFQIQILGLHGNPLSKDYMKIYNEPNG 144 (157)
Q Consensus 78 L~l~~~~~~~~-~~~~~~~~~l~~l~l~~n~l~~l~~~~----~~~~~L~~l~l~~n~~~~~~~~~~~~~~~ 144 (157)
|++++|.++.+ +..+..+++|+.|++++|+++.+|..+ ..+++|++|++++|.+.+..++.+..++.
T Consensus 117 L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~ 188 (361)
T 2xot_A 117 LLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPA 188 (361)
T ss_dssp EECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCH
T ss_pred EECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccH
Confidence 99999999876 557888899999999999999988764 56899999999999999887777665543
No 25
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.74 E-value=1.2e-17 Score=116.94 Aligned_cols=132 Identities=25% Similarity=0.359 Sum_probs=97.4
Q ss_pred CCCCCCCccch-hhhcccCCCEEEecCCcceecCccccCCCCCChhhhcCcccceEecccCCCcccc-ccccccccccEE
Q psy3049 1 MNDNNLTRLSG-DISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTRLS-GDISLLINLRTL 78 (157)
Q Consensus 1 l~~n~i~~l~~-~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~-~~~~~~~~L~~L 78 (157)
+++|.|+.+++ .+..+++|+.|++++|.++.+++. .+..+++|++|++++|.++.++ ..+..+++|++|
T Consensus 35 ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~---------~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 105 (276)
T 2z62_A 35 LSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDG---------AYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKL 105 (276)
T ss_dssp CTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTT---------TTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEE
T ss_pred CCCCcccccCHhHhccccCCcEEECCCCcCCccCHH---------HccCCcCCCEEECCCCccCccChhhhcCCccccEE
Confidence 46777887776 477888888888888888776653 2456677888888888877664 456777788888
Q ss_pred eccCCCCCCCCh-hhhCccccceEEcCCCcccC--cchhhcCcCCCcEEEccCCCCCChhHHhhcC
Q psy3049 79 DISNNKLRYLPS-EIGDLIYLRELCLNNNNLRT--LPYELGKLFQIQILGLHGNPLSKDYMKIYNE 141 (157)
Q Consensus 79 ~l~~~~~~~~~~-~~~~~~~l~~l~l~~n~l~~--l~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~ 141 (157)
++.+|.++.++. .+..+++|++|++++|.++. +|..+.++++|+++++++|.+.+..+..+..
T Consensus 106 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 171 (276)
T 2z62_A 106 VAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRV 171 (276)
T ss_dssp ECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHH
T ss_pred ECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhh
Confidence 888887776654 56777888888888888875 5667778888888888888887766655543
No 26
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.74 E-value=1.4e-17 Score=108.53 Aligned_cols=109 Identities=23% Similarity=0.251 Sum_probs=56.1
Q ss_pred cCCCEEEecCCcce--ecCccccCCCCCChhhhcCcccceEecccCCCccccccccccccccEEeccCCCCCC-CChhhh
Q psy3049 17 INLRTLDISNNKLR--YLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTRLSGDISLLINLRTLDISNNKLRY-LPSEIG 93 (157)
Q Consensus 17 ~~L~~L~l~~~~l~--~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~ 93 (157)
++++.|++++|+++ .+|.. +..+++|++|++++|.++.+ ..+..+++|++|++++|.++. +|..+.
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~----------~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 92 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGL----------TAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAE 92 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSC----------CGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHH
T ss_pred ccCCEEECCCCCCChhhHHHH----------HHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHh
Confidence 44555555555555 34332 22344555555555555544 344455555555555555554 344444
Q ss_pred CccccceEEcCCCcccCcc--hhhcCcCCCcEEEccCCCCCChhH
Q psy3049 94 DLIYLRELCLNNNNLRTLP--YELGKLFQIQILGLHGNPLSKDYM 136 (157)
Q Consensus 94 ~~~~l~~l~l~~n~l~~l~--~~~~~~~~L~~l~l~~n~~~~~~~ 136 (157)
.+++|++|++++|.++.++ ..+..+++|+++++++|.+.+..+
T Consensus 93 ~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~ 137 (168)
T 2ell_A 93 KLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLND 137 (168)
T ss_dssp HCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTT
T ss_pred hCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHH
Confidence 4555555555555555544 335555555555555555554433
No 27
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.73 E-value=1.2e-16 Score=111.80 Aligned_cols=136 Identities=31% Similarity=0.435 Sum_probs=116.5
Q ss_pred CCCCCCCccchhhhcccCCCEEEecCCcceecCccccCCCCCChhhhcCcccceEecccCCCcccccc-ccccccccEEe
Q psy3049 1 MNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTRLSGD-ISLLINLRTLD 79 (157)
Q Consensus 1 l~~n~i~~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~-~~~~~~L~~L~ 79 (157)
+++|.++.++ .+..+++|+.|++++|.++.+++.. +..+++|++|++++|.++.+++. +..+++|++|+
T Consensus 70 l~~n~l~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~---------~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 139 (272)
T 3rfs_A 70 LGGNKLHDIS-ALKELTNLTYLILTGNQLQSLPNGV---------FDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLN 139 (272)
T ss_dssp CTTSCCCCCG-GGTTCTTCCEEECTTSCCCCCCTTT---------TTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCCCCCch-hhcCCCCCCEEECCCCccCccChhH---------hcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEE
Confidence 5788998874 7899999999999999999877642 55778999999999999987654 68899999999
Q ss_pred ccCCCCCCCCh-hhhCccccceEEcCCCcccCcchh-hcCcCCCcEEEccCCCCCChhHHhhcCCCChH
Q psy3049 80 ISNNKLRYLPS-EIGDLIYLRELCLNNNNLRTLPYE-LGKLFQIQILGLHGNPLSKDYMKIYNEPNGTQ 146 (157)
Q Consensus 80 l~~~~~~~~~~-~~~~~~~l~~l~l~~n~l~~l~~~-~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~l~ 146 (157)
+++|.++.++. .+..+++|+.|++++|+++.++.. +..+++|+++++++|.+.+..+..+..++.++
T Consensus 140 L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 208 (272)
T 3rfs_A 140 LAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQ 208 (272)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCC
T ss_pred CCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCC
Confidence 99999998865 467899999999999999988765 68999999999999999998887776655443
No 28
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.73 E-value=9.2e-17 Score=105.54 Aligned_cols=125 Identities=30% Similarity=0.466 Sum_probs=106.9
Q ss_pred CCCCCCCccchhhhcccCCCEEEecCCcceecCccccCCCCCChhhhcCcccceEecccCCCcccccc-ccccccccEEe
Q psy3049 1 MNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTRLSGD-ISLLINLRTLD 79 (157)
Q Consensus 1 l~~n~i~~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~-~~~~~~L~~L~ 79 (157)
+++|.++.+|..+ .++++.|++++|.++.+++.. +..+++|++|++++|.++.+++. +..+++|+.|+
T Consensus 14 ~~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~---------~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 82 (177)
T 2o6r_A 14 CNSKGLTSVPTGI--PSSATRLELESNKLQSLPHGV---------FDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILY 82 (177)
T ss_dssp CCSSCCSSCCTTC--CTTCSEEECCSSCCCCCCTTT---------TTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred ecCCCCccCCCCC--CCCCcEEEeCCCcccEeCHHH---------hcCcccccEEECCCCcceEeChhHccCCCccCEEE
Confidence 3578888888654 368999999999999877642 55778999999999999988754 68899999999
Q ss_pred ccCCCCCCCCh-hhhCccccceEEcCCCcccCcchh-hcCcCCCcEEEccCCCCCChhH
Q psy3049 80 ISNNKLRYLPS-EIGDLIYLRELCLNNNNLRTLPYE-LGKLFQIQILGLHGNPLSKDYM 136 (157)
Q Consensus 80 l~~~~~~~~~~-~~~~~~~l~~l~l~~n~l~~l~~~-~~~~~~L~~l~l~~n~~~~~~~ 136 (157)
+++|.++.++. .+..+++|+.+++++|.++.+|.. +..+++|+++++++|++.+..+
T Consensus 83 l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 83 LHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 99999998876 467899999999999999998876 5789999999999999997754
No 29
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.73 E-value=2.4e-17 Score=129.81 Aligned_cols=74 Identities=32% Similarity=0.470 Sum_probs=45.9
Q ss_pred ccccEEeccCCCCC-CCChhhhCccccceEEcCCCccc-CcchhhcCcCCCcEEEccCCCCCChhHHhhcCCCChH
Q psy3049 73 INLRTLDISNNKLR-YLPSEIGDLIYLRELCLNNNNLR-TLPYELGKLFQIQILGLHGNPLSKDYMKIYNEPNGTQ 146 (157)
Q Consensus 73 ~~L~~L~l~~~~~~-~~~~~~~~~~~l~~l~l~~n~l~-~l~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~l~ 146 (157)
.+++.|++++|.++ .+|..+..++.|+.|++++|.++ .+|..++++++|+++|+++|.++|.+|..++.+..++
T Consensus 632 ~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~ 707 (768)
T 3rgz_A 632 GSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLT 707 (768)
T ss_dssp BCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCS
T ss_pred ccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCC
Confidence 44556666666655 45666666666666666666666 5566666666666666666666666666665555443
No 30
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.73 E-value=3e-17 Score=110.45 Aligned_cols=135 Identities=31% Similarity=0.437 Sum_probs=114.1
Q ss_pred CCCCCCccchhhhcccCCCEEEecCCcceecCccccCCCCCChhhhcCcccceEecccCCCcccccc-ccccccccEEec
Q psy3049 2 NDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTRLSGD-ISLLINLRTLDI 80 (157)
Q Consensus 2 ~~n~i~~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~-~~~~~~L~~L~l 80 (157)
+++.++.+|..+ .++++.|++++|.++.+++.. +..+++|++|++++|.++.++.. +..+++|++|++
T Consensus 15 ~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~---------~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L 83 (208)
T 2o6s_A 15 YSQGRTSVPTGI--PAQTTYLDLETNSLKSLPNGV---------FDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNL 83 (208)
T ss_dssp CSSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTT---------TTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred cCCCccCCCCCC--CCCCcEEEcCCCccCcCChhh---------hcccccCcEEECCCCccCccChhhcCCCCCcCEEEC
Confidence 467778887654 458999999999999877642 55788999999999999988654 578999999999
Q ss_pred cCCCCCCCCh-hhhCccccceEEcCCCcccCcchh-hcCcCCCcEEEccCCCCCChhHHhhcCCCChHH
Q psy3049 81 SNNKLRYLPS-EIGDLIYLRELCLNNNNLRTLPYE-LGKLFQIQILGLHGNPLSKDYMKIYNEPNGTQK 147 (157)
Q Consensus 81 ~~~~~~~~~~-~~~~~~~l~~l~l~~n~l~~l~~~-~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~l~~ 147 (157)
++|.++.++. .+..+++|++|++++|+++.++.. +..+++|+++++++|.+.+..+..+..++.++.
T Consensus 84 s~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~ 152 (208)
T 2o6s_A 84 STNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQY 152 (208)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCE
T ss_pred CCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccE
Confidence 9999998875 467899999999999999988765 789999999999999999888877877766654
No 31
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.72 E-value=7.7e-18 Score=119.42 Aligned_cols=141 Identities=23% Similarity=0.266 Sum_probs=79.1
Q ss_pred CCCCCCccchhhhcccCCCEEEecCCcceecCc--cccCCCC--------------CChhhhcCcccceEecccCCCcc-
Q psy3049 2 NDNNLTRLSGDISLLINLRTLDISNNKLRYLPS--EIGAVKN--------------LSPDLWQFTHLTALYMNDNNLTR- 64 (157)
Q Consensus 2 ~~n~i~~l~~~~~~l~~L~~L~l~~~~l~~~~~--~~~~~~~--------------~~~~~~~~~~L~~l~l~~~~~~~- 64 (157)
++|.++.+|..+..+++|+.|++++|.++.++. .+..++. .+..+..+++|++|++++|.++.
T Consensus 86 s~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 165 (306)
T 2z66_A 86 SFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQEN 165 (306)
T ss_dssp CSCSEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGG
T ss_pred CCCccccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccc
Confidence 445555555555555555556655555555442 2221111 12234455666666666666653
Q ss_pred -ccccccccccccEEeccCCCCCCC-ChhhhCccccceEEcCCCcccCcch-hhcCcCCCcEEEccCCCCCChhHHhhcC
Q psy3049 65 -LSGDISLLINLRTLDISNNKLRYL-PSEIGDLIYLRELCLNNNNLRTLPY-ELGKLFQIQILGLHGNPLSKDYMKIYNE 141 (157)
Q Consensus 65 -~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~l~~l~l~~n~l~~l~~-~~~~~~~L~~l~l~~n~~~~~~~~~~~~ 141 (157)
.+..+..+++|+.|++++|.++.+ |..+..+++|+.|++++|.++.++. .+..+++|+++++++|.+.+..+..+..
T Consensus 166 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 245 (306)
T 2z66_A 166 FLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQH 245 (306)
T ss_dssp EECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCC
T ss_pred cchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHh
Confidence 345556666666666666666654 4455566666666666666665543 3556666666666666666655554444
Q ss_pred C
Q psy3049 142 P 142 (157)
Q Consensus 142 ~ 142 (157)
+
T Consensus 246 ~ 246 (306)
T 2z66_A 246 F 246 (306)
T ss_dssp C
T ss_pred h
Confidence 3
No 32
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.72 E-value=1.6e-17 Score=111.09 Aligned_cols=130 Identities=19% Similarity=0.208 Sum_probs=97.0
Q ss_pred CCCCCCccchhhhcccCCCEEEecCCcceecCccccCCCCCChhhhcCcccceEecccCCCcc-ccccccccccccEEec
Q psy3049 2 NDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTR-LSGDISLLINLRTLDI 80 (157)
Q Consensus 2 ~~n~i~~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~-~~~~~~~~~~L~~L~l 80 (157)
++|.|+.+| .+..+++|+.|++++|.++.++ .+..+++|++|++++|.++. .+..+..+++|++|++
T Consensus 52 ~~n~i~~l~-~l~~l~~L~~L~l~~n~~~~~~-----------~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L 119 (197)
T 4ezg_A 52 ANINVTDLT-GIEYAHNIKDLTINNIHATNYN-----------PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDI 119 (197)
T ss_dssp ESSCCSCCT-TGGGCTTCSEEEEESCCCSCCG-----------GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEEC
T ss_pred cCCCccChH-HHhcCCCCCEEEccCCCCCcch-----------hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEe
Confidence 467777776 5777788888888887665443 35567788888888888875 4566778888888888
Q ss_pred cCCCCCC-CChhhhCccccceEEcCCCc-ccCcchhhcCcCCCcEEEccCCCCCChhHHhhcCCCChH
Q psy3049 81 SNNKLRY-LPSEIGDLIYLRELCLNNNN-LRTLPYELGKLFQIQILGLHGNPLSKDYMKIYNEPNGTQ 146 (157)
Q Consensus 81 ~~~~~~~-~~~~~~~~~~l~~l~l~~n~-l~~l~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~l~ 146 (157)
++|.++. .+..+..+++|++|++++|. ++.++ .+.++++|+++++++|.+.+.. .+..++.++
T Consensus 120 s~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~~~--~l~~l~~L~ 184 (197)
T 4ezg_A 120 SHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDYR--GIEDFPKLN 184 (197)
T ss_dssp CSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCCCT--TGGGCSSCC
T ss_pred cCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcChH--HhccCCCCC
Confidence 8888874 46677788888888888887 77776 5778888888888888887643 455555544
No 33
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.72 E-value=6.9e-18 Score=120.30 Aligned_cols=136 Identities=24% Similarity=0.287 Sum_probs=68.1
Q ss_pred CCCCCC-ccchhhhcccCCCEEEecCCcce-ecCccccCCC---------------CCChhhhcCcccceEecccCCCcc
Q psy3049 2 NDNNLT-RLSGDISLLINLRTLDISNNKLR-YLPSEIGAVK---------------NLSPDLWQFTHLTALYMNDNNLTR 64 (157)
Q Consensus 2 ~~n~i~-~l~~~~~~l~~L~~L~l~~~~l~-~~~~~~~~~~---------------~~~~~~~~~~~L~~l~l~~~~~~~ 64 (157)
++|.++ .+|..+..+++|+.|++++|.++ .+|..++.+. .+|..+..+. |+++++++|.++.
T Consensus 133 s~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~ 211 (313)
T 1ogq_A 133 SYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEG 211 (313)
T ss_dssp CSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEE
T ss_pred CCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccC
Confidence 344444 34444555555555555555554 3444333221 1133333333 4444555444442
Q ss_pred -ccccccccccccEEeccCCCCCCCChhhhCccccceEEcCCCccc-CcchhhcCcCCCcEEEccCCCCCChhHHh
Q psy3049 65 -LSGDISLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLR-TLPYELGKLFQIQILGLHGNPLSKDYMKI 138 (157)
Q Consensus 65 -~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~l~~n~l~-~l~~~~~~~~~L~~l~l~~n~~~~~~~~~ 138 (157)
.+..+..+++|+.|++++|.++..+..+..+++|++|++++|.++ .+|..+..+++|+++++++|.+.+.+|..
T Consensus 212 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~ 287 (313)
T 1ogq_A 212 DASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG 287 (313)
T ss_dssp CCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS
T ss_pred cCCHHHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC
Confidence 233344555555555555555543333445556666666666665 55555666666666666666666555543
No 34
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.72 E-value=9.2e-18 Score=119.65 Aligned_cols=143 Identities=24% Similarity=0.348 Sum_probs=80.2
Q ss_pred CCCCCC---ccchhhhcccCCCEEEecC-Ccce-ecCccccCCC--------------CCChhhhcCcccceEecccCCC
Q psy3049 2 NDNNLT---RLSGDISLLINLRTLDISN-NKLR-YLPSEIGAVK--------------NLSPDLWQFTHLTALYMNDNNL 62 (157)
Q Consensus 2 ~~n~i~---~l~~~~~~l~~L~~L~l~~-~~l~-~~~~~~~~~~--------------~~~~~~~~~~~L~~l~l~~~~~ 62 (157)
++|.++ .+|+.+..+++|+.|++++ |.+. .+|+.++.++ .+|..+..+++|++|++++|.+
T Consensus 58 ~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l 137 (313)
T 1ogq_A 58 SGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNAL 137 (313)
T ss_dssp ECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEE
T ss_pred CCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCcc
Confidence 455665 4666677777777777773 6665 4554443222 1244455566666666666666
Q ss_pred c-cccccccccccccEEeccCCCCC-CCChhhhCcc-ccceEEcCCCccc-CcchhhcCcCCCcEEEccCCCCCChhHHh
Q psy3049 63 T-RLSGDISLLINLRTLDISNNKLR-YLPSEIGDLI-YLRELCLNNNNLR-TLPYELGKLFQIQILGLHGNPLSKDYMKI 138 (157)
Q Consensus 63 ~-~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~-~l~~l~l~~n~l~-~l~~~~~~~~~L~~l~l~~n~~~~~~~~~ 138 (157)
+ .+|..+..+++|++|++++|.++ .+|..+..++ .|+.+++++|.++ .+|..+..+. |+++++++|.+.+..+..
T Consensus 138 ~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~ 216 (313)
T 1ogq_A 138 SGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVL 216 (313)
T ss_dssp ESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGG
T ss_pred CCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHH
Confidence 5 34555556666666666666665 4555555555 5666666666555 4444444443 555555555555444544
Q ss_pred hcCCCCh
Q psy3049 139 YNEPNGT 145 (157)
Q Consensus 139 ~~~~~~l 145 (157)
+..++.+
T Consensus 217 ~~~l~~L 223 (313)
T 1ogq_A 217 FGSDKNT 223 (313)
T ss_dssp CCTTSCC
T ss_pred HhcCCCC
Confidence 4444333
No 35
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.71 E-value=7.6e-17 Score=114.69 Aligned_cols=86 Identities=26% Similarity=0.359 Sum_probs=43.4
Q ss_pred hcCcccceEecccCCCccccccccccccccEEeccCCCCCCCChhhhCccccceEEcCCCcccCcchhhcCcCCCcEEEc
Q psy3049 47 WQFTHLTALYMNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLRTLPYELGKLFQIQILGL 126 (157)
Q Consensus 47 ~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~l~~n~l~~l~~~~~~~~~L~~l~l 126 (157)
..+++|++|++++|.++.+++ +..+++|+.|++++|.++.++. +..+++|+.|++++|.++.++. +..+++|+++++
T Consensus 126 ~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L 202 (308)
T 1h6u_A 126 AGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQVSDLTP-LANLSKLTTLKADDNKISDISP-LASLPNLIEVHL 202 (308)
T ss_dssp TTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEEC
T ss_pred cCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccCCcCCCChh-hcCCCCCCEEECCCCccCcChh-hcCCCCCCEEEc
Confidence 334444444444444444332 3444555555555555544433 4455555555555555555443 455555555555
Q ss_pred cCCCCCChh
Q psy3049 127 HGNPLSKDY 135 (157)
Q Consensus 127 ~~n~~~~~~ 135 (157)
++|.+.+..
T Consensus 203 ~~N~l~~~~ 211 (308)
T 1h6u_A 203 KNNQISDVS 211 (308)
T ss_dssp TTSCCCBCG
T ss_pred cCCccCccc
Confidence 555555444
No 36
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.71 E-value=8.3e-17 Score=121.05 Aligned_cols=140 Identities=21% Similarity=0.291 Sum_probs=110.5
Q ss_pred CCCCCCCccch-hhhcccCCCEEEecCCcceecCccccCCCCCChhhh-cCcccceEecccCCCccccccccccccccEE
Q psy3049 1 MNDNNLTRLSG-DISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLW-QFTHLTALYMNDNNLTRLSGDISLLINLRTL 78 (157)
Q Consensus 1 l~~n~i~~l~~-~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~-~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L 78 (157)
+++|.|+.+++ .+..+++|+.|++++|.++.+++ ..+. .+++|++|++++|.++.++. ...+++|+.|
T Consensus 127 L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~---------~~l~~~l~~L~~L~Ls~N~l~~~~~-~~~l~~L~~L 196 (487)
T 3oja_A 127 LANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNF---------AELAASSDTLEHLNLQYNFIYDVKG-QVVFAKLKTL 196 (487)
T ss_dssp CCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEG---------GGGGGGTTTCCEEECTTSCCCEEEC-CCCCTTCCEE
T ss_pred CCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcCh---------HHHhhhCCcccEEecCCCccccccc-cccCCCCCEE
Confidence 34566665543 36666666666666666665322 2333 57889999999999987754 3458899999
Q ss_pred eccCCCCCCCChhhhCccccceEEcCCCcccCcchhhcCcCCCcEEEccCCCCC-ChhHHhhcCCCChHHHHH
Q psy3049 79 DISNNKLRYLPSEIGDLIYLRELCLNNNNLRTLPYELGKLFQIQILGLHGNPLS-KDYMKIYNEPNGTQKLLS 150 (157)
Q Consensus 79 ~l~~~~~~~~~~~~~~~~~l~~l~l~~n~l~~l~~~~~~~~~L~~l~l~~n~~~-~~~~~~~~~~~~l~~l~~ 150 (157)
++++|.++.+|..+..+++|+.+++++|.++.+|..+..+++|+.+++++|++. +.++..+..++.++.+..
T Consensus 197 ~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~ 269 (487)
T 3oja_A 197 DLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAK 269 (487)
T ss_dssp ECCSSCCCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHH
T ss_pred ECCCCCCCCCCHhHcCCCCccEEEecCCcCcccchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEec
Confidence 999999999988898999999999999999999999999999999999999998 677788877777776644
No 37
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.71 E-value=6.6e-17 Score=112.68 Aligned_cols=126 Identities=30% Similarity=0.443 Sum_probs=72.7
Q ss_pred CCCCCCccchhhhcccCCCEEEecCCcceecCccccCCCCCChhhhcCcccceEecccCCCccccccccccccccEEecc
Q psy3049 2 NDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTRLSGDISLLINLRTLDIS 81 (157)
Q Consensus 2 ~~n~i~~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~ 81 (157)
++|.|+.++ .+..+++|+.|++++|+++++++ +..+++|++|++++|.++.++.... .+|+.|+++
T Consensus 49 ~~n~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~-----------l~~l~~L~~L~L~~N~l~~l~~~~~--~~L~~L~L~ 114 (263)
T 1xeu_A 49 DNSNIQSLA-GMQFFTNLKELHLSHNQISDLSP-----------LKDLTKLEELSVNRNRLKNLNGIPS--ACLSRLFLD 114 (263)
T ss_dssp TTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-----------GTTCSSCCEEECCSSCCSCCTTCCC--SSCCEEECC
T ss_pred cCCCcccch-HHhhCCCCCEEECCCCccCCChh-----------hccCCCCCEEECCCCccCCcCcccc--CcccEEEcc
Confidence 344444443 34444455555555554444332 3455666666666666665543222 566666666
Q ss_pred CCCCCCCChhhhCccccceEEcCCCcccCcchhhcCcCCCcEEEccCCCCCChhHHhhcCCCCh
Q psy3049 82 NNKLRYLPSEIGDLIYLRELCLNNNNLRTLPYELGKLFQIQILGLHGNPLSKDYMKIYNEPNGT 145 (157)
Q Consensus 82 ~~~~~~~~~~~~~~~~l~~l~l~~n~l~~l~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~l 145 (157)
+|.++.++ .+..+++|+.|++++|+++.++ .+..+++|+++++++|.+.+. ..+..++.+
T Consensus 115 ~N~l~~~~-~l~~l~~L~~L~Ls~N~i~~~~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L 174 (263)
T 1xeu_A 115 NNELRDTD-SLIHLKNLEILSIRNNKLKSIV-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKV 174 (263)
T ss_dssp SSCCSBSG-GGTTCTTCCEEECTTSCCCBCG-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCC
T ss_pred CCccCCCh-hhcCcccccEEECCCCcCCCCh-HHccCCCCCEEECCCCcCcch--HHhccCCCC
Confidence 66666553 3566677777777777777664 466667777777777777665 344444443
No 38
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.71 E-value=8.1e-18 Score=121.57 Aligned_cols=133 Identities=20% Similarity=0.270 Sum_probs=65.4
Q ss_pred CCCCCCccch-hhhcccCCCEEEecCCcceecCccccCCCCCChhhhcCcccceEecccCCCcccccc-ccccccccEEe
Q psy3049 2 NDNNLTRLSG-DISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTRLSGD-ISLLINLRTLD 79 (157)
Q Consensus 2 ~~n~i~~l~~-~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~-~~~~~~L~~L~ 79 (157)
++|.|+.++. .+..+++|+.|++++|.++++++. .+..+++|++|++++|.++.++.. +..+++|++|+
T Consensus 60 ~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~---------~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 130 (353)
T 2z80_A 60 SNNRITYISNSDLQRCVNLQALVLTSNGINTIEED---------SFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLN 130 (353)
T ss_dssp TTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTT---------TTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEE
T ss_pred CCCcCcccCHHHhccCCCCCEEECCCCccCccCHh---------hcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEE
Confidence 4455555554 355555555555555555544321 233444555555555555544433 44455555555
Q ss_pred ccCCCCCCCCh--hhhCccccceEEcCCC-cccCcc-hhhcCcCCCcEEEccCCCCCChhHHhhcCCC
Q psy3049 80 ISNNKLRYLPS--EIGDLIYLRELCLNNN-NLRTLP-YELGKLFQIQILGLHGNPLSKDYMKIYNEPN 143 (157)
Q Consensus 80 l~~~~~~~~~~--~~~~~~~l~~l~l~~n-~l~~l~-~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~ 143 (157)
+++|.++.+|. .+..+++|+++++++| .++.++ ..+..+++|+++++++|.+.+..+..++.++
T Consensus 131 L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~ 198 (353)
T 2z80_A 131 LLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQ 198 (353)
T ss_dssp CTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCS
T ss_pred CCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccc
Confidence 55555554443 3444555555555554 244332 2344555555555555555544444444433
No 39
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.71 E-value=3.4e-17 Score=125.65 Aligned_cols=134 Identities=21% Similarity=0.315 Sum_probs=112.3
Q ss_pred CCCCCccchhhhcccCCCEEEecCCcceecCccccCCCCCChhhhcCcccceEecccCCCccccc-cccccccccEEecc
Q psy3049 3 DNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTRLSG-DISLLINLRTLDIS 81 (157)
Q Consensus 3 ~n~i~~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~-~~~~~~~L~~L~l~ 81 (157)
+..++.||..+. ..++.|++++|.|+++++. .|.++++|++|++++|.++.+++ .+..+++|++|+++
T Consensus 40 ~~~l~~vP~~lp--~~~~~LdLs~N~i~~l~~~---------~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls 108 (635)
T 4g8a_A 40 ELNFYKIPDNLP--FSTKNLDLSFNPLRHLGSY---------SFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILT 108 (635)
T ss_dssp TSCCSSCCSSSC--TTCCEEECTTSCCCEECTT---------TTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred CCCcCccCCCCC--cCCCEEEeeCCCCCCCCHH---------HHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEcc
Confidence 345777876543 3789999999999998864 36788899999999999998865 57899999999999
Q ss_pred CCCCCCCCh-hhhCccccceEEcCCCcccCcchh-hcCcCCCcEEEccCCCCCCh-hHHhhcCCCChHH
Q psy3049 82 NNKLRYLPS-EIGDLIYLRELCLNNNNLRTLPYE-LGKLFQIQILGLHGNPLSKD-YMKIYNEPNGTQK 147 (157)
Q Consensus 82 ~~~~~~~~~-~~~~~~~l~~l~l~~n~l~~l~~~-~~~~~~L~~l~l~~n~~~~~-~~~~~~~~~~l~~ 147 (157)
+|+++.+|. .+..+++|++|++++|+++.++.. ++++++|+++++++|.+.+. .+..++.+..++.
T Consensus 109 ~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~ 177 (635)
T 4g8a_A 109 GNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEH 177 (635)
T ss_dssp TCCCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCE
T ss_pred CCcCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhh
Confidence 999998875 578999999999999999998864 89999999999999998764 5666666665543
No 40
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.71 E-value=5.6e-17 Score=120.40 Aligned_cols=144 Identities=22% Similarity=0.344 Sum_probs=87.3
Q ss_pred CCCCCCCccchh-hhcccCCCEEEecCCcceecCcc-ccCCC--------------CCCh-hhhcCcccceEecccCCCc
Q psy3049 1 MNDNNLTRLSGD-ISLLINLRTLDISNNKLRYLPSE-IGAVK--------------NLSP-DLWQFTHLTALYMNDNNLT 63 (157)
Q Consensus 1 l~~n~i~~l~~~-~~~l~~L~~L~l~~~~l~~~~~~-~~~~~--------------~~~~-~~~~~~~L~~l~l~~~~~~ 63 (157)
+++|.|+.+++. +..+++|+.|++++|.++.+++. +..++ .++. .+..+++|++|++++|.++
T Consensus 119 L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~ 198 (440)
T 3zyj_A 119 LFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR 198 (440)
T ss_dssp CCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS
T ss_pred CCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc
Confidence 345566655543 55666666666666666655541 11111 1122 3555667777777777776
Q ss_pred cccccccccccccEEeccCCCCCCC-ChhhhCccccceEEcCCCcccCcc-hhhcCcCCCcEEEccCCCCCChhHHhhcC
Q psy3049 64 RLSGDISLLINLRTLDISNNKLRYL-PSEIGDLIYLRELCLNNNNLRTLP-YELGKLFQIQILGLHGNPLSKDYMKIYNE 141 (157)
Q Consensus 64 ~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~l~~l~l~~n~l~~l~-~~~~~~~~L~~l~l~~n~~~~~~~~~~~~ 141 (157)
.+| .+..+.+|+.|++++|.++.+ |..+..+++|+.|++++|+++.++ ..+.++++|+++++++|.+++..++.+..
T Consensus 199 ~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 277 (440)
T 3zyj_A 199 EIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTP 277 (440)
T ss_dssp SCC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSS
T ss_pred ccc-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhcc
Confidence 665 355666777777777777655 446666777777777777777554 33666777777777777777666666554
Q ss_pred CCCh
Q psy3049 142 PNGT 145 (157)
Q Consensus 142 ~~~l 145 (157)
+..+
T Consensus 278 l~~L 281 (440)
T 3zyj_A 278 LHHL 281 (440)
T ss_dssp CTTC
T ss_pred ccCC
Confidence 4433
No 41
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.71 E-value=3.1e-17 Score=125.84 Aligned_cols=131 Identities=24% Similarity=0.310 Sum_probs=97.3
Q ss_pred CCCCCCCccch-hhhcccCCCEEEecCCcceecCccccCCCCCChhhhcCcccceEecccCCCccc-cccccccccccEE
Q psy3049 1 MNDNNLTRLSG-DISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTRL-SGDISLLINLRTL 78 (157)
Q Consensus 1 l~~n~i~~l~~-~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~-~~~~~~~~~L~~L 78 (157)
+++|.++.+++ .+.++++|+.|++++|.++.+++. .+..+++|++|++++|.++.+ |..++.+++|++|
T Consensus 39 Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~---------~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L 109 (606)
T 3vq2_A 39 LSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDK---------AWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENL 109 (606)
T ss_dssp CTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTT---------TTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEE
T ss_pred CCCCCcCEeChhhccCCccCcEEeCCCCcccccCHH---------HhhchhhcCEeECCCCcccccChhhcCCcccCCEE
Confidence 45666666665 466777777777777777665442 355677888888888888876 5667788888888
Q ss_pred eccCCCCCCCC-hhhhCccccceEEcCCCccc--CcchhhcCcCCCcEEEccCCCCCChhHHhhc
Q psy3049 79 DISNNKLRYLP-SEIGDLIYLRELCLNNNNLR--TLPYELGKLFQIQILGLHGNPLSKDYMKIYN 140 (157)
Q Consensus 79 ~l~~~~~~~~~-~~~~~~~~l~~l~l~~n~l~--~l~~~~~~~~~L~~l~l~~n~~~~~~~~~~~ 140 (157)
++++|.++.++ ..+..+++|++|++++|.++ .+|..++++++|+++++++|.+.+..+..++
T Consensus 110 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 174 (606)
T 3vq2_A 110 VAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQ 174 (606)
T ss_dssp ECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTH
T ss_pred EccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhh
Confidence 88888887665 56778888888888888887 4677788888888888888888877666554
No 42
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.70 E-value=5.4e-17 Score=120.85 Aligned_cols=144 Identities=19% Similarity=0.349 Sum_probs=79.0
Q ss_pred CCCCCCCccch-hhhcccCCCEEEecCCcceecCc-cccCC-------------CCCChh-hhcCcccceEecccCCCcc
Q psy3049 1 MNDNNLTRLSG-DISLLINLRTLDISNNKLRYLPS-EIGAV-------------KNLSPD-LWQFTHLTALYMNDNNLTR 64 (157)
Q Consensus 1 l~~n~i~~l~~-~~~~l~~L~~L~l~~~~l~~~~~-~~~~~-------------~~~~~~-~~~~~~L~~l~l~~~~~~~ 64 (157)
+++|.|+.+++ .+..+++|+.|++++|.++.+++ .+..+ ..++.. +..+++|++|++++|.++.
T Consensus 82 L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 161 (452)
T 3zyi_A 82 LMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIES 161 (452)
T ss_dssp CCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCE
T ss_pred CcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcce
Confidence 46778887754 47888888888888888887653 22221 122322 4556777777777777765
Q ss_pred ccc-cccccccccEEeccCC-CCCCCCh-hhhCccccceEEcCCCcccCcchhhcCcCCCcEEEccCCCCCChhHHhhcC
Q psy3049 65 LSG-DISLLINLRTLDISNN-KLRYLPS-EIGDLIYLRELCLNNNNLRTLPYELGKLFQIQILGLHGNPLSKDYMKIYNE 141 (157)
Q Consensus 65 ~~~-~~~~~~~L~~L~l~~~-~~~~~~~-~~~~~~~l~~l~l~~n~l~~l~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~ 141 (157)
++. .+..+++|+.|+++++ .++.++. .+..+++|++|++++|+++.+|. +..+++|++|++++|.+.+..+..|..
T Consensus 162 ~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 240 (452)
T 3zyi_A 162 IPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPN-LTPLVGLEELEMSGNHFPEIRPGSFHG 240 (452)
T ss_dssp ECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCCC-CTTCTTCCEEECTTSCCSEECGGGGTT
T ss_pred eCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccccc-ccccccccEEECcCCcCcccCcccccC
Confidence 543 3444444555555442 3333332 34445555555555555554432 344455555555555555544444444
Q ss_pred CCCh
Q psy3049 142 PNGT 145 (157)
Q Consensus 142 ~~~l 145 (157)
+..+
T Consensus 241 l~~L 244 (452)
T 3zyi_A 241 LSSL 244 (452)
T ss_dssp CTTC
T ss_pred ccCC
Confidence 4333
No 43
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.70 E-value=1.8e-16 Score=111.94 Aligned_cols=139 Identities=24% Similarity=0.338 Sum_probs=92.5
Q ss_pred CCCCCCCccchhhhcccCCCEEEecCCcceecCccccCCCCC------------ChhhhcCcccceEecccCCCcccccc
Q psy3049 1 MNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNL------------SPDLWQFTHLTALYMNDNNLTRLSGD 68 (157)
Q Consensus 1 l~~n~i~~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~------------~~~~~~~~~L~~l~l~~~~~~~~~~~ 68 (157)
+++|.++.++ .+..+++|+.|++++|+++.+++ +..++.+ .+.+..+++|++|++++|.++.+ +.
T Consensus 53 l~~~~i~~~~-~~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~i~~~-~~ 129 (291)
T 1h6t_A 53 ANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDI-NG 129 (291)
T ss_dssp CTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCGGGGTTCTTCCEEECTTSCCCCC-GG
T ss_pred ccCCCcccCh-hHhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcCCCChhhccCCCCCEEECCCCcCCCC-hh
Confidence 3566666664 36667777777777777776554 3322211 12355667777888888877765 34
Q ss_pred ccccccccEEeccCCCCCCCChhhhCccccceEEcCCCcccCcchhhcCcCCCcEEEccCCCCCChhHHhhcCCCChH
Q psy3049 69 ISLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLRTLPYELGKLFQIQILGLHGNPLSKDYMKIYNEPNGTQ 146 (157)
Q Consensus 69 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~l~~n~l~~l~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~l~ 146 (157)
+..+++|+.|++++|.++.+ ..+..+++|++|++++|.++.++. +..+++|+++++++|.+.+.. .+..++.++
T Consensus 130 l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~L~~N~i~~l~--~l~~l~~L~ 203 (291)
T 1h6t_A 130 LVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISDLR--ALAGLKNLD 203 (291)
T ss_dssp GGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCBCG--GGTTCTTCS
T ss_pred hcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEccCCccccchh-hcCCCccCEEECCCCcCCCCh--hhccCCCCC
Confidence 66677788888888877766 456677788888888888877665 777788888888888777642 254444443
No 44
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.70 E-value=1.2e-17 Score=132.75 Aligned_cols=140 Identities=21% Similarity=0.323 Sum_probs=93.8
Q ss_pred CCCCCccchhhhcccCCCEEEecCCccee------------------cCcccc--CCC--------------CCChhhhc
Q psy3049 3 DNNLTRLSGDISLLINLRTLDISNNKLRY------------------LPSEIG--AVK--------------NLSPDLWQ 48 (157)
Q Consensus 3 ~n~i~~l~~~~~~l~~L~~L~l~~~~l~~------------------~~~~~~--~~~--------------~~~~~~~~ 48 (157)
.|.++.+|+.++++++|+.|++++|.++. +|+.++ .+. .+|..+..
T Consensus 434 ~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~ 513 (876)
T 4ecn_A 434 TNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYD 513 (876)
T ss_dssp SCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGG
T ss_pred cCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhC
Confidence 46677788889999999999999999987 777654 332 23566666
Q ss_pred CcccceEecccCC-Ccc--ccccccccc-------cccEEeccCCCCCCCCh--hhhCccccceEEcCCCcccCcchhhc
Q psy3049 49 FTHLTALYMNDNN-LTR--LSGDISLLI-------NLRTLDISNNKLRYLPS--EIGDLIYLRELCLNNNNLRTLPYELG 116 (157)
Q Consensus 49 ~~~L~~l~l~~~~-~~~--~~~~~~~~~-------~L~~L~l~~~~~~~~~~--~~~~~~~l~~l~l~~n~l~~l~~~~~ 116 (157)
+++|+.|++++|. ++. +|..++.+. +|+.|++++|.++.+|. .+..+++|+.|++++|.++.+| .++
T Consensus 514 L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp-~~~ 592 (876)
T 4ecn_A 514 LPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLE-AFG 592 (876)
T ss_dssp CSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCCBCC-CCC
T ss_pred CCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcccch-hhc
Confidence 7777777777776 653 555444444 67777777776666666 6666677777777777666666 566
Q ss_pred CcCCCcEEEccCCCCCChhHHhhcCCCC
Q psy3049 117 KLFQIQILGLHGNPLSKDYMKIYNEPNG 144 (157)
Q Consensus 117 ~~~~L~~l~l~~n~~~~~~~~~~~~~~~ 144 (157)
.+++|+.|++++|.+. .+|..+..+..
T Consensus 593 ~L~~L~~L~Ls~N~l~-~lp~~l~~l~~ 619 (876)
T 4ecn_A 593 TNVKLTDLKLDYNQIE-EIPEDFCAFTD 619 (876)
T ss_dssp TTSEESEEECCSSCCS-CCCTTSCEECT
T ss_pred CCCcceEEECcCCccc-cchHHHhhccc
Confidence 6666666666666666 44444444433
No 45
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.70 E-value=1.7e-16 Score=112.83 Aligned_cols=121 Identities=21% Similarity=0.349 Sum_probs=86.0
Q ss_pred CCCCCCCccchhhhcccCCCEEEecCCcceecCccccCCCCCChhhhcCcccceEecccCCCccccccccccccccEEec
Q psy3049 1 MNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTRLSGDISLLINLRTLDI 80 (157)
Q Consensus 1 l~~n~i~~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l 80 (157)
+++|.++.+++ +..+++|+.|++++|.++.++. +..+++|++|++++|.++.++. +..+++|+.|++
T Consensus 70 L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~~~~-----------~~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l 136 (308)
T 1h6u_A 70 LKDNQITDLAP-LKNLTKITELELSGNPLKNVSA-----------IAGLQSIKTLDLTSTQITDVTP-LAGLSNLQVLYL 136 (308)
T ss_dssp CCSSCCCCCGG-GTTCCSCCEEECCSCCCSCCGG-----------GTTCTTCCEEECTTSCCCCCGG-GTTCTTCCEEEC
T ss_pred ccCCcCCCChh-HccCCCCCEEEccCCcCCCchh-----------hcCCCCCCEEECCCCCCCCchh-hcCCCCCCEEEC
Confidence 46777777776 7778888888888887776532 4456677777777777776653 666777777777
Q ss_pred cCCCCCCCChhhhCccccceEEcCCCcccCcchhhcCcCCCcEEEccCCCCCChhH
Q psy3049 81 SNNKLRYLPSEIGDLIYLRELCLNNNNLRTLPYELGKLFQIQILGLHGNPLSKDYM 136 (157)
Q Consensus 81 ~~~~~~~~~~~~~~~~~l~~l~l~~n~l~~l~~~~~~~~~L~~l~l~~n~~~~~~~ 136 (157)
++|.++.++. +..+++|+.|++++|.++.++. +..+++|+++++++|.+.+..+
T Consensus 137 ~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~ 190 (308)
T 1h6u_A 137 DLNQITNISP-LAGLTNLQYLSIGNAQVSDLTP-LANLSKLTTLKADDNKISDISP 190 (308)
T ss_dssp CSSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG
T ss_pred CCCccCcCcc-ccCCCCccEEEccCCcCCCChh-hcCCCCCCEEECCCCccCcChh
Confidence 7777776654 6667777777777777776655 6677777777777777776543
No 46
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.70 E-value=9.3e-17 Score=105.48 Aligned_cols=119 Identities=22% Similarity=0.349 Sum_probs=67.8
Q ss_pred CCCCCCccchhhhccc-CCCEEEecCCcceecCccccCCCCCChhhhcCcccceEecccCCCccccccc-cccccccEEe
Q psy3049 2 NDNNLTRLSGDISLLI-NLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTRLSGDI-SLLINLRTLD 79 (157)
Q Consensus 2 ~~n~i~~l~~~~~~l~-~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~-~~~~~L~~L~ 79 (157)
++|.|+.++. +..+. +|+.|++++|.++.+ +. +..+++|++|++++|.++.+++.+ ..+++|++|+
T Consensus 27 ~~n~l~~i~~-~~~~~~~L~~L~Ls~N~l~~~-~~----------l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 94 (176)
T 1a9n_A 27 RGYKIPVIEN-LGATLDQFDAIDFSDNEIRKL-DG----------FPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELI 94 (176)
T ss_dssp TTSCCCSCCC-GGGGTTCCSEEECCSSCCCEE-CC----------CCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEE
T ss_pred eCCCCchhHH-hhhcCCCCCEEECCCCCCCcc-cc----------cccCCCCCEEECCCCcccccCcchhhcCCCCCEEE
Confidence 4555555533 33333 666666666666554 11 334555666666666666555433 5566666666
Q ss_pred ccCCCCCCCCh--hhhCccccceEEcCCCcccCcchh----hcCcCCCcEEEccCCCCC
Q psy3049 80 ISNNKLRYLPS--EIGDLIYLRELCLNNNNLRTLPYE----LGKLFQIQILGLHGNPLS 132 (157)
Q Consensus 80 l~~~~~~~~~~--~~~~~~~l~~l~l~~n~l~~l~~~----~~~~~~L~~l~l~~n~~~ 132 (157)
+++|.++.+|. .+..+++|+.+++++|.++.+|.. +..+++|++++++.|...
T Consensus 95 L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 95 LTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp CCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred CCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 66666665554 455566666666666666655543 556666666666665543
No 47
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.70 E-value=6.6e-17 Score=120.01 Aligned_cols=144 Identities=23% Similarity=0.368 Sum_probs=81.1
Q ss_pred CCCCCCCccch-hhhcccCCCEEEecCCcceecCcc-ccCC-------------CCCCh-hhhcCcccceEecccCCCcc
Q psy3049 1 MNDNNLTRLSG-DISLLINLRTLDISNNKLRYLPSE-IGAV-------------KNLSP-DLWQFTHLTALYMNDNNLTR 64 (157)
Q Consensus 1 l~~n~i~~l~~-~~~~l~~L~~L~l~~~~l~~~~~~-~~~~-------------~~~~~-~~~~~~~L~~l~l~~~~~~~ 64 (157)
+++|.|+.++. .+..+++|+.|++++|.++.+++. +..+ ..++. .+..+++|++|++++|.++.
T Consensus 71 L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~ 150 (440)
T 3zyj_A 71 LHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIES 150 (440)
T ss_dssp CCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCE
T ss_pred ccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccc
Confidence 46777777664 477788888888888888766532 2211 12232 35566777777777777765
Q ss_pred ccc-cccccccccEEeccCC-CCCCCCh-hhhCccccceEEcCCCcccCcchhhcCcCCCcEEEccCCCCCChhHHhhcC
Q psy3049 65 LSG-DISLLINLRTLDISNN-KLRYLPS-EIGDLIYLRELCLNNNNLRTLPYELGKLFQIQILGLHGNPLSKDYMKIYNE 141 (157)
Q Consensus 65 ~~~-~~~~~~~L~~L~l~~~-~~~~~~~-~~~~~~~l~~l~l~~n~l~~l~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~ 141 (157)
++. .+..+++|+.|++.+| .++.++. .+..+++|++|++++|.++.+|. +..+++|++|++++|.+.+..+..|..
T Consensus 151 ~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 229 (440)
T 3zyj_A 151 IPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPN-LTPLIKLDELDLSGNHLSAIRPGSFQG 229 (440)
T ss_dssp ECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCCC-CTTCSSCCEEECTTSCCCEECTTTTTT
T ss_pred cCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccccc-cCCCcccCEEECCCCccCccChhhhcc
Confidence 543 3444555555555542 3333332 34455555555555555555543 445555555555555555555555544
Q ss_pred CCCh
Q psy3049 142 PNGT 145 (157)
Q Consensus 142 ~~~l 145 (157)
+..+
T Consensus 230 l~~L 233 (440)
T 3zyj_A 230 LMHL 233 (440)
T ss_dssp CTTC
T ss_pred CccC
Confidence 4433
No 48
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.70 E-value=5.3e-17 Score=103.81 Aligned_cols=121 Identities=20% Similarity=0.227 Sum_probs=100.4
Q ss_pred cccCCCEEEecCCcce--ecCccccCCCCCChhhhcCcccceEecccCCCccccccccccccccEEeccCCCCCC-CChh
Q psy3049 15 LLINLRTLDISNNKLR--YLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTRLSGDISLLINLRTLDISNNKLRY-LPSE 91 (157)
Q Consensus 15 ~l~~L~~L~l~~~~l~--~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~ 91 (157)
..++++.|++++|.++ .+|.. +..+++|++|++++|.++.+ ..++.+++|++|++++|.++. +|..
T Consensus 15 ~~~~l~~L~l~~n~l~~~~~~~~----------~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~ 83 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNEGKLEGL----------TDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVL 83 (149)
T ss_dssp CGGGCSEEECTTCBCBTTBCCSC----------CTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHH
T ss_pred CCccCeEEEccCCcCChhHHHHH----------HhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHH
Confidence 4578999999999998 66654 34677899999999999877 677889999999999999987 6777
Q ss_pred hhCccccceEEcCCCcccCcc--hhhcCcCCCcEEEccCCCCCChhH---HhhcCCCChH
Q psy3049 92 IGDLIYLRELCLNNNNLRTLP--YELGKLFQIQILGLHGNPLSKDYM---KIYNEPNGTQ 146 (157)
Q Consensus 92 ~~~~~~l~~l~l~~n~l~~l~--~~~~~~~~L~~l~l~~n~~~~~~~---~~~~~~~~l~ 146 (157)
+..+++|+++++++|.++.++ ..+..+++|+++++++|.+.+..+ ..++.++.++
T Consensus 84 ~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~ 143 (149)
T 2je0_A 84 AEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLT 143 (149)
T ss_dssp HHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCC
T ss_pred hhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcc
Confidence 777899999999999999875 668999999999999999887765 5666666554
No 49
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.69 E-value=3.1e-17 Score=104.88 Aligned_cols=117 Identities=24% Similarity=0.249 Sum_probs=101.8
Q ss_pred CCCCCCC--ccchhhhcccCCCEEEecCCcceecCccccCCCCCChhhhcCcccceEecccCCCcc-ccccccccccccE
Q psy3049 1 MNDNNLT--RLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTR-LSGDISLLINLRT 77 (157)
Q Consensus 1 l~~n~i~--~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~-~~~~~~~~~~L~~ 77 (157)
+++|.++ .+|+.+..+++|+.|++++|.++.+ +. +..+++|+++++++|.++. +|..+..+++|++
T Consensus 24 l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~----------~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~ 92 (149)
T 2je0_A 24 LDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-AN----------LPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTH 92 (149)
T ss_dssp CTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TT----------CCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCE
T ss_pred ccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hh----------hhcCCCCCEEECCCCcccchHHHHhhhCCCCCE
Confidence 5788898 8888889999999999999999876 22 4567899999999999997 6666777999999
Q ss_pred EeccCCCCCCCC--hhhhCccccceEEcCCCcccCcch----hhcCcCCCcEEEccC
Q psy3049 78 LDISNNKLRYLP--SEIGDLIYLRELCLNNNNLRTLPY----ELGKLFQIQILGLHG 128 (157)
Q Consensus 78 L~l~~~~~~~~~--~~~~~~~~l~~l~l~~n~l~~l~~----~~~~~~~L~~l~l~~ 128 (157)
|++++|.++.++ ..+..+++|+++++++|.++.++. .+..+++|+++++++
T Consensus 93 L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 93 LNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp EECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred EECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 999999999865 678899999999999999998875 588999999998863
No 50
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.69 E-value=4.2e-16 Score=115.77 Aligned_cols=127 Identities=28% Similarity=0.426 Sum_probs=105.0
Q ss_pred CCCCCCCccc-hhhhcccCCCEEEecCCcceecCccccCCCCCChhhhcCcccceEecccCCCccc-cccccccccccEE
Q psy3049 1 MNDNNLTRLS-GDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTRL-SGDISLLINLRTL 78 (157)
Q Consensus 1 l~~n~i~~l~-~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~-~~~~~~~~~L~~L 78 (157)
+++|.++.++ ..+..+++|+.|++++|.++.+++. .+..+++|++|++++|.++.+ +..+..+++|+.|
T Consensus 282 l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~---------~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 352 (455)
T 3v47_A 282 LSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDN---------AFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVL 352 (455)
T ss_dssp CCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTT---------TTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEE
T ss_pred ecCccccccchhhcccCCCCCEEECCCCcccccChh---------HhcCcccCCEEECCCCccCCcChhHhcCcccCCEE
Confidence 3566777554 4478888888888888888876542 356778999999999999876 4567889999999
Q ss_pred eccCCCCCCC-ChhhhCccccceEEcCCCcccCcchh-hcCcCCCcEEEccCCCCCChhH
Q psy3049 79 DISNNKLRYL-PSEIGDLIYLRELCLNNNNLRTLPYE-LGKLFQIQILGLHGNPLSKDYM 136 (157)
Q Consensus 79 ~l~~~~~~~~-~~~~~~~~~l~~l~l~~n~l~~l~~~-~~~~~~L~~l~l~~n~~~~~~~ 136 (157)
++++|.++.+ |..+..+++|++|++++|+++.+|.. +..+++|+++++++|++.+..+
T Consensus 353 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 353 DLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp ECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred ECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence 9999999876 66888999999999999999988865 6899999999999999997643
No 51
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.69 E-value=1.3e-17 Score=114.51 Aligned_cols=140 Identities=17% Similarity=0.175 Sum_probs=65.5
Q ss_pred CCCCCCccch-hhhcccCCCEEEecCCc-ceecCcc-ccCC--------------CCCC-hhhhcCcccceEecccCCCc
Q psy3049 2 NDNNLTRLSG-DISLLINLRTLDISNNK-LRYLPSE-IGAV--------------KNLS-PDLWQFTHLTALYMNDNNLT 63 (157)
Q Consensus 2 ~~n~i~~l~~-~~~~l~~L~~L~l~~~~-l~~~~~~-~~~~--------------~~~~-~~~~~~~~L~~l~l~~~~~~ 63 (157)
++|.|+.+++ .+..+++|+.|++++|+ ++.+++. +..+ ..++ ..+..+++|+++++++|.++
T Consensus 39 ~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~ 118 (239)
T 2xwt_C 39 IETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLK 118 (239)
T ss_dssp ESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCC
T ss_pred eCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCc
Confidence 4566666655 36666666666666665 6555542 2111 1111 12334455555555555554
Q ss_pred ccccccccccccc---EEeccCC-CCCCCCh-hhhCccccc-eEEcCCCcccCcchhhcCcCCCcEEEccCCC-CCChhH
Q psy3049 64 RLSGDISLLINLR---TLDISNN-KLRYLPS-EIGDLIYLR-ELCLNNNNLRTLPYELGKLFQIQILGLHGNP-LSKDYM 136 (157)
Q Consensus 64 ~~~~~~~~~~~L~---~L~l~~~-~~~~~~~-~~~~~~~l~-~l~l~~n~l~~l~~~~~~~~~L~~l~l~~n~-~~~~~~ 136 (157)
.+|. +..+.+++ .+++++| .++.++. .+..+++|+ .+++++|+++.+|......++|+++++++|+ +.+..+
T Consensus 119 ~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~~~L~~L~L~~n~~l~~i~~ 197 (239)
T 2xwt_C 119 MFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKNKYLTVIDK 197 (239)
T ss_dssp SCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTTCEEEEEECTTCTTCCEECT
T ss_pred cccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCCCCCCEEEcCCCCCcccCCH
Confidence 4443 33344444 4444444 4444432 244444555 5555555555444432222445555555552 444444
Q ss_pred HhhcCC
Q psy3049 137 KIYNEP 142 (157)
Q Consensus 137 ~~~~~~ 142 (157)
..|..+
T Consensus 198 ~~~~~l 203 (239)
T 2xwt_C 198 DAFGGV 203 (239)
T ss_dssp TTTTTC
T ss_pred HHhhcc
Confidence 444433
No 52
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.69 E-value=9.7e-17 Score=104.52 Aligned_cols=123 Identities=24% Similarity=0.252 Sum_probs=108.0
Q ss_pred CCCCCCC--ccchhhhcccCCCEEEecCCcceecCccccCCCCCChhhhcCcccceEecccCCCcc-ccccccccccccE
Q psy3049 1 MNDNNLT--RLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTR-LSGDISLLINLRT 77 (157)
Q Consensus 1 l~~n~i~--~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~-~~~~~~~~~~L~~ 77 (157)
+++|.++ .+|..+..+++|+.|++++|.++.+ +. +..+++|++|++++|.++. ++..+..+++|+.
T Consensus 31 l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~----------~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 99 (168)
T 2ell_A 31 LDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SN----------LPKLPKLKKLELSENRIFGGLDMLAEKLPNLTH 99 (168)
T ss_dssp CCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-SS----------CCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCE
T ss_pred CCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-hh----------hccCCCCCEEECcCCcCchHHHHHHhhCCCCCE
Confidence 5788998 8888889999999999999999876 32 4567899999999999997 5666667999999
Q ss_pred EeccCCCCCCCC--hhhhCccccceEEcCCCcccCcch----hhcCcCCCcEEEccCCCCCCh
Q psy3049 78 LDISNNKLRYLP--SEIGDLIYLRELCLNNNNLRTLPY----ELGKLFQIQILGLHGNPLSKD 134 (157)
Q Consensus 78 L~l~~~~~~~~~--~~~~~~~~l~~l~l~~n~l~~l~~----~~~~~~~L~~l~l~~n~~~~~ 134 (157)
|++++|.++.++ ..+..+++|+++++++|.++.+|. .+..+++|++++++.|.+...
T Consensus 100 L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~ 162 (168)
T 2ell_A 100 LNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEA 162 (168)
T ss_dssp EECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBC
T ss_pred EeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhc
Confidence 999999999876 678899999999999999998876 688999999999999987644
No 53
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.69 E-value=1.1e-16 Score=121.78 Aligned_cols=131 Identities=25% Similarity=0.367 Sum_probs=97.8
Q ss_pred CCCCCCCccch-hhhcccCCCEEEecCCcceecCccccCCCCCChhhhcCcccceEecccCCCcccc-ccccccccccEE
Q psy3049 1 MNDNNLTRLSG-DISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTRLS-GDISLLINLRTL 78 (157)
Q Consensus 1 l~~n~i~~l~~-~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~-~~~~~~~~L~~L 78 (157)
+++|.++.+++ ++..+++|+.|++++|.++.+++. .+..+++|++|++++|.++.++ ..+..+++|++|
T Consensus 35 Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~---------~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 105 (570)
T 2z63_A 35 LSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDG---------AYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKL 105 (570)
T ss_dssp CCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTT---------TTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEE
T ss_pred ccCCccCccChhHhhCCCCceEEECCCCcCCccCcc---------cccCchhCCEEeCcCCcCCccCHhhhcCccccccc
Confidence 46778887765 478888888888888888877653 2556777888888888877664 456777888888
Q ss_pred eccCCCCCCCCh-hhhCccccceEEcCCCcccC--cchhhcCcCCCcEEEccCCCCCChhHHhhc
Q psy3049 79 DISNNKLRYLPS-EIGDLIYLRELCLNNNNLRT--LPYELGKLFQIQILGLHGNPLSKDYMKIYN 140 (157)
Q Consensus 79 ~l~~~~~~~~~~-~~~~~~~l~~l~l~~n~l~~--l~~~~~~~~~L~~l~l~~n~~~~~~~~~~~ 140 (157)
++.+|.++.++. .+..+++|++|++++|.++. +|..++++++|+++++++|.+.+..+..++
T Consensus 106 ~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 170 (570)
T 2z63_A 106 VAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLR 170 (570)
T ss_dssp ECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGH
T ss_pred cccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHcc
Confidence 888887777654 57777888888888887774 567777888888888888887776665554
No 54
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.69 E-value=7.9e-17 Score=119.97 Aligned_cols=142 Identities=23% Similarity=0.324 Sum_probs=83.8
Q ss_pred CCCCCCCccchh-hhcccCCCEEEecCCcceecCcc-ccCC--------------CCCCh-hhhcCcccceEecccCCCc
Q psy3049 1 MNDNNLTRLSGD-ISLLINLRTLDISNNKLRYLPSE-IGAV--------------KNLSP-DLWQFTHLTALYMNDNNLT 63 (157)
Q Consensus 1 l~~n~i~~l~~~-~~~l~~L~~L~l~~~~l~~~~~~-~~~~--------------~~~~~-~~~~~~~L~~l~l~~~~~~ 63 (157)
+++|.|+.+++. +..+++|+.|++++|.++.+++. +..+ ..++. .+..+++|++|++++|.++
T Consensus 130 L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~ 209 (452)
T 3zyi_A 130 LFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK 209 (452)
T ss_dssp CCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCS
T ss_pred CCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccc
Confidence 345666665544 55666666666666666655542 1111 11122 2455666777777777776
Q ss_pred cccccccccccccEEeccCCCCCCC-ChhhhCccccceEEcCCCcccCcc-hhhcCcCCCcEEEccCCCCCChhHHhhcC
Q psy3049 64 RLSGDISLLINLRTLDISNNKLRYL-PSEIGDLIYLRELCLNNNNLRTLP-YELGKLFQIQILGLHGNPLSKDYMKIYNE 141 (157)
Q Consensus 64 ~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~l~~l~l~~n~l~~l~-~~~~~~~~L~~l~l~~n~~~~~~~~~~~~ 141 (157)
.++ .+..+.+|+.|++++|.++.+ |..+..+++|+.|++++|.++.++ ..+..+++|+++++++|.+.+..++.+..
T Consensus 210 ~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 288 (452)
T 3zyi_A 210 DMP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTP 288 (452)
T ss_dssp SCC-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTT
T ss_pred ccc-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhcc
Confidence 654 355666677777777776655 445666666777777776666553 34666666777777776666665555544
Q ss_pred CC
Q psy3049 142 PN 143 (157)
Q Consensus 142 ~~ 143 (157)
++
T Consensus 289 l~ 290 (452)
T 3zyi_A 289 LR 290 (452)
T ss_dssp CT
T ss_pred cc
Confidence 33
No 55
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.68 E-value=6.9e-18 Score=130.50 Aligned_cols=29 Identities=28% Similarity=0.337 Sum_probs=25.1
Q ss_pred CCCCCccchhhhcccCCCEEEecCCccee
Q psy3049 3 DNNLTRLSGDISLLINLRTLDISNNKLRY 31 (157)
Q Consensus 3 ~n~i~~l~~~~~~l~~L~~L~l~~~~l~~ 31 (157)
.|.++.+|.+++++++|+.|++++|.++.
T Consensus 192 ~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~ 220 (636)
T 4eco_A 192 SNNITFVSKAVMRLTKLRQFYMGNSPFVA 220 (636)
T ss_dssp SCEEEEECGGGGGCTTCCEEEEESCCCCG
T ss_pred cCCCccCCHHHhcccCCCEEECcCCcccc
Confidence 56777888889999999999999999887
No 56
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.68 E-value=4.4e-16 Score=109.95 Aligned_cols=136 Identities=21% Similarity=0.323 Sum_probs=95.8
Q ss_pred CCCCCccchhhhcccCCCEEEecCCcceecCccccCC-------------CCCChhhhcCcccceEecccCCCccccccc
Q psy3049 3 DNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAV-------------KNLSPDLWQFTHLTALYMNDNNLTRLSGDI 69 (157)
Q Consensus 3 ~n~i~~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~-------------~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~ 69 (157)
.+.++.+. .+..+++++.|++++|.+..++. +..+ ..+++ +..+++|++|++++|.++.++ .+
T Consensus 33 ~~~~~~~~-~~~~l~~L~~L~l~~~~i~~~~~-~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~-~l 108 (291)
T 1h6t_A 33 KKSVTDAV-TQNELNSIDQIIANNSDIKSVQG-IQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKDLS-SL 108 (291)
T ss_dssp CSCTTSEE-CHHHHHTCCEEECTTSCCCCCTT-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCGG-GG
T ss_pred CCCccccc-chhhcCcccEEEccCCCcccChh-HhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcCCCCh-hh
Confidence 34444432 35678999999999999988754 3222 12233 666777788888888777654 36
Q ss_pred cccccccEEeccCCCCCCCChhhhCccccceEEcCCCcccCcchhhcCcCCCcEEEccCCCCCChhHHhhcCCCChH
Q psy3049 70 SLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLRTLPYELGKLFQIQILGLHGNPLSKDYMKIYNEPNGTQ 146 (157)
Q Consensus 70 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~l~~n~l~~l~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~l~ 146 (157)
..+++|++|++++|.++.+ ..+..+++|+.|++++|.++.+ ..+..+++|+++++++|.+.+..+ +..++.++
T Consensus 109 ~~l~~L~~L~L~~n~i~~~-~~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~ 181 (291)
T 1h6t_A 109 KDLKKLKSLSLEHNGISDI-NGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQ 181 (291)
T ss_dssp TTCTTCCEEECTTSCCCCC-GGGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCC
T ss_pred ccCCCCCEEECCCCcCCCC-hhhcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEccCCccccchh--hcCCCccC
Confidence 6777888888888877766 3466778888888888888877 457788888888888888887655 55555544
No 57
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.68 E-value=6.4e-17 Score=114.69 Aligned_cols=100 Identities=22% Similarity=0.249 Sum_probs=51.2
Q ss_pred hhcCcccceEecccCCCccc-cccccccccccEEeccCCCCCC--CChhhhCccccceEEcCCCcccCc-chhhcCcCCC
Q psy3049 46 LWQFTHLTALYMNDNNLTRL-SGDISLLINLRTLDISNNKLRY--LPSEIGDLIYLRELCLNNNNLRTL-PYELGKLFQI 121 (157)
Q Consensus 46 ~~~~~~L~~l~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~l~~l~l~~n~l~~l-~~~~~~~~~L 121 (157)
+..+++|++|++++|.++.. +..+..+++|+.|++++|.++. +|..+..+++|+.|++++|.++.+ |..+..+++|
T Consensus 122 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 201 (306)
T 2z66_A 122 FLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSL 201 (306)
T ss_dssp TTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred hhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCC
Confidence 33444455555555544432 2234444555555555555442 344455555566666666665544 3345556666
Q ss_pred cEEEccCCCCCChhHHhhcCCCCh
Q psy3049 122 QILGLHGNPLSKDYMKIYNEPNGT 145 (157)
Q Consensus 122 ~~l~l~~n~~~~~~~~~~~~~~~l 145 (157)
+++++++|.+.+..+..+..++.+
T Consensus 202 ~~L~L~~N~l~~~~~~~~~~l~~L 225 (306)
T 2z66_A 202 QVLNMSHNNFFSLDTFPYKCLNSL 225 (306)
T ss_dssp CEEECTTSCCSBCCSGGGTTCTTC
T ss_pred CEEECCCCccCccChhhccCcccC
Confidence 666666666655555445444443
No 58
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.68 E-value=1.5e-16 Score=119.04 Aligned_cols=134 Identities=22% Similarity=0.272 Sum_probs=74.4
Q ss_pred CCCCCCCccch-hhhcccCCCEEEecCCcceecCccccCCCCCChhhhcCcccceEecccCCCccccc-cccccccccEE
Q psy3049 1 MNDNNLTRLSG-DISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTRLSG-DISLLINLRTL 78 (157)
Q Consensus 1 l~~n~i~~l~~-~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~-~~~~~~~L~~L 78 (157)
+++|.|+.+++ .+..+++|+.|++++|.++.+++. .+..+++|++|++++|.++.++. .+..+++|++|
T Consensus 39 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~---------~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 109 (477)
T 2id5_A 39 LGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPG---------AFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKL 109 (477)
T ss_dssp CCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTT---------TTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEE
T ss_pred CCCCccceECHhHccCCCCCCEEECCCCccCEeChh---------hhhCCccCCEEECCCCcCCccCcccccCCCCCCEE
Confidence 46677776653 477777777888877777765332 23445555566665555555543 24455555555
Q ss_pred eccCCCCCCC-ChhhhCccccceEEcCCCcccCcc-hhhcCcCCCcEEEccCCCCCChhHHhhcCCC
Q psy3049 79 DISNNKLRYL-PSEIGDLIYLRELCLNNNNLRTLP-YELGKLFQIQILGLHGNPLSKDYMKIYNEPN 143 (157)
Q Consensus 79 ~l~~~~~~~~-~~~~~~~~~l~~l~l~~n~l~~l~-~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~ 143 (157)
++++|.++.+ +..+..+++|+.|++++|.++.++ ..+..+++|+++++++|.+.+..+..+..++
T Consensus 110 ~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~ 176 (477)
T 2id5_A 110 DISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLH 176 (477)
T ss_dssp ECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCT
T ss_pred ECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccC
Confidence 5555555533 334455555555555555555432 2345555555555555555555444444433
No 59
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.68 E-value=1.1e-16 Score=115.63 Aligned_cols=135 Identities=27% Similarity=0.348 Sum_probs=115.2
Q ss_pred CCCCCCccchhhhcccCCCEEEecCCcceecCccccCCCCCChhhhcCcccceEecccCCCcccc-ccccccccccEEec
Q psy3049 2 NDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTRLS-GDISLLINLRTLDI 80 (157)
Q Consensus 2 ~~n~i~~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~-~~~~~~~~L~~L~l 80 (157)
+++.++.+|..+. ++++.|++++|++++++.. .+..+++|++|++++|.++.++ ..+..+++|++|++
T Consensus 39 ~~~~l~~iP~~~~--~~L~~L~l~~n~i~~~~~~---------~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (353)
T 2z80_A 39 SSGSLNSIPSGLT--EAVKSLDLSNNRITYISNS---------DLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDL 107 (353)
T ss_dssp CSTTCSSCCTTCC--TTCCEEECTTSCCCEECTT---------TTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred CCCCccccccccc--ccCcEEECCCCcCcccCHH---------HhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEEC
Confidence 5788899987654 5899999999999988763 2567889999999999999775 46888999999999
Q ss_pred cCCCCCCCChh-hhCccccceEEcCCCcccCcch--hhcCcCCCcEEEccCC-CCCChhHHhhcCCCChHH
Q psy3049 81 SNNKLRYLPSE-IGDLIYLRELCLNNNNLRTLPY--ELGKLFQIQILGLHGN-PLSKDYMKIYNEPNGTQK 147 (157)
Q Consensus 81 ~~~~~~~~~~~-~~~~~~l~~l~l~~n~l~~l~~--~~~~~~~L~~l~l~~n-~~~~~~~~~~~~~~~l~~ 147 (157)
++|.++.++.. +..+++|++|++++|.++.+|. .+.++++|+++++++| .+.+..+..+..++.++.
T Consensus 108 s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~ 178 (353)
T 2z80_A 108 SYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEE 178 (353)
T ss_dssp CSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEE
T ss_pred CCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCE
Confidence 99999999875 8889999999999999999987 5889999999999999 577777777877666543
No 60
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.68 E-value=1e-16 Score=112.08 Aligned_cols=146 Identities=25% Similarity=0.349 Sum_probs=89.2
Q ss_pred CCCCCCCccch-hhhcccCCCEEEecCCcceecCc-cccCCCC-------------CCh-hhhcCcccceEecccCCCcc
Q psy3049 1 MNDNNLTRLSG-DISLLINLRTLDISNNKLRYLPS-EIGAVKN-------------LSP-DLWQFTHLTALYMNDNNLTR 64 (157)
Q Consensus 1 l~~n~i~~l~~-~~~~l~~L~~L~l~~~~l~~~~~-~~~~~~~-------------~~~-~~~~~~~L~~l~l~~~~~~~ 64 (157)
+++|.++.+++ .+..+++|+.|++++|.++.++. .+..+.. ++. .+..+++|++|++++|.++.
T Consensus 59 l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 138 (276)
T 2z62_A 59 LSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQS 138 (276)
T ss_dssp CTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCC
T ss_pred CCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccce
Confidence 46777777765 47778888888888888776653 2332211 121 35556677777777777764
Q ss_pred --ccccccccccccEEeccCCCCCCCCh-hhhC---------------------------ccccceEEcCCCcccCcchh
Q psy3049 65 --LSGDISLLINLRTLDISNNKLRYLPS-EIGD---------------------------LIYLRELCLNNNNLRTLPYE 114 (157)
Q Consensus 65 --~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~---------------------------~~~l~~l~l~~n~l~~l~~~ 114 (157)
+|..+..+++|+.|++++|.++.++. .+.. ..+|+.+++++|.++.+|..
T Consensus 139 ~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~ 218 (276)
T 2z62_A 139 FKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDG 218 (276)
T ss_dssp CCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCSCCEEEEECCSSCCSCCCTT
T ss_pred ecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccCCCcccEEECCCCceeecCHh
Confidence 45566667777777777776664432 2222 22566666666766666544
Q ss_pred -hcCcCCCcEEEccCCCCCChhHHhhcCCCChHHHHHHHH
Q psy3049 115 -LGKLFQIQILGLHGNPLSKDYMKIYNEPNGTQKLLSYLL 153 (157)
Q Consensus 115 -~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~l~~l~~~~~ 153 (157)
+..+++|+++++++|++.+. ++.+..+..|..
T Consensus 219 ~~~~l~~L~~L~l~~N~~~c~-------c~~l~~l~~~~~ 251 (276)
T 2z62_A 219 IFDRLTSLQKIWLHTNPWDCS-------CPRIDYLSRWLN 251 (276)
T ss_dssp TTTTCCSCCEEECCSSCBCCC-------TTTTHHHHHHHH
T ss_pred HhcccccccEEEccCCccccc-------CCchHHHHHHHH
Confidence 46677777777777777643 334555555543
No 61
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.68 E-value=2.7e-17 Score=112.87 Aligned_cols=126 Identities=21% Similarity=0.376 Sum_probs=69.0
Q ss_pred CCCccchhhhcccCCCEEEecCCcceecCcc-ccCC--------------CCCCh-hhhcCcccceEeccc-CCCccccc
Q psy3049 5 NLTRLSGDISLLINLRTLDISNNKLRYLPSE-IGAV--------------KNLSP-DLWQFTHLTALYMND-NNLTRLSG 67 (157)
Q Consensus 5 ~i~~l~~~~~~l~~L~~L~l~~~~l~~~~~~-~~~~--------------~~~~~-~~~~~~~L~~l~l~~-~~~~~~~~ 67 (157)
.++.+|. +. .+++.|++++|+++.+++. +..+ ..+++ .+..+++|+++++++ |.++.+++
T Consensus 22 ~l~~ip~-~~--~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~ 98 (239)
T 2xwt_C 22 DIQRIPS-LP--PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDP 98 (239)
T ss_dssp SCSSCCC-CC--TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECT
T ss_pred CccccCC-CC--CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCH
Confidence 3667776 33 3899999999999998873 2211 11222 233445555555554 55554432
Q ss_pred -cccccccccEEeccCCCCCCCChhhhCccccc---eEEcCCC-cccCcchh-hcCcCCCc-EEEccCCCCCCh
Q psy3049 68 -DISLLINLRTLDISNNKLRYLPSEIGDLIYLR---ELCLNNN-NLRTLPYE-LGKLFQIQ-ILGLHGNPLSKD 134 (157)
Q Consensus 68 -~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~---~l~l~~n-~l~~l~~~-~~~~~~L~-~l~l~~n~~~~~ 134 (157)
.+..+++|++|++++|.++.+|. +..+++++ .+++++| .++.++.. +..+++|+ ++++++|.+...
T Consensus 99 ~~f~~l~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i 171 (239)
T 2xwt_C 99 DALKELPLLKFLGIFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSV 171 (239)
T ss_dssp TSEECCTTCCEEEEEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEE
T ss_pred HHhCCCCCCCEEeCCCCCCccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCccc
Confidence 34445555555555555554444 44444444 5555555 55555433 55555555 666655555533
No 62
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.67 E-value=2.1e-16 Score=124.53 Aligned_cols=141 Identities=28% Similarity=0.397 Sum_probs=91.2
Q ss_pred CCCCCC-ccchhhhcccCCCEEEecCCcce-ecCccccCCC--------------CCChhhhcCcccceEecccCCCc-c
Q psy3049 2 NDNNLT-RLSGDISLLINLRTLDISNNKLR-YLPSEIGAVK--------------NLSPDLWQFTHLTALYMNDNNLT-R 64 (157)
Q Consensus 2 ~~n~i~-~l~~~~~~l~~L~~L~l~~~~l~-~~~~~~~~~~--------------~~~~~~~~~~~L~~l~l~~~~~~-~ 64 (157)
++|.++ .+|..+..+++|+.|++++|.++ .+|..++.++ .+|..+..+++|+++++++|.++ .
T Consensus 402 ~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ 481 (768)
T 3rgz_A 402 QNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGE 481 (768)
T ss_dssp CSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSC
T ss_pred CCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCc
Confidence 455565 45566777777888888877776 3444443222 23455566666777777777666 3
Q ss_pred ccccccccccccEEeccCCCCC-CCChhhhCccccceEEcCCCccc-CcchhhcCcCCCcEEEccCCCCCChhHHhhcCC
Q psy3049 65 LSGDISLLINLRTLDISNNKLR-YLPSEIGDLIYLRELCLNNNNLR-TLPYELGKLFQIQILGLHGNPLSKDYMKIYNEP 142 (157)
Q Consensus 65 ~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~l~~l~l~~n~l~-~l~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~ 142 (157)
+|..+..+++|+.|++++|.++ .+|..+..+++|+++++++|.++ .+|..+.++++|+++++++|.+.|.+|..+...
T Consensus 482 ~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~ 561 (768)
T 3rgz_A 482 IPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQ 561 (768)
T ss_dssp CCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTT
T ss_pred CCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcc
Confidence 4555666677777777777665 45666666777777777777766 566666777777777777777776666665443
No 63
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.67 E-value=4.6e-16 Score=111.36 Aligned_cols=137 Identities=20% Similarity=0.330 Sum_probs=60.7
Q ss_pred CCCCCCcc-chhhhcccCCCEEEecCCcceecCcccc-----------CCCCCCh-hhhcCcccceEecccCCCcc---c
Q psy3049 2 NDNNLTRL-SGDISLLINLRTLDISNNKLRYLPSEIG-----------AVKNLSP-DLWQFTHLTALYMNDNNLTR---L 65 (157)
Q Consensus 2 ~~n~i~~l-~~~~~~l~~L~~L~l~~~~l~~~~~~~~-----------~~~~~~~-~~~~~~~L~~l~l~~~~~~~---~ 65 (157)
++|.++.+ |..+..+++|+.|++++|.++++|..+. .+..++. .+..+++|+++++++|.++. .
T Consensus 84 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 163 (330)
T 1xku_A 84 INNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIE 163 (330)
T ss_dssp CSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBC
T ss_pred CCCcCCeeCHHHhcCCCCCCEEECCCCcCCccChhhcccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcC
Confidence 44555544 3335555555555555555555444321 0111122 23445555555555555542 1
Q ss_pred cccccccccccEEeccCCCCCCCChhhhCccccceEEcCCCcccCc-chhhcCcCCCcEEEccCCCCCChhHHhhc
Q psy3049 66 SGDISLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLRTL-PYELGKLFQIQILGLHGNPLSKDYMKIYN 140 (157)
Q Consensus 66 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~l~~n~l~~l-~~~~~~~~~L~~l~l~~n~~~~~~~~~~~ 140 (157)
+..+..+++|+.|++++|.++.+|..+. ++|+.+++++|.++.+ +..+..+++|+++++++|.+.+..+..+.
T Consensus 164 ~~~~~~l~~L~~L~l~~n~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 237 (330)
T 1xku_A 164 NGAFQGMKKLSYIRIADTNITTIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLA 237 (330)
T ss_dssp TTGGGGCTTCCEEECCSSCCCSCCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGG
T ss_pred hhhccCCCCcCEEECCCCccccCCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhcc
Confidence 2334445555555555554444433221 3344444444444433 22344444444444444444444333333
No 64
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.67 E-value=4.7e-16 Score=103.86 Aligned_cols=119 Identities=19% Similarity=0.218 Sum_probs=99.5
Q ss_pred CCCCCCccchhhhcccCCCEEEecCCccee-cCccccCCCCCChhhhcCcccceEecccCCCcc-ccccccccccccEEe
Q psy3049 2 NDNNLTRLSGDISLLINLRTLDISNNKLRY-LPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTR-LSGDISLLINLRTLD 79 (157)
Q Consensus 2 ~~n~i~~l~~~~~~l~~L~~L~l~~~~l~~-~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~-~~~~~~~~~~L~~L~ 79 (157)
++|.++.++ .+..+++|+.|++++|.++. .++. +..+++|++|++++|.++. .+..+..+++|++|+
T Consensus 74 ~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~----------l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~ 142 (197)
T 4ezg_A 74 NNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPN----------LSGLTSLTLLDISHSAHDDSILTKINTLPKVNSID 142 (197)
T ss_dssp ESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCC----------CTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEE
T ss_pred cCCCCCcch-hhhcCCCCCEEEeECCccCcccChh----------hcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEE
Confidence 567777664 68899999999999999985 3433 4567899999999999985 566788999999999
Q ss_pred ccCCC-CCCCChhhhCccccceEEcCCCcccCcchhhcCcCCCcEEEccCCCCCC
Q psy3049 80 ISNNK-LRYLPSEIGDLIYLRELCLNNNNLRTLPYELGKLFQIQILGLHGNPLSK 133 (157)
Q Consensus 80 l~~~~-~~~~~~~~~~~~~l~~l~l~~n~l~~l~~~~~~~~~L~~l~l~~n~~~~ 133 (157)
+++|. ++.++ .+..+++|+.+++++|.++.++ .+.++++|+++++++|++.+
T Consensus 143 L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~~~-~l~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 143 LSYNGAITDIM-PLKTLPELKSLNIQFDGVHDYR-GIEDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp CCSCTBCCCCG-GGGGCSSCCEEECTTBCCCCCT-TGGGCSSCCEEEECBC----
T ss_pred ccCCCCccccH-hhcCCCCCCEEECCCCCCcChH-HhccCCCCCEEEeeCcccCC
Confidence 99997 88886 6888999999999999999887 68899999999999999865
No 65
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.67 E-value=3.8e-16 Score=124.23 Aligned_cols=36 Identities=25% Similarity=0.566 Sum_probs=23.3
Q ss_pred CCCCCCCccchhhhcccC-CCEEEecCCcceecCccc
Q psy3049 1 MNDNNLTRLSGDISLLIN-LRTLDISNNKLRYLPSEI 36 (157)
Q Consensus 1 l~~n~i~~l~~~~~~l~~-L~~L~l~~~~l~~~~~~~ 36 (157)
+++|.++.+|..+..+++ |+.|++++|.++.+|..+
T Consensus 602 Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~ 638 (876)
T 4ecn_A 602 LDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIF 638 (876)
T ss_dssp CCSSCCSCCCTTSCEECTTCCEEECCSSCCCSCCSCC
T ss_pred CcCCccccchHHHhhccccCCEEECcCCCCCcCchhh
Confidence 356666666666666666 777777777666666543
No 66
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.67 E-value=2.6e-16 Score=120.70 Aligned_cols=136 Identities=20% Similarity=0.334 Sum_probs=117.8
Q ss_pred CCCCCCccchhhhcccCCCEEEecCCcceecCccccCCCCCChhhhcCcccceEecccCCCcccc-ccccccccccEEec
Q psy3049 2 NDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTRLS-GDISLLINLRTLDI 80 (157)
Q Consensus 2 ~~n~i~~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~-~~~~~~~~L~~L~l 80 (157)
+++.++.+|..+. ++++.|++++|.++.+++. .+..+++|++|++++|.++.++ ..+..+++|++|++
T Consensus 19 ~~~~l~~ip~~~~--~~l~~L~Ls~n~l~~~~~~---------~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~L 87 (606)
T 3vq2_A 19 MDQKLSKVPDDIP--SSTKNIDLSFNPLKILKSY---------SFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLIL 87 (606)
T ss_dssp TTSCCSSCCTTSC--TTCCEEECTTSCCCEECTT---------TTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred cCCCcccCCCCCC--CCcCEEECCCCCcCEeChh---------hccCCccCcEEeCCCCcccccCHHHhhchhhcCEeEC
Confidence 5678889997664 7899999999999988763 3667889999999999999874 56889999999999
Q ss_pred cCCCCCCC-ChhhhCccccceEEcCCCcccCcc-hhhcCcCCCcEEEccCCCCCC-hhHHhhcCCCChHHH
Q psy3049 81 SNNKLRYL-PSEIGDLIYLRELCLNNNNLRTLP-YELGKLFQIQILGLHGNPLSK-DYMKIYNEPNGTQKL 148 (157)
Q Consensus 81 ~~~~~~~~-~~~~~~~~~l~~l~l~~n~l~~l~-~~~~~~~~L~~l~l~~n~~~~-~~~~~~~~~~~l~~l 148 (157)
++|.++.+ |..+..+++|++|++++|.++.++ ..++++++|+++++++|.+.+ .+|..++.++.++++
T Consensus 88 s~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L 158 (606)
T 3vq2_A 88 TGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHV 158 (606)
T ss_dssp TTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEE
T ss_pred CCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEE
Confidence 99999877 778999999999999999999887 569999999999999999986 568888887776644
No 67
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.66 E-value=3.3e-16 Score=109.11 Aligned_cols=128 Identities=24% Similarity=0.327 Sum_probs=108.9
Q ss_pred CCCCCCccchhhhcccCCCEEEecCCcceecCccccCCCCCChhhhcCcccceEecccCCCccccccccccccccEEecc
Q psy3049 2 NDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTRLSGDISLLINLRTLDIS 81 (157)
Q Consensus 2 ~~n~i~~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~ 81 (157)
++|.++.++ .+..+++|+.|++++|+++.++ . +..+++|+.|++++|.++.+++ +..+++|+.|+++
T Consensus 27 ~~~~i~~~~-~~~~l~~L~~L~l~~n~i~~l~-~----------l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~ 93 (263)
T 1xeu_A 27 GKQSVTDLV-SQKELSGVQNFNGDNSNIQSLA-G----------MQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVN 93 (263)
T ss_dssp TCSCTTSEE-CHHHHTTCSEEECTTSCCCCCT-T----------GGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECC
T ss_pred cCCCccccc-chhhcCcCcEEECcCCCcccch-H----------HhhCCCCCEEECCCCccCCChh-hccCCCCCEEECC
Confidence 568888887 6889999999999999999776 2 4567899999999999998876 8899999999999
Q ss_pred CCCCCCCChhhhCccccceEEcCCCcccCcchhhcCcCCCcEEEccCCCCCChhHHhhcCCCChHH
Q psy3049 82 NNKLRYLPSEIGDLIYLRELCLNNNNLRTLPYELGKLFQIQILGLHGNPLSKDYMKIYNEPNGTQK 147 (157)
Q Consensus 82 ~~~~~~~~~~~~~~~~l~~l~l~~n~l~~l~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~l~~ 147 (157)
+|.++.++.... ++|+.|++++|+++.++ .+.++++|+++++++|.+.+.. .+..++.++.
T Consensus 94 ~N~l~~l~~~~~--~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N~i~~~~--~l~~l~~L~~ 154 (263)
T 1xeu_A 94 RNRLKNLNGIPS--ACLSRLFLDNNELRDTD-SLIHLKNLEILSIRNNKLKSIV--MLGFLSKLEV 154 (263)
T ss_dssp SSCCSCCTTCCC--SSCCEEECCSSCCSBSG-GGTTCTTCCEEECTTSCCCBCG--GGGGCTTCCE
T ss_pred CCccCCcCcccc--CcccEEEccCCccCCCh-hhcCcccccEEECCCCcCCCCh--HHccCCCCCE
Confidence 999998876433 89999999999999886 4889999999999999999863 4655555543
No 68
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.66 E-value=2.9e-16 Score=113.92 Aligned_cols=128 Identities=28% Similarity=0.340 Sum_probs=109.7
Q ss_pred CCCCCCCccchhhhcccCCCEEEecCCcceecCccccCCCCCChhhh-cCcccceEecccCCCccccc-cccccccccEE
Q psy3049 1 MNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLW-QFTHLTALYMNDNNLTRLSG-DISLLINLRTL 78 (157)
Q Consensus 1 l~~n~i~~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~-~~~~L~~l~l~~~~~~~~~~-~~~~~~~L~~L 78 (157)
++++.++.+|..+. ..++.|++++|.++.+++.. +. .+++|++|++++|.++.+++ .+..+++|++|
T Consensus 25 c~~~~l~~iP~~~~--~~l~~L~Ls~N~l~~l~~~~---------~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L 93 (361)
T 2xot_A 25 CSKQQLPNVPQSLP--SYTALLDLSHNNLSRLRAEW---------TPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYL 93 (361)
T ss_dssp CCSSCCSSCCSSCC--TTCSEEECCSSCCCEECTTS---------SSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEE
T ss_pred eCCCCcCccCccCC--CCCCEEECCCCCCCccChhh---------hhhcccccCEEECCCCcCCccChhhccCCCCCCEE
Confidence 35788888887653 45899999999999887653 44 67899999999999998764 58899999999
Q ss_pred eccCCCCCCCCh-hhhCccccceEEcCCCcccCcc-hhhcCcCCCcEEEccCCCCCChhHHhh
Q psy3049 79 DISNNKLRYLPS-EIGDLIYLRELCLNNNNLRTLP-YELGKLFQIQILGLHGNPLSKDYMKIY 139 (157)
Q Consensus 79 ~l~~~~~~~~~~-~~~~~~~l~~l~l~~n~l~~l~-~~~~~~~~L~~l~l~~n~~~~~~~~~~ 139 (157)
++++|.++.++. .+..+++|+.|++++|+++.++ ..+..+++|++|++++|.+.+..+..+
T Consensus 94 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~ 156 (361)
T 2xot_A 94 DLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELI 156 (361)
T ss_dssp ECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGT
T ss_pred ECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHh
Confidence 999999998765 6788999999999999999874 568999999999999999998877776
No 69
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.66 E-value=4.8e-16 Score=119.25 Aligned_cols=137 Identities=16% Similarity=0.173 Sum_probs=90.9
Q ss_pred CCCCCCCccch-hhhcccCCCEEEecCCcceecCccccCCCCCChhhhcCcccceEecccCCCccc-cccccccccccEE
Q psy3049 1 MNDNNLTRLSG-DISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTRL-SGDISLLINLRTL 78 (157)
Q Consensus 1 l~~n~i~~l~~-~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~-~~~~~~~~~L~~L 78 (157)
+++|.|+.+++ .+..+++|+.|++++|++..+++. .+..+++|++|++++|.++.+ +..++.+++|++|
T Consensus 40 Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~---------~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 110 (606)
T 3t6q_A 40 FSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHED---------TFQSQHRLDTLVLTANPLIFMAETALSGPKALKHL 110 (606)
T ss_dssp CTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTT---------TTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEE
T ss_pred ccCCccCcCChhHhccCccceEEECCCCccceeChh---------hccCccccCeeeCCCCcccccChhhhcccccccEe
Confidence 56788887754 588888888888888888866432 244566677777777776654 4456666777777
Q ss_pred eccCCCCCCC-ChhhhCccccceEEcCCCcccCcc-hhhcCcCCCcEEEccCCCCCChhHHhhcCCCChH
Q psy3049 79 DISNNKLRYL-PSEIGDLIYLRELCLNNNNLRTLP-YELGKLFQIQILGLHGNPLSKDYMKIYNEPNGTQ 146 (157)
Q Consensus 79 ~l~~~~~~~~-~~~~~~~~~l~~l~l~~n~l~~l~-~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~l~ 146 (157)
++++|.++.+ +..+..+++|++|++++|.++.++ ..+..+++|+++++++|.+.+..+..++.+..++
T Consensus 111 ~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 180 (606)
T 3t6q_A 111 FFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQAT 180 (606)
T ss_dssp ECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCC
T ss_pred eccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccc
Confidence 7777776655 345666677777777777776542 2233466777777777777766666666555443
No 70
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.66 E-value=1.2e-15 Score=115.25 Aligned_cols=133 Identities=26% Similarity=0.343 Sum_probs=91.0
Q ss_pred CCCCCCCc-cchhhhcccCCCEEEecCCcceecC---ccccCCC-------------C-CChh-hhcCcccceEecccCC
Q psy3049 1 MNDNNLTR-LSGDISLLINLRTLDISNNKLRYLP---SEIGAVK-------------N-LSPD-LWQFTHLTALYMNDNN 61 (157)
Q Consensus 1 l~~n~i~~-l~~~~~~l~~L~~L~l~~~~l~~~~---~~~~~~~-------------~-~~~~-~~~~~~L~~l~l~~~~ 61 (157)
+++|.++. +|..+..+++|+.|++++|+++.++ ..++.++ . +|.. +..+++|+.+++++|.
T Consensus 331 Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~ 410 (520)
T 2z7x_B 331 FSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNI 410 (520)
T ss_dssp CCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSC
T ss_pred eECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCC
Confidence 45666665 4555677777777777777776432 2221111 0 1221 3345667777777776
Q ss_pred Ccc-ccccccccccccEEeccCCCCCCCChhhhCccccceEEcCCCcccCcchh-hcCcCCCcEEEccCCCCCChh
Q psy3049 62 LTR-LSGDISLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLRTLPYE-LGKLFQIQILGLHGNPLSKDY 135 (157)
Q Consensus 62 ~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~l~~n~l~~l~~~-~~~~~~L~~l~l~~n~~~~~~ 135 (157)
++. .+..+. ++|+.|++++|.++.+|..+..+++|+++++++|+++.+|.. +.++++|+++++++|++.+..
T Consensus 411 l~~~~~~~l~--~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c 484 (520)
T 2z7x_B 411 LTDTIFRCLP--PRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 484 (520)
T ss_dssp CCGGGGGSCC--TTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred CCcchhhhhc--ccCCEEECCCCcccccchhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCCCCcccC
Confidence 653 232222 678888888888888888777888999999999999988876 788899999999999988763
No 71
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.66 E-value=9.7e-17 Score=105.40 Aligned_cols=123 Identities=24% Similarity=0.304 Sum_probs=101.6
Q ss_pred hhhcccCCCEEEecCCcceecCccccCCCCCChhhhcC-cccceEecccCCCccccccccccccccEEeccCCCCCCCCh
Q psy3049 12 DISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQF-THLTALYMNDNNLTRLSGDISLLINLRTLDISNNKLRYLPS 90 (157)
Q Consensus 12 ~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~-~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 90 (157)
.+.++.+++.|++++|+++.++. +..+ ++|++|++++|.++.+ ..+..+++|++|++++|.++.+|.
T Consensus 14 ~~~~~~~L~~L~l~~n~l~~i~~-----------~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~ 81 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYKIPVIEN-----------LGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGE 81 (176)
T ss_dssp EEECTTSCEEEECTTSCCCSCCC-----------GGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECS
T ss_pred hcCCcCCceEEEeeCCCCchhHH-----------hhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCc
Confidence 35678899999999999997743 2233 4899999999999987 678889999999999999998875
Q ss_pred h-hhCccccceEEcCCCcccCcch--hhcCcCCCcEEEccCCCCCChhHH---hhcCCCChH
Q psy3049 91 E-IGDLIYLRELCLNNNNLRTLPY--ELGKLFQIQILGLHGNPLSKDYMK---IYNEPNGTQ 146 (157)
Q Consensus 91 ~-~~~~~~l~~l~l~~n~l~~l~~--~~~~~~~L~~l~l~~n~~~~~~~~---~~~~~~~l~ 146 (157)
. +..+++|+++++++|.++.+|. .+.++++|+++++++|++.+.... .+..++.++
T Consensus 82 ~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~ 143 (176)
T 1a9n_A 82 GLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVR 143 (176)
T ss_dssp CHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCS
T ss_pred chhhcCCCCCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccc
Confidence 4 4889999999999999999987 688999999999999998755333 355555444
No 72
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.66 E-value=6.6e-17 Score=122.67 Aligned_cols=134 Identities=19% Similarity=0.305 Sum_probs=80.8
Q ss_pred CCCCCCccc-hhhhcccCCCEEEecCCcceecCccccCCCCCChhhhcCcccceEecccCCCcccccc-ccccccccEEe
Q psy3049 2 NDNNLTRLS-GDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTRLSGD-ISLLINLRTLD 79 (157)
Q Consensus 2 ~~n~i~~l~-~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~-~~~~~~L~~L~ 79 (157)
++|.|+.++ .++..+++|++|++++|+++.+++ ..+..+++|++|++++|.++.+++. ++.+++|++|+
T Consensus 34 s~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~---------~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 104 (549)
T 2z81_A 34 SFNKITYIGHGDLRACANLQVLILKSSRINTIEG---------DAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLN 104 (549)
T ss_dssp CSSCCCEECSSTTSSCTTCCEEECTTSCCCEECT---------TTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEE
T ss_pred cCCccCccChhhhhcCCcccEEECCCCCcCccCh---------hhccccccCCEEECCCCccCccCHHHhccCCCCcEEE
Confidence 344444443 234555555555555555554432 2345566677777777777665543 66677777777
Q ss_pred ccCCCCCC--CChhhhCccccceEEcCCCc-ccCcc-hhhcCcCCCcEEEccCCCCCChhHHhhcCCCC
Q psy3049 80 ISNNKLRY--LPSEIGDLIYLRELCLNNNN-LRTLP-YELGKLFQIQILGLHGNPLSKDYMKIYNEPNG 144 (157)
Q Consensus 80 l~~~~~~~--~~~~~~~~~~l~~l~l~~n~-l~~l~-~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~ 144 (157)
+++|.++. .|..+..+++|++|++++|. +..+| ..+.++++|+++++++|.+.+..+..++.+..
T Consensus 105 Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~ 173 (549)
T 2z81_A 105 LMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRD 173 (549)
T ss_dssp CTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSE
T ss_pred CCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhcccc
Confidence 77777663 34556666777777777776 44555 34667777777777777777666666655443
No 73
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.66 E-value=2.2e-16 Score=122.19 Aligned_cols=98 Identities=19% Similarity=0.231 Sum_probs=52.6
Q ss_pred CcccceEecccCCCccccccccc--------cccccEEeccCCCCCCCChhhh--CccccceEEcCCCcccCcchhhcCc
Q psy3049 49 FTHLTALYMNDNNLTRLSGDISL--------LINLRTLDISNNKLRYLPSEIG--DLIYLRELCLNNNNLRTLPYELGKL 118 (157)
Q Consensus 49 ~~~L~~l~l~~~~~~~~~~~~~~--------~~~L~~L~l~~~~~~~~~~~~~--~~~~l~~l~l~~n~l~~l~~~~~~~ 118 (157)
+++|++|++++|.++.+|..... +++|+.|++++|.++.+|..+. .+++|+.|++++|+++.+|..+.++
T Consensus 456 l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l 535 (636)
T 4eco_A 456 GSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNS 535 (636)
T ss_dssp TCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCCBCCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGC
T ss_pred CCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCCccChhhhhccCCCcCEEECCCCCCCCcChhhhcC
Confidence 45566666666655544433221 1155566666665555555554 5555666666666655555555555
Q ss_pred CCCcEEEc------cCCCCCChhHHhhcCCCChH
Q psy3049 119 FQIQILGL------HGNPLSKDYMKIYNEPNGTQ 146 (157)
Q Consensus 119 ~~L~~l~l------~~n~~~~~~~~~~~~~~~l~ 146 (157)
++|+++++ ++|.+.+.+|..+..++.++
T Consensus 536 ~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~ 569 (636)
T 4eco_A 536 STLKGFGIRNQRDAQGNRTLREWPEGITLCPSLT 569 (636)
T ss_dssp SSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCC
T ss_pred CCCCEEECCCCcccccCcccccChHHHhcCCCCC
Confidence 56666655 33445555555555444443
No 74
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.66 E-value=5.9e-16 Score=113.15 Aligned_cols=129 Identities=19% Similarity=0.255 Sum_probs=98.7
Q ss_pred CCCCCCccchh-hhcccCCCEEEecCCcceecCccccCCCCCChhhhcCcccceEecccCCCccccc-cccccccccEEe
Q psy3049 2 NDNNLTRLSGD-ISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTRLSG-DISLLINLRTLD 79 (157)
Q Consensus 2 ~~n~i~~l~~~-~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~-~~~~~~~L~~L~ 79 (157)
++|.++.+|+. +..+++|+.|++++|.++.+++. .+..+++|++|++++|.++.+++ .+..+++|++|+
T Consensus 53 ~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~---------~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 123 (390)
T 3o6n_A 53 KNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTY---------AFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 123 (390)
T ss_dssp ESCEESEECTHHHHHCCCCSEEECTTSCCCEECTT---------TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred cCCchhhCChhHhcccccCcEEECCCCcccccChh---------hccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEE
Confidence 45677778766 67888888888888888877653 25567788888888888887654 467888888888
Q ss_pred ccCCCCCCCChh-hhCccccceEEcCCCcccCcch-hhcCcCCCcEEEccCCCCCChhHHhh
Q psy3049 80 ISNNKLRYLPSE-IGDLIYLRELCLNNNNLRTLPY-ELGKLFQIQILGLHGNPLSKDYMKIY 139 (157)
Q Consensus 80 l~~~~~~~~~~~-~~~~~~l~~l~l~~n~l~~l~~-~~~~~~~L~~l~l~~n~~~~~~~~~~ 139 (157)
+++|.++.+|.. +..+++|++|++++|.++.++. .+..+++|+++++++|.+.+.....+
T Consensus 124 L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l 185 (390)
T 3o6n_A 124 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLI 185 (390)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCCGGGC
T ss_pred CCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccccccc
Confidence 888888888765 4678888888888888887654 47788888888888888876644333
No 75
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.65 E-value=2.1e-16 Score=118.22 Aligned_cols=134 Identities=27% Similarity=0.433 Sum_probs=81.8
Q ss_pred CCCCCCCcc-chhhhcccCCCEEEecCCcceecCccccCCCCCChhhhcCcccceEecccCCCccc-cccccccccccEE
Q psy3049 1 MNDNNLTRL-SGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTRL-SGDISLLINLRTL 78 (157)
Q Consensus 1 l~~n~i~~l-~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~-~~~~~~~~~L~~L 78 (157)
+++|.|+.+ |..+.++++|+.|++++|.++.+|... +..+++|++|++++|.++.+ +..+..+++|+.|
T Consensus 63 L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~---------~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 133 (477)
T 2id5_A 63 LNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGV---------FTGLSNLTKLDISENKIVILLDYMFQDLYNLKSL 133 (477)
T ss_dssp CTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTS---------STTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred CCCCccCEeChhhhhCCccCCEEECCCCcCCccCccc---------ccCCCCCCEEECCCCccccCChhHccccccCCEE
Confidence 567888877 456899999999999999999887642 33455566666666665543 2344555566666
Q ss_pred eccCCCCCCC-ChhhhCccccceEEcCCCcccCcchh-hcCcCCCcEEEccCCCCCChhHHhhcCCC
Q psy3049 79 DISNNKLRYL-PSEIGDLIYLRELCLNNNNLRTLPYE-LGKLFQIQILGLHGNPLSKDYMKIYNEPN 143 (157)
Q Consensus 79 ~l~~~~~~~~-~~~~~~~~~l~~l~l~~n~l~~l~~~-~~~~~~L~~l~l~~n~~~~~~~~~~~~~~ 143 (157)
++.+|.++.+ +..+..+++|+.|++++|.++.++.. +.++++|+.+++++|.+.+..+..+..+.
T Consensus 134 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~ 200 (477)
T 2id5_A 134 EVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLY 200 (477)
T ss_dssp EECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCT
T ss_pred ECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCc
Confidence 6666655543 23455555566666666655555432 55555555555555555554444444433
No 76
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.65 E-value=2.1e-18 Score=115.42 Aligned_cols=121 Identities=26% Similarity=0.369 Sum_probs=105.1
Q ss_pred CCCccchhhhcccCCCEEEecCCcceecCccccCCCCCChhhhcCcccceEecccCCCccccccccccccccEEeccCCC
Q psy3049 5 NLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTRLSGDISLLINLRTLDISNNK 84 (157)
Q Consensus 5 ~i~~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~ 84 (157)
.++.+|..+..+++|+.|++++|+++.+| . +..+++|++|++++|.++.+|..+..+++|+.|++++|.
T Consensus 36 ~l~~l~~~~~~l~~L~~L~ls~n~l~~l~-~----------~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~ 104 (198)
T 1ds9_A 36 PIEKMDATLSTLKACKHLALSTNNIEKIS-S----------LSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQ 104 (198)
T ss_dssp TCCCCHHHHHHTTTCSEEECSEEEESCCC-C----------HHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEE
T ss_pred cHhhhhHHHhcCCCCCEEECCCCCCcccc-c----------cccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCc
Confidence 45566668999999999999999998876 3 567789999999999999888777778999999999999
Q ss_pred CCCCChhhhCccccceEEcCCCcccCcch--hhcCcCCCcEEEccCCCCCChhHH
Q psy3049 85 LRYLPSEIGDLIYLRELCLNNNNLRTLPY--ELGKLFQIQILGLHGNPLSKDYMK 137 (157)
Q Consensus 85 ~~~~~~~~~~~~~l~~l~l~~n~l~~l~~--~~~~~~~L~~l~l~~n~~~~~~~~ 137 (157)
++.+| .+..+++|+++++++|.++.++. .+..+++|+++++++|++.+.++.
T Consensus 105 l~~l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~ 158 (198)
T 1ds9_A 105 IASLS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKE 158 (198)
T ss_dssp CCCHH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHT
T ss_pred CCcCC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCcccccccc
Confidence 98876 57788999999999999998775 588999999999999998877554
No 77
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.65 E-value=1.6e-15 Score=116.71 Aligned_cols=139 Identities=24% Similarity=0.346 Sum_probs=88.9
Q ss_pred CCCCCCCccchhhhcccCCCEEEecCCcceecCccccCCCCC------------ChhhhcCcccceEecccCCCcccccc
Q psy3049 1 MNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNL------------SPDLWQFTHLTALYMNDNNLTRLSGD 68 (157)
Q Consensus 1 l~~n~i~~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~------------~~~~~~~~~L~~l~l~~~~~~~~~~~ 68 (157)
+++|.|+.++ .+..+++|+.|++++|+++.+++ +..++.+ ++.+..+++|+.|++++|.++.++ .
T Consensus 50 l~~n~i~~l~-~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l~-~ 126 (605)
T 1m9s_A 50 ANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKIKDLSSLKDLKKLKSLSLEHNGISDIN-G 126 (605)
T ss_dssp CTTCCCCCCT-TGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCCCTTSTTCTTCCEEECTTSCCCCCG-G
T ss_pred CcCCCCCCCh-HHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCCCCCChhhccCCCCCEEEecCCCCCCCc-c
Confidence 3556666664 46667777777777777766554 2221111 124556677777777777776653 4
Q ss_pred ccccccccEEeccCCCCCCCChhhhCccccceEEcCCCcccCcchhhcCcCCCcEEEccCCCCCChhHHhhcCCCChH
Q psy3049 69 ISLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLRTLPYELGKLFQIQILGLHGNPLSKDYMKIYNEPNGTQ 146 (157)
Q Consensus 69 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~l~~n~l~~l~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~l~ 146 (157)
+..+++|+.|++++|.++.+ ..+..+++|+.|++++|.++.++. +..+++|+.|+|++|.+.+. ..+..++.|+
T Consensus 127 l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~ 200 (605)
T 1m9s_A 127 LVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISDL--RALAGLKNLD 200 (605)
T ss_dssp GGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCBC--GGGTTCTTCS
T ss_pred ccCCCccCEEECCCCccCCc-hhhcccCCCCEEECcCCcCCCchh-hccCCCCCEEECcCCCCCCC--hHHccCCCCC
Confidence 56677777777777777766 456677777777777777776655 67777777777777777764 2344444443
No 78
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.65 E-value=7.4e-16 Score=118.38 Aligned_cols=32 Identities=16% Similarity=0.025 Sum_probs=16.8
Q ss_pred hcCcCCCcEEEccCCCCCChhHHhhcCCCChH
Q psy3049 115 LGKLFQIQILGLHGNPLSKDYMKIYNEPNGTQ 146 (157)
Q Consensus 115 ~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~l~ 146 (157)
+..+++|++|++++|.+.+..+..++.++.++
T Consensus 250 l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 281 (597)
T 3oja_B 250 LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLE 281 (597)
T ss_dssp GGGCTTCSEEECCSSCCCEEESGGGTTCSSCC
T ss_pred hccCCCCCEEECCCCccCCCCHHHhcCccCCC
Confidence 34445555555555555555555555444443
No 79
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.65 E-value=5.9e-16 Score=116.85 Aligned_cols=120 Identities=28% Similarity=0.384 Sum_probs=90.1
Q ss_pred CCCCCCCccchhhhcccCCCEEEecCCcceecCccccCCCCCChhhhcCcccceEecccCCCccc-cccccccccccEEe
Q psy3049 1 MNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTRL-SGDISLLINLRTLD 79 (157)
Q Consensus 1 l~~n~i~~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~-~~~~~~~~~L~~L~ 79 (157)
+++|.++.+|..+. ++++.|++++|.++.+++. .+..+++|++|++++|.++.+ |..+..+++|++|+
T Consensus 7 ls~n~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~---------~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 75 (520)
T 2z7x_B 7 RSKNGLIHVPKDLS--QKTTILNISQNYISELWTS---------DILSLSKLRILIISHNRIQYLDISVFKFNQELEYLD 75 (520)
T ss_dssp CTTSCCSSCCCSCC--TTCSEEECCSSCCCCCCHH---------HHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEE
T ss_pred cCCCCccccccccc--ccccEEECCCCcccccChh---------hccccccccEEecCCCccCCcChHHhhcccCCCEEe
Confidence 46788888887665 7888888888888876542 355677788888888887765 45677777888888
Q ss_pred ccCCCCCCCChhhhCccccceEEcCCCcccC--cchhhcCcCCCcEEEccCCCCCC
Q psy3049 80 ISNNKLRYLPSEIGDLIYLRELCLNNNNLRT--LPYELGKLFQIQILGLHGNPLSK 133 (157)
Q Consensus 80 l~~~~~~~~~~~~~~~~~l~~l~l~~n~l~~--l~~~~~~~~~L~~l~l~~n~~~~ 133 (157)
+++|.++.+|.. .+++|++|++++|.++. +|..++++++|+++++++|.+.+
T Consensus 76 Ls~N~l~~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~ 129 (520)
T 2z7x_B 76 LSHNKLVKISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK 129 (520)
T ss_dssp CCSSCCCEEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG
T ss_pred cCCCceeecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch
Confidence 888877777655 67778888888888775 45667788888888888877765
No 80
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.64 E-value=1.5e-15 Score=116.08 Aligned_cols=107 Identities=29% Similarity=0.357 Sum_probs=94.7
Q ss_pred CCCEEEecCCcceecCccccCCCCCChhhhcCcccceEecccCCCccccccccccccccEEeccCCCCCCCChhhhCccc
Q psy3049 18 NLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGDLIY 97 (157)
Q Consensus 18 ~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 97 (157)
.|+.|++++|.++.+|. +..+++|+.|++++|.++.+|..++.+++|+.|++++|.++.+| .+..+++
T Consensus 442 ~L~~L~Ls~n~l~~lp~-----------~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~ 509 (567)
T 1dce_A 442 DVRVLHLAHKDLTVLCH-----------LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD-GVANLPR 509 (567)
T ss_dssp TCSEEECTTSCCSSCCC-----------GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSS
T ss_pred CceEEEecCCCCCCCcC-----------ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCCCc-ccCCCCC
Confidence 58899999999987764 44677899999999999998888999999999999999999888 7888999
Q ss_pred cceEEcCCCcccCc--chhhcCcCCCcEEEccCCCCCChhH
Q psy3049 98 LRELCLNNNNLRTL--PYELGKLFQIQILGLHGNPLSKDYM 136 (157)
Q Consensus 98 l~~l~l~~n~l~~l--~~~~~~~~~L~~l~l~~n~~~~~~~ 136 (157)
|+.|++++|.++.+ |..++.+++|+.+++++|++++.++
T Consensus 510 L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~ 550 (567)
T 1dce_A 510 LQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEG 550 (567)
T ss_dssp CCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSS
T ss_pred CcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCcc
Confidence 99999999999987 7889999999999999999887644
No 81
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.64 E-value=1.3e-16 Score=113.57 Aligned_cols=86 Identities=26% Similarity=0.342 Sum_probs=47.0
Q ss_pred hcCcccceEecccCCCccccc----cccccccccEEeccCCCCCCCC--hhhhCccccceEEcCCCcccCcchhhcCcCC
Q psy3049 47 WQFTHLTALYMNDNNLTRLSG----DISLLINLRTLDISNNKLRYLP--SEIGDLIYLRELCLNNNNLRTLPYELGKLFQ 120 (157)
Q Consensus 47 ~~~~~L~~l~l~~~~~~~~~~----~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~~l~~l~l~~n~l~~l~~~~~~~~~ 120 (157)
..+++|++|++++|.++.++. .+..+++|+.|++++|.++..+ ..+..+++|+.|++++|.++.+|..+. ++
T Consensus 198 ~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~--~~ 275 (312)
T 1wwl_A 198 LKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLP--AK 275 (312)
T ss_dssp TSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSSCCSSCC--SE
T ss_pred ccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccChhhhhcc--CC
Confidence 344555555555555553221 1234456666666666665432 233345566666666666666665544 56
Q ss_pred CcEEEccCCCCCCh
Q psy3049 121 IQILGLHGNPLSKD 134 (157)
Q Consensus 121 L~~l~l~~n~~~~~ 134 (157)
|+++++++|.+.+.
T Consensus 276 L~~L~Ls~N~l~~~ 289 (312)
T 1wwl_A 276 LSVLDLSYNRLDRN 289 (312)
T ss_dssp EEEEECCSSCCCSC
T ss_pred ceEEECCCCCCCCC
Confidence 66666666666655
No 82
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.64 E-value=3.3e-15 Score=107.45 Aligned_cols=140 Identities=22% Similarity=0.369 Sum_probs=77.2
Q ss_pred CCCCCCccchhhhcccCCCEEEecCCcceecCccccCCCCC------------ChhhhcCcccceEecccCCCccccccc
Q psy3049 2 NDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNL------------SPDLWQFTHLTALYMNDNNLTRLSGDI 69 (157)
Q Consensus 2 ~~n~i~~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~------------~~~~~~~~~L~~l~l~~~~~~~~~~~~ 69 (157)
++|.++.+++ +..+++|+.|++++|.+..++. +..++.+ ...+..+++|+.+++++|.++.++. +
T Consensus 163 ~~~~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~-~ 239 (347)
T 4fmz_A 163 TESKVKDVTP-IANLTDLYSLSLNYNQIEDISP-LASLTSLHYFTAYVNQITDITPVANMTRLNSLKIGNNKITDLSP-L 239 (347)
T ss_dssp CSSCCCCCGG-GGGCTTCSEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGG-G
T ss_pred cCCCcCCchh-hccCCCCCEEEccCCccccccc-ccCCCccceeecccCCCCCCchhhcCCcCCEEEccCCccCCCcc-h
Confidence 4555555544 5666666666666666665543 2111110 0114455666666666666665544 5
Q ss_pred cccccccEEeccCCCCCCCChhhhCccccceEEcCCCcccCcchhhcCcCCCcEEEccCCCCCChhHHhhcCCCChH
Q psy3049 70 SLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLRTLPYELGKLFQIQILGLHGNPLSKDYMKIYNEPNGTQ 146 (157)
Q Consensus 70 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~l~~n~l~~l~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~l~ 146 (157)
..+++|+.|++++|.++.+ ..+..+++|+.+++++|.++.++ .+..+++|+++++++|.+.+..++.++.++.++
T Consensus 240 ~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~ 314 (347)
T 4fmz_A 240 ANLSQLTWLEIGTNQISDI-NAVKDLTKLKMLNVGSNQISDIS-VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLT 314 (347)
T ss_dssp TTCTTCCEEECCSSCCCCC-GGGTTCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCS
T ss_pred hcCCCCCEEECCCCccCCC-hhHhcCCCcCEEEccCCccCCCh-hhcCCCCCCEEECcCCcCCCcChhHhhccccCC
Confidence 5566666666666665554 23455566666666666665553 345556666666666666655555555554443
No 83
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.63 E-value=1.4e-15 Score=116.83 Aligned_cols=129 Identities=19% Similarity=0.255 Sum_probs=101.1
Q ss_pred CCCCCCccchh-hhcccCCCEEEecCCcceecCccccCCCCCChhhhcCcccceEecccCCCccccc-cccccccccEEe
Q psy3049 2 NDNNLTRLSGD-ISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTRLSG-DISLLINLRTLD 79 (157)
Q Consensus 2 ~~n~i~~l~~~-~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~-~~~~~~~L~~L~ 79 (157)
++|.++.+|+. +..+++|+.|++++|.++.+++. .+..+++|++|++++|.++.+++ .++.+++|++|+
T Consensus 59 ~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~---------~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 129 (597)
T 3oja_B 59 KNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTY---------AFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 129 (597)
T ss_dssp SSCEESEECTHHHHHCCCCSEEECTTSCCCEECTT---------TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred eCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChH---------HhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEE
Confidence 56677778876 67888899999998888877653 25567788889998888887754 467888889999
Q ss_pred ccCCCCCCCChh-hhCccccceEEcCCCcccCcch-hhcCcCCCcEEEccCCCCCChhHHhh
Q psy3049 80 ISNNKLRYLPSE-IGDLIYLRELCLNNNNLRTLPY-ELGKLFQIQILGLHGNPLSKDYMKIY 139 (157)
Q Consensus 80 l~~~~~~~~~~~-~~~~~~l~~l~l~~n~l~~l~~-~~~~~~~L~~l~l~~n~~~~~~~~~~ 139 (157)
+++|.++.+|.. +..+++|++|++++|.++.++. .+..+++|++|++++|.+.+.....+
T Consensus 130 L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l 191 (597)
T 3oja_B 130 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLI 191 (597)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCCGGGC
T ss_pred eeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcChhhh
Confidence 988888888765 5788888899998888886654 57888888999988888887654443
No 84
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.63 E-value=1.9e-15 Score=115.45 Aligned_cols=129 Identities=28% Similarity=0.340 Sum_probs=96.3
Q ss_pred CCCCCCCccchhhhcccCCCEEEecCCcceecCccccCC----------CCCChhhhcCcccceEecccCCCcccccccc
Q psy3049 1 MNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAV----------KNLSPDLWQFTHLTALYMNDNNLTRLSGDIS 70 (157)
Q Consensus 1 l~~n~i~~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~----------~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~ 70 (157)
+++|.|+.+|. +.. +|+.|++++|.++.+|.....+ ..+|. .+++|+.|++++|.++.+|. +.
T Consensus 107 Ls~N~l~~ip~-l~~--~L~~L~Ls~N~l~~lp~~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~L~~lp~-l~ 179 (571)
T 3cvr_A 107 ACDNRLSTLPE-LPA--SLKHLDVDNNQLTMLPELPALLEYINADNNQLTMLPE---LPTSLEVLSVRNNQLTFLPE-LP 179 (571)
T ss_dssp CCSSCCSCCCC-CCT--TCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSCCCC-CC
T ss_pred ccCCCCCCcch-hhc--CCCEEECCCCcCCCCCCcCccccEEeCCCCccCcCCC---cCCCcCEEECCCCCCCCcch-hh
Confidence 35566666665 433 6666666666666665522111 12232 34678999999999988877 54
Q ss_pred ccccccEEeccCCCCCCCChhhhCcccc-------ceEEcCCCcccCcchhhcCcCCCcEEEccCCCCCChhHHhhcC
Q psy3049 71 LLINLRTLDISNNKLRYLPSEIGDLIYL-------RELCLNNNNLRTLPYELGKLFQIQILGLHGNPLSKDYMKIYNE 141 (157)
Q Consensus 71 ~~~~L~~L~l~~~~~~~~~~~~~~~~~l-------~~l~l~~n~l~~l~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~ 141 (157)
++|+.|++++|.++.+|. +.. +| +.|++++|.++.+|..+..+++|+++++++|++++..|..+..
T Consensus 180 --~~L~~L~Ls~N~L~~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~ 252 (571)
T 3cvr_A 180 --ESLEALDVSTNLLESLPA-VPV--RNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLSSRIRESLSQ 252 (571)
T ss_dssp --TTCCEEECCSSCCSSCCC-CC----------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSSCCHHHHHHHHH
T ss_pred --CCCCEEECcCCCCCchhh-HHH--hhhcccccceEEecCCCcceecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHH
Confidence 889999999999998887 543 77 9999999999999998888999999999999999999988764
No 85
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.63 E-value=3.4e-15 Score=106.84 Aligned_cols=89 Identities=31% Similarity=0.387 Sum_probs=43.5
Q ss_pred ccceEecccCCCccc-cccccccccccEEeccCCCCCCCCh-hhhCccccceEEcCCCcccCcchhhcCcCCCcEEEccC
Q psy3049 51 HLTALYMNDNNLTRL-SGDISLLINLRTLDISNNKLRYLPS-EIGDLIYLRELCLNNNNLRTLPYELGKLFQIQILGLHG 128 (157)
Q Consensus 51 ~L~~l~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~l~~l~l~~n~l~~l~~~~~~~~~L~~l~l~~ 128 (157)
+|+.+++++|.++.+ +..+..+++|+.|++++|.++.++. .+..+++|+.+++++|.++.+|..+..+++|+++++++
T Consensus 193 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~ 272 (330)
T 1xku_A 193 SLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHN 272 (330)
T ss_dssp TCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCTTTTTCSSCCEEECCS
T ss_pred cCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCccCChhhccCCCcCEEECCC
Confidence 444455555544433 2334444555555555555544332 34444555555555555555555455555555555555
Q ss_pred CCCCChhHHhh
Q psy3049 129 NPLSKDYMKIY 139 (157)
Q Consensus 129 n~~~~~~~~~~ 139 (157)
|.+++..+..|
T Consensus 273 N~i~~~~~~~f 283 (330)
T 1xku_A 273 NNISAIGSNDF 283 (330)
T ss_dssp SCCCCCCTTSS
T ss_pred CcCCccChhhc
Confidence 55554444433
No 86
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.63 E-value=1.9e-15 Score=110.39 Aligned_cols=125 Identities=25% Similarity=0.287 Sum_probs=92.2
Q ss_pred CCCCCCccchhhhcccCCCEEEecCCcceecCccccCCCCCChhhhcCcccceEecccCCCccccccccccccccEEecc
Q psy3049 2 NDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTRLSGDISLLINLRTLDIS 81 (157)
Q Consensus 2 ~~n~i~~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~ 81 (157)
++|.++.+ +.+..+++|+.|++++|.++.+++ ..+..+++|+.|++++|.++.++..+..+++|+.|+++
T Consensus 234 ~~n~l~~~-~~l~~l~~L~~L~Ls~n~l~~~~~---------~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~ 303 (390)
T 3o6n_A 234 QHNNLTDT-AWLLNYPGLVEVDLSYNELEKIMY---------HPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLS 303 (390)
T ss_dssp CSSCCCCC-GGGGGCTTCSEEECCSSCCCEEES---------GGGTTCSSCCEEECCSSCCCEEECSSSCCTTCCEEECC
T ss_pred CCCCCccc-HHHcCCCCccEEECCCCcCCCcCh---------hHccccccCCEEECCCCcCcccCcccCCCCCCCEEECC
Confidence 44555544 245666667777777766665432 23556778888888888888777666778888888888
Q ss_pred CCCCCCCChhhhCccccceEEcCCCcccCcchhhcCcCCCcEEEccCCCCCChhHHh
Q psy3049 82 NNKLRYLPSEIGDLIYLRELCLNNNNLRTLPYELGKLFQIQILGLHGNPLSKDYMKI 138 (157)
Q Consensus 82 ~~~~~~~~~~~~~~~~l~~l~l~~n~l~~l~~~~~~~~~L~~l~l~~n~~~~~~~~~ 138 (157)
+|.++.+|..+..+++|+.|++++|.++.++ +..+++|+++++++|++.+.....
T Consensus 304 ~n~l~~~~~~~~~l~~L~~L~L~~N~i~~~~--~~~~~~L~~L~l~~N~~~~~~~~~ 358 (390)
T 3o6n_A 304 HNHLLHVERNQPQFDRLENLYLDHNSIVTLK--LSTHHTLKNLTLSHNDWDCNSLRA 358 (390)
T ss_dssp SSCCCCCGGGHHHHTTCSEEECCSSCCCCCC--CCTTCCCSEEECCSSCEEHHHHHH
T ss_pred CCcceecCccccccCcCCEEECCCCccceeC--chhhccCCEEEcCCCCccchhHHH
Confidence 8888888877777888888888888888775 567788888888888887654443
No 87
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.63 E-value=3.4e-15 Score=115.98 Aligned_cols=142 Identities=27% Similarity=0.296 Sum_probs=69.0
Q ss_pred CCCCCCCccchh-hhcccCCCEEEecCCcceecCcc-cc-------------CCCCCCh-hhhcCcccceEecccCCCcc
Q psy3049 1 MNDNNLTRLSGD-ISLLINLRTLDISNNKLRYLPSE-IG-------------AVKNLSP-DLWQFTHLTALYMNDNNLTR 64 (157)
Q Consensus 1 l~~n~i~~l~~~-~~~l~~L~~L~l~~~~l~~~~~~-~~-------------~~~~~~~-~~~~~~~L~~l~l~~~~~~~ 64 (157)
+++|.|+.+++. +..+++|+.|++++|.++.+++. ++ .+..+|+ .+..+++|++|++++|.++.
T Consensus 32 Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~ 111 (680)
T 1ziw_A 32 LTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQK 111 (680)
T ss_dssp CCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCC
T ss_pred CCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCc
Confidence 456667766654 67777777777777777655432 11 1111222 23444445555555554444
Q ss_pred cc-ccccccccccEEeccCCCCCCC-ChhhhCccccceEEcCCCcccCcchh-h--cCcCCCcEEEccCCCCCChhHHhh
Q psy3049 65 LS-GDISLLINLRTLDISNNKLRYL-PSEIGDLIYLRELCLNNNNLRTLPYE-L--GKLFQIQILGLHGNPLSKDYMKIY 139 (157)
Q Consensus 65 ~~-~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~l~~l~l~~n~l~~l~~~-~--~~~~~L~~l~l~~n~~~~~~~~~~ 139 (157)
++ ..++.+++|++|++++|.++.. +..+..+++|+++++++|.++.++.. + ..+++|+++++++|.+.+..+..+
T Consensus 112 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~ 191 (680)
T 1ziw_A 112 IKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCF 191 (680)
T ss_dssp CCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGG
T ss_pred cChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccChhhh
Confidence 33 2344444555555555544433 22344445555555555555444322 2 133455555555555555544444
Q ss_pred cCC
Q psy3049 140 NEP 142 (157)
Q Consensus 140 ~~~ 142 (157)
..+
T Consensus 192 ~~l 194 (680)
T 1ziw_A 192 HAI 194 (680)
T ss_dssp GGS
T ss_pred hhh
Confidence 443
No 88
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.63 E-value=2.4e-15 Score=115.65 Aligned_cols=138 Identities=20% Similarity=0.319 Sum_probs=99.0
Q ss_pred CCCCCCccchhhhcccCCCEEEecCCcceecCccccCCC-------------CCChhhhcCcccceEecccCCCcccccc
Q psy3049 2 NDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVK-------------NLSPDLWQFTHLTALYMNDNNLTRLSGD 68 (157)
Q Consensus 2 ~~n~i~~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~-------------~~~~~~~~~~~L~~l~l~~~~~~~~~~~ 68 (157)
+.+.++.+. .+..+.+|+.|++++|.+..++. +..++ .+++ +..+++|+.|++++|.++.++ .
T Consensus 29 ~~~~i~~~~-~~~~L~~L~~L~l~~n~i~~l~~-l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~-~ 104 (605)
T 1m9s_A 29 KKKSVTDAV-TQNELNSIDQIIANNSDIKSVQG-IQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKIKDLS-S 104 (605)
T ss_dssp TCSCTTSEE-CHHHHTTCCCCBCTTCCCCCCTT-GGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCCCT-T
T ss_pred cCCCccccc-chhcCCCCCEEECcCCCCCCChH-HccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCCCCCCh-h
Confidence 445566553 35788999999999999988763 33221 1222 666777778888887777654 5
Q ss_pred ccccccccEEeccCCCCCCCChhhhCccccceEEcCCCcccCcchhhcCcCCCcEEEccCCCCCChhHHhhcCCCChHH
Q psy3049 69 ISLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLRTLPYELGKLFQIQILGLHGNPLSKDYMKIYNEPNGTQK 147 (157)
Q Consensus 69 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~l~~n~l~~l~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~l~~ 147 (157)
+..+++|+.|++++|.++.++ .+..+++|+.|++++|.++.+ ..+..+++|+.|+|++|.+.+..+ +..++.|+.
T Consensus 105 l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~ 179 (605)
T 1m9s_A 105 LKDLKKLKSLSLEHNGISDIN-GLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQN 179 (605)
T ss_dssp STTCTTCCEEECTTSCCCCCG-GGGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCE
T ss_pred hccCCCCCEEEecCCCCCCCc-cccCCCccCEEECCCCccCCc-hhhcccCCCCEEECcCCcCCCchh--hccCCCCCE
Confidence 667778888888888877653 466778888888888888877 557788888888888888887766 655555543
No 89
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.63 E-value=1.2e-15 Score=109.38 Aligned_cols=147 Identities=24% Similarity=0.373 Sum_probs=103.2
Q ss_pred CCCCCCCc---cchhhhcccCCCEEEecCCcceecCcccc-CC----------CCC-ChhhhcCcccceEecccCCCccc
Q psy3049 1 MNDNNLTR---LSGDISLLINLRTLDISNNKLRYLPSEIG-AV----------KNL-SPDLWQFTHLTALYMNDNNLTRL 65 (157)
Q Consensus 1 l~~n~i~~---l~~~~~~l~~L~~L~l~~~~l~~~~~~~~-~~----------~~~-~~~~~~~~~L~~l~l~~~~~~~~ 65 (157)
+++|.++. .+..+..+ +|+.|++++|.++.+|..+. .+ ..+ +..+..+++|+.|++++|.++.+
T Consensus 154 l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~ 232 (332)
T 2ft3_A 154 MGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMI 232 (332)
T ss_dssp CCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSSCCSSSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCC
T ss_pred CCCCccccCCCCcccccCC-ccCEEECcCCCCCccCccccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcC
Confidence 35666652 23345555 77777777777776665432 11 112 23466778888888888888876
Q ss_pred cc-cccccccccEEeccCCCCCCCChhhhCccccceEEcCCCcccCcchh-hcC------cCCCcEEEccCCCCC--Chh
Q psy3049 66 SG-DISLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLRTLPYE-LGK------LFQIQILGLHGNPLS--KDY 135 (157)
Q Consensus 66 ~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~l~~n~l~~l~~~-~~~------~~~L~~l~l~~n~~~--~~~ 135 (157)
++ .+..+++|+.|++++|.++.+|..+..+++|+.+++++|.++.++.. +.. .+.++.+++.+|++. +..
T Consensus 233 ~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~ 312 (332)
T 2ft3_A 233 ENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQ 312 (332)
T ss_dssp CTTGGGGCTTCCEEECCSSCCCBCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSC
T ss_pred ChhHhhCCCCCCEEECCCCcCeecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccC
Confidence 54 57788888899998888888888888888889999998888877643 332 356888888888887 566
Q ss_pred HHhhcCCCChHHH
Q psy3049 136 MKIYNEPNGTQKL 148 (157)
Q Consensus 136 ~~~~~~~~~l~~l 148 (157)
+..|..++.++.+
T Consensus 313 ~~~~~~l~~L~~l 325 (332)
T 2ft3_A 313 PATFRCVTDRLAI 325 (332)
T ss_dssp GGGGTTBCCSTTE
T ss_pred cccccccchhhhh
Confidence 6777766666543
No 90
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.63 E-value=2.8e-15 Score=107.43 Aligned_cols=139 Identities=25% Similarity=0.397 Sum_probs=107.8
Q ss_pred CCCCCCCccchh-hhcccCCCEEEecCCccee---cCccccC------------CCCCChhhhcCcccceEecccCCCcc
Q psy3049 1 MNDNNLTRLSGD-ISLLINLRTLDISNNKLRY---LPSEIGA------------VKNLSPDLWQFTHLTALYMNDNNLTR 64 (157)
Q Consensus 1 l~~n~i~~l~~~-~~~l~~L~~L~l~~~~l~~---~~~~~~~------------~~~~~~~~~~~~~L~~l~l~~~~~~~ 64 (157)
+++|.|+.+++. +..+++|+.|++++|.++. .+..+.. +..+|..+. ++|+.|++++|.++.
T Consensus 130 l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~l~~~~~--~~L~~L~l~~n~i~~ 207 (332)
T 2ft3_A 130 IHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLP--ETLNELHLDHNKIQA 207 (332)
T ss_dssp CCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSSCCSSSC--SSCSCCBCCSSCCCC
T ss_pred CCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCCccCEEECcCCCCCccCcccc--CCCCEEECCCCcCCc
Confidence 456777777654 7778888888888887753 2222221 122333322 578888999998887
Q ss_pred cc-ccccccccccEEeccCCCCCCCCh-hhhCccccceEEcCCCcccCcchhhcCcCCCcEEEccCCCCCChhHHhhcC
Q psy3049 65 LS-GDISLLINLRTLDISNNKLRYLPS-EIGDLIYLRELCLNNNNLRTLPYELGKLFQIQILGLHGNPLSKDYMKIYNE 141 (157)
Q Consensus 65 ~~-~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~l~~l~l~~n~l~~l~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~ 141 (157)
++ ..+..+++|+.|++++|.++.++. .+..+++|+.+++++|+++.+|..+..+++|+++++++|.+.+..+..|..
T Consensus 208 ~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~ 286 (332)
T 2ft3_A 208 IELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCP 286 (332)
T ss_dssp CCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCBCCTTGGGCTTCCEEECCSSCCCBCCTTSSSC
T ss_pred cCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCeecChhhhcCccCCEEECCCCCCCccChhHccc
Confidence 65 567888999999999999987754 788899999999999999999998999999999999999999888777764
No 91
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.62 E-value=8.7e-15 Score=95.65 Aligned_cols=105 Identities=33% Similarity=0.505 Sum_probs=91.8
Q ss_pred CCCEEEecCCcceecCccccCCCCCChhhhcCcccceEecccCCCccc-cccccccccccEEeccCCCCCCCChh-hhCc
Q psy3049 18 NLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTRL-SGDISLLINLRTLDISNNKLRYLPSE-IGDL 95 (157)
Q Consensus 18 ~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~ 95 (157)
..+.++++++.++++|+.+ .+.+++|++++|.++.+ +..+..+.+|++|++++|.++.++.. +..+
T Consensus 10 ~~~~l~~s~n~l~~ip~~~------------~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l 77 (170)
T 3g39_A 10 SGTTVDCSGKSLASVPTGI------------PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKL 77 (170)
T ss_dssp ETTEEECTTSCCSSCCSCC------------CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTC
T ss_pred CCCEEEeCCCCcCccCccC------------CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCC
Confidence 4678999999999988754 15789999999999987 45688899999999999999988764 6789
Q ss_pred cccceEEcCCCcccCcchh-hcCcCCCcEEEccCCCCCCh
Q psy3049 96 IYLRELCLNNNNLRTLPYE-LGKLFQIQILGLHGNPLSKD 134 (157)
Q Consensus 96 ~~l~~l~l~~n~l~~l~~~-~~~~~~L~~l~l~~n~~~~~ 134 (157)
++|++|++++|+++.++.. +..+++|+++++++|++.+.
T Consensus 78 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~ 117 (170)
T 3g39_A 78 TQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCA 117 (170)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred CCCCEEECCCCccCEeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence 9999999999999998865 88999999999999999866
No 92
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.62 E-value=9e-16 Score=119.18 Aligned_cols=137 Identities=23% Similarity=0.289 Sum_probs=96.2
Q ss_pred CCCCCCccchhhhcccCCCEEEecCCcceecCcc-ccCCCC-------------C-ChhhhcCcccceEecccCCCcccc
Q psy3049 2 NDNNLTRLSGDISLLINLRTLDISNNKLRYLPSE-IGAVKN-------------L-SPDLWQFTHLTALYMNDNNLTRLS 66 (157)
Q Consensus 2 ~~n~i~~l~~~~~~l~~L~~L~l~~~~l~~~~~~-~~~~~~-------------~-~~~~~~~~~L~~l~l~~~~~~~~~ 66 (157)
+++.++.+|..+. ++++.|++++|.++.+++. ++.++. + |..+..+++|++|++++|.++.++
T Consensus 12 s~~~L~~ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~ 89 (680)
T 1ziw_A 12 SHLKLTQVPDDLP--TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLS 89 (680)
T ss_dssp CSSCCSSCCSCSC--TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCC
T ss_pred CCCCccccccccC--CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccC
Confidence 5778899997764 7899999999999987763 332211 1 344566777777777777777666
Q ss_pred c-cccccccccEEeccCCCCCCCC-hhhhCccccceEEcCCCcccCcc-hhhcCcCCCcEEEccCCCCCChhHHhhc
Q psy3049 67 G-DISLLINLRTLDISNNKLRYLP-SEIGDLIYLRELCLNNNNLRTLP-YELGKLFQIQILGLHGNPLSKDYMKIYN 140 (157)
Q Consensus 67 ~-~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~l~~l~l~~n~l~~l~-~~~~~~~~L~~l~l~~n~~~~~~~~~~~ 140 (157)
+ .+..+++|++|++++|.++.++ ..+..+++|++|++++|.++.++ ..+.++++|+++++++|.+.+..+..+.
T Consensus 90 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 166 (680)
T 1ziw_A 90 DKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELD 166 (680)
T ss_dssp TTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHG
T ss_pred hhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhh
Confidence 4 3667777777777777776664 45667777777777777777543 4466777777777777777776666553
No 93
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.62 E-value=9.1e-16 Score=116.40 Aligned_cols=135 Identities=24% Similarity=0.323 Sum_probs=112.8
Q ss_pred CCCCCCccchhhhcccCCCEEEecCCcceecCccccCCCCCChhhhcCcccceEecccCCCcccc-ccccccccccEEec
Q psy3049 2 NDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTRLS-GDISLLINLRTLDI 80 (157)
Q Consensus 2 ~~n~i~~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~-~~~~~~~~L~~L~l 80 (157)
+++.++.+|..+. ++++.|++++|.++++++. .+..+++|++|++++|.++.++ ..+..+++|++|++
T Consensus 13 ~~~~l~~ip~~~~--~~L~~L~Ls~n~l~~~~~~---------~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L 81 (549)
T 2z81_A 13 RSRSFTSIPSGLT--AAMKSLDLSFNKITYIGHG---------DLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDL 81 (549)
T ss_dssp TTSCCSSCCSCCC--TTCCEEECCSSCCCEECSS---------TTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred CCCccccccccCC--CCccEEECcCCccCccChh---------hhhcCCcccEEECCCCCcCccChhhccccccCCEEEC
Confidence 5688999998764 7899999999999987543 2567889999999999999775 56889999999999
Q ss_pred cCCCCCCCChh-hhCccccceEEcCCCcccCc--chhhcCcCCCcEEEccCCCC-CChhHHhhcCCCChHH
Q psy3049 81 SNNKLRYLPSE-IGDLIYLRELCLNNNNLRTL--PYELGKLFQIQILGLHGNPL-SKDYMKIYNEPNGTQK 147 (157)
Q Consensus 81 ~~~~~~~~~~~-~~~~~~l~~l~l~~n~l~~l--~~~~~~~~~L~~l~l~~n~~-~~~~~~~~~~~~~l~~ 147 (157)
++|.++.++.. +..+++|++|++++|.++.+ |..++++++|+++++++|.+ .+..+..+..++.+++
T Consensus 82 s~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~ 152 (549)
T 2z81_A 82 SDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNE 152 (549)
T ss_dssp TTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEE
T ss_pred CCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCe
Confidence 99999988764 89999999999999999954 56789999999999999984 4444467776666543
No 94
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.62 E-value=3.2e-15 Score=113.96 Aligned_cols=120 Identities=27% Similarity=0.417 Sum_probs=83.2
Q ss_pred CCCCCCCccchhhhcccCCCEEEecCCcceecCccccCCCCCChhhhcCcccceEecccCCCccc-cccccccccccEEe
Q psy3049 1 MNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTRL-SGDISLLINLRTLD 79 (157)
Q Consensus 1 l~~n~i~~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~-~~~~~~~~~L~~L~ 79 (157)
+++|.++.+|..+. ++++.|++++|.++.+++. .+..+++|++|++++|.++.+ +..+..+++|++|+
T Consensus 38 ls~~~L~~ip~~~~--~~L~~L~Ls~N~i~~~~~~---------~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 106 (562)
T 3a79_B 38 YSNRNLTHVPKDLP--PRTKALSLSQNSISELRMP---------DISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLD 106 (562)
T ss_dssp CTTSCCCSCCTTSC--TTCCEEECCSSCCCCCCGG---------GTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEE
T ss_pred cCCCCCccCCCCCC--CCcCEEECCCCCccccChh---------hhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEE
Confidence 35677777776553 6777888888877766542 245666777777777777765 34566777777777
Q ss_pred ccCCCCCCCChhhhCccccceEEcCCCcccCcc--hhhcCcCCCcEEEccCCCCCC
Q psy3049 80 ISNNKLRYLPSEIGDLIYLRELCLNNNNLRTLP--YELGKLFQIQILGLHGNPLSK 133 (157)
Q Consensus 80 l~~~~~~~~~~~~~~~~~l~~l~l~~n~l~~l~--~~~~~~~~L~~l~l~~n~~~~ 133 (157)
+++|.++.+|.. .+++|++|++++|.++.++ ..++++++|+++++++|.+.+
T Consensus 107 Ls~N~l~~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~ 160 (562)
T 3a79_B 107 VSHNRLQNISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQ 160 (562)
T ss_dssp CTTSCCCEECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCT
T ss_pred CCCCcCCccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCcccc
Confidence 777777766655 5677777777777777543 557777777777777777665
No 95
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.62 E-value=8.9e-16 Score=102.20 Aligned_cols=117 Identities=27% Similarity=0.394 Sum_probs=101.3
Q ss_pred CCEEEecCCcceecCccccCCCCCChhhhcCcccceEecccCCCcccccc--ccccccccEEeccCCCCCCC-ChhhhCc
Q psy3049 19 LRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTRLSGD--ISLLINLRTLDISNNKLRYL-PSEIGDL 95 (157)
Q Consensus 19 L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~-~~~~~~~ 95 (157)
-+.+++++++++++|..+. ..++.|++++|.++.+++. +..+++|++|++++|.++.+ |..+..+
T Consensus 10 ~~~l~~s~~~l~~ip~~~~------------~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l 77 (192)
T 1w8a_A 10 GTTVDCTGRGLKEIPRDIP------------LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGA 77 (192)
T ss_dssp TTEEECTTSCCSSCCSCCC------------TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTC
T ss_pred CCEEEcCCCCcCcCccCCC------------CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCc
Confidence 3789999999999887542 2689999999999988753 78999999999999999977 6788999
Q ss_pred cccceEEcCCCcccCcchh-hcCcCCCcEEEccCCCCCChhHHhhcCCCChHH
Q psy3049 96 IYLRELCLNNNNLRTLPYE-LGKLFQIQILGLHGNPLSKDYMKIYNEPNGTQK 147 (157)
Q Consensus 96 ~~l~~l~l~~n~l~~l~~~-~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~l~~ 147 (157)
++|++|++++|+++.++.. +.++++|+++++++|.+.+..+..+..++.++.
T Consensus 78 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 130 (192)
T 1w8a_A 78 SHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTS 130 (192)
T ss_dssp TTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCE
T ss_pred ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCE
Confidence 9999999999999987754 889999999999999999998888877665543
No 96
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.62 E-value=1e-14 Score=95.69 Aligned_cols=104 Identities=30% Similarity=0.487 Sum_probs=91.2
Q ss_pred CCEEEecCCcceecCccccCCCCCChhhhcCcccceEecccCCCccc-cccccccccccEEeccCCCCCCCChh-hhCcc
Q psy3049 19 LRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTRL-SGDISLLINLRTLDISNNKLRYLPSE-IGDLI 96 (157)
Q Consensus 19 L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~ 96 (157)
-+.+++++++++.+|..+. +.++.|++++|.++.+ +..+..+++|+.|++++|.++.+|.. +..++
T Consensus 14 ~~~l~~~~n~l~~iP~~~~------------~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~ 81 (174)
T 2r9u_A 14 QTLVNCQNIRLASVPAGIP------------TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLT 81 (174)
T ss_dssp SSEEECCSSCCSSCCSCCC------------TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred CcEEEeCCCCCCccCCCcC------------CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcc
Confidence 4788999999998887541 5799999999999987 45678899999999999999998765 57899
Q ss_pred ccceEEcCCCcccCcchh-hcCcCCCcEEEccCCCCCCh
Q psy3049 97 YLRELCLNNNNLRTLPYE-LGKLFQIQILGLHGNPLSKD 134 (157)
Q Consensus 97 ~l~~l~l~~n~l~~l~~~-~~~~~~L~~l~l~~n~~~~~ 134 (157)
+|+.|++++|+++.+|.. +..+++|+++++++|++.+.
T Consensus 82 ~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~ 120 (174)
T 2r9u_A 82 QLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWDCE 120 (174)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCBCTT
T ss_pred hhhEEECCCCccceeCHHHhccccCCCEEEeCCCCcccc
Confidence 999999999999998875 88999999999999999865
No 97
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.62 E-value=4.3e-15 Score=113.31 Aligned_cols=134 Identities=23% Similarity=0.304 Sum_probs=93.1
Q ss_pred CCCCCCCc-cchhhhcccCCCEEEecCCcceecCc---cccCCC-------------C-CChh-hhcCcccceEecccCC
Q psy3049 1 MNDNNLTR-LSGDISLLINLRTLDISNNKLRYLPS---EIGAVK-------------N-LSPD-LWQFTHLTALYMNDNN 61 (157)
Q Consensus 1 l~~n~i~~-l~~~~~~l~~L~~L~l~~~~l~~~~~---~~~~~~-------------~-~~~~-~~~~~~L~~l~l~~~~ 61 (157)
+++|.++. +|..+..+++|+.|++++|+++.++. .+..++ . +|.. +..+++|+.+++++|.
T Consensus 360 l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~ 439 (562)
T 3a79_B 360 FTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNM 439 (562)
T ss_dssp CCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSC
T ss_pred CCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCC
Confidence 45677775 45567778888888888887776542 222111 1 2221 3345666677777776
Q ss_pred Ccc-ccccccccccccEEeccCCCCCCCChhhhCccccceEEcCCCcccCcchh-hcCcCCCcEEEccCCCCCChhH
Q psy3049 62 LTR-LSGDISLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLRTLPYE-LGKLFQIQILGLHGNPLSKDYM 136 (157)
Q Consensus 62 ~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~l~~n~l~~l~~~-~~~~~~L~~l~l~~n~~~~~~~ 136 (157)
++. .+..+. ++|+.|++++|.++.+|..+..+++|+.+++++|+++.+|.. +..+++|+++++++|++.+..+
T Consensus 440 l~~~~~~~l~--~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~ 514 (562)
T 3a79_B 440 LTGSVFRCLP--PKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP 514 (562)
T ss_dssp CCGGGGSSCC--TTCSEEECCSSCCCCCCTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSCCBCCCHH
T ss_pred CCcchhhhhc--CcCCEEECCCCcCcccChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCCCcCCCcc
Confidence 653 222221 578888888888888888777888899999999999988877 7888899999999998887644
No 98
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.61 E-value=9.1e-16 Score=115.39 Aligned_cols=95 Identities=16% Similarity=0.136 Sum_probs=52.1
Q ss_pred cCcccceEecccCCCccc-ccccc-ccccccEEeccCCCCCCCChhhhCccccceEEcCCCcccCcchhhcCcCCCcEEE
Q psy3049 48 QFTHLTALYMNDNNLTRL-SGDIS-LLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLRTLPYELGKLFQIQILG 125 (157)
Q Consensus 48 ~~~~L~~l~l~~~~~~~~-~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~l~~n~l~~l~~~~~~~~~L~~l~ 125 (157)
.+++|++|++++|.++.. +..+. .+++|+.|++++|.++.++.. ..+++|+.|++++|.++.+|..+..+++|+.++
T Consensus 142 ~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~~-~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~ 220 (487)
T 3oja_A 142 CRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQ-VVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWIS 220 (487)
T ss_dssp GGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECC-CCCTTCCEEECCSSCCCEECGGGGGGTTCSEEE
T ss_pred CCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcccccccc-ccCCCCCEEECCCCCCCCCCHhHcCCCCccEEE
Confidence 344455555555555432 22222 445555555555555544321 235666667777777776666666777777777
Q ss_pred ccCCCCCChhHHhhcCCCC
Q psy3049 126 LHGNPLSKDYMKIYNEPNG 144 (157)
Q Consensus 126 l~~n~~~~~~~~~~~~~~~ 144 (157)
+++|.+.+ +|..+..++.
T Consensus 221 Ls~N~l~~-lp~~l~~l~~ 238 (487)
T 3oja_A 221 LRNNKLVL-IEKALRFSQN 238 (487)
T ss_dssp CTTSCCCE-ECTTCCCCTT
T ss_pred ecCCcCcc-cchhhccCCC
Confidence 77777765 3444444433
No 99
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.61 E-value=5.2e-15 Score=106.41 Aligned_cols=138 Identities=22% Similarity=0.326 Sum_probs=99.0
Q ss_pred CCCCCCccchhhhcccCCCEEEecCCcceecCccccCC-------------CCCChhhhcCcccceEecccCCCcccccc
Q psy3049 2 NDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAV-------------KNLSPDLWQFTHLTALYMNDNNLTRLSGD 68 (157)
Q Consensus 2 ~~n~i~~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~-------------~~~~~~~~~~~~L~~l~l~~~~~~~~~~~ 68 (157)
++|.++.+++ +..+++|+.+++++|.+..++. +..+ ..++. +..+++|+++++++|.++.+ +.
T Consensus 185 ~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~~~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~-~~ 260 (347)
T 4fmz_A 185 NYNQIEDISP-LASLTSLHYFTAYVNQITDITP-VANMTRLNSLKIGNNKITDLSP-LANLSQLTWLEIGTNQISDI-NA 260 (347)
T ss_dssp TTSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCC-GG
T ss_pred cCCccccccc-ccCCCccceeecccCCCCCCch-hhcCCcCCEEEccCCccCCCcc-hhcCCCCCEEECCCCccCCC-hh
Confidence 4555665544 5555555555555555554332 1111 11122 56778899999999998876 45
Q ss_pred ccccccccEEeccCCCCCCCChhhhCccccceEEcCCCcccCcc-hhhcCcCCCcEEEccCCCCCChhHHhhcCCCChH
Q psy3049 69 ISLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLRTLP-YELGKLFQIQILGLHGNPLSKDYMKIYNEPNGTQ 146 (157)
Q Consensus 69 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~l~~n~l~~l~-~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~l~ 146 (157)
+..+++|+.|++++|.++.++ .+..+++|+.+++++|.++..+ ..+..+++|+++++++|++.+..+ +..++.++
T Consensus 261 ~~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~ 336 (347)
T 4fmz_A 261 VKDLTKLKMLNVGSNQISDIS-VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMD 336 (347)
T ss_dssp GTTCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCS
T ss_pred HhcCCCcCEEEccCCccCCCh-hhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccc
Confidence 778889999999999998774 5778899999999999998554 558899999999999999998776 55555554
No 100
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.61 E-value=4.8e-16 Score=118.27 Aligned_cols=90 Identities=29% Similarity=0.381 Sum_probs=60.9
Q ss_pred hhhcCcccceEecccCCCc--cccccccccccccEEeccCCCCCCC-ChhhhCccccceEEcCCCcccCcch-hhcCcCC
Q psy3049 45 DLWQFTHLTALYMNDNNLT--RLSGDISLLINLRTLDISNNKLRYL-PSEIGDLIYLRELCLNNNNLRTLPY-ELGKLFQ 120 (157)
Q Consensus 45 ~~~~~~~L~~l~l~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~l~~l~l~~n~l~~l~~-~~~~~~~ 120 (157)
.+..+++|+.|++++|.++ .+|..+..+++|+.|++++|.++.+ |..+..+++|+.+++++|+++.++. .+.++++
T Consensus 440 ~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 519 (570)
T 2z63_A 440 IFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTS 519 (570)
T ss_dssp TTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTT
T ss_pred hhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccC
Confidence 3455666677777777665 3455566677777777777777655 5566677777777777777776654 3667777
Q ss_pred CcEEEccCCCCCCh
Q psy3049 121 IQILGLHGNPLSKD 134 (157)
Q Consensus 121 L~~l~l~~n~~~~~ 134 (157)
|+++++++|++.+.
T Consensus 520 L~~L~l~~N~~~~~ 533 (570)
T 2z63_A 520 LQKIWLHTNPWDCS 533 (570)
T ss_dssp CCEEECCSSCBCCC
T ss_pred CcEEEecCCcccCC
Confidence 77777777777765
No 101
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.61 E-value=2.6e-15 Score=100.07 Aligned_cols=117 Identities=28% Similarity=0.439 Sum_probs=102.4
Q ss_pred CCEEEecCCcceecCccccCCCCCChhhhcCcccceEecccCCCccccccccccccccEEeccCCCCCCCCh-hhhCccc
Q psy3049 19 LRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTRLSGDISLLINLRTLDISNNKLRYLPS-EIGDLIY 97 (157)
Q Consensus 19 L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~ 97 (157)
-+.+++++++++++|+.+. +.++.|++++|.++.+|..+..+++|+.|++++|.++.++. .+..+++
T Consensus 12 ~~~l~~~~~~l~~ip~~~~------------~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~ 79 (193)
T 2wfh_A 12 DTVVRCSNKGLKVLPKGIP------------RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQ 79 (193)
T ss_dssp TTEEECTTSCCSSCCSCCC------------TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred CCEEEcCCCCCCcCCCCCC------------CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCC
Confidence 3678999999999887542 46999999999999998889999999999999999998864 6889999
Q ss_pred cceEEcCCCcccCcch-hhcCcCCCcEEEccCCCCCChhHHhhcCCCChHH
Q psy3049 98 LRELCLNNNNLRTLPY-ELGKLFQIQILGLHGNPLSKDYMKIYNEPNGTQK 147 (157)
Q Consensus 98 l~~l~l~~n~l~~l~~-~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~l~~ 147 (157)
|+.|++++|.++.++. .+..+++|++|++++|.+.+..+..|..++.++.
T Consensus 80 L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 130 (193)
T 2wfh_A 80 LLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSH 130 (193)
T ss_dssp CCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCE
T ss_pred CCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccE
Confidence 9999999999998875 5889999999999999999888888877766654
No 102
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.61 E-value=3.4e-16 Score=111.29 Aligned_cols=85 Identities=22% Similarity=0.333 Sum_probs=57.0
Q ss_pred cCcccceEecccCCCcccccc----ccccccccEEeccCCCCCCC-ChhhhCc---cccceEEcCCCcccCcchhhcCcC
Q psy3049 48 QFTHLTALYMNDNNLTRLSGD----ISLLINLRTLDISNNKLRYL-PSEIGDL---IYLRELCLNNNNLRTLPYELGKLF 119 (157)
Q Consensus 48 ~~~~L~~l~l~~~~~~~~~~~----~~~~~~L~~L~l~~~~~~~~-~~~~~~~---~~l~~l~l~~n~l~~l~~~~~~~~ 119 (157)
.+++|++|++++|.++.++.. +..+++|++|++++|.++.. |..+..+ ++|++|++++|+++.+|..+. +
T Consensus 195 ~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~--~ 272 (310)
T 4glp_A 195 KFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGLP--A 272 (310)
T ss_dssp SSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCSCCC--S
T ss_pred cCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhhhhc--C
Confidence 456677777777777654432 34567777777777777655 5555444 577777777777777776553 6
Q ss_pred CCcEEEccCCCCCCh
Q psy3049 120 QIQILGLHGNPLSKD 134 (157)
Q Consensus 120 ~L~~l~l~~n~~~~~ 134 (157)
+|+++++++|.+.+.
T Consensus 273 ~L~~L~Ls~N~l~~~ 287 (310)
T 4glp_A 273 KLRVLDLSSNRLNRA 287 (310)
T ss_dssp CCSCEECCSCCCCSC
T ss_pred CCCEEECCCCcCCCC
Confidence 777777777777764
No 103
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.61 E-value=1.5e-16 Score=124.73 Aligned_cols=127 Identities=24% Similarity=0.261 Sum_probs=102.8
Q ss_pred CCCCCCCccchhhhcccCCCEEEecCCcceecCccccCCCCCChhhhcCcccceEecccCCCccccccccccccccEEec
Q psy3049 1 MNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTRLSGDISLLINLRTLDI 80 (157)
Q Consensus 1 l~~n~i~~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l 80 (157)
|++|.|..+|..+..+++|+.|++++|.++.+|+. +..+++|++|++++|.++.+|..++.+.+|++|++
T Consensus 231 Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~----------~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L 300 (727)
T 4b8c_D 231 LSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAE----------IKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYF 300 (727)
T ss_dssp CTTSCCSCCCGGGGGCCSCSCCBCTTSCCSCCCGG----------GGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEEC
T ss_pred CCCCCCCCCChhhcCCCCCCEEEeeCCcCcccChh----------hhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEEC
Confidence 57899999999888999999999999999987765 55778999999999999999989999999999999
Q ss_pred cCCCCCCCChhhhCccccceEEcCCCcccCc-chhhcCcC-CCcEEEccCCCCCChhHH
Q psy3049 81 SNNKLRYLPSEIGDLIYLRELCLNNNNLRTL-PYELGKLF-QIQILGLHGNPLSKDYMK 137 (157)
Q Consensus 81 ~~~~~~~~~~~~~~~~~l~~l~l~~n~l~~l-~~~~~~~~-~L~~l~l~~n~~~~~~~~ 137 (157)
++|.++.+|..+..+++|+.|++++|.++.. |..+.... ....+++++|.+.+.+|.
T Consensus 301 ~~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~ 359 (727)
T 4b8c_D 301 FDNMVTTLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH 359 (727)
T ss_dssp CSSCCCCCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_pred CCCCCCccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCcc
Confidence 9999999998899999999999999999954 44443321 111234444444444433
No 104
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.61 E-value=2.9e-15 Score=111.29 Aligned_cols=132 Identities=20% Similarity=0.284 Sum_probs=98.9
Q ss_pred CCCCCCCccc-hhhhcccCCCEEEecCCcce-ecCccccCCCCCChhhhcCcccceEecccCCCccc-cccccccccccE
Q psy3049 1 MNDNNLTRLS-GDISLLINLRTLDISNNKLR-YLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTRL-SGDISLLINLRT 77 (157)
Q Consensus 1 l~~n~i~~l~-~~~~~l~~L~~L~l~~~~l~-~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~-~~~~~~~~~L~~ 77 (157)
+++|.|+.++ ..+..+++|+.|++++|.+. .+++. .+..+++|++|++++|.++.+ +..+..+++|++
T Consensus 37 Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~---------~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 107 (455)
T 3v47_A 37 LSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNN---------TFRGLSSLIILKLDYNQFLQLETGAFNGLANLEV 107 (455)
T ss_dssp CCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTT---------TTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCE
T ss_pred ecCCccCcCChhHhccCccccEEECcCCcccceECcc---------cccccccCCEEeCCCCccCccChhhccCcccCCE
Confidence 4566666653 34666677777777766664 34332 356778899999999998866 567888899999
Q ss_pred EeccCCCCCC-CChh--hhCccccceEEcCCCcccCc-chh-hcCcCCCcEEEccCCCCCChhHHhhcC
Q psy3049 78 LDISNNKLRY-LPSE--IGDLIYLRELCLNNNNLRTL-PYE-LGKLFQIQILGLHGNPLSKDYMKIYNE 141 (157)
Q Consensus 78 L~l~~~~~~~-~~~~--~~~~~~l~~l~l~~n~l~~l-~~~-~~~~~~L~~l~l~~n~~~~~~~~~~~~ 141 (157)
|++++|.++. .+.. +..+++|++|++++|.++.+ |.. +.++++|+++++++|.+.+..+..+..
T Consensus 108 L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~ 176 (455)
T 3v47_A 108 LTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLN 176 (455)
T ss_dssp EECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGG
T ss_pred EeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhc
Confidence 9999998875 3333 77888999999999999876 444 788999999999999988877766654
No 105
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.60 E-value=2.7e-15 Score=115.10 Aligned_cols=145 Identities=22% Similarity=0.278 Sum_probs=89.8
Q ss_pred CCCCCCCccchh-hhcccCCCEEEecCCcceecCccccCCCCC--------------ChhhhcCcccceEecccCCCc-c
Q psy3049 1 MNDNNLTRLSGD-ISLLINLRTLDISNNKLRYLPSEIGAVKNL--------------SPDLWQFTHLTALYMNDNNLT-R 64 (157)
Q Consensus 1 l~~n~i~~l~~~-~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~--------------~~~~~~~~~L~~l~l~~~~~~-~ 64 (157)
+++|.++.+++. +..+++|+.|++++|.++++|+.+..++.+ |..+..+++|+++++++|.+. .
T Consensus 261 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~ 340 (606)
T 3t6q_A 261 LQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLE 340 (606)
T ss_dssp CTTCCCSSCCTTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCB
T ss_pred eecCccCccCHHHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccc
Confidence 467788888766 888999999999999998888765433221 223445566666666666554 3
Q ss_pred ccc-cccccccccEEeccCCCCCCC---ChhhhCccccceEEcCCCcccCc-chhhcCcCCCcEEEccCCCCCChhHH-h
Q psy3049 65 LSG-DISLLINLRTLDISNNKLRYL---PSEIGDLIYLRELCLNNNNLRTL-PYELGKLFQIQILGLHGNPLSKDYMK-I 138 (157)
Q Consensus 65 ~~~-~~~~~~~L~~L~l~~~~~~~~---~~~~~~~~~l~~l~l~~n~l~~l-~~~~~~~~~L~~l~l~~n~~~~~~~~-~ 138 (157)
++. .+..+++|+.|++++|.++.. +..+..+++|+.+++++|.+..+ |..+..+++|+++++++|.+.+..+. .
T Consensus 341 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 420 (606)
T 3t6q_A 341 LGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSP 420 (606)
T ss_dssp CCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCT
T ss_pred cchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchh
Confidence 332 255566666666666666543 44556666666666666666644 34466666666666666666554433 2
Q ss_pred hcCCCCh
Q psy3049 139 YNEPNGT 145 (157)
Q Consensus 139 ~~~~~~l 145 (157)
+..++.+
T Consensus 421 ~~~l~~L 427 (606)
T 3t6q_A 421 FQNLHLL 427 (606)
T ss_dssp TTTCTTC
T ss_pred hhCcccC
Confidence 4444443
No 106
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.59 E-value=6e-15 Score=112.78 Aligned_cols=114 Identities=26% Similarity=0.278 Sum_probs=78.2
Q ss_pred CCCCCCCccchhhhcccCCCEEEecCCcceecCccccCCCCCChhhhcCcccceEecccCCCccccccccccccccEEec
Q psy3049 1 MNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTRLSGDISLLINLRTLDI 80 (157)
Q Consensus 1 l~~n~i~~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l 80 (157)
+++|.|+.+|. ++.+++|+.|++++|.++.+|+. +..+++|+.|++++|.++.+| .++.+++|+.|++
T Consensus 448 Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~----------~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~L 515 (567)
T 1dce_A 448 LAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPA----------LAALRCLEVLQASDNALENVD-GVANLPRLQELLL 515 (567)
T ss_dssp CTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCGG----------GGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEEC
T ss_pred ecCCCCCCCcC-ccccccCcEeecCcccccccchh----------hhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEEC
Confidence 46677777765 77777777777777777766543 445667777777777777765 6667777777777
Q ss_pred cCCCCCCC--ChhhhCccccceEEcCCCcccCcchh----hcCcCCCcEEEc
Q psy3049 81 SNNKLRYL--PSEIGDLIYLRELCLNNNNLRTLPYE----LGKLFQIQILGL 126 (157)
Q Consensus 81 ~~~~~~~~--~~~~~~~~~l~~l~l~~n~l~~l~~~----~~~~~~L~~l~l 126 (157)
++|.++.+ |..+..+++|+.|++++|.++.+|.. +..+++|+.|++
T Consensus 516 s~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 516 CNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp CSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred CCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 77777766 66777777777777777777755443 234667776653
No 107
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.59 E-value=3.1e-15 Score=106.48 Aligned_cols=131 Identities=24% Similarity=0.277 Sum_probs=102.2
Q ss_pred CCCCCCCccc-hhhhcccCCCEEEecCCccee---cCccc--c---CCCC-------C------Chh-hhcCcccceEec
Q psy3049 1 MNDNNLTRLS-GDISLLINLRTLDISNNKLRY---LPSEI--G---AVKN-------L------SPD-LWQFTHLTALYM 57 (157)
Q Consensus 1 l~~n~i~~l~-~~~~~l~~L~~L~l~~~~l~~---~~~~~--~---~~~~-------~------~~~-~~~~~~L~~l~l 57 (157)
+++|.|+.++ ..++.+++|+.|++++|++.. +++.+ + .++. + +.. +..+++|++|++
T Consensus 156 L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~L 235 (312)
T 1wwl_A 156 IAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDL 235 (312)
T ss_dssp EESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEEC
T ss_pred eeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEEC
Confidence 3678888877 458889999999999988643 22222 2 2211 1 112 235689999999
Q ss_pred ccCCCcccc--ccccccccccEEeccCCCCCCCChhhhCccccceEEcCCCcccCcchhhcCcCCCcEEEccCCCCCCh
Q psy3049 58 NDNNLTRLS--GDISLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLRTLPYELGKLFQIQILGLHGNPLSKD 134 (157)
Q Consensus 58 ~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~l~~n~l~~l~~~~~~~~~L~~l~l~~n~~~~~ 134 (157)
++|.++..+ ..+..+++|+.|++++|.++.+|..+. ++|+.|++++|+++.+|. +..+++|+++++++|++++.
T Consensus 236 s~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~--~~L~~L~Ls~N~l~~~p~-~~~l~~L~~L~L~~N~l~~~ 311 (312)
T 1wwl_A 236 SHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLP--AKLSVLDLSYNRLDRNPS-PDELPQVGNLSLKGNPFLDS 311 (312)
T ss_dssp TTSCCCSSCCCSCCCCCTTCCEEECTTSCCSSCCSSCC--SEEEEEECCSSCCCSCCC-TTTSCEEEEEECTTCTTTCC
T ss_pred CCCcCCcccchhhhhhcCCCCEEECCCCccChhhhhcc--CCceEEECCCCCCCCChh-HhhCCCCCEEeccCCCCCCC
Confidence 999998754 345668899999999999999988765 899999999999999877 88999999999999999864
No 108
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.58 E-value=2.1e-14 Score=110.72 Aligned_cols=115 Identities=31% Similarity=0.381 Sum_probs=89.5
Q ss_pred cCCCEEEecCCcceecCccccCCCC----------CChhhhcCcccceEecccCCCccccccccccccccEEeccCCCCC
Q psy3049 17 INLRTLDISNNKLRYLPSEIGAVKN----------LSPDLWQFTHLTALYMNDNNLTRLSGDISLLINLRTLDISNNKLR 86 (157)
Q Consensus 17 ~~L~~L~l~~~~l~~~~~~~~~~~~----------~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 86 (157)
++|+.|++++|.++.+|.....+.. +|. .+++|+.|++++|.++.+| ..+++|+.|++++|.++
T Consensus 181 ~~L~~L~Ls~N~l~~l~~~~~~L~~L~L~~N~l~~l~~---~~~~L~~L~Ls~N~L~~lp---~~l~~L~~L~Ls~N~L~ 254 (622)
T 3g06_A 181 SGLQELSVSDNQLASLPTLPSELYKLWAYNNRLTSLPA---LPSGLKELIVSGNRLTSLP---VLPSELKELMVSGNRLT 254 (622)
T ss_dssp TTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSSCCC---CCTTCCEEECCSSCCSCCC---CCCTTCCEEECCSSCCS
T ss_pred CCCcEEECCCCCCCCCCCccchhhEEECcCCcccccCC---CCCCCCEEEccCCccCcCC---CCCCcCcEEECCCCCCC
Confidence 5666777777777666554333221 121 1356888888888888776 34578999999999998
Q ss_pred CCChhhhCccccceEEcCCCcccCcchhhcCcCCCcEEEccCCCCCChhHHhhc
Q psy3049 87 YLPSEIGDLIYLRELCLNNNNLRTLPYELGKLFQIQILGLHGNPLSKDYMKIYN 140 (157)
Q Consensus 87 ~~~~~~~~~~~l~~l~l~~n~l~~l~~~~~~~~~L~~l~l~~n~~~~~~~~~~~ 140 (157)
.+|. .+++|+.|++++|.++.+|..+.++++|+.+++++|++.+..+..+.
T Consensus 255 ~lp~---~~~~L~~L~Ls~N~L~~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~ 305 (622)
T 3g06_A 255 SLPM---LPSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPLSERTLQALR 305 (622)
T ss_dssp CCCC---CCTTCCEEECCSSCCCSCCGGGGGSCTTCEEECCSCCCCHHHHHHHH
T ss_pred cCCc---ccccCcEEeCCCCCCCcCCHHHhhccccCEEEecCCCCCCcCHHHHH
Confidence 8877 56889999999999999999899999999999999999998888764
No 109
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.58 E-value=1.6e-15 Score=108.15 Aligned_cols=120 Identities=17% Similarity=0.167 Sum_probs=90.3
Q ss_pred ccCCCEEEecCCcceecCccccCCCCCChhhhcCcccceEecccCCCcccc-ccc-cccccccEEeccCCCCCCCChhhh
Q psy3049 16 LINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTRLS-GDI-SLLINLRTLDISNNKLRYLPSEIG 93 (157)
Q Consensus 16 l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~-~~~-~~~~~L~~L~l~~~~~~~~~~~~~ 93 (157)
+++|+.|++++|+++.+++. .+..+++|++|++++|.++.++ ..+ ..+++|++|++++|.++.++...
T Consensus 119 ~~~L~~L~l~~N~l~~~~~~---------~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~- 188 (317)
T 3o53_A 119 GQGKKNIYLANNKITMLRDL---------DEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQV- 188 (317)
T ss_dssp CSSCEEEECCSSCCCSGGGB---------CTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECCC-
T ss_pred cCCCCEEECCCCCCCCccch---------hhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccccccc-
Confidence 44555555555555544332 3556788999999999998754 334 46789999999999998775433
Q ss_pred CccccceEEcCCCcccCcchhhcCcCCCcEEEccCCCCCChhHHhhcCCCChH
Q psy3049 94 DLIYLRELCLNNNNLRTLPYELGKLFQIQILGLHGNPLSKDYMKIYNEPNGTQ 146 (157)
Q Consensus 94 ~~~~l~~l~l~~n~l~~l~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~l~ 146 (157)
.+++|+.|++++|+++.+|..+..+++|+++++++|.+.+ ++..+..++.++
T Consensus 189 ~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l~~-l~~~~~~l~~L~ 240 (317)
T 3o53_A 189 VFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLE 240 (317)
T ss_dssp CCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCC
T ss_pred ccccCCEEECCCCcCCcchhhhcccCcccEEECcCCcccc-hhhHhhcCCCCC
Confidence 4789999999999999998889999999999999999985 455566555544
No 110
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.58 E-value=1.8e-14 Score=107.60 Aligned_cols=137 Identities=30% Similarity=0.413 Sum_probs=86.8
Q ss_pred CCCCCCCccchhhhcccCCCEEEecCCcceecCccccCCC-------------CCChhhhcCcccceEecccCCCccccc
Q psy3049 1 MNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVK-------------NLSPDLWQFTHLTALYMNDNNLTRLSG 67 (157)
Q Consensus 1 l~~n~i~~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~-------------~~~~~~~~~~~L~~l~l~~~~~~~~~~ 67 (157)
+++|.++.++ .+..+++|+.|++++|.++.+++ +..+. .++. +..+++|+.|++++|.++.+++
T Consensus 228 l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~ 304 (466)
T 1o6v_A 228 LNGNQLKDIG-TLASLTNLTDLDLANNQISNLAP-LSGLTKLTELKLGANQISNISP-LAGLTALTNLELNENQLEDISP 304 (466)
T ss_dssp CCSSCCCCCG-GGGGCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCSCCGG
T ss_pred CCCCCcccch-hhhcCCCCCEEECCCCccccchh-hhcCCCCCEEECCCCccCcccc-ccCCCccCeEEcCCCcccCchh
Confidence 3566666653 46667777777777777665543 22111 1121 4556677777777777766544
Q ss_pred cccccccccEEeccCCCCCCCChhhhCccccceEEcCCCcccCcchhhcCcCCCcEEEccCCCCCChhHHhhcCCCCh
Q psy3049 68 DISLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLRTLPYELGKLFQIQILGLHGNPLSKDYMKIYNEPNGT 145 (157)
Q Consensus 68 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~l~~n~l~~l~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~l 145 (157)
+..+++|+.|++++|.++..+. +..+++|+.+++++|.++.++ .+.++++|+++++++|.+.+..| +..++.+
T Consensus 305 -~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L 377 (466)
T 1o6v_A 305 -ISNLKNLTYLTLYFNNISDISP-VSSLTKLQRLFFYNNKVSDVS-SLANLTNINWLSAGHNQISDLTP--LANLTRI 377 (466)
T ss_dssp -GGGCTTCSEEECCSSCCSCCGG-GGGCTTCCEEECCSSCCCCCG-GGTTCTTCCEEECCSSCCCBCGG--GTTCTTC
T ss_pred -hcCCCCCCEEECcCCcCCCchh-hccCccCCEeECCCCccCCch-hhccCCCCCEEeCCCCccCccch--hhcCCCC
Confidence 5667777777777777765544 556677777777777777663 46677777777777777776665 4444444
No 111
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.57 E-value=2.5e-14 Score=106.88 Aligned_cols=128 Identities=27% Similarity=0.393 Sum_probs=60.5
Q ss_pred CCCCCCccchhhhcccCCCEEEecCCcceecCccccCCCCC------------ChhhhcCcccceEecccCCCccccccc
Q psy3049 2 NDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNL------------SPDLWQFTHLTALYMNDNNLTRLSGDI 69 (157)
Q Consensus 2 ~~n~i~~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~------------~~~~~~~~~L~~l~l~~~~~~~~~~~~ 69 (157)
++|.++.++ .+..+++|+.|++++|.+..+++ ++.+..+ .+.+..+++|+.+++++|.++..++ +
T Consensus 185 ~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~-~ 261 (466)
T 1o6v_A 185 SSNKVSDIS-VLAKLTNLESLIATNNQISDITP-LGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP-L 261 (466)
T ss_dssp CSSCCCCCG-GGGGCTTCSEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGG-G
T ss_pred cCCcCCCCh-hhccCCCCCEEEecCCccccccc-ccccCCCCEEECCCCCcccchhhhcCCCCCEEECCCCccccchh-h
Confidence 455555553 25556666666666665554432 1111000 0123444555555555555554433 4
Q ss_pred cccccccEEeccCCCCCCCChhhhCccccceEEcCCCcccCcchhhcCcCCCcEEEccCCCCCCh
Q psy3049 70 SLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLRTLPYELGKLFQIQILGLHGNPLSKD 134 (157)
Q Consensus 70 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~l~~n~l~~l~~~~~~~~~L~~l~l~~n~~~~~ 134 (157)
..+++|+.|++++|.++.++. +..+++|+.|++++|+++.++. +..+++|+++++++|.+.+.
T Consensus 262 ~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~ 324 (466)
T 1o6v_A 262 SGLTKLTELKLGANQISNISP-LAGLTALTNLELNENQLEDISP-ISNLKNLTYLTLYFNNISDI 324 (466)
T ss_dssp TTCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCSCCGG-GGGCTTCSEEECCSSCCSCC
T ss_pred hcCCCCCEEECCCCccCcccc-ccCCCccCeEEcCCCcccCchh-hcCCCCCCEEECcCCcCCCc
Confidence 445555555555555544433 4444455555555555444433 34444444444444444443
No 112
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.56 E-value=1.5e-14 Score=110.58 Aligned_cols=129 Identities=26% Similarity=0.318 Sum_probs=75.6
Q ss_pred CCCCCCCccchhhhcccCCCEEEecCCcceecCcccc-----------CCCCCChhhhcCcccceEecccCCCccccccc
Q psy3049 1 MNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIG-----------AVKNLSPDLWQFTHLTALYMNDNNLTRLSGDI 69 (157)
Q Consensus 1 l~~n~i~~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~-----------~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~ 69 (157)
+++|.|+.+| ..+++|+.|++++|.++.+|. +. .+..+|. .+++|++|++++|.++.+|.
T Consensus 87 Ls~N~l~~ip---~~l~~L~~L~Ls~N~l~~ip~-l~~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~l~~lp~-- 157 (571)
T 3cvr_A 87 ITQNALISLP---ELPASLEYLDACDNRLSTLPE-LPASLKHLDVDNNQLTMLPE---LPALLEYINADNNQLTMLPE-- 157 (571)
T ss_dssp CCSSCCSCCC---CCCTTCCEEECCSSCCSCCCC-CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSCCCC--
T ss_pred CcCCCCcccc---cccCCCCEEEccCCCCCCcch-hhcCCCEEECCCCcCCCCCC---cCccccEEeCCCCccCcCCC--
Confidence 3455555555 335566666666666666555 32 1122333 34556666666666665554
Q ss_pred cccccccEEeccCCCCCCCChhhhCccccceEEcCCCcccCcchhhcCcCCC-------cEEEccCCCCCChhHHhhcCC
Q psy3049 70 SLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLRTLPYELGKLFQI-------QILGLHGNPLSKDYMKIYNEP 142 (157)
Q Consensus 70 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~l~~n~l~~l~~~~~~~~~L-------~~l~l~~n~~~~~~~~~~~~~ 142 (157)
.+++|+.|++++|.++.+|. +. ++|+.|++++|.++.+|. +.. +| +.+++++|.++.. |..+..+
T Consensus 158 -~l~~L~~L~Ls~N~L~~lp~-l~--~~L~~L~Ls~N~L~~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~~l-p~~l~~l 229 (571)
T 3cvr_A 158 -LPTSLEVLSVRNNQLTFLPE-LP--ESLEALDVSTNLLESLPA-VPV--RNHHSEETEIFFRCRENRITHI-PENILSL 229 (571)
T ss_dssp -CCTTCCEEECCSSCCSCCCC-CC--TTCCEEECCSSCCSSCCC-CC----------CCEEEECCSSCCCCC-CGGGGGS
T ss_pred -cCCCcCEEECCCCCCCCcch-hh--CCCCEEECcCCCCCchhh-HHH--hhhcccccceEEecCCCcceec-CHHHhcC
Confidence 35567777777777776666 43 677777777777777776 443 56 7788888877754 4434335
Q ss_pred CChH
Q psy3049 143 NGTQ 146 (157)
Q Consensus 143 ~~l~ 146 (157)
+.++
T Consensus 230 ~~L~ 233 (571)
T 3cvr_A 230 DPTC 233 (571)
T ss_dssp CTTE
T ss_pred CCCC
Confidence 4443
No 113
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.56 E-value=4.9e-15 Score=117.84 Aligned_cols=97 Identities=19% Similarity=0.209 Sum_probs=76.9
Q ss_pred hhhhcCcccceEecccCCCccc-cccccccccccEEeccCCCCCC-CChh--hhCccccceEEcCCCcccCcc--hhhcC
Q psy3049 44 PDLWQFTHLTALYMNDNNLTRL-SGDISLLINLRTLDISNNKLRY-LPSE--IGDLIYLRELCLNNNNLRTLP--YELGK 117 (157)
Q Consensus 44 ~~~~~~~~L~~l~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~-~~~~--~~~~~~l~~l~l~~n~l~~l~--~~~~~ 117 (157)
..+..+++|++|++++|.++.+ |..+..+++|++|++++|.++. .+.. +..+++|++|++++|.++.++ ..+++
T Consensus 67 ~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~ 146 (844)
T 3j0a_A 67 EAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGK 146 (844)
T ss_dssp TTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGT
T ss_pred HHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhh
Confidence 3467788899999999988866 5678888899999999988874 4443 778889999999999888653 45888
Q ss_pred cCCCcEEEccCCCCCChhHHhhc
Q psy3049 118 LFQIQILGLHGNPLSKDYMKIYN 140 (157)
Q Consensus 118 ~~~L~~l~l~~n~~~~~~~~~~~ 140 (157)
+++|++|++++|.+.+..++.+.
T Consensus 147 L~~L~~L~Ls~N~i~~~~~~~l~ 169 (844)
T 3j0a_A 147 LNSLKSIDFSSNQIFLVCEHELE 169 (844)
T ss_dssp CSSCCEEEEESSCCCCCCSGGGH
T ss_pred CCCCCEEECCCCcCCeeCHHHcc
Confidence 89999999999888876666554
No 114
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.55 E-value=2.5e-14 Score=106.83 Aligned_cols=94 Identities=29% Similarity=0.349 Sum_probs=51.0
Q ss_pred CCCCCCCccchhhhcccCCCEEEecCCcceecCccccCCCCCChhhhcCcccceEecccCCCccccccccccccccEEec
Q psy3049 1 MNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTRLSGDISLLINLRTLDI 80 (157)
Q Consensus 1 l~~n~i~~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l 80 (157)
+++|.|+.+| ++..+++|+.|++++|.++.++ + ..+++|++|++++|.++.++ ++.+++|++|++
T Consensus 49 Ls~n~l~~~~-~l~~l~~L~~L~Ls~n~l~~~~--~----------~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~L~L 113 (457)
T 3bz5_A 49 CHNSSITDMT-GIEKLTGLTKLICTSNNITTLD--L----------SQNTNLTYLACDSNKLTNLD--VTPLTKLTYLNC 113 (457)
T ss_dssp CCSSCCCCCT-TGGGCTTCSEEECCSSCCSCCC--C----------TTCTTCSEEECCSSCCSCCC--CTTCTTCCEEEC
T ss_pred ccCCCcccCh-hhcccCCCCEEEccCCcCCeEc--c----------ccCCCCCEEECcCCCCceee--cCCCCcCCEEEC
Confidence 4566777665 5677777777777777776653 2 23344555555555554432 344445555555
Q ss_pred cCCCCCCCChhhhCccccceEEcCCCcccCc
Q psy3049 81 SNNKLRYLPSEIGDLIYLRELCLNNNNLRTL 111 (157)
Q Consensus 81 ~~~~~~~~~~~~~~~~~l~~l~l~~n~l~~l 111 (157)
++|.++.++ +..+++|+++++++|.++.+
T Consensus 114 ~~N~l~~l~--~~~l~~L~~L~l~~N~l~~l 142 (457)
T 3bz5_A 114 DTNKLTKLD--VSQNPLLTYLNCARNTLTEI 142 (457)
T ss_dssp CSSCCSCCC--CTTCTTCCEEECTTSCCSCC
T ss_pred CCCcCCeec--CCCCCcCCEEECCCCcccee
Confidence 555544443 34444455555555544443
No 115
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.54 E-value=5e-14 Score=92.37 Aligned_cols=102 Identities=25% Similarity=0.361 Sum_probs=87.9
Q ss_pred CCCCCCCccchhhhcccCCCEEEecCCcceecCccccCCCCCChhhhcCcccceEecccCCCcccccc-ccccccccEEe
Q psy3049 1 MNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTRLSGD-ISLLINLRTLD 79 (157)
Q Consensus 1 l~~n~i~~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~-~~~~~~L~~L~ 79 (157)
+++|.++.+|..+. ++++.|++++|+++.+++. .+..+++|++|++++|.++.+++. +..+++|+.|+
T Consensus 19 ~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~---------~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~ 87 (174)
T 2r9u_A 19 CQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPG---------VFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLD 87 (174)
T ss_dssp CCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTT---------TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred eCCCCCCccCCCcC--CCCcEEEeCCCCccccCHH---------HhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEE
Confidence 46889999998764 8999999999999987653 256788999999999999998765 57899999999
Q ss_pred ccCCCCCCCChh-hhCccccceEEcCCCcccCcch
Q psy3049 80 ISNNKLRYLPSE-IGDLIYLRELCLNNNNLRTLPY 113 (157)
Q Consensus 80 l~~~~~~~~~~~-~~~~~~l~~l~l~~n~l~~l~~ 113 (157)
+++|.++.+|.. +..+++|+++++++|.+.-.+.
T Consensus 88 L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~ 122 (174)
T 2r9u_A 88 LNDNHLKSIPRGAFDNLKSLTHIYLYNNPWDCECR 122 (174)
T ss_dssp CCSSCCCCCCTTTTTTCTTCSEEECCSSCBCTTBG
T ss_pred CCCCccceeCHHHhccccCCCEEEeCCCCcccccc
Confidence 999999988774 8889999999999999985543
No 116
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.53 E-value=9.6e-15 Score=103.79 Aligned_cols=131 Identities=24% Similarity=0.263 Sum_probs=102.9
Q ss_pred CCCCCCCccch-hhhcccCCCEEEecCCccee---cCc-----cccCCCCC----------Chh----hhcCcccceEec
Q psy3049 1 MNDNNLTRLSG-DISLLINLRTLDISNNKLRY---LPS-----EIGAVKNL----------SPD----LWQFTHLTALYM 57 (157)
Q Consensus 1 l~~n~i~~l~~-~~~~l~~L~~L~l~~~~l~~---~~~-----~~~~~~~~----------~~~----~~~~~~L~~l~l 57 (157)
+++|.|+.+++ .+..+++|+.|++++|++.. ++. .+..++.+ +.. +..+++|++|++
T Consensus 152 Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~L 231 (310)
T 4glp_A 152 IAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDL 231 (310)
T ss_dssp EECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEEC
T ss_pred eeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEEC
Confidence 46788988775 48899999999999998753 221 12222221 221 356789999999
Q ss_pred ccCCCccc-ccccccc---ccccEEeccCCCCCCCChhhhCccccceEEcCCCcccCcchhhcCcCCCcEEEccCCCCCC
Q psy3049 58 NDNNLTRL-SGDISLL---INLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLRTLPYELGKLFQIQILGLHGNPLSK 133 (157)
Q Consensus 58 ~~~~~~~~-~~~~~~~---~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~l~~n~l~~l~~~~~~~~~L~~l~l~~n~~~~ 133 (157)
++|.++.. |..+..+ ++|++|++++|.++.+|..+. ++|+.|++++|+++.+|. +..+++|+.+++++|++++
T Consensus 232 s~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~--~~L~~L~Ls~N~l~~~~~-~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 232 SHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGLP--AKLRVLDLSSNRLNRAPQ-PDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp TTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCSCCC--SCCSCEECCSCCCCSCCC-TTSCCCCSCEECSSTTTSC
T ss_pred CCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhhhhc--CCCCEEECCCCcCCCCch-hhhCCCccEEECcCCCCCC
Confidence 99999976 6666655 699999999999998888664 799999999999998866 6788999999999999875
Q ss_pred h
Q psy3049 134 D 134 (157)
Q Consensus 134 ~ 134 (157)
.
T Consensus 309 ~ 309 (310)
T 4glp_A 309 P 309 (310)
T ss_dssp C
T ss_pred C
Confidence 3
No 117
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.53 E-value=1e-13 Score=103.56 Aligned_cols=88 Identities=25% Similarity=0.240 Sum_probs=61.8
Q ss_pred hhcCcccceEecccCCCccccccccccccccEEeccCCCCCCCChhhhCccccceEEcCCCcccCcchhhcCcCCCcEEE
Q psy3049 46 LWQFTHLTALYMNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLRTLPYELGKLFQIQILG 125 (157)
Q Consensus 46 ~~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~l~~n~l~~l~~~~~~~~~L~~l~ 125 (157)
+..+++|+.+++++|.++.++ +..+++|+.|++++|.++.++ +..+++|+.+++++|+++.+| +..+++|++++
T Consensus 166 ~~~l~~L~~L~ls~n~l~~l~--l~~l~~L~~L~l~~N~l~~~~--l~~l~~L~~L~Ls~N~l~~ip--~~~l~~L~~L~ 239 (457)
T 3bz5_A 166 VTPQTQLTTLDCSFNKITELD--VSQNKLLNRLNCDTNNITKLD--LNQNIQLTFLDCSSNKLTEID--VTPLTQLTYFD 239 (457)
T ss_dssp CTTCTTCCEEECCSSCCCCCC--CTTCTTCCEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC--CTTCTTCSEEE
T ss_pred cccCCcCCEEECCCCccceec--cccCCCCCEEECcCCcCCeec--cccCCCCCEEECcCCcccccC--ccccCCCCEEE
Confidence 344566667777777666654 556667777777777776653 566777888888888888776 67778888888
Q ss_pred ccCCCCCChhHHhh
Q psy3049 126 LHGNPLSKDYMKIY 139 (157)
Q Consensus 126 l~~n~~~~~~~~~~ 139 (157)
+++|.+.+..+..+
T Consensus 240 l~~N~l~~~~~~~l 253 (457)
T 3bz5_A 240 CSVNPLTELDVSTL 253 (457)
T ss_dssp CCSSCCSCCCCTTC
T ss_pred eeCCcCCCcCHHHC
Confidence 88888877654444
No 118
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.52 E-value=2.6e-14 Score=113.71 Aligned_cols=135 Identities=23% Similarity=0.285 Sum_probs=112.2
Q ss_pred CCCCCCccchhhhcccCCCEEEecCCcceecCccccCCCCCChhhhcCcccceEecccCCC-ccc-cccccccccccEEe
Q psy3049 2 NDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNL-TRL-SGDISLLINLRTLD 79 (157)
Q Consensus 2 ~~n~i~~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~-~~~-~~~~~~~~~L~~L~ 79 (157)
+++.++.+|. ..++++.|++++|.++.+++. .+..+++|++|++++|.. ..+ +..+..+++|++|+
T Consensus 12 s~~~L~~vP~---lp~~l~~LdLs~N~i~~i~~~---------~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~ 79 (844)
T 3j0a_A 12 RFCNLTQVPQ---VLNTTERLLLSFNYIRTVTAS---------SFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILD 79 (844)
T ss_dssp SCCCSSCCCS---SCTTCCEEEEESCCCCEECSS---------SCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEE
T ss_pred cCCCCCCCCC---CCCCcCEEECCCCcCCccChh---------HCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEE
Confidence 4678889987 457899999999999987543 256788999999999954 455 56789999999999
Q ss_pred ccCCCCCCC-ChhhhCccccceEEcCCCcccC-cchh--hcCcCCCcEEEccCCCCCChhH-HhhcCCCChHHH
Q psy3049 80 ISNNKLRYL-PSEIGDLIYLRELCLNNNNLRT-LPYE--LGKLFQIQILGLHGNPLSKDYM-KIYNEPNGTQKL 148 (157)
Q Consensus 80 l~~~~~~~~-~~~~~~~~~l~~l~l~~n~l~~-l~~~--~~~~~~L~~l~l~~n~~~~~~~-~~~~~~~~l~~l 148 (157)
+++|.++.+ |..+..+++|++|++++|.++. ++.. +.++++|++|++++|.+.+..+ ..++.++.++.+
T Consensus 80 Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L 153 (844)
T 3j0a_A 80 LGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSI 153 (844)
T ss_dssp CTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEE
T ss_pred CCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEE
Confidence 999999876 7789999999999999999985 5554 8999999999999999987754 567777776543
No 119
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.52 E-value=5.2e-14 Score=92.30 Aligned_cols=117 Identities=27% Similarity=0.360 Sum_probs=99.0
Q ss_pred CCCEEEecCCcceecCccccCCCCCChhhhcCcccceEecccCCCccccc-cccccccccEEeccCCCCCCCCh-hhhCc
Q psy3049 18 NLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTRLSG-DISLLINLRTLDISNNKLRYLPS-EIGDL 95 (157)
Q Consensus 18 ~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~-~~~~~ 95 (157)
..+.+++++++++.+|..+ .++++.+++++|.++.+++ .+..+++|++|++++|.++.++. .+..+
T Consensus 8 ~~~~l~~~~~~l~~~p~~~------------~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l 75 (177)
T 2o6r_A 8 SGTEIRCNSKGLTSVPTGI------------PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKL 75 (177)
T ss_dssp ETTEEECCSSCCSSCCTTC------------CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTC
T ss_pred CCCEEEecCCCCccCCCCC------------CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCC
Confidence 3578899999998887643 2479999999999998765 46789999999999999998875 46889
Q ss_pred cccceEEcCCCcccCcchh-hcCcCCCcEEEccCCCCCChhHHhhcCCCChH
Q psy3049 96 IYLRELCLNNNNLRTLPYE-LGKLFQIQILGLHGNPLSKDYMKIYNEPNGTQ 146 (157)
Q Consensus 96 ~~l~~l~l~~n~l~~l~~~-~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~l~ 146 (157)
++|+.|++++|.++.++.. +..+++|+++++++|.+.+..+..+..++.++
T Consensus 76 ~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~ 127 (177)
T 2o6r_A 76 TKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQ 127 (177)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCC
T ss_pred CccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccC
Confidence 9999999999999988765 78999999999999999988877777666554
No 120
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.51 E-value=1.5e-13 Score=102.57 Aligned_cols=124 Identities=29% Similarity=0.474 Sum_probs=66.5
Q ss_pred CCCCCCCccchhhhcccCCCEEEecCCcceecCccccCCC----------CCChhhhcCcccceEecccCCCcccccccc
Q psy3049 1 MNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVK----------NLSPDLWQFTHLTALYMNDNNLTRLSGDIS 70 (157)
Q Consensus 1 l~~n~i~~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~----------~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~ 70 (157)
+++|.++.+| +++.+++|+.|++++|.++.+|+....++ .+| .+..+++|+++++++|.++.+|...
T Consensus 138 L~~n~l~~lp-~~~~l~~L~~L~l~~N~l~~lp~~~~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~N~l~~l~~~~- 214 (454)
T 1jl5_A 138 VSNNQLEKLP-ELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEELP-ELQNLPFLTAIYADNNSLKKLPDLP- 214 (454)
T ss_dssp CCSSCCSSCC-CCTTCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSSCCCCC-
T ss_pred CcCCCCCCCc-ccCCCCCCCEEECCCCcCcccCCCcccccEEECcCCcCCcCc-cccCCCCCCEEECCCCcCCcCCCCc-
Confidence 4567777776 57777778888888877777665432221 122 3444455555555555554443221
Q ss_pred ccccccEEeccCCCCCCCChhhhCccccceEEcCCCcccCcchhhcCcCCCcEEEccCCCCCC
Q psy3049 71 LLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLRTLPYELGKLFQIQILGLHGNPLSK 133 (157)
Q Consensus 71 ~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~l~~n~l~~l~~~~~~~~~L~~l~l~~n~~~~ 133 (157)
.+|+.|++++|.++.+|. +..+++|+++++++|+++.+|.. .++|+++++++|.+.+
T Consensus 215 --~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~l~~N~l~~l~~~---~~~L~~L~l~~N~l~~ 271 (454)
T 1jl5_A 215 --LSLESIVAGNNILEELPE-LQNLPFLTTIYADNNLLKTLPDL---PPSLEALNVRDNYLTD 271 (454)
T ss_dssp --TTCCEEECCSSCCSSCCC-CTTCTTCCEEECCSSCCSSCCSC---CTTCCEEECCSSCCSC
T ss_pred --CcccEEECcCCcCCcccc-cCCCCCCCEEECCCCcCCccccc---ccccCEEECCCCcccc
Confidence 245555555555554442 44555555555555555554432 2444555555554443
No 121
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.51 E-value=2.5e-14 Score=103.27 Aligned_cols=146 Identities=16% Similarity=0.160 Sum_probs=107.7
Q ss_pred CCCCCCCccchh-hhcccCCCEEEecCCcce-ecCcc-ccCC--------------CCC-ChhhhcCcccceEecccCCC
Q psy3049 1 MNDNNLTRLSGD-ISLLINLRTLDISNNKLR-YLPSE-IGAV--------------KNL-SPDLWQFTHLTALYMNDNNL 62 (157)
Q Consensus 1 l~~n~i~~l~~~-~~~l~~L~~L~l~~~~l~-~~~~~-~~~~--------------~~~-~~~~~~~~~L~~l~l~~~~~ 62 (157)
|++|+|+.+|+. |.++++|+.|++++|.+. .++++ +..+ ..+ |..+..+++|+++++++|.+
T Consensus 37 Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l 116 (350)
T 4ay9_X 37 FVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGI 116 (350)
T ss_dssp EESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECC
T ss_pred ccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhcccccccccccccc
Confidence 468999999865 899999999999999975 45543 2222 223 34467788999999999887
Q ss_pred cccccc-c-------------------------ccc-ccccEEeccCCCCCCCChhhhCccccceEEcCC-CcccCcchh
Q psy3049 63 TRLSGD-I-------------------------SLL-INLRTLDISNNKLRYLPSEIGDLIYLRELCLNN-NNLRTLPYE 114 (157)
Q Consensus 63 ~~~~~~-~-------------------------~~~-~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~l~~-n~l~~l~~~ 114 (157)
+.+++. + ..+ ..++.|++++|.++.++.......+++.+++.+ |.++.+|..
T Consensus 117 ~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~ 196 (350)
T 4ay9_X 117 KHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPND 196 (350)
T ss_dssp SSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEECTTCTTCCCCCTT
T ss_pred ccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhccccchhHHhhccCCcccCCCHH
Confidence 654321 0 111 246678888888888877766777888898874 788888865
Q ss_pred -hcCcCCCcEEEccCCCCCChhHHhhcCCCChH
Q psy3049 115 -LGKLFQIQILGLHGNPLSKDYMKIYNEPNGTQ 146 (157)
Q Consensus 115 -~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~l~ 146 (157)
+..+++|+++++++|.++..++..+..+..++
T Consensus 197 ~f~~l~~L~~LdLs~N~l~~lp~~~~~~L~~L~ 229 (350)
T 4ay9_X 197 VFHGASGPVILDISRTRIHSLPSYGLENLKKLR 229 (350)
T ss_dssp TTTTEECCSEEECTTSCCCCCCSSSCTTCCEEE
T ss_pred HhccCcccchhhcCCCCcCccChhhhccchHhh
Confidence 78899999999999999987776666555443
No 122
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.50 E-value=1.6e-13 Score=89.57 Aligned_cols=98 Identities=24% Similarity=0.361 Sum_probs=85.4
Q ss_pred CCCCCCCccchhhhcccCCCEEEecCCcceecCccccCCCCCChhhhcCcccceEecccCCCcccccc-ccccccccEEe
Q psy3049 1 MNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTRLSGD-ISLLINLRTLD 79 (157)
Q Consensus 1 l~~n~i~~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~-~~~~~~L~~L~ 79 (157)
+++|.++.+|..+ .++++.|++++|.++.+++. .+..+++|++|++++|.++.+++. +..+++|+.|+
T Consensus 16 ~s~n~l~~ip~~~--~~~l~~L~L~~N~i~~~~~~---------~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~ 84 (170)
T 3g39_A 16 CSGKSLASVPTGI--PTTTQVLYLYDNQITKLEPG---------VFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLS 84 (170)
T ss_dssp CTTSCCSSCCSCC--CTTCSEEECCSSCCCCCCTT---------TTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred eCCCCcCccCccC--CCCCcEEEcCCCcCCccChh---------hhcCcccCCEEECCCCCcCccChhhccCCCCCCEEE
Confidence 4789999999766 38899999999999988653 256788999999999999988764 57899999999
Q ss_pred ccCCCCCCCCh-hhhCccccceEEcCCCccc
Q psy3049 80 ISNNKLRYLPS-EIGDLIYLRELCLNNNNLR 109 (157)
Q Consensus 80 l~~~~~~~~~~-~~~~~~~l~~l~l~~n~l~ 109 (157)
+++|.++.++. .+..+++|+.+++++|.+.
T Consensus 85 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 85 LNDNQLKSIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CCCCccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence 99999998876 5888999999999999887
No 123
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.49 E-value=7.3e-15 Score=105.16 Aligned_cols=100 Identities=17% Similarity=0.185 Sum_probs=52.5
Q ss_pred hhcCcccceEecccC-CCcc--ccccccccccccEEeccCC-CCCC--CChhhhCcc-ccceEEcCCCc--cc--Ccchh
Q psy3049 46 LWQFTHLTALYMNDN-NLTR--LSGDISLLINLRTLDISNN-KLRY--LPSEIGDLI-YLRELCLNNNN--LR--TLPYE 114 (157)
Q Consensus 46 ~~~~~~L~~l~l~~~-~~~~--~~~~~~~~~~L~~L~l~~~-~~~~--~~~~~~~~~-~l~~l~l~~n~--l~--~l~~~ 114 (157)
+..+++|++|++++| .++. ++..+..+++|++|++++| .++. ++..+..++ +|+.|++++|. ++ .++..
T Consensus 138 l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~ 217 (336)
T 2ast_B 138 LAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTL 217 (336)
T ss_dssp HTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHH
T ss_pred HhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHH
Confidence 344556666666666 4442 3333455556666666666 5552 344455555 56666666653 32 34444
Q ss_pred hcCcCCCcEEEccCCC-CCChhHHhhcCCCCh
Q psy3049 115 LGKLFQIQILGLHGNP-LSKDYMKIYNEPNGT 145 (157)
Q Consensus 115 ~~~~~~L~~l~l~~n~-~~~~~~~~~~~~~~l 145 (157)
+.++++|+++++++|. +++..+..+..++.+
T Consensus 218 ~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L 249 (336)
T 2ast_B 218 VRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYL 249 (336)
T ss_dssp HHHCTTCSEEECTTCTTCCGGGGGGGGGCTTC
T ss_pred HhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCC
Confidence 5555666666666655 444444444444433
No 124
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.47 E-value=2.2e-13 Score=105.14 Aligned_cols=133 Identities=28% Similarity=0.262 Sum_probs=83.9
Q ss_pred CCCCCCccchhhhcccCCCEEEecCCcceecCccccCCCC----------CChhhhcCcccceEecccCCCcccccccc-
Q psy3049 2 NDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKN----------LSPDLWQFTHLTALYMNDNNLTRLSGDIS- 70 (157)
Q Consensus 2 ~~n~i~~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~----------~~~~~~~~~~L~~l~l~~~~~~~~~~~~~- 70 (157)
++|.|+.+|.. +++|+.|++++|.++.+|.....+.. +| ..+++|+.|++++|.++.++....
T Consensus 129 ~~N~l~~lp~~---l~~L~~L~Ls~N~l~~l~~~~~~L~~L~L~~N~l~~l~---~~~~~L~~L~Ls~N~l~~l~~~~~~ 202 (622)
T 3g06_A 129 FGNQLTSLPVL---PPGLQELSVSDNQLASLPALPSELCKLWAYNNQLTSLP---MLPSGLQELSVSDNQLASLPTLPSE 202 (622)
T ss_dssp CSSCCSCCCCC---CTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSCCC---CCCTTCCEEECCSSCCSCCCCCCTT
T ss_pred CCCCCCcCCCC---CCCCCEEECcCCcCCCcCCccCCCCEEECCCCCCCCCc---ccCCCCcEEECCCCCCCCCCCccch
Confidence 34445544432 25666666666666655543332221 12 123566777777776665443211
Q ss_pred ----------------ccccccEEeccCCCCCCCChhhhCccccceEEcCCCcccCcchhhcCcCCCcEEEccCCCCCCh
Q psy3049 71 ----------------LLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLRTLPYELGKLFQIQILGLHGNPLSKD 134 (157)
Q Consensus 71 ----------------~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~l~~n~l~~l~~~~~~~~~L~~l~l~~n~~~~~ 134 (157)
.+++|+.|++++|.++.+| ..+++|+.|++++|.++.+|. .+++|+++++++|.+. .
T Consensus 203 L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~L~~lp---~~l~~L~~L~Ls~N~L~~lp~---~~~~L~~L~Ls~N~L~-~ 275 (622)
T 3g06_A 203 LYKLWAYNNRLTSLPALPSGLKELIVSGNRLTSLP---VLPSELKELMVSGNRLTSLPM---LPSGLLSLSVYRNQLT-R 275 (622)
T ss_dssp CCEEECCSSCCSSCCCCCTTCCEEECCSSCCSCCC---CCCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCC-S
T ss_pred hhEEECcCCcccccCCCCCCCCEEEccCCccCcCC---CCCCcCcEEECCCCCCCcCCc---ccccCcEEeCCCCCCC-c
Confidence 1256777777777777776 345778888888888888877 6688999999999988 4
Q ss_pred hHHhhcCCCChHH
Q psy3049 135 YMKIYNEPNGTQK 147 (157)
Q Consensus 135 ~~~~~~~~~~l~~ 147 (157)
+|..+..++.++.
T Consensus 276 lp~~l~~l~~L~~ 288 (622)
T 3g06_A 276 LPESLIHLSSETT 288 (622)
T ss_dssp CCGGGGGSCTTCE
T ss_pred CCHHHhhccccCE
Confidence 5667777666543
No 125
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.47 E-value=7.2e-16 Score=103.02 Aligned_cols=130 Identities=17% Similarity=0.227 Sum_probs=106.9
Q ss_pred hhcccCCCEEEecCCcceecCccccCCCCCChhhhcCcccceEecccCCCccccccccccccccEEeccCCCCCCCChhh
Q psy3049 13 ISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEI 92 (157)
Q Consensus 13 ~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 92 (157)
+.....++.++++.+.+... +..+..+|..+..+++|++|++++|.++.++ .+..+++|++|++++|.++.+|..+
T Consensus 14 ~~~~~~l~~l~l~~~~l~~~---~~~l~~l~~~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~ 89 (198)
T 1ds9_A 14 FEERKSVVATEAEKVELHGM---IPPIEKMDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLD 89 (198)
T ss_dssp HHHTTCCCCTTCSEEECCBC---CTTCCCCHHHHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSCSSHH
T ss_pred HHhcccccCcchheeEeccc---cCcHhhhhHHHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcccccchh
Confidence 45667777777877777642 2234455567888999999999999999887 8888999999999999999999888
Q ss_pred hCccccceEEcCCCcccCcchhhcCcCCCcEEEccCCCCCChhH-HhhcCCCChHH
Q psy3049 93 GDLIYLRELCLNNNNLRTLPYELGKLFQIQILGLHGNPLSKDYM-KIYNEPNGTQK 147 (157)
Q Consensus 93 ~~~~~l~~l~l~~n~l~~l~~~~~~~~~L~~l~l~~n~~~~~~~-~~~~~~~~l~~ 147 (157)
..+++|+.|++++|+++.+| .+..+++|+++++++|.+.+..+ ..+..++.++.
T Consensus 90 ~~~~~L~~L~L~~N~l~~l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~ 144 (198)
T 1ds9_A 90 AVADTLEELWISYNQIASLS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLED 144 (198)
T ss_dssp HHHHHCSEEEEEEEECCCHH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSE
T ss_pred hcCCcCCEEECcCCcCCcCC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCE
Confidence 88899999999999999987 58899999999999999997654 56766665543
No 126
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.44 E-value=1.3e-12 Score=94.05 Aligned_cols=103 Identities=29% Similarity=0.368 Sum_probs=73.2
Q ss_pred EEEecCC-cceecCccccCCCCCChhhhcCcccceEeccc-CCCcccc-ccccccccccEEeccCCCCCCCCh-hhhCcc
Q psy3049 21 TLDISNN-KLRYLPSEIGAVKNLSPDLWQFTHLTALYMND-NNLTRLS-GDISLLINLRTLDISNNKLRYLPS-EIGDLI 96 (157)
Q Consensus 21 ~L~l~~~-~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~-~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~ 96 (157)
.++.+++ +++.+|+ + ..+++|+.|++++ |.++.++ ..+..+.+|+.|+|++|.++.++. .+..++
T Consensus 12 ~v~~~~~n~l~~ip~-l----------~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~ 80 (347)
T 2ifg_A 12 GLRCTRDGALDSLHH-L----------PGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTP 80 (347)
T ss_dssp CEECCSSCCCTTTTT-S----------CSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCS
T ss_pred EEEcCCCCCCCccCC-C----------CCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCc
Confidence 4566665 6666654 3 2455678888875 7777765 457778888888888888876644 567788
Q ss_pred ccceEEcCCCcccCcchhhcCcCCCcEEEccCCCCCCh
Q psy3049 97 YLRELCLNNNNLRTLPYELGKLFQIQILGLHGNPLSKD 134 (157)
Q Consensus 97 ~l~~l~l~~n~l~~l~~~~~~~~~L~~l~l~~n~~~~~ 134 (157)
+|+.|+|++|+++.+|..+.....|++|++.+|++.+.
T Consensus 81 ~L~~L~l~~N~l~~~~~~~~~~~~L~~l~l~~N~~~c~ 118 (347)
T 2ifg_A 81 RLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLHCS 118 (347)
T ss_dssp CCCEEECCSSCCSCCCSTTTCSCCCCEEECCSSCCCCC
T ss_pred CCCEEeCCCCccceeCHHHcccCCceEEEeeCCCccCC
Confidence 88888888888887776544333488888888888765
No 127
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.42 E-value=4.5e-14 Score=103.08 Aligned_cols=22 Identities=32% Similarity=0.224 Sum_probs=11.9
Q ss_pred cchhhhcccCCCEEEecCCcce
Q psy3049 9 LSGDISLLINLRTLDISNNKLR 30 (157)
Q Consensus 9 l~~~~~~l~~L~~L~l~~~~l~ 30 (157)
++..+..+++|+.|++++|.++
T Consensus 114 l~~~l~~~~~L~~L~L~~n~l~ 135 (386)
T 2ca6_A 114 LIDFLSKHTPLEHLYLHNNGLG 135 (386)
T ss_dssp HHHHHHHCTTCCEEECCSSCCH
T ss_pred HHHHHHhCCCCCEEECcCCCCC
Confidence 4444555555555555555554
No 128
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.40 E-value=2.4e-12 Score=96.01 Aligned_cols=124 Identities=30% Similarity=0.337 Sum_probs=60.6
Q ss_pred CCCCCCccchhhhcccCCCEEEecCCcceecCccccCCCCC------ChhhhcC-cccceEecccCCCcccccccccccc
Q psy3049 2 NDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNL------SPDLWQF-THLTALYMNDNNLTRLSGDISLLIN 74 (157)
Q Consensus 2 ~~n~i~~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~------~~~~~~~-~~L~~l~l~~~~~~~~~~~~~~~~~ 74 (157)
++|.++.+|.. .++|+.|++++|.++.+|+....++.+ -..+... ++|+++++++|.++.+| .++.+++
T Consensus 79 ~~~~l~~lp~~---~~~L~~L~l~~n~l~~lp~~~~~L~~L~l~~n~l~~l~~~~~~L~~L~L~~n~l~~lp-~~~~l~~ 154 (454)
T 1jl5_A 79 NNLGLSSLPEL---PPHLESLVASCNSLTELPELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEKLP-ELQNSSF 154 (454)
T ss_dssp TTSCCSCCCSC---CTTCSEEECCSSCCSSCCCCCTTCCEEECCSSCCSCCCSCCTTCCEEECCSSCCSSCC-CCTTCTT
T ss_pred cCCccccCCCC---cCCCCEEEccCCcCCccccccCCCcEEECCCCccCcccCCCCCCCEEECcCCCCCCCc-ccCCCCC
Confidence 45555555431 245555555555555554433222111 0000011 35666666666665554 3555566
Q ss_pred ccEEeccCCCCCCCChhhhCccccceEEcCCCcccCcchhhcCcCCCcEEEccCCCCCC
Q psy3049 75 LRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLRTLPYELGKLFQIQILGLHGNPLSK 133 (157)
Q Consensus 75 L~~L~l~~~~~~~~~~~~~~~~~l~~l~l~~n~l~~l~~~~~~~~~L~~l~l~~n~~~~ 133 (157)
|++|++++|.++.+|... .+|+++++++|.++.+| .++++++|+++++++|.+.+
T Consensus 155 L~~L~l~~N~l~~lp~~~---~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~N~l~~ 209 (454)
T 1jl5_A 155 LKIIDVDNNSLKKLPDLP---PSLEFIAAGNNQLEELP-ELQNLPFLTAIYADNNSLKK 209 (454)
T ss_dssp CCEEECCSSCCSCCCCCC---TTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSS
T ss_pred CCEEECCCCcCcccCCCc---ccccEEECcCCcCCcCc-cccCCCCCCEEECCCCcCCc
Confidence 666666666555554322 35555555555555554 34555555555555554443
No 129
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.38 E-value=6.1e-13 Score=97.07 Aligned_cols=118 Identities=25% Similarity=0.257 Sum_probs=79.4
Q ss_pred hhhcccCCCEEEecCCcceec--CccccCCCCCChhhhcCcccceEecccCCCc-----cccccccccccccEEeccCCC
Q psy3049 12 DISLLINLRTLDISNNKLRYL--PSEIGAVKNLSPDLWQFTHLTALYMNDNNLT-----RLSGDISLLINLRTLDISNNK 84 (157)
Q Consensus 12 ~~~~l~~L~~L~l~~~~l~~~--~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~-----~~~~~~~~~~~L~~L~l~~~~ 84 (157)
.+..+++|+.|++++|+++.. ... ++..+..+++|+.|++++|.++ .++..+..+++|+.|++++|.
T Consensus 182 ~l~~~~~L~~L~L~~n~l~~~g~~~l------~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~ 255 (386)
T 2ca6_A 182 TFQSHRLLHTVKMVQNGIRPEGIEHL------LLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCL 255 (386)
T ss_dssp HHHHCTTCCEEECCSSCCCHHHHHHH------HHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCC
T ss_pred HHHhCCCcCEEECcCCCCCHhHHHHH------HHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCC
Confidence 345566666666666666510 000 0013456677888888888874 345566777888888888888
Q ss_pred CCC-----CChhhhC--ccccceEEcCCCcccC-----cchhh-cCcCCCcEEEccCCCCCChh
Q psy3049 85 LRY-----LPSEIGD--LIYLRELCLNNNNLRT-----LPYEL-GKLFQIQILGLHGNPLSKDY 135 (157)
Q Consensus 85 ~~~-----~~~~~~~--~~~l~~l~l~~n~l~~-----l~~~~-~~~~~L~~l~l~~n~~~~~~ 135 (157)
++. ++..+.. +++|+.|++++|.++. +|..+ .++++|+++++++|++++..
T Consensus 256 i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 256 LSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp CCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred CchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence 773 3455533 7888888888888886 67665 56788888888888888665
No 130
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.38 E-value=1.8e-13 Score=97.87 Aligned_cols=145 Identities=17% Similarity=0.167 Sum_probs=89.2
Q ss_pred CCCCCCc--cchhhhcccCCCEEEecCCccee-cCccccCCC-----------C-----CChhhhcCcccceEecccC-C
Q psy3049 2 NDNNLTR--LSGDISLLINLRTLDISNNKLRY-LPSEIGAVK-----------N-----LSPDLWQFTHLTALYMNDN-N 61 (157)
Q Consensus 2 ~~n~i~~--l~~~~~~l~~L~~L~l~~~~l~~-~~~~~~~~~-----------~-----~~~~~~~~~~L~~l~l~~~-~ 61 (157)
++|.++. ++..+..+++|+.|++++|.++. .+..++.++ . ++..+..+++|++|++++| .
T Consensus 101 ~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~ 180 (336)
T 2ast_B 101 SNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFD 180 (336)
T ss_dssp TTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTT
T ss_pred cCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCC
Confidence 4455542 44445666666666666666552 222222111 1 1223456778888888888 7
Q ss_pred Ccc--ccccccccc-cccEEeccCC--CCC--CCChhhhCccccceEEcCCCc-cc-CcchhhcCcCCCcEEEccCCC-C
Q psy3049 62 LTR--LSGDISLLI-NLRTLDISNN--KLR--YLPSEIGDLIYLRELCLNNNN-LR-TLPYELGKLFQIQILGLHGNP-L 131 (157)
Q Consensus 62 ~~~--~~~~~~~~~-~L~~L~l~~~--~~~--~~~~~~~~~~~l~~l~l~~n~-l~-~l~~~~~~~~~L~~l~l~~n~-~ 131 (157)
++. ++..+..++ +|++|++++| .++ .++..+..+++|+.|++++|. ++ ..+..+.++++|+++++++|. +
T Consensus 181 l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~ 260 (336)
T 2ast_B 181 FTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDI 260 (336)
T ss_dssp CCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTC
T ss_pred cChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCC
Confidence 773 455567777 8888888888 343 355666677888888888887 55 445567778888888888873 4
Q ss_pred CChhHHhhcCCCChH
Q psy3049 132 SKDYMKIYNEPNGTQ 146 (157)
Q Consensus 132 ~~~~~~~~~~~~~l~ 146 (157)
.......++.++.++
T Consensus 261 ~~~~~~~l~~~~~L~ 275 (336)
T 2ast_B 261 IPETLLELGEIPTLK 275 (336)
T ss_dssp CGGGGGGGGGCTTCC
T ss_pred CHHHHHHHhcCCCCC
Confidence 444333454444443
No 131
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.37 E-value=3.2e-12 Score=91.94 Aligned_cols=98 Identities=27% Similarity=0.279 Sum_probs=84.2
Q ss_pred CCC-CCCccchhhhcccCCCEEEecC-CcceecCccccCCCCCChhhhcCcccceEecccCCCccccc-cccccccccEE
Q psy3049 2 NDN-NLTRLSGDISLLINLRTLDISN-NKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTRLSG-DISLLINLRTL 78 (157)
Q Consensus 2 ~~n-~i~~l~~~~~~l~~L~~L~l~~-~~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~-~~~~~~~L~~L 78 (157)
+++ .++.+|. +..+.+|+.|++++ |.++.+++. .|..+++|+.|++++|.++.+++ .+..+++|+.|
T Consensus 16 ~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~---------~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L 85 (347)
T 2ifg_A 16 TRDGALDSLHH-LPGAENLTELYIENQQHLQHLELR---------DLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRL 85 (347)
T ss_dssp CSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGG---------GSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEE
T ss_pred CCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChh---------HhccccCCCEEECCCCccceeCHHHhcCCcCCCEE
Confidence 345 8999999 99999999999996 999988864 25678899999999999998764 57899999999
Q ss_pred eccCCCCCCCChhhhCccccceEEcCCCccc
Q psy3049 79 DISNNKLRYLPSEIGDLIYLRELCLNNNNLR 109 (157)
Q Consensus 79 ~l~~~~~~~~~~~~~~~~~l~~l~l~~n~l~ 109 (157)
+|++|.++.+|........|+.|++.+|.+.
T Consensus 86 ~l~~N~l~~~~~~~~~~~~L~~l~l~~N~~~ 116 (347)
T 2ifg_A 86 NLSFNALESLSWKTVQGLSLQELVLSGNPLH 116 (347)
T ss_dssp ECCSSCCSCCCSTTTCSCCCCEEECCSSCCC
T ss_pred eCCCCccceeCHHHcccCCceEEEeeCCCcc
Confidence 9999999999875544445999999999888
No 132
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.32 E-value=3.1e-12 Score=92.67 Aligned_cols=18 Identities=22% Similarity=0.329 Sum_probs=8.3
Q ss_pred hhccc-CCCEEEecCCcce
Q psy3049 13 ISLLI-NLRTLDISNNKLR 30 (157)
Q Consensus 13 ~~~l~-~L~~L~l~~~~l~ 30 (157)
+..++ +|+.|++++|.++
T Consensus 46 l~~~~~~L~~L~Ls~N~l~ 64 (362)
T 3goz_A 46 FANTPASVTSLNLSGNSLG 64 (362)
T ss_dssp HHTCCTTCCEEECCSSCGG
T ss_pred HHhCCCceeEEECcCCCCC
Confidence 33444 4444444444444
No 133
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.26 E-value=1.1e-11 Score=89.35 Aligned_cols=100 Identities=22% Similarity=0.321 Sum_probs=68.4
Q ss_pred CCCCCCccchhhhcccCCCEEEecCCcceecCccccCCCCCChhhhcCcccceEecccCCCcc-ccc-cccccccccE-E
Q psy3049 2 NDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTR-LSG-DISLLINLRT-L 78 (157)
Q Consensus 2 ~~n~i~~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~-~~~-~~~~~~~L~~-L 78 (157)
+++.++.||..+ .++++.|++++|+++.+|++. |.++++|++|++++|.+.. ++. .+..++++.. +
T Consensus 17 ~~~~Lt~iP~~l--~~~l~~L~Ls~N~i~~i~~~~---------f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l 85 (350)
T 4ay9_X 17 QESKVTEIPSDL--PRNAIELRFVLTKLRVIQKGA---------FSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIR 85 (350)
T ss_dssp ESTTCCSCCTTC--CTTCSEEEEESCCCSEECTTS---------STTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEE
T ss_pred cCCCCCccCcCc--CCCCCEEEccCCcCCCcCHHH---------HcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhh
Confidence 467889999766 368999999999999998753 4567778888888887643 432 3455555544 4
Q ss_pred eccCCCCCCCC-hhhhCccccceEEcCCCcccCcc
Q psy3049 79 DISNNKLRYLP-SEIGDLIYLRELCLNNNNLRTLP 112 (157)
Q Consensus 79 ~l~~~~~~~~~-~~~~~~~~l~~l~l~~n~l~~l~ 112 (157)
.+..|+++.++ ..+..+++|+++++++|+++.++
T Consensus 86 ~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~ 120 (350)
T 4ay9_X 86 IEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLP 120 (350)
T ss_dssp EEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCC
T ss_pred cccCCcccccCchhhhhccccccccccccccccCC
Confidence 44556666653 35566677777777776666554
No 134
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.26 E-value=1.3e-11 Score=89.37 Aligned_cols=34 Identities=18% Similarity=0.191 Sum_probs=25.7
Q ss_pred CCCCCCCccchh-hhcccCCCEEEecCCcceecCc
Q psy3049 1 MNDNNLTRLSGD-ISLLINLRTLDISNNKLRYLPS 34 (157)
Q Consensus 1 l~~n~i~~l~~~-~~~l~~L~~L~l~~~~l~~~~~ 34 (157)
++.|.++...++ +...++|+.|++++|.++..+.
T Consensus 5 ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~ 39 (362)
T 3goz_A 5 LTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSIST 39 (362)
T ss_dssp CCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCH
T ss_pred cccccchHHHHHHHhCCCCceEEEccCCCCChHHH
Confidence 577888865555 4455569999999999987653
No 135
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.22 E-value=2.8e-12 Score=95.25 Aligned_cols=89 Identities=25% Similarity=0.234 Sum_probs=60.8
Q ss_pred cccceEecccCCCcc-----ccccccccccccEEeccCCCCCCC-ChhhhC-----ccccceEEcCCCccc-----Ccch
Q psy3049 50 THLTALYMNDNNLTR-----LSGDISLLINLRTLDISNNKLRYL-PSEIGD-----LIYLRELCLNNNNLR-----TLPY 113 (157)
Q Consensus 50 ~~L~~l~l~~~~~~~-----~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~-----~~~l~~l~l~~n~l~-----~l~~ 113 (157)
+.|+.|++++|.++. ++..+..+++|+.|++++|.++.. +..+.. .++|+.|++++|.++ .++.
T Consensus 313 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~ 392 (461)
T 1z7x_W 313 CQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAA 392 (461)
T ss_dssp CCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHH
T ss_pred ccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHH
Confidence 467777777777763 233455667888888888877633 222221 567888888888887 5666
Q ss_pred hhcCcCCCcEEEccCCCCCChhHHh
Q psy3049 114 ELGKLFQIQILGLHGNPLSKDYMKI 138 (157)
Q Consensus 114 ~~~~~~~L~~l~l~~n~~~~~~~~~ 138 (157)
.+..+++|+++++++|.+.+.....
T Consensus 393 ~l~~~~~L~~L~l~~N~i~~~~~~~ 417 (461)
T 1z7x_W 393 TLLANHSLRELDLSNNCLGDAGILQ 417 (461)
T ss_dssp HHHHCCCCCEEECCSSSCCHHHHHH
T ss_pred HHHhCCCccEEECCCCCCCHHHHHH
Confidence 6777888888888888887664433
No 136
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.18 E-value=3.2e-11 Score=86.32 Aligned_cols=98 Identities=11% Similarity=0.171 Sum_probs=83.8
Q ss_pred CcccceEecccCCCccccc-cccccccccEEeccCCCCCCCCh-hhhCccccc-eEEcCCCcccCcch-hhcCcCCCcEE
Q psy3049 49 FTHLTALYMNDNNLTRLSG-DISLLINLRTLDISNNKLRYLPS-EIGDLIYLR-ELCLNNNNLRTLPY-ELGKLFQIQIL 124 (157)
Q Consensus 49 ~~~L~~l~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~l~-~l~l~~n~l~~l~~-~~~~~~~L~~l 124 (157)
+++|+.+++++|.++.++. .|..+.+|+.+++.+| ++.++. ++..+.+|+ .+.+.. .++.++. .|.++++|+.+
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l 302 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYV 302 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEE
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEE
Confidence 6789999999999998865 4788999999999987 777754 788899999 999988 7888864 58899999999
Q ss_pred EccCCCCCChhHHhhcCCCChHHH
Q psy3049 125 GLHGNPLSKDYMKIYNEPNGTQKL 148 (157)
Q Consensus 125 ~l~~n~~~~~~~~~~~~~~~l~~l 148 (157)
++..|.+....+..|.++.+++.+
T Consensus 303 ~l~~n~i~~I~~~aF~~~~~L~~l 326 (329)
T 3sb4_A 303 LATGDKITTLGDELFGNGVPSKLI 326 (329)
T ss_dssp EECSSCCCEECTTTTCTTCCCCEE
T ss_pred EeCCCccCccchhhhcCCcchhhh
Confidence 999999999999999988887654
No 137
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.17 E-value=1.1e-11 Score=92.12 Aligned_cols=20 Identities=20% Similarity=0.360 Sum_probs=12.5
Q ss_pred hhhhcccCCCEEEecCCcce
Q psy3049 11 GDISLLINLRTLDISNNKLR 30 (157)
Q Consensus 11 ~~~~~l~~L~~L~l~~~~l~ 30 (157)
..+..+++|+.|++++|.++
T Consensus 164 ~~l~~~~~L~~L~L~~n~i~ 183 (461)
T 1z7x_W 164 SVLRAKPDFKELTVSNNDIN 183 (461)
T ss_dssp HHHHHCTTCCEEECCSSBCH
T ss_pred HHHhhCCCCCEEECcCCCcc
Confidence 33455666777777766665
No 138
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.14 E-value=1.2e-11 Score=90.11 Aligned_cols=94 Identities=20% Similarity=0.205 Sum_probs=67.4
Q ss_pred CcccceEecccCCCcc-----ccccccccccccEEeccCCCCCC-----CChhhhCccccceEEcCCCcccC-----cch
Q psy3049 49 FTHLTALYMNDNNLTR-----LSGDISLLINLRTLDISNNKLRY-----LPSEIGDLIYLRELCLNNNNLRT-----LPY 113 (157)
Q Consensus 49 ~~~L~~l~l~~~~~~~-----~~~~~~~~~~L~~L~l~~~~~~~-----~~~~~~~~~~l~~l~l~~n~l~~-----l~~ 113 (157)
.+.|+.|++++|.++. ++..+...++|++|++++|.++. ++..+...++|+.|++++|.++. +..
T Consensus 154 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~ 233 (372)
T 3un9_A 154 QCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALAR 233 (372)
T ss_dssp TCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHH
T ss_pred CCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHH
Confidence 4668888888888763 23334567788888888888863 24456667788888888888873 334
Q ss_pred hhcCcCCCcEEEccCCCCCChhHHhhcCC
Q psy3049 114 ELGKLFQIQILGLHGNPLSKDYMKIYNEP 142 (157)
Q Consensus 114 ~~~~~~~L~~l~l~~n~~~~~~~~~~~~~ 142 (157)
.+...++|+++++++|.+.+.....+.++
T Consensus 234 ~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~ 262 (372)
T 3un9_A 234 AAREHPSLELLHLYFNELSSEGRQVLRDL 262 (372)
T ss_dssp HHHHCSSCCEEECTTSSCCHHHHHHHHHC
T ss_pred HHHhCCCCCEEeccCCCCCHHHHHHHHHH
Confidence 45567888999999998887776666543
No 139
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.06 E-value=9.7e-11 Score=83.78 Aligned_cols=75 Identities=20% Similarity=0.281 Sum_probs=57.5
Q ss_pred cccccEEeccCCCCCCCCh-hhhCccccceEEcCCCcccCcchh-hcCcCCCc-EEEccCCCCCChhHHhhcCCCChHHH
Q psy3049 72 LINLRTLDISNNKLRYLPS-EIGDLIYLRELCLNNNNLRTLPYE-LGKLFQIQ-ILGLHGNPLSKDYMKIYNEPNGTQKL 148 (157)
Q Consensus 72 ~~~L~~L~l~~~~~~~~~~-~~~~~~~l~~l~l~~n~l~~l~~~-~~~~~~L~-~l~l~~n~~~~~~~~~~~~~~~l~~l 148 (157)
+++|+.+++.+|.++.++. .+..+.+|+.+++.+| ++.++.. |.++.+|+ .+++.. .+....+..|.++.+++.+
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l 302 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYV 302 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEE
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEE
Confidence 5678888888888887765 6778888888888887 7777654 77888888 888877 6676667778777766543
No 140
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.99 E-value=1.4e-10 Score=84.47 Aligned_cols=131 Identities=19% Similarity=0.153 Sum_probs=89.7
Q ss_pred CCCCCCCccchh-hhcc-----cCCCEEEecCCcceecCccccCCCCCChhhhcCcccceEecccCCCcccc-ccc----
Q psy3049 1 MNDNNLTRLSGD-ISLL-----INLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTRLS-GDI---- 69 (157)
Q Consensus 1 l~~n~i~~l~~~-~~~l-----~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~-~~~---- 69 (157)
+++|.|+..... +..+ .+|+.|++++|.++..... .-...+++++.|++++|.++... ..+
T Consensus 79 Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~--------~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 79 LAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLR--------TLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp CTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHH--------HTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred ecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHH--------HHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 456666643322 3322 6788888888887632110 00123457899999999987431 222
Q ss_pred -cccccccEEeccCCCCCC-----CChhhhCccccceEEcCCCcccC-----cchhhcCcCCCcEEEccCCCCCChhHHh
Q psy3049 70 -SLLINLRTLDISNNKLRY-----LPSEIGDLIYLRELCLNNNNLRT-----LPYELGKLFQIQILGLHGNPLSKDYMKI 138 (157)
Q Consensus 70 -~~~~~L~~L~l~~~~~~~-----~~~~~~~~~~l~~l~l~~n~l~~-----l~~~~~~~~~L~~l~l~~n~~~~~~~~~ 138 (157)
...++|+.|++++|.++. ++..+...++|++|++++|.++. ++..+...++|++|++++|.+++.....
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~ 230 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALA 230 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHH
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHH
Confidence 235789999999999873 44556778899999999999883 3455677889999999999998765444
Q ss_pred h
Q psy3049 139 Y 139 (157)
Q Consensus 139 ~ 139 (157)
+
T Consensus 231 l 231 (372)
T 3un9_A 231 L 231 (372)
T ss_dssp H
T ss_pred H
Confidence 3
No 141
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.87 E-value=6.4e-10 Score=73.40 Aligned_cols=117 Identities=15% Similarity=0.122 Sum_probs=87.4
Q ss_pred hhcccCCCEEEecCC-cceecCccccCCCCCChhhhcCcccceEecccCCCcc-----ccccccccccccEEeccCCCCC
Q psy3049 13 ISLLINLRTLDISNN-KLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTR-----LSGDISLLINLRTLDISNNKLR 86 (157)
Q Consensus 13 ~~~l~~L~~L~l~~~-~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~-----~~~~~~~~~~L~~L~l~~~~~~ 86 (157)
+...+.|+.|++++| .++.-.. ..+.+.+...++|++|++++|.+.. +...+....+|++|++++|.++
T Consensus 32 l~~~~~L~~L~L~~n~~i~~~g~-----~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~ 106 (185)
T 1io0_A 32 QNNDPDLEEVNLNNIMNIPVPTL-----KACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFIS 106 (185)
T ss_dssp HTTCTTCCEEECTTCTTCCHHHH-----HHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCC
T ss_pred HhcCCCCCEEEecCCCCCCHHHH-----HHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCC
Confidence 456788999999999 8874111 0111234456789999999999973 2334556678999999999998
Q ss_pred C-----CChhhhCccccceEEc--CCCcccC-----cchhhcCcCCCcEEEccCCCCCCh
Q psy3049 87 Y-----LPSEIGDLIYLRELCL--NNNNLRT-----LPYELGKLFQIQILGLHGNPLSKD 134 (157)
Q Consensus 87 ~-----~~~~~~~~~~l~~l~l--~~n~l~~-----l~~~~~~~~~L~~l~l~~n~~~~~ 134 (157)
. +...+...++|++|++ ++|.++. +...+...++|++++++.|.+...
T Consensus 107 ~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~~~ 166 (185)
T 1io0_A 107 GSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQGPR 166 (185)
T ss_dssp HHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHHHH
T ss_pred HHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCChH
Confidence 3 4556777789999999 8899983 445567778999999999987644
No 142
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=98.79 E-value=4.1e-09 Score=80.52 Aligned_cols=128 Identities=14% Similarity=0.046 Sum_probs=63.0
Q ss_pred hcccCCCEEEecCCcceecCccccCCCCCChhhhcCcccceEecccCCCcc-----ccccccccccccEEeccCCCCCCC
Q psy3049 14 SLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTR-----LSGDISLLINLRTLDISNNKLRYL 88 (157)
Q Consensus 14 ~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~-----~~~~~~~~~~L~~L~l~~~~~~~~ 88 (157)
..+++|+.|++++|.+++..... ++.-...+++|+.|++++|.++. ++..+..+++|+.|++.+|.++.+
T Consensus 161 ~~~~~L~~L~L~~~~~~~~~~~~-----l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l 235 (592)
T 3ogk_B 161 THCRKIKTLLMEESSFSEKDGKW-----LHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILEL 235 (592)
T ss_dssp HHCTTCSEEECTTCEEECCCSHH-----HHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGG
T ss_pred hhCCCCCEEECccccccCcchhH-----HHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHH
Confidence 46778888888888765322110 00112233444555555444431 111223344444444444444333
Q ss_pred ChhhhC---------------------------ccccceEEcCCCcccCcchhhcCcCCCcEEEccCCCCCChhH-Hhhc
Q psy3049 89 PSEIGD---------------------------LIYLRELCLNNNNLRTLPYELGKLFQIQILGLHGNPLSKDYM-KIYN 140 (157)
Q Consensus 89 ~~~~~~---------------------------~~~l~~l~l~~n~l~~l~~~~~~~~~L~~l~l~~n~~~~~~~-~~~~ 140 (157)
+..+.. +++++.+++..+....+|..+..+++|+++++++|.+.+... ..+.
T Consensus 236 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~ 315 (592)
T 3ogk_B 236 VGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQ 315 (592)
T ss_dssp HHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHT
T ss_pred HHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHH
Confidence 333333 334444444444334555556677778888888777665444 3344
Q ss_pred CCCChH
Q psy3049 141 EPNGTQ 146 (157)
Q Consensus 141 ~~~~l~ 146 (157)
.++.++
T Consensus 316 ~~~~L~ 321 (592)
T 3ogk_B 316 KCPNLE 321 (592)
T ss_dssp TCTTCC
T ss_pred hCcCCC
Confidence 555543
No 143
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=98.71 E-value=6.4e-09 Score=79.48 Aligned_cols=17 Identities=12% Similarity=0.124 Sum_probs=9.0
Q ss_pred hcccCCCEEEecCCcce
Q psy3049 14 SLLINLRTLDISNNKLR 30 (157)
Q Consensus 14 ~~l~~L~~L~l~~~~l~ 30 (157)
..+++|+.|++++|.++
T Consensus 189 ~~~~~L~~L~L~~n~~~ 205 (592)
T 3ogk_B 189 QHNTSLEVLNFYMTEFA 205 (592)
T ss_dssp HHCCCCCEEECTTCCCS
T ss_pred hcCCCccEEEeeccCCC
Confidence 34555555555555554
No 144
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.56 E-value=1.7e-07 Score=68.89 Aligned_cols=31 Identities=32% Similarity=0.515 Sum_probs=22.8
Q ss_pred CCCccchh-hhcccCCCEEEecCCcceecCcc
Q psy3049 5 NLTRLSGD-ISLLINLRTLDISNNKLRYLPSE 35 (157)
Q Consensus 5 ~i~~l~~~-~~~l~~L~~L~l~~~~l~~~~~~ 35 (157)
.++.++.. |.+|.+|+.+++..|.++.++..
T Consensus 167 ~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~ 198 (401)
T 4fdw_A 167 TLEQLKEDIFYYCYNLKKADLSKTKITKLPAS 198 (401)
T ss_dssp TCCEECSSTTTTCTTCCEEECTTSCCSEECTT
T ss_pred CccEehHHHhhCcccCCeeecCCCcceEechh
Confidence 45556543 78888899999988888777654
No 145
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.53 E-value=1.5e-07 Score=62.02 Aligned_cols=94 Identities=14% Similarity=0.109 Sum_probs=74.0
Q ss_pred hhcCcccceEecccC-CCcc-----ccccccccccccEEeccCCCCCC-----CChhhhCccccceEEcCCCcccC----
Q psy3049 46 LWQFTHLTALYMNDN-NLTR-----LSGDISLLINLRTLDISNNKLRY-----LPSEIGDLIYLRELCLNNNNLRT---- 110 (157)
Q Consensus 46 ~~~~~~L~~l~l~~~-~~~~-----~~~~~~~~~~L~~L~l~~~~~~~-----~~~~~~~~~~l~~l~l~~n~l~~---- 110 (157)
+...+.|+.|++++| .+.. +...+...+++++|++++|.++. +...+...++|++|++++|.++.
T Consensus 32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~ 111 (185)
T 1io0_A 32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGIL 111 (185)
T ss_dssp HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHH
T ss_pred HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHH
Confidence 445788999999999 8873 23345567889999999999973 34556667899999999999993
Q ss_pred -cchhhcCcCCCcEEEc--cCCCCCChhHHhh
Q psy3049 111 -LPYELGKLFQIQILGL--HGNPLSKDYMKIY 139 (157)
Q Consensus 111 -l~~~~~~~~~L~~l~l--~~n~~~~~~~~~~ 139 (157)
+...+...++|+++++ +.|.+.+.....+
T Consensus 112 ~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l 143 (185)
T 1io0_A 112 ALVEALQSNTSLIELRIDNQSQPLGNNVEMEI 143 (185)
T ss_dssp HHHHGGGGCSSCCEEECCCCSSCCCHHHHHHH
T ss_pred HHHHHHHhCCCceEEEecCCCCCCCHHHHHHH
Confidence 4556778889999999 8899997755444
No 146
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.44 E-value=4.3e-08 Score=68.20 Aligned_cols=65 Identities=32% Similarity=0.432 Sum_probs=49.9
Q ss_pred cccccccEEeccCCCCCCC---ChhhhCccccceEEcCCCcccCcchhhcCcC--CCcEEEccCCCCCChh
Q psy3049 70 SLLINLRTLDISNNKLRYL---PSEIGDLIYLRELCLNNNNLRTLPYELGKLF--QIQILGLHGNPLSKDY 135 (157)
Q Consensus 70 ~~~~~L~~L~l~~~~~~~~---~~~~~~~~~l~~l~l~~n~l~~l~~~~~~~~--~L~~l~l~~n~~~~~~ 135 (157)
..++.|+.|++++|.++.+ +..+..+++|+.|++++|+++.+. .+..+. .|++|+|++|++++..
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~-~l~~l~~l~L~~L~L~~Npl~~~~ 236 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSER-ELDKIKGLKLEELWLDGNSLCDTF 236 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGG-GGGGGTTSCCSEEECTTSTTGGGC
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCch-hhhhcccCCcceEEccCCcCcccc
Confidence 3577899999999988865 355667889999999999998763 233344 8999999999988643
No 147
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.37 E-value=3.2e-08 Score=75.56 Aligned_cols=16 Identities=6% Similarity=0.032 Sum_probs=8.7
Q ss_pred cccCCCEEEecCCcce
Q psy3049 15 LLINLRTLDISNNKLR 30 (157)
Q Consensus 15 ~l~~L~~L~l~~~~l~ 30 (157)
.+++|+.|+++++.++
T Consensus 103 ~~~~L~~L~L~~~~~~ 118 (594)
T 2p1m_B 103 SYTWLEEIRLKRMVVT 118 (594)
T ss_dssp HCTTCCEEEEESCBCC
T ss_pred hCCCCCeEEeeCcEEc
Confidence 3455555565555544
No 148
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.34 E-value=9.3e-07 Score=61.48 Aligned_cols=77 Identities=27% Similarity=0.357 Sum_probs=59.8
Q ss_pred cCcccceEecccCCCcccc---ccccccccccEEeccCCCCCCCChhhhCcc--ccceEEcCCCccc-Ccc-------hh
Q psy3049 48 QFTHLTALYMNDNNLTRLS---GDISLLINLRTLDISNNKLRYLPSEIGDLI--YLRELCLNNNNLR-TLP-------YE 114 (157)
Q Consensus 48 ~~~~L~~l~l~~~~~~~~~---~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~--~l~~l~l~~n~l~-~l~-------~~ 114 (157)
.++.|+.|++++|.++.++ ..+..+++|+.|++++|.++.+. .+..+. +|+.|++.+|.+. .+| ..
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~-~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~i 246 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSER-ELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAI 246 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGG-GGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHH
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCch-hhhhcccCCcceEEccCCcCccccCcchhHHHHH
Confidence 4778999999999998654 44568899999999999998762 233333 8999999999987 344 23
Q ss_pred hcCcCCCcEEE
Q psy3049 115 LGKLFQIQILG 125 (157)
Q Consensus 115 ~~~~~~L~~l~ 125 (157)
+..+|+|+.||
T Consensus 247 l~~~P~L~~LD 257 (267)
T 3rw6_A 247 RERFPKLLRLD 257 (267)
T ss_dssp HHHCTTCCEES
T ss_pred HHHCcccCeEC
Confidence 67889999886
No 149
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.29 E-value=7.2e-08 Score=73.65 Aligned_cols=88 Identities=19% Similarity=0.197 Sum_probs=44.8
Q ss_pred cchhhhcccCCCEEEecCCcceecCc-cccCCCCCChhhhcCcccceEecccCC--Cc--cccccccccccccEEeccCC
Q psy3049 9 LSGDISLLINLRTLDISNNKLRYLPS-EIGAVKNLSPDLWQFTHLTALYMNDNN--LT--RLSGDISLLINLRTLDISNN 83 (157)
Q Consensus 9 l~~~~~~l~~L~~L~l~~~~l~~~~~-~~~~~~~~~~~~~~~~~L~~l~l~~~~--~~--~~~~~~~~~~~L~~L~l~~~ 83 (157)
++.....+++|+.|++++|.+++... .+.. -...+++|+.|++++|. +. .+......+++|+.|++.+|
T Consensus 148 l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~------~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~ 221 (594)
T 2p1m_B 148 LAAIAATCRNLKELDLRESDVDDVSGHWLSH------FPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRA 221 (594)
T ss_dssp HHHHHHHCTTCCEEECTTCEEECCCGGGGGG------SCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTT
T ss_pred HHHHHHhCCCCCEEeCcCCccCCcchHHHHH------HhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCC
Confidence 33335578999999999998775321 1111 11234566666666665 21 11111233456666666655
Q ss_pred -CCCCCChhhhCccccceEE
Q psy3049 84 -KLRYLPSEIGDLIYLRELC 102 (157)
Q Consensus 84 -~~~~~~~~~~~~~~l~~l~ 102 (157)
.++.++..+..+++|+.++
T Consensus 222 ~~~~~l~~~~~~~~~L~~L~ 241 (594)
T 2p1m_B 222 VPLEKLATLLQRAPQLEELG 241 (594)
T ss_dssp SCHHHHHHHHHHCTTCSEEE
T ss_pred CcHHHHHHHHhcCCcceEcc
Confidence 2223333333444444444
No 150
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.28 E-value=4.3e-06 Score=61.46 Aligned_cols=136 Identities=15% Similarity=0.236 Sum_probs=91.4
Q ss_pred CCCCccchh-hhcccCCCEEEecCCcceecCcccc------------CCCCC-ChhhhcCcccceEecccCCCc-----c
Q psy3049 4 NNLTRLSGD-ISLLINLRTLDISNNKLRYLPSEIG------------AVKNL-SPDLWQFTHLTALYMNDNNLT-----R 64 (157)
Q Consensus 4 n~i~~l~~~-~~~l~~L~~L~l~~~~l~~~~~~~~------------~~~~~-~~~~~~~~~L~~l~l~~~~~~-----~ 64 (157)
+.++.|+.. |.++.+|+.+.+..+ ++.++...- .+..+ ...|..+++|+.+.+.++.+. .
T Consensus 212 ~~l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~~~L~~i~lp~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~ 290 (401)
T 4fdw_A 212 VTLKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRESGITTVKLPNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAM 290 (401)
T ss_dssp TTCCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTTCCCSEEEEETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCE
T ss_pred CchheehhhHhhCCCCCCEEecCCC-ccCccccccccCCccEEEeCCCccEEChhHhhCCCCCCEEEeCCccccCCcccE
Confidence 346666654 788888999888764 555544221 11122 234667788888888877664 3
Q ss_pred cc-ccccccccccEEeccCCCCCCCCh-hhhCccccceEEcCCCcccCcchh-hcCcCCCcEEEccCCCCCChhHHhhcC
Q psy3049 65 LS-GDISLLINLRTLDISNNKLRYLPS-EIGDLIYLRELCLNNNNLRTLPYE-LGKLFQIQILGLHGNPLSKDYMKIYNE 141 (157)
Q Consensus 65 ~~-~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~l~~l~l~~n~l~~l~~~-~~~~~~L~~l~l~~n~~~~~~~~~~~~ 141 (157)
++ ..|..+.+|+.+.+.. .++.++. .+..+.+|+.+.+..+ ++.++.. |.++ +|+.+++.+|.........|.+
T Consensus 291 I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~ 367 (401)
T 4fdw_A 291 IHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYG 367 (401)
T ss_dssp ECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCC
T ss_pred ECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccC
Confidence 43 4567788888888874 4666643 6777888999988554 7777644 6677 9999999988777666666655
Q ss_pred CC
Q psy3049 142 PN 143 (157)
Q Consensus 142 ~~ 143 (157)
++
T Consensus 368 ~~ 369 (401)
T 4fdw_A 368 FP 369 (401)
T ss_dssp SC
T ss_pred CC
Confidence 43
No 151
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=98.24 E-value=4e-06 Score=52.02 Aligned_cols=56 Identities=32% Similarity=0.412 Sum_probs=29.7
Q ss_pred EEeccCCCCC--CCChhhhCccccceEEcCCCcccCcchh-hcCcCCCcEEEccCCCCCCh
Q psy3049 77 TLDISNNKLR--YLPSEIGDLIYLRELCLNNNNLRTLPYE-LGKLFQIQILGLHGNPLSKD 134 (157)
Q Consensus 77 ~L~l~~~~~~--~~~~~~~~~~~l~~l~l~~n~l~~l~~~-~~~~~~L~~l~l~~n~~~~~ 134 (157)
.++-+++.++ .+|..+ ..+++.|+|++|+|+.++.. +..+++|++++|++|++.+.
T Consensus 12 ~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~Cd 70 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCD 70 (130)
T ss_dssp EEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBCS
T ss_pred EEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeecc
Confidence 3444444444 444432 13455666666666665543 45556666666666666543
No 152
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.06 E-value=1.3e-05 Score=58.18 Aligned_cols=68 Identities=19% Similarity=0.200 Sum_probs=37.7
Q ss_pred cccccEEeccCCCCCC-CChhh---hCccccceEEcCCCcccC-----cchhhcCcCCCcEEEccCCCCCChhHHhh
Q psy3049 72 LINLRTLDISNNKLRY-LPSEI---GDLIYLRELCLNNNNLRT-----LPYELGKLFQIQILGLHGNPLSKDYMKIY 139 (157)
Q Consensus 72 ~~~L~~L~l~~~~~~~-~~~~~---~~~~~l~~l~l~~n~l~~-----l~~~~~~~~~L~~l~l~~n~~~~~~~~~~ 139 (157)
+++|+.|++.+|.++. .+..+ ..+++|+.|+++.|.++. ++..+.++++|+.|+++.|.+++.....+
T Consensus 251 ~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l 327 (362)
T 2ra8_A 251 FPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKEL 327 (362)
T ss_dssp CTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHH
T ss_pred CCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHH
Confidence 5566666666665542 11122 135666777776666653 22223455667777777666665554444
No 153
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.06 E-value=3.7e-06 Score=60.96 Aligned_cols=120 Identities=16% Similarity=0.120 Sum_probs=79.8
Q ss_pred cchhhhcccCCCEEEecCCcceecCccccCCCCCChhhhcCcccceEecccCCCccc-ccccc--ccccccEEeccC--C
Q psy3049 9 LSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTRL-SGDIS--LLINLRTLDISN--N 83 (157)
Q Consensus 9 l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~-~~~~~--~~~~L~~L~l~~--~ 83 (157)
++..+..+++|+.|.++++.-..+++ + .+++|+.|++..+.+..- ...+. .+++|+.|++.. +
T Consensus 164 L~~ll~~~P~L~~L~L~g~~~l~l~~-----------~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~ 231 (362)
T 2ra8_A 164 LSPVLDAMPLLNNLKIKGTNNLSIGK-----------K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVE 231 (362)
T ss_dssp CHHHHHTCTTCCEEEEECCBTCBCCS-----------C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCG
T ss_pred HHHHHhcCCCCcEEEEeCCCCceecc-----------c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEecccc
Confidence 44556778999999998873112221 1 367899999998887632 12232 678999998853 1
Q ss_pred C------CCCCChhh--hCccccceEEcCCCcccC-cchh---hcCcCCCcEEEccCCCCCChhHHhhc
Q psy3049 84 K------LRYLPSEI--GDLIYLRELCLNNNNLRT-LPYE---LGKLFQIQILGLHGNPLSKDYMKIYN 140 (157)
Q Consensus 84 ~------~~~~~~~~--~~~~~l~~l~l~~n~l~~-l~~~---~~~~~~L~~l~l~~n~~~~~~~~~~~ 140 (157)
. +..+...+ ..+++|++|++.+|.+.. .+.. ...+++|++|+|+.|.+.+..+..+.
T Consensus 232 ~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~ 300 (362)
T 2ra8_A 232 DYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLL 300 (362)
T ss_dssp GGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHH
T ss_pred ccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHH
Confidence 1 11222222 247899999999998873 2222 24688999999999999886555543
No 154
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.00 E-value=9.1e-06 Score=52.95 Aligned_cols=84 Identities=11% Similarity=0.116 Sum_probs=59.7
Q ss_pred ccceEecccCCCccc-cccccccccccEEeccCC-CCCCC-ChhhhC----ccccceEEcCCC-cccCc-chhhcCcCCC
Q psy3049 51 HLTALYMNDNNLTRL-SGDISLLINLRTLDISNN-KLRYL-PSEIGD----LIYLRELCLNNN-NLRTL-PYELGKLFQI 121 (157)
Q Consensus 51 ~L~~l~l~~~~~~~~-~~~~~~~~~L~~L~l~~~-~~~~~-~~~~~~----~~~l~~l~l~~n-~l~~l-~~~~~~~~~L 121 (157)
.|+.++++++.++.. -..+..+++|+.|++++| .++.. -..+.. .++|++|++++| ++++- -..+.++++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L 141 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL 141 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence 589999999988742 244677889999999998 47632 123443 247999999998 47732 1346788999
Q ss_pred cEEEccCCC-CCCh
Q psy3049 122 QILGLHGNP-LSKD 134 (157)
Q Consensus 122 ~~l~l~~n~-~~~~ 134 (157)
++|++++++ +++.
T Consensus 142 ~~L~L~~c~~Itd~ 155 (176)
T 3e4g_A 142 KYLFLSDLPGVKEK 155 (176)
T ss_dssp CEEEEESCTTCCCH
T ss_pred CEEECCCCCCCCch
Confidence 999999875 5543
No 155
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.78 E-value=0.00016 Score=52.32 Aligned_cols=94 Identities=15% Similarity=0.131 Sum_probs=57.5
Q ss_pred hhcCcccceEecccCCCcccc-ccccccccccEEeccCCCCCCCC-hhhhCccccceEEcCCCcccCcch-hhcCcCCCc
Q psy3049 46 LWQFTHLTALYMNDNNLTRLS-GDISLLINLRTLDISNNKLRYLP-SEIGDLIYLRELCLNNNNLRTLPY-ELGKLFQIQ 122 (157)
Q Consensus 46 ~~~~~~L~~l~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~l~~l~l~~n~l~~l~~-~~~~~~~L~ 122 (157)
+..+..++.+.+..+ +..++ ..+..+.+|+.+.+.++.++.++ ..+..+.+|+.+.+..+ ++.|.. .|.++.+|+
T Consensus 259 F~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~ 336 (379)
T 4h09_A 259 LQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALS 336 (379)
T ss_dssp TTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCC
T ss_pred cceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCC
Confidence 445556666666543 34333 34566777888888777777664 36777778888877543 666654 366777777
Q ss_pred EEEccCCCCCChhHHhhcCC
Q psy3049 123 ILGLHGNPLSKDYMKIYNEP 142 (157)
Q Consensus 123 ~l~l~~n~~~~~~~~~~~~~ 142 (157)
.+.+..+ +.......|.++
T Consensus 337 ~i~ip~~-v~~I~~~aF~~c 355 (379)
T 4h09_A 337 TISYPKS-ITLIESGAFEGS 355 (379)
T ss_dssp CCCCCTT-CCEECTTTTTTS
T ss_pred EEEECCc-cCEEchhHhhCC
Confidence 7777543 443334444443
No 156
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.72 E-value=1.6e-05 Score=52.68 Aligned_cols=113 Identities=15% Similarity=0.139 Sum_probs=76.2
Q ss_pred cccCCCEEEecCC-cceecCccccCCCCCChhhhcCcccceEecccCCCcc-----ccccccccccccEEeccCCCCC--
Q psy3049 15 LLINLRTLDISNN-KLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTR-----LSGDISLLINLRTLDISNNKLR-- 86 (157)
Q Consensus 15 ~l~~L~~L~l~~~-~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~-----~~~~~~~~~~L~~L~l~~~~~~-- 86 (157)
+-+.|+.|+++++ ++..-.. ..+.+.+..-+.|+.|++++|.+.. +...+..-++|+.|+++.|.|+
T Consensus 39 ~n~~L~~L~L~~nn~igd~ga-----~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~ 113 (197)
T 1pgv_A 39 DDTDLKEVNINNMKRVSKERI-----RSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPE 113 (197)
T ss_dssp TCSSCCEEECTTCCSSCHHHH-----HHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHH
T ss_pred cCCCccEEECCCCCCCCHHHH-----HHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHH
Confidence 4467999999885 7763110 0111234445679999999999872 2333456678999999999998
Q ss_pred ---CCChhhhCccccceEEcCCC---ccc-----CcchhhcCcCCCcEEEccCCCCC
Q psy3049 87 ---YLPSEIGDLIYLRELCLNNN---NLR-----TLPYELGKLFQIQILGLHGNPLS 132 (157)
Q Consensus 87 ---~~~~~~~~~~~l~~l~l~~n---~l~-----~l~~~~~~~~~L~~l~l~~n~~~ 132 (157)
.+.+.+..-..|+.|+++++ .+. .+...+..-+.|..++++.|.+.
T Consensus 114 Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~g 170 (197)
T 1pgv_A 114 LLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASME 170 (197)
T ss_dssp HHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCHH
T ss_pred HHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCcc
Confidence 23455666778999999765 344 23344666788999999876543
No 157
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.70 E-value=2.6e-05 Score=50.78 Aligned_cols=85 Identities=7% Similarity=0.106 Sum_probs=61.2
Q ss_pred cCCCEEEecCCcceecCccccCCCCCChhhhcCcccceEecccCC-Cccc-cccccc----cccccEEeccCC-CCCCC-
Q psy3049 17 INLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNN-LTRL-SGDISL----LINLRTLDISNN-KLRYL- 88 (157)
Q Consensus 17 ~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~-~~~~-~~~~~~----~~~L~~L~l~~~-~~~~~- 88 (157)
..|+.||++++.++.. ++ ..+.++++|+.|++++|. ++.. -..+.. .++|++|++++| +++.-
T Consensus 61 ~~L~~LDLs~~~Itd~--GL-------~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~G 131 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSI--GF-------DHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKG 131 (176)
T ss_dssp CCEEEEEEESCCCCGG--GG-------GGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHH
T ss_pred ceEeEEeCcCCCccHH--HH-------HHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHH
Confidence 4799999999988742 12 124578899999999995 6632 223333 347999999998 58742
Q ss_pred ChhhhCccccceEEcCCCc-ccC
Q psy3049 89 PSEIGDLIYLRELCLNNNN-LRT 110 (157)
Q Consensus 89 ~~~~~~~~~l~~l~l~~n~-l~~ 110 (157)
-..+..+++|+.|++++|. ++.
T Consensus 132 l~~L~~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 132 IIALHHFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp HHHGGGCTTCCEEEEESCTTCCC
T ss_pred HHHHhcCCCCCEEECCCCCCCCc
Confidence 2346678999999999984 553
No 158
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.67 E-value=8.8e-05 Score=49.16 Aligned_cols=89 Identities=17% Similarity=0.101 Sum_probs=67.3
Q ss_pred cCcccceEecccC-CCcc-----ccccccccccccEEeccCCCCC-----CCChhhhCccccceEEcCCCccc-----Cc
Q psy3049 48 QFTHLTALYMNDN-NLTR-----LSGDISLLINLRTLDISNNKLR-----YLPSEIGDLIYLRELCLNNNNLR-----TL 111 (157)
Q Consensus 48 ~~~~L~~l~l~~~-~~~~-----~~~~~~~~~~L~~L~l~~~~~~-----~~~~~~~~~~~l~~l~l~~n~l~-----~l 111 (157)
.-+.|+.|+++++ .+.. +...+..-+.|+.|+|.+|.++ .+...+..-..|+.|+++.|.|+ .+
T Consensus 39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~al 118 (197)
T 1pgv_A 39 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL 118 (197)
T ss_dssp TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred cCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHH
Confidence 3567999999986 7762 2344566788999999999998 34556777789999999999999 34
Q ss_pred chhhcCcCCCcEEEccCC---CCCChhH
Q psy3049 112 PYELGKLFQIQILGLHGN---PLSKDYM 136 (157)
Q Consensus 112 ~~~~~~~~~L~~l~l~~n---~~~~~~~ 136 (157)
...+..-..|++|+|++| .+.....
T Consensus 119 a~aL~~N~tL~~L~L~n~~~~~ig~~g~ 146 (197)
T 1pgv_A 119 LRSTLVTQSIVEFKADNQRQSVLGNQVE 146 (197)
T ss_dssp HHHTTTTCCCSEEECCCCSSCCCCHHHH
T ss_pred HHHHhhCCceeEEECCCCcCcCcCHHHH
Confidence 455677788999999865 4554433
No 159
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.41 E-value=0.0015 Score=47.61 Aligned_cols=120 Identities=12% Similarity=0.234 Sum_probs=77.6
Q ss_pred hhcccCCCEEEecCCcceecCccccCCCCCChhhhcCcccceEecccCCCcccc-ccccccccccEEeccCCCCCCCC-h
Q psy3049 13 ISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTRLS-GDISLLINLRTLDISNNKLRYLP-S 90 (157)
Q Consensus 13 ~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~-~ 90 (157)
|.++..|+.+.+..+ +..+... .+..+..|+.+.+. +.++.++ ..|..+.+|+.+.+..+ ++.+. .
T Consensus 261 F~~c~~L~~i~lp~~-~~~I~~~---------aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~ 328 (394)
T 4gt6_A 261 FDSCAYLASVKMPDS-VVSIGTG---------AFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDD 328 (394)
T ss_dssp TTTCSSCCEEECCTT-CCEECTT---------TTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTT
T ss_pred eeecccccEEecccc-cceecCc---------ccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHh
Confidence 666777777777554 2233332 25567778888885 3455554 34677888999988764 55554 4
Q ss_pred hhhCccccceEEcCCCcccCcch-hhcCcCCCcEEEccCCCCCChhHHhhcCCCChHHH
Q psy3049 91 EIGDLIYLRELCLNNNNLRTLPY-ELGKLFQIQILGLHGNPLSKDYMKIYNEPNGTQKL 148 (157)
Q Consensus 91 ~~~~~~~l~~l~l~~n~l~~l~~-~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~l~~l 148 (157)
++..+.+|+.+.+..+ ++.+.. .|.++.+|+.+++.++... ...+..+.+++.+
T Consensus 329 aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~---~~~~~~~~~L~~i 383 (394)
T 4gt6_A 329 AFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQ---WNAISTDSGLQNL 383 (394)
T ss_dssp TTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHH---HHTCBCCCCC---
T ss_pred HhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceee---hhhhhccCCCCEE
Confidence 6778889999988654 777764 4788899999998876422 2344555555544
No 160
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.32 E-value=0.0012 Score=48.01 Aligned_cols=105 Identities=11% Similarity=0.192 Sum_probs=72.3
Q ss_pred hhhcccCCCEEEecCCcceecCccccCCCCCChhhhcCcccceEecccCCCcccc-ccccccccccEEeccCCCCCCCCh
Q psy3049 12 DISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTRLS-GDISLLINLRTLDISNNKLRYLPS 90 (157)
Q Consensus 12 ~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~ 90 (157)
.+.++..|+.+.+. +.+..+++.. |..+.+|+.+.+..+ ++.+. ..|..+.+|+.+.+..+ ++.+..
T Consensus 283 aF~~c~~L~~i~l~-~~i~~I~~~a---------F~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~ 350 (394)
T 4gt6_A 283 AFMNCPALQDIEFS-SRITELPESV---------FAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPE 350 (394)
T ss_dssp TTTTCTTCCEEECC-TTCCEECTTT---------TTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCG
T ss_pred ccccccccccccCC-CcccccCcee---------ecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhH
Confidence 37788999999986 4577777653 678889999999765 56554 45778899999999654 777754
Q ss_pred -hhhCccccceEEcCCCcccCcchhhcCcCCCcEEEccCCC
Q psy3049 91 -EIGDLIYLRELCLNNNNLRTLPYELGKLFQIQILGLHGNP 130 (157)
Q Consensus 91 -~~~~~~~l~~l~l~~n~l~~l~~~~~~~~~L~~l~l~~n~ 130 (157)
++..+.+|+.+.+.++... + ..+.....|+.+.+..+.
T Consensus 351 ~aF~~C~~L~~i~~~~~~~~-~-~~~~~~~~L~~i~i~~~~ 389 (394)
T 4gt6_A 351 SAFSNCTALNNIEYSGSRSQ-W-NAISTDSGLQNLPVAPGS 389 (394)
T ss_dssp GGGTTCTTCCEEEESSCHHH-H-HTCBCCCCC---------
T ss_pred hHhhCCCCCCEEEECCceee-h-hhhhccCCCCEEEeCCCC
Confidence 7889999999999887432 1 345677788888776654
No 161
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.30 E-value=0.00041 Score=42.83 Aligned_cols=55 Identities=31% Similarity=0.378 Sum_probs=37.1
Q ss_pred CEEEecCCcce--ecCccccCCCCCChhhhcCcccceEecccCCCccccc-cccccccccEEeccCCCCC
Q psy3049 20 RTLDISNNKLR--YLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTRLSG-DISLLINLRTLDISNNKLR 86 (157)
Q Consensus 20 ~~L~l~~~~l~--~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~ 86 (157)
..++.++++++ .+|..+. ++++.|++++|.++.++. .+..+.+|+.|+|.+|.+.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp------------~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP------------VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC------------TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CEEEeCCCCCccccCCCCCC------------cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 35667777776 6665431 247778888888877754 3566777788888877665
No 162
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.27 E-value=0.0013 Score=47.61 Aligned_cols=100 Identities=13% Similarity=0.189 Sum_probs=73.4
Q ss_pred hhcCcccceEecccCCCcccc-ccccccccccEEeccCCCCCCCC-hhhhCccccceEEcCCCcccCcch-hhcCcCCCc
Q psy3049 46 LWQFTHLTALYMNDNNLTRLS-GDISLLINLRTLDISNNKLRYLP-SEIGDLIYLRELCLNNNNLRTLPY-ELGKLFQIQ 122 (157)
Q Consensus 46 ~~~~~~L~~l~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~l~~l~l~~n~l~~l~~-~~~~~~~L~ 122 (157)
+..+..|+.+.+..+ ++.+. ..+..+.+++.+.+..+ ++.++ ..+..+.+|+.+.+.++.++.++. .|.++.+|+
T Consensus 236 f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~ 313 (379)
T 4h09_A 236 FYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLS 313 (379)
T ss_dssp TTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCC
T ss_pred ccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCC
Confidence 456677888888765 45443 34567788888888654 55554 367888999999999988998875 488899999
Q ss_pred EEEccCCCCCChhHHhhcCCCChHHH
Q psy3049 123 ILGLHGNPLSKDYMKIYNEPNGTQKL 148 (157)
Q Consensus 123 ~l~l~~n~~~~~~~~~~~~~~~l~~l 148 (157)
.+.+..+ +.......|.++.+|+.+
T Consensus 314 ~i~lp~~-l~~I~~~aF~~C~~L~~i 338 (379)
T 4h09_A 314 SVTLPTA-LKTIQVYAFKNCKALSTI 338 (379)
T ss_dssp EEECCTT-CCEECTTTTTTCTTCCCC
T ss_pred EEEcCcc-ccEEHHHHhhCCCCCCEE
Confidence 9999654 565666778777766543
No 163
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.13 E-value=0.0028 Score=46.12 Aligned_cols=95 Identities=11% Similarity=0.161 Sum_probs=58.8
Q ss_pred hhcCcccceEecccCCCcccc-ccccccccccEEeccCCCCCCCC-hhhhCccccceEEcCCCcccCcch-hhcCcCCCc
Q psy3049 46 LWQFTHLTALYMNDNNLTRLS-GDISLLINLRTLDISNNKLRYLP-SEIGDLIYLRELCLNNNNLRTLPY-ELGKLFQIQ 122 (157)
Q Consensus 46 ~~~~~~L~~l~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~l~~l~l~~n~l~~l~~-~~~~~~~L~ 122 (157)
+..+.+|+.+.+..+ ++.+. ..+..+.+|+.+++..+ ++.+. .++..+.+|+.+.+..+ ++.+.. .|.++.+|+
T Consensus 293 F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~ 369 (394)
T 4fs7_A 293 FYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLK 369 (394)
T ss_dssp TTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCC
T ss_pred ccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCC
Confidence 445566777776544 44443 34566777888877643 55554 36777788888888665 666654 477778888
Q ss_pred EEEccCCCCCChhHHhhcCCCCh
Q psy3049 123 ILGLHGNPLSKDYMKIYNEPNGT 145 (157)
Q Consensus 123 ~l~l~~n~~~~~~~~~~~~~~~l 145 (157)
.+++..+- . .+...|.++.++
T Consensus 370 ~i~lp~~~-~-~~~~~F~~c~~L 390 (394)
T 4fs7_A 370 KVELPKRL-E-QYRYDFEDTTKF 390 (394)
T ss_dssp EEEEEGGG-G-GGGGGBCTTCEE
T ss_pred EEEECCCC-E-EhhheecCCCCC
Confidence 88876541 1 223445555444
No 164
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=96.98 E-value=0.0024 Score=46.47 Aligned_cols=99 Identities=12% Similarity=0.216 Sum_probs=68.2
Q ss_pred hhcccCCCEEEecCCcceecCccccCCCCCChhhhcCcccceEecccCCCcccc-ccccccccccEEeccCCCCCCCC-h
Q psy3049 13 ISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTRLS-GDISLLINLRTLDISNNKLRYLP-S 90 (157)
Q Consensus 13 ~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~-~ 90 (157)
+..+.+|+.+.+..+ +..+++. .|..+.+|+.+.+..+ ++.+. ..|..+.+|+.+.+..+ ++.+. .
T Consensus 293 F~~~~~L~~i~l~~~-i~~I~~~---------aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~ 360 (394)
T 4fs7_A 293 FYGCSSLTEVKLLDS-VKFIGEE---------AFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGAN 360 (394)
T ss_dssp TTTCTTCCEEEECTT-CCEECTT---------TTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTT
T ss_pred ccccccccccccccc-cceechh---------hhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHH
Confidence 445555666655443 4444433 3667888999999754 66664 45778899999999776 66664 4
Q ss_pred hhhCccccceEEcCCCcccCcchhhcCcCCCcEE
Q psy3049 91 EIGDLIYLRELCLNNNNLRTLPYELGKLFQIQIL 124 (157)
Q Consensus 91 ~~~~~~~l~~l~l~~n~l~~l~~~~~~~~~L~~l 124 (157)
++..+.+|+.+.+..+ ++.+...+.++++|+.+
T Consensus 361 aF~~C~~L~~i~lp~~-~~~~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 361 AFQGCINLKKVELPKR-LEQYRYDFEDTTKFKWI 393 (394)
T ss_dssp TBTTCTTCCEEEEEGG-GGGGGGGBCTTCEEEEE
T ss_pred HhhCCCCCCEEEECCC-CEEhhheecCCCCCcEE
Confidence 7888999999998654 55555557777777654
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=77.23 E-value=4.4 Score=23.31 Aligned_cols=49 Identities=12% Similarity=0.160 Sum_probs=32.2
Q ss_pred CCCCCccchh-hhcccCCCEEEecCCcceecCccccCCCCCChhhhcCcccceEecccCC
Q psy3049 3 DNNLTRLSGD-ISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNN 61 (157)
Q Consensus 3 ~n~i~~l~~~-~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~ 61 (157)
+..++.|... |.++..|+.+.+..+ ++.+.+. .|..+.+|+.+.+....
T Consensus 5 g~~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~---------aF~~C~~L~~i~~~~~~ 54 (100)
T 2lz0_A 5 GEPVVGMDKSLFAGNTVIREITVQPN-IGLLYDG---------MFSGCTALEKLILTGED 54 (100)
T ss_dssp CCCCCSSCSCTTTTCTTCCCEEECTT-SSCCCTT---------SSTTCTTCCCEEECCSC
T ss_pred CCccCEecHHHhcCCCCCcEEEcCCc-hheEcHH---------HHhccCCccEEEEcCCC
Confidence 4566777654 788888888887664 5555443 25667777777776554
Done!