RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy3049
(157 letters)
>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function
unknown].
Length = 394
Score = 49.6 bits (118), Expect = 9e-08
Identities = 44/131 (33%), Positives = 65/131 (49%), Gaps = 10/131 (7%)
Query: 2 NDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNN 61
+DN + L + L NL+ LD+S N L LP + + NL L ++ N
Sbjct: 148 SDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNL----------NNLDLSGNK 197
Query: 62 LTRLSGDISLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLRTLPYELGKLFQI 121
++ L +I LL L LD+SNN + L S + +L L L L+NN L LP +G L +
Sbjct: 198 ISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNL 257
Query: 122 QILGLHGNPLS 132
+ L L N +S
Sbjct: 258 ETLDLSNNQIS 268
Score = 48.4 bits (115), Expect = 2e-07
Identities = 43/142 (30%), Positives = 68/142 (47%), Gaps = 9/142 (6%)
Query: 2 NDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNN 61
N N L ++ L NL +LD+ NN + +P IG +K+ +L L ++DN
Sbjct: 101 NLNRLRSNISELLELTNLTSLDLDNNNITDIPPLIGLLKS---------NLKELDLSDNK 151
Query: 62 LTRLSGDISLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLRTLPYELGKLFQI 121
+ L + L NL+ LD+S N L LP + +L L L L+ N + LP E+ L +
Sbjct: 152 IESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSAL 211
Query: 122 QILGLHGNPLSKDYMKIYNEPN 143
+ L L N + + + N N
Sbjct: 212 EELDLSNNSIIELLSSLSNLKN 233
Score = 47.7 bits (113), Expect = 4e-07
Identities = 49/132 (37%), Positives = 71/132 (53%), Gaps = 11/132 (8%)
Query: 1 MNDNNLTRLSGDISLL-INLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMND 59
+++NN+T + I LL NL+ LD+S+NK+ LPS + + NL L ++
Sbjct: 123 LDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKN----------LDLSF 172
Query: 60 NNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLRTLPYELGKLF 119
N+L+ L +S L NL LD+S NK+ LP EI L L EL L+NN++ L L L
Sbjct: 173 NDLSDLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNSIIELLSSLSNLK 232
Query: 120 QIQILGLHGNPL 131
+ L L N L
Sbjct: 233 NLSGLELSNNKL 244
>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional.
Length = 623
Score = 42.9 bits (101), Expect = 2e-05
Identities = 25/70 (35%), Positives = 44/70 (62%), Gaps = 2/70 (2%)
Query: 65 LSGDISLLINLRTLDISNNKLR-YLPSEIGDLIYLRELCLNNNNLR-TLPYELGKLFQIQ 122
+ DIS L +L+++++S N +R +P +G + L L L+ N+ ++P LG+L ++
Sbjct: 434 IPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLR 493
Query: 123 ILGLHGNPLS 132
IL L+GN LS
Sbjct: 494 ILNLNGNSLS 503
Score = 31.3 bits (71), Expect = 0.21
Identities = 30/109 (27%), Positives = 45/109 (41%), Gaps = 32/109 (29%)
Query: 9 LSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTRLSGD 68
+ DIS L +L+++++S N +R N+ P L T L L ++ N +G
Sbjct: 434 IPNDISKLRHLQSINLSGNSIR---------GNIPPSLGSITSLEVLDLSYN---SFNGS 481
Query: 69 ISLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLR-TLPYELG 116
I P +G L LR L LN N+L +P LG
Sbjct: 482 I-------------------PESLGQLTSLRILNLNGNSLSGRVPAALG 511
>gnl|CDD|185285 PRK15387, PRK15387, E3 ubiquitin-protein ligase SspH2; Provisional.
Length = 788
Score = 40.9 bits (95), Expect = 1e-04
Identities = 42/117 (35%), Positives = 57/117 (48%), Gaps = 16/117 (13%)
Query: 3 DNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTA-------L 55
DNNLT L +L LRTL++S N+L LP + LS THL A L
Sbjct: 231 DNNLTSLP---ALPPELRTLEVSGNQLTSLPVLPPGLLELSIFSNPLTHLPALPSGLCKL 287
Query: 56 YMNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLRTLP 112
++ N LT L L L+ L +S+N+L LP+ +L +L NN L +LP
Sbjct: 288 WIFGNQLTSLP---VLPPGLQELSVSDNQLASLPALPSELC---KLWAYNNQLTSLP 338
Score = 37.1 bits (85), Expect = 0.002
Identities = 45/156 (28%), Positives = 69/156 (44%), Gaps = 36/156 (23%)
Query: 3 DNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNL 62
+N LT L +L L+ L +S+N+L LP+ L +L++ L+ +N L
Sbjct: 331 NNQLTSLP---TLPSGLQELSVSDNQLASLPT-------LPSELYK------LWAYNNRL 374
Query: 63 TRLSGDISLLINLRTLDISNNKLR---YLPSEIGDLIY--------------LRELCLNN 105
T L +L L+ L +S N+L LPSE+ +L+ L L +
Sbjct: 375 TSLP---ALPSGLKELIVSGNRLTSLPVLPSELKELMVSGNRLTSLPMLPSGLLSLSVYR 431
Query: 106 NNLRTLPYELGKLFQIQILGLHGNPLSKDYMKIYNE 141
N L LP L L + L GNPLS+ ++ E
Sbjct: 432 NQLTRLPESLIHLSSETTVNLEGNPLSERTLQALRE 467
Score = 37.1 bits (85), Expect = 0.003
Identities = 29/75 (38%), Positives = 40/75 (53%), Gaps = 6/75 (8%)
Query: 51 HLTALYMNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLRT 110
H+T L + DNNLT L +L LRTL++S N+L LP L+ EL + +N L
Sbjct: 223 HITTLVIPDNNLTSLP---ALPPELRTLEVSGNQLTSLPVLPPGLL---ELSIFSNPLTH 276
Query: 111 LPYELGKLFQIQILG 125
LP L ++ I G
Sbjct: 277 LPALPSGLCKLWIFG 291
>gnl|CDD|185268 PRK15370, PRK15370, E3 ubiquitin-protein ligase SlrP; Provisional.
Length = 754
Score = 40.8 bits (95), Expect = 1e-04
Identities = 38/129 (29%), Positives = 62/129 (48%), Gaps = 21/129 (16%)
Query: 4 NNLTRLSGDI--------SLLINLRTLDISNNKLRYLPSEI-GAVKNLSPDLWQFTHLTA 54
NN T L I + + TL + NN+L+ LP + G +K L + Q T + A
Sbjct: 178 NNKTELRLKILGLTTIPACIPEQITTLILDNNELKSLPENLQGNIKTLYANSNQLTSIPA 237
Query: 55 --------LYMNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNN 106
+ ++ N +T L L L++LD+ +NK+ LP + + LR L + +N
Sbjct: 238 TLPDTIQEMELSINRITELPE--RLPSALQSLDLFHNKISCLPENLPE--ELRYLSVYDN 293
Query: 107 NLRTLPYEL 115
++RTLP L
Sbjct: 294 SIRTLPAHL 302
Score = 36.2 bits (83), Expect = 0.004
Identities = 34/112 (30%), Positives = 50/112 (44%), Gaps = 13/112 (11%)
Query: 19 LRTLDISNNKLRYLPSEIGA------VKNLSPDLWQFT---HLTALYMNDNNLTRLSGDI 69
LR L + +N +R LP+ + + V++ S T L L +N LT L
Sbjct: 285 LRYLSVYDNSIRTLPAHLPSGITHLNVQSNSLTALPETLPPGLKTLEAGENALTSLPA-- 342
Query: 70 SLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLRTLPYELGKLFQI 121
SL L+ LD+S N++ LP + I L ++ N L LP L QI
Sbjct: 343 SLPPELQVLDVSKNQITVLPETLPPTI--TTLDVSRNALTNLPENLPAALQI 392
Score = 34.7 bits (79), Expect = 0.016
Identities = 28/114 (24%), Positives = 52/114 (45%), Gaps = 18/114 (15%)
Query: 2 NDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNN 61
N N LT + +L ++ +++S N++ LP + + L +L + N
Sbjct: 228 NSNQLTSIPA--TLPDTIQEMELSINRITELPERLPSA------------LQSLDLFHNK 273
Query: 62 LTRLSGDISLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLRTLPYEL 115
++ L +L LR L + +N +R LP+ + I L + +N+L LP L
Sbjct: 274 ISCLPE--NLPEELRYLSVYDNSIRTLPAHLPSGIT--HLNVQSNSLTALPETL 323
Score = 32.4 bits (73), Expect = 0.092
Identities = 22/74 (29%), Positives = 39/74 (52%), Gaps = 4/74 (5%)
Query: 51 HLTALYMNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLRT 110
+T L +++N L L + L N++TL ++N+L +P+ + D I +E+ L+ N +
Sbjct: 200 QITTLILDNNELKSLPEN--LQGNIKTLYANSNQLTSIPATLPDTI--QEMELSINRITE 255
Query: 111 LPYELGKLFQIQIL 124
LP L Q L
Sbjct: 256 LPERLPSALQSLDL 269
Score = 30.4 bits (68), Expect = 0.35
Identities = 28/91 (30%), Positives = 41/91 (45%), Gaps = 16/91 (17%)
Query: 2 NDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNN 61
+N LT L SL L+ LD+S N++ LP + L P +T L ++ N
Sbjct: 333 GENALTSLPA--SLPPELQVLDVSKNQITVLP------ETLPPT------ITTLDVSRNA 378
Query: 62 LTRLSGDISLLINLRTLDISNNKLRYLPSEI 92
LT L + L L+ + S N L LP +
Sbjct: 379 LTNLPEN--LPAALQIMQASRNNLVRLPESL 407
Score = 28.5 bits (63), Expect = 1.5
Identities = 35/113 (30%), Positives = 52/113 (46%), Gaps = 18/113 (15%)
Query: 3 DNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNL 62
N+LT L +L L+TL+ N L LP+ +L P+L L ++ N +
Sbjct: 313 SNSLTALPE--TLPPGLKTLEAGENALTSLPA------SLPPEL------QVLDVSKNQI 358
Query: 63 TRLSGDISLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLRTLPYEL 115
T L +L + TLD+S N L LP + L+ + + NNL LP L
Sbjct: 359 TVLPE--TLPPTITTLDVSRNALTNLPENLP--AALQIMQASRNNLVRLPESL 407
>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein
kinase; Provisional.
Length = 968
Score = 40.2 bits (94), Expect = 2e-04
Identities = 44/138 (31%), Positives = 73/138 (52%), Gaps = 19/138 (13%)
Query: 1 MNDNNLTRLSGDIS--LLINLRTLDISNNKLR-YLPSEIGAVKNLSPDLWQFTHLTALYM 57
+++NN T G I + NL TLD+SNN L +P++IG+ F+ L L +
Sbjct: 125 LSNNNFT---GSIPRGSIPNLETLDLSNNMLSGEIPNDIGS----------FSSLKVLDL 171
Query: 58 NDNNLT-RLSGDISLLINLRTLDISNNKLR-YLPSEIGDLIYLRELCLNNNNLR-TLPYE 114
N L ++ ++ L +L L +++N+L +P E+G + L+ + L NNL +PYE
Sbjct: 172 GGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYE 231
Query: 115 LGKLFQIQILGLHGNPLS 132
+G L + L L N L+
Sbjct: 232 IGGLTSLNHLDLVYNNLT 249
Score = 32.9 bits (75), Expect = 0.061
Identities = 45/137 (32%), Positives = 64/137 (46%), Gaps = 21/137 (15%)
Query: 4 NNLT-RLSGDISLLINLRTLD-ISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNN 61
NNL+ + +I L +L LD + NN +PS +G +KNL LY N
Sbjct: 222 NNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNL--------QYLFLYQN--- 270
Query: 62 LTRLSGDISL----LINLRTLDISNNKLR-YLPSEIGDLIYLRELCLNNNNLR-TLPYEL 115
+LSG I L L +LD+S+N L +P + L L L L +NN +P L
Sbjct: 271 --KLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVAL 328
Query: 116 GKLFQIQILGLHGNPLS 132
L ++Q+L L N S
Sbjct: 329 TSLPRLQVLQLWSNKFS 345
>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease
inhibitor (RI)-like subfamily. LRRs are 20-29 residue
sequence motifs present in many proteins that
participate in protein-protein interactions and have
different functions and cellular locations. LRRs
correspond to structural units consisting of a beta
strand (LxxLxLxxN/CxL conserved pattern) and an alpha
helix. This alignment contains 12 strands corresponding
to 11 full repeats, consistent with the extent observed
in the subfamily acting as Ran GTPase Activating
Proteins (RanGAP1).
Length = 319
Score = 38.1 bits (89), Expect = 9e-04
Identities = 24/118 (20%), Positives = 51/118 (43%), Gaps = 16/118 (13%)
Query: 2 NDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNN 61
+ L+ + +L+ L+++NN + ++ L+ L +L L +N+N
Sbjct: 150 EGASCEALAKALRANRDLKELNLANNGIGD-----AGIRALAEGLKANCNLEVLDLNNNG 204
Query: 62 LTR-----LSGDISLLINLRTLDISNNKLR------YLPSEIGDLIYLRELCLNNNNL 108
LT L+ ++ L +L L++ +N L + + I L L L+ N++
Sbjct: 205 LTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDI 262
>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat.
Length = 60
Score = 33.3 bits (77), Expect = 0.005
Identities = 29/69 (42%), Positives = 41/69 (59%), Gaps = 10/69 (14%)
Query: 18 NLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTRLS-GDISLLINLR 76
NL++LD+SNN+L +P GA K L +L L ++ NNLT +S S L +LR
Sbjct: 1 NLKSLDLSNNRLTVIPD--GAFKGLP-------NLKVLDLSGNNLTSISPEAFSGLPSLR 51
Query: 77 TLDISNNKL 85
+LD+S N L
Sbjct: 52 SLDLSGNNL 60
Score = 31.4 bits (72), Expect = 0.028
Identities = 23/60 (38%), Positives = 34/60 (56%), Gaps = 2/60 (3%)
Query: 74 NLRTLDISNNKLRYLPSEI-GDLIYLRELCLNNNNLRTLPYE-LGKLFQIQILGLHGNPL 131
NL++LD+SNN+L +P L L+ L L+ NNL ++ E L ++ L L GN L
Sbjct: 1 NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60
Score = 29.4 bits (67), Expect = 0.15
Identities = 22/60 (36%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Query: 51 HLTALYMNDNNLTRLSGDI-SLLINLRTLDISNNKLRYLPSE-IGDLIYLRELCLNNNNL 108
+L +L +++N LT + L NL+ LD+S N L + E L LR L L+ NNL
Sbjct: 1 NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60
Score = 25.2 bits (56), Expect = 5.3
Identities = 17/63 (26%), Positives = 27/63 (42%), Gaps = 10/63 (15%)
Query: 1 MNDNNLTRLSGDI-SLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMND 59
+++N LT + L NL+ LD+S N L + E L +L ++
Sbjct: 7 LSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEA---------FSGLPSLRSLDLSG 57
Query: 60 NNL 62
NNL
Sbjct: 58 NNL 60
>gnl|CDD|205079 pfam12799, LRR_4, Leucine Rich repeats (2 copies). Leucine rich
repeats are short sequence motifs present in a number of
proteins with diverse functions and cellular locations.
These repeats are usually involved in protein-protein
interactions. Each Leucine Rich Repeat is composed of a
beta-alpha unit. These units form elongated non-globular
structures. Leucine Rich Repeats are often flanked by
cysteine rich domains.
Length = 43
Score = 29.8 bits (68), Expect = 0.081
Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Query: 74 NLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLRTLP 112
NL TLD+SNN++ LP + +L L L L+ N + L
Sbjct: 2 NLETLDLSNNQITDLP-PLSNLPNLETLDLSGNKITDLS 39
Score = 29.4 bits (67), Expect = 0.11
Identities = 17/41 (41%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Query: 50 THLTALYMNDNNLTRLSGDISLLINLRTLDISNNKLRYLPS 90
T+L L +++N +T L +S L NL TLD+S NK+ L
Sbjct: 1 TNLETLDLSNNQITDLPP-LSNLPNLETLDLSGNKITDLSP 40
Score = 25.5 bits (57), Expect = 2.4
Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 11/50 (22%)
Query: 18 NLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTRLSG 67
NL TLD+SNN++ LP L +L L ++ N +T LS
Sbjct: 2 NLETLDLSNNQITDLPP-----------LSNLPNLETLDLSGNKITDLSP 40
Score = 24.0 bits (53), Expect = 8.5
Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Query: 1 MNDNNLTRLSGDISLLINLRTLDISNNKLRYLPS 34
+++N +T L +S L NL TLD+S NK+ L
Sbjct: 8 LSNNQITDLPP-LSNLPNLETLDLSGNKITDLSP 40
>gnl|CDD|200533 cd11272, Sema_plexin_A2, The Sema domain, a protein interacting
module, of Plexin A2. Plexin A2 serves as a receptor
for class 6 semaphorins. Interactions between Plexin A2,
A4 and semaphorins 6A and 6B control the
lamina-restricted projection of hippocampal mossy
fibers. Sema6B also repels the growth of mossy fibers in
a Plexin A4 dependent manner. Plexin A2 does not
suppress Sema6B function. In addition, studies have
shown that Plexin A2 may be related to anxiety and other
psychiatric disorders. The Sema domain is located at the
N-terminus and contains four disulfide bonds formed by
eight conserved cysteine residues. It serves as a
ligand-recognition and -binding module.
Length = 515
Score = 30.7 bits (69), Expect = 0.31
Identities = 23/80 (28%), Positives = 38/80 (47%), Gaps = 7/80 (8%)
Query: 47 WQFTHLT------ALYMND-NNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGDLIYLR 99
W F HLT A+Y+ N + +LSG++++L+ +T +NK Y P + +
Sbjct: 11 WTFNHLTVHQSTGAVYVGAINRVYKLSGNLTILVAHKTGPEEDNKSCYPPLIVQPCSEVL 70
Query: 100 ELCLNNNNLRTLPYELGKLF 119
L N N L + Y +L
Sbjct: 71 TLTNNVNKLLIIDYSENRLL 90
>gnl|CDD|197688 smart00370, LRR, Leucine-rich repeats, outliers.
Length = 24
Score = 26.5 bits (60), Expect = 0.71
Identities = 12/21 (57%), Positives = 14/21 (66%)
Query: 16 LINLRTLDISNNKLRYLPSEI 36
L NLR LD+SNN+L LP
Sbjct: 1 LPNLRELDLSNNQLSSLPPGA 21
Score = 26.5 bits (60), Expect = 0.71
Identities = 12/21 (57%), Positives = 14/21 (66%)
Query: 72 LINLRTLDISNNKLRYLPSEI 92
L NLR LD+SNN+L LP
Sbjct: 1 LPNLRELDLSNNQLSSLPPGA 21
>gnl|CDD|197687 smart00369, LRR_TYP, Leucine-rich repeats, typical (most
populated) subfamily.
Length = 24
Score = 26.5 bits (60), Expect = 0.71
Identities = 12/21 (57%), Positives = 14/21 (66%)
Query: 16 LINLRTLDISNNKLRYLPSEI 36
L NLR LD+SNN+L LP
Sbjct: 1 LPNLRELDLSNNQLSSLPPGA 21
Score = 26.5 bits (60), Expect = 0.71
Identities = 12/21 (57%), Positives = 14/21 (66%)
Query: 72 LINLRTLDISNNKLRYLPSEI 92
L NLR LD+SNN+L LP
Sbjct: 1 LPNLRELDLSNNQLSSLPPGA 21
>gnl|CDD|218686 pfam05677, DUF818, Chlamydia CHLPS protein (DUF818). This family
consists of several Chlamydia CHLPS proteins, the
function of which are unknown.
Length = 364
Score = 29.4 bits (66), Expect = 0.87
Identities = 19/72 (26%), Positives = 29/72 (40%), Gaps = 11/72 (15%)
Query: 87 YLPSEIGDLIYLRELCLNNNNLRT--LPYELGKLFQIQILGLHGNPLSKDYMKIYNEPNG 144
S IGD ++ E CL + L +P K+ + L LH +PL
Sbjct: 301 SRRSLIGDGLFAPENCLAHPFLDPPNVPKSGKKIPIGERLLLHIDPLD---------SKT 351
Query: 145 TQKLLSYLLDSL 156
Q L +++L L
Sbjct: 352 IQALATHILKHL 363
>gnl|CDD|201298 pfam00548, Peptidase_C3, 3C cysteine protease (picornain 3C).
Picornaviral proteins are expressed as a single
polyprotein which is cleaved by the viral 3C cysteine
protease.
Length = 170
Score = 28.4 bits (64), Expect = 1.3
Identities = 22/101 (21%), Positives = 36/101 (35%), Gaps = 15/101 (14%)
Query: 53 TALYMNDNNLTRL-------SGDISLLINLRTLDISNNKLR----YLPSEIGDLIYLREL 101
+ ++ + L ++L + L L N K R YLP +I L
Sbjct: 47 DTIVLDGKLVKVLDAYELVDRFGVNLELTLVKLK-RNEKFRDIRKYLPEDIKK-GNDAVL 104
Query: 102 CLNNNNLRTLPYELGKLFQIQILGLHGNPLSKDYMKIYNEP 142
+NN+ L +G + + L G P + YN P
Sbjct: 105 LVNNSEFGRLIVPVGFVTYYGFINLSGTPTHRTLS--YNAP 143
>gnl|CDD|181081 PRK07681, PRK07681, aspartate aminotransferase; Provisional.
Length = 399
Score = 27.8 bits (62), Expect = 2.7
Identities = 10/35 (28%), Positives = 18/35 (51%), Gaps = 4/35 (11%)
Query: 107 NLRTLPYELGKLFQIQILGLHGNPL----SKDYMK 137
+L +P E+ ++ IL GNP+ +D+ K
Sbjct: 155 DLELIPEEIADKAKMMILNFPGNPVPAMAHEDFFK 189
>gnl|CDD|146925 pfam04529, Herpes_U59, Herpesvirus U59 protein. The proteins in
this family have no known function. Cytomegalovirus UL88
is also a member of this family.
Length = 365
Score = 27.0 bits (60), Expect = 4.5
Identities = 14/53 (26%), Positives = 23/53 (43%), Gaps = 11/53 (20%)
Query: 54 ALYMNDNNLTR---LSGDISLLINLRTLDISNNKLRYLPSEIGDLIYLRELCL 103
AL ++D + + D+S L+ K+R P D ++ ELCL
Sbjct: 9 ALRLDDGTVREHEFYNSDLSELVRR--------KIRPPPDADEDTVFASELCL 53
>gnl|CDD|201305 pfam00560, LRR_1, Leucine Rich Repeat. CAUTION: This Pfam may
not find all Leucine Rich Repeats in a protein. Leucine
Rich Repeats are short sequence motifs present in a
number of proteins with diverse functions and cellular
locations. These repeats are usually involved in
protein-protein interactions. Each Leucine Rich Repeat
is composed of a beta-alpha unit. These units form
elongated non-globular structures. Leucine Rich Repeats
are often flanked by cysteine rich domains.
Length = 22
Score = 24.5 bits (54), Expect = 4.9
Identities = 12/22 (54%), Positives = 15/22 (68%)
Query: 74 NLRTLDISNNKLRYLPSEIGDL 95
NL LD+SNN L LP +G+L
Sbjct: 1 NLEELDLSNNNLSSLPPSLGNL 22
>gnl|CDD|240630 cd05305, L-AlaDH, Alanine dehydrogenase NAD-binding and catalytic
domains. Alanine dehydrogenase (L-AlaDH) catalyzes the
NAD-dependent conversion of pyruvate to L-alanine via
reductive amination. Like formate dehydrogenase and
related enzymes, L-AlaDH is comprised of 2 domains
connected by a long alpha helical stretch, each
resembling a Rossmann fold NAD-binding domain. The
NAD-binding domain is inserted within the linear
sequence of the more divergent catalytic domain. Ligand
binding and active site residues are found in the cleft
between the subdomains. L-AlaDH is typically hexameric
and is critical in carbon and nitrogen metabolism in
micro-organisms.
Length = 359
Score = 26.6 bits (60), Expect = 5.9
Identities = 16/52 (30%), Positives = 21/52 (40%), Gaps = 12/52 (23%)
Query: 22 LDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTRLSGDISLLI 73
LDI+ +LRYL G +T LY N NL + L+I
Sbjct: 197 LDINLERLRYLDDIFGG------------RVTTLYSNPANLEEALKEADLVI 236
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.318 0.139 0.397
Gapped
Lambda K H
0.267 0.0925 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 7,966,764
Number of extensions: 722436
Number of successful extensions: 592
Number of sequences better than 10.0: 1
Number of HSP's gapped: 540
Number of HSP's successfully gapped: 65
Length of query: 157
Length of database: 10,937,602
Length adjustment: 89
Effective length of query: 68
Effective length of database: 6,990,096
Effective search space: 475326528
Effective search space used: 475326528
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (24.6 bits)