RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy3049
(157 letters)
>3jqh_A C-type lectin domain family 4 member M; DC-signr, four-helix
bundle, oligomerization domain, alternative splicing,
calcium, cell membrane; 2.20A {Homo sapiens}
Length = 167
Score = 104 bits (262), Expect = 2e-29
Identities = 27/145 (18%), Positives = 44/145 (30%), Gaps = 13/145 (8%)
Query: 1 MNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLS-------------PDLW 47
LTRL + L L +L L + +G + S +
Sbjct: 11 EIYQELTRLKAAVGELPEKSKLQEIYQELTRLKAAVGELPEKSKLQEIYQELTRLKAAVG 70
Query: 48 QFTHLTALYMNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNN 107
+ + L LTRL + L L +L L + +G+L +L
Sbjct: 71 ELPEKSKLQEIYQELTRLKAAVGELPEKSKLQEIYQELTELKAAVGELPEKSKLQEIYQE 130
Query: 108 LRTLPYELGKLFQIQILGLHGNPLS 132
L L +G+L L+
Sbjct: 131 LTQLKAAVGELPDQSKQQQIYQELT 155
Score = 95.2 bits (238), Expect = 9e-26
Identities = 23/131 (17%), Positives = 38/131 (29%), Gaps = 13/131 (9%)
Query: 1 MNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLS-------------PDLW 47
LTRL + L L +L L + +G + S +
Sbjct: 34 EIYQELTRLKAAVGELPEKSKLQEIYQELTRLKAAVGELPEKSKLQEIYQELTRLKAAVG 93
Query: 48 QFTHLTALYMNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNN 107
+ + L LT L + L L +L L + +G+L +
Sbjct: 94 ELPEKSKLQEIYQELTELKAAVGELPEKSKLQEIYQELTQLKAAVGELPDQSKQQQIYQE 153
Query: 108 LRTLPYELGKL 118
L L +L
Sbjct: 154 LTDLKTAFERL 164
Score = 89.8 bits (224), Expect = 1e-23
Identities = 23/117 (19%), Positives = 38/117 (32%), Gaps = 10/117 (8%)
Query: 16 LINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTRLSGDISLLINL 75
L L +L L + +G + + L LTRL + L
Sbjct: 3 LPEKSKLQEIYQELTRLKAAVG----------ELPEKSKLQEIYQELTRLKAAVGELPEK 52
Query: 76 RTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLRTLPYELGKLFQIQILGLHGNPLS 132
L +L L + +G+L +L L L +G+L + L L+
Sbjct: 53 SKLQEIYQELTRLKAAVGELPEKSKLQEIYQELTRLKAAVGELPEKSKLQEIYQELT 109
Score = 74.8 bits (185), Expect = 6e-18
Identities = 18/85 (21%), Positives = 30/85 (35%)
Query: 48 QFTHLTALYMNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNN 107
+ + L LTRL + L L +L L + +G+L +L
Sbjct: 2 ELPEKSKLQEIYQELTRLKAAVGELPEKSKLQEIYQELTRLKAAVGELPEKSKLQEIYQE 61
Query: 108 LRTLPYELGKLFQIQILGLHGNPLS 132
L L +G+L + L L+
Sbjct: 62 LTRLKAAVGELPEKSKLQEIYQELT 86
Score = 48.2 bits (116), Expect = 7e-08
Identities = 14/86 (16%), Positives = 23/86 (26%), Gaps = 13/86 (15%)
Query: 2 NDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLS-------------PDLWQ 48
LTRL + L L +L L + +G + S + +
Sbjct: 81 IYQELTRLKAAVGELPEKSKLQEIYQELTELKAAVGELPEKSKLQEIYQELTQLKAAVGE 140
Query: 49 FTHLTALYMNDNNLTRLSGDISLLIN 74
+ LT L L +
Sbjct: 141 LPDQSKQQQIYQELTDLKTAFERLGH 166
Score = 35.9 bits (84), Expect = 0.002
Identities = 9/40 (22%), Positives = 15/40 (37%)
Query: 93 GDLIYLRELCLNNNNLRTLPYELGKLFQIQILGLHGNPLS 132
G+L +L L L +G+L + L L+
Sbjct: 1 GELPEKSKLQEIYQELTRLKAAVGELPEKSKLQEIYQELT 40
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest
center for structu genomics, MCSG, LRR, N- and
C-terminal helices; 2.00A {Xanthomonas campestris PV}
Length = 328
Score = 89.6 bits (223), Expect = 2e-22
Identities = 37/131 (28%), Positives = 53/131 (40%), Gaps = 3/131 (2%)
Query: 1 MNDNNLTRLSGDISLLINLRTLDIS-NNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMND 59
+ N L L I+ L LR L I +L LP + + S + +L +L +
Sbjct: 134 LARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTD-ASGEHQGLVNLQSLRLEW 192
Query: 60 NNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGDLIYLRELCL-NNNNLRTLPYELGKL 118
+ L I+ L NL++L I N+ L L I L L EL L LR P G
Sbjct: 193 TGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGR 252
Query: 119 FQIQILGLHGN 129
++ L L
Sbjct: 253 APLKRLILKDC 263
Score = 82.7 bits (205), Expect = 9e-20
Identities = 35/142 (24%), Positives = 54/142 (38%), Gaps = 20/142 (14%)
Query: 1 MNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDN 60
+ L + L +L+ + I L LP + QF L L + N
Sbjct: 88 LRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQ----------QFAGLETLTLARN 137
Query: 61 NLTRLSGDISLLINLRTLDIS-NNKLRYLPSEIG---------DLIYLRELCLNNNNLRT 110
L L I+ L LR L I +L LP + L+ L+ L L +R+
Sbjct: 138 PLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRS 197
Query: 111 LPYELGKLFQIQILGLHGNPLS 132
LP + L ++ L + +PLS
Sbjct: 198 LPASIANLQNLKSLKIRNSPLS 219
Score = 81.5 bits (202), Expect = 2e-19
Identities = 30/136 (22%), Positives = 50/136 (36%), Gaps = 13/136 (9%)
Query: 1 MNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDN 60
+ + L I+ L NL++L I N+ L L I L L +
Sbjct: 190 LEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIH----------HLPKLEELDLRGC 239
Query: 61 N-LTRLSGDISLLINLRTLDISN-NKLRYLPSEIGDLIYLRELCL-NNNNLRTLPYELGK 117
L L+ L + + + L LP +I L L +L L NL LP + +
Sbjct: 240 TALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQ 299
Query: 118 LFQIQILGLHGNPLSK 133
L I+ + + ++
Sbjct: 300 LPANCIILVPPHLQAQ 315
Score = 81.1 bits (201), Expect = 3e-19
Identities = 36/125 (28%), Positives = 58/125 (46%), Gaps = 12/125 (9%)
Query: 8 RLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTRLSG 67
SG+ L+NL++L + +R LP+ I +L +L + ++ L+ L
Sbjct: 174 DASGEHQGLVNLQSLRLEWTGIRSLPASIA----------NLQNLKSLKIRNSPLSALGP 223
Query: 68 DISLLINLRTLDIS-NNKLRYLPSEIGDLIYLRELCL-NNNNLRTLPYELGKLFQIQILG 125
I L L LD+ LR P G L+ L L + +NL TLP ++ +L Q++ L
Sbjct: 224 AIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLD 283
Query: 126 LHGNP 130
L G
Sbjct: 284 LRGCV 288
Score = 76.9 bits (190), Expect = 1e-17
Identities = 24/129 (18%), Positives = 41/129 (31%), Gaps = 8/129 (6%)
Query: 2 NDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNN 61
D N + + N + + L+ + AL +
Sbjct: 41 ADRNRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPG--------RVALELRSVP 92
Query: 62 LTRLSGDISLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLRTLPYELGKLFQI 121
L + L +L+ + I L LP + L L L N LR LP + L ++
Sbjct: 93 LPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRL 152
Query: 122 QILGLHGNP 130
+ L + P
Sbjct: 153 RELSIRACP 161
Score = 67.7 bits (166), Expect = 2e-14
Identities = 20/130 (15%), Positives = 38/130 (29%), Gaps = 13/130 (10%)
Query: 16 LINLRTLDISN-NKLRYLPSEIGAVKNLS-------PDLWQFTHLTALYMNDNNLTRLSG 67
L LR + + W+ + + L
Sbjct: 11 SSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKA 70
Query: 68 DISLL-----INLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLRTLPYELGKLFQIQ 122
LL L++ + L P + L +L+ + ++ L LP + + ++
Sbjct: 71 TADLLEDATQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLE 130
Query: 123 ILGLHGNPLS 132
L L NPL
Sbjct: 131 TLTLARNPLR 140
Score = 28.4 bits (64), Expect = 1.1
Identities = 8/63 (12%), Positives = 12/63 (19%), Gaps = 4/63 (6%)
Query: 72 LINLRTLDISN-NKLRYLPSEIGDLIYLRELCLNNNNLRTLPYELGKLFQIQILGLHGNP 130
L LR + + + N + QI G
Sbjct: 11 SSGRENLYFQGSTALRPYHDVLSQW---QRHYNADRNRWHSAWRQANSNNPQIETRTGRA 67
Query: 131 LSK 133
L
Sbjct: 68 LKA 70
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain,
protein binding, extra protein, structural genomics;
2.80A {Bacteroides thetaiotaomicron}
Length = 876
Score = 83.8 bits (207), Expect = 1e-19
Identities = 35/134 (26%), Positives = 59/134 (44%), Gaps = 4/134 (2%)
Query: 2 NDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNN 61
N N+T+L + L L++L+I+ N+ L+ D + YM NN
Sbjct: 500 NCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNN 559
Query: 62 LTRL--SGDISLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLRTLPYELGKLF 119
L S + ++ L LD +NK+R+L G + L +L L+ N + +P +
Sbjct: 560 LEEFPASASLQKMVKLGLLDCVHNKVRHLE-AFGTNVKLTDLKLDYNQIEEIPEDFCAFT 618
Query: 120 -QIQILGLHGNPLS 132
Q++ LG N L
Sbjct: 619 DQVEGLGFSHNKLK 632
Score = 77.2 bits (190), Expect = 2e-17
Identities = 29/143 (20%), Positives = 54/143 (37%), Gaps = 12/143 (8%)
Query: 1 MNDNNLTRL-SGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMND 59
++ N + + + + + T+ +SNN + +P K + LT + +
Sbjct: 680 LSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSL--KPKDGNYKNTYLLTTIDLRF 737
Query: 60 NNLTRLSGDISL--LINLRTLDISNNKLRYLPSEIGDLIYLRELCL-------NNNNLRT 110
N LT LS D L L +D+S N P++ + L+ + N LR
Sbjct: 738 NKLTSLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQ 797
Query: 111 LPYELGKLFQIQILGLHGNPLSK 133
P + + L + N + K
Sbjct: 798 WPTGITTCPSLIQLQIGSNDIRK 820
Score = 70.7 bits (173), Expect = 4e-15
Identities = 29/137 (21%), Positives = 52/137 (37%), Gaps = 17/137 (12%)
Query: 3 DNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNL 62
+N+L G+ L T+D+ NKL L + +L+ + ++ N
Sbjct: 714 ENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFR--------ATTLPYLSNMDVSYNCF 765
Query: 63 TRLSGDISLLINLRTLDIS-------NNKLRYLPSEIGDLIYLRELCLNNNNLRTLPYEL 115
+ L+ I N LR P+ I L +L + +N++R + +L
Sbjct: 766 SSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRKVDEKL 825
Query: 116 GKLFQIQILGLHGNPLS 132
Q+ IL + NP
Sbjct: 826 TP--QLYILDIADNPNI 840
Score = 69.1 bits (169), Expect = 1e-14
Identities = 27/153 (17%), Positives = 55/153 (35%), Gaps = 23/153 (15%)
Query: 4 NNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAV----------KNLSPDLWQFTHLT 53
N +T +S I L L+ + +N+ Y + +N LT
Sbjct: 435 NRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLT 494
Query: 54 ALYMNDNN-LTRLSGDISLLINLRTLDISNNKLRY----------LPSEIGDLIYLRELC 102
+ + + +T+L + L L++L+I+ N+ L + ++
Sbjct: 495 DVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFY 554
Query: 103 LNNNNLRTLPYE--LGKLFQIQILGLHGNPLSK 133
+ NNL P L K+ ++ +L N +
Sbjct: 555 MGYNNLEEFPASASLQKMVKLGLLDCVHNKVRH 587
Score = 69.1 bits (169), Expect = 1e-14
Identities = 23/144 (15%), Positives = 54/144 (37%), Gaps = 17/144 (11%)
Query: 2 NDNNLTRLSGDISL--LINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMND 59
+ N L + + + + ++D S NK+ I S D ++ + + + ++
Sbjct: 627 SHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISC----SMDDYKGINASTVTLSY 682
Query: 60 NNLTRL-SGDISLLINLRTLDISNNKLRYLPSE--------IGDLIYLRELCLNNNNLRT 110
N + + + + + T+ +SNN + +P + L + L N L +
Sbjct: 683 NEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTS 742
Query: 111 LPYEL--GKLFQIQILGLHGNPLS 132
L + L + + + N S
Sbjct: 743 LSDDFRATTLPYLSNMDVSYNCFS 766
Score = 68.4 bits (167), Expect = 2e-14
Identities = 21/145 (14%), Positives = 46/145 (31%), Gaps = 22/145 (15%)
Query: 1 MNDNNLT----------RLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFT 50
+ N RL+ D ++ + N L P+ L +
Sbjct: 522 IACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPAS--------ASLQKMV 573
Query: 51 HLTALYMNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIG-DLIYLRELCLNNNNLR 109
L L N + L + L L + N++ +P + + L ++N L+
Sbjct: 574 KLGLLDCVHNKVRHLE-AFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLK 632
Query: 110 TLP--YELGKLFQIQILGLHGNPLS 132
+P + ++ + + N +
Sbjct: 633 YIPNIFNAKSVYVMGSVDFSYNKIG 657
Score = 64.1 bits (156), Expect = 6e-13
Identities = 26/149 (17%), Positives = 59/149 (39%), Gaps = 24/149 (16%)
Query: 1 MNDNNLTRLSGDI-SLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMND 59
++ N + + D + + L S+NKL+Y+P+ + ++ +
Sbjct: 602 LDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFN--------AKSVYVMGSVDFSY 653
Query: 60 NNLTRLSGDISL------LINLRTLDISNNKLRYLPSEI-GDLIYLRELCLNNNNLRTLP 112
N + +IS IN T+ +S N+++ P+E+ + + L+NN + ++P
Sbjct: 654 NKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIP 713
Query: 113 --------YELGKLFQIQILGLHGNPLSK 133
+ + + L N L+
Sbjct: 714 ENSLKPKDGNYKNTYLLTTIDLRFNKLTS 742
Score = 59.5 bits (144), Expect = 3e-11
Identities = 26/134 (19%), Positives = 46/134 (34%), Gaps = 10/134 (7%)
Query: 3 DNNLTRLSGDISL--LINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDN 60
N LT LS D L L +D+S N P++ L F N
Sbjct: 737 FNKLTSLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLK----AFGIRHQRDAEGN 792
Query: 61 NLTR-LSGDISLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLRTLPY-ELGKL 118
+ R I+ +L L I +N +R + ++ L L + +N ++ +
Sbjct: 793 RILRQWPTGITTCPSLIQLQIGSNDIRKVDEKL--TPQLYILDIADNPNISIDVTSVCPY 850
Query: 119 FQIQILGLHGNPLS 132
+ + L +
Sbjct: 851 IEAGMYVLLYDKTQ 864
Score = 57.2 bits (138), Expect = 2e-10
Identities = 19/130 (14%), Positives = 42/130 (32%), Gaps = 14/130 (10%)
Query: 4 NNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLT 63
+ + D + + + N++ ++ I + T L +Y ++ T
Sbjct: 412 PEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQ----------RLTKLQIIYFANSPFT 461
Query: 64 RLSGDISLLINLRTLDISNNKLRYLPSEIGDLIYLRELCL-NNNNLRTLPYELGKLFQIQ 122
+ + + +L L ++ L N N+ LP L L ++Q
Sbjct: 462 YDNIAVDWEDANSDY---AKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQ 518
Query: 123 ILGLHGNPLS 132
L + N
Sbjct: 519 SLNIACNRGI 528
Score = 54.9 bits (132), Expect = 1e-09
Identities = 17/131 (12%), Positives = 44/131 (33%), Gaps = 2/131 (1%)
Query: 3 DNNLT-RLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNN 61
R+ I L L+ L + G + L+PD+ +
Sbjct: 332 GFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGD-EELTPDMSEERKHRIRMHYKKM 390
Query: 62 LTRLSGDISLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLRTLPYELGKLFQI 121
++L L+ N +++ + + + ++ N + + + +L ++
Sbjct: 391 FLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKL 450
Query: 122 QILGLHGNPLS 132
QI+ +P +
Sbjct: 451 QIIYFANSPFT 461
Score = 41.0 bits (96), Expect = 7e-05
Identities = 15/82 (18%), Positives = 25/82 (30%), Gaps = 1/82 (1%)
Query: 46 LWQFTHLTALYMNDNNLT-RLSGDISLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLN 104
L +T L + R+ I L L+ L + GD ++
Sbjct: 319 LDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEE 378
Query: 105 NNNLRTLPYELGKLFQIQILGL 126
+ + Y+ L Q L L
Sbjct: 379 RKHRIRMHYKKMFLDYDQRLNL 400
Score = 26.0 bits (57), Expect = 7.4
Identities = 8/33 (24%), Positives = 16/33 (48%), Gaps = 2/33 (6%)
Query: 1 MNDNNLTRLSGDISLLINLRTLDISNNKLRYLP 33
+ N++ ++ D L L LDI++N +
Sbjct: 813 IGSNDIRKV--DEKLTPQLYILDIADNPNISID 843
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein,
neurite growth regulation; HET: NAG BMA; 2.00A {Mus
musculus}
Length = 361
Score = 78.7 bits (194), Expect = 3e-18
Identities = 38/140 (27%), Positives = 64/140 (45%), Gaps = 17/140 (12%)
Query: 1 MNDNNLTRLSGDISL--LINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMN 58
++ NNL+RL + + L NL +L +S+N L ++ S A + +L L ++
Sbjct: 46 LSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISS--EAFVPV-------PNLRYLDLS 96
Query: 59 DNNLTRL-SGDISLLINLRTLDISNNKLRYLPSEI-GDLIYLRELCLNNNNLRTLPYE-- 114
N+L L S L L L + NN + + D+ L++L L+ N + P E
Sbjct: 97 SNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELI 156
Query: 115 --LGKLFQIQILGLHGNPLS 132
KL ++ +L L N L
Sbjct: 157 KDGNKLPKLMLLDLSSNKLK 176
Score = 73.7 bits (181), Expect = 2e-16
Identities = 36/141 (25%), Positives = 60/141 (42%), Gaps = 20/141 (14%)
Query: 1 MNDNNLTRLSGDI-SLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMND 59
++ N+L +S + + NLR LD+S+N L L + L L + +
Sbjct: 71 LSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFL---------FSDLQALEVLLLYN 121
Query: 60 NNLTRLSGDI-SLLINLRTLDISNNKLRYLPSEI----GDLIYLRELCLNNNNLRTLPYE 114
N++ + + + L+ L +S N++ P E+ L L L L++N L+ LP
Sbjct: 122 NHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLT 181
Query: 115 ----LGKLFQIQILGLHGNPL 131
L L LH NPL
Sbjct: 182 DLQKLPAW-VKNGLYLHNNPL 201
Score = 70.3 bits (172), Expect = 3e-15
Identities = 36/134 (26%), Positives = 60/134 (44%), Gaps = 13/134 (9%)
Query: 2 NDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNN 61
+ L + + LD+S+N L L +E + T+L +L ++ N+
Sbjct: 26 SKQQLPNVPQSLP--SYTALLDLSHNNLSRLRAEW--------TPTRLTNLHSLLLSHNH 75
Query: 62 LTRLSGDI-SLLINLRTLDISNNKLRYLPSEI-GDLIYLRELCLNNNNLRTLPYE-LGKL 118
L +S + + NLR LD+S+N L L + DL L L L NN++ + +
Sbjct: 76 LNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDM 135
Query: 119 FQIQILGLHGNPLS 132
Q+Q L L N +S
Sbjct: 136 AQLQKLYLSQNQIS 149
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine
rich repeat domain, type three effector, salmonella
virulence factor; 1.90A {Salmonella typhimurium}
Length = 622
Score = 78.4 bits (193), Expect = 7e-18
Identities = 41/165 (24%), Positives = 62/165 (37%), Gaps = 19/165 (11%)
Query: 1 MNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLS---------PDLWQFTH 51
++DN L L S L L NN+L LP+ +K L P L +
Sbjct: 188 VSDNQLASLPTLPS---ELYKLWAYNNRLTSLPALPSGLKELIVSGNRLTSLPVL--PSE 242
Query: 52 LTALYMNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLRTL 111
L L ++ N LT L L L +L + N+L LP + L + L N L
Sbjct: 243 LKELMVSGNRLTSLP---MLPSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPLSER 299
Query: 112 PYELGKLFQIQILGLHGNPLSKDYMKIYNEPNGTQKLLSYLLDSL 156
+ + +I + P+ + M + P T+ L D L
Sbjct: 300 TLQALR--EITSAPGYSGPIIRFDMAGASAPRETRALHLAAADWL 342
Score = 75.3 bits (185), Expect = 8e-17
Identities = 46/139 (33%), Positives = 63/139 (45%), Gaps = 19/139 (13%)
Query: 1 MNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTA------ 54
+ DNNLT L LRTL++S N+L LP + LS THL A
Sbjct: 68 IPDNNLTSLPALPP---ELRTLEVSGNQLTSLPVLPPGLLELSIFSNPLTHLPALPSGLC 124
Query: 55 -LYMNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLRTLPY 113
L++ N LT L L L+ L +S+N+L LP+ + L +L NN L +LP
Sbjct: 125 KLWIFGNQLTSLP---VLPPGLQELSVSDNQLASLPALPSE---LCKLWAYNNQLTSLPM 178
Query: 114 ELGKLFQIQILGLHGNPLS 132
L Q L + N L+
Sbjct: 179 LPSGL---QELSVSDNQLA 194
Score = 73.4 bits (180), Expect = 4e-16
Identities = 42/139 (30%), Positives = 59/139 (42%), Gaps = 23/139 (16%)
Query: 3 DNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLS---------PDLWQFTHLT 53
N LT L +L L L I N+L LP ++ LS P L + L
Sbjct: 110 SNPLTHLP---ALPSGLCKLWIFGNQLTSLPVLPPGLQELSVSDNQLASLPAL--PSELC 164
Query: 54 ALYMNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLRTLPY 113
L+ +N LT L S L+ L +S+N+L LP+ +L L NN L +LP
Sbjct: 165 KLWAYNNQLTSLPMLPS---GLQELSVSDNQLASLPTLPSELYKLWAY---NNRLTSLPA 218
Query: 114 ELGKLFQIQILGLHGNPLS 132
L + L + GN L+
Sbjct: 219 LPSGL---KELIVSGNRLT 234
Score = 72.6 bits (178), Expect = 8e-16
Identities = 41/141 (29%), Positives = 61/141 (43%), Gaps = 23/141 (16%)
Query: 1 MNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLS---------PDLWQFTH 51
+ N LT L L L+ L +S+N+L LP+ + L P L +
Sbjct: 128 IFGNQLTSLP---VLPPGLQELSVSDNQLASLPALPSELCKLWAYNNQLTSLPML--PSG 182
Query: 52 LTALYMNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLRTL 111
L L ++DN L L S L L NN+L LP+ L+EL ++ N L +L
Sbjct: 183 LQELSVSDNQLASLPTLPS---ELYKLWAYNNRLTSLPALPSG---LKELIVSGNRLTSL 236
Query: 112 PYELGKLFQIQILGLHGNPLS 132
P +L + L + GN L+
Sbjct: 237 PVLPSEL---KELMVSGNRLT 254
Score = 70.7 bits (173), Expect = 3e-15
Identities = 30/101 (29%), Positives = 41/101 (40%), Gaps = 15/101 (14%)
Query: 18 NLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTRLSGDISLLINLRT 77
L++ + L LP + H+T L + DNNLT L LRT
Sbjct: 41 GNAVLNVGESGLTTLPDCLP------------AHITTLVIPDNNLTSLPALPP---ELRT 85
Query: 78 LDISNNKLRYLPSEIGDLIYLRELCLNNNNLRTLPYELGKL 118
L++S N+L LP L+ L +L LP L KL
Sbjct: 86 LEVSGNQLTSLPVLPPGLLELSIFSNPLTHLPALPSGLCKL 126
Score = 68.0 bits (166), Expect = 3e-14
Identities = 33/142 (23%), Positives = 54/142 (38%), Gaps = 24/142 (16%)
Query: 1 MNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLS----------PDLWQFT 50
+ ++ LT L L ++ TL I +N L LP+ ++ L
Sbjct: 47 VGESGLTTL--PDCLPAHITTLVIPDNNLTSLPALPPELRTLEVSGNQLTSLPVLPPGLL 104
Query: 51 HLTALYMNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLRT 110
L+ +L +L L L I N+L LP L+EL +++N L +
Sbjct: 105 ELSIFSNPLTHLP------ALPSGLCKLWIFGNQLTSLPVLPPG---LQELSVSDNQLAS 155
Query: 111 LPYELGKLFQIQILGLHGNPLS 132
LP +L L + N L+
Sbjct: 156 LPALPSEL---CKLWAYNNQLT 174
Score = 56.4 bits (136), Expect = 3e-10
Identities = 22/83 (26%), Positives = 35/83 (42%), Gaps = 5/83 (6%)
Query: 50 THLTALYMNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLR 109
L + ++ LT L L ++ TL I +N L LP+ + LR L ++ N L
Sbjct: 40 NGNAVLNVGESGLTTL--PDCLPAHITTLVIPDNNLTSLPALPPE---LRTLEVSGNQLT 94
Query: 110 TLPYELGKLFQIQILGLHGNPLS 132
+LP L ++ I L
Sbjct: 95 SLPVLPPGLLELSIFSNPLTHLP 117
Score = 39.9 bits (93), Expect = 1e-04
Identities = 16/124 (12%), Positives = 35/124 (28%), Gaps = 14/124 (11%)
Query: 1 MNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDN 60
+ N LTRL + L + T+++ N L + +T+
Sbjct: 268 VYRNQLTRLPESLIHLSSETTVNLEGNPLSERTLQA------------LREITSAPGYSG 315
Query: 61 NLTRLSGDISLLINLRTLDISNNKLRYLPSEIGDLIYLRELCL--NNNNLRTLPYELGKL 118
+ R + +P+ G+ + +N L +L
Sbjct: 316 PIIRFDMAGASAPRETRALHLAAADWLVPAREGEPAPADRWHMFGQEDNADAFSLFLDRL 375
Query: 119 FQIQ 122
+ +
Sbjct: 376 SETE 379
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor
complex, developmental protein, domain, roundabout,
chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Length = 220
Score = 75.5 bits (186), Expect = 1e-17
Identities = 36/134 (26%), Positives = 56/134 (41%), Gaps = 13/134 (9%)
Query: 2 NDNNLTRLS-GDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDN 60
N + + G S LR +D+SNN++ L A + L L +L + N
Sbjct: 40 EQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAP--DAFQGL-------RSLNSLVLYGN 90
Query: 61 NLTRL-SGDISLLINLRTLDISNNKLRYLPSEIGD-LIYLRELCLNNNNLRTLPYE-LGK 117
+T L L +L+ L ++ NK+ L + L L L L +N L+T+
Sbjct: 91 KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSP 150
Query: 118 LFQIQILGLHGNPL 131
L IQ + L NP
Sbjct: 151 LRAIQTMHLAQNPF 164
Score = 55.4 bits (134), Expect = 3e-10
Identities = 28/118 (23%), Positives = 49/118 (41%), Gaps = 15/118 (12%)
Query: 18 NLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTRLS-GDISLLINLR 76
+ +D L +P+ + +T + + N + + G S LR
Sbjct: 12 SNNIVDCRGKGLTEIPTNL------------PETITEIRLEQNTIKVIPPGAFSPYKKLR 59
Query: 77 TLDISNNKLRYLPSEIGD-LIYLRELCLNNNNLRTLPYEL-GKLFQIQILGLHGNPLS 132
+D+SNN++ L + L L L L N + LP L LF +Q+L L+ N ++
Sbjct: 60 RIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKIN 117
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding;
HET: NAG; 2.00A {Anopheles gambiae}
Length = 317
Score = 75.0 bits (185), Expect = 5e-17
Identities = 28/135 (20%), Positives = 52/135 (38%), Gaps = 10/135 (7%)
Query: 1 MNDNNLTRL-SGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMND 59
+ +N +T L D ++ LD+ N++ + + L L +
Sbjct: 127 LANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVN--------FAELAASSDTLEHLNLQY 178
Query: 60 NNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLRTLPYELGKLF 119
N + + G + L+TLD+S+NKL ++ E + + L NN L + L
Sbjct: 179 NFIYDVKGQVVF-AKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQ 237
Query: 120 QIQILGLHGNPLSKD 134
++ L GN
Sbjct: 238 NLEHFDLRGNGFHCG 252
Score = 63.1 bits (154), Expect = 1e-12
Identities = 22/145 (15%), Positives = 52/145 (35%), Gaps = 19/145 (13%)
Query: 2 NDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGA-----------VKNLSPD-LWQF 49
N+N + ++ + ++ TL +NN + + G + L
Sbjct: 88 NNNYVQ----ELLVGPSIETLHAANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCR 143
Query: 50 THLTALYMNDNNLTRLSGD--ISLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNN 107
+ + L + N + ++ + L L++ N + + ++ L+ L L++N
Sbjct: 144 SRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVV-FAKLKTLDLSSNK 202
Query: 108 LRTLPYELGKLFQIQILGLHGNPLS 132
L + E + + L N L
Sbjct: 203 LAFMGPEFQSAAGVTWISLRNNKLV 227
Score = 63.1 bits (154), Expect = 1e-12
Identities = 23/129 (17%), Positives = 46/129 (35%), Gaps = 11/129 (8%)
Query: 1 MNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDN 60
+ N + + G + L+TLD+S+NKL ++ E +T + + +N
Sbjct: 176 LQYNFIYDVKGQVVF-AKLKTLDLSSNKLAFMGPEFQ----------SAAGVTWISLRNN 224
Query: 61 NLTRLSGDISLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLRTLPYELGKLFQ 120
L + + NL D+ N R + ++ L + +
Sbjct: 225 KLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECT 284
Query: 121 IQILGLHGN 129
+ LG +G
Sbjct: 285 VPTLGHYGA 293
Score = 61.5 bits (150), Expect = 4e-12
Identities = 29/148 (19%), Positives = 60/148 (40%), Gaps = 21/148 (14%)
Query: 1 MNDNNLTRLSGDI-SLLINLRTLDISNNKLRYLP-SEIGAVKNLS------------PDL 46
+ D++L + + N++ LD+S N L + +++ L DL
Sbjct: 17 VTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLDL 76
Query: 47 WQFTHLTALYMNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNN 106
+ L L +N+N + ++ + ++ TL +NN + + G + + L NN
Sbjct: 77 ESLSTLRTLDLNNNYVQ----ELLVGPSIETLHAANNNISRVSCSRGQG--KKNIYLANN 130
Query: 107 NLRTLP-YELGKLFQIQILGLHGNPLSK 133
+ L + G ++Q L L N +
Sbjct: 131 KITMLRDLDEGCRSRVQYLDLKLNEIDT 158
Score = 58.5 bits (142), Expect = 4e-11
Identities = 29/136 (21%), Positives = 56/136 (41%), Gaps = 20/136 (14%)
Query: 1 MNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDN 60
++ N L D+ L LRTLD++NN ++ L + L+ +N
Sbjct: 65 LSSNVLYETL-DLESLSTLRTLDLNNNYVQELL--------------VGPSIETLHAANN 109
Query: 61 NLTRLSGDISLLINLRTLDISNNKLRYLPS-EIGDLIYLRELCLNNNNLRTLPYE--LGK 117
N++R+S + + ++NNK+ L + G ++ L L N + T+ +
Sbjct: 110 NISRVSCSR--GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAAS 167
Query: 118 LFQIQILGLHGNPLSK 133
++ L L N +
Sbjct: 168 SDTLEHLNLQYNFIYD 183
Score = 55.0 bits (133), Expect = 7e-10
Identities = 24/126 (19%), Positives = 52/126 (41%), Gaps = 15/126 (11%)
Query: 9 LSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTRLS-G 67
+ + ++++ L+ + + ++ L ++ N L+++S
Sbjct: 2 IHEIKQNGNRYKIEKVTDSSLKQALASLRQ---------SAWNVKELDLSGNPLSQISAA 52
Query: 68 DISLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLRTLPYELGKLFQIQILGLH 127
D++ L L++S+N L ++ L LR L LNNN ++ L I+ L
Sbjct: 53 DLAPFTKLELLNLSSNVLYETL-DLESLSTLRTLDLNNNYVQELL----VGPSIETLHAA 107
Query: 128 GNPLSK 133
N +S+
Sbjct: 108 NNNISR 113
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4
complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB:
3zyo_A* 3zyn_A* 2dl9_A
Length = 452
Score = 75.2 bits (185), Expect = 1e-16
Identities = 33/134 (24%), Positives = 56/134 (41%), Gaps = 15/134 (11%)
Query: 2 NDNNLTRLSGDI-SLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDN 60
L +S L NL+ L++ ++ +P +L L L M+ N
Sbjct: 180 ELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMP-----------NLTPLVGLEELEMSGN 228
Query: 61 NLTRL-SGDISLLINLRTLDISNNKLRYLPSE-IGDLIYLRELCLNNNNLRTLPYE-LGK 117
+ + G L +L+ L + N+++ + L L EL L +NNL +LP++
Sbjct: 229 HFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTP 288
Query: 118 LFQIQILGLHGNPL 131
L + L LH NP
Sbjct: 289 LRYLVELHLHHNPW 302
Score = 72.1 bits (177), Expect = 1e-15
Identities = 29/137 (21%), Positives = 59/137 (43%), Gaps = 14/137 (10%)
Query: 1 MNDNNLTRLSGDI-SLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMND 59
+ N++ ++ + L +L TL++ +N L +PS + L L++ +
Sbjct: 106 LGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGA---------FEYLSKLRELWLRN 156
Query: 60 NNLTRLSGDI-SLLINLRTLDIS-NNKLRYLPSEI-GDLIYLRELCLNNNNLRTLPYELG 116
N + + + + +L LD+ KL Y+ L L+ L L N++ +P L
Sbjct: 157 NPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMP-NLT 215
Query: 117 KLFQIQILGLHGNPLSK 133
L ++ L + GN +
Sbjct: 216 PLVGLEELEMSGNHFPE 232
Score = 66.3 bits (162), Expect = 1e-13
Identities = 34/137 (24%), Positives = 53/137 (38%), Gaps = 14/137 (10%)
Query: 1 MNDNNLTRL-SGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMND 59
+ +NN+ + + L +L L + N +R + GA L L L + D
Sbjct: 82 LMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEV--GAFNGL-------ASLNTLELFD 132
Query: 60 NNLTRL-SGDISLLINLRTLDISNNKLRYLPSEI-GDLIYLRELCL-NNNNLRTLPYE-L 115
N LT + SG L LR L + NN + +PS + L L L L +
Sbjct: 133 NWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAF 192
Query: 116 GKLFQIQILGLHGNPLS 132
LF ++ L L +
Sbjct: 193 EGLFNLKYLNLGMCNIK 209
Score = 64.4 bits (157), Expect = 5e-13
Identities = 24/111 (21%), Positives = 52/111 (46%), Gaps = 12/111 (10%)
Query: 1 MNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDN 60
+ N+ + +++ L+ L L++S N + G+ L + L L++ ++
Sbjct: 203 LGMCNIKDMP-NLTPLVGLEELEMSGNHFPEIRP--GSFHGL-------SSLKKLWVMNS 252
Query: 61 NLTRLS-GDISLLINLRTLDISNNKLRYLPSEI-GDLIYLRELCLNNNNLR 109
++ + L +L L++++N L LP ++ L YL EL L++N
Sbjct: 253 QVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWN 303
Score = 59.4 bits (144), Expect = 2e-11
Identities = 23/119 (19%), Positives = 43/119 (36%), Gaps = 15/119 (12%)
Query: 18 NLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTRL-SGDISLLINLR 76
+ + L +P I ++ L + +NN+ + + L +L
Sbjct: 55 QFSKVVCTRRGLSEVPQGI------------PSNTRYLNLMENNIQMIQADTFRHLHHLE 102
Query: 77 TLDISNNKLRYLPSEI-GDLIYLRELCLNNNNLRTLPYE-LGKLFQIQILGLHGNPLSK 133
L + N +R + L L L L +N L +P L +++ L L NP+
Sbjct: 103 VLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIES 161
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse;
HET: NAG BMA MAN; 3.25A {Homo sapiens}
Length = 440
Score = 74.0 bits (182), Expect = 2e-16
Identities = 33/134 (24%), Positives = 62/134 (46%), Gaps = 15/134 (11%)
Query: 2 NDNNLTRLSGDI-SLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDN 60
L+ +S L NLR L+++ LR + P+L L L ++ N
Sbjct: 169 ELKRLSYISEGAFEGLSNLRYLNLAMCNLREI-----------PNLTPLIKLDELDLSGN 217
Query: 61 NLTRL-SGDISLLINLRTLDISNNKLRYLPSE-IGDLIYLRELCLNNNNLRTLPYE-LGK 117
+L+ + G L++L+ L + ++++ + +L L E+ L +NNL LP++
Sbjct: 218 HLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTP 277
Query: 118 LFQIQILGLHGNPL 131
L ++ + LH NP
Sbjct: 278 LHHLERIHLHHNPW 291
Score = 70.2 bits (172), Expect = 4e-15
Identities = 38/137 (27%), Positives = 65/137 (47%), Gaps = 14/137 (10%)
Query: 1 MNDNNLTRLSGDI-SLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMND 59
++ N++ + + L NL TL++ +N+L +P+ GA L + L L++ +
Sbjct: 95 LSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPN--GAFVYL-------SKLKELWLRN 145
Query: 60 NNLTRLSGDI-SLLINLRTLDIS-NNKLRYLPSEI-GDLIYLRELCLNNNNLRTLPYELG 116
N + + + + +LR LD+ +L Y+ L LR L L NLR +P L
Sbjct: 146 NPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIP-NLT 204
Query: 117 KLFQIQILGLHGNPLSK 133
L ++ L L GN LS
Sbjct: 205 PLIKLDELDLSGNHLSA 221
Score = 66.7 bits (163), Expect = 7e-14
Identities = 33/138 (23%), Positives = 54/138 (39%), Gaps = 14/138 (10%)
Query: 1 MNDNNLTRL-SGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMND 59
+++N + + L +L L +S N +R + GA L +L L + D
Sbjct: 71 LHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEI--GAFNGL-------ANLNTLELFD 121
Query: 60 NNLTRLS-GDISLLINLRTLDISNNKLRYLPSEI-GDLIYLRELCL-NNNNLRTLPYE-L 115
N LT + G L L+ L + NN + +PS + LR L L L +
Sbjct: 122 NRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAF 181
Query: 116 GKLFQIQILGLHGNPLSK 133
L ++ L L L +
Sbjct: 182 EGLSNLRYLNLAMCNLRE 199
Score = 64.8 bits (158), Expect = 3e-13
Identities = 24/111 (21%), Positives = 47/111 (42%), Gaps = 12/111 (10%)
Query: 1 MNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDN 60
+ NL + +++ LI L LD+S N L + HL L+M +
Sbjct: 192 LAMCNLREIP-NLTPLIKLDELDLSGNHLSAIRPGS---------FQGLMHLQKLWMIQS 241
Query: 61 NLTRLS-GDISLLINLRTLDISNNKLRYLPSEI-GDLIYLRELCLNNNNLR 109
+ + L +L +++++N L LP ++ L +L + L++N
Sbjct: 242 QIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN 292
Score = 62.5 bits (152), Expect = 2e-12
Identities = 34/135 (25%), Positives = 63/135 (46%), Gaps = 15/135 (11%)
Query: 2 NDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNN 61
NL + IS N R L++ N+++ + + K+L HL L ++ N+
Sbjct: 51 VRKNLREVPDGIS--TNTRLLNLHENQIQIIKV--NSFKHL-------RHLEILQLSRNH 99
Query: 62 LTRLSGDI-SLLINLRTLDISNNKLRYLPSEI-GDLIYLRELCLNNNNLRTLPYEL-GKL 118
+ + + L NL TL++ +N+L +P+ L L+EL L NN + ++P ++
Sbjct: 100 IRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRI 159
Query: 119 FQIQILGL-HGNPLS 132
++ L L LS
Sbjct: 160 PSLRRLDLGELKRLS 174
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis,
glycoprotein, secreted, chemotaxis, LRR structural
protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Length = 220
Score = 71.6 bits (176), Expect = 3e-16
Identities = 32/135 (23%), Positives = 57/135 (42%), Gaps = 14/135 (10%)
Query: 2 NDNNLTRLS--GDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMND 59
N+N T L G L LR ++ SNNK+ + GA + + + + +
Sbjct: 40 NNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEE--GAFEGA-------SGVNEILLTS 90
Query: 60 NNLTRL-SGDISLLINLRTLDISNNKLRYLPSEIGD-LIYLRELCLNNNNLRTLPYE-LG 116
N L + L +L+TL + +N++ + ++ L +R L L +N + T+
Sbjct: 91 NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFD 150
Query: 117 KLFQIQILGLHGNPL 131
L + L L NP
Sbjct: 151 TLHSLSTLNLLANPF 165
Score = 51.6 bits (124), Expect = 7e-09
Identities = 29/119 (24%), Positives = 50/119 (42%), Gaps = 16/119 (13%)
Query: 18 NLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTRLS--GDISLLINL 75
T+D SN KL +P I + L +N+N T L G L L
Sbjct: 12 EGTTVDCSNQKLNKIPEHI------------PQYTAELRLNNNEFTVLEATGIFKKLPQL 59
Query: 76 RTLDISNNKLRYLPSEIGD-LIYLRELCLNNNNLRTLPYEL-GKLFQIQILGLHGNPLS 132
R ++ SNNK+ + + + E+ L +N L + +++ L ++ L L N ++
Sbjct: 60 RKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRIT 118
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors,
glycocalicin, leucine rich repeats, BLOO clotting; HET:
NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB:
1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A*
1p8v_A* 1u0n_D 3p72_A
Length = 290
Score = 72.4 bits (178), Expect = 4e-16
Identities = 39/132 (29%), Positives = 54/132 (40%), Gaps = 11/132 (8%)
Query: 1 MNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDN 60
++ N L L L L LD+S N+L LP L L LY+ N
Sbjct: 84 LSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGA---------LRGLGELQELYLKGN 134
Query: 61 NLTRLSGDI-SLLINLRTLDISNNKLRYLPSEIGD-LIYLRELCLNNNNLRTLPYELGKL 118
L L + + L L ++NN L LP+ + + L L L L N+L T+P
Sbjct: 135 ELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGS 194
Query: 119 FQIQILGLHGNP 130
+ LHGNP
Sbjct: 195 HLLPFAFLHGNP 206
Score = 65.9 bits (161), Expect = 8e-14
Identities = 43/134 (32%), Positives = 58/134 (43%), Gaps = 14/134 (10%)
Query: 2 NDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNN 61
+ LT+L D L L TLD+S+N+L+ LP LT L ++ N
Sbjct: 63 DRAELTKLQVD-GTLPVLGTLDLSHNQLQSLPLLGQ----------TLPALTVLDVSFNR 111
Query: 62 LTRLSGDI-SLLINLRTLDISNNKLRYLPSEIGD-LIYLRELCLNNNNLRTLPYEL-GKL 118
LT L L L+ L + N+L+ LP + L +L L NNNL LP L L
Sbjct: 112 LTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGL 171
Query: 119 FQIQILGLHGNPLS 132
+ L L N L
Sbjct: 172 ENLDTLLLQENSLY 185
Score = 60.1 bits (146), Expect = 1e-11
Identities = 41/132 (31%), Positives = 58/132 (43%), Gaps = 13/132 (9%)
Query: 2 NDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNN 61
+ NLT L D+ + L +S N L + T LT L ++
Sbjct: 18 DKRNLTALPPDL--PKDTTILHLSENLLYTFSL--ATLMPY-------TRLTQLNLDRAE 66
Query: 62 LTRLSGDISLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLRTLPYEL-GKLFQ 120
LT+L D L L TLD+S+N+L+ LP L L L ++ N L +LP L +
Sbjct: 67 LTKLQVD-GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGE 125
Query: 121 IQILGLHGNPLS 132
+Q L L GN L
Sbjct: 126 LQELYLKGNELK 137
Score = 59.3 bits (144), Expect = 2e-11
Identities = 25/117 (21%), Positives = 47/117 (40%), Gaps = 14/117 (11%)
Query: 18 NLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTRLS-GDISLLINLR 76
+ ++ L LP ++ T L++++N L S + L
Sbjct: 11 SHLEVNCDKRNLTALPPDL------------PKDTTILHLSENLLYTFSLATLMPYTRLT 58
Query: 77 TLDISNNKLRYLPSEIGDLIYLRELCLNNNNLRTLPYELGKLFQIQILGLHGNPLSK 133
L++ +L L + G L L L L++N L++LP L + +L + N L+
Sbjct: 59 QLNLDRAELTKLQVD-GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTS 114
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A
{Anopheles gambiae}
Length = 390
Score = 73.2 bits (180), Expect = 4e-16
Identities = 31/134 (23%), Positives = 56/134 (41%), Gaps = 12/134 (8%)
Query: 1 MNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDN 60
+ NNLT + + L +D+S N+L + + L LY+++N
Sbjct: 233 LQHNNLTDTAW-LLNYPGLVEVDLSYNELEKIMYHP---------FVKMQRLERLYISNN 282
Query: 61 NLTRLSGDISLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLRTLPYELGKLFQ 120
L L+ + L+ LD+S+N L ++ L L L++N++ TL L
Sbjct: 283 RLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLK--LSTHHT 340
Query: 121 IQILGLHGNPLSKD 134
++ L L N +
Sbjct: 341 LKNLTLSHNDWDCN 354
Score = 64.7 bits (158), Expect = 3e-13
Identities = 29/145 (20%), Positives = 57/145 (39%), Gaps = 19/145 (13%)
Query: 1 MNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLS------------PDLWQ 48
++ N L+ L+ I + LD S+N + + L+ L
Sbjct: 193 VSYNLLSTLAI----PIAVEELDASHNSINVVRG--PVNVELTILKLQHNNLTDTAWLLN 246
Query: 49 FTHLTALYMNDNNLTRLSGDI-SLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNN 107
+ L + ++ N L ++ + L L ISNN+L L + L+ L L++N+
Sbjct: 247 YPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNH 306
Query: 108 LRTLPYELGKLFQIQILGLHGNPLS 132
L + + +++ L L N +
Sbjct: 307 LLHVERNQPQFDRLENLYLDHNSIV 331
Score = 61.6 bits (150), Expect = 4e-12
Identities = 29/140 (20%), Positives = 58/140 (41%), Gaps = 18/140 (12%)
Query: 3 DNNLTRLSGDISL------LINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALY 56
D ++ + D+ L N + + N+ +R LP+ + L F + L
Sbjct: 25 DVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAAL---------LDSFRQVELLN 75
Query: 57 MNDNNLTRLSGDI-SLLINLRTLDISNNKLRYLPSEI-GDLIYLRELCLNNNNLRTLPYE 114
+ND + + + ++ L + N +RYLP + ++ L L L N+L +LP
Sbjct: 76 LNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRG 135
Query: 115 L-GKLFQIQILGLHGNPLSK 133
+ ++ L + N L +
Sbjct: 136 IFHNTPKLTTLSMSNNNLER 155
Score = 55.8 bits (135), Expect = 4e-10
Identities = 34/133 (25%), Positives = 59/133 (44%), Gaps = 18/133 (13%)
Query: 1 MNDNNLTRLSGDI-SLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMND 59
+ N+L+ L I L TL +SNN L + + T L L ++
Sbjct: 124 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQ---------ATTSLQNLQLSS 174
Query: 60 NNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLRTLPYELGKLF 119
N LT + D+SL+ +L ++S N L S + I + EL ++N++ + +
Sbjct: 175 NRLTHV--DLSLIPSLFHANVSYNLL----STLAIPIAVEELDASHNSINVVRGPV--NV 226
Query: 120 QIQILGLHGNPLS 132
++ IL L N L+
Sbjct: 227 ELTILKLQHNNLT 239
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition,
OMGP, MAG, NOGO- signal transduction, neuronal
regeneration, ligand binding; HET: NDG MAN NAG BMA;
1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Length = 285
Score = 72.3 bits (178), Expect = 4e-16
Identities = 36/135 (26%), Positives = 60/135 (44%), Gaps = 13/135 (9%)
Query: 1 MNDNNLTRLSGDI-SLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMND 59
++ L L + L L+ L + +N L+ LP ++L +LT L+++
Sbjct: 112 LDRCGLQELGPGLFRGLAALQYLYLQDNALQALPD--DTFRDL-------GNLTHLFLHG 162
Query: 60 NNLTRLSGDI-SLLINLRTLDISNNKLRYLPSEI-GDLIYLRELCLNNNNLRTLPYE-LG 116
N ++ + L +L L + N++ ++ DL L L L NNL LP E L
Sbjct: 163 NRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALA 222
Query: 117 KLFQIQILGLHGNPL 131
L +Q L L+ NP
Sbjct: 223 PLRALQYLRLNDNPW 237
Score = 65.8 bits (161), Expect = 8e-14
Identities = 34/137 (24%), Positives = 56/137 (40%), Gaps = 14/137 (10%)
Query: 1 MNDNNLTRL-SGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMND 59
++ N ++ + + NL L + +N L + + A L L L ++D
Sbjct: 39 LHGNRISHVPAASFRACRNLTILWLHSNVLARIDA--AAFTGL-------ALLEQLDLSD 89
Query: 60 NN-LTRLSGDI-SLLINLRTLDISNNKLRYLPSEI-GDLIYLRELCLNNNNLRTLPYE-L 115
N L + L L TL + L+ L + L L+ L L +N L+ LP +
Sbjct: 90 NAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTF 149
Query: 116 GKLFQIQILGLHGNPLS 132
L + L LHGN +S
Sbjct: 150 RDLGNLTHLFLHGNRIS 166
Score = 65.0 bits (159), Expect = 2e-13
Identities = 33/120 (27%), Positives = 46/120 (38%), Gaps = 12/120 (10%)
Query: 16 LINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTRLSGDI-SLLIN 74
L L TL + L+ L G + L L LY+ DN L L D L N
Sbjct: 104 LGRLHTLHLDRCGLQELGP--GLFRGL-------AALQYLYLQDNALQALPDDTFRDLGN 154
Query: 75 LRTLDISNNKLRYLPSEI-GDLIYLRELCLNNNNLRTLPYE-LGKLFQIQILGLHGNPLS 132
L L + N++ +P L L L L+ N + + L ++ L L N LS
Sbjct: 155 LTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLS 214
Score = 59.2 bits (144), Expect = 2e-11
Identities = 30/135 (22%), Positives = 52/135 (38%), Gaps = 15/135 (11%)
Query: 2 NDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNN 61
L + I + + + N++ ++P+ +LT L+++ N
Sbjct: 19 PQQGLQAVPVGIP--AASQRIFLHGNRISHVPAA---------SFRACRNLTILWLHSNV 67
Query: 62 LTRLS-GDISLLINLRTLDISNN-KLRYLPSEI-GDLIYLRELCLNNNNLRTLPYE-LGK 117
L R+ + L L LD+S+N +LR + L L L L+ L+ L
Sbjct: 68 LARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRG 127
Query: 118 LFQIQILGLHGNPLS 132
L +Q L L N L
Sbjct: 128 LAALQYLYLQDNALQ 142
Score = 58.5 bits (142), Expect = 3e-11
Identities = 31/112 (27%), Positives = 45/112 (40%), Gaps = 12/112 (10%)
Query: 1 MNDNNLTRLSGDI-SLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMND 59
+ DN L L D L NL L + N++ +P A + L L L ++
Sbjct: 136 LQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPE--RAFRGL-------HSLDRLLLHQ 186
Query: 60 NNLTRLSGDI-SLLINLRTLDISNNKLRYLPSEI-GDLIYLRELCLNNNNLR 109
N + + L L TL + N L LP+E L L+ L LN+N
Sbjct: 187 NRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV 238
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding,
structural genomics, center for structural genomics,
JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Length = 636
Score = 72.8 bits (179), Expect = 6e-16
Identities = 29/143 (20%), Positives = 58/143 (40%), Gaps = 12/143 (8%)
Query: 1 MNDNNLTRL-SGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMND 59
+++N +++ S L ++++ N L +P K+ + + LT++ +
Sbjct: 440 LSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSL--KDENENFKNTYLLTSIDLRF 497
Query: 60 NNLTRLSGDISL--LINLRTLDISNNKLRYLPSEIGDLIYLRELCL-------NNNNLRT 110
N LT+LS D L L +D+S N P++ + L+ + N LR
Sbjct: 498 NKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLRE 557
Query: 111 LPYELGKLFQIQILGLHGNPLSK 133
P + + L + N + K
Sbjct: 558 WPEGITLCPSLTQLQIGSNDIRK 580
Score = 72.8 bits (179), Expect = 6e-16
Identities = 29/134 (21%), Positives = 51/134 (38%), Gaps = 4/134 (2%)
Query: 2 NDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNN 61
N NLT+L + L ++ ++++ N+ + L+ D + +Y+ NN
Sbjct: 258 NCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALA-DAPVGEKIQIIYIGYNN 316
Query: 62 LTRLS--GDISLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLRTLPYEL-GKL 118
L + + L L+ N+L G I L L L N + +P G
Sbjct: 317 LKTFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQITEIPANFCGFT 376
Query: 119 FQIQILGLHGNPLS 132
Q++ L N L
Sbjct: 377 EQVENLSFAHNKLK 390
Score = 68.1 bits (167), Expect = 3e-14
Identities = 25/137 (18%), Positives = 50/137 (36%), Gaps = 17/137 (12%)
Query: 3 DNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNL 62
N+L + + L ++D+ NKL L + +L + ++ N+
Sbjct: 474 KNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFR--------ATTLPYLVGIDLSYNSF 525
Query: 63 TRLSGDISLLINLRTLDIS-------NNKLRYLPSEIGDLIYLRELCLNNNNLRTLPYEL 115
++ L+ I N LR P I L +L + +N++R + ++
Sbjct: 526 SKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEKI 585
Query: 116 GKLFQIQILGLHGNPLS 132
I +L + NP
Sbjct: 586 --TPNISVLDIKDNPNI 600
Score = 62.0 bits (151), Expect = 4e-12
Identities = 25/143 (17%), Positives = 47/143 (32%), Gaps = 20/143 (13%)
Query: 1 MNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDN 60
N L I L +L+++ N++ +P+ + L N
Sbjct: 337 CLYNQLEGKLPAFGSEIKLASLNLAYNQITEIPANFCG---------FTEQVENLSFAHN 387
Query: 61 NLTRL--SGDISLLINLRTLDISNNKLR--------YLPSEIGDLIYLRELCLNNNNLRT 110
L + D + + +D S N++ L I + + L+NN +
Sbjct: 388 KLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISK 447
Query: 111 LPYE-LGKLFQIQILGLHGNPLS 132
P E + + L GN L+
Sbjct: 448 FPKELFSTGSPLSSINLMGNMLT 470
Score = 61.2 bits (149), Expect = 7e-12
Identities = 25/146 (17%), Positives = 50/146 (34%), Gaps = 23/146 (15%)
Query: 1 MNDNNLTRLS--GDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMN 58
+ NNL + + L L+ N+L G L +L +
Sbjct: 312 IGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPAFG----------SEIKLASLNLA 361
Query: 59 DNNLTRLSGDI-SLLINLRTLDISNNKLRYLPS--EIGDLIYLRELCLNNNNLR------ 109
N +T + + + L ++NKL+Y+P+ + + + + + N +
Sbjct: 362 YNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKN 421
Query: 110 --TLPYELGKLFQIQILGLHGNPLSK 133
L K + + L N +SK
Sbjct: 422 FDPLDPTPFKGINVSSINLSNNQISK 447
Score = 59.7 bits (145), Expect = 3e-11
Identities = 25/154 (16%), Positives = 53/154 (34%), Gaps = 22/154 (14%)
Query: 1 MNDNNLTRLSGDISLLINLRTLDISNNKLRYLP----------SEIGAVKNLSPDLWQFT 50
NN+T +S + L LR + N+ K
Sbjct: 190 QLSNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLK 249
Query: 51 HLTALYMNDNN-LTRLSGDISLLINLRTLDISNNKLRYLP---------SEIGDLIYLRE 100
LT + + + LT+L + L ++ ++++ N+ ++ ++
Sbjct: 250 DLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQI 309
Query: 101 LCLNNNNLRTL--PYELGKLFQIQILGLHGNPLS 132
+ + NNL+T L K+ ++ +L N L
Sbjct: 310 IYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLE 343
Score = 55.4 bits (134), Expect = 7e-10
Identities = 17/132 (12%), Positives = 43/132 (32%), Gaps = 14/132 (10%)
Query: 2 NDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNN 61
+D + + + + +N + ++ + + T L YM ++
Sbjct: 168 SDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAVM----------RLTKLRQFYMGNSP 217
Query: 62 LTRLSGDISLLINLRTLDISNNKLRYLPSEIGDLIYLRELCL-NNNNLRTLPYELGKLFQ 120
+ + + + +L L ++ + N NL LP L L +
Sbjct: 218 FV---AENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPE 274
Query: 121 IQILGLHGNPLS 132
+Q++ + N
Sbjct: 275 MQLINVACNRGI 286
Score = 53.5 bits (129), Expect = 3e-09
Identities = 25/133 (18%), Positives = 45/133 (33%), Gaps = 25/133 (18%)
Query: 3 DNNLTRLSGDISL--LINLRTLDISNNKLRYLPSEIGAVKNLS----------------- 43
N LT+LS D L L +D+S N P++ L
Sbjct: 497 FNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLR 556
Query: 44 ---PDLWQFTHLTALYMNDNNLTRLSGDISLLINLRTLDISNNKLRYLP-SEIGDLIYLR 99
+ LT L + N++ +++ + N+ LDI +N + S + I
Sbjct: 557 EWPEGITLCPSLTQLQIGSNDIRKVNE--KITPNISVLDIKDNPNISIDLSYVCPYIEAG 614
Query: 100 ELCLNNNNLRTLP 112
L + + +
Sbjct: 615 MYMLFYDKTQDIR 627
Score = 50.8 bits (122), Expect = 3e-08
Identities = 10/138 (7%), Positives = 37/138 (26%), Gaps = 14/138 (10%)
Query: 2 NDNNLT-RLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDN 60
+ R+ I L L L + ++ + +
Sbjct: 89 EGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLF-----GPKGISANMSDEQKQKMRM 143
Query: 61 NLTRLSGDISLLINLRTLDISNNKLR------YLPSEIGDLIYLRELCLNNNNLRTLPYE 114
+ + + D+ + + + + ++ +NN+ +
Sbjct: 144 HYQKTF--VDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKA 201
Query: 115 LGKLFQIQILGLHGNPLS 132
+ +L +++ + +P
Sbjct: 202 VMRLTKLRQFYMGNSPFV 219
Score = 37.3 bits (87), Expect = 0.001
Identities = 11/93 (11%), Positives = 29/93 (31%), Gaps = 8/93 (8%)
Query: 46 LWQFTHLTALYMNDNNLT-RLSGDISLLINLRTLDISNNKLR-----YLPSEIGDLIYLR 99
L +T L + + R+ I L L L + ++ + + P I +
Sbjct: 77 LNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDE 136
Query: 100 ELCLNNNNLRTLPYELGKLFQIQILGLHGNPLS 132
+ + + + + L + ++
Sbjct: 137 QKQKMRMHYQKT--FVDYDPREDFSDLIKDCIN 167
Score = 33.1 bits (76), Expect = 0.026
Identities = 10/66 (15%), Positives = 18/66 (27%), Gaps = 6/66 (9%)
Query: 74 NLRTLDISNNKLR-YLPSEIGDLIYLRELCLNNNNLR-----TLPYELGKLFQIQILGLH 127
+ L + +P IG L L L L ++ + P + +
Sbjct: 82 RVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKM 141
Query: 128 GNPLSK 133
K
Sbjct: 142 RMHYQK 147
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein;
HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A*
1xcd_A*
Length = 330
Score = 71.2 bits (175), Expect = 1e-15
Identities = 31/120 (25%), Positives = 55/120 (45%), Gaps = 14/120 (11%)
Query: 16 LINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTRLS-GDISLLIN 74
+ L + I++ + +P + LT L+++ N +T++ + L N
Sbjct: 170 MKKLSYIRIADTNITTIPQGL------------PPSLTELHLDGNKITKVDAASLKGLNN 217
Query: 75 LRTLDISNNKLRYLPSEI-GDLIYLRELCLNNNNLRTLPYELGKLFQIQILGLHGNPLSK 133
L L +S N + + + + +LREL LNNN L +P L IQ++ LH N +S
Sbjct: 218 LAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISA 277
Score = 66.2 bits (162), Expect = 8e-14
Identities = 31/140 (22%), Positives = 61/140 (43%), Gaps = 19/140 (13%)
Query: 1 MNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDN 60
+ D N+T + L +L L + NK+ + + L +L L ++ N
Sbjct: 178 IADTNITTIPQG--LPPSLTELHLDGNKITKVDAA---------SLKGLNNLAKLGLSFN 226
Query: 61 NLTRLS-GDISLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLRTLP------- 112
+++ + G ++ +LR L ++NNKL +P + D Y++ + L+NNN+ +
Sbjct: 227 SISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPP 286
Query: 113 YELGKLFQIQILGLHGNPLS 132
K + L NP+
Sbjct: 287 GYNTKKASYSGVSLFSNPVQ 306
Score = 61.6 bits (150), Expect = 4e-12
Identities = 31/136 (22%), Positives = 61/136 (44%), Gaps = 15/136 (11%)
Query: 2 NDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNN 61
+D L ++ D+ + LD+ NNK+ + D +L L + +N
Sbjct: 39 SDLGLEKVPKDLPP--DTALLDLQNNKITEIKDG---------DFKNLKNLHTLILINNK 87
Query: 62 LTRLSGDI-SLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLRTLPYE-LGKLF 119
++++S + L+ L L +S N+L+ LP ++ L+EL ++ N + + L
Sbjct: 88 ISKISPGAFAPLVKLERLYLSKNQLKELPEKM--PKTLQELRVHENEITKVRKSVFNGLN 145
Query: 120 QIQILGLHGNPLSKDY 135
Q+ ++ L NPL
Sbjct: 146 QMIVVELGTNPLKSSG 161
Score = 58.5 bits (142), Expect = 5e-11
Identities = 30/137 (21%), Positives = 56/137 (40%), Gaps = 16/137 (11%)
Query: 2 NDNNLTRLS-GDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDN 60
+N +T + GD L NL TL + NNK+ + GA L L LY++ N
Sbjct: 60 QNNKITEIKDGDFKNLKNLHTLILINNKISKISP--GAFAPL-------VKLERLYLSKN 110
Query: 61 NLTRLSGDISLLINLRTLDISNNKLRYLPSEI-GDLIYLRELCLNNNNLRTLPYELG--- 116
L L + L+ L + N++ + + L + + L N L++ E G
Sbjct: 111 QLKELPEK--MPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQ 168
Query: 117 KLFQIQILGLHGNPLSK 133
+ ++ + + ++
Sbjct: 169 GMKKLSYIRIADTNITT 185
Score = 57.3 bits (139), Expect = 1e-10
Identities = 29/138 (21%), Positives = 64/138 (46%), Gaps = 19/138 (13%)
Query: 1 MNDNNLTRLSGDI-SLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMND 59
+ +N ++++S + L+ L L +S N+L+ LP ++ L L +++
Sbjct: 83 LINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKM------------PKTLQELRVHE 130
Query: 60 NNLTRLSGDI-SLLINLRTLDISNNKLRYLPSEIG---DLIYLRELCLNNNNLRTLPYEL 115
N +T++ + + L + +++ N L+ E G + L + + + N+ T+P L
Sbjct: 131 NEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGL 190
Query: 116 GKLFQIQILGLHGNPLSK 133
+ L L GN ++K
Sbjct: 191 --PPSLTELHLDGNKITK 206
Score = 56.9 bits (138), Expect = 2e-10
Identities = 24/140 (17%), Positives = 56/140 (40%), Gaps = 20/140 (14%)
Query: 1 MNDNNLTRLS-GDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMND 59
++ N +T++ + L NL L +S N + + + G++ N HL L++N+
Sbjct: 199 LDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDN--GSLANTP-------HLRELHLNN 249
Query: 60 NNLTRLSGDISLLINLRTLDISNNKLRYLPSE-------IGDLIYLRELCLNNNNLRTL- 111
N L ++ G ++ ++ + + NN + + S + L +N ++
Sbjct: 250 NKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWE 309
Query: 112 --PYELGKLFQIQILGLHGN 129
P ++ + L
Sbjct: 310 IQPSTFRCVYVRAAVQLGNY 329
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG
containing, ligand binding protein,membr protein; HET:
NAG MAN; 2.70A {Homo sapiens}
Length = 477
Score = 71.7 bits (176), Expect = 2e-15
Identities = 31/132 (23%), Positives = 61/132 (46%), Gaps = 12/132 (9%)
Query: 4 NNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLT 63
L ++ + +NL +L I++ L +P AV++L +L L ++ N ++
Sbjct: 211 PYLDTMTPNCLYGLNLTSLSITHCNLTAVPY--LAVRHL-------VYLRFLNLSYNPIS 261
Query: 64 RLSGDI-SLLINLRTLDISNNKLRYLPSEI-GDLIYLRELCLNNNNLRTLPYEL-GKLFQ 120
+ G + L+ L+ + + +L + L YLR L ++ N L TL + +
Sbjct: 262 TIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGN 321
Query: 121 IQILGLHGNPLS 132
++ L L NPL+
Sbjct: 322 LETLILDSNPLA 333
Score = 70.1 bits (172), Expect = 5e-15
Identities = 35/137 (25%), Positives = 67/137 (48%), Gaps = 13/137 (9%)
Query: 1 MNDNNLTRLSGDI-SLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMND 59
+N+N ++ + + L NLRTL + +N+L+ +P + ++LT L +++
Sbjct: 63 LNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGV---------FTGLSNLTKLDISE 113
Query: 60 NNLTRLSGDI-SLLINLRTLDISNNKLRYLPSEI-GDLIYLRELCLNNNNLRTLPYE-LG 116
N + L + L NL++L++ +N L Y+ L L +L L NL ++P E L
Sbjct: 114 NKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALS 173
Query: 117 KLFQIQILGLHGNPLSK 133
L + +L L ++
Sbjct: 174 HLHGLIVLRLRHLNINA 190
Score = 68.2 bits (167), Expect = 3e-14
Identities = 31/151 (20%), Positives = 64/151 (42%), Gaps = 19/151 (12%)
Query: 1 MNDNNLTRL-SGDISLLINLRTLDISNNKLRYLP---------------SEIGAVKNLSP 44
+ NLT + + +S L L L + + + + S + ++P
Sbjct: 159 LEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTP 218
Query: 45 DLWQFTHLTALYMNDNNLTRLS-GDISLLINLRTLDISNNKLRYLPSEI-GDLIYLRELC 102
+ +LT+L + NLT + + L+ LR L++S N + + + +L+ L+E+
Sbjct: 219 NCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQ 278
Query: 103 LNNNNLRTLPYE-LGKLFQIQILGLHGNPLS 132
L L + L +++L + GN L+
Sbjct: 279 LVGGQLAVVEPYAFRGLNYLRVLNVSGNQLT 309
Score = 67.8 bits (166), Expect = 3e-14
Identities = 33/137 (24%), Positives = 60/137 (43%), Gaps = 13/137 (9%)
Query: 1 MNDNNLTRLS-GDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMND 59
+ N + L+ + + +L L+++ N + + GA NL +L L +
Sbjct: 39 LGKNRIKTLNQDEFASFPHLEELELNENIVSAVEP--GAFNNL-------FNLRTLGLRS 89
Query: 60 NNLTRLSGDI-SLLINLRTLDISNNKLRYLPSEI-GDLIYLRELCLNNNNLRTLPYE-LG 116
N L + + + L NL LDIS NK+ L + DL L+ L + +N+L + +
Sbjct: 90 NRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFS 149
Query: 117 KLFQIQILGLHGNPLSK 133
L ++ L L L+
Sbjct: 150 GLNSLEQLTLEKCNLTS 166
Score = 66.3 bits (162), Expect = 1e-13
Identities = 30/135 (22%), Positives = 59/135 (43%), Gaps = 14/135 (10%)
Query: 2 NDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNN 61
+ + I R LD+ N+++ L + + F HL L +N+N
Sbjct: 19 HRKRFVAVPEGIP--TETRLLDLGKNRIKTLNQD---------EFASFPHLEELELNENI 67
Query: 62 LTRLSGDI-SLLINLRTLDISNNKLRYLPSEI-GDLIYLRELCLNNNNLRTLPYEL-GKL 118
++ + + L NLRTL + +N+L+ +P + L L +L ++ N + L + L
Sbjct: 68 VSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDL 127
Query: 119 FQIQILGLHGNPLSK 133
+ ++ L + N L
Sbjct: 128 YNLKSLEVGDNDLVY 142
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold,
ligase; 2.80A {Shigella flexneri 2A}
Length = 571
Score = 70.8 bits (173), Expect = 3e-15
Identities = 36/140 (25%), Positives = 56/140 (40%), Gaps = 22/140 (15%)
Query: 2 NDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLS---------PDLWQFTHL 52
N NL+ L ++ + L+I+ N L LP +++ L P+L L
Sbjct: 67 NRLNLSSLPDNL--PPQITVLEITQNALISLPELPASLEYLDACDNRLSTLPEL--PASL 122
Query: 53 TALYMNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLRTLP 112
L +++N LT L + L ++ NN+L LP L L + NN L LP
Sbjct: 123 KHLDVDNNQLTMLPELPA---LLEYINADNNQLTMLPELPT---SLEVLSVRNNQLTFLP 176
Query: 113 YELGKLFQIQILGLHGNPLS 132
L + L + N L
Sbjct: 177 ELPESL---EALDVSTNLLE 193
Score = 69.6 bits (170), Expect = 7e-15
Identities = 30/153 (19%), Positives = 51/153 (33%), Gaps = 18/153 (11%)
Query: 1 MNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLS---------PDLWQFTH 51
+++N LT L + L ++ NN+L LP +++ LS P+L
Sbjct: 127 VDNNQLTMLPELPA---LLEYINADNNQLTMLPELPTSLEVLSVRNNQLTFLPEL--PES 181
Query: 52 LTALYMNDNNLTRLSGDISLLINLRT----LDISNNKLRYLPSEIGDLIYLRELCLNNNN 107
L AL ++ N L L + N++ ++P I L + L +N
Sbjct: 182 LEALDVSTNLLESLPAVPVRNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNP 241
Query: 108 LRTLPYELGKLFQIQILGLHGNPLSKDYMKIYN 140
L + E Q N
Sbjct: 242 LSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQN 274
Score = 58.8 bits (142), Expect = 5e-11
Identities = 26/130 (20%), Positives = 42/130 (32%), Gaps = 17/130 (13%)
Query: 4 NNLTRLSGDI-SLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNL 62
N ++ D S + S + + L +N NL
Sbjct: 20 NTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKEC--------LINQFSELQLNRLNL 71
Query: 63 TRLSGDISLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLRTLPYELGKLFQIQ 122
+ L ++ + L+I+ N L LP L L +N L TLP L +
Sbjct: 72 SSLPDNL--PPQITVLEITQNALISLPELPAS---LEYLDACDNRLSTLPELPASL---K 123
Query: 123 ILGLHGNPLS 132
L + N L+
Sbjct: 124 HLDVDNNQLT 133
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil,
helix-loop-helix, leucine-rich repeat, protein; HET: NAG
MAN; 2.70A {Anopheles gambiae}
Length = 597
Score = 70.0 bits (171), Expect = 7e-15
Identities = 31/134 (23%), Positives = 56/134 (41%), Gaps = 12/134 (8%)
Query: 1 MNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDN 60
+ NNLT + + L +D+S N+L + + L LY+++N
Sbjct: 239 LQHNNLTDTAW-LLNYPGLVEVDLSYNELEKIMYHP---------FVKMQRLERLYISNN 288
Query: 61 NLTRLSGDISLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLRTLPYELGKLFQ 120
L L+ + L+ LD+S+N L ++ L L L++N++ TL L
Sbjct: 289 RLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLK--LSTHHT 346
Query: 121 IQILGLHGNPLSKD 134
++ L L N +
Sbjct: 347 LKNLTLSHNDWDCN 360
Score = 58.8 bits (142), Expect = 5e-11
Identities = 29/140 (20%), Positives = 58/140 (41%), Gaps = 18/140 (12%)
Query: 3 DNNLTRLSGDISL------LINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALY 56
D ++ + D+ L N + + N+ +R LP+ + L F + L
Sbjct: 31 DVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAAL---------LDSFRQVELLN 81
Query: 57 MNDNNLTRLSGDI-SLLINLRTLDISNNKLRYLPSEI-GDLIYLRELCLNNNNLRTLPYE 114
+ND + + + ++ L + N +RYLP + ++ L L L N+L +LP
Sbjct: 82 LNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRG 141
Query: 115 L-GKLFQIQILGLHGNPLSK 133
+ ++ L + N L +
Sbjct: 142 IFHNTPKLTTLSMSNNNLER 161
Score = 53.0 bits (127), Expect = 4e-09
Identities = 34/133 (25%), Positives = 59/133 (44%), Gaps = 18/133 (13%)
Query: 1 MNDNNLTRLSGDI-SLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMND 59
+ N+L+ L I L TL +SNN L + + T L L ++
Sbjct: 130 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDT---------FQATTSLQNLQLSS 180
Query: 60 NNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLRTLPYELGKLF 119
N LT + D+SL+ +L ++S N L S + I + EL ++N++ + +
Sbjct: 181 NRLTHV--DLSLIPSLFHANVSYNLL----STLAIPIAVEELDASHNSINVVRGPV--NV 232
Query: 120 QIQILGLHGNPLS 132
++ IL L N L+
Sbjct: 233 ELTILKLQHNNLT 245
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix,
leucine-rich repeat, protein; HET: NAG MAN; 2.70A
{Anopheles gambiae}
Length = 487
Score = 69.9 bits (171), Expect = 7e-15
Identities = 28/135 (20%), Positives = 52/135 (38%), Gaps = 10/135 (7%)
Query: 1 MNDNNLTRL-SGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMND 59
+ +N +T L D ++ LD+ N++ + L L +
Sbjct: 127 LANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFA--------ELAASSDTLEHLNLQY 178
Query: 60 NNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLRTLPYELGKLF 119
N + + G + + L+TLD+S+NKL ++ E + + L NN L + L
Sbjct: 179 NFIYDVKGQV-VFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQ 237
Query: 120 QIQILGLHGNPLSKD 134
++ L GN
Sbjct: 238 NLEHFDLRGNGFHCG 252
Score = 60.2 bits (146), Expect = 1e-11
Identities = 16/132 (12%), Positives = 39/132 (29%), Gaps = 13/132 (9%)
Query: 3 DNNLTRLSGD--ISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDN 60
N + ++ + L L++ N + + ++ F L L ++ N
Sbjct: 153 LNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQV-----------VFAKLKTLDLSSN 201
Query: 61 NLTRLSGDISLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLRTLPYELGKLFQ 120
L + + + + + NNKL + + L L N
Sbjct: 202 KLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKN 261
Query: 121 IQILGLHGNPLS 132
++ + +
Sbjct: 262 QRVQTVAKQTVK 273
Score = 57.2 bits (138), Expect = 2e-10
Identities = 23/146 (15%), Positives = 51/146 (34%), Gaps = 19/146 (13%)
Query: 1 MNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGA-----------VKNLSPD-LWQ 48
+N+N + L ++ TL +NN + + G + L
Sbjct: 87 LNNNYVQELLV----GPSIETLHAANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGC 142
Query: 49 FTHLTALYMNDNNLTRLSGD--ISLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNN 106
+ + L + N + ++ + L L++ N + + ++ L+ L L++N
Sbjct: 143 RSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVV-FAKLKTLDLSSN 201
Query: 107 NLRTLPYELGKLFQIQILGLHGNPLS 132
L + E + + L N L
Sbjct: 202 KLAFMGPEFQSAAGVTWISLRNNKLV 227
Score = 56.0 bits (135), Expect = 5e-10
Identities = 28/157 (17%), Positives = 56/157 (35%), Gaps = 11/157 (7%)
Query: 1 MNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDN 60
+ N + + G + + L+TLD+S+NKL ++ E +T + + +N
Sbjct: 176 LQYNFIYDVKGQV-VFAKLKTLDLSSNKLAFMGPEFQ----------SAAGVTWISLRNN 224
Query: 61 NLTRLSGDISLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLRTLPYELGKLFQ 120
L + + NL D+ N R + ++ L + +
Sbjct: 225 KLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECT 284
Query: 121 IQILGLHGNPLSKDYMKIYNEPNGTQKLLSYLLDSLQ 157
+ LG +G +D + + K + L S Q
Sbjct: 285 VPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQ 321
Score = 55.2 bits (133), Expect = 7e-10
Identities = 30/148 (20%), Positives = 59/148 (39%), Gaps = 21/148 (14%)
Query: 1 MNDNNLTRLSGDI-SLLINLRTLDISNNKLRYL-PSEIGAVKNL------------SPDL 46
+ D++L + + N++ LD+S N L + +++ L + DL
Sbjct: 17 VTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLDL 76
Query: 47 WQFTHLTALYMNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNN 106
+ L L +N+N + L ++ TL +NN + + G + + L NN
Sbjct: 77 ESLSTLRTLDLNNNYVQELLV----GPSIETLHAANNNISRVSCSRGQG--KKNIYLANN 130
Query: 107 NLRTLP-YELGKLFQIQILGLHGNPLSK 133
+ L + G ++Q L L N +
Sbjct: 131 KITMLRDLDEGCRSRVQYLDLKLNEIDT 158
Score = 51.8 bits (124), Expect = 1e-08
Identities = 29/145 (20%), Positives = 56/145 (38%), Gaps = 16/145 (11%)
Query: 1 MNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIG---------AVKNLSPDLWQFTH 51
++ N L D+ L LRTLD++NN ++ L + +S
Sbjct: 65 LSSNVLYETL-DLESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSCSR--GQG 121
Query: 52 LTALYMNDNNLTRL-SGDISLLINLRTLDISNNKLRYLPSE--IGDLIYLRELCLNNNNL 108
+Y+ +N +T L D ++ LD+ N++ + L L L N +
Sbjct: 122 KKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFI 181
Query: 109 RTLPYELGKLFQIQILGLHGNPLSK 133
+ ++ +++ L L N L+
Sbjct: 182 YDVKGQVV-FAKLKTLDLSSNKLAF 205
Score = 49.5 bits (118), Expect = 8e-08
Identities = 24/122 (19%), Positives = 51/122 (41%), Gaps = 15/122 (12%)
Query: 13 ISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTRLS-GDISL 71
+ ++++ L+ + + ++ L ++ N L+++S D++
Sbjct: 6 KQNGNRYKIEKVTDSSLKQALASLRQ---------SAWNVKELDLSGNPLSQISAADLAP 56
Query: 72 LINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLRTLPYELGKLFQIQILGLHGNPL 131
L L++S+N L ++ L LR L LNNN ++ L I+ L N +
Sbjct: 57 FTKLELLNLSSNVLYETL-DLESLSTLRTLDLNNNYVQELL----VGPSIETLHAANNNI 111
Query: 132 SK 133
S+
Sbjct: 112 SR 113
Score = 39.1 bits (91), Expect = 3e-04
Identities = 18/138 (13%), Positives = 34/138 (24%), Gaps = 20/138 (14%)
Query: 1 MNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLS--------------PDL 46
+ +N L + + NL D+ N KN +
Sbjct: 221 LRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNE 280
Query: 47 WQFTHLTALYMNDNNLTRLSGDIS------LLINLRTLDISNNKLRYLPSEIGDLIYLRE 100
+ T T + L + L ++ L E + RE
Sbjct: 281 EECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQRE 340
Query: 101 LCLNNNNLRTLPYELGKL 118
+ RT+ ++
Sbjct: 341 IDALKEQYRTVIDQVTLR 358
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid,
MD-2, LPS, glycoprotein response, inflammatory response,
innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens}
PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Length = 276
Score = 68.1 bits (167), Expect = 1e-14
Identities = 32/137 (23%), Positives = 61/137 (44%), Gaps = 15/137 (10%)
Query: 1 MNDNNLTRL-SGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMND 59
+ NL L + I L L+ L++++N ++ NL T+L L ++
Sbjct: 107 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLP-EYFSNL-------TNLEHLDLSS 158
Query: 60 NNLTRLSGDI-----SLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLRTLPYE 114
N + + + + +LD+S N + ++ I L+EL L+ N L+++P
Sbjct: 159 NKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDG 218
Query: 115 -LGKLFQIQILGLHGNP 130
+L +Q + LH NP
Sbjct: 219 IFDRLTSLQKIWLHTNP 235
Score = 66.5 bits (163), Expect = 4e-14
Identities = 32/137 (23%), Positives = 59/137 (43%), Gaps = 14/137 (10%)
Query: 1 MNDNNLTRL-SGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMND 59
++ N L L S L+ LD+S +++ + GA ++L +HL+ L +
Sbjct: 35 LSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIED--GAYQSL-------SHLSTLILTG 85
Query: 60 NNLTRLSGDI-SLLINLRTLDISNNKLRYLPSEI-GDLIYLRELCLNNNNLRTLPYE--L 115
N + L+ S L +L+ L L L + G L L+EL + +N +++
Sbjct: 86 NPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYF 145
Query: 116 GKLFQIQILGLHGNPLS 132
L ++ L L N +
Sbjct: 146 SNLTNLEHLDLSSNKIQ 162
Score = 61.9 bits (151), Expect = 2e-12
Identities = 26/119 (21%), Positives = 50/119 (42%), Gaps = 12/119 (10%)
Query: 18 NLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTRLSGDI-SLLINLR 76
+ + LD+S N LR+L S + + L L ++ + + L +L
Sbjct: 29 STKNLDLSFNPLRHLGS--YSFFSF-------PELQVLDLSRCEIQTIEDGAYQSLSHLS 79
Query: 77 TLDISNNKLRYLPSEI-GDLIYLRELCLNNNNLRTLP-YELGKLFQIQILGLHGNPLSK 133
TL ++ N ++ L L L++L NL +L + +G L ++ L + N +
Sbjct: 80 TLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQS 138
Score = 60.8 bits (148), Expect = 5e-12
Identities = 29/140 (20%), Positives = 60/140 (42%), Gaps = 18/140 (12%)
Query: 2 NDNNLTRLSGDI-SLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDN 60
+ + + L +L TL ++ N ++ L GA L + L L +
Sbjct: 60 SRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLAL--GAFSGL-------SSLQKLVAVET 110
Query: 61 NLTRL-SGDISLLINLRTLDISNNKLRYLPSE--IGDLIYLRELCLNNNNLRTLPYE--- 114
NL L + I L L+ L++++N ++ +L L L L++N ++++
Sbjct: 111 NLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLR 170
Query: 115 -LGKLFQIQI-LGLHGNPLS 132
L ++ + + L L NP++
Sbjct: 171 VLHQMPLLNLSLDLSLNPMN 190
Score = 60.4 bits (147), Expect = 9e-12
Identities = 29/140 (20%), Positives = 51/140 (36%), Gaps = 17/140 (12%)
Query: 1 MNDNNLTRLSGDI-SLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMND 59
+ N + L+ S L +L+ L L L + + +L L L +
Sbjct: 83 LTGNPIQSLALGAFSGLSSLQKLVAVETNLASLEN--FPIGHL-------KTLKELNVAH 133
Query: 60 NNLTRL--SGDISLLINLRTLDISNNKLRYLPSEIGD-----LIYLRELCLNNNNLRTLP 112
N + S L NL LD+S+NK++ + + L L+ N + +
Sbjct: 134 NLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQ 193
Query: 113 YELGKLFQIQILGLHGNPLS 132
K +++ L L N L
Sbjct: 194 PGAFKEIRLKELALDTNQLK 213
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein,
signaling; HET: NAG FLC; 3.40A {Bos taurus}
Length = 332
Score = 68.1 bits (167), Expect = 2e-14
Identities = 38/150 (25%), Positives = 66/150 (44%), Gaps = 20/150 (13%)
Query: 2 NDNNLTRLSGDI-SLLINLRTLDISNNKLRYLPSEIGAVKNLS---------------PD 45
+DN + ++ + S L N+ +++ N L E GA L D
Sbjct: 131 HDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKD 190
Query: 46 LWQFTHLTALYMNDNNLTRLS-GDISLLINLRTLDISNNKLRYLPSEI-GDLIYLRELCL 103
L L L+++ N + + D+ L L + +N++R + + L LREL L
Sbjct: 191 L--PETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHL 248
Query: 104 NNNNLRTLPYELGKLFQIQILGLHGNPLSK 133
+NN L +P L L +Q++ LH N ++K
Sbjct: 249 DNNKLSRVPAGLPDLKLLQVVYLHTNNITK 278
Score = 67.3 bits (165), Expect = 4e-14
Identities = 34/140 (24%), Positives = 60/140 (42%), Gaps = 19/140 (13%)
Query: 1 MNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDN 60
+++ LT + D L L L + +NK++ + E DL +++ L L + N
Sbjct: 179 ISEAKLTGIPKD--LPETLNELHLDHNKIQAIELE---------DLLRYSKLYRLGLGHN 227
Query: 61 NLTRLSGDI-SLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLRTLP------- 112
+ + S L LR L + NNKL +P+ + DL L+ + L+ NN+ +
Sbjct: 228 QIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPV 287
Query: 113 YELGKLFQIQILGLHGNPLS 132
K + L NP+
Sbjct: 288 GFGVKRAYYNGISLFNNPVP 307
Score = 58.5 bits (142), Expect = 4e-11
Identities = 35/133 (26%), Positives = 59/133 (44%), Gaps = 15/133 (11%)
Query: 2 NDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNN 61
+D L + +IS + LD+ NN + L + D HL AL + +N
Sbjct: 41 SDLGLKAVPKEISP--DTTLLDLQNNDISELRKD---------DFKGLQHLYALVLVNNK 89
Query: 62 LTRLS-GDISLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLRTLPYE-LGKLF 119
++++ S L L+ L IS N L +P + L EL +++N +R +P L
Sbjct: 90 ISKIHEKAFSPLRKLQKLYISKNHLVEIPPNL--PSSLVELRIHDNRIRKVPKGVFSGLR 147
Query: 120 QIQILGLHGNPLS 132
+ + + GNPL
Sbjct: 148 NMNCIEMGGNPLE 160
Score = 56.2 bits (136), Expect = 3e-10
Identities = 30/135 (22%), Positives = 57/135 (42%), Gaps = 15/135 (11%)
Query: 3 DNNLTRLS-GDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNN 61
+N+++ L D L +L L + NNK+ + A L L LY++ N+
Sbjct: 63 NNDISELRKDDFKGLQHLYALVLVNNKISKIHE--KAFSPL-------RKLQKLYISKNH 113
Query: 62 LTRLSGDISLLINLRTLDISNNKLRYLPSEI-GDLIYLRELCLNNNNLRTLPYELG--KL 118
L + + L +L L I +N++R +P + L + + + N L +E G
Sbjct: 114 LVEIPPN--LPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDG 171
Query: 119 FQIQILGLHGNPLSK 133
++ L + L+
Sbjct: 172 LKLNYLRISEAKLTG 186
Score = 55.0 bits (133), Expect = 8e-10
Identities = 30/137 (21%), Positives = 57/137 (41%), Gaps = 18/137 (13%)
Query: 1 MNDNNLTRLS-GDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMND 59
+ +N ++++ S L L+ L IS N L +P + + L L ++D
Sbjct: 85 LVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNL------------PSSLVELRIHD 132
Query: 60 NNLTRLSGDI-SLLINLRTLDISNNKLRYLPSEIG--DLIYLRELCLNNNNLRTLPYELG 116
N + ++ + S L N+ +++ N L E G D + L L ++ L +P +L
Sbjct: 133 NRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDL- 191
Query: 117 KLFQIQILGLHGNPLSK 133
+ L L N +
Sbjct: 192 -PETLNELHLDHNKIQA 207
Score = 43.5 bits (103), Expect = 7e-06
Identities = 22/117 (18%), Positives = 40/117 (34%), Gaps = 21/117 (17%)
Query: 1 MNDNNLTRLSGDI-SLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMND 59
+ N + + S L LR L + NNKL +P L L +Y++
Sbjct: 224 LGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVP----------AGLPDLKLLQVVYLHT 273
Query: 60 NNLTRLSGDI-------SLLINLRTLDISNNKLRYL---PSEIGDLIYLRELCLNNN 106
NN+T++ + + + NN + Y P+ + + N
Sbjct: 274 NNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNY 330
Score = 42.7 bits (101), Expect = 1e-05
Identities = 9/87 (10%), Positives = 31/87 (35%), Gaps = 6/87 (6%)
Query: 1 MNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDN 60
+++N L+R+ + L L+ + + N + + + + + + + + +N
Sbjct: 248 LDNNKLSRVPAGLPDLKLLQVVYLHTNNITKVGV--NDFCPVGFGV-KRAYYNGISLFNN 304
Query: 61 NLTRLS---GDISLLINLRTLDISNNK 84
+ + + + N K
Sbjct: 305 PVPYWEVQPATFRCVTDRLAIQFGNYK 331
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich
RE receptor-like kinases, leucine-rich repeat; HET: NAG
BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A*
3rj0_A*
Length = 768
Score = 67.2 bits (165), Expect = 5e-14
Identities = 41/151 (27%), Positives = 68/151 (45%), Gaps = 19/151 (12%)
Query: 1 MNDNNLT-RLSGDISLLINLRTLDISNNKLR-YLPSEIGAVKNLS--------------P 44
+ +N T ++ +S L +L +S N L +PS +G++ L
Sbjct: 401 LQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQ 460
Query: 45 DLWQFTHLTALYMNDNNLT-RLSGDISLLINLRTLDISNNKLR-YLPSEIGDLIYLRELC 102
+L L L ++ N+LT + +S NL + +SNN+L +P IG L L L
Sbjct: 461 ELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILK 520
Query: 103 LNNNNLR-TLPYELGKLFQIQILGLHGNPLS 132
L+NN+ +P ELG + L L+ N +
Sbjct: 521 LSNNSFSGNIPAELGDCRSLIWLDLNTNLFN 551
Score = 63.4 bits (155), Expect = 1e-12
Identities = 37/134 (27%), Positives = 60/134 (44%), Gaps = 17/134 (12%)
Query: 8 RLSGDI-----SLLINLRTLDISNNKLR-YLPSEIGAVKNLSPDLWQFTHLTALYMNDNN 61
SG++ +L +L TLD+S+N + + L LY+ +N
Sbjct: 354 EFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQN--------PKNTLQELYLQNNG 405
Query: 62 LT-RLSGDISLLINLRTLDISNNKLR-YLPSEIGDLIYLRELCLNNNNLR-TLPYELGKL 118
T ++ +S L +L +S N L +PS +G L LR+L L N L +P EL +
Sbjct: 406 FTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYV 465
Query: 119 FQIQILGLHGNPLS 132
++ L L N L+
Sbjct: 466 KTLETLILDFNDLT 479
Score = 60.3 bits (147), Expect = 1e-11
Identities = 34/146 (23%), Positives = 56/146 (38%), Gaps = 24/146 (16%)
Query: 8 RLSGDISL--LINLRTLDISNNKLRYLPSEIGAVKNLS--------------PDLWQFTH 51
++SGD+ + +NL LD+S+N +G L + T
Sbjct: 189 KISGDVDVSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTE 248
Query: 52 LTALYMNDNNLTRLSGDI--SLLINLRTLDISNNKLR-YLPSEI-GDLIYLRELCLNNNN 107
L L ++ N G I L +L+ L ++ NK +P + G L L L+ N+
Sbjct: 249 LKLLNISSNQ---FVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNH 305
Query: 108 LR-TLPYELGKLFQIQILGLHGNPLS 132
+P G ++ L L N S
Sbjct: 306 FYGAVPPFFGSCSLLESLALSSNNFS 331
Score = 57.6 bits (140), Expect = 1e-10
Identities = 37/150 (24%), Positives = 55/150 (36%), Gaps = 18/150 (12%)
Query: 1 MNDNNLTRLSGDISLLINLRTLDISNNKLR-YLPSEIGAVKNL------------SPDLW 47
++ NN + + L+ LDIS NKL I L
Sbjct: 207 VSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL 266
Query: 48 QFTHLTALYMNDNNLT-RLSGDIS-LLINLRTLDISNNKLR-YLPSEIGDLIYLRELCLN 104
L L + +N T + +S L LD+S N +P G L L L+
Sbjct: 267 PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALS 326
Query: 105 NNNLR-TLPYE-LGKLFQIQILGLHGNPLS 132
+NN LP + L K+ +++L L N S
Sbjct: 327 SNNFSGELPMDTLLKMRGLKVLDLSFNEFS 356
Score = 51.4 bits (124), Expect = 2e-08
Identities = 31/136 (22%), Positives = 52/136 (38%), Gaps = 11/136 (8%)
Query: 1 MNDNNLT-RLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMND 59
+ N + + I + + N L + S L + + +
Sbjct: 565 IAANFIAGKRYVYIKNDGMKKECHGAGNLLEF-------QGIRSEQLNRLSTRNPCNITS 617
Query: 60 NNLT-RLSGDISLLINLRTLDISNNKLR-YLPSEIGDLIYLRELCLNNNNLR-TLPYELG 116
S ++ LD+S N L Y+P EIG + YL L L +N++ ++P E+G
Sbjct: 618 RVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVG 677
Query: 117 KLFQIQILGLHGNPLS 132
L + IL L N L
Sbjct: 678 DLRGLNILDLSSNKLD 693
Score = 49.5 bits (119), Expect = 8e-08
Identities = 26/148 (17%), Positives = 50/148 (33%), Gaps = 27/148 (18%)
Query: 9 LSGDISLLINLRTLDISNNKLRYLPSEIGAVKNL----------------SPDLWQFTHL 52
+S + L L +L +SN+ + S +L L + L
Sbjct: 69 VSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGL 128
Query: 53 TALYMNDNNLTRLSGDISLLIN---LRTLDISNNKLR-YLPSEI---GDLIYLRELCLNN 105
L ++ N L G +S + L LD+S N + L+ L ++
Sbjct: 129 KFLNVSSNTLD-FPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISG 187
Query: 106 NNLR-TLPYELGKLFQIQILGLHGNPLS 132
N + + + + ++ L + N S
Sbjct: 188 NKISGDVD--VSRCVNLEFLDVSSNNFS 213
Score = 48.0 bits (115), Expect = 2e-07
Identities = 27/120 (22%), Positives = 54/120 (45%), Gaps = 11/120 (9%)
Query: 18 NLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTRLSGDISLLINLRT 77
+ ++D+S+ L S + S L T L +L+++++++ +L +
Sbjct: 51 KVTSIDLSSKPLNVGFSAV------SSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTS 104
Query: 78 LDISNNKLR---YLPSEIGDLIYLRELCLNNNNLR-TLPYELG-KLFQIQILGLHGNPLS 132
LD+S N L + +G L+ L +++N L G KL +++L L N +S
Sbjct: 105 LDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSIS 164
Score = 44.9 bits (107), Expect = 3e-06
Identities = 19/90 (21%), Positives = 35/90 (38%), Gaps = 7/90 (7%)
Query: 50 THLTALYMNDNNLTRLSGDISLLI----NLRTLDISNNKLRYLPSEIGDLIYLRELCLNN 105
+T++ ++ L +S + L +L +SN+ + S L L L+
Sbjct: 50 DKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSR 109
Query: 106 NNLR---TLPYELGKLFQIQILGLHGNPLS 132
N+L T LG ++ L + N L
Sbjct: 110 NSLSGPVTTLTSLGSCSGLKFLNVSSNTLD 139
Score = 43.7 bits (104), Expect = 7e-06
Identities = 31/110 (28%), Positives = 49/110 (44%), Gaps = 14/110 (12%)
Query: 3 DNNLT-RLSGDISLLINLRTLDISNNKLR-YLPSEIGAVKNLSPDLWQFTHLTALYMNDN 60
S ++ LD+S N L Y+P EIG +L L + N
Sbjct: 617 SRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIG----------SMPYLFILNLGHN 666
Query: 61 NLT-RLSGDISLLINLRTLDISNNKLR-YLPSEIGDLIYLRELCLNNNNL 108
+++ + ++ L L LD+S+NKL +P + L L E+ L+NNNL
Sbjct: 667 DISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNL 716
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A
resolution, N-formylmethionine, alpha subunit; HET: FME;
2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1
c.10.2.2 PDB: 1ltx_A*
Length = 567
Score = 67.1 bits (163), Expect = 7e-14
Identities = 31/119 (26%), Positives = 52/119 (43%), Gaps = 14/119 (11%)
Query: 18 NLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTRLSGDISLLINLRT 77
++R L +++ L L L Q +T L ++ N L L ++ L L
Sbjct: 442 DVRVLHLAHKDLTVLCH-----------LEQLLLVTHLDLSHNRLRALPPALAALRCLEV 490
Query: 78 LDISNNKLRYLPSEIGDLIYLRELCLNNNNLRTLP--YELGKLFQIQILGLHGNPLSKD 134
L S+N L + + +L L+EL L NN L+ L ++ +L L GN L ++
Sbjct: 491 LQASDNALENVD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQE 548
Score = 65.9 bits (160), Expect = 2e-13
Identities = 28/129 (21%), Positives = 52/129 (40%), Gaps = 3/129 (2%)
Query: 4 NNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLT 63
+ L + L+ +D + S ++ + L++ +LT
Sbjct: 396 DPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSK-FLLENSVLKMEYADVRVLHLAHKDLT 454
Query: 64 RLSGDISLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLRTLPYELGKLFQIQI 123
L + L+ + LD+S+N+LR LP + L L L ++N L + + L ++Q
Sbjct: 455 VLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD-GVANLPRLQE 512
Query: 124 LGLHGNPLS 132
L L N L
Sbjct: 513 LLLCNNRLQ 521
Score = 52.8 bits (126), Expect = 5e-09
Identities = 18/99 (18%), Positives = 32/99 (32%), Gaps = 13/99 (13%)
Query: 2 NDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNN 61
+ N L L ++ L L L S+N L + + L L + +N
Sbjct: 471 SHNRLRALPPALAALRCLEVLQASDNALENV-----------DGVANLPRLQELLLCNNR 519
Query: 62 LTRLSG--DISLLINLRTLDISNNKLRYLPSEIGDLIYL 98
L + + + L L++ N L L +
Sbjct: 520 LQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEM 558
Score = 48.2 bits (114), Expect = 2e-07
Identities = 30/166 (18%), Positives = 51/166 (30%), Gaps = 37/166 (22%)
Query: 4 NNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSP-DLWQFTHLTALYMNDNNL 62
+ D + L ++S K L SE+ + K L + L + + L
Sbjct: 336 DRPECWCRDSATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRAL 395
Query: 63 TRLSGDISLLINL-----------------------------------RTLDISNNKLRY 87
L + L R L +++ L
Sbjct: 396 DPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTV 455
Query: 88 LPSEIGDLIYLRELCLNNNNLRTLPYELGKLFQIQILGLHGNPLSK 133
L + L+ + L L++N LR LP L L +++L N L
Sbjct: 456 LCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALEN 500
Score = 31.7 bits (71), Expect = 0.097
Identities = 7/48 (14%), Positives = 17/48 (35%), Gaps = 2/48 (4%)
Query: 1 MNDNNLTRLSG--DISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDL 46
+ +N L + + + L L++ N L + + P +
Sbjct: 515 LCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSV 562
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR,
immune system; 2.50A {Eptatretus burgeri}
Length = 270
Score = 65.8 bits (161), Expect = 9e-14
Identities = 46/135 (34%), Positives = 64/135 (47%), Gaps = 13/135 (9%)
Query: 2 NDNNLTRLSGDI-SLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDN 60
NDN L L I L NL TL +++NKL+ LP G L +L L ++ N
Sbjct: 69 NDNKLQTLPAGIFKELKNLETLWVTDNKLQALPI--GVFDQL-------VNLAELRLDRN 119
Query: 61 NLTRLSGDI-SLLINLRTLDISNNKLRYLPSEIGD-LIYLRELCLNNNNLRTLPYEL-GK 117
L L + L L L + N+L+ LP + D L L+EL L NN L+ +P K
Sbjct: 120 QLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDK 179
Query: 118 LFQIQILGLHGNPLS 132
L +++ L L N L
Sbjct: 180 LTELKTLKLDNNQLK 194
Score = 63.5 bits (155), Expect = 5e-13
Identities = 41/134 (30%), Positives = 64/134 (47%), Gaps = 13/134 (9%)
Query: 1 MNDNNLTRLSGDI-SLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMND 59
+ DN L L + L+NL L + N+L+ LP +L T LT L +
Sbjct: 92 VTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPP--RVFDSL-------TKLTYLSLGY 142
Query: 60 NNLTRLSGDI-SLLINLRTLDISNNKLRYLPSEIGD-LIYLRELCLNNNNLRTLPYEL-G 116
N L L + L +L+ L + NN+L+ +P D L L+ L L+NN L+ +P
Sbjct: 143 NELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFD 202
Query: 117 KLFQIQILGLHGNP 130
L ++++L L NP
Sbjct: 203 SLEKLKMLQLQENP 216
Score = 57.3 bits (139), Expect = 9e-11
Identities = 45/118 (38%), Positives = 62/118 (52%), Gaps = 12/118 (10%)
Query: 18 NLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTRLSGDI-SLLINLR 76
+ + LD+ +NKL LPS A L T L LY+NDN L L I L NL
Sbjct: 38 DTKKLDLQSNKLSSLPS--KAFHRL-------TKLRLLYLNDNKLQTLPAGIFKELKNLE 88
Query: 77 TLDISNNKLRYLPSEIGD-LIYLRELCLNNNNLRTLPYEL-GKLFQIQILGLHGNPLS 132
TL +++NKL+ LP + D L+ L EL L+ N L++LP + L ++ L L N L
Sbjct: 89 TLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQ 146
Score = 53.4 bits (129), Expect = 2e-09
Identities = 34/119 (28%), Positives = 52/119 (43%), Gaps = 15/119 (12%)
Query: 18 NLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTRLS-GDISLLINLR 76
N ++D S+ KL +PS I L + N L+ L L LR
Sbjct: 17 NKNSVDCSSKKLTAIPSNI------------PADTKKLDLQSNKLSSLPSKAFHRLTKLR 64
Query: 77 TLDISNNKLRYLPSEI-GDLIYLRELCLNNNNLRTLPYEL-GKLFQIQILGLHGNPLSK 133
L +++NKL+ LP+ I +L L L + +N L+ LP + +L + L L N L
Sbjct: 65 LLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKS 123
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS,
immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Length = 570
Score = 65.5 bits (160), Expect = 2e-13
Identities = 37/138 (26%), Positives = 56/138 (40%), Gaps = 15/138 (10%)
Query: 1 MNDNNLTRLS--GDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMN 58
+NL ++S L NL LDIS+ R + I + L L M
Sbjct: 403 FQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGI---------FNGLSSLEVLKMA 453
Query: 59 DNNLTR--LSGDISLLINLRTLDISNNKLRYLPSEI-GDLIYLRELCLNNNNLRTLPYE- 114
N+ L + L NL LD+S +L L L L+ L + +N L+++P
Sbjct: 454 GNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGI 513
Query: 115 LGKLFQIQILGLHGNPLS 132
+L +Q + LH NP
Sbjct: 514 FDRLTSLQKIWLHTNPWD 531
Score = 62.8 bits (153), Expect = 2e-12
Identities = 26/132 (19%), Positives = 49/132 (37%), Gaps = 10/132 (7%)
Query: 4 NNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLT 63
+N + L +L LD+S N L + + T L L ++ N +
Sbjct: 334 SNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGT-------TSLKYLDLSFNGVI 386
Query: 64 RLSGDISLLINLRTLDISNNKLRYLPSEI--GDLIYLRELCLNNNNLRTLPYE-LGKLFQ 120
+S + L L LD ++ L+ + L L L +++ + R L
Sbjct: 387 TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSS 446
Query: 121 IQILGLHGNPLS 132
+++L + GN
Sbjct: 447 LEVLKMAGNSFQ 458
Score = 62.0 bits (151), Expect = 4e-12
Identities = 28/136 (20%), Positives = 53/136 (38%), Gaps = 12/136 (8%)
Query: 1 MNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDN 60
++ N + +S + L L LD ++ L+ + +L +L L ++
Sbjct: 380 LSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEF-SVFLSL-------RNLIYLDISHT 431
Query: 61 NLTRL-SGDISLLINLRTLDISNNKLRY--LPSEIGDLIYLRELCLNNNNLRTLPYE-LG 116
+ +G + L +L L ++ N + LP +L L L L+ L L
Sbjct: 432 HTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFN 491
Query: 117 KLFQIQILGLHGNPLS 132
L +Q+L + N L
Sbjct: 492 SLSSLQVLNMASNQLK 507
Score = 58.6 bits (142), Expect = 6e-11
Identities = 29/134 (21%), Positives = 56/134 (41%), Gaps = 14/134 (10%)
Query: 2 NDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNN 61
+ N ++ ++ + + LD+S N LR+L S + F L L ++
Sbjct: 15 MELNFYKIPDNLP--FSTKNLDLSFNPLRHLGSY---------SFFSFPELQVLDLSRCE 63
Query: 62 LTRL-SGDISLLINLRTLDISNNKLRYLPSEI-GDLIYLRELCLNNNNLRTLPYE-LGKL 118
+ + G L +L TL ++ N ++ L L L++L NL +L +G L
Sbjct: 64 IQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHL 123
Query: 119 FQIQILGLHGNPLS 132
++ L + N +
Sbjct: 124 KTLKELNVAHNLIQ 137
Score = 58.6 bits (142), Expect = 6e-11
Identities = 31/138 (22%), Positives = 56/138 (40%), Gaps = 14/138 (10%)
Query: 1 MNDNNLTRL-SGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMND 59
++ N L L S L+ LD+S +++ + +HL+ L +
Sbjct: 35 LSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGA---------YQSLSHLSTLILTG 85
Query: 60 NNLTRLS-GDISLLINLRTLDISNNKLRYLPSE-IGDLIYLRELCLNNNNLRTLPY--EL 115
N + L+ G S L +L+ L L L + IG L L+EL + +N +++
Sbjct: 86 NPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYF 145
Query: 116 GKLFQIQILGLHGNPLSK 133
L ++ L L N +
Sbjct: 146 SNLTNLEHLDLSSNKIQS 163
Score = 54.0 bits (130), Expect = 2e-09
Identities = 30/142 (21%), Positives = 59/142 (41%), Gaps = 18/142 (12%)
Query: 1 MNDNNLTRL-SGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMND 59
++ + + G L +L TL ++ N ++ L + L L +
Sbjct: 59 LSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGA---------FSGLSSLQKLVAVE 109
Query: 60 NNLTRLSGD-ISLLINLRTLDISNNKLRYL--PSEIGDLIYLRELCLNNNNLRTLPYE-L 115
NL L I L L+ L++++N ++ P +L L L L++N ++++ L
Sbjct: 110 TNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDL 169
Query: 116 GKLFQIQI----LGLHGNPLSK 133
L Q+ + L L NP++
Sbjct: 170 RVLHQMPLLNLSLDLSLNPMNF 191
Score = 51.6 bits (124), Expect = 1e-08
Identities = 26/165 (15%), Positives = 60/165 (36%), Gaps = 16/165 (9%)
Query: 1 MNDNNLTRLSGD-ISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMND 59
+ NL L I L L+ L++++N ++ L T+L L ++
Sbjct: 107 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFK--------LPEYFSNLTNLEHLDLSS 158
Query: 60 NNLTRLSGDI-----SLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLRT--LP 112
N + + + + +LD+S N + ++ I L +L L NN +
Sbjct: 159 NKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMK 218
Query: 113 YELGKLFQIQILGLHGNPLSKDYMKIYNEPNGTQKLLSYLLDSLQ 157
+ L +++ L + + + + L + ++ +
Sbjct: 219 TCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFR 263
Score = 50.9 bits (122), Expect = 3e-08
Identities = 21/116 (18%), Positives = 37/116 (31%), Gaps = 15/116 (12%)
Query: 21 TLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTRL-SGDISLLINLRTLD 79
T +P + L ++ N L L S L+ LD
Sbjct: 11 TYQCMELNFYKIPDNL------------PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLD 58
Query: 80 ISNNKLRYLPSE-IGDLIYLRELCLNNNNLRTLPYE-LGKLFQIQILGLHGNPLSK 133
+S +++ + L +L L L N +++L L +Q L L+
Sbjct: 59 LSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLAS 114
Score = 41.2 bits (97), Expect = 5e-05
Identities = 33/132 (25%), Positives = 55/132 (41%), Gaps = 9/132 (6%)
Query: 2 NDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNN 61
N+ NL + D S L L L I +L YL + + +L L T++++ +
Sbjct: 239 NEGNLEKF--DKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCL---TNVSSFSLVSVT 293
Query: 62 LTRLSGDISLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLRTLPYELGKLFQI 121
+ R+ D S + L++ N K P+ L L+ L +N E+ L +
Sbjct: 294 IERVK-DFSYNFGWQHLELVNCKFGQFPT--LKLKSLKRLTFTSNKGGNAFSEVD-LPSL 349
Query: 122 QILGLHGNPLSK 133
+ L L N LS
Sbjct: 350 EFLDLSRNGLSF 361
Score = 33.1 bits (76), Expect = 0.025
Identities = 23/159 (14%), Positives = 44/159 (27%), Gaps = 29/159 (18%)
Query: 1 MNDNNLTRLSGDISLLINLRTLDISNNKLRY--LPSEIGAVKNL---------------- 42
++ N + + I L L + NN + + I + L
Sbjct: 184 LSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNL 243
Query: 43 -SPDLWQFTHLTALYMNDNNLTRLSGDISL-------LINLRTLDISNNKLRYLPSEIGD 94
D L L + + L L + L N+ + + + + + +
Sbjct: 244 EKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYN 303
Query: 95 LIYLRELCLNNNNLRTLPYELGKLFQIQILGLHGNPLSK 133
+ L L N P KL ++ L N
Sbjct: 304 F-GWQHLELVNCKFGQFPT--LKLKSLKRLTFTSNKGGN 339
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA,
receptor-ligand complex transferase; HET: NAG NDG MAN
BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Length = 347
Score = 65.1 bits (158), Expect = 3e-13
Identities = 28/91 (30%), Positives = 42/91 (46%), Gaps = 3/91 (3%)
Query: 44 PDLWQFTHLTALYMNDNN-LTRL-SGDISLLINLRTLDISNNKLRYLPSEI-GDLIYLRE 100
L +LT LY+ + L L D+ L LR L I + LR++ + L
Sbjct: 25 HHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSR 84
Query: 101 LCLNNNNLRTLPYELGKLFQIQILGLHGNPL 131
L L+ N L +L ++ + +Q L L GNPL
Sbjct: 85 LNLSFNALESLSWKTVQGLSLQELVLSGNPL 115
Score = 61.7 bits (149), Expect = 4e-12
Identities = 24/110 (21%), Positives = 41/110 (37%), Gaps = 11/110 (10%)
Query: 2 NDNNLTRLSGDISLLINLRTLDISNNK-LRYLPSEIGAVKNLSPDLWQFTHLTALYMNDN 60
+ + NL L I N + L++L ++ L L L + +
Sbjct: 16 TRDGALDSLHHLPGAENLTELYIENQQHLQHLEL--RDLRGL-------GELRNLTIVKS 66
Query: 61 NLTRLSGDI-SLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLR 109
L ++ D L L++S N L L + + L+EL L+ N L
Sbjct: 67 GLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLH 116
Score = 35.1 bits (80), Expect = 0.006
Identities = 11/59 (18%), Positives = 21/59 (35%), Gaps = 2/59 (3%)
Query: 76 RTLDISNNKLRYLPSEIGDLIYLRELCLNNNN-LRTLPYE-LGKLFQIQILGLHGNPLS 132
L + + + L EL + N L+ L L L +++ L + + L
Sbjct: 11 SGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR 69
Score = 25.9 bits (56), Expect = 8.0
Identities = 9/30 (30%), Positives = 15/30 (50%)
Query: 1 MNDNNLTRLSGDISLLINLRTLDISNNKLR 30
++ N L LS ++L+ L +S N L
Sbjct: 87 LSFNALESLSWKTVQGLSLQELVLSGNPLH 116
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto;
TLR2, PAM3CSK4, lipopeptide, innate immunity,
cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A
{Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A*
2z7x_A*
Length = 549
Score = 64.7 bits (158), Expect = 4e-13
Identities = 32/132 (24%), Positives = 56/132 (42%), Gaps = 17/132 (12%)
Query: 1 MNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDN 60
++ N + +R L++S+ +R + + I L L +++N
Sbjct: 394 ISRNTFHPMPDSCQWPEKMRFLNLSSTGIRVVKTCI------------PQTLEVLDVSNN 441
Query: 61 NLTRLSGDISLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLRTLPYE-LGKLF 119
NL S L L+ L IS NKL+ LP L + ++ N L+++P +L
Sbjct: 442 NLDSFS---LFLPRLQELYISRNKLKTLPDASL-FPVLLVMKISRNQLKSVPDGIFDRLT 497
Query: 120 QIQILGLHGNPL 131
+Q + LH NP
Sbjct: 498 SLQKIWLHTNPW 509
Score = 59.4 bits (144), Expect = 3e-11
Identities = 28/136 (20%), Positives = 55/136 (40%), Gaps = 12/136 (8%)
Query: 1 MNDNNLTRLSGDI-SLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMND 59
+ ++ + + L +L LD+S N + + A K + L L ++
Sbjct: 317 VENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKG------AWPSLQTLVLSQ 370
Query: 60 NNLTRLSGDISL---LINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLRTLPYELG 116
N+L + + L NL +LDIS N +P +R L L++ +R + +
Sbjct: 371 NHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIRVVKTCI- 429
Query: 117 KLFQIQILGLHGNPLS 132
+++L + N L
Sbjct: 430 -PQTLEVLDVSNNNLD 444
Score = 58.6 bits (142), Expect = 5e-11
Identities = 30/154 (19%), Positives = 60/154 (38%), Gaps = 30/154 (19%)
Query: 1 MNDNNLTRL----SGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALY 56
+++N + S +L+TL +S N LR + + L +LT+L
Sbjct: 341 LSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTL-------KNLTSLD 393
Query: 57 MNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEI------------------GDLIYL 98
++ N + +R L++S+ +R + + I L L
Sbjct: 394 ISRNTFHPMPDSCQWPEKMRFLNLSSTGIRVVKTCIPQTLEVLDVSNNNLDSFSLFLPRL 453
Query: 99 RELCLNNNNLRTLPYELGKLFQIQILGLHGNPLS 132
+EL ++ N L+TLP + + ++ + N L
Sbjct: 454 QELYISRNKLKTLP-DASLFPVLLVMKISRNQLK 486
Score = 55.1 bits (133), Expect = 8e-10
Identities = 33/133 (24%), Positives = 55/133 (41%), Gaps = 15/133 (11%)
Query: 3 DNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNL 62
+ T + ++ +++LD+S NK+ Y+ DL +L L + + +
Sbjct: 14 SRSFTSIPSGLTA--AMKSLDLSFNKITYIGHG---------DLRACANLQVLILKSSRI 62
Query: 63 TRLSGDI-SLLINLRTLDISNNKLRYLPSE-IGDLIYLRELCLNNNNLRTLPY--ELGKL 118
+ GD L +L LD+S+N L L S G L L+ L L N +TL L
Sbjct: 63 NTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNL 122
Query: 119 FQIQILGLHGNPL 131
+Q L +
Sbjct: 123 TNLQTLRIGNVET 135
Score = 54.7 bits (132), Expect = 1e-09
Identities = 25/117 (21%), Positives = 49/117 (41%), Gaps = 15/117 (12%)
Query: 19 LRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTRL-SGDISLLINLRT 77
D + +PS + + +L ++ N +T + GD+ NL+
Sbjct: 7 SGVCDGRSRSFTSIPSGL------------TAAMKSLDLSFNKITYIGHGDLRACANLQV 54
Query: 78 LDISNNKLRYLPSEI-GDLIYLRELCLNNNNLRTLPYE-LGKLFQIQILGLHGNPLS 132
L + ++++ + + L L L L++N+L +L G L ++ L L GNP
Sbjct: 55 LILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQ 111
Score = 54.7 bits (132), Expect = 1e-09
Identities = 27/139 (19%), Positives = 56/139 (40%), Gaps = 15/139 (10%)
Query: 1 MNDNNLTRL-SGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMND 59
++ N +T + GD+ NL+ L + ++++ + + + L L ++D
Sbjct: 33 LSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDA---------FYSLGSLEHLDLSD 83
Query: 60 NNLTRLS-GDISLLINLRTLDISNNKLRYLP--SEIGDLIYLRELCLNNNNLRTLPYE-- 114
N+L+ LS L +L+ L++ N + L S +L L+ L + N +
Sbjct: 84 NHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRID 143
Query: 115 LGKLFQIQILGLHGNPLSK 133
L + L + L
Sbjct: 144 FAGLTSLNELEIKALSLRN 162
Score = 50.9 bits (122), Expect = 2e-08
Identities = 32/138 (23%), Positives = 49/138 (35%), Gaps = 15/138 (10%)
Query: 1 MNDNNLTRLSGDI-SLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMND 59
+ + + + GD L +L LD+S+N L L S + L L +
Sbjct: 57 LKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSW---------FGPLSSLKYLNLMG 107
Query: 60 NNLTRL--SGDISLLINLRTLDIS-NNKLRYLPSE-IGDLIYLRELCLNNNNLRTL-PYE 114
N L + L NL+TL I + L L EL + +LR
Sbjct: 108 NPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQS 167
Query: 115 LGKLFQIQILGLHGNPLS 132
L + I L LH + +
Sbjct: 168 LKSIRDIHHLTLHLSESA 185
Score = 49.0 bits (117), Expect = 1e-07
Identities = 24/141 (17%), Positives = 48/141 (34%), Gaps = 18/141 (12%)
Query: 2 NDNNLTRLSGDISL-LINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDN 60
N + +S + + +R L I L Y S + + + + ++
Sbjct: 270 NPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTV---------YSLLEKVKRITVENS 320
Query: 61 NLTRLSGDI-SLLINLRTLDISNNKLRYL----PSEIGDLIYLRELCLNNNNLRTLPYEL 115
+ + L +L LD+S N + + G L+ L L+ N+LR++
Sbjct: 321 KVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTG 380
Query: 116 G---KLFQIQILGLHGNPLSK 133
L + L + N
Sbjct: 381 EILLTLKNLTSLDISRNTFHP 401
Score = 45.5 bits (108), Expect = 2e-06
Identities = 29/136 (21%), Positives = 48/136 (35%), Gaps = 7/136 (5%)
Query: 4 NNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLT 63
N L +L I L + D + N L V + + + + L++ L
Sbjct: 241 NELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKV-ETVTIRRLHIPQFYLF 299
Query: 64 RL-SGDISLLINLRTLDISNNKLRYLPSEIGD-LIYLRELCLNNNNLRTL----PYELGK 117
S SLL ++ + + N+K+ +P L L L L+ N + G
Sbjct: 300 YDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGA 359
Query: 118 LFQIQILGLHGNPLSK 133
+Q L L N L
Sbjct: 360 WPSLQTLVLSQNHLRS 375
Score = 40.9 bits (96), Expect = 6e-05
Identities = 19/135 (14%), Positives = 42/135 (31%), Gaps = 13/135 (9%)
Query: 2 NDNNLTRLS-GDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDN 60
N + + D + L +L L+I LR S+ L + L ++ +
Sbjct: 132 NVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQ---------SLKSIRDIHHLTLHLS 182
Query: 61 NLTRLSGDI-SLLINLRTLDISNNKLRYLPSEIGDLIYLRELC--LNNNNLRTLPYELGK 117
L +L ++R L++ + L + + L +
Sbjct: 183 ESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNE 242
Query: 118 LFQIQILGLHGNPLS 132
L ++ L + +
Sbjct: 243 LLKLLRYILELSEVE 257
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder,
flagella, contractIle protein; NMR {Chlamydomonas
reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Length = 198
Score = 62.8 bits (153), Expect = 4e-13
Identities = 36/154 (23%), Positives = 65/154 (42%), Gaps = 14/154 (9%)
Query: 1 MNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDN 60
+ ++ +S L + L +S N I + +LS +L L + N
Sbjct: 32 GMIPPIEKMDATLSTLKACKHLALSTNN-------IEKISSLS----GMENLRILSLGRN 80
Query: 61 NLTRLSGDISLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLRTLP--YELGKL 118
+ ++ ++ L L IS N++ L S I L+ LR L ++NN + +L L
Sbjct: 81 LIKKIENLDAVADTLEELWISYNQIASL-SGIEKLVNLRVLYMSNNKITNWGEIDKLAAL 139
Query: 119 FQIQILGLHGNPLSKDYMKIYNEPNGTQKLLSYL 152
+++ L L GNPL DY + +++ L
Sbjct: 140 DKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRL 173
Score = 47.8 bits (114), Expect = 1e-07
Identities = 23/121 (19%), Positives = 55/121 (45%), Gaps = 2/121 (1%)
Query: 13 ISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTRLSGDISLL 72
I + +++ + + L I ++ + L L ++ NN+ ++S +S +
Sbjct: 11 IRIFEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKISS-LSGM 69
Query: 73 INLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLRTLPYELGKLFQIQILGLHGNPLS 132
NLR L + N ++ + + L EL ++ N + +L + KL +++L + N ++
Sbjct: 70 ENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLS-GIEKLVNLRVLYMSNNKIT 128
Query: 133 K 133
Sbjct: 129 N 129
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like
receptor, MD-2, LPS, leucine-rich repeat, glycoprotein,
immune response; HET: NAG BMA FUL; 1.90A {Eptatretus
burgeri}
Length = 306
Score = 64.3 bits (157), Expect = 4e-13
Identities = 27/136 (19%), Positives = 51/136 (37%), Gaps = 12/136 (8%)
Query: 1 MNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDN 60
++ N + +S + L L LD ++ L+ + E +L +L L ++
Sbjct: 85 LSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMS-EFSVFLSL-------RNLIYLDISHT 136
Query: 61 NLTRLSGDI-SLLINLRTLDISNNK-LRYLPSEI-GDLIYLRELCLNNNNLRTLPYE-LG 116
+ I + L +L L ++ N +I +L L L L+ L L
Sbjct: 137 HTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFN 196
Query: 117 KLFQIQILGLHGNPLS 132
L +Q+L + N
Sbjct: 197 SLSSLQVLNMSHNNFF 212
Score = 64.3 bits (157), Expect = 4e-13
Identities = 35/154 (22%), Positives = 60/154 (38%), Gaps = 22/154 (14%)
Query: 1 MNDNNLTRLS--GDISLLINLRTLDISNNKLRYLPSEI---------------GAVKNLS 43
+NL ++S L NL LDIS+ R + I +N
Sbjct: 108 FQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFL 167
Query: 44 PDLWQ-FTHLTALYMNDNNLTRLSGDISL-LINLRTLDISNNKLRYLPSEI-GDLIYLRE 100
PD++ +LT L ++ L +LS L +L+ L++S+N L + L L+
Sbjct: 168 PDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQV 227
Query: 101 LCLNNNNLRTLPYEL--GKLFQIQILGLHGNPLS 132
L + N++ T + + L L N +
Sbjct: 228 LDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 261
Score = 62.0 bits (151), Expect = 3e-12
Identities = 31/136 (22%), Positives = 51/136 (37%), Gaps = 16/136 (11%)
Query: 2 NDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNN 61
N LT + I + L++ +NKL+ LP G L T LT L ++ N
Sbjct: 15 NSKGLTSVPTGIP--SSATRLELESNKLQSLPH--GVFDKL-------TQLTKLSLSSNG 63
Query: 62 LTRLS---GDISLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLRTLPYE--LG 116
L+ +L+ LD+S N + + S L L L ++NL+ +
Sbjct: 64 LSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFL 123
Query: 117 KLFQIQILGLHGNPLS 132
L + L +
Sbjct: 124 SLRNLIYLDISHTHTR 139
Score = 55.8 bits (135), Expect = 4e-10
Identities = 24/119 (20%), Positives = 42/119 (35%), Gaps = 16/119 (13%)
Query: 18 NLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTRL-SGDISLLINLR 76
+ + ++ L +P+ I + T L + N L L G L L
Sbjct: 8 SGTEIRCNSKGLTSVPTGI------------PSSATRLELESNKLQSLPHGVFDKLTQLT 55
Query: 77 TLDISNNKLRYLPSEIG---DLIYLRELCLNNNNLRTLPYELGKLFQIQILGLHGNPLS 132
L +S+N L + L+ L L+ N + T+ L Q++ L + L
Sbjct: 56 KLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLK 114
>4fmz_A Internalin; leucine rich repeat, structural genomic center for
structural genomics, JCSG, protein structure INI
PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes
serotype 4B}
Length = 347
Score = 64.1 bits (157), Expect = 4e-13
Identities = 26/144 (18%), Positives = 62/144 (43%), Gaps = 16/144 (11%)
Query: 2 NDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLS------------PDLWQF 49
+ + G I L NL L+++ N++ + + + L+ L
Sbjct: 52 AGEKVASIQG-IEYLTNLEYLNLNGNQITDIS-PLSNLVKLTNLYIGTNKITDISALQNL 109
Query: 50 THLTALYMNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLR 109
T+L LY+N++N++ +S ++ L + +L++ N S + ++ L L + + ++
Sbjct: 110 TNLRELYLNEDNISDIS-PLANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVK 168
Query: 110 TLPYELGKLFQIQILGLHGNPLSK 133
+ + L + L L+ N +
Sbjct: 169 DVT-PIANLTDLYSLSLNYNQIED 191
Score = 61.4 bits (150), Expect = 5e-12
Identities = 30/134 (22%), Positives = 58/134 (43%), Gaps = 15/134 (11%)
Query: 1 MNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDN 60
+ +N +T LS ++ L L L+I N++ + + + T L L + N
Sbjct: 228 IGNNKITDLSP-LANLSQLTWLEIGTNQISDINA-----------VKDLTKLKMLNVGSN 275
Query: 61 NLTRLSGDISLLINLRTLDISNNKLRYL-PSEIGDLIYLRELCLNNNNLRTLPYELGKLF 119
++ +S ++ L L +L ++NN+L IG L L L L+ N++ + L L
Sbjct: 276 QISDISV-LNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIR-PLASLS 333
Query: 120 QIQILGLHGNPLSK 133
++ + K
Sbjct: 334 KMDSADFANQVIKK 347
Score = 61.0 bits (149), Expect = 7e-12
Identities = 26/145 (17%), Positives = 56/145 (38%), Gaps = 16/145 (11%)
Query: 1 MNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNL------------SPDLWQ 48
+ ++T + L ++ L ++ K+ + I + NL L
Sbjct: 29 LQKASVTDVVT-QEELESITKLVVAGEKVASIQ-GIEYLTNLEYLNLNGNQITDISPLSN 86
Query: 49 FTHLTALYMNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNL 108
LT LY+ N +T +S + L NLR L ++ + + + + +L + L L N+
Sbjct: 87 LVKLTNLYIGTNKITDISA-LQNLTNLRELYLNEDNISDISP-LANLTKMYSLNLGANHN 144
Query: 109 RTLPYELGKLFQIQILGLHGNPLSK 133
+ L + + L + + +
Sbjct: 145 LSDLSPLSNMTGLNYLTVTESKVKD 169
Score = 60.2 bits (147), Expect = 1e-11
Identities = 31/134 (23%), Positives = 59/134 (44%), Gaps = 15/134 (11%)
Query: 1 MNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDN 60
N +T ++ ++ + L +L I NNK+ L L + LT L + N
Sbjct: 206 AYVNQITDITP-VANMTRLNSLKIGNNKITDLSP-----------LANLSQLTWLEIGTN 253
Query: 61 NLTRLSGDISLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLRTL-PYELGKLF 119
++ ++ + L L+ L++ +N++ + + +L L L LNNN L +G L
Sbjct: 254 QISDINA-VKDLTKLKMLNVGSNQISDISV-LNNLSQLNSLFLNNNQLGNEDMEVIGGLT 311
Query: 120 QIQILGLHGNPLSK 133
+ L L N ++
Sbjct: 312 NLTTLFLSQNHITD 325
Score = 57.9 bits (141), Expect = 7e-11
Identities = 25/132 (18%), Positives = 58/132 (43%), Gaps = 15/132 (11%)
Query: 2 NDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNN 61
++ + ++ I+ L +L +L ++ N++ + L T L N
Sbjct: 163 TESKVKDVTP-IANLTDLYSLSLNYNQIEDISP-----------LASLTSLHYFTAYVNQ 210
Query: 62 LTRLSGDISLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLRTLPYELGKLFQI 121
+T ++ ++ + L +L I NNK+ L + +L L L + N + + + L ++
Sbjct: 211 ITDITP-VANMTRLNSLKIGNNKITDLSP-LANLSQLTWLEIGTNQISDIN-AVKDLTKL 267
Query: 122 QILGLHGNPLSK 133
++L + N +S
Sbjct: 268 KMLNVGSNQISD 279
Score = 53.7 bits (130), Expect = 2e-09
Identities = 20/131 (15%), Positives = 50/131 (38%), Gaps = 15/131 (11%)
Query: 3 DNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNL 62
+ ++ D + L + + + + + +T L + +
Sbjct: 9 PAPINQIFPD-ADLAEGIRAVLQKASVTDVVT-----------QEELESITKLVVAGEKV 56
Query: 63 TRLSGDISLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLRTLPYELGKLFQIQ 122
+ G I L NL L+++ N++ + + +L+ L L + N + + L L ++
Sbjct: 57 ASIQG-IEYLTNLEYLNLNGNQITDIS-PLSNLVKLTNLYIGTNKITDIS-ALQNLTNLR 113
Query: 123 ILGLHGNPLSK 133
L L+ + +S
Sbjct: 114 ELYLNEDNISD 124
Score = 39.4 bits (93), Expect = 2e-04
Identities = 10/82 (12%), Positives = 31/82 (37%), Gaps = 3/82 (3%)
Query: 52 LTALYMNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLRTL 111
L + ++ D + L + + + + +L + +L + + ++
Sbjct: 2 AATLATLPAPINQIFPD-ADLAEGIRAVLQKASVTDVVT-QEELESITKLVVAGEKVASI 59
Query: 112 PYELGKLFQIQILGLHGNPLSK 133
+ L ++ L L+GN ++
Sbjct: 60 Q-GIEYLTNLEYLNLNGNQITD 80
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein;
innate immunity, leucine-rich repeat, innate immune
receptor system; HET: NAG; 2.47A {Danio rerio} PDB:
3v44_A*
Length = 455
Score = 64.0 bits (156), Expect = 6e-13
Identities = 34/134 (25%), Positives = 59/134 (44%), Gaps = 13/134 (9%)
Query: 2 NDNNLTRLSGDI-SLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDN 60
+ + + L + S +L L ++ N++ + W THL L ++ N
Sbjct: 283 SKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNA---------FWGLTHLLKLNLSQN 333
Query: 61 NLTRLSGDI-SLLINLRTLDISNNKLRYLPSEIGD-LIYLRELCLNNNNLRTLPYE-LGK 117
L + + L L LD+S N +R L + L L+EL L+ N L+++P +
Sbjct: 334 FLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDR 393
Query: 118 LFQIQILGLHGNPL 131
L +Q + LH NP
Sbjct: 394 LTSLQKIWLHTNPW 407
Score = 58.2 bits (141), Expect = 6e-11
Identities = 29/118 (24%), Positives = 52/118 (44%), Gaps = 12/118 (10%)
Query: 18 NLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTRLSGDI-SLLINLR 76
++T D+S +K+ L + FT L L + N + ++ + L +L
Sbjct: 276 GVKTCDLSKSKIFALLKSV---------FSHFTDLEQLTLAQNEINKIDDNAFWGLTHLL 326
Query: 77 TLDISNNKLRYLPSEIGD-LIYLRELCLNNNNLRTLPYEL-GKLFQIQILGLHGNPLS 132
L++S N L + S + + L L L L+ N++R L + L ++ L L N L
Sbjct: 327 KLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLK 384
Score = 54.4 bits (131), Expect = 1e-09
Identities = 25/139 (17%), Positives = 49/139 (35%), Gaps = 15/139 (10%)
Query: 1 MNDNNLTRL-SGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMND 59
++ N++ L S L +L+ L + + + L + L L ++
Sbjct: 37 LSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRN-NTFRGL-------SSLIILKLDY 88
Query: 60 NNLTRLSGDI-SLLINLRTLDISNNKLRYLPSEIG---DLIYLRELCLNNNNLRTLPYE- 114
N +L + L NL L ++ L L L L L +NN++ +
Sbjct: 89 NQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPAS 148
Query: 115 -LGKLFQIQILGLHGNPLS 132
+ + +L L N +
Sbjct: 149 FFLNMRRFHVLDLTFNKVK 167
Score = 52.1 bits (125), Expect = 8e-09
Identities = 33/171 (19%), Positives = 59/171 (34%), Gaps = 22/171 (12%)
Query: 2 NDNNLTRLSGDI-SLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDN 60
+ N +L + L NL L ++ L K L T L L + DN
Sbjct: 87 DYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPL-------TSLEMLVLRDN 139
Query: 61 NLTRLS--GDISLLINLRTLDISNNKLRYLPSEIGD---LIYLRELCLNNNNLRTLPYEL 115
N+ ++ + LD++ NK++ + E + L L++ L+ +
Sbjct: 140 NIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYW 199
Query: 116 G---------KLFQIQILGLHGNPLSKDYMKIYNEPNGTQKLLSYLLDSLQ 157
K I L L GN + K + + K+ S +L +
Sbjct: 200 LGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSY 250
Score = 50.1 bits (120), Expect = 5e-08
Identities = 27/112 (24%), Positives = 50/112 (44%), Gaps = 12/112 (10%)
Query: 1 MNDNNLTRLSGDI-SLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMND 59
+ N + ++ + L +L L++S N L + S +NL L L ++
Sbjct: 306 LAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDS--RMFENL-------DKLEVLDLSY 356
Query: 60 NNLTRLSGDI-SLLINLRTLDISNNKLRYLPSEIGD-LIYLRELCLNNNNLR 109
N++ L L NL+ L + N+L+ +P I D L L+++ L+ N
Sbjct: 357 NHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 408
Score = 49.4 bits (118), Expect = 8e-08
Identities = 23/125 (18%), Positives = 40/125 (32%), Gaps = 15/125 (12%)
Query: 14 SLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTRL--SGDISL 71
L ++ +D+S N + L + L L L + + +
Sbjct: 27 ELPAHVNYVDLSLNSIAELNE--TSFSRL-------QDLQFLKVEQQTPGLVIRNNTFRG 77
Query: 72 LINLRTLDISNNKLRYLPSEI-GDLIYLRELCLNNNNLRTLPYELG---KLFQIQILGLH 127
L +L L + N+ L + L L L L NL L +++L L
Sbjct: 78 LSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLR 137
Query: 128 GNPLS 132
N +
Sbjct: 138 DNNIK 142
Score = 39.3 bits (92), Expect = 2e-04
Identities = 22/143 (15%), Positives = 50/143 (34%), Gaps = 12/143 (8%)
Query: 1 MNDNNLTRLS--GDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMN 58
+ DNN+ ++ + LD++ NK++ + + N + L+++ +
Sbjct: 136 LRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICE--EDLLNFQGKHFTLLRLSSITLQ 193
Query: 59 DNNLTRLSGDISL----LINLRTLDISNNKLRYLPSEI----GDLIYLRELCLNNNNLRT 110
D N L + ++ TLD+S N + ++ ++ L L+N+
Sbjct: 194 DMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMG 253
Query: 111 LPYELGKLFQIQILGLHGNPLSK 133
+ G S
Sbjct: 254 SSFGHTNFKDPDNFTFKGLEASG 276
Score = 38.6 bits (90), Expect = 3e-04
Identities = 17/135 (12%), Positives = 40/135 (29%), Gaps = 24/135 (17%)
Query: 16 LINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTRLSGDI---SLL 72
L +L L + +N ++ + N+ L + N + + +
Sbjct: 128 LTSLEMLVLRDNNIKKIQPA-SFFLNM-------RRFHVLDLTFNKVKSICEEDLLNFQG 179
Query: 73 INLRTLDISNNKLRYLPSEIGD---------LIYLRELCLNNNNLRTLP----YELGKLF 119
+ L +S+ L+ + + L L+ N + ++
Sbjct: 180 KHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGT 239
Query: 120 QIQILGLHGNPLSKD 134
+IQ L L +
Sbjct: 240 KIQSLILSNSYNMGS 254
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity,
antibody, T cell, leucine-rich repeat, immune system;
1.70A {Petromyzon marinus} PDB: 3m18_A
Length = 251
Score = 62.8 bits (153), Expect = 9e-13
Identities = 42/134 (31%), Positives = 60/134 (44%), Gaps = 13/134 (9%)
Query: 2 NDNNLTRLS-GDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDN 60
L LS L L L++ N+L+ L + G +L T L L + +N
Sbjct: 43 QSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSA--GVFDDL-------TELGTLGLANN 93
Query: 61 NLTRLSGDI-SLLINLRTLDISNNKLRYLPSEIGD-LIYLRELCLNNNNLRTLPYEL-GK 117
L L + L L L + N+L+ LPS + D L L+EL LN N L+++P K
Sbjct: 94 QLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDK 153
Query: 118 LFQIQILGLHGNPL 131
L +Q L L N L
Sbjct: 154 LTNLQTLSLSTNQL 167
Score = 60.9 bits (148), Expect = 5e-12
Identities = 45/136 (33%), Positives = 65/136 (47%), Gaps = 19/136 (13%)
Query: 2 NDNNLTRLSGDI-SLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDN 60
+ N L LS + L L TL ++NN+L LP + D T L LY+ N
Sbjct: 67 DYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGV-------FD--HLTQLDKLYLGGN 117
Query: 61 NLTRL-SGDISLLINLRTLDISNNKLRYLPSEIGD-LIYLRELCLNNNNLRTLPYE---- 114
L L SG L L+ L ++ N+L+ +P+ D L L+ L L+ N L+++P+
Sbjct: 118 QLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDR 177
Query: 115 LGKLFQIQILGLHGNP 130
LGKL I L GN
Sbjct: 178 LGKLQTIT---LFGNQ 190
Score = 52.0 bits (125), Expect = 6e-09
Identities = 36/116 (31%), Positives = 55/116 (47%), Gaps = 12/116 (10%)
Query: 20 RTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTRLSGDI-SLLINLRTL 78
LD+ + L L + L T LT L ++ N L LS + L L TL
Sbjct: 38 EKLDLQSTGLATLSD--ATFRGL-------TKLTWLNLDYNQLQTLSAGVFDDLTELGTL 88
Query: 79 DISNNKLRYLPSEIGD-LIYLRELCLNNNNLRTLPYEL-GKLFQIQILGLHGNPLS 132
++NN+L LP + D L L +L L N L++LP + +L +++ L L+ N L
Sbjct: 89 GLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQ 144
Score = 46.2 bits (110), Expect = 8e-07
Identities = 27/84 (32%), Positives = 37/84 (44%), Gaps = 3/84 (3%)
Query: 53 TALYMNDNNLTRLS-GDISLLINLRTLDISNNKLRYLPSEIGD-LIYLRELCLNNNNLRT 110
L + L LS L L L++ N+L+ L + + D L L L L NN L +
Sbjct: 38 EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLAS 97
Query: 111 LPYEL-GKLFQIQILGLHGNPLSK 133
LP + L Q+ L L GN L
Sbjct: 98 LPLGVFDHLTQLDKLYLGGNQLKS 121
Score = 34.3 bits (79), Expect = 0.009
Identities = 24/85 (28%), Positives = 39/85 (45%), Gaps = 11/85 (12%)
Query: 1 MNDNNLTRL-SGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMND 59
+ N L L SG L L+ L ++ N+L+ +P+ GA L T+L L ++
Sbjct: 114 LGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPA--GAFDKL-------TNLQTLSLST 164
Query: 60 NNLTRLS-GDISLLINLRTLDISNN 83
N L + G L L+T+ + N
Sbjct: 165 NQLQSVPHGAFDRLGKLQTITLFGN 189
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG;
2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Length = 680
Score = 63.5 bits (155), Expect = 1e-12
Identities = 28/137 (20%), Positives = 57/137 (41%), Gaps = 6/137 (4%)
Query: 1 MNDNNLTRLS-GDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMND 59
+++NN+ ++ + L L LD+ +N L L + L +HL L +
Sbjct: 487 LSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIY-FLKGLSHLHILNLES 545
Query: 60 NNLTRLSGD-ISLLINLRTLDISNNKLRYLPSEI-GDLIYLRELCLNNNNLRTLPYEL-- 115
N + + L L+ +D+ N L LP+ + + + L+ L L N + ++ ++
Sbjct: 546 NGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFG 605
Query: 116 GKLFQIQILGLHGNPLS 132
+ L + NP
Sbjct: 606 PAFRNLTELDMRFNPFD 622
Score = 62.3 bits (152), Expect = 3e-12
Identities = 36/146 (24%), Positives = 56/146 (38%), Gaps = 23/146 (15%)
Query: 1 MNDNNLTRL---SGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYM 57
+ L + L NL LD+SNN + + ++ L L L +
Sbjct: 461 LRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDM---------LEGLEKLEILDL 511
Query: 58 NDNNLTRLSGD---------ISLLINLRTLDISNNKLRYLPSE-IGDLIYLRELCLNNNN 107
NNL RL + L +L L++ +N +P E DL L+ + L NN
Sbjct: 512 QHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNN 571
Query: 108 LRTLPYE-LGKLFQIQILGLHGNPLS 132
L TLP ++ L L N ++
Sbjct: 572 LNTLPASVFNNQVSLKSLNLQKNLIT 597
Score = 60.0 bits (146), Expect = 2e-11
Identities = 30/137 (21%), Positives = 55/137 (40%), Gaps = 13/137 (9%)
Query: 1 MNDNNLTRL-SGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMND 59
+ N L RL + + + L +LD+ N + L E+ + L L +
Sbjct: 32 LTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPEL---------CQKLPMLKVLNLQH 82
Query: 60 NNLTRLS-GDISLLINLRTLDISNNKLRYLPSE-IGDLIYLRELCLNNNNLRTLPYE-LG 116
N L++LS + NL L + +N ++ + + L L L++N L +
Sbjct: 83 NELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQV 142
Query: 117 KLFQIQILGLHGNPLSK 133
+L +Q L L N +
Sbjct: 143 QLENLQELLLSNNKIQA 159
Score = 58.9 bits (143), Expect = 4e-11
Identities = 33/138 (23%), Positives = 62/138 (44%), Gaps = 15/138 (10%)
Query: 1 MNDNNLTRLS-GDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMND 59
+ N L++LS + NL L + +N ++ + + + +L L ++
Sbjct: 80 LQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNP---------FVKQKNLITLDLSH 130
Query: 60 NNLTRLS-GDISLLINLRTLDISNNKLRYLPSE---IGDLIYLRELCLNNNNLRTL-PYE 114
N L+ G L NL+ L +SNNK++ L SE I L++L L++N ++ P
Sbjct: 131 NGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGC 190
Query: 115 LGKLFQIQILGLHGNPLS 132
+ ++ L L+ L
Sbjct: 191 FHAIGRLFGLFLNNVQLG 208
Score = 58.1 bits (141), Expect = 9e-11
Identities = 32/134 (23%), Positives = 64/134 (47%), Gaps = 14/134 (10%)
Query: 2 NDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNN 61
+ LT++ D+ N+ L++++N+LR LP+ + +++ LT+L + N
Sbjct: 12 SHLKLTQVPDDL--PTNITVLNLTHNQLRRLPAA---------NFTRYSQLTSLDVGFNT 60
Query: 62 LTRL-SGDISLLINLRTLDISNNKLRYLPSE-IGDLIYLRELCLNNNNLRTL-PYELGKL 118
+++L L L+ L++ +N+L L + L EL L +N+++ + K
Sbjct: 61 ISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQ 120
Query: 119 FQIQILGLHGNPLS 132
+ L L N LS
Sbjct: 121 KNLITLDLSHNGLS 134
Score = 57.7 bits (140), Expect = 1e-10
Identities = 29/120 (24%), Positives = 48/120 (40%), Gaps = 15/120 (12%)
Query: 17 INLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTRL-SGDISLLINL 75
++ D S+ KL +P ++ T++T L + N L RL + + + L
Sbjct: 4 VSHEVADCSHLKLTQVPDDL------------PTNITVLNLTHNQLRRLPAANFTRYSQL 51
Query: 76 RTLDISNNKLRYL-PSEIGDLIYLRELCLNNNNLRTLP-YELGKLFQIQILGLHGNPLSK 133
+LD+ N + L P L L+ L L +N L L + L L N + K
Sbjct: 52 TSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQK 111
Score = 55.0 bits (133), Expect = 1e-09
Identities = 33/147 (22%), Positives = 49/147 (33%), Gaps = 24/147 (16%)
Query: 1 MNDNNLTRL--SGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMN 58
+ N + + + L N+ + +S NK L L L +
Sbjct: 412 LGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNS---------FALVPSLQRLMLR 462
Query: 59 DNNLTRL---SGDISLLINLRTLDISNNKLRYLPSE-IGDLIYLRELCLNNNNLRTL--- 111
L + L NL LD+SNN + + + + L L L L +NNL L
Sbjct: 463 RVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKH 522
Query: 112 ------PYELGKLFQIQILGLHGNPLS 132
Y L L + IL L N
Sbjct: 523 ANPGGPIYFLKGLSHLHILNLESNGFD 549
Score = 51.2 bits (123), Expect = 2e-08
Identities = 27/155 (17%), Positives = 54/155 (34%), Gaps = 24/155 (15%)
Query: 2 NDNNLTRL-SGDISLLINLRTLDISNNKLRYLPS-------------------EIGAVKN 41
+ +L ++ L L L++ +N + + S + + N
Sbjct: 313 SLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTN 372
Query: 42 LSPDLWQFTHLTALYMNDNNLTRL-SGDISLLINLRTLDISNNKLRYL--PSEIGDLIYL 98
+ + L L + N ++++ S S L +L LD+ N++ E L +
Sbjct: 373 ETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENI 432
Query: 99 RELCLNNNNLRTL-PYELGKLFQIQILGLHGNPLS 132
E+ L+ N L + +Q L L L
Sbjct: 433 FEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALK 467
Score = 48.8 bits (117), Expect = 1e-07
Identities = 29/167 (17%), Positives = 57/167 (34%), Gaps = 24/167 (14%)
Query: 1 MNDNNLTRLSGDISL---LINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYM 57
++++ L+ S L NL LD+S N L + ++ L ++
Sbjct: 229 LSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDS---------FAWLPQLEYFFL 279
Query: 58 NDNNLTRL-SGDISLLINLRTLDISNNKLRYL----------PSEIGDLIYLRELCLNNN 106
NN+ L S + L N+R L++ + + L L L + +N
Sbjct: 280 EYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDN 339
Query: 107 NLRTL-PYELGKLFQIQILGLHGNPLSKDYMKIYNEPNGTQKLLSYL 152
++ + L ++ L L + S + + L L
Sbjct: 340 DIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHIL 386
Score = 46.5 bits (111), Expect = 8e-07
Identities = 24/129 (18%), Positives = 50/129 (38%), Gaps = 19/129 (14%)
Query: 16 LINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTRLSGD-ISLLIN 74
++R L +SN++L + ++T+LT L ++ NNL + D + L
Sbjct: 221 NTSIRNLSLSNSQLSTTSNTTFL-------GLKWTNLTMLDLSYNNLNVVGNDSFAWLPQ 273
Query: 75 LRTLDISNNKLRYL-PSEIGDLIYLRELCLNNNNLRTL----------PYELGKLFQIQI 123
L + N +++L + L +R L L + + + L ++
Sbjct: 274 LEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEH 333
Query: 124 LGLHGNPLS 132
L + N +
Sbjct: 334 LNMEDNDIP 342
Score = 41.1 bits (97), Expect = 6e-05
Identities = 20/118 (16%), Positives = 38/118 (32%), Gaps = 14/118 (11%)
Query: 1 MNDNNLTRLSGD-ISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMND 59
+ N + + L L+ +D+ N L LP+ + L +L +
Sbjct: 543 LESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASV---------FNNQVSLKSLNLQK 593
Query: 60 NNLTRLSGDI--SLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLRTLPYEL 115
N +T + + NL LD+ N I + + + N+ L
Sbjct: 594 NLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWF--VNWINETHTNIPELSSHY 649
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling
protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15
b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Length = 605
Score = 62.4 bits (151), Expect = 3e-12
Identities = 33/133 (24%), Positives = 64/133 (48%), Gaps = 15/133 (11%)
Query: 1 MNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDN 60
N++++ + G I L N+ L ++ NKL ++I + NL +L L++++N
Sbjct: 50 ANNSDIKSVQG-IQYLPNVTKLFLNGNKL----TDIKPLTNL-------KNLGWLFLDEN 97
Query: 61 NLTRLSGDISLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLRTLPYELGKLFQ 120
+ LS + L L++L + +N + + + L L L L NN + + L +L +
Sbjct: 98 KIKDLSS-LKDLKKLKSLSLEHNGISDING-LVHLPQLESLYLGNNKITDIT-VLSRLTK 154
Query: 121 IQILGLHGNPLSK 133
+ L L N +S
Sbjct: 155 LDTLSLEDNQISD 167
Score = 59.4 bits (143), Expect = 3e-11
Identities = 22/133 (16%), Positives = 50/133 (37%), Gaps = 15/133 (11%)
Query: 1 MNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDN 60
+ ++ D ++ + + + + + N++
Sbjct: 6 TVSTPIKQIFPD-DAFAETIKDNLKKKSVTDAVT-----------QNELNSIDQIIANNS 53
Query: 61 NLTRLSGDISLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLRTLPYELGKLFQ 120
++ + G I L N+ L ++ NKL + + +L L L L+ N ++ L L L +
Sbjct: 54 DIKSVQG-IQYLPNVTKLFLNGNKLTDI-KPLTNLKNLGWLFLDENKIKDLS-SLKDLKK 110
Query: 121 IQILGLHGNPLSK 133
++ L L N +S
Sbjct: 111 LKSLSLEHNGISD 123
Score = 46.3 bits (109), Expect = 1e-06
Identities = 22/146 (15%), Positives = 52/146 (35%), Gaps = 13/146 (8%)
Query: 1 MNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDN 60
+ +N +T ++ +S L L TL + +N++ + L T L LY++ N
Sbjct: 138 LGNNKITDITV-LSRLTKLDTLSLEDNQISDIVP-----------LAGLTKLQNLYLSKN 185
Query: 61 NLTRLSGDISLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLRTLPYELGKLFQ 120
+++ L ++ L NL L++ + + P + + N + P +
Sbjct: 186 HISDLRA-LAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIISDDGD 244
Query: 121 IQILGLHGNPLSKDYMKIYNEPNGTQ 146
+ + + +
Sbjct: 245 YEKPNVKWHLPEFTNEVSFIFYQPVT 270
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis,
effector protein, virulence factor, toxin; 2.10A
{Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Length = 454
Score = 62.3 bits (152), Expect = 3e-12
Identities = 37/139 (26%), Positives = 58/139 (41%), Gaps = 15/139 (10%)
Query: 2 NDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTA------- 54
N+ L+ L +L +L S N L LP ++K+L D L+
Sbjct: 79 NNLGLSSLPELPP---HLESLVASCNSLTELPELPQSLKSLLVDNNNLKALSDLPPLLEY 135
Query: 55 LYMNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLRTLPYE 114
L +++N L +L ++ L+ +D+ NN L+ LP L + NN L LP E
Sbjct: 136 LGVSNNQLEKLP-ELQNSSFLKIIDVDNNSLKKLPDLPPS---LEFIAAGNNQLEELP-E 190
Query: 115 LGKLFQIQILGLHGNPLSK 133
L L + + N L K
Sbjct: 191 LQNLPFLTAIYADNNSLKK 209
Score = 60.8 bits (148), Expect = 9e-12
Identities = 31/127 (24%), Positives = 51/127 (40%), Gaps = 13/127 (10%)
Query: 1 MNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLS---------PDLWQFTH 51
+N L L ++ L L + NN L+ LP +++++ P+L
Sbjct: 180 AGNNQLEELP-ELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPF 238
Query: 52 LTALYMNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLRTL 111
LT +Y ++N L L +L L++ +N L LP L +L + L L
Sbjct: 239 LTTIYADNNLLKTLPDLPP---SLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSEL 295
Query: 112 PYELGKL 118
P L L
Sbjct: 296 PPNLYYL 302
Score = 55.8 bits (135), Expect = 5e-10
Identities = 25/121 (20%), Positives = 42/121 (34%), Gaps = 7/121 (5%)
Query: 2 NDNNLTRLSGDISLLINLRTLDISNNKL-RYLPSEIGAVKNLSPDL---WQFTHLTALYM 57
+ +NLT + + + + + ++ R P G + ++ L +
Sbjct: 19 HSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELEL 78
Query: 58 NDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLRTLPYELGK 117
N+ L+ L +L +L S N L LP L L N L LP L
Sbjct: 79 NNLGLSSLPELPP---HLESLVASCNSLTELPELPQSLKSLLVDNNNLKALSDLPPLLEY 135
Query: 118 L 118
L
Sbjct: 136 L 136
Score = 53.8 bits (130), Expect = 2e-09
Identities = 31/127 (24%), Positives = 45/127 (35%), Gaps = 20/127 (15%)
Query: 1 MNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLS---------PDLWQFTH 51
+ DN LT L +L LD+S N L + L+ DL
Sbjct: 264 VRDNYLTDLPELPQ---SLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLP--PS 318
Query: 52 LTALYMNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLRTL 111
L L +++N L L L L S N L +P + L++L + N LR
Sbjct: 319 LEELNVSNNKLIELPALPP---RLERLIASFNHLAEVPELPQN---LKQLHVEYNPLREF 372
Query: 112 PYELGKL 118
P +
Sbjct: 373 PDIPESV 379
Score = 51.9 bits (125), Expect = 1e-08
Identities = 21/121 (17%), Positives = 38/121 (31%), Gaps = 7/121 (5%)
Query: 16 LINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALY----MNDNNLTRLSGDISL 71
L+ ++ L +P E VK+ + ++ + L
Sbjct: 10 NTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCL 69
Query: 72 LINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLRTLPYELGKLFQIQILGLHGNPL 131
L+++N L LP L L + N+L LP L + + + L
Sbjct: 70 DRQAHELELNNLGLSSLPELPPH---LESLVASCNSLTELPELPQSLKSLLVDNNNLKAL 126
Query: 132 S 132
S
Sbjct: 127 S 127
Score = 51.5 bits (124), Expect = 1e-08
Identities = 26/155 (16%), Positives = 48/155 (30%), Gaps = 28/155 (18%)
Query: 1 MNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFT-------HLT 53
+ N + L L +L L++SNNKL LP+ ++ L +L
Sbjct: 304 ASSNEIRSLCD---LPPSLEELNVSNNKLIELPALPPRLERLIASFNHLAEVPELPQNLK 360
Query: 54 ALYMNDNNLTRLSGDISLLI----------------NLRTLDISNNKLRYLPSEIGDLIY 97
L++ N L + NL+ L + N LR P +
Sbjct: 361 QLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLREFPDIPESVED 420
Query: 98 LRELCLNNNNLRTLPYELGKLFQIQILGLHGNPLS 132
LR + + + +++ +
Sbjct: 421 LR--MNSERVVDPYEFAHETTDKLEDDVFEHHHHH 453
Score = 48.8 bits (117), Expect = 1e-07
Identities = 26/150 (17%), Positives = 50/150 (33%), Gaps = 26/150 (17%)
Query: 1 MNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDN 60
+++N L L L L S N L +P +L L++ N
Sbjct: 324 VSNNKLIELPALPP---RLERLIASFNHLAEVPELPQ-------------NLKQLHVEYN 367
Query: 61 NLTRLSGDISLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLRTLPYELGKLFQ 120
L + +LR N+ L +P + L++L + N LR P +
Sbjct: 368 PLREFPDIPESVEDLR----MNSHLAEVPELPQN---LKQLHVETNPLREFPDIPESV-- 418
Query: 121 IQILGLHGNPLSKDYMKIYNEPNGTQKLLS 150
+ L ++ + Y + + + +
Sbjct: 419 -EDLRMNSERVVDPYEFAHETTDKLEDDVF 447
Score = 38.8 bits (91), Expect = 3e-04
Identities = 21/106 (19%), Positives = 37/106 (34%), Gaps = 17/106 (16%)
Query: 42 LSPDLWQFTHLTALYMNDNNLTRLSGDISLLINLRTLDISNNKL-RYLPSEIGDLIY--- 97
++P T L + +NLT + + + + + ++ R P G+
Sbjct: 3 INPRNVSNTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAV 62
Query: 98 ----------LRELCLNNNNLRTLPYELGKLFQIQILGLHGNPLSK 133
EL LNN L +LP L + L N L++
Sbjct: 63 SRLRDCLDRQAHELELNNLGLSSLPELPPHL---ESLVASCNSLTE 105
Score = 27.7 bits (62), Expect = 2.0
Identities = 6/48 (12%), Positives = 18/48 (37%)
Query: 87 YLPSEIGDLIYLRELCLNNNNLRTLPYELGKLFQIQILGLHGNPLSKD 134
++ +L+E +++NL +P E + + ++
Sbjct: 2 FINPRNVSNTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERN 49
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte
receptors, VLR, leucine-rich repeat, LRR adaptive
immunity, immune system; HET: DR2; 1.67A {Petromyzon
marinus}
Length = 229
Score = 60.9 bits (148), Expect = 4e-12
Identities = 46/135 (34%), Positives = 65/135 (48%), Gaps = 18/135 (13%)
Query: 2 NDNNLTRLS-GDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDN 60
+DN +T+L G LINL+ L + +N+L LP + D T LT L + N
Sbjct: 48 HDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGV-------FD--SLTQLTVLDLGTN 98
Query: 61 NLTRL-SGDISLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLRTLPYE----L 115
LT L S L++L+ L + NKL LP I L +L L L+ N L+++P+ L
Sbjct: 99 QLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRL 158
Query: 116 GKLFQIQILGLHGNP 130
L L GNP
Sbjct: 159 SSLTHAY---LFGNP 170
Score = 58.2 bits (141), Expect = 3e-11
Identities = 34/114 (29%), Positives = 53/114 (46%), Gaps = 11/114 (9%)
Query: 20 RTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTRLSGDI-SLLINLRTL 78
+ L + +N++ L G +L +L LY+ N L L + L L L
Sbjct: 43 QILYLHDNQITKLEP--GVFDSL-------INLKELYLGSNQLGALPVGVFDSLTQLTVL 93
Query: 79 DISNNKLRYLPSEIGD-LIYLRELCLNNNNLRTLPYELGKLFQIQILGLHGNPL 131
D+ N+L LPS + D L++L+EL + N L LP + +L + L L N L
Sbjct: 94 DLGTNQLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQL 147
Score = 48.9 bits (117), Expect = 6e-08
Identities = 33/108 (30%), Positives = 43/108 (39%), Gaps = 11/108 (10%)
Query: 1 MNDNNLTRLSGDI-SLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMND 59
+ N L L + L L LD+ N+L LPS L HL L+M
Sbjct: 71 LGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPS--AVFDRL-------VHLKELFMCC 121
Query: 60 NNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGD-LIYLRELCLNNN 106
N LT L I L +L L + N+L+ +P D L L L N
Sbjct: 122 NKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGN 169
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid
recognition, receptor immunity, lipid binding,
glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO
MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Length = 606
Score = 61.6 bits (150), Expect = 4e-12
Identities = 27/132 (20%), Positives = 46/132 (34%), Gaps = 10/132 (7%)
Query: 4 NNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLT 63
N +S L +L LD+S N L + + L L ++ N
Sbjct: 337 MNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGT-------NSLRHLDLSFNGAI 389
Query: 64 RLSGDISLLINLRTLDISNNKLRYLP--SEIGDLIYLRELCLNNNNLRTLPYE-LGKLFQ 120
+S + L L+ LD ++ L+ + S L L L ++ N + L
Sbjct: 390 IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTS 449
Query: 121 IQILGLHGNPLS 132
+ L + GN
Sbjct: 450 LNTLKMAGNSFK 461
Score = 59.3 bits (144), Expect = 3e-11
Identities = 31/138 (22%), Positives = 53/138 (38%), Gaps = 12/138 (8%)
Query: 1 MNDNNLTRLS-GDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMND 59
++ N G L +L TL ++ N + LS T+LT L ++
Sbjct: 431 ISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNT--------LSNVFANTTNLTFLDLSK 482
Query: 60 NNLTRLSGDI-SLLINLRTLDISNNKLRYLPSE-IGDLIYLRELCLNNNNLRTLPYELGK 117
L ++S + L L+ L++S+N L +L S L L L + N + T L
Sbjct: 483 CQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQH 542
Query: 118 LF-QIQILGLHGNPLSKD 134
+ L N ++
Sbjct: 543 FPKSLAFFNLTNNSVACI 560
Score = 57.0 bits (138), Expect = 2e-10
Identities = 26/133 (19%), Positives = 51/133 (38%), Gaps = 14/133 (10%)
Query: 3 DNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNL 62
D L+++ DI + + +D+S N L+ L S F+ L L ++ +
Sbjct: 20 DQKLSKVPDDIPS--STKNIDLSFNPLKILKSY---------SFSNFSELQWLDLSRCEI 68
Query: 63 TRL-SGDISLLINLRTLDISNNKLRYLPSE-IGDLIYLRELCLNNNNLRTLPYE-LGKLF 119
+ L +L L ++ N ++ L L L L +L +G+L
Sbjct: 69 ETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLI 128
Query: 120 QIQILGLHGNPLS 132
++ L + N +
Sbjct: 129 TLKKLNVAHNFIH 141
Score = 56.6 bits (137), Expect = 3e-10
Identities = 27/142 (19%), Positives = 48/142 (33%), Gaps = 14/142 (9%)
Query: 4 NNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDL----------WQFTHLT 53
N+ + L N+ + ++ ++YL K S + L
Sbjct: 272 NDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLKQFPTLDLPFLK 331
Query: 54 ALYMNDNNLTRLSGDISLLINLRTLDISNNKLRYLPS---EIGDLIYLRELCLNNNNLRT 110
+L + N + +S L +L LD+S N L + LR L L+ N
Sbjct: 332 SLTLTMNKGS-ISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII 390
Query: 111 LPYELGKLFQIQILGLHGNPLS 132
+ L ++Q L + L
Sbjct: 391 MSANFMGLEELQHLDFQHSTLK 412
Score = 56.2 bits (136), Expect = 3e-10
Identities = 37/134 (27%), Positives = 55/134 (41%), Gaps = 14/134 (10%)
Query: 4 NNLTRL-SGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNL 62
N L L S S L+ LD+S ++ + A L HL+ L + N +
Sbjct: 42 NPLKILKSYSFSNFSELQWLDLSRCEIETIED--KAWHGL-------HHLSNLILTGNPI 92
Query: 63 TRLS-GDISLLINLRTLDISNNKLRYLPSE-IGDLIYLRELCLNNNNLRT--LPYELGKL 118
S G S L +L L KL L S IG LI L++L + +N + + LP L
Sbjct: 93 QSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNL 152
Query: 119 FQIQILGLHGNPLS 132
+ + L N +
Sbjct: 153 TNLVHVDLSYNYIQ 166
Score = 53.1 bits (128), Expect = 4e-09
Identities = 22/116 (18%), Positives = 42/116 (36%), Gaps = 15/116 (12%)
Query: 21 TLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTRL-SGDISLLINLRTLD 79
T + KL +P +I + + ++ N L L S S L+ LD
Sbjct: 15 TYQCMDQKLSKVPDDI------------PSSTKNIDLSFNPLKILKSYSFSNFSELQWLD 62
Query: 80 ISNNKLRYLPSE-IGDLIYLRELCLNNNNLRTLPYE-LGKLFQIQILGLHGNPLSK 133
+S ++ + + L +L L L N +++ L ++ L L+
Sbjct: 63 LSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLAS 118
Score = 52.7 bits (127), Expect = 6e-09
Identities = 25/140 (17%), Positives = 50/140 (35%), Gaps = 16/140 (11%)
Query: 1 MNDNNLTRLSGD-ISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMND 59
+ L L I LI L+ L++++N + L T+L + ++
Sbjct: 111 AVETKLASLESFPIGQLITLKKLNVAHNFIHSCK--------LPAYFSNLTNLVHVDLSY 162
Query: 60 NNLTRLSGDI-----SLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLRT--LP 112
N + ++ + +LD+S N + ++ + I L EL L N + +
Sbjct: 163 NYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMK 222
Query: 113 YELGKLFQIQILGLHGNPLS 132
L L + + L
Sbjct: 223 TCLQNLAGLHVHRLILGEFK 242
Score = 42.7 bits (101), Expect = 1e-05
Identities = 25/133 (18%), Positives = 52/133 (39%), Gaps = 12/133 (9%)
Query: 2 NDNNLTRLSGDI-SLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDN 60
++ NL I L ++ + +I L+ +++A+ +
Sbjct: 243 DERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLA-------NVSAMSLAGV 295
Query: 61 NLTRLSGDISLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLRTLPYELGKLFQ 120
++ L D+ ++L I +L+ P+ DL +L+ L L N ++ ++ L
Sbjct: 296 SIKYLE-DVPKHFKWQSLSIIRCQLKQFPT--LDLPFLKSLTLTMNKG-SISFKKVALPS 351
Query: 121 IQILGLHGNPLSK 133
+ L L N LS
Sbjct: 352 LSYLDLSRNALSF 364
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG;
1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Length = 313
Score = 61.0 bits (149), Expect = 6e-12
Identities = 33/146 (22%), Positives = 56/146 (38%), Gaps = 21/146 (14%)
Query: 8 RLSGDI----SLLINLRTLDISNNKLR-YLPSEIGAVKNLSPDLW----QFT-------- 50
LSG + S L NL + N++ +P G+ L + + T
Sbjct: 136 ALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFA 195
Query: 51 --HLTALYMNDNNLT-RLSGDISLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNN 107
+L + ++ N L S N + + ++ N L + ++G L L L NN
Sbjct: 196 NLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNR 255
Query: 108 LR-TLPYELGKLFQIQILGLHGNPLS 132
+ TLP L +L + L + N L
Sbjct: 256 IYGTLPQGLTQLKFLHSLNVSFNNLC 281
Score = 59.5 bits (145), Expect = 2e-11
Identities = 28/128 (21%), Positives = 46/128 (35%), Gaps = 15/128 (11%)
Query: 11 GDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTRLSGDI- 69
+ + LD+S L + L +L LY+ N L G I
Sbjct: 44 DTDTQTYRVNNLDLSGLNLP-------KPYPIPSSLANLPYLNFLYIGGIN--NLVGPIP 94
Query: 70 ---SLLINLRTLDISNNKLR-YLPSEIGDLIYLRELCLNNNNLR-TLPYELGKLFQIQIL 124
+ L L L I++ + +P + + L L + N L TLP + L + +
Sbjct: 95 PAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGI 154
Query: 125 GLHGNPLS 132
GN +S
Sbjct: 155 TFDGNRIS 162
Score = 56.4 bits (137), Expect = 2e-10
Identities = 31/151 (20%), Positives = 54/151 (35%), Gaps = 21/151 (13%)
Query: 2 NDNNLT-RLSGDISLLINLRTLDISNNKLR-YLPSEIGAVKNLS--------------PD 45
NNL + I+ L L L I++ + +P + +K L P
Sbjct: 85 GINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPS 144
Query: 46 LWQFTHLTALYMNDNNLT-RLSGDISLLINLRT-LDISNNKLR-YLPSEIGDLIYLRELC 102
+ +L + + N ++ + L T + IS N+L +P +L L +
Sbjct: 145 ISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVD 203
Query: 103 LNNNNLR-TLPYELGKLFQIQILGLHGNPLS 132
L+ N L G Q + L N L+
Sbjct: 204 LSRNMLEGDASVLFGSDKNTQKIHLAKNSLA 234
Score = 50.6 bits (122), Expect = 2e-08
Identities = 35/129 (27%), Positives = 55/129 (42%), Gaps = 17/129 (13%)
Query: 8 RLSGDISLLI---NLRTLDISNNKLR-YLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLT 63
RL+G I NL +D+S N L G+ KN +++ N+L
Sbjct: 185 RLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNT----------QKIHLAKNSLA 234
Query: 64 RLSGDISLLINLRTLDISNNKLR-YLPSEIGDLIYLRELCLNNNNLR-TLPYELGKLFQI 121
G + L NL LD+ NN++ LP + L +L L ++ NNL +P + G L +
Sbjct: 235 FDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP-QGGNLQRF 293
Query: 122 QILGLHGNP 130
+ N
Sbjct: 294 DVSAYANNK 302
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein
binding, plasma; 1.70A {Listeria monocytogenes} PDB:
3rfj_A
Length = 272
Score = 60.4 bits (147), Expect = 7e-12
Identities = 43/133 (32%), Positives = 68/133 (51%), Gaps = 13/133 (9%)
Query: 2 NDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNN 61
N L + + L NL L ++ N+L+ LP+ G L T+L L + +N
Sbjct: 71 GGNKLHDI-SALKELTNLTYLILTGNQLQSLPN--GVFDKL-------TNLKELVLVENQ 120
Query: 62 LTRLSGDI-SLLINLRTLDISNNKLRYLPSEIGD-LIYLRELCLNNNNLRTLPYEL-GKL 118
L L + L NL L++++N+L+ LP + D L L EL L+ N L++LP + KL
Sbjct: 121 LQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKL 180
Query: 119 FQIQILGLHGNPL 131
Q++ L L+ N L
Sbjct: 181 TQLKDLRLYQNQL 193
Score = 55.0 bits (133), Expect = 6e-10
Identities = 44/136 (32%), Positives = 62/136 (45%), Gaps = 19/136 (13%)
Query: 2 NDNNLTRLSGDI-SLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDN 60
N L L + L NL+ L + N+L+ LP + + T+LT L + N
Sbjct: 93 TGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFD---------KLTNLTYLNLAHN 143
Query: 61 NLTRL-SGDISLLINLRTLDISNNKLRYLPSEIGD-LIYLRELCLNNNNLRTLPYE---- 114
L L G L NL LD+S N+L+ LP + D L L++L L N L+++P
Sbjct: 144 QLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDR 203
Query: 115 LGKLFQIQILGLHGNP 130
L L I LH NP
Sbjct: 204 LTSLQYIW---LHDNP 216
Score = 38.1 bits (89), Expect = 5e-04
Identities = 22/129 (17%), Positives = 47/129 (36%), Gaps = 15/129 (11%)
Query: 20 RTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTRLSGDISLLINLRTLD 79
T+ +S + P + F + ++T L ++ +
Sbjct: 1 ETITVSTPIKQIFPDDA------------FAETIKANLKKKSVTDAVTQNEL-NSIDQII 47
Query: 80 ISNNKLRYLPSEIGDLIYLRELCLNNNNLRTLPYELGKLFQIQILGLHGNPLSKDYMKIY 139
+N+ ++ + I L +R L L N L + L +L + L L GN L ++
Sbjct: 48 ANNSDIKSVQG-IQYLPNVRYLALGGNKLHDISA-LKELTNLTYLILTGNQLQSLPNGVF 105
Query: 140 NEPNGTQKL 148
++ ++L
Sbjct: 106 DKLTNLKEL 114
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto;
diacyl lipopeptide, innate immunity, Leu repeat, cell
membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG;
2.90A {Mus musculus}
Length = 562
Score = 61.0 bits (148), Expect = 8e-12
Identities = 30/131 (22%), Positives = 56/131 (42%), Gaps = 7/131 (5%)
Query: 1 MNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDN 60
+ N L + N+ +L+ + L L S + L ++ N
Sbjct: 384 LQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWA-----ESILVLNLSSN 438
Query: 61 NLTRLSGDISLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLRTLPYE-LGKLF 119
LT L ++ LD+ NN++ +P ++ L L+EL + +N L+++P +L
Sbjct: 439 MLTGSVFR-CLPPKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLKSVPDGVFDRLT 497
Query: 120 QIQILGLHGNP 130
+Q + LH NP
Sbjct: 498 SLQYIWLHDNP 508
Score = 54.5 bits (131), Expect = 1e-09
Identities = 28/119 (23%), Positives = 49/119 (41%), Gaps = 14/119 (11%)
Query: 18 NLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTRLSGDI-SLLINLR 76
+ L +S N + L D+ + L L ++ N + L + +L
Sbjct: 53 RTKALSLSQNSISELRMP---------DISFLSELRVLRLSHNRIRSLDFHVFLFNQDLE 103
Query: 77 TLDISNNKLRYLPSEIGDLIYLRELCLNNNNLRTLPY--ELGKLFQIQILGLHGNPLSK 133
LD+S+N+L+ + + LR L L+ N+ LP E G L ++ LGL +
Sbjct: 104 YLDVSHNRLQNISC--CPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQ 160
Score = 54.5 bits (131), Expect = 1e-09
Identities = 36/160 (22%), Positives = 59/160 (36%), Gaps = 14/160 (8%)
Query: 1 MNDNNLTRL-SGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMND 59
++ N+++ L DIS L LR L +S+N++R L L L ++
Sbjct: 59 LSQNSISELRMPDISFLSELRVLRLSHNRIRSLDF--HVFLFN-------QDLEYLDVSH 109
Query: 60 NNLTRLSGDISLLINLRTLDISNNKLRYLP--SEIGDLIYLRELCLNNNNLRTLPYELGK 117
N L +S + +LR LD+S N LP E G+L L L L+ R L
Sbjct: 110 NRLQNISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVA 167
Query: 118 LFQIQILGLHGNPLSKDYMKIYNEPNGTQKLLSYLLDSLQ 157
+ + L + + +L +
Sbjct: 168 HLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNS 207
Score = 53.0 bits (127), Expect = 5e-09
Identities = 27/137 (19%), Positives = 52/137 (37%), Gaps = 17/137 (12%)
Query: 1 MNDNNLTRL-SGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMND 59
N T S L L+TL + N L+ ++++L D
Sbjct: 360 FTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVAL----------MTKNMSSLETLD 409
Query: 60 NNLTRLSGDI-----SLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLRTLPYE 114
+L L+ + ++ L++S+N L ++ L L+NN + ++P +
Sbjct: 410 VSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFR-CLPPKVKVLDLHNNRIMSIPKD 468
Query: 115 LGKLFQIQILGLHGNPL 131
+ L +Q L + N L
Sbjct: 469 VTHLQALQELNVASNQL 485
Score = 43.7 bits (103), Expect = 6e-06
Identities = 16/150 (10%), Positives = 40/150 (26%), Gaps = 11/150 (7%)
Query: 5 NLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTR 64
+ + + L +L + N + + F + ++ ++
Sbjct: 293 DREEFTYSETALKSLMIEHVKNQVFLFSKEALY---------SVFAEMNIKMLSISDTPF 343
Query: 65 L-SGDISLLINLRTLDISNNKLRYLPSEIGD-LIYLRELCLNNNNLRTLPYELGKLFQIQ 122
+ + L+ + N + L L+ L L N L+ +
Sbjct: 344 IHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMS 403
Query: 123 ILGLHGNPLSKDYMKIYNEPNGTQKLLSYL 152
L L+ Y+ + + L
Sbjct: 404 SLETLDVSLNSLNSHAYDRTCAWAESILVL 433
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1,
lipopeptide, innate immunity, glycoPro immune response,
inflammatory response, leucine-rich repeat membrane,
receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Length = 520
Score = 59.9 bits (145), Expect = 2e-11
Identities = 36/151 (23%), Positives = 63/151 (41%), Gaps = 21/151 (13%)
Query: 1 MNDNNLTRL-SGDISLLINLRTLDISNNKLRYLPSEIGAVKNLS---------------- 43
++N LT + L L TL + N+L+ L +
Sbjct: 331 FSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDE 390
Query: 44 --PDLWQFTHLTALYMNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGDLIYLREL 101
D L +L M+ N LT L ++ LD+ +NK++ +P ++ L L+EL
Sbjct: 391 KKGDCSWTKSLLSLNMSSNILTDTIFR-CLPPRIKVLDLHSNKIKSIPKQVVKLEALQEL 449
Query: 102 CLNNNNLRTLPYE-LGKLFQIQILGLHGNPL 131
+ +N L+++P +L +Q + LH NP
Sbjct: 450 NVASNQLKSVPDGIFDRLTSLQKIWLHTNPW 480
Score = 55.3 bits (133), Expect = 8e-10
Identities = 38/150 (25%), Positives = 61/150 (40%), Gaps = 16/150 (10%)
Query: 4 NNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLT 63
N L + D+S L+IS N + L + D+ + L L ++ N +
Sbjct: 10 NGLIHVPKDLSQ--KTTILNISQNYISELWTS---------DILSLSKLRILIISHNRIQ 58
Query: 64 RLSGDI-SLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLRTLPY--ELGKLFQ 120
L + L LD+S+NKL + + L+ L L+ N LP E G + Q
Sbjct: 59 YLDISVFKFNQELEYLDLSHNKLVKISC--HPTVNLKHLDLSFNAFDALPICKEFGNMSQ 116
Query: 121 IQILGLHGNPLSKDYMKIYNEPNGTQKLLS 150
++ LGL L K + N ++ LL
Sbjct: 117 LKFLGLSTTHLEKSSVLPIAHLNISKVLLV 146
Score = 52.6 bits (126), Expect = 6e-09
Identities = 28/114 (24%), Positives = 48/114 (42%), Gaps = 16/114 (14%)
Query: 21 TLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTRL-SGDISLLINLRTLD 79
+D S N L ++P ++ T L ++ N ++ L + DI L LR L
Sbjct: 4 LVDRSKNGLIHVPKDL------------SQKTTILNISQNYISELWTSDILSLSKLRILI 51
Query: 80 ISNNKLRYLPSEI-GDLIYLRELCLNNNNLRTLPYELGKLFQIQILGLHGNPLS 132
IS+N+++YL + L L L++N L + ++ L L N
Sbjct: 52 ISHNRIQYLDISVFKFNQELEYLDLSHNKLVKIS--CHPTVNLKHLDLSFNAFD 103
Score = 52.2 bits (125), Expect = 1e-08
Identities = 34/138 (24%), Positives = 58/138 (42%), Gaps = 14/138 (10%)
Query: 1 MNDNNLTRL-SGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMND 59
++ N ++ L + DI L LR L IS+N+++YL + L L ++
Sbjct: 28 ISQNYISELWTSDILSLSKLRILIISHNRIQYLDISV---------FKFNQELEYLDLSH 78
Query: 60 NNLTRLSGDISLLINLRTLDISNNKLRYLP--SEIGDLIYLRELCLNNNNLRTLPYELGK 117
N L ++S +NL+ LD+S N LP E G++ L+ L L+ +L
Sbjct: 79 NKLVKISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIA 136
Query: 118 LFQIQILGLHGNPLSKDY 135
I + L +
Sbjct: 137 HLNISKVLLVLGETYGEK 154
Score = 47.2 bits (112), Expect = 5e-07
Identities = 29/136 (21%), Positives = 56/136 (41%), Gaps = 20/136 (14%)
Query: 16 LINLRTLDISNNKLRYLPSE-----------------IGAVKNLSPDLWQFTHLTALYMN 58
+ LD SNN L E + + ++ Q L L ++
Sbjct: 323 ISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDIS 382
Query: 59 DNNLTRLS--GDISLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLRTLPYELG 116
N+++ GD S +L +L++S+N L ++ L L++N ++++P ++
Sbjct: 383 QNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCL-PPRIKVLDLHSNKIKSIPKQVV 441
Query: 117 KLFQIQILGLHGNPLS 132
KL +Q L + N L
Sbjct: 442 KLEALQELNVASNQLK 457
Score = 41.0 bits (96), Expect = 6e-05
Identities = 27/127 (21%), Positives = 43/127 (33%), Gaps = 14/127 (11%)
Query: 16 LINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTRLS-GDISLLIN 74
L L + ++ + S I F+++ + + S +
Sbjct: 275 LKALSIHQVVSDVFGFPQSYI---------YEIFSNMNIKNFTVSGTRMVHMLCPSKISP 325
Query: 75 LRTLDISNNKLRYLPSEI-GDLIYLRELCLNNNNLRTLPYELG---KLFQIQILGLHGNP 130
LD SNN L E G L L L L N L+ L ++ +Q L + N
Sbjct: 326 FLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNS 385
Query: 131 LSKDYMK 137
+S D K
Sbjct: 386 VSYDEKK 392
Score = 36.0 bits (83), Expect = 0.003
Identities = 25/139 (17%), Positives = 46/139 (33%), Gaps = 14/139 (10%)
Query: 1 MNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDN 60
N+ R+ + + ISN KL+ + + T L AL ++
Sbjct: 232 TTWNSFIRILQLVWHT-TVWYFSISNVKLQGQL-------DFRDFDYSGTSLKALSIHQV 283
Query: 61 NLTRLSGDISL----LINLRTLDISNNKLRYLPSEIGD-LIYLRELCLNNNNLRTLPYE- 114
S N+ + + + R + + L +NN L +E
Sbjct: 284 VSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFEN 343
Query: 115 LGKLFQIQILGLHGNPLSK 133
G L +++ L L N L +
Sbjct: 344 CGHLTELETLILQMNQLKE 362
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2
related L recognition, receptor, innate immunity,
glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus
musculus} PDB: 3b2d_A* 3rg1_A*
Length = 606
Score = 59.6 bits (145), Expect = 2e-11
Identities = 26/135 (19%), Positives = 52/135 (38%), Gaps = 9/135 (6%)
Query: 1 MNDNNLTRLS-GDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMND 59
++ + L S L L+ L++ N + + L L L ++
Sbjct: 432 LSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQ------KTNSLQTLGRLEILVLSF 485
Query: 60 NNLTRLSGDI-SLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLRTLPYE-LGK 117
+L+ + + L + +D+S+N+L E + L L +N++ + L
Sbjct: 486 CDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIYLNLASNHISIILPSLLPI 545
Query: 118 LFQIQILGLHGNPLS 132
L Q + + L NPL
Sbjct: 546 LSQQRTINLRQNPLD 560
Score = 58.1 bits (141), Expect = 7e-11
Identities = 33/138 (23%), Positives = 57/138 (41%), Gaps = 15/138 (10%)
Query: 1 MNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDN 60
+ +L+ L + L L+ L +S NK L F LT L + N
Sbjct: 285 LTATHLSELPSGLVGLSTLKKLVLSANKFENLCQIS---------ASNFPSLTHLSIKGN 335
Query: 61 NL--TRLSGDISLLINLRTLDISNNKLRYLPS---EIGDLIYLRELCLNNNNLRTLPYE- 114
+G + L NLR LD+S++ + ++ +L +L+ L L+ N +L E
Sbjct: 336 TKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEA 395
Query: 115 LGKLFQIQILGLHGNPLS 132
+ Q+++L L L
Sbjct: 396 FKECPQLELLDLAFTRLK 413
Score = 57.7 bits (140), Expect = 1e-10
Identities = 21/134 (15%), Positives = 44/134 (32%), Gaps = 14/134 (10%)
Query: 2 NDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNN 61
+ L + G + + L+ S N L + + + +LT L +
Sbjct: 20 ENLGLNEIPGTLPN--STECLEFSFNVLPTIQNT---------TFSRLINLTFLDLTRCQ 68
Query: 62 LTRL-SGDISLLINLRTLDISNNKLRYLPSEI-GDLIYLRELCLNNNNLRTL-PYELGKL 118
+ + L TL ++ N L ++ L+ L + ++ L
Sbjct: 69 IYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQ 128
Query: 119 FQIQILGLHGNPLS 132
++ L L N +S
Sbjct: 129 KTLESLYLGSNHIS 142
Score = 56.9 bits (138), Expect = 2e-10
Identities = 22/136 (16%), Positives = 52/136 (38%), Gaps = 13/136 (9%)
Query: 1 MNDNNLTRL-SGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMND 59
+ N L + + S LINL LD++ ++ ++ + L L +
Sbjct: 40 FSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDT---------FQSQHRLDTLVLTA 90
Query: 60 NNLTRLS-GDISLLINLRTLDISNNKLRYLPSE-IGDLIYLRELCLNNNNLRTLPY-ELG 116
N L ++ +S L+ L + + + + L L L +N++ ++ +
Sbjct: 91 NPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGF 150
Query: 117 KLFQIQILGLHGNPLS 132
++++L N +
Sbjct: 151 PTEKLKVLDFQNNAIH 166
Score = 55.8 bits (135), Expect = 4e-10
Identities = 19/137 (13%), Positives = 46/137 (33%), Gaps = 11/137 (8%)
Query: 1 MNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDN 60
+N N++ + ++L+ + + + + L D
Sbjct: 186 LNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQ-------SLWLGTFEDM 238
Query: 61 NLTRLSGDI---SLLINLRTLDISNNKLRYLPSEI-GDLIYLRELCLNNNNLRTLPYELG 116
+ +S + +++ ++++ + + S L+EL L +L LP L
Sbjct: 239 DDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLV 298
Query: 117 KLFQIQILGLHGNPLSK 133
L ++ L L N
Sbjct: 299 GLSTLKKLVLSANKFEN 315
Score = 55.4 bits (134), Expect = 7e-10
Identities = 22/135 (16%), Positives = 49/135 (36%), Gaps = 12/135 (8%)
Query: 2 NDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNN 61
+D +++ + +++ ++++ + + S F+ L L + +
Sbjct: 239 DDEDISPAVFEGLCEMSVESINLQKHYFFNISSNT---------FHCFSGLQELDLTATH 289
Query: 62 LTRLSGDISLLINLRTLDISNNKLRYLPSE-IGDLIYLRELCLNNNNLRTL--PYELGKL 118
L+ L + L L+ L +S NK L + L L + N R L L
Sbjct: 290 LSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENL 349
Query: 119 FQIQILGLHGNPLSK 133
++ L L + +
Sbjct: 350 ENLRELDLSHDDIET 364
Score = 55.4 bits (134), Expect = 7e-10
Identities = 25/139 (17%), Positives = 51/139 (36%), Gaps = 15/139 (10%)
Query: 1 MNDNNLTRL-SGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMND 59
++ N L + L LD++ +L+ ++ +NL L L ++
Sbjct: 383 LSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQ-SPFQNL-------HLLKVLNLSH 434
Query: 60 NNLTRLS-GDISLLINLRTLDISNNKLRYL----PSEIGDLIYLRELCLNNNNLRTLP-Y 113
+ L S L L+ L++ N + + L L L L+ +L ++ +
Sbjct: 435 SLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQH 494
Query: 114 ELGKLFQIQILGLHGNPLS 132
L + + L N L+
Sbjct: 495 AFTSLKMMNHVDLSHNRLT 513
Score = 53.9 bits (130), Expect = 3e-09
Identities = 21/134 (15%), Positives = 43/134 (32%), Gaps = 10/134 (7%)
Query: 2 NDNNLTRLSGDISL-LINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDN 60
N L G + + +L + + + + ++ + +
Sbjct: 212 TQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDIS-------PAVFEGLCEMSVESINLQKH 264
Query: 61 NLTRLSGDI-SLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLRTLP-YELGKL 118
+S + L+ LD++ L LPS + L L++L L+ N L
Sbjct: 265 YFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNF 324
Query: 119 FQIQILGLHGNPLS 132
+ L + GN
Sbjct: 325 PSLTHLSIKGNTKR 338
Score = 51.6 bits (124), Expect = 1e-08
Identities = 22/117 (18%), Positives = 40/117 (34%), Gaps = 15/117 (12%)
Query: 20 RTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTRL-SGDISLLINLRTL 78
+T + N L +P + L + N L + + S LINL L
Sbjct: 15 KTYNCENLGLNEIPGTL------------PNSTECLEFSFNVLPTIQNTTFSRLINLTFL 62
Query: 79 DISNNKLRYLPSE-IGDLIYLRELCLNNNNLRTLPYE-LGKLFQIQILGLHGNPLSK 133
D++ ++ ++ + L L L N L + L ++ L +S
Sbjct: 63 DLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISS 119
Score = 51.2 bits (123), Expect = 2e-08
Identities = 15/140 (10%), Positives = 41/140 (29%), Gaps = 16/140 (11%)
Query: 1 MNDNNLTRLSGD-ISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMND 59
++ + + L +L + +N + + + L L +
Sbjct: 112 FIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPK---------GFPTEKLKVLDFQN 162
Query: 60 NNLTRLS-GDISLLINLR--TLDISNNKLRYLPSEIGDLIYLRELCLNNNNLRTLPYE-- 114
N + LS D+S L +L+++ N + + D + L + ++
Sbjct: 163 NAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGL 222
Query: 115 -LGKLFQIQILGLHGNPLSK 133
+ + +
Sbjct: 223 KNSTIQSLWLGTFEDMDDED 242
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2,
lipopeptide, innate immunity, glycoprotein, immune RES
inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Length = 353
Score = 58.2 bits (141), Expect = 6e-11
Identities = 24/137 (17%), Positives = 52/137 (37%), Gaps = 10/137 (7%)
Query: 1 MNDNNLTRLS-GDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMND 59
++ ++L + + N+ L + + L V S + L ++
Sbjct: 181 IDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLE--IFVDVTSSV--ECLELRDTDLDT 236
Query: 60 NNLTRLSGDISL----LINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLRTLPYE- 114
+ + LS + R + I++ L + + + L EL + N L+++P
Sbjct: 237 FHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGI 296
Query: 115 LGKLFQIQILGLHGNPL 131
+L +Q + LH NP
Sbjct: 297 FDRLTSLQKIWLHTNPW 313
Score = 55.9 bits (135), Expect = 4e-10
Identities = 33/138 (23%), Positives = 53/138 (38%), Gaps = 15/138 (10%)
Query: 2 NDNNLTRLSGDI-SLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDN 60
N + + D S L +L LD+S N L L S K L + LT L + N
Sbjct: 84 TSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSS--SWFKPL-------SSLTFLNLLGN 134
Query: 61 NLTRLSGDI--SLLINLRTLDISNN-KLRYLPSEI-GDLIYLRELCLNNNNLRTLPYE-L 115
L S L L+ L + N + + L +L EL ++ ++L++ + L
Sbjct: 135 PYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSL 194
Query: 116 GKLFQIQILGLHGNPLSK 133
+ + L LH
Sbjct: 195 KSIQNVSHLILHMKQHIL 212
Score = 55.5 bits (134), Expect = 6e-10
Identities = 19/142 (13%), Positives = 51/142 (35%), Gaps = 20/142 (14%)
Query: 2 NDNNLTRLS-GDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDN 60
N + T++ D + L L L+I + L+ ++K++ +++ L ++
Sbjct: 158 NMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEP--KSLKSI-------QNVSHLILHMK 208
Query: 61 NLTRLS-GDISLLINLRTLDISNNKLRYLPSE---------IGDLIYLRELCLNNNNLRT 110
L + + ++ L++ + L + R + + + +L
Sbjct: 209 QHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQ 268
Query: 111 LPYELGKLFQIQILGLHGNPLS 132
+ L ++ + L N L
Sbjct: 269 VMKLLNQISGLLELEFSRNQLK 290
Score = 54.0 bits (130), Expect = 2e-09
Identities = 31/113 (27%), Positives = 52/113 (46%), Gaps = 13/113 (11%)
Query: 2 NDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNN 61
+ +L + ++ +++LD+SNN++ Y+ + DL + +L AL + N
Sbjct: 39 SSGSLNSIPSGLT--EAVKSLDLSNNRITYISNS---------DLQRCVNLQALVLTSNG 87
Query: 62 LTRLSGDI-SLLINLRTLDISNNKLRYLPSEI-GDLIYLRELCLNNNNLRTLP 112
+ + D S L +L LD+S N L L S L L L L N +TL
Sbjct: 88 INTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLG 140
Score = 34.7 bits (80), Expect = 0.007
Identities = 15/90 (16%), Positives = 30/90 (33%), Gaps = 15/90 (16%)
Query: 2 NDNNLTRLSGDISL----LINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYM 57
+ + + LS + R + I++ L + L Q + L L
Sbjct: 235 DTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVM----------KLLNQISGLLELEF 284
Query: 58 NDNNLTRLSGDI-SLLINLRTLDISNNKLR 86
+ N L + I L +L+ + + N
Sbjct: 285 SRNQLKSVPDGIFDRLTSLQKIWLHTNPWD 314
>2wfh_A SLIT homolog 2 protein C-product; developmental protein,
neurogenesis, splicing, glycoprotein, leucine-rich
repeat, disulfide bond, differentiation; 1.80A {Homo
sapiens}
Length = 193
Score = 56.9 bits (138), Expect = 6e-11
Identities = 26/82 (31%), Positives = 45/82 (54%), Gaps = 2/82 (2%)
Query: 53 TALYMNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGD-LIYLRELCLNNNNLRTL 111
T LY++ N T + ++S +L +D+SNN++ L ++ + L L L+ N LR +
Sbjct: 34 TELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCI 93
Query: 112 PYEL-GKLFQIQILGLHGNPLS 132
P L +++L LHGN +S
Sbjct: 94 PPRTFDGLKSLRLLSLHGNDIS 115
Score = 53.5 bits (129), Expect = 1e-09
Identities = 32/135 (23%), Positives = 56/135 (41%), Gaps = 40/135 (29%)
Query: 2 NDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNN 61
+ N T + ++S +L +D+SNN++ L ++ F+++T
Sbjct: 39 DGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQS------------FSNMT-------- 78
Query: 62 LTRLSGDISLLINLRTLDISNNKLRYLPSEIGD-LIYLRELCLNNNNLRTLPY----ELG 116
L TL +S N+LR +P D L LR L L+ N++ +P +L
Sbjct: 79 ------------QLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLS 126
Query: 117 KLFQIQILGLHGNPL 131
L + + NPL
Sbjct: 127 ALSHLA---IGANPL 138
>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat,
glycoprotein, immune response, inflamma response, innate
immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO
MYR NAG GCS; 3.10A {Homo sapiens}
Length = 605
Score = 58.1 bits (141), Expect = 8e-11
Identities = 36/138 (26%), Positives = 56/138 (40%), Gaps = 15/138 (10%)
Query: 1 MNDNNLTRLS--GDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMN 58
+NL ++S L NL LDIS+ R + I + L L M
Sbjct: 403 FQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGI---------FNGLSSLEVLKMA 453
Query: 59 DNNLTR--LSGDISLLINLRTLDISNNKLRYL-PSEIGDLIYLRELCLNNNNLRTL-PYE 114
N+ L + L NL LD+S +L L P+ L L+ L +++NN +L +
Sbjct: 454 GNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFP 513
Query: 115 LGKLFQIQILGLHGNPLS 132
L +Q+L N +
Sbjct: 514 YKCLNSLQVLDYSLNHIM 531
Score = 57.3 bits (139), Expect = 2e-10
Identities = 32/137 (23%), Positives = 56/137 (40%), Gaps = 14/137 (10%)
Query: 1 MNDNNLTRL-SGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMND 59
++ N L L S L+ LD+S +++ + +HL+ L +
Sbjct: 35 LSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGA---------YQSLSHLSTLILTG 85
Query: 60 NNLTRLS-GDISLLINLRTLDISNNKLRYL-PSEIGDLIYLRELCLNNNNLRTL--PYEL 115
N + L+ G S L +L+ L L L IG L L+EL + +N +++ P
Sbjct: 86 NPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYF 145
Query: 116 GKLFQIQILGLHGNPLS 132
L ++ L L N +
Sbjct: 146 SNLTNLEHLDLSSNKIQ 162
Score = 55.8 bits (135), Expect = 5e-10
Identities = 29/134 (21%), Positives = 57/134 (42%), Gaps = 14/134 (10%)
Query: 2 NDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNN 61
+ N ++ ++ + + LD+S N LR+L S + F L L ++
Sbjct: 15 MELNFYKIPDNLP--FSTKNLDLSFNPLRHLG---------SYSFFSFPELQVLDLSRCE 63
Query: 62 LTRL-SGDISLLINLRTLDISNNKLRYL-PSEIGDLIYLRELCLNNNNLRTL-PYELGKL 118
+ + G L +L TL ++ N ++ L L L++L NL +L + +G L
Sbjct: 64 IQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHL 123
Query: 119 FQIQILGLHGNPLS 132
++ L + N +
Sbjct: 124 KTLKELNVAHNLIQ 137
Score = 53.9 bits (130), Expect = 2e-09
Identities = 27/133 (20%), Positives = 51/133 (38%), Gaps = 10/133 (7%)
Query: 4 NNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLT 63
+N + L +L LD+S N L + + T L L ++ N +
Sbjct: 334 SNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGT-------TSLKYLDLSFNGVI 386
Query: 64 RLSGDISLLINLRTLDISNNKLRYL--PSEIGDLIYLRELCLNNNNLRTL-PYELGKLFQ 120
+S + L L LD ++ L+ + S L L L +++ + R L
Sbjct: 387 TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSS 446
Query: 121 IQILGLHGNPLSK 133
+++L + GN +
Sbjct: 447 LEVLKMAGNSFQE 459
Score = 52.0 bits (125), Expect = 9e-09
Identities = 25/146 (17%), Positives = 46/146 (31%), Gaps = 16/146 (10%)
Query: 2 NDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEI----------GAVKNLSPDLWQFTH 51
+ R+ D S + L++ N K P+ +
Sbjct: 290 VSVTIERVK-DFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPS 348
Query: 52 LTALYMNDNNLTRL---SGDISLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNL 108
L L ++ N L+ S +L+ LD+S N + + S L L L ++NL
Sbjct: 349 LEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNL 408
Query: 109 RTLPYE--LGKLFQIQILGLHGNPLS 132
+ + L + L +
Sbjct: 409 KQMSEFSVFLSLRNLIYLDISHTHTR 434
Score = 46.9 bits (112), Expect = 6e-07
Identities = 29/160 (18%), Positives = 59/160 (36%), Gaps = 17/160 (10%)
Query: 1 MNDNNLTRLSGD-ISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMND 59
+ NL L I L L+ L++++N ++ L T+L L ++
Sbjct: 107 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFK--------LPEYFSNLTNLEHLDLSS 158
Query: 60 NNLTRLS-GDISLLINLR----TLDISNNKLRYLPSEIGDLIYLRELCLNNNNLRT--LP 112
N + + D+ +L + +LD+S N + ++ I L +L L NN +
Sbjct: 159 NKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMK 218
Query: 113 YELGKLFQIQILGLHGNPLSKDYMKIYNEPNGTQKLLSYL 152
+ L +++ L + + + L L
Sbjct: 219 TCIQGLAGLEVHRLVLGEFR-NEGNLEKFDKSALEGLCNL 257
Score = 46.2 bits (110), Expect = 9e-07
Identities = 21/116 (18%), Positives = 37/116 (31%), Gaps = 15/116 (12%)
Query: 21 TLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTRL-SGDISLLINLRTLD 79
T +P + L ++ N L L S L+ LD
Sbjct: 11 TYQCMELNFYKIPDNL------------PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLD 58
Query: 80 ISNNKLRYL-PSEIGDLIYLRELCLNNNNLRTL-PYELGKLFQIQILGLHGNPLSK 133
+S +++ + L +L L L N +++L L +Q L L+
Sbjct: 59 LSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLAS 114
Score = 44.6 bits (106), Expect = 4e-06
Identities = 30/132 (22%), Positives = 52/132 (39%), Gaps = 9/132 (6%)
Query: 2 NDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNN 61
N+ NL + D S L L L I +L YL + ++ T++++ +
Sbjct: 239 NEGNLEKF--DKSALEGLCNLTIEEFRLAYLDYYLD---DIIDLFNCLTNVSSFSLVSVT 293
Query: 62 LTRLSGDISLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLRTLPYELGKLFQI 121
+ R+ D S + L++ N K P+ L L+ L +N + L +
Sbjct: 294 IERVK-DFSYNFGWQHLELVNCKFGQFPTLK--LKSLKRLTFTSNKG-GNAFSEVDLPSL 349
Query: 122 QILGLHGNPLSK 133
+ L L N LS
Sbjct: 350 EFLDLSRNGLSF 361
Score = 43.9 bits (104), Expect = 6e-06
Identities = 27/113 (23%), Positives = 38/113 (33%), Gaps = 14/113 (12%)
Query: 1 MNDNNLTR--LSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMN 58
M N+ L + L NL LD+S +L L + L L M+
Sbjct: 452 MAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTA---------FNSLSSLQVLNMS 502
Query: 59 DNNLTRLSGD-ISLLINLRTLDISNNKLRYLPSEI--GDLIYLRELCLNNNNL 108
NN L L +L+ LD S N + + L L L N+
Sbjct: 503 HNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF 555
Score = 36.9 bits (86), Expect = 0.002
Identities = 22/156 (14%), Positives = 43/156 (27%), Gaps = 28/156 (17%)
Query: 1 MNDNNLTRLSGDISLLINLRTLDISNNKLRY--LPSEIGAVKNLS--------------- 43
++ N + + I L L + NN + + I + L
Sbjct: 184 LSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNL 243
Query: 44 --PDLWQFTHLTALYMNDNNLTRLS-------GDISLLINLRTLDISNNKLRYLPSEIGD 94
D L L + + L L + L N+ + + + + +
Sbjct: 244 EKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKD-FSY 302
Query: 95 LIYLRELCLNNNNLRTLP-YELGKLFQIQILGLHGN 129
+ L L N P +L L ++ G
Sbjct: 303 NFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGG 338
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell
WALL attached, leucine rich repeat; 1.5A {Listeria
monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A*
1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Length = 466
Score = 57.7 bits (140), Expect = 1e-10
Identities = 35/132 (26%), Positives = 56/132 (42%), Gaps = 15/132 (11%)
Query: 1 MNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDN 60
+ +N ++ L+ +S L L L + N++ + L T LT L +N+N
Sbjct: 250 LANNQISNLAP-LSGLTKLTELKLGANQISNISP-----------LAGLTALTNLELNEN 297
Query: 61 NLTRLSGDISLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLRTLPYELGKLFQ 120
L +S IS L NL L + N + + S + L L+ L NN + + L L
Sbjct: 298 QLEDISP-ISNLKNLTYLTLYFNNISDI-SPVSSLTKLQRLFFYNNKVSDVS-SLANLTN 354
Query: 121 IQILGLHGNPLS 132
I L N +S
Sbjct: 355 INWLSAGHNQIS 366
Score = 56.5 bits (137), Expect = 3e-10
Identities = 40/143 (27%), Positives = 62/143 (43%), Gaps = 17/143 (11%)
Query: 3 DNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLS------------PDLWQFT 50
N +T L ++ L L LDIS+NK+ + + + NL L T
Sbjct: 164 GNQVTDLKP-LANLTTLERLDISSNKVSDISV-LAKLTNLESLIATNNQISDITPLGILT 221
Query: 51 HLTALYMNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLRT 110
+L L +N N L + ++ L NL LD++NN++ L + L L EL L N +
Sbjct: 222 NLDELSLNGNQLKDIGT-LASLTNLTDLDLANNQISNLA-PLSGLTKLTELKLGANQISN 279
Query: 111 LPYELGKLFQIQILGLHGNPLSK 133
+ L L + L L+ N L
Sbjct: 280 IS-PLAGLTALTNLELNENQLED 301
Score = 55.7 bits (135), Expect = 4e-10
Identities = 26/152 (17%), Positives = 50/152 (32%), Gaps = 15/152 (9%)
Query: 1 MNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLS------------PDLWQ 48
+N+N L +S IS L NL L + N + + S + ++ L L
Sbjct: 294 LNENQLEDISP-ISNLKNLTYLTLYFNNISDI-SPVSSLTKLQRLFFYNNKVSDVSSLAN 351
Query: 49 FTHLTALYMNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNL 108
T++ L N ++ L+ ++ L + L +++ P + + N
Sbjct: 352 LTNINWLSAGHNQISDLTP-LANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGA 410
Query: 109 RTLPYELGKLFQIQILGLHGNPLSKDYMKIYN 140
P + + N S Y
Sbjct: 411 LIAPATISDGGSYTEPDITWNLPSYTNEVSYT 442
Score = 55.4 bits (134), Expect = 6e-10
Identities = 24/132 (18%), Positives = 49/132 (37%), Gaps = 15/132 (11%)
Query: 2 NDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNN 61
D + ++ D + L + + S +T L +
Sbjct: 10 QDTPINQIFTD-TALAEKMKTVLGKTNVTDTVS-----------QTDLDQVTTLQADRLG 57
Query: 62 LTRLSGDISLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLRTLPYELGKLFQI 121
+ + G + L NL ++ SNN+L + + +L L ++ +NNN + + L L +
Sbjct: 58 IKSIDG-VEYLNNLTQINFSNNQLTDIT-PLKNLTKLVDILMNNNQIADIT-PLANLTNL 114
Query: 122 QILGLHGNPLSK 133
L L N ++
Sbjct: 115 TGLTLFNNQITD 126
Score = 55.4 bits (134), Expect = 7e-10
Identities = 29/131 (22%), Positives = 55/131 (41%), Gaps = 15/131 (11%)
Query: 2 NDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNN 61
+ + + G + L NL ++ SNN+L + L T L + MN+N
Sbjct: 54 DRLGIKSIDG-VEYLNNLTQINFSNNQLTDITP-----------LKNLTKLVDILMNNNQ 101
Query: 62 LTRLSGDISLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLRTLPYELGKLFQI 121
+ ++ ++ L NL L + NN++ + + +L L L L++N + + L L +
Sbjct: 102 IADITP-LANLTNLTGLTLFNNQITDIDP-LKNLTNLNRLELSSNTISDIS-ALSGLTSL 158
Query: 122 QILGLHGNPLS 132
Q L
Sbjct: 159 QQLSFGNQVTD 169
Score = 53.0 bits (128), Expect = 4e-09
Identities = 33/145 (22%), Positives = 65/145 (44%), Gaps = 18/145 (12%)
Query: 1 MNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLS------------PDLWQ 48
++ N ++ +S +S L +L+ L N P + + L L +
Sbjct: 141 LSSNTISDISA-LSGLTSLQQLSFGNQVTDLKP--LANLTTLERLDISSNKVSDISVLAK 197
Query: 49 FTHLTALYMNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNL 108
T+L +L +N ++ ++ + +L NL L ++ N+L+ + + + L L +L L NN +
Sbjct: 198 LTNLESLIATNNQISDITP-LGILTNLDELSLNGNQLKDIGT-LASLTNLTDLDLANNQI 255
Query: 109 RTLPYELGKLFQIQILGLHGNPLSK 133
L L L ++ L L N +S
Sbjct: 256 SNLA-PLSGLTKLTELKLGANQISN 279
Score = 52.3 bits (126), Expect = 7e-09
Identities = 26/132 (19%), Positives = 52/132 (39%), Gaps = 15/132 (11%)
Query: 2 NDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNN 61
N+T + L + TL ++ + + +LT + ++N
Sbjct: 32 GKTNVTDTVS-QTDLDQVTTLQADRLGIKSIDG-----------VEYLNNLTQINFSNNQ 79
Query: 62 LTRLSGDISLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLRTLPYELGKLFQI 121
LT ++ + L L + ++NN++ + + +L L L L NN + + L L +
Sbjct: 80 LTDITP-LKNLTKLVDILMNNNQIADIT-PLANLTNLTGLTLFNNQITDID-PLKNLTNL 136
Query: 122 QILGLHGNPLSK 133
L L N +S
Sbjct: 137 NRLELSSNTISD 148
Score = 45.7 bits (109), Expect = 1e-06
Identities = 22/132 (16%), Positives = 42/132 (31%), Gaps = 12/132 (9%)
Query: 1 MNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDN 60
+N ++ +S ++ L N+ L +N++ L L T +T L +ND
Sbjct: 338 FYNNKVSDVSS-LANLTNINWLSAGHNQISDLTP-----------LANLTRITQLGLNDQ 385
Query: 61 NLTRLSGDISLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLRTLPYELGKLFQ 120
T + +++ + P+ I D E + N Q
Sbjct: 386 AWTNAPVNYKANVSIPNTVKNVTGALIAPATISDGGSYTEPDITWNLPSYTNEVSYTFSQ 445
Query: 121 IQILGLHGNPLS 132
+G S
Sbjct: 446 PVTIGKGTTTFS 457
Score = 34.9 bits (81), Expect = 0.006
Identities = 11/81 (13%), Positives = 28/81 (34%), Gaps = 3/81 (3%)
Query: 53 TALYMNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLRTLP 112
+A D + ++ D + L + + S DL + L + ++++
Sbjct: 5 SATITQDTPINQIFTD-TALAEKMKTVLGKTNVTDTVS-QTDLDQVTTLQADRLGIKSID 62
Query: 113 YELGKLFQIQILGLHGNPLSK 133
+ L + + N L+
Sbjct: 63 -GVEYLNNLTQINFSNNQLTD 82
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat,
asymmetric homodimer, glycoprotein, immune system; HET:
NAG FUC; 26.00A {Homo sapiens}
Length = 844
Score = 57.1 bits (138), Expect = 2e-10
Identities = 31/137 (22%), Positives = 50/137 (36%), Gaps = 10/137 (7%)
Query: 1 MNDNNLTRLSGD--ISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMN 58
+N N + SGD S +L L + N L+ + +HL LY+N
Sbjct: 433 LNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWET----ELCWDVFEGLSHLQVLYLN 488
Query: 59 DNNLTRLSGDISL-LINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLRTLPYELGK 117
N L L + L LR L +++N+L L L L ++ N L
Sbjct: 489 HNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHND-LPANLEILDISRNQLLAPN--PDV 545
Query: 118 LFQIQILGLHGNPLSKD 134
+ +L + N +
Sbjct: 546 FVSLSVLDITHNKFICE 562
Score = 56.0 bits (135), Expect = 5e-10
Identities = 28/142 (19%), Positives = 56/142 (39%), Gaps = 15/142 (10%)
Query: 1 MNDNNLTRLSGDI---SLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYM 57
+N+ + ++R LD+S+ + L S + L L +
Sbjct: 247 FGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRV---------FETLKDLKVLNL 297
Query: 58 NDNNLTRLSGDI-SLLINLRTLDISNNKLRYLPSEI-GDLIYLRELCLNNNNLRTLPYE- 114
N + +++ + L NL+ L++S N L L S L + + L N++ + +
Sbjct: 298 AYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQT 357
Query: 115 LGKLFQIQILGLHGNPLSKDYM 136
L ++Q L L N L+ +
Sbjct: 358 FKFLEKLQTLDLRDNALTTIHF 379
Score = 55.2 bits (133), Expect = 9e-10
Identities = 27/135 (20%), Positives = 55/135 (40%), Gaps = 16/135 (11%)
Query: 1 MNDNNLTRLSGDI-SLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMND 59
++ + L+ + L +L+ L+++ NK+ + E + +L L ++
Sbjct: 273 LSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEA---------FYGLDNLQVLNLSY 323
Query: 60 NNLTRLSGDI-SLLINLRTLDISNNKLRYLPSEI-GDLIYLRELCLNNNNLRTLPYELGK 117
N L L L + +D+ N + + + L L+ L L +N L T+ +
Sbjct: 324 NLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHF---- 379
Query: 118 LFQIQILGLHGNPLS 132
+ I + L GN L
Sbjct: 380 IPSIPDIFLSGNKLV 394
Score = 55.2 bits (133), Expect = 9e-10
Identities = 31/141 (21%), Positives = 56/141 (39%), Gaps = 18/141 (12%)
Query: 1 MNDNNLTRLSGDISL--LINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMN 58
+++N L L L + +L+ L ++ N+ + + L L++
Sbjct: 408 LSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQ--------TPSENPSLEQLFLG 459
Query: 59 DNNLTRL------SGDISLLINLRTLDISNNKLRYLPSEI-GDLIYLRELCLNNNNLRTL 111
+N L L +L+ L +++N L LP + L LR L LN+N L L
Sbjct: 460 ENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVL 519
Query: 112 PYELGKLFQIQILGLHGNPLS 132
+ ++IL + N L
Sbjct: 520 SHND-LPANLEILDISRNQLL 539
Score = 53.7 bits (129), Expect = 3e-09
Identities = 28/134 (20%), Positives = 55/134 (41%), Gaps = 18/134 (13%)
Query: 1 MNDNNLTRLSGDI-SLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMND 59
+ N + +++ + L NL+ L++S N L L S + + + +
Sbjct: 297 LAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSN---------FYGLPKVAYIDLQK 347
Query: 60 NNLTRLSGDI-SLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLRTLPYELGKL 118
N++ + L L+TLD+ +N L + I + + ++ L+ N L TLP
Sbjct: 348 NHIAIIQDQTFKFLEKLQTLDLRDNAL----TTIHFIPSIPDIFLSGNKLVTLPKI---N 400
Query: 119 FQIQILGLHGNPLS 132
++ L N L
Sbjct: 401 LTANLIHLSENRLE 414
Score = 52.9 bits (127), Expect = 5e-09
Identities = 27/139 (19%), Positives = 46/139 (33%), Gaps = 18/139 (12%)
Query: 1 MNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDN 60
NLT++ ++ L +S N +R + + L L +
Sbjct: 11 YRFCNLTQVPQVLN---TTERLLLSFNYIRTVTAS---------SFPFLEQLQLLELGSQ 58
Query: 61 NLTRL--SGDISLLINLRTLDISNNKLRYLPSEI-GDLIYLRELCLNNNNLRTLPYE--- 114
L NLR LD+ ++K+ +L + L +L EL L L +
Sbjct: 59 YTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGY 118
Query: 115 LGKLFQIQILGLHGNPLSK 133
L + L L N +
Sbjct: 119 FRNLKALTRLDLSKNQIRS 137
Score = 51.3 bits (123), Expect = 2e-08
Identities = 28/143 (19%), Positives = 51/143 (35%), Gaps = 17/143 (11%)
Query: 16 LINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTRLSGD---ISLL 72
L NLR LD+ ++K+ +L + HL L + L+ L
Sbjct: 72 LPNLRILDLGSSKIYFLHPDA---------FQGLFHLFELRLYFCGLSDAVLKDGYFRNL 122
Query: 73 INLRTLDISNNKLRYLPSE--IGDLIYLRELCLNNNNLRTLPYELGKLFQ---IQILGLH 127
L LD+S N++R L G L L+ + ++N + + + Q + L
Sbjct: 123 KALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLA 182
Query: 128 GNPLSKDYMKIYNEPNGTQKLLS 150
N L + + + +
Sbjct: 183 ANSLYSRVSVDWGKCMNPFRNMV 205
Score = 51.0 bits (122), Expect = 2e-08
Identities = 23/147 (15%), Positives = 51/147 (34%), Gaps = 18/147 (12%)
Query: 1 MNDNNLTRLSGDI-SLLINLRTLDISNNKLRYLPSEIGAV----------KNLSPDLWQF 49
++ N L L L + +D+ N + + + N +
Sbjct: 321 LSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFI 380
Query: 50 THLTALYMNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSE--IGDLIYLRELCLNNNN 107
+ ++++ N L L + + + +S N+L L + + +L+ L LN N
Sbjct: 381 PSIPDIFLSGNKLVTLP---KINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNR 437
Query: 108 LRTLPYE--LGKLFQIQILGLHGNPLS 132
+ + + ++ L L N L
Sbjct: 438 FSSCSGDQTPSENPSLEQLFLGENMLQ 464
Score = 50.2 bits (120), Expect = 4e-08
Identities = 31/171 (18%), Positives = 60/171 (35%), Gaps = 21/171 (12%)
Query: 1 MNDNNLTRLSGDI-SLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMND 59
+ + + L D L +L L + L + G +NL LT L ++
Sbjct: 80 LGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNL-------KALTRLDLSK 132
Query: 60 NNLTRL--SGDISLLINLRTLDISNNKLRYLPSEIGD---LIYLRELCLNNNNLRTLP-- 112
N + L L +L+++D S+N++ + + L L N+L +
Sbjct: 133 NQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSV 192
Query: 113 -----YELGKLFQIQILGLHGNPLSKDYMKI-YNEPNGTQKLLSYLLDSLQ 157
+ ++IL + GN + D N + +Q L +
Sbjct: 193 DWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIM 243
Score = 49.0 bits (117), Expect = 1e-07
Identities = 27/125 (21%), Positives = 47/125 (37%), Gaps = 8/125 (6%)
Query: 16 LINLRTLDISNNKLRYLPSEI---GAVKNLSPDLWQFTHLTALYMNDNNLTRLSGDI--- 69
+ L LD+S N + K+ + L H+ +N+ +
Sbjct: 203 NMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAG 262
Query: 70 SLLINLRTLDISNNKLRYLPSEI-GDLIYLRELCLNNNNLRTLPYE-LGKLFQIQILGLH 127
++R LD+S+ + L S + L L+ L L N + + E L +Q+L L
Sbjct: 263 LARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLS 322
Query: 128 GNPLS 132
N L
Sbjct: 323 YNLLG 327
Score = 44.0 bits (104), Expect = 6e-06
Identities = 20/118 (16%), Positives = 38/118 (32%), Gaps = 17/118 (14%)
Query: 20 RTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTRL-SGDISLLINLRTL 78
R L +P + L ++ N + + + L L+ L
Sbjct: 7 RIAFYRFCNLTQVPQVL-------------NTTERLLLSFNYIRTVTASSFPFLEQLQLL 53
Query: 79 DISNNKLRYL--PSEIGDLIYLRELCLNNNNLRTLPYE-LGKLFQIQILGLHGNPLSK 133
++ + +L LR L L ++ + L + LF + L L+ LS
Sbjct: 54 ELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSD 111
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR,
immune system; 1.50A {Eptatretus burgeri}
Length = 208
Score = 55.8 bits (135), Expect = 2e-10
Identities = 42/137 (30%), Positives = 64/137 (46%), Gaps = 19/137 (13%)
Query: 1 MNDNNLTRLS-GDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMND 59
+ N+L L G L +L L + NKL+ LP+ + + T LT L ++
Sbjct: 35 LETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFN---------KLTSLTYLNLST 85
Query: 60 NNLTRL-SGDISLLINLRTLDISNNKLRYLPSEIGD-LIYLRELCLNNNNLRTLPYE--- 114
N L L +G L L+ L ++ N+L+ LP + D L L++L L N L+++P
Sbjct: 86 NQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFD 145
Query: 115 -LGKLFQIQILGLHGNP 130
L L I LH NP
Sbjct: 146 RLTSLQYIW---LHDNP 159
Score = 54.3 bits (131), Expect = 8e-10
Identities = 42/115 (36%), Positives = 62/115 (53%), Gaps = 12/115 (10%)
Query: 20 RTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTRLSGDI-SLLINLRTL 78
LD+ N L+ LP+ G L T LT LY+ N L L + + L +L L
Sbjct: 31 TYLDLETNSLKSLPN--GVFDEL-------TSLTQLYLGGNKLQSLPNGVFNKLTSLTYL 81
Query: 79 DISNNKLRYLPSEIGD-LIYLRELCLNNNNLRTLPYEL-GKLFQIQILGLHGNPL 131
++S N+L+ LP+ + D L L+EL LN N L++LP + KL Q++ L L+ N L
Sbjct: 82 NLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQL 136
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain,
EF-hand domain; 1.8A {Listeria monocytogenes} SCOP:
b.1.18.15 c.10.2.1
Length = 308
Score = 55.5 bits (134), Expect = 4e-10
Identities = 31/132 (23%), Positives = 64/132 (48%), Gaps = 15/132 (11%)
Query: 2 NDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNN 61
+ N L +S I+ L +++TLD+++ ++ + L ++L LY++ N
Sbjct: 93 SGNPLKNVSA-IAGLQSIKTLDLTSTQITDVT-----------PLAGLSNLQVLYLDLNQ 140
Query: 62 LTRLSGDISLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLRTLPYELGKLFQI 121
+T +S ++ L NL+ L I N ++ L + + +L L L ++N + + L L +
Sbjct: 141 ITNISP-LAGLTNLQYLSIGNAQVSDL-TPLANLSKLTTLKADDNKISDIS-PLASLPNL 197
Query: 122 QILGLHGNPLSK 133
+ L N +S
Sbjct: 198 IEVHLKNNQISD 209
Score = 48.9 bits (117), Expect = 9e-08
Identities = 27/133 (20%), Positives = 53/133 (39%), Gaps = 15/133 (11%)
Query: 1 MNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDN 60
+N+T + L + TL + + + +L L + DN
Sbjct: 26 AGKSNVTDTVT-QADLDGITTLSAFGTGVTTIEG-----------VQYLNNLIGLELKDN 73
Query: 61 NLTRLSGDISLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLRTLPYELGKLFQ 120
+T L+ + L + L++S N L+ + S I L ++ L L + + + L L
Sbjct: 74 QITDLAP-LKNLTKITELELSGNPLKNV-SAIAGLQSIKTLDLTSTQITDVT-PLAGLSN 130
Query: 121 IQILGLHGNPLSK 133
+Q+L L N ++
Sbjct: 131 LQVLYLDLNQITN 143
Score = 47.8 bits (114), Expect = 3e-07
Identities = 27/121 (22%), Positives = 53/121 (43%), Gaps = 14/121 (11%)
Query: 1 MNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDN 60
++ N +T +S ++ L NL+ L I N ++ L L + LT L +DN
Sbjct: 136 LDLNQITNISP-LAGLTNLQYLSIGNAQVSDLTP-----------LANLSKLTTLKADDN 183
Query: 61 NLTRLSGDISLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLRTLPYELGKLFQ 120
++ +S ++ L NL + + NN++ + S + + L + L N + P
Sbjct: 184 KISDISP-LASLPNLIEVHLKNNQISDV-SPLANTSNLFIVTLTNQTITNQPVFYNNNLV 241
Query: 121 I 121
+
Sbjct: 242 V 242
Score = 47.0 bits (112), Expect = 4e-07
Identities = 23/132 (17%), Positives = 49/132 (37%), Gaps = 15/132 (11%)
Query: 2 NDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNN 61
+ + D L N + + + + +T L
Sbjct: 5 QPTAINVIFPD-PALANAIKIAAGKSNVTDTVT-----------QADLDGITTLSAFGTG 52
Query: 62 LTRLSGDISLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLRTLPYELGKLFQI 121
+T + G + L NL L++ +N++ L + + +L + EL L+ N L+ + + L I
Sbjct: 53 VTTIEG-VQYLNNLIGLELKDNQITDL-APLKNLTKITELELSGNPLKNVS-AIAGLQSI 109
Query: 122 QILGLHGNPLSK 133
+ L L ++
Sbjct: 110 KTLDLTSTQITD 121
Score = 31.6 bits (72), Expect = 0.088
Identities = 16/111 (14%), Positives = 40/111 (36%), Gaps = 12/111 (10%)
Query: 2 NDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNN 61
+DN ++ +S ++ L NL + + NN++ + L ++L + + +
Sbjct: 181 DDNKISDISP-LASLPNLIEVHLKNNQISDVSP-----------LANTSNLFIVTLTNQT 228
Query: 62 LTRLSGDISLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLRTLP 112
+T + + + + + P+ I D L N +
Sbjct: 229 ITNQPVFYNNNLVVPNVVKGPSGAPIAPATISDNGTYASPNLTWNLTSFIN 279
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance,
leucine-rich repeat glycoprotein, EGF-like domain,
signal protein; 2.8A {Drosophila melanogaster} SCOP:
c.10.2.7
Length = 192
Score = 53.9 bits (130), Expect = 9e-10
Identities = 31/116 (26%), Positives = 56/116 (48%), Gaps = 16/116 (13%)
Query: 21 TLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTRLS--GDISLLINLRTL 78
T+D + L+ +P +I P H T L +NDN L R+S G L +L L
Sbjct: 12 TVDCTGRGLKEIPRDI-------P-----LHTTELLLNDNELGRISSDGLFGRLPHLVKL 59
Query: 79 DISNNKLRYLPSEIGD-LIYLRELCLNNNNLRTLPYEL-GKLFQIQILGLHGNPLS 132
++ N+L + + +++EL L N ++ + ++ L Q++ L L+ N +S
Sbjct: 60 ELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQIS 115
Score = 48.1 bits (115), Expect = 9e-08
Identities = 26/109 (23%), Positives = 49/109 (44%), Gaps = 13/109 (11%)
Query: 2 NDNNLTRLS--GDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMND 59
NDN L R+S G L +L L++ N+L + A + +H+ L + +
Sbjct: 37 NDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEP--NAFEGA-------SHIQELQLGE 87
Query: 60 NNLTRL-SGDISLLINLRTLDISNNKLRYLPSEIGD-LIYLRELCLNNN 106
N + + + L L+TL++ +N++ + + L L L L +N
Sbjct: 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136
Score = 32.7 bits (75), Expect = 0.027
Identities = 16/85 (18%), Positives = 36/85 (42%), Gaps = 11/85 (12%)
Query: 1 MNDNNLTRL-SGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMND 59
+ N LT + +++ L + NK++ + + L L L + D
Sbjct: 61 LKRNQLTGIEPNAFEGASHIQELQLGENKIKEISN--KMFLGL-------HQLKTLNLYD 111
Query: 60 NNLTRLS-GDISLLINLRTLDISNN 83
N ++ + G L +L +L++++N
Sbjct: 112 NQISCVMPGSFEHLNSLTSLNLASN 136
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain,
EF-hand domain; 1.6A {Listeria monocytogenes} SCOP:
b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A*
2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Length = 291
Score = 54.7 bits (132), Expect = 1e-09
Identities = 31/133 (23%), Positives = 60/133 (45%), Gaps = 15/133 (11%)
Query: 1 MNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDN 60
N++++ + G I L N+ L ++ NKL + L +L L++++N
Sbjct: 53 ANNSDIKSVQG-IQYLPNVTKLFLNGNKLTDI-----------KPLANLKNLGWLFLDEN 100
Query: 61 NLTRLSGDISLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLRTLPYELGKLFQ 120
+ LS + L L++L + +N + + + L L L L NN + + L +L +
Sbjct: 101 KVKDLSS-LKDLKKLKSLSLEHNGISDING-LVHLPQLESLYLGNNKITDIT-VLSRLTK 157
Query: 121 IQILGLHGNPLSK 133
+ L L N +S
Sbjct: 158 LDTLSLEDNQISD 170
Score = 52.7 bits (127), Expect = 4e-09
Identities = 29/134 (21%), Positives = 59/134 (44%), Gaps = 15/134 (11%)
Query: 1 MNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDN 60
+++N + LS + L L++L + +N + + L L +LY+ +N
Sbjct: 97 LDENKVKDLSS-LKDLKKLKSLSLEHNGISDING-----------LVHLPQLESLYLGNN 144
Query: 61 NLTRLSGDISLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLRTLPYELGKLFQ 120
+T ++ +S L L TL + +N++ + + L L+ L L+ N++ L L L
Sbjct: 145 KITDITV-LSRLTKLDTLSLEDNQISDI-VPLAGLTKLQNLYLSKNHISDLR-ALAGLKN 201
Query: 121 IQILGLHGNPLSKD 134
+ +L L
Sbjct: 202 LDVLELFSQECLNK 215
Score = 49.7 bits (119), Expect = 5e-08
Identities = 22/132 (16%), Positives = 50/132 (37%), Gaps = 15/132 (11%)
Query: 2 NDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNN 61
+ ++ D ++ + + + + + N+++
Sbjct: 10 VPTPIKQIFSD-DAFAETIKDNLKKKSVTDAVT-----------QNELNSIDQIIANNSD 57
Query: 62 LTRLSGDISLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLRTLPYELGKLFQI 121
+ + G I L N+ L ++ NKL + + +L L L L+ N ++ L L L ++
Sbjct: 58 IKSVQG-IQYLPNVTKLFLNGNKLTDI-KPLANLKNLGWLFLDENKVKDLS-SLKDLKKL 114
Query: 122 QILGLHGNPLSK 133
+ L L N +S
Sbjct: 115 KSLSLEHNGISD 126
Score = 40.4 bits (95), Expect = 9e-05
Identities = 22/109 (20%), Positives = 50/109 (45%), Gaps = 14/109 (12%)
Query: 1 MNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDN 60
+ +N +T ++ +S L L TL + +N++ + L T L LY++ N
Sbjct: 141 LGNNKITDITV-LSRLTKLDTLSLEDNQISDIVP-----------LAGLTKLQNLYLSKN 188
Query: 61 NLTRLSGDISLLINLRTLDISNNKLRYLP-SEIGDLIYLRELCLNNNNL 108
+++ L ++ L NL L++ + + P + +L+ + + +L
Sbjct: 189 HISDLRA-LAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSL 236
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP,
ribonucleoprotein, RNA binding protein/RNA complex;
2.38A {Homo sapiens} SCOP: c.10.2.4
Length = 176
Score = 53.1 bits (128), Expect = 1e-09
Identities = 34/122 (27%), Positives = 54/122 (44%), Gaps = 14/122 (11%)
Query: 16 LINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTRLSGDISLLINL 75
+ R LD+ K I ++NL L A+ +DN + +L G LL L
Sbjct: 18 AVRDRELDLRGYK-------IPVIENLGATL---DQFDAIDFSDNEIRKLDG-FPLLRRL 66
Query: 76 RTLDISNNKLRYLPSEIGD-LIYLRELCLNNNNLRTLP--YELGKLFQIQILGLHGNPLS 132
+TL ++NN++ + + L L EL L NN+L L L L + L + NP++
Sbjct: 67 KTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVT 126
Query: 133 KD 134
Sbjct: 127 NK 128
Score = 42.3 bits (100), Expect = 1e-05
Identities = 19/91 (20%), Positives = 33/91 (36%), Gaps = 2/91 (2%)
Query: 43 SPDLWQFTHLTALYMNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGDLIYLRELC 102
+ L + + + + L +D S+N++R L L L+ L
Sbjct: 12 AAQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLL 70
Query: 103 LNNNNLRTLPYELG-KLFQIQILGLHGNPLS 132
+NNN + + L L + L L N L
Sbjct: 71 VNNNRICRIGEGLDQALPDLTELILTNNSLV 101
Score = 32.3 bits (74), Expect = 0.034
Identities = 21/84 (25%), Positives = 36/84 (42%), Gaps = 13/84 (15%)
Query: 1 MNDNNLTRLSGDI-SLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMND 59
+N+N + R+ + L +L L ++NN L E+G + L+ LT L +
Sbjct: 71 VNNNRICRIGEGLDQALPDLTELILTNNSL----VELGDLDPLA----SLKSLTYLCILR 122
Query: 60 NNLTRLSGD----ISLLINLRTLD 79
N +T I + +R LD
Sbjct: 123 NPVTNKKHYRLYVIYKVPQVRVLD 146
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat
protein, structural genomi center for structural
genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Length = 197
Score = 53.4 bits (129), Expect = 1e-09
Identities = 28/134 (20%), Positives = 58/134 (43%), Gaps = 14/134 (10%)
Query: 2 NDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNN 61
+ N+T L+G I N++ L I+N + + L ++L L + +
Sbjct: 52 ANINVTDLTG-IEYAHNIKDLTINNIHA----TNYNPISGL-------SNLERLRIMGKD 99
Query: 62 LTRLS-GDISLLINLRTLDISNNKLR-YLPSEIGDLIYLRELCLNNNNLRTLPYELGKLF 119
+T ++S L +L LDIS++ + ++I L + + L+ N T L L
Sbjct: 100 VTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLP 159
Query: 120 QIQILGLHGNPLSK 133
+++ L + + +
Sbjct: 160 ELKSLNIQFDGVHD 173
Score = 46.1 bits (110), Expect = 5e-07
Identities = 21/121 (17%), Positives = 45/121 (37%), Gaps = 14/121 (11%)
Query: 16 LINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTRLSGDISLLINL 75
+ +L + ++N V +L+ + ++ L +N+ + T + IS L NL
Sbjct: 43 MNSLTYITLANIN----------VTDLTG-IEYAHNIKDLTINNIHATNYNP-ISGLSNL 90
Query: 76 RTLDISNNKLR-YLPSEIGDLIYLRELCLNNNNLRTLPYE-LGKLFQIQILGLHGNPLSK 133
L I + + L L L ++++ + L ++ + L N
Sbjct: 91 ERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT 150
Query: 134 D 134
D
Sbjct: 151 D 151
Score = 42.6 bits (101), Expect = 9e-06
Identities = 19/86 (22%), Positives = 36/86 (41%), Gaps = 3/86 (3%)
Query: 48 QFTHLTALYMNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNN 107
Q LT + + + N+T L+G I N++ L I+N + I L L L + +
Sbjct: 42 QMNSLTYITLANINVTDLTG-IEYAHNIKDLTINNIHATNY-NPISGLSNLERLRIMGKD 99
Query: 108 LRTLPYE-LGKLFQIQILGLHGNPLS 132
+ + L L + +L + +
Sbjct: 100 VTSDKIPNLSGLTSLTLLDISHSAHD 125
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex,
leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A
{Homo sapiens} PDB: 1xwd_C*
Length = 350
Score = 53.3 bits (128), Expect = 3e-09
Identities = 30/137 (21%), Positives = 52/137 (37%), Gaps = 15/137 (10%)
Query: 2 NDNNLTRLSGDI-SLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDN 60
NNL ++ + L NL+ L ISN +++LP L + DN
Sbjct: 88 KANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVH---------KIHSLQKVLLDIQDN 138
Query: 61 N-LTRLSGDI--SLLINLRTLDISNNKLRYLPSEIGDLIYLRELCL-NNNNLRTLPYE-L 115
+ + + L L ++ N ++ + + + L EL L +NNNL LP +
Sbjct: 139 INIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVF 198
Query: 116 GKLFQIQILGLHGNPLS 132
IL + +
Sbjct: 199 HGASGPVILDISRTRIH 215
Score = 52.1 bits (125), Expect = 7e-09
Identities = 28/134 (20%), Positives = 51/134 (38%), Gaps = 16/134 (11%)
Query: 2 NDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNN 61
++ +T + D+ N L KLR + GA L + ++ N+
Sbjct: 17 QESKVTEIPSDLP--RNAIELRFVLTKLRVIQK--GAFSGF-------GDLEKIEISQND 65
Query: 62 LTRL--SGDISLLINLRTLDISN-NKLRYLPSEI-GDLIYLRELCLNNNNLRTLP-YELG 116
+ + + S L L + I N L Y+ E +L L+ L ++N ++ LP
Sbjct: 66 VLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKI 125
Query: 117 KLFQIQILGLHGNP 130
Q +L + N
Sbjct: 126 HSLQKVLLDIQDNI 139
Score = 44.8 bits (106), Expect = 3e-06
Identities = 31/131 (23%), Positives = 49/131 (37%), Gaps = 18/131 (13%)
Query: 4 NNLTRLSGDI--SLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNN 61
N+ + + L L ++ N ++ + + T L L ++DNN
Sbjct: 139 INIHTIERNSFVGLSFESVILWLNKNGIQEIH----------NSAFNGTQLDELNLSDNN 188
Query: 62 -LTRLSGDI-SLLINLRTLDISNNKLRYLPSEI-GDLIYLRELCLNNNNLRTLPYELGKL 118
L L D+ LDIS ++ LPS +L LR + NL+ LP L KL
Sbjct: 189 NLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRA--RSTYNLKKLPT-LEKL 245
Query: 119 FQIQILGLHGN 129
+ L
Sbjct: 246 VALMEASLTYP 256
Score = 44.0 bits (104), Expect = 5e-06
Identities = 23/121 (19%), Positives = 45/121 (37%), Gaps = 17/121 (14%)
Query: 18 NLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTRL-SGDISLLINLR 76
+ R +K+ +PS++ + L L + G S +L
Sbjct: 10 SNRVFLCQESKVTEIPSDL------------PRNAIELRFVLTKLRVIQKGAFSGFGDLE 57
Query: 77 TLDISNNK-LRYLPSEI-GDLIYLRELCL-NNNNLRTLPYE-LGKLFQIQILGLHGNPLS 132
++IS N L + +++ +L L E+ + NNL + E L +Q L + +
Sbjct: 58 KIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIK 117
Query: 133 K 133
Sbjct: 118 H 118
Score = 37.9 bits (88), Expect = 7e-04
Identities = 16/84 (19%), Positives = 27/84 (32%), Gaps = 13/84 (15%)
Query: 1 MNDNNLTRLSGDI-SLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMND 59
++NNL L D+ LDIS ++ LPS +L L
Sbjct: 185 SDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYG------------LENLKKLRARS 232
Query: 60 NNLTRLSGDISLLINLRTLDISNN 83
+ + L+ L ++
Sbjct: 233 TYNLKKLPTLEKLVALMEASLTYP 256
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell
invasion; 2.05A {Listeria monocytogenes}
Length = 263
Score = 51.6 bits (124), Expect = 9e-09
Identities = 40/133 (30%), Positives = 70/133 (52%), Gaps = 16/133 (12%)
Query: 1 MNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDN 60
+++N+ L+G + NL+ L +S+N++ S++ +K+L T L L +N N
Sbjct: 48 GDNSNIQSLAG-MQFFTNLKELHLSHNQI----SDLSPLKDL-------TKLEELSVNRN 95
Query: 61 NLTRLSGDISLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLRTLPYELGKLFQ 120
L L+G S L L + NN+LR + L L L + NN L+++ LG L +
Sbjct: 96 RLKNLNGIPSA--CLSRLFLDNNELRDT-DSLIHLKNLEILSIRNNKLKSIV-MLGFLSK 151
Query: 121 IQILGLHGNPLSK 133
+++L LHGN ++
Sbjct: 152 LEVLDLHGNEITN 164
Score = 50.0 bits (120), Expect = 4e-08
Identities = 31/133 (23%), Positives = 56/133 (42%), Gaps = 16/133 (12%)
Query: 1 MNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDN 60
+ ++T L L ++ + N+ ++ L + FT+L L+++ N
Sbjct: 26 LGKQSVTDLVS-QKELSGVQNFNGDNSNIQSLAG-----------MQFFTNLKELHLSHN 73
Query: 61 NLTRLSGDISLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLRTLPYELGKLFQ 120
++ LS + L L L ++ N+L+ L L L L+NN LR L L
Sbjct: 74 QISDLSP-LKDLTKLEELSVNRNRLKNL--NGIPSACLSRLFLDNNELRDTD-SLIHLKN 129
Query: 121 IQILGLHGNPLSK 133
++IL + N L
Sbjct: 130 LEILSIRNNKLKS 142
Score = 46.2 bits (110), Expect = 8e-07
Identities = 28/132 (21%), Positives = 52/132 (39%), Gaps = 16/132 (12%)
Query: 2 NDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNN 61
+ ++ D L N ++ + L S + + + +++N
Sbjct: 5 RPTPINQVFPD-PGLANAVKQNLGKQSVTDLVS-----------QKELSGVQNFNGDNSN 52
Query: 62 LTRLSGDISLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLRTLPYELGKLFQI 121
+ L+G + NL+ L +S+N++ L S + DL L EL +N N L+ L +
Sbjct: 53 IQSLAG-MQFFTNLKELHLSHNQISDL-SPLKDLTKLEELSVNRNRLKNL--NGIPSACL 108
Query: 122 QILGLHGNPLSK 133
L L N L
Sbjct: 109 SRLFLDNNELRD 120
Score = 39.2 bits (92), Expect = 2e-04
Identities = 24/114 (21%), Positives = 45/114 (39%), Gaps = 13/114 (11%)
Query: 2 NDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNN 61
++N L + L NL L I NNKL+ + L + L L ++ N
Sbjct: 114 DNNELRDTDS-LIHLKNLEILSIRNNKLKSIVM-----------LGFLSKLEVLDLHGNE 161
Query: 62 LTRLSGDISLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLRTLPYEL 115
+T G ++ L + +D++ K P + +Y+ + + PY +
Sbjct: 162 ITNTGG-LTRLKKVNWIDLTGQKCVNEPVKYQPELYITNTVKDPDGRWISPYYI 214
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY,
crystallography, immune system; 1.55A {Petromyzon
marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Length = 170
Score = 49.5 bits (119), Expect = 3e-08
Identities = 39/116 (33%), Positives = 54/116 (46%), Gaps = 21/116 (18%)
Query: 21 TLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTRL-SGDISLLINLRTLD 79
T+D S L +P+ I P T LY+ DN +T+L G L L LD
Sbjct: 13 TVDCSGKSLASVPTGI-------P-----TTTQVLYLYDNQITKLEPGVFDRLTQLTRLD 60
Query: 80 ISNNKLRYLPSEIGD-LIYLRELCLNNNNLRTLPY----ELGKLFQIQILGLHGNP 130
+ NN+L LP+ + D L L +L LN+N L+++P L L I L NP
Sbjct: 61 LDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIW---LLNNP 113
Score = 38.4 bits (90), Expect = 3e-04
Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Query: 74 NLRTLDISNNKLRYLPSEIGD-LIYLRELCLNNNNLRTLPYEL-GKLFQIQILGLHGNPL 131
+ L + +N++ L + D L L L L+NN L LP + KL Q+ L L+ N L
Sbjct: 31 TTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQL 90
Score = 31.8 bits (73), Expect = 0.053
Identities = 24/65 (36%), Positives = 31/65 (47%), Gaps = 10/65 (15%)
Query: 2 NDNNLTRL-SGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDN 60
DN +T+L G L L LD+ NN+L LP+ G L T LT L +NDN
Sbjct: 38 YDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPA--GVFDKL-------TQLTQLSLNDN 88
Query: 61 NLTRL 65
L +
Sbjct: 89 QLKSI 93
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich
repeat, LRR, system; 2.10A {Petromyzon marinus}
Length = 174
Score = 48.8 bits (117), Expect = 4e-08
Identities = 35/116 (30%), Positives = 59/116 (50%), Gaps = 21/116 (18%)
Query: 21 TLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTRL-SGDISLLINLRTLD 79
++ N +L +P+ I P T L++N+N +T+L G L+NL+ L
Sbjct: 16 LVNCQNIRLASVPAGI-------P-----TDKQRLWLNNNQITKLEPGVFDHLVNLQQLY 63
Query: 80 ISNNKLRYLPSEIGD-LIYLRELCLNNNNLRTLPY----ELGKLFQIQILGLHGNP 130
++NKL +P+ + D L L +L LN+N+L+++P L L I L+ NP
Sbjct: 64 FNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIY---LYNNP 116
Score = 38.0 bits (89), Expect = 3e-04
Identities = 19/60 (31%), Positives = 34/60 (56%), Gaps = 2/60 (3%)
Query: 74 NLRTLDISNNKLRYLPSEIGD-LIYLRELCLNNNNLRTLPYEL-GKLFQIQILGLHGNPL 131
+ + L ++NN++ L + D L+ L++L N+N L +P + KL Q+ L L+ N L
Sbjct: 34 DKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHL 93
Score = 31.8 bits (73), Expect = 0.049
Identities = 23/62 (37%), Positives = 34/62 (54%), Gaps = 10/62 (16%)
Query: 2 NDNNLTRL-SGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDN 60
N+N +T+L G L+NL+ L ++NKL +P+ G L T LT L +NDN
Sbjct: 41 NNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPT--GVFDKL-------TQLTQLDLNDN 91
Query: 61 NL 62
+L
Sbjct: 92 HL 93
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder,
asparagine ladder, virulence factor, solenoid, cell
WALL; 2.70A {Listeria monocytogenes}
Length = 457
Score = 49.7 bits (119), Expect = 6e-08
Identities = 26/115 (22%), Positives = 40/115 (34%), Gaps = 15/115 (13%)
Query: 10 SGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTRLSGDI 69
D++ L LD + L DL Q L LY+N+ LT L D+
Sbjct: 290 ELDVTHNTQLYLLDCQAAGITEL------------DLSQNPKLVYLYLNNTELTEL--DV 335
Query: 70 SLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLRTLPYELGKLFQIQIL 124
S L++L N ++ +G + L T+P E + I
Sbjct: 336 SHNTKLKSLSCVNAHIQDFS-SVGKIPALNNNFEAEGQTITMPKETLTNNSLTIA 389
Score = 49.3 bits (118), Expect = 8e-08
Identities = 31/132 (23%), Positives = 48/132 (36%), Gaps = 17/132 (12%)
Query: 2 NDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNN 61
+ L L +LD N+ + + + + T LT L NN
Sbjct: 27 AFEMQATDTISEEQLATLTSLDCHNSSITDM-----------TGIEKLTGLTKLICTSNN 75
Query: 62 LTRLSGDISLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLRTLPYELGKLFQI 121
+T L D+S NL L +NKL L + L L L + N L L + + +
Sbjct: 76 ITTL--DLSQNTNLTYLACDSNKLTNLD--VTPLTKLTYLNCDTNKLTKLD--VSQNPLL 129
Query: 122 QILGLHGNPLSK 133
L N L++
Sbjct: 130 TYLNCARNTLTE 141
Score = 48.9 bits (117), Expect = 1e-07
Identities = 35/130 (26%), Positives = 52/130 (40%), Gaps = 18/130 (13%)
Query: 4 NNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLT 63
N D++ L TLD S NK+ L D+ Q L L + NN+T
Sbjct: 157 LNKKITKLDVTPQTQLTTLDCSFNKITEL------------DVSQNKLLNRLNCDTNNIT 204
Query: 64 RLSGDISLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLRTLPYELGKLFQIQI 123
+L D++ I L LD S+NKL + + L L + N L L + L ++
Sbjct: 205 KL--DLNQNIQLTFLDCSSNKLTEID--VTPLTQLTYFDCSVNPLTELD--VSTLSKLTT 258
Query: 124 LGLHGNPLSK 133
L L +
Sbjct: 259 LHCIQTDLLE 268
Score = 47.8 bits (114), Expect = 3e-07
Identities = 35/131 (26%), Positives = 54/131 (41%), Gaps = 19/131 (14%)
Query: 2 NDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNN 61
+++++T ++G I L L L ++N + L DL Q T+LT L + N
Sbjct: 50 HNSSITDMTG-IEKLTGLTKLICTSNNITTL------------DLSQNTNLTYLACDSNK 96
Query: 62 LTRLSGDISLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLRTLPYELGKLFQI 121
LT L D++ L L L+ NKL L + L L N L + + Q+
Sbjct: 97 LTNL--DVTPLTKLTYLNCDTNKLTKLD--VSQNPLLTYLNCARNTLTEID--VSHNTQL 150
Query: 122 QILGLHGNPLS 132
L H N
Sbjct: 151 TELDCHLNKKI 161
Score = 47.4 bits (113), Expect = 3e-07
Identities = 32/162 (19%), Positives = 55/162 (33%), Gaps = 39/162 (24%)
Query: 2 NDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNL-----------SPDLWQFT 50
+ NN+T+L D++ I L LD S+NKL + + + L D+ +
Sbjct: 199 DTNNITKL--DLNQNIQLTFLDCSSNKLTEID--VTPLTQLTYFDCSVNPLTELDVSTLS 254
Query: 51 HLTALYMNDNNLTRLS--------------------GDISLLINLRTLDISNNKLRYLPS 90
LT L+ +L + D++ L LD + L
Sbjct: 255 KLTTLHCIQTDLLEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQAAGITELD- 313
Query: 91 EIGDLIYLRELCLNNNNLRTLPYELGKLFQIQILGLHGNPLS 132
+ L L LNN L L + +++ L +
Sbjct: 314 -LSQNPKLVYLYLNNTELTELD--VSHNTKLKSLSCVNAHIQ 352
Score = 47.0 bits (112), Expect = 5e-07
Identities = 35/132 (26%), Positives = 52/132 (39%), Gaps = 19/132 (14%)
Query: 1 MNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDN 60
NN+T L D+S NL L +NKL L + T LT L + N
Sbjct: 71 CTSNNITTL--DLSQNTNLTYLACDSNKLTNLD------------VTPLTKLTYLNCDTN 116
Query: 61 NLTRLSGDISLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLRTLPYELGKLFQ 120
LT+L D+S L L+ + N L + + L EL + N T ++ Q
Sbjct: 117 KLTKL--DVSQNPLLTYLNCARNTLTEID--VSHNTQLTELDCHLNKKITKL-DVTPQTQ 171
Query: 121 IQILGLHGNPLS 132
+ L N ++
Sbjct: 172 LTTLDCSFNKIT 183
Score = 45.4 bits (108), Expect = 2e-06
Identities = 33/130 (25%), Positives = 46/130 (35%), Gaps = 20/130 (15%)
Query: 2 NDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNN 61
+ N +T L D+S L L+ N + L DL Q LT L + N
Sbjct: 178 SFNKITEL--DVSQNKLLNRLNCDTNNITKL------------DLNQNIQLTFLDCSSNK 223
Query: 62 LTRLSGDISLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLRTLPYELGKLFQI 121
LT + D++ L L D S N L L + L L L +L + L Q+
Sbjct: 224 LTEI--DVTPLTQLTYFDCSVNPLTELD--VSTLSKLTTLHCIQTDLLEID--LTHNTQL 277
Query: 122 QILGLHGNPL 131
G
Sbjct: 278 IYFQAEGCRK 287
Score = 43.1 bits (102), Expect = 1e-05
Identities = 23/108 (21%), Positives = 45/108 (41%), Gaps = 5/108 (4%)
Query: 26 NNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTRLSGDISLLINLRTLDISNNKL 85
+N + + + Q LT+L +++++T ++G I L L L ++N +
Sbjct: 18 DNFASEVAAAFEMQATDTISEEQLATLTSLDCHNSSITDMTG-IEKLTGLTKLICTSNNI 76
Query: 86 RYLPSEIGDLIYLRELCLNNNNLRTLPYELGKLFQIQILGLHGNPLSK 133
L + L L ++N L L + L ++ L N L+K
Sbjct: 77 TTLD--LSQNTNLTYLACDSNKLTNLD--VTPLTKLTYLNCDTNKLTK 120
Score = 40.1 bits (94), Expect = 1e-04
Identities = 18/106 (16%), Positives = 34/106 (32%), Gaps = 15/106 (14%)
Query: 1 MNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDN 60
+T L D+S L L ++N +L L D+ T L +L +
Sbjct: 304 CQAAGITEL--DLSQNPKLVYLYLNNTELTEL------------DVSHNTKLKSLSCVNA 349
Query: 61 NLTRLSGDISLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNN 106
++ S + + L + + +P E L +
Sbjct: 350 HIQDFS-SVGKIPALNNNFEAEGQTITMPKETLTNNSLTIAVSPDL 394
Score = 31.6 bits (72), Expect = 0.095
Identities = 20/125 (16%), Positives = 41/125 (32%), Gaps = 20/125 (16%)
Query: 2 NDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNN 61
N+ LT L D+S L++L N ++ S + + L + +
Sbjct: 326 NNTELTEL--DVSHNTKLKSLSCVNAHIQDFSS-----------VGKIPALNNNFEAEGQ 372
Query: 62 LTRLS------GDISLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLRTLPYEL 115
+ +++ ++ LD N + P + G + + NL T +
Sbjct: 373 TITMPKETLTNNSLTIAVSPDLLDQFGNPMNIEPGDGG-VYDQATNTITWENLSTDNPAV 431
Query: 116 GKLFQ 120
F
Sbjct: 432 TYTFT 436
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET:
NAG; 2.50A {Mus musculus}
Length = 312
Score = 48.0 bits (114), Expect = 2e-07
Identities = 27/112 (24%), Positives = 43/112 (38%), Gaps = 15/112 (13%)
Query: 1 MNDNNLTRLSGDISLLI----NLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALY 56
+ + + SG S L L+ LD+S+N LR + L +L
Sbjct: 208 LRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWP--------SQLNSLN 259
Query: 57 MNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNL 108
++ L ++ L L LD+S N+L PS +L + L L N
Sbjct: 260 LSFTGLKQVPK--GLPAKLSVLDLSYNRLDRNPS-PDELPQVGNLSLKGNPF 308
Score = 46.0 bits (109), Expect = 1e-06
Identities = 27/118 (22%), Positives = 44/118 (37%), Gaps = 11/118 (9%)
Query: 16 LINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTRLSGDI--SLLI 73
L+ L + N + A+ L L ++ N+L +G
Sbjct: 200 FPTLQVLALRNAGMETPSGVCSAL------AAARVQLQGLDLSHNSLRDAAGAPSCDWPS 253
Query: 74 NLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLRTLPYELGKLFQIQILGLHGNPL 131
L +L++S L+ +P + L L L+ N L P +L Q+ L L GNP
Sbjct: 254 QLNSLNLSFTGLKQVPKGLPA--KLSVLDLSYNRLDRNP-SPDELPQVGNLSLKGNPF 308
Score = 44.1 bits (104), Expect = 4e-06
Identities = 26/145 (17%), Positives = 47/145 (32%), Gaps = 18/145 (12%)
Query: 1 MNDNNLTR---LSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYM 57
+ + +T + +L L++ N + + ++ L L +
Sbjct: 102 LENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLK-----PGLKVLSI 156
Query: 58 NDNNLTRLSGD-ISLLINLRTLDISNNKLRYLPSEI-----GDLIYLRELCLNNNNLRTL 111
+ S + + + L TLD+S+N I L+ L L N + T
Sbjct: 157 AQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETP 216
Query: 112 PYELGKLF----QIQILGLHGNPLS 132
L Q+Q L L N L
Sbjct: 217 SGVCSALAAARVQLQGLDLSHNSLR 241
Score = 38.0 bits (88), Expect = 6e-04
Identities = 20/143 (13%), Positives = 45/143 (31%), Gaps = 10/143 (6%)
Query: 19 LRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTR---LSGDISLLINL 75
+++L + +R + + + L L + + +T + +L
Sbjct: 65 IKSLSLKRLTVRAARIPSRILFGAL-RVLGISGLQELTLENLEVTGTAPPPLLEATGPDL 123
Query: 76 RTLDISNNKLRYLPSEIGDLI-----YLRELCLNNNNLRTLPYELGKLFQ-IQILGLHGN 129
L++ N + + +L L+ L + + E ++F + L L N
Sbjct: 124 NILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDN 183
Query: 130 PLSKDYMKIYNEPNGTQKLLSYL 152
P + I L L
Sbjct: 184 PELGERGLISALCPLKFPTLQVL 206
Score = 28.3 bits (63), Expect = 1.1
Identities = 12/61 (19%), Positives = 19/61 (31%), Gaps = 13/61 (21%)
Query: 3 DNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNL 62
L ++ L L LD+S N+L PS + + L + N
Sbjct: 262 FTGLKQVPK--GLPAKLSVLDLSYNRLDRNPS-----------PDELPQVGNLSLKGNPF 308
Query: 63 T 63
Sbjct: 309 L 309
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR,
immune system; 2.30A {Eptatretus burgeri}
Length = 177
Score = 46.9 bits (112), Expect = 3e-07
Identities = 29/82 (35%), Positives = 41/82 (50%), Gaps = 3/82 (3%)
Query: 53 TALYMNDNNLTRL-SGDISLLINLRTLDISNNKLRYLPSEIGD-LIYLRELCLNNNNLRT 110
T L + N L L G L L L +S N+++ LP + D L L L L+ N L++
Sbjct: 31 TRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQS 90
Query: 111 LPYEL-GKLFQIQILGLHGNPL 131
LP + KL Q++ L L N L
Sbjct: 91 LPNGVFDKLTQLKELALDTNQL 112
Score = 44.6 bits (106), Expect = 2e-06
Identities = 34/108 (31%), Positives = 51/108 (47%), Gaps = 12/108 (11%)
Query: 2 NDNNLTRL-SGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDN 60
N L L G L L L +S N+++ LP G L T LT LY+++N
Sbjct: 36 ESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPD--GVFDKL-------TKLTILYLHEN 86
Query: 61 NLTRL-SGDISLLINLRTLDISNNKLRYLPSEIGD-LIYLRELCLNNN 106
L L +G L L+ L + N+L+ +P I D L L+++ L+ N
Sbjct: 87 KLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 134
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex,
GPCR, graves' disea autoimmunity, receptor-autoantibody
complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB:
3g04_C*
Length = 239
Score = 47.3 bits (113), Expect = 3e-07
Identities = 30/136 (22%), Positives = 58/136 (42%), Gaps = 18/136 (13%)
Query: 2 NDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNN 61
++ R+ SL + +TL + LR +PS A NL +++ +Y++ +
Sbjct: 19 TCKDIQRIP---SLPPSTQTLKLIETHLRTIPS--HAFSNL-------PNISRIYVSIDV 66
Query: 62 -LTRLSGDI-SLLINLRTLDISNNK-LRYLPSEI-GDLIYLRELCLNNNNLRTLP--YEL 115
L +L L + ++I N + L Y+ + +L L+ L + N L+ P ++
Sbjct: 67 TLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKV 126
Query: 116 GKLFQIQILGLHGNPL 131
IL + NP
Sbjct: 127 YSTDIFFILEITDNPY 142
Score = 45.8 bits (109), Expect = 1e-06
Identities = 28/138 (20%), Positives = 47/138 (34%), Gaps = 15/138 (10%)
Query: 2 NDNNLTRLSGDI-SLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDN 60
N NLT + D L L+ L I N L+ P ++ L + DN
Sbjct: 89 NTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTK--------VYSTDIFFILEITDN 140
Query: 61 N-LTRLSGDI--SLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNN-LRTLPYEL- 115
+T + + L TL + NN + + L + LN N L + +
Sbjct: 141 PYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAF 200
Query: 116 -GKLFQIQILGLHGNPLS 132
G +L + ++
Sbjct: 201 GGVYSGPSLLDVSQTSVT 218
Score = 36.1 bits (84), Expect = 0.002
Identities = 26/108 (24%), Positives = 41/108 (37%), Gaps = 17/108 (15%)
Query: 4 NNLTRLSGDI--SLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNN 61
+T + + L TL + NN + + T L A+Y+N N
Sbjct: 141 PYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQ----------GYAFNGTKLDAVYLNKNK 190
Query: 62 -LTRLSGDI--SLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNN 106
LT + D + LD+S + LPS+ L +L+EL N
Sbjct: 191 YLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSKG--LEHLKELIARNT 236
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2
protein, silver-stainable protein SSP29, acidic prote in
leucines, structural genomics; NMR {Homo sapiens} PDB:
2rr6_A 2jqd_A
Length = 168
Score = 43.2 bits (102), Expect = 5e-06
Identities = 24/108 (22%), Positives = 46/108 (42%), Gaps = 14/108 (12%)
Query: 2 NDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNN 61
+N ++ G + +NL L + N L + +L + L L +++N
Sbjct: 34 CKSNDGKIEGLTAEFVNLEFLSLINVGLISV-----------SNLPKLPKLKKLELSENR 82
Query: 62 LTRLSGDIS-LLINLRTLDISNNKLRYLPS--EIGDLIYLRELCLNNN 106
+ ++ L NL L++S NKL+ + + + L L+ L L N
Sbjct: 83 IFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNC 130
Score = 33.2 bits (76), Expect = 0.019
Identities = 21/79 (26%), Positives = 35/79 (44%), Gaps = 2/79 (2%)
Query: 55 LYMNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNL-RTLPY 113
L +N ++ G + +NL L + N L + + + L L++L L+ N + L
Sbjct: 31 LDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSN-LPKLPKLKKLELSENRIFGGLDM 89
Query: 114 ELGKLFQIQILGLHGNPLS 132
KL + L L GN L
Sbjct: 90 LAEKLPNLTHLNLSGNKLK 108
Score = 28.2 bits (63), Expect = 0.84
Identities = 20/89 (22%), Positives = 39/89 (43%), Gaps = 13/89 (14%)
Query: 1 MNDNNLTRLSGDIS-LLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMND 59
+++N + ++ L NL L++S NKL +I ++ L + L +L + +
Sbjct: 78 LSENRIFGGLDMLAEKLPNLTHLNLSGNKL----KDISTLEPLK----KLECLKSLDLFN 129
Query: 60 NNLTRLSG----DISLLINLRTLDISNNK 84
+T L+ LL L LD + +
Sbjct: 130 CEVTNLNDYRESVFKLLPQLTYLDGYDRE 158
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear
protein; 2.40A {Homo sapiens} PDB: 2je1_A
Length = 149
Score = 39.7 bits (93), Expect = 8e-05
Identities = 24/108 (22%), Positives = 43/108 (39%), Gaps = 14/108 (12%)
Query: 2 NDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNN 61
+ +N +L G L L N L + +L + L L ++DN
Sbjct: 27 SRSNEGKLEGLTDEFEELEFLSTINVGLTSI-----------ANLPKLNKLKKLELSDNR 75
Query: 62 LTRLSGDIS-LLINLRTLDISNNKLRYLPS--EIGDLIYLRELCLNNN 106
++ ++ NL L++S NK++ L + + L L+ L L N
Sbjct: 76 VSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123
Score = 32.7 bits (75), Expect = 0.020
Identities = 19/79 (24%), Positives = 32/79 (40%), Gaps = 2/79 (2%)
Query: 55 LYMNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLRTLPYE 114
L + +N +L G L L N L + + + L L++L L++N +
Sbjct: 24 LDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEV 82
Query: 115 LG-KLFQIQILGLHGNPLS 132
L K + L L GN +
Sbjct: 83 LAEKCPNLTHLNLSGNKIK 101
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor,
GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens}
PDB: 3rez_A*
Length = 130
Score = 36.3 bits (84), Expect = 0.001
Identities = 14/53 (26%), Positives = 20/53 (37%), Gaps = 7/53 (13%)
Query: 49 FTHLTALYMNDNNLTRLSGDI-SLLINLRTLDISNN------KLRYLPSEIGD 94
T L + NNLT L + L LRT + N +L L + +
Sbjct: 30 PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCDCRLVPLRAWLAG 82
Score = 34.8 bits (80), Expect = 0.003
Identities = 13/35 (37%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
Query: 98 LRELCLNNNNLRTLPYE-LGKLFQIQILGLHGNPL 131
EL L NNL LP L L ++ L NP
Sbjct: 33 TTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67
Score = 27.5 bits (61), Expect = 1.3
Identities = 12/40 (30%), Positives = 16/40 (40%), Gaps = 7/40 (17%)
Query: 1 MNDNNLTRLSGDI-SLLINLRTLDISNN------KLRYLP 33
+ NNLT L + L LRT + N +L L
Sbjct: 38 LTGNNLTALPPGLLDALPALRTAHLGANPWRCDCRLVPLR 77
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral
twinning, leucine-rich repeat protein, LRR, merohedral
twinning; 2.2A {Schizosaccharomyces pombe} SCOP:
c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Length = 386
Score = 35.5 bits (82), Expect = 0.004
Identities = 21/111 (18%), Positives = 37/111 (33%), Gaps = 20/111 (18%)
Query: 18 NLRTLDISNNKLRYLPSEIG-AVKNLSPDLWQFTHLTALYMNDNNLT-----RLSGDISL 71
+L + S+ + EI A++ L L + L + ++DN L +S
Sbjct: 61 DLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSK 120
Query: 72 LINLRTLDISNNKL--------------RYLPSEIGDLIYLRELCLNNNNL 108
L L + NN L + + + LR + N L
Sbjct: 121 HTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRL 171
Score = 35.5 bits (82), Expect = 0.004
Identities = 20/107 (18%), Positives = 37/107 (34%), Gaps = 21/107 (19%)
Query: 18 NLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTRLSGDI-------- 69
+++ + +S N + A + LS ++ L +D R+ +I
Sbjct: 33 SVKEIVLSGNTI-----GTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLL 87
Query: 70 ---SLLINLRTLDISNNKL-----RYLPSEIGDLIYLRELCLNNNNL 108
L T+ +S+N L + L L L+NN L
Sbjct: 88 QALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGL 134
Score = 35.5 bits (82), Expect = 0.005
Identities = 33/135 (24%), Positives = 51/135 (37%), Gaps = 22/135 (16%)
Query: 18 NLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTR-----LSGDISLL 72
L T+ + N +R G L L L L + DN T L+ +
Sbjct: 188 LLHTVKMVQNGIR----PEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSW 243
Query: 73 INLRTLDISNNKLR-----YLPSEIGDL--IYLRELCLNNNNL-----RTLPYELG-KLF 119
NLR L +++ L + L I L+ L L N + RTL + K+
Sbjct: 244 PNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMP 303
Query: 120 QIQILGLHGNPLSKD 134
+ L L+GN S++
Sbjct: 304 DLLFLELNGNRFSEE 318
Score = 30.8 bits (70), Expect = 0.14
Identities = 15/99 (15%), Positives = 37/99 (37%), Gaps = 11/99 (11%)
Query: 19 LRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLT-----RLSGDISLLI 73
+ + + + + K++ L + + + ++ N + LS +I+
Sbjct: 6 IEGKSLKLDAI----TTEDE-KSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKK 60
Query: 74 NLRTLDISNNKLRYLPSEIGD-LIYLRELCLNNNNLRTL 111
+L + S+ + EI + L L + L L T+
Sbjct: 61 DLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTV 99
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport
element (CTE), RNA recogni motif (RRM); HET: GTP CCC;
2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A
1fo1_A
Length = 267
Score = 35.4 bits (81), Expect = 0.005
Identities = 24/110 (21%), Positives = 47/110 (42%), Gaps = 20/110 (18%)
Query: 5 NLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTR 64
+L L D + + +D+ N+ + + + ++ L +L +++N L R
Sbjct: 133 DLKGLRSD--PDLVAQNIDVVLNRRSCMAATLRIIE------ENIPELLSLNLSNNRLYR 184
Query: 65 LSGDISLLI---NLRTLDISNNKLRYLPSEIGDLIY-----LRELCLNNN 106
L S++ NL+ L++S N+L +L L EL L+ N
Sbjct: 185 LDDMSSIVQKAPNLKILNLSGNEL----KSERELDKIKGLKLEELWLDGN 230
Score = 33.0 bits (75), Expect = 0.026
Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 6/68 (8%)
Query: 74 NLRTLDISNNKLR---YLPSEIGDLIYLRELCLNNNNLRTLPYELGKL--FQIQILGLHG 128
L +L++SNN+L + S + L+ L L+ N L++ EL K+ +++ L L G
Sbjct: 171 ELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE-RELDKIKGLKLEELWLDG 229
Query: 129 NPLSKDYM 136
N L +
Sbjct: 230 NSLCDTFR 237
Score = 28.4 bits (63), Expect = 0.94
Identities = 22/90 (24%), Positives = 38/90 (42%), Gaps = 20/90 (22%)
Query: 1 MNDNNLTRLSGDISLLI---NLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYM 57
+++N L RL S++ NL+ L++S N+L+ E+ +K L L L++
Sbjct: 177 LSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE-RELDKIKGL--------KLEELWL 227
Query: 58 NDNNLTRLSGD--------ISLLINLRTLD 79
+ N+L D L LD
Sbjct: 228 DGNSLCDTFRDQSTYISAIRERFPKLLRLD 257
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 32.5 bits (73), Expect = 0.050
Identities = 22/131 (16%), Positives = 40/131 (30%), Gaps = 48/131 (36%)
Query: 15 LLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQF----THLTALYMNDNNLTRLSGDIS 70
+ ++ R L+ K+R+ + A ++ L Q ++ ND RL I
Sbjct: 496 VFLDFRFLE---QKIRHDSTAWNASGSILNTLQQLKFYKPYICD---NDPKYERLVNAI- 548
Query: 71 LLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLRTLPYELGKLFQIQILGLHGNP 130
L +LP +LI + L ++I
Sbjct: 549 --------------LDFLPKIEENLICSKYTDL-----------------LRI------A 571
Query: 131 LSKDYMKIYNE 141
L + I+ E
Sbjct: 572 LMAEDEAIFEE 582
Score = 27.1 bits (59), Expect = 2.9
Identities = 25/117 (21%), Positives = 41/117 (35%), Gaps = 20/117 (17%)
Query: 13 ISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMN-DNNLTRLSGDISL 71
+ + ++ + + K+ +L + SP+ L L D N T S D S
Sbjct: 168 LDVCLSYKVQCKMDFKIFWL--NLKNCN--SPET-VLEMLQKLLYQIDPNWTSRS-DHSS 221
Query: 72 LINLRTLDISNNKLRYLPSEIG--DLIYLRELCLNNNNLRTLPYELGKLFQI--QIL 124
I LR I R L S+ L+ L + N + F + +IL
Sbjct: 222 NIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQ----NAKAW-----NAFNLSCKIL 269
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor
complex, structural genomics, protein structure
initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens}
SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Length = 461
Score = 31.9 bits (73), Expect = 0.073
Identities = 18/83 (21%), Positives = 33/83 (39%), Gaps = 11/83 (13%)
Query: 9 LSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQF-THLTALYMNDNNLTR--- 64
L + +L+ L ++ N+L + L L + L +L++ + T
Sbjct: 276 LCRVLRAKESLKELSLAGNEL-----GDEGARLLCETLLEPGCQLESLWVKSCSFTAACC 330
Query: 65 --LSGDISLLINLRTLDISNNKL 85
S ++ L L ISNN+L
Sbjct: 331 SHFSSVLAQNRFLLELQISNNRL 353
Score = 31.1 bits (71), Expect = 0.13
Identities = 27/131 (20%), Positives = 46/131 (35%), Gaps = 20/131 (15%)
Query: 18 NLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLT-----RLSGDISLL 72
L+ L +S+N L + G L L L + +L+ L+ +
Sbjct: 114 TLQELHLSDNLL----GDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAK 169
Query: 73 INLRTLDISNNKL-----RYLPSEIGD-LIYLRELCLNNNNL-----RTLPYELGKLFQI 121
+ + L +SNN + R L + D L L L + + R L + +
Sbjct: 170 PDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASL 229
Query: 122 QILGLHGNPLS 132
+ L L N L
Sbjct: 230 RELALGSNKLG 240
Score = 31.1 bits (71), Expect = 0.15
Identities = 24/74 (32%), Positives = 36/74 (48%), Gaps = 11/74 (14%)
Query: 18 NLRTLDISNNKLRYLPSEIGAVKNLSPDLWQF-THLTALYMNDNNLTR-----LSGDISL 71
L L ISNN+L E V+ L L Q + L L++ D +++ L+ +
Sbjct: 342 FLLELQISNNRL-----EDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLA 396
Query: 72 LINLRTLDISNNKL 85
+LR LD+SNN L
Sbjct: 397 NHSLRELDLSNNCL 410
Score = 30.7 bits (70), Expect = 0.17
Identities = 27/131 (20%), Positives = 48/131 (36%), Gaps = 24/131 (18%)
Query: 18 NLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLT-----RLSGDISLL 72
++++LDI +L L P L + ++D LT +S + +
Sbjct: 4 DIQSLDIQCEELSD-----ARWAELLPLL---QQCQVVRLDDCGLTEARCKDISSALRVN 55
Query: 73 INLRTLDISNNKL-----RYLPSEIGDL-IYLRELCLNNNNL-----RTLPYELGKLFQI 121
L L++ +N+L + + +++L L N L L L L +
Sbjct: 56 PALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTL 115
Query: 122 QILGLHGNPLS 132
Q L L N L
Sbjct: 116 QELHLSDNLLG 126
Score = 30.3 bits (69), Expect = 0.27
Identities = 23/103 (22%), Positives = 35/103 (33%), Gaps = 18/103 (17%)
Query: 18 NLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTRLSGDISL------ 71
LRTL I + + G +L L L L + N L G L
Sbjct: 257 RLRTLWIWECGI----TAKGC-GDLCRVLRAKESLKELSLAGNELG-DEGARLLCETLLE 310
Query: 72 -LINLRTLDISNNKL-----RYLPSEIGDLIYLRELCLNNNNL 108
L +L + + + S + +L EL ++NN L
Sbjct: 311 PGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRL 353
Score = 29.9 bits (68), Expect = 0.31
Identities = 25/111 (22%), Positives = 43/111 (38%), Gaps = 24/111 (21%)
Query: 13 ISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTRLSGDISLL 72
+ LL + + + + L +E K++S L L L + N L GD+ +
Sbjct: 24 LPLLQQCQVVRLDDCGL----TEARC-KDISSALRVNPALAELNLRSNEL----GDVGVH 74
Query: 73 I----------NLRTLDISNNKL-----RYLPSEIGDLIYLRELCLNNNNL 108
++ L + N L L S + L L+EL L++N L
Sbjct: 75 CVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLL 125
Score = 27.2 bits (61), Expect = 2.6
Identities = 13/66 (19%), Positives = 27/66 (40%), Gaps = 7/66 (10%)
Query: 50 THLTALYMNDNNLT--RLSGDISLLINLRTLDISNNKL-----RYLPSEIGDLIYLRELC 102
+ +L + L+ R + + LL + + + + L + + S + L EL
Sbjct: 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 62
Query: 103 LNNNNL 108
L +N L
Sbjct: 63 LRSNEL 68
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain,
leucine rich repeats, BFR43, structural genomics, PSI-2;
1.95A {Bacteroides fragilis}
Length = 362
Score = 31.8 bits (71), Expect = 0.079
Identities = 16/79 (20%), Positives = 29/79 (36%), Gaps = 10/79 (12%)
Query: 14 SLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLT-----RLSGD 68
+L L T+DIS L + L + + HL + M N L+ L
Sbjct: 276 DILPQLETMDISAGVLTD-----EGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKS 330
Query: 69 ISLLINLRTLDISNNKLRY 87
+ + I++ ++ Y
Sbjct: 331 LPMKIDVSDSQEYDDDYSY 349
Score = 30.3 bits (67), Expect = 0.21
Identities = 26/130 (20%), Positives = 43/130 (33%), Gaps = 26/130 (20%)
Query: 14 SLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLW--QFTHLTALYMNDNNLT----RLSG 67
S L NL L + Y G + P +F +L L + D +
Sbjct: 216 SDLPNLEKLVLYVGVEDYGFD--GDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFL 273
Query: 68 DISLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLRTLPYELGKLFQIQILGLH 127
+ +L L T+DIS L + R L + K+ ++ + +
Sbjct: 274 ESDILPQLETMDISAGVLT------------------DEGARLLLDHVDKIKHLKFINMK 315
Query: 128 GNPLSKDYMK 137
N LS + K
Sbjct: 316 YNYLSDEMKK 325
>3al9_A Plexin-A2; beta-propeller, membrane protein, signaling protein;
HET: NAG; 2.10A {Mus musculus} PDB: 3al8_B*
Length = 539
Score = 30.0 bits (66), Expect = 0.33
Identities = 14/60 (23%), Positives = 28/60 (46%)
Query: 60 NNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLRTLPYELGKLF 119
N + +L+G++++ + +T +NK Y P + + L N N L + Y +L
Sbjct: 38 NRVYKLTGNLTIQVAHKTGPEEDNKACYPPLIVQPCSEVLTLTNNVNKLLIIDYSENRLL 97
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 29.6 bits (66), Expect = 0.45
Identities = 28/172 (16%), Positives = 57/172 (33%), Gaps = 56/172 (32%)
Query: 17 INLRTLDISNNKLRY---LPSEIGAVKNLSPDLW-QFTHL----TALYMNDNNLTRLSGD 68
+ R L +S+ L + +P+ + + L QF + T + D+ +
Sbjct: 4 YSTRPLTLSHGSLEHVLLVPTASFFIAS---QLQEQFNKILPEPTEGFAADD---EPTTP 57
Query: 69 ISLLINLRTLDISNNKLRYL--------PSEIGDLIYLRELCLN--------NNNLRTLP 112
L+ ++L PS++G + LCL N++ L
Sbjct: 58 AELV------------GKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALA 105
Query: 113 YELGKLFQIQILGLHGNPLSKDYMKIY-------NEPNGTQKLLSYLLDSLQ 157
+L + + +K+ +K Y P +K S L ++
Sbjct: 106 AKLLQENDTTL------VKTKELIKNYITARIMAKRPF-DKKSNSALFRAVG 150
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral
signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A
{Homo sapiens}
Length = 372
Score = 29.3 bits (66), Expect = 0.52
Identities = 13/73 (17%), Positives = 26/73 (35%), Gaps = 10/73 (13%)
Query: 18 NLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTR-----LSGDISLL 72
++ L + + L + G + L+ L + L L + N L+
Sbjct: 184 SVTHLSLLHTGL----GDEGL-ELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREH 238
Query: 73 INLRTLDISNNKL 85
+L L + N+L
Sbjct: 239 PSLELLHLYFNEL 251
Score = 26.2 bits (58), Expect = 5.8
Identities = 20/107 (18%), Positives = 40/107 (37%), Gaps = 16/107 (14%)
Query: 13 ISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLW-QFTHLTALYMNDNNLT-----RLS 66
+ + + R L + N L K+L L +T L +++N LT L
Sbjct: 122 LPVFLRARKLGLQLNSL----GPEAC-KDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLM 176
Query: 67 GDISLLINLRTLDISNNKL-----RYLPSEIGDLIYLRELCLNNNNL 108
++ ++ L + + L L +++ L+EL + N
Sbjct: 177 EGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGA 223
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148,
structural genomics, PSI-2, protein structure
initiative; 2.10A {Legionella pneumophila subsp}
Length = 362
Score = 28.5 bits (64), Expect = 0.83
Identities = 17/100 (17%), Positives = 37/100 (37%), Gaps = 13/100 (13%)
Query: 18 NLRTLDISNNKLRYLPSEIGAVKNLSPDLWQF-THLTALYMNDNNLT-----RLSGDISL 71
++ +LD+S N L + + L+ H+ +L + N L L
Sbjct: 197 SVTSLDLSANLL-----GLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDS 251
Query: 72 LINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLRTL 111
L +L+T+ + + ++ + E L N + +
Sbjct: 252 LKHLQTVYLDYDIVKNMSKE--QCKALGAAFPNIQKIILV 289
Score = 26.2 bits (58), Expect = 4.8
Identities = 17/101 (16%), Positives = 35/101 (34%), Gaps = 16/101 (15%)
Query: 18 NLRTLDISNNKLRYLPSEIGAVKNLSPDLWQF-THLTALYMNDNNLTRL------SGDIS 70
++ +L++ N L + L L ++ +L + NNL S
Sbjct: 139 SITSLNLRGNDLGIK-----SSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLAS 193
Query: 71 LLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLRTL 111
+ ++ +LD+S N L N++ +L
Sbjct: 194 IPASVTSLDLSANLL----GLKSYAELAYIFSSIPNHVVSL 230
>3q62_A 3-hydroxydecanoyl-[acyl-carrier-protein] dehydrat; structural
genomics, center for structural genomics of infec
diseases, csgid; HET: MES; 1.40A {Yersinia
pseudotuberculosis} PDB: 1mka_A* 1mkb_A
Length = 175
Score = 27.6 bits (61), Expect = 1.3
Identities = 9/43 (20%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Query: 8 RLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFT 50
L L+++ R + + + + + A +++PDLW F
Sbjct: 31 PLPAGNMLMMD-RIVKMIEDGGSHNKGYVEAELDINPDLWFFG 72
>3oky_A Plexin-A2; transmembrane, ligand, SEMA-domain, cell-CELL
signalling, SI protein; HET: NAG; 2.19A {Mus musculus}
PDB: 3okt_A*
Length = 681
Score = 28.1 bits (61), Expect = 1.4
Identities = 14/60 (23%), Positives = 28/60 (46%)
Query: 60 NNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLRTLPYELGKLF 119
N + +L+G++++ + +T +NK Y P + + L N N L + Y +L
Sbjct: 37 NRVYKLTGNLTIQVAHKTGPEEDNKACYPPLIVQPCSEVLTLTNNVNKLLIIDYSENRLL 96
>2cf2_C Fatty acid synthase, DH domain; transferase, fatty acid metabolism,
fatty acid biosynthesis, multienzyme; 4.30A {Sus scrofa}
SCOP: d.38.1.2
Length = 342
Score = 27.9 bits (61), Expect = 1.5
Identities = 9/44 (20%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Query: 8 RLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTH 51
+L L+++ R + ++ + + A +++PDLW F
Sbjct: 198 QLPAPNMLMMD-RVVKMTETGGNFDKGYVEAELDINPDLWFFGC 240
>3dyh_A Farnesyl pyrophosphate synthase; protein-bisphosphonate complex,
isoprene biosynthesis, transferase; HET: 721; 1.94A
{Trypanosoma brucei} PDB: 2ewg_A* 2i19_A* 2p1c_A*
3dyf_A* 3dyg_A* 2ogd_A* 3efq_A* 3egt_A*
Length = 390
Score = 27.5 bits (61), Expect = 2.2
Identities = 9/46 (19%), Positives = 19/46 (41%), Gaps = 2/46 (4%)
Query: 87 YLPSEIGDLIYLRELCLNNNNLRTLPYELGKLFQIQ--ILGLHGNP 130
LP +G ++ ++ L +G+ FQ+Q ++ P
Sbjct: 242 LLPLVMGLIVSEALPTVDMGVTEELAMLMGEYFQVQDDVMDCFTPP 287
>1yhl_A Farnesyl pyrophosphate synthase; farnesyl diphosphate synthase,
bisphosphonate, dimethyl ALLY pyrophosphate sulfate,
FPPS, transferase; HET: DMA RIS; 1.95A {Trypanosoma
cruzi} PDB: 1yhk_A* 1yhm_A* 3iba_A* 3ick_A* 3icm_A*
3icn_A* 3icz_A* 3id0_A*
Length = 362
Score = 26.3 bits (58), Expect = 5.5
Identities = 9/46 (19%), Positives = 20/46 (43%), Gaps = 2/46 (4%)
Query: 87 YLPSEIGDLIYLRELCLNNNNLRTLPYELGKLFQIQ--ILGLHGNP 130
LP +G + + N + + + +G+ FQ+Q ++ P
Sbjct: 214 LLPLVMGLFVSEAAASVEMNLVERVAHLIGEYFQVQDDVMDCFTPP 259
>3e96_A Dihydrodipicolinate synthase; structural genomics, nysgrc, target
9375C, operon, PSI-2; 1.80A {Bacillus clausii ksm-k16}
Length = 316
Score = 25.6 bits (57), Expect = 8.9
Identities = 6/33 (18%), Positives = 13/33 (39%)
Query: 36 IGAVKNLSPDLWQFTHLTALYMNDNNLTRLSGD 68
+ VK DL +F + ++ + + G
Sbjct: 163 LVGVKYAINDLPRFAKVVRSIPEEHQIAWICGT 195
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.139 0.397
Gapped
Lambda K H
0.267 0.0811 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,269,253
Number of extensions: 126992
Number of successful extensions: 2957
Number of sequences better than 10.0: 1
Number of HSP's gapped: 640
Number of HSP's successfully gapped: 467
Length of query: 157
Length of database: 6,701,793
Length adjustment: 86
Effective length of query: 71
Effective length of database: 4,300,587
Effective search space: 305341677
Effective search space used: 305341677
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (24.0 bits)