RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy3049
(157 letters)
>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia
pestis [TaxId: 632]}
Length = 353
Score = 52.1 bits (123), Expect = 3e-09
Identities = 23/90 (25%), Positives = 35/90 (38%), Gaps = 19/90 (21%)
Query: 16 LINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTRLSGDISLLINL 75
+L L++SNNKL LP+ L L + N+L + NL
Sbjct: 283 PPSLEELNVSNNKLIELPALPP-------------RLERLIASFNHLAEVPELPQ---NL 326
Query: 76 RTLDISNNKLRYLPSEIGDLIYLRELCLNN 105
+ L + N LR P + LR +N+
Sbjct: 327 KQLHVEYNPLREFPDIPESVEDLR---MNS 353
Score = 49.8 bits (117), Expect = 2e-08
Identities = 17/77 (22%), Positives = 29/77 (37%), Gaps = 6/77 (7%)
Query: 47 WQFTHLTALYMNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNN 106
L L +++N L L L L S N L +P +L ++L + N
Sbjct: 281 DLPPSLEELNVSNNKLIELPALPP---RLERLIASFNHLAEVPELPQNL---KQLHVEYN 334
Query: 107 NLRTLPYELGKLFQIQI 123
LR P + +++
Sbjct: 335 PLREFPDIPESVEDLRM 351
Score = 45.2 bits (105), Expect = 7e-07
Identities = 22/87 (25%), Positives = 35/87 (40%), Gaps = 6/87 (6%)
Query: 47 WQFTHLTALYMNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNN 106
LY + + + L +L L++SNNKL LP+ L L + N
Sbjct: 258 GLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIELPALPP---RLERLIASFN 314
Query: 107 NLRTLPYELGKLFQIQILGLHGNPLSK 133
+L +P L + L + NPL +
Sbjct: 315 HLAEVPELPQNL---KQLHVEYNPLRE 338
Score = 40.6 bits (93), Expect = 3e-05
Identities = 13/58 (22%), Positives = 21/58 (36%), Gaps = 3/58 (5%)
Query: 74 NLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLRTLPYELGKLFQIQILGLHGNPL 131
L+++N L LP L L + N+L LP L + + + L
Sbjct: 39 QAHELELNNLGLSSLPELPPHL---ESLVASCNSLTELPELPQSLKSLLVDNNNLKAL 93
Score = 37.9 bits (86), Expect = 3e-04
Identities = 19/66 (28%), Positives = 24/66 (36%), Gaps = 3/66 (4%)
Query: 50 THLTALYMNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLR 109
L +N+ L+ L L +L +L S N L LP L L N L
Sbjct: 38 RQAHELELNNLGLSSLP---ELPPHLESLVASCNSLTELPELPQSLKSLLVDNNNLKALS 94
Query: 110 TLPYEL 115
LP L
Sbjct: 95 DLPPLL 100
Score = 37.5 bits (85), Expect = 4e-04
Identities = 15/76 (19%), Positives = 24/76 (31%), Gaps = 16/76 (21%)
Query: 1 MNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDN 60
+++N L L L L S N L +P +L L++ N
Sbjct: 291 VSNNKLIELPALPP---RLERLIASFNHLAEVPELPQ-------------NLKQLHVEYN 334
Query: 61 NLTRLSGDISLLINLR 76
L + +LR
Sbjct: 335 PLREFPDIPESVEDLR 350
Score = 35.2 bits (79), Expect = 0.002
Identities = 21/80 (26%), Positives = 32/80 (40%), Gaps = 16/80 (20%)
Query: 18 NLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTRLSGDISLLINLRT 77
L+++N L LP HL +L + N+LT L L +L++
Sbjct: 39 QAHELELNNLGLSSLPELPP-------------HLESLVASCNSLTELP---ELPQSLKS 82
Query: 78 LDISNNKLRYLPSEIGDLIY 97
L + NN L+ L L Y
Sbjct: 83 LLVDNNNLKALSDLPPLLEY 102
Score = 31.7 bits (70), Expect = 0.029
Identities = 16/58 (27%), Positives = 25/58 (43%), Gaps = 3/58 (5%)
Query: 1 MNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMN 58
+N+ L+ L L +L +L S N L LP ++K+L D L+ L
Sbjct: 45 LNNLGLSSLP---ELPPHLESLVASCNSLTELPELPQSLKSLLVDNNNLKALSDLPPL 99
Score = 28.6 bits (62), Expect = 0.34
Identities = 12/36 (33%), Positives = 16/36 (44%), Gaps = 3/36 (8%)
Query: 98 LRELCLNNNNLRTLPYELGKLFQIQILGLHGNPLSK 133
EL LNN L +LP L + L N L++
Sbjct: 40 AHELELNNLGLSSLPELPPHL---ESLVASCNSLTE 72
>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes
[TaxId: 1639]}
Length = 384
Score = 48.8 bits (115), Expect = 4e-08
Identities = 33/140 (23%), Positives = 62/140 (44%), Gaps = 15/140 (10%)
Query: 1 MNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDL-----------WQF 49
+ +N ++ L+ +S L L L + N++ + G + +L
Sbjct: 248 LANNQISNLA-PLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNL 306
Query: 50 THLTALYMNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLR 109
+LT L + NN++ +S +S L L+ L +NNK+ + S + +L + L +N +
Sbjct: 307 KNLTYLTLYFNNISDISP-VSSLTKLQRLFFANNKVSDVSS-LANLTNINWLSAGHNQIS 364
Query: 110 TLPYELGKLFQIQILGLHGN 129
L L L +I LGL+
Sbjct: 365 DLT-PLANLTRITQLGLNDQ 383
Score = 40.0 bits (92), Expect = 5e-05
Identities = 35/142 (24%), Positives = 58/142 (40%), Gaps = 13/142 (9%)
Query: 1 MNDNNLTRLSGDISLLINLRTLDISNNKLRYLP--SEIGAVKNLSPDLWQFTHLTALY-- 56
+N N L + G ++ L NL LD++NN++ L S + + L Q ++++ L
Sbjct: 226 LNGNQLKDI-GTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGL 284
Query: 57 ------MNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLRT 110
+ N IS L NL L + N + + + L L+ L NN +
Sbjct: 285 TALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDIS-PVSSLTKLQRLFFANNKVSD 343
Query: 111 LPYELGKLFQIQILGLHGNPLS 132
+ L L I L N +S
Sbjct: 344 VS-SLANLTNINWLSAGHNQIS 364
Score = 33.1 bits (74), Expect = 0.009
Identities = 15/60 (25%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
Query: 48 QFTHLTALYMNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNN 107
+T L + + + G + L NL ++ SNN+L + + +L L ++ +NNN
Sbjct: 42 DLDQVTTLQADRLGIKSIDG-VEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQ 99
Score = 29.6 bits (65), Expect = 0.14
Identities = 10/64 (15%), Positives = 22/64 (34%), Gaps = 2/64 (3%)
Query: 49 FTHLTALYMNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNL 108
+ N+T + L + TL ++ + + L L ++ +NN L
Sbjct: 21 LAEKMKTVLGKTNVTDTV-SQTDLDQVTTLQADRLGIKSIDG-VEYLNNLTQINFSNNQL 78
Query: 109 RTLP 112
+
Sbjct: 79 TDIT 82
Score = 25.7 bits (55), Expect = 2.6
Identities = 8/34 (23%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 1 MNDNNLTRLSGDISLLINLRTLDISNNKLRYLPS 34
+ + + G + L NL ++ SNN+L +
Sbjct: 51 ADRLGIKSIDG-VEYLNNLTQINFSNNQLTDITP 83
Score = 25.0 bits (53), Expect = 5.5
Identities = 14/83 (16%), Positives = 32/83 (38%), Gaps = 13/83 (15%)
Query: 1 MNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDN 60
+ N+T + L + TL ++ + + +LT + ++N
Sbjct: 29 LGKTNVTDTV-SQTDLDQVTTLQADRLGIKSIDG-----------VEYLNNLTQINFSNN 76
Query: 61 NLTRLSGDISLLINLRTLDISNN 83
LT ++ + L L + ++NN
Sbjct: 77 QLTDITP-LKNLTKLVDILMNNN 98
>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase
alpha-subunit, C-terminal domain {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 124
Score = 40.1 bits (93), Expect = 1e-05
Identities = 23/112 (20%), Positives = 43/112 (38%), Gaps = 15/112 (13%)
Query: 1 MNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLS------------PDLWQ 48
+ +LT L + L+ + LD+S+N+LR LP + A++ L +
Sbjct: 5 LAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGVAN 63
Query: 49 FTHLTALYMNDNNLTRLS--GDISLLINLRTLDISNNKLRYLPSEIGDLIYL 98
L L + +N L + + + L L++ N L L +
Sbjct: 64 LPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEM 115
Score = 38.9 bits (90), Expect = 4e-05
Identities = 30/117 (25%), Positives = 47/117 (40%), Gaps = 14/117 (11%)
Query: 20 RTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTRLSGDISLLINLRTLD 79
R L +++ L L L Q +T L ++ N L L ++ L L L
Sbjct: 1 RVLHLAHKDLTVLCH-----------LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQ 49
Query: 80 ISNNKLRYLPSEIGDLIYLRELCLNNNNLRTLP--YELGKLFQIQILGLHGNPLSKD 134
S+N L + L+EL L NN L+ L ++ +L L GN L ++
Sbjct: 50 ASDNALENVDGVANL-PRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQE 105
Score = 25.8 bits (56), Expect = 1.4
Identities = 7/48 (14%), Positives = 17/48 (35%), Gaps = 2/48 (4%)
Query: 1 MNDNNLTRLS--GDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDL 46
+ +N L + + + L L++ N L + + P +
Sbjct: 72 LCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSV 119
>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}
Length = 305
Score = 40.8 bits (94), Expect = 2e-05
Identities = 34/133 (25%), Positives = 59/133 (44%), Gaps = 16/133 (12%)
Query: 18 NLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTRL-SGDISLLINLR 76
+LR + S+ L +P ++ L + +N +T + GD L NL
Sbjct: 11 HLRVVQCSDLGLEKVPKDL------------PPDTALLDLQNNKITEIKDGDFKNLKNLH 58
Query: 77 TLDISNNKLRYL-PSEIGDLIYLRELCLNNNNLRTLPYELGKLFQIQILGLHGNPLSKDY 135
TL + NNK+ + P L+ L L L+ N L+ LP ++ +Q L +H N ++K
Sbjct: 59 TLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMP--KTLQELRVHENEITKVR 116
Query: 136 MKIYNEPNGTQKL 148
++N N +
Sbjct: 117 KSVFNGLNQMIVV 129
Score = 33.9 bits (76), Expect = 0.005
Identities = 27/152 (17%), Positives = 57/152 (37%), Gaps = 20/152 (13%)
Query: 1 MNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGA------------VKNLSPDLWQ 48
+ +G + L + I++ + +P + K + L
Sbjct: 134 NPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKG 193
Query: 49 FTHLTALYM-NDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNN 107
+L L + ++ +G ++ +LR L ++NNKL +P + D Y++ + L+NNN
Sbjct: 194 LNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNN 253
Query: 108 LRTLP-------YELGKLFQIQILGLHGNPLS 132
+ + K + L NP+
Sbjct: 254 ISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ 285
Score = 33.5 bits (75), Expect = 0.007
Identities = 22/134 (16%), Positives = 47/134 (35%), Gaps = 24/134 (17%)
Query: 1 MNDNNLTRLSGDISLLINLRTLDISNNKLRYLP---------------SEIGAVKNLSPD 45
+ D N+T + L +L L + NK+ + S +
Sbjct: 157 IADTNITTIPQ--GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGS 214
Query: 46 LWQFTHLTALYMNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSE-------IGDLIYL 98
L HL L++N+N L ++ G ++ ++ + + NN + + S
Sbjct: 215 LANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASY 274
Query: 99 RELCLNNNNLRTLP 112
+ L +N ++
Sbjct: 275 SGVSLFSNPVQYWE 288
Score = 31.2 bits (69), Expect = 0.046
Identities = 21/119 (17%), Positives = 43/119 (36%), Gaps = 17/119 (14%)
Query: 9 LSGDISLLINLRTLDISNNKLRYLPSEI---------------GAVKNLSPDLWQFTHLT 53
G + L+ L L +S N+L+ LP ++ K++ L Q +
Sbjct: 71 SPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVE 130
Query: 54 ALYMNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLRTLP 112
+ +G + L + I++ + +P + L EL L+ N + +
Sbjct: 131 LGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGL--PPSLTELHLDGNKITKVD 187
Score = 28.9 bits (63), Expect = 0.23
Identities = 6/62 (9%), Positives = 24/62 (38%), Gaps = 7/62 (11%)
Query: 47 WQFTHLTALYMNDNNLTRLS-------GDISLLINLRTLDISNNKLRYLPSEIGDLIYLR 99
++ +Y+++NN++ + G + + + + +N ++Y + +
Sbjct: 239 ADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVY 298
Query: 100 EL 101
Sbjct: 299 VR 300
Score = 27.7 bits (60), Expect = 0.68
Identities = 9/78 (11%), Positives = 27/78 (34%), Gaps = 3/78 (3%)
Query: 1 MNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDN 60
+N+N L ++ G ++ ++ + + NN + + S + + + + N
Sbjct: 226 LNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGY---NTKKASYSGVSLFSN 282
Query: 61 NLTRLSGDISLLINLRTL 78
+ S +
Sbjct: 283 PVQYWEIQPSTFRCVYVR 300
>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of
glycoprotein Ib alpha {Human (Homo sapiens) [TaxId:
9606]}
Length = 266
Score = 39.7 bits (91), Expect = 5e-05
Identities = 22/88 (25%), Positives = 28/88 (31%), Gaps = 2/88 (2%)
Query: 46 LWQFTHLTALYMNDNNLTRLSGDISLLINLRTLDIS--NNKLRYLPSEIGDLIYLRELCL 103
L L LY+ N L L + NN + L L L L
Sbjct: 120 LRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLL 179
Query: 104 NNNNLRTLPYELGKLFQIQILGLHGNPL 131
N+L T+P + LHGNP
Sbjct: 180 QENSLYTIPKGFFGSHLLPFAFLHGNPW 207
Score = 37.4 bits (85), Expect = 3e-04
Identities = 19/72 (26%), Positives = 25/72 (34%), Gaps = 2/72 (2%)
Query: 40 KNLSPDLWQFTHLTALYMNDNN--LTRLSGDISLLINLRTLDISNNKLRYLPSEIGDLIY 97
K L P L T NN +G ++ L NL TL + N L +P
Sbjct: 137 KTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHL 196
Query: 98 LRELCLNNNNLR 109
L L+ N
Sbjct: 197 LPFAFLHGNPWL 208
Score = 35.5 bits (80), Expect = 0.001
Identities = 11/74 (14%), Positives = 27/74 (36%), Gaps = 13/74 (17%)
Query: 12 DISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTRLS-GDIS 70
++S + + ++ L LP ++ T L++++N L S +
Sbjct: 5 EVSKVASHLEVNCDKRNLTALPPDLP------------KDTTILHLSENLLYTFSLATLM 52
Query: 71 LLINLRTLDISNNK 84
L L++ +
Sbjct: 53 PYTRLTQLNLDRAE 66
Score = 34.3 bits (77), Expect = 0.004
Identities = 14/73 (19%), Positives = 27/73 (36%), Gaps = 3/73 (4%)
Query: 68 DISLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLRTLPYE-LGKLFQIQILGL 126
++S + + ++ L LP ++ L L+ N L T L ++ L L
Sbjct: 5 EVSKVASHLEVNCDKRNLTALPPDLPKD--TTILHLSENLLYTFSLATLMPYTRLTQLNL 62
Query: 127 HGNPLSKDYMKIY 139
L+K +
Sbjct: 63 DRAELTKLQVDGT 75
Score = 33.1 bits (74), Expect = 0.008
Identities = 12/61 (19%), Positives = 22/61 (36%), Gaps = 3/61 (4%)
Query: 48 QFTHLTALYMNDNNLTRLSGDISLLINLRTLDISNNKLRYLP-SEIGDLIYLRELCLNNN 106
+ + + NLT L D+ + L +S N L + + L +L L+
Sbjct: 8 KVASHLEVNCDKRNLTALPPDLPK--DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRA 65
Query: 107 N 107
Sbjct: 66 E 66
Score = 29.7 bits (65), Expect = 0.12
Identities = 14/60 (23%), Positives = 21/60 (35%), Gaps = 11/60 (18%)
Query: 2 NDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNN 61
+ NLT L D+ + L +S N L L +T LT L ++
Sbjct: 18 DKRNLTALPPDLPK--DTTILHLSENLLYTFSLA---------TLMPYTRLTQLNLDRAE 66
Score = 26.6 bits (57), Expect = 1.3
Identities = 12/59 (20%), Positives = 21/59 (35%), Gaps = 10/59 (16%)
Query: 4 NNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNL 62
N +G ++ L NL TL + N L +P + L +++ N
Sbjct: 159 NLTELPAGLLNGLENLDTLLLQENSLYTIP----------KGFFGSHLLPFAFLHGNPW 207
Score = 24.7 bits (52), Expect = 6.7
Identities = 4/30 (13%), Positives = 9/30 (30%)
Query: 1 MNDNNLTRLSGDISLLINLRTLDISNNKLR 30
+ +N+L + L + N
Sbjct: 179 LQENSLYTIPKGFFGSHLLPFAFLHGNPWL 208
>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP
{Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}
Length = 313
Score = 39.3 bits (90), Expect = 6e-05
Identities = 14/63 (22%), Positives = 25/63 (39%), Gaps = 1/63 (1%)
Query: 47 WQFTHLTALYMNDNNLT-RLSGDISLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNN 105
+L L + +N + L ++ L L +L++S N L + G+L N
Sbjct: 241 GLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYAN 300
Query: 106 NNL 108
N
Sbjct: 301 NKC 303
Score = 39.3 bits (90), Expect = 8e-05
Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
Query: 74 NLRTLDISNNKLR-YLPSEIGDLIYLRELCLNNNNLRTLPYELGKLFQIQILGLHGNPL 131
NL LD+ NN++ LP + L +L L ++ NNL + G L + + N
Sbjct: 245 NLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKC 303
Score = 34.0 bits (76), Expect = 0.005
Identities = 10/63 (15%), Positives = 19/63 (30%), Gaps = 11/63 (17%)
Query: 1 MNDNNLT-RLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMND 59
+ +N + L ++ L L +L++S N L P +
Sbjct: 251 LRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEI----------PQGGNLQRFDVSAYAN 300
Query: 60 NNL 62
N
Sbjct: 301 NKC 303
Score = 31.6 bits (70), Expect = 0.030
Identities = 12/44 (27%), Positives = 16/44 (36%)
Query: 42 LSPDLWQFTHLTALYMNDNNLTRLSGDISLLINLRTLDISNNKL 85
L L Q L +L ++ NNL L +NNK
Sbjct: 260 LPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKC 303
Score = 26.3 bits (56), Expect = 1.8
Identities = 10/36 (27%), Positives = 13/36 (36%)
Query: 97 YLRELCLNNNNLRTLPYELGKLFQIQILGLHGNPLS 132
NN TLP L +L + L + N L
Sbjct: 246 LNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLC 281
>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo
sapiens) [TaxId: 9606]}
Length = 460
Score = 39.2 bits (89), Expect = 9e-05
Identities = 18/100 (18%), Positives = 42/100 (42%), Gaps = 17/100 (17%)
Query: 17 INLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLT-----RLSGDISL 71
+++++LDI +L S+ + L + ++D LT +S + +
Sbjct: 2 LDIQSLDIQCEEL----SDARWAELLP----LLQQCQVVRLDDCGLTEARCKDISSALRV 53
Query: 72 LINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLRTL 111
L L++ +N+L ++G L+ L + ++ L
Sbjct: 54 NPALAELNLRSNEL----GDVGVHCVLQGLQTPSCKIQKL 89
Score = 33.8 bits (75), Expect = 0.007
Identities = 19/117 (16%), Positives = 38/117 (32%), Gaps = 16/117 (13%)
Query: 1 MNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDN 60
+ G LR L +++ + + +L+ L L L +++N
Sbjct: 353 EDAGVRELCQGLGQPGSVLRVLWLADCDVSDS-----SCSSLAATLLANHSLRELDLSNN 407
Query: 61 NLTR------LSGDISLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLRTL 111
L + L L + + Y E+ D L+ L + +LR +
Sbjct: 408 CLGDAGILQLVESVRQPGCLLEQLVLYDI---YWSEEMEDR--LQALEKDKPSLRVI 459
Score = 31.5 bits (69), Expect = 0.033
Identities = 19/90 (21%), Positives = 37/90 (41%), Gaps = 11/90 (12%)
Query: 1 MNDNNLT--RLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMN 58
+ L+ R + + LL + + + + L +E K++S L L L +
Sbjct: 9 IQCEELSDARWAELLPLLQQCQVVRLDDCGL----TEARC-KDISSALRVNPALAELNLR 63
Query: 59 DNNLTRLSGDISLLINLRTLDISNNKLRYL 88
N L GD+ + L+ L + K++ L
Sbjct: 64 SNEL----GDVGVHCVLQGLQTPSCKIQKL 89
Score = 29.6 bits (64), Expect = 0.17
Identities = 17/103 (16%), Positives = 34/103 (33%), Gaps = 11/103 (10%)
Query: 47 WQFTHLTALYMNDNNLTRLSGDISLLINLRTLDISNNKL-----RYLPSEIGDLIYLREL 101
+ + G LR L +++ + L + + LREL
Sbjct: 343 LELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLREL 402
Query: 102 CLNNNNLRTL-PYELGKLFQ-----IQILGLHGNPLSKDYMKI 138
L+NN L +L + + ++ L L+ S++
Sbjct: 403 DLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDR 445
>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor
{Human (Homo sapiens) [TaxId: 9606]}
Length = 242
Score = 38.7 bits (88), Expect = 1e-04
Identities = 14/42 (33%), Positives = 19/42 (45%), Gaps = 3/42 (7%)
Query: 72 LINLRTLDISNNKLRYLPSEI-GDLIYLRELCLNNNNLRTLP 112
LDIS ++ LPS +L LR + NL+ LP
Sbjct: 200 ASGPVILDISRTRIHSLPSYGLENLKKLRA--RSTYNLKKLP 239
Score = 30.6 bits (67), Expect = 0.053
Identities = 13/50 (26%), Positives = 17/50 (34%), Gaps = 11/50 (22%)
Query: 16 LINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTRL 65
LDIS ++ LPS L L A + NL +L
Sbjct: 200 ASGPVILDISRTRIHSLPSYG---------LENLKKLRAR--STYNLKKL 238
Score = 30.3 bits (66), Expect = 0.077
Identities = 8/39 (20%), Positives = 15/39 (38%), Gaps = 2/39 (5%)
Query: 74 NLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLRTLP 112
+ R +K+ +PS++ EL LR +
Sbjct: 9 SNRVFLCQESKVTEIPSDL--PRNAIELRFVLTKLRVIQ 45
Score = 29.5 bits (64), Expect = 0.13
Identities = 7/41 (17%), Positives = 13/41 (31%), Gaps = 2/41 (4%)
Query: 51 HLTALYMNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSE 91
++ +T + D+ N L KLR +
Sbjct: 9 SNRVFLCQESKVTEIPSDLPR--NAIELRFVLTKLRVIQKG 47
Score = 28.7 bits (62), Expect = 0.28
Identities = 9/50 (18%), Positives = 15/50 (30%), Gaps = 4/50 (8%)
Query: 2 NDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTH 51
++ +T + D+ N L KLR + GA
Sbjct: 16 QESKVTEIPSDLPR--NAIELRFVLTKLRVIQK--GAFSGFGDLEKIEIS 61
Score = 26.8 bits (57), Expect = 1.0
Identities = 6/49 (12%), Positives = 14/49 (28%), Gaps = 12/49 (24%)
Query: 18 NLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTRLS 66
+ R +K+ +PS++ + L L +
Sbjct: 9 SNRVFLCQESKVTEIPSDL------------PRNAIELRFVLTKLRVIQ 45
>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 162
Score = 37.6 bits (86), Expect = 2e-04
Identities = 9/52 (17%), Positives = 20/52 (38%)
Query: 61 NLTRLSGDISLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLRTLP 112
L + + + R LD+ K+ + + L + ++N +R L
Sbjct: 6 ELIEQAAQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLD 57
Score = 32.2 bits (72), Expect = 0.015
Identities = 7/47 (14%), Positives = 16/47 (34%)
Query: 43 SPDLWQFTHLTALYMNDNNLTRLSGDISLLINLRTLDISNNKLRYLP 89
+ L + + + + L +D S+N++R L
Sbjct: 11 AAQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLD 57
Score = 30.3 bits (67), Expect = 0.055
Identities = 23/109 (21%), Positives = 36/109 (33%), Gaps = 10/109 (9%)
Query: 5 NLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTR 64
L + + + R LD+ K+ + + A+ +DN + +
Sbjct: 6 ELIEQAAQYTNAVRDRELDLRGYKIPVIENLGA----------TLDQFDAIDFSDNEIRK 55
Query: 65 LSGDISLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLRTLPY 113
L G L L +N R L L EL L NN+L L
Sbjct: 56 LDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGD 104
Score = 29.1 bits (64), Expect = 0.17
Identities = 7/52 (13%), Positives = 16/52 (30%), Gaps = 1/52 (1%)
Query: 80 ISNNKLRYLPSEIGDLIYLRELCLNNNNLRTLPYELGKLFQIQILGLHGNPL 131
++ + + + REL L + + L Q + N +
Sbjct: 3 LTAELIEQAAQYT-NAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEI 53
Score = 28.8 bits (63), Expect = 0.22
Identities = 13/111 (11%), Positives = 31/111 (27%)
Query: 1 MNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDN 60
+ + + + L +D S+N++R L + + + D
Sbjct: 25 LRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRIGEGLDQ 84
Query: 61 NLTRLSGDISLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLRTL 111
L L+ I +L L + ++ + L +
Sbjct: 85 ALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVI 135
>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes
[TaxId: 1639]}
Length = 227
Score = 34.6 bits (78), Expect = 0.002
Identities = 15/62 (24%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
Query: 44 PDLWQFTHLTALYMNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGDLIYLRELCL 103
L + LT L +DN ++ +S ++ L NL + + NN++ + + + L + L
Sbjct: 167 TPLANLSKLTTLKADDNKISDISP-LASLPNLIEVHLKNNQISDVSP-LANTSNLFIVTL 224
Query: 104 NN 105
N
Sbjct: 225 TN 226
Score = 29.2 bits (64), Expect = 0.17
Identities = 14/76 (18%), Positives = 27/76 (35%), Gaps = 3/76 (3%)
Query: 38 AVKNLSPDLWQFTHLTALYMNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGDLIY 97
A+ + PD + + +N+T + L + TL + + + L
Sbjct: 8 AINVIFPDP-ALANAIKIAAGKSNVTDTVT-QADLDGITTLSAFGTGVTTI-EGVQYLNN 64
Query: 98 LRELCLNNNNLRTLPY 113
L L L +N + L
Sbjct: 65 LIGLELKDNQITDLAP 80
Score = 29.2 bits (64), Expect = 0.19
Identities = 15/58 (25%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
Query: 69 ISLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLRTLPYELGKLFQIQILGL 126
++ L L TL +NK+ + + L L E+ L NN + + L + I+ L
Sbjct: 169 LANLSKLTTLKADDNKISDIS-PLASLPNLIEVHLKNNQISDVS-PLANTSNLFIVTL 224
Score = 25.8 bits (55), Expect = 2.4
Identities = 8/34 (23%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 1 MNDNNLTRLSGDISLLINLRTLDISNNKLRYLPS 34
+DN ++ +S ++ L NL + + NN++ +
Sbjct: 180 ADDNKISDISP-LASLPNLIEVHLKNNQISDVSP 212
>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo
sapiens) [TaxId: 9606]}
Length = 162
Score = 32.1 bits (72), Expect = 0.015
Identities = 28/136 (20%), Positives = 50/136 (36%), Gaps = 15/136 (11%)
Query: 4 NNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLT 63
+ +L +S + + LR P DL L +
Sbjct: 7 EQVEQLKLIMSKRYDGSQQALDLKGLRSDP-----------DLVAQNIDVVLNRRSSMAA 55
Query: 64 RLSGDISLLINLRTLDISNNKLRY---LPSEIGDLIYLRELCLNNNNLRTLPY-ELGKLF 119
L + L +L++SNN+L + S + L+ L L+ N L++ + K
Sbjct: 56 TLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL 115
Query: 120 QIQILGLHGNPLSKDY 135
+++ L L GN LS +
Sbjct: 116 KLEELWLDGNSLSDTF 131
>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae
(Chlamydomonas reinhardtii) [TaxId: 3055]}
Length = 198
Score = 31.2 bits (69), Expect = 0.034
Identities = 12/53 (22%), Positives = 23/53 (43%), Gaps = 1/53 (1%)
Query: 55 LYMNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNN 107
L+ + ++ +S L + L +S N + + S + + LR L L N
Sbjct: 30 LHGMIPPIEKMDATLSTLKACKHLALSTNNIEKISS-LSGMENLRILSLGRNL 81
Score = 25.8 bits (55), Expect = 2.4
Identities = 8/39 (20%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Query: 4 NNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNL 42
+ ++ +S L + L +S N + + S + ++NL
Sbjct: 35 PPIEKMDATLSTLKACKHLALSTNNIEKISS-LSGMENL 72
>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2
{Human (Homo sapiens) [TaxId: 9606]}
Length = 284
Score = 29.3 bits (64), Expect = 0.19
Identities = 18/108 (16%), Positives = 38/108 (35%), Gaps = 13/108 (12%)
Query: 20 RTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTRLSGDISLLINLRTLD 79
+TLD++ L P G + + + A + + + + ++ +D
Sbjct: 3 QTLDLTGKNL--HPDVTGRLLSQG--------VIAFRCPRSFMDQPLAEHFSPFRVQHMD 52
Query: 80 ISNNKLRY--LPSEIGDLIYLRELCLNNNNL-RTLPYELGKLFQIQIL 124
+SN+ + L + L+ L L L + L K + L
Sbjct: 53 LSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRL 100
>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain
{Fission yeast (Schizosaccharomyces pombe) [TaxId:
4896]}
Length = 344
Score = 29.1 bits (63), Expect = 0.26
Identities = 8/65 (12%), Positives = 25/65 (38%), Gaps = 5/65 (7%)
Query: 74 NLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNL-----RTLPYELGKLFQIQILGLHG 128
+L+ I+ + + + + + ++E+ L+ N + R L + ++I
Sbjct: 9 SLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSD 68
Query: 129 NPLSK 133
+
Sbjct: 69 IFTGR 73
Score = 28.3 bits (61), Expect = 0.45
Identities = 6/67 (8%), Positives = 20/67 (29%), Gaps = 6/67 (8%)
Query: 46 LWQFTHLTALYMNDNNLTR------LSGDISLLINLRTLDISNNKLRYLPSEIGDLIYLR 99
+ L L + N + + + +L L+++ N+ + ++ +
Sbjct: 269 KLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIREVF 328
Query: 100 ELCLNNN 106
Sbjct: 329 STRGRGE 335
Score = 27.9 bits (60), Expect = 0.60
Identities = 10/85 (11%), Positives = 29/85 (34%), Gaps = 5/85 (5%)
Query: 51 HLTALYMNDNNLTRLSGDISLLINLRTLDISNNKL-----RYLPSEIGDLIYLRELCLNN 105
L + + + + +++ + +S N + R+L I L ++
Sbjct: 9 SLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSD 68
Query: 106 NNLRTLPYELGKLFQIQILGLHGNP 130
+ E+ + ++ + L P
Sbjct: 69 IFTGRVKDEIPEALRLLLQALLKCP 93
Score = 27.5 bits (59), Expect = 0.79
Identities = 9/69 (13%), Positives = 25/69 (36%), Gaps = 5/69 (7%)
Query: 1 MNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDN 60
+ + + + +++ + +S N + A + LS ++ L +D
Sbjct: 15 ITTEDEKSVFAVLLEDDSVKEIVLSGNTI-----GTEAARWLSENIASKKDLEIAEFSDI 69
Query: 61 NLTRLSGDI 69
R+ +I
Sbjct: 70 FTGRVKDEI 78
Score = 26.8 bits (57), Expect = 1.2
Identities = 14/64 (21%), Positives = 26/64 (40%), Gaps = 6/64 (9%)
Query: 72 LINLRTLDISNNKL-----RYLPSEIGD-LIYLRELCLNNNNLRTLPYELGKLFQIQILG 125
I L+TL + N++ R L + I + + L L LN N + ++ ++
Sbjct: 272 NIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIREVFSTR 331
Query: 126 LHGN 129
G
Sbjct: 332 GRGE 335
Score = 25.2 bits (53), Expect = 4.5
Identities = 9/63 (14%), Positives = 21/63 (33%), Gaps = 4/63 (6%)
Query: 16 LINLRTLDISNNKLRYLPSEIGAVKNLSPDLWQFTHLTALYMNDNNLTRLSGDISLLINL 75
I L+TL + N++ + + L L +N N + + + +
Sbjct: 272 NIGLQTLRLQYNEI----ELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIREV 327
Query: 76 RTL 78
+
Sbjct: 328 FST 330
>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes
[TaxId: 1639]}
Length = 210
Score = 27.7 bits (60), Expect = 0.52
Identities = 9/43 (20%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Query: 43 SPDLWQFTHLTALYMNDNNLTRLSGDISLLINLRTLDISNNKL 85
+ + + + N++++ + G I L N+ L ++ NKL
Sbjct: 39 AVTQNELNSIDQIIANNSDIKSVQG-IQYLPNVTKLFLNGNKL 80
Score = 26.5 bits (57), Expect = 1.6
Identities = 10/38 (26%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
Query: 68 DISLLINLRTLDISNNKLRYLPSEIGDLIYLRELCLNN 105
++ L L+ L +S N + L + + L L L L +
Sbjct: 173 PLAGLTKLQNLYLSKNHISDLRA-LAGLKNLDVLELFS 209
Score = 25.0 bits (53), Expect = 4.8
Identities = 9/65 (13%), Positives = 28/65 (43%), Gaps = 2/65 (3%)
Query: 72 LINLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLRTLPYELGKLFQIQILGLHGNPL 131
++ + ++ +L + ++ NN++++++ + L + L L+GN L
Sbjct: 23 FAETIKDNLKKKSVTDAVTQ-NELNSIDQIIANNSDIKSV-QGIQYLPNVTKLFLNGNKL 80
Query: 132 SKDYM 136
+
Sbjct: 81 TDIKP 85
Score = 24.6 bits (52), Expect = 6.1
Identities = 10/40 (25%), Positives = 17/40 (42%), Gaps = 1/40 (2%)
Query: 89 PSEIGDLIYLRELCLNNNNLRTLPYELGKLFQIQILGLHG 128
+ L L+ L L+ N++ L L L + +L L
Sbjct: 171 IVPLAGLTKLQNLYLSKNHISDLR-ALAGLKNLDVLELFS 209
>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 284
Score = 27.5 bits (59), Expect = 0.73
Identities = 26/149 (17%), Positives = 47/149 (31%), Gaps = 21/149 (14%)
Query: 2 NDNNLTRLSGDISLLINLRTLDISNNKLRYLPSE-IGAVKNLSPDLWQFTHLTALYMNDN 60
L + I + + + N++ ++P+ A +NL+ L +
Sbjct: 19 PQQGLQAVPVGIPA--ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAF 76
Query: 61 NLTR----------------LSGDISLLINLRTLDISNNKLRYLPSEIGDLIY-LRELCL 103
L L TL + L+ L + + L+ L L
Sbjct: 77 TGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYL 136
Query: 104 NNNNLRTL-PYELGKLFQIQILGLHGNPL 131
+N L+ L L + L LHGN +
Sbjct: 137 QDNALQALPDDTFRDLGNLTHLFLHGNRI 165
Score = 24.8 bits (52), Expect = 5.3
Identities = 10/60 (16%), Positives = 23/60 (38%), Gaps = 4/60 (6%)
Query: 74 NLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNLR-TLPYELGKLFQIQILGLHGNPLS 132
L+ L +++N +L++ +++ + +LP L + L N L
Sbjct: 226 ALQYLRLNDNPWVCDCRARPLWAWLQKFRGSSSEVPCSLPQRLAGR---DLKRLAANDLQ 282
>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor
receptor, N-terminal domain {Human (Homo sapiens)
[TaxId: 9606]}
Length = 156
Score = 26.7 bits (57), Expect = 1.2
Identities = 5/35 (14%), Positives = 9/35 (25%)
Query: 74 NLRTLDISNNKLRYLPSEIGDLIYLRELCLNNNNL 108
L + + + L EL + N
Sbjct: 9 GSSGLRCTRDGALDSLHHLPGAENLTELYIENQQH 43
Score = 25.9 bits (55), Expect = 2.1
Identities = 24/119 (20%), Positives = 36/119 (30%), Gaps = 26/119 (21%)
Query: 44 PDLWQFTHLTALYMNDNNLTRLSGDISLLINLRTLDISNNK-LRYLPSEI-GDLIYLREL 101
PD + L + + NL L I N + L++L L LR L
Sbjct: 2 PDACCPHGSSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNL 61
Query: 102 CLN------------------------NNNLRTLPYELGKLFQIQILGLHGNPLSKDYM 136
+ N L +L ++ + +Q L L GNPL
Sbjct: 62 TIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLHCSCA 120
>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes
[TaxId: 1639]}
Length = 199
Score = 26.2 bits (56), Expect = 1.6
Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
Query: 44 PDLWQFTHLTALYMNDNNLTRLSGDISLLINLRTLDISNNKLRYLPSEIGDLIYLREL 101
L T L L + N +T L ++ L L LDIS+NK+ + + L L L
Sbjct: 144 SALSGLTSLQQLNFSSNQVTDLKP-LANLTTLERLDISSNKVSDIS-VLAKLTNLESL 199
Score = 26.2 bits (56), Expect = 1.6
Identities = 9/36 (25%), Positives = 16/36 (44%), Gaps = 1/36 (2%)
Query: 48 QFTHLTALYMNDNNLTRLSGDISLLINLRTLDISNN 83
+T L + + + G + L NL ++ SNN
Sbjct: 38 DLDQVTTLQADRLGIKSIDG-VEYLNNLTQINFSNN 72
>d1kkoa1 c.1.11.2 (A:161-411) beta-Methylaspartase {Citrobacter
amalonaticus [TaxId: 35703]}
Length = 251
Score = 24.1 bits (52), Expect = 8.2
Identities = 8/28 (28%), Positives = 13/28 (46%)
Query: 122 QILGLHGNPLSKDYMKIYNEPNGTQKLL 149
++L G + ++NE N T LL
Sbjct: 222 RMLIKPGMGFDEGLNIVFNEMNRTIALL 249
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.139 0.397
Gapped
Lambda K H
0.267 0.0428 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 547,806
Number of extensions: 24011
Number of successful extensions: 231
Number of sequences better than 10.0: 1
Number of HSP's gapped: 133
Number of HSP's successfully gapped: 101
Length of query: 157
Length of database: 2,407,596
Length adjustment: 78
Effective length of query: 79
Effective length of database: 1,336,656
Effective search space: 105595824
Effective search space used: 105595824
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.4 bits)