Query psy305
Match_columns 130
No_of_seqs 117 out of 378
Neff 5.1
Searched_HMMs 46136
Date Sat Aug 17 00:24:00 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy305.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/305hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3906|consensus 100.0 8.1E-39 1.8E-43 264.4 10.0 127 1-129 114-241 (399)
2 PF03301 Trp_dioxygenase: Tryp 100.0 7E-39 1.5E-43 269.6 4.5 125 1-127 93-217 (346)
3 TIGR03036 trp_2_3_diox tryptop 100.0 3E-31 6.5E-36 216.7 9.7 91 1-99 74-164 (264)
4 COG3483 TDO2 Tryptophan 2,3-di 100.0 4.1E-30 8.9E-35 205.9 8.7 94 1-102 72-165 (262)
5 PF08933 DUF1864: Domain of un 88.9 1.8 3.8E-05 37.9 7.0 93 2-94 188-293 (387)
6 PF07014 Hs1pro-1_C: Hs1pro-1 80.2 3.2 6.9E-05 34.3 4.4 46 2-47 94-146 (261)
7 PF01231 IDO: Indoleamine 2,3- 79.8 11 0.00024 32.9 8.0 104 5-116 203-349 (422)
8 PF11172 DUF2959: Protein of u 61.4 20 0.00042 28.9 4.9 21 32-53 4-24 (201)
9 PF06290 PsiB: Plasmid SOS inh 57.8 5.8 0.00013 30.4 1.3 19 10-28 6-24 (143)
10 PF02758 PYRIN: PAAD/DAPIN/Pyr 54.0 11 0.00023 25.5 2.0 36 11-46 6-43 (83)
11 PF07655 Secretin_N_2: Secreti 53.8 11 0.00025 26.2 2.2 18 101-118 67-84 (98)
12 PF14771 DUF4476: Domain of un 52.2 42 0.00091 22.8 4.8 68 15-87 3-72 (95)
13 PRK13701 psiB plasmid SOS inhi 47.1 14 0.00031 28.2 1.9 19 10-28 6-24 (144)
14 cd08321 Pyrin_ASC-like Pyrin D 40.0 18 0.0004 24.6 1.4 36 11-46 5-42 (82)
15 PF12162 STAT1_TAZ2bind: STAT1 39.8 27 0.00059 18.9 1.8 17 13-29 6-22 (23)
16 cd08780 Death_TRADD Death Doma 32.2 1.9E+02 0.004 20.6 6.1 29 18-53 1-34 (90)
17 PHA02688 ORF059 IMV protein VP 25.3 70 0.0015 27.6 2.8 69 40-114 215-290 (323)
18 PF11123 DNA_Packaging_2: DNA 23.9 54 0.0012 22.9 1.6 19 78-96 27-45 (82)
19 COG4573 GatZ Predicted tagatos 22.5 45 0.00097 29.4 1.2 29 8-36 53-81 (426)
20 PF08262 Lem_TRP: Leucophaea m 21.3 44 0.00095 14.7 0.5 8 30-37 1-8 (10)
21 PF12828 PXB: PX-associated; 21.2 1.1E+02 0.0024 22.9 3.0 42 80-121 62-107 (137)
22 PF07023 DUF1315: Protein of u 21.2 62 0.0013 23.1 1.5 18 13-30 4-21 (93)
23 PHA00425 DNA packaging protein 20.1 68 0.0015 22.6 1.5 20 78-97 29-48 (88)
No 1
>KOG3906|consensus
Probab=100.00 E-value=8.1e-39 Score=264.38 Aligned_cols=127 Identities=57% Similarity=0.994 Sum_probs=119.2
Q ss_pred ChHHHHHHHhhhhhcCCCHHHHHHHHHhcCCCCCCChHHHHHHHHHhCCCchhhhhcchh-hHhhhcCChHHHHHHHhhh
Q psy305 1 MLSVQILVDQVSILETMSPLDFMQFRDYLTPASGFQSLQFRLMENKLGLKSEHRVRYNQH-YSNVFHSNSEHLVALELSE 79 (130)
Q Consensus 1 ~~i~~~L~~~~~vletMtP~dF~~FR~~L~~aSGfQS~q~R~iE~~lG~k~~~r~~~~~~-~~~~f~~~~~~~~~l~~~~ 79 (130)
+.|+++|++|+.||+||||.||++||.+|.|||||||.|||.||+++|+..+.|++||.. |.++|. .+..+.+...+
T Consensus 114 ~~ILkLLv~Q~~iLeTMtpLDF~DFRkYL~PASGFQSLQFRllENKlGVlqe~Rv~YN~qhY~dvF~--dee~~~l~~sE 191 (399)
T KOG3906|consen 114 TKILKLLVEQITILETMTPLDFVDFRKYLTPASGFQSLQFRLLENKLGVLQERRVKYNAQHYKDVFN--DEELKTLNVSE 191 (399)
T ss_pred HHHHHHHHHHhhHHhhcCccchHHHHHhcCccccchhhhHHHHhhhhhhhhhhhccccHHHhhhccC--chhhHhhhccc
Confidence 369999999999999999999999999999999999999999999999999999999854 999994 46677788899
Q ss_pred cCCCHHHHHHHHHhhCCCCCCCCcchHHHHHHHHHHHHHHHHHhhhhccC
Q psy305 80 QEPSLLNLVEKWLERTPGLEKDGFDFWTKYQRGVQQMLDKRKDSALVRTD 129 (130)
Q Consensus 80 ~~pSL~d~~~~~L~R~pgl~~~~~nfw~ky~~~v~~~l~~~~~~~~~~~~ 129 (130)
++|||...+++||+|||||+..|||||.||+++|++.|++..++|+..++
T Consensus 192 ~eksLLeLve~WLERTPGLe~~gfnFW~K~eksv~r~Le~~~~~a~~~~~ 241 (399)
T KOG3906|consen 192 EEKSLLELVESWLERTPGLESTGFNFWIKYEKSVNRYLEDLAKQAADPSN 241 (399)
T ss_pred ccchHHHHHHHHHhcCCCCCcccchHHHHHHHHHHHHHHHHHHHhhCCcc
Confidence 99999999999999999999999999999999999999999999987654
No 2
>PF03301 Trp_dioxygenase: Tryptophan 2,3-dioxygenase; InterPro: IPR004981 This is a family of tryptophan 2,3-dioxygenase (1.13.11.11 from EC) enzymes involved in tryptophan metabolism, which catalyse the reaction: L-Tryptophan + O(2) = L-Formylkynurenine ; GO: 0004833 tryptophan 2,3-dioxygenase activity, 0005506 iron ion binding, 0016491 oxidoreductase activity, 0019441 tryptophan catabolic process to kynurenine, 0055114 oxidation-reduction process; PDB: 2NW9_A 2NW7_C 1YW0_C 3BK9_C 3E08_B 2NW8_A 2NOX_A.
Probab=100.00 E-value=7e-39 Score=269.64 Aligned_cols=125 Identities=53% Similarity=0.885 Sum_probs=75.3
Q ss_pred ChHHHHHHHhhhhhcCCCHHHHHHHHHhcCCCCCCChHHHHHHHHHhCCCchhhhhcchhhHhhhcCChHHHHHHHhhhc
Q psy305 1 MLSVQILVDQVSILETMSPLDFMQFRDYLTPASGFQSLQFRLMENKLGLKSEHRVRYNQHYSNVFHSNSEHLVALELSEQ 80 (130)
Q Consensus 1 ~~i~~~L~~~~~vletMtP~dF~~FR~~L~~aSGfQS~q~R~iE~~lG~k~~~r~~~~~~~~~~f~~~~~~~~~l~~~~~ 80 (130)
++|+++|+++|+||+||||.||++||++|||||||||+|||+||++||+|++.|++++++|.+.|.+ +..+.+.+...
T Consensus 93 ~~i~~~l~~~~~vL~TMTp~dF~~FR~~Lg~aSGfQS~qyR~iE~~lG~k~~~ri~~~~~y~~~~~~--~~~~~l~~~~~ 170 (346)
T PF03301_consen 93 VRILELLVQQFDVLETMTPEDFLEFRDYLGPASGFQSAQYRLIEFLLGNKDERRIKYNQQYKEAFND--EDRERLLRSHR 170 (346)
T ss_dssp HHHHHHHHHTHHHHTT--HHHHCCCGGGCTT--GGG-HHHHHHHHHCT---GG---------------------GGGGGT
T ss_pred HHHHHHHHHHHHHHccCCHHHHHHHHHHhCCCCCcccHHHHHHHHHHcCCCcccccchhccchhhhh--HHHHHHHhhhc
Confidence 3799999999999999999999999999999999999999999999999999999998779999954 44488999999
Q ss_pred CCCHHHHHHHHHhhCCCCCCCCcchHHHHHHHHHHHHHHHHHhhhhc
Q psy305 81 EPSLLNLVEKWLERTPGLEKDGFDFWTKYQRGVQQMLDKRKDSALVR 127 (130)
Q Consensus 81 ~pSL~d~~~~~L~R~pgl~~~~~nfw~ky~~~v~~~l~~~~~~~~~~ 127 (130)
+||+.+.+++||+|+||++.++||||+||+++|++++.+...++...
T Consensus 171 ~~s~~~~~~~wLertPgle~~~f~fw~~~~~sv~d~~~~~~~~~~~~ 217 (346)
T PF03301_consen 171 EPSLLHLVLRWLERTPGLEEDGFNFWQKYKKSVYDMLLRLLARAGFP 217 (346)
T ss_dssp T-HHHHHHHHHHHHS-----------------HHHHHHHHHHHTT--
T ss_pred CCCHHHHHHHHHHhCccccccccchhhhhHHHHHHHHHHHHHHhccc
Confidence 99999999999999999999999999999999999999998887643
No 3
>TIGR03036 trp_2_3_diox tryptophan 2,3-dioxygenase. Members of this family are tryptophan 2,3-dioxygenase, as confirmed by several experimental characterizations, and by conserved operon structure for many of the other members. This enzyme represents the first of a two-step degradation to L-kynurenine, and a three-step pathway (via kynurenine) to anthranilate plus alanine.
Probab=99.97 E-value=3e-31 Score=216.74 Aligned_cols=91 Identities=32% Similarity=0.425 Sum_probs=85.7
Q ss_pred ChHHHHHHHhhhhhcCCCHHHHHHHHHhcCCCCCCChHHHHHHHHHhCCCchhhhhcchhhHhhhcCChHHHHHHHhhhc
Q psy305 1 MLSVQILVDQVSILETMSPLDFMQFRDYLTPASGFQSLQFRLMENKLGLKSEHRVRYNQHYSNVFHSNSEHLVALELSEQ 80 (130)
Q Consensus 1 ~~i~~~L~~~~~vletMtP~dF~~FR~~L~~aSGfQS~q~R~iE~~lG~k~~~r~~~~~~~~~~f~~~~~~~~~l~~~~~ 80 (130)
++|+++|+++|+||+||||.||++||++||+||||||+|||+||++||+|++.+ +++|.+.|+.++.|+++++
T Consensus 74 ~~i~~~L~~~~~vL~tMtp~df~~FR~~Lg~aSGfQS~qyR~iE~~lG~k~~~~-------l~~~~~~p~~~~~L~~~l~ 146 (264)
T TIGR03036 74 SRIQEQLNQAWDVLATMTPAEYSEFRDALGQSSGFQSYQYREIEFLLGNKNAAM-------LRPHEHDPELHAELEAALH 146 (264)
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHhCCcchhhhHHHHHHHHHhCCCcHHH-------hccccCChHHHHHHHHHhc
Confidence 379999999999999999999999999999999999999999999999999864 6678889999999999999
Q ss_pred CCCHHHHHHHHHhhCCCCC
Q psy305 81 EPSLLNLVEKWLERTPGLE 99 (130)
Q Consensus 81 ~pSL~d~~~~~L~R~pgl~ 99 (130)
+|||||.+++||+|+ |++
T Consensus 147 ~PSLyd~~l~~L~r~-G~~ 164 (264)
T TIGR03036 147 APSLYDEALRLLARR-GFP 164 (264)
T ss_pred CCCHHHHHHHHHHHc-CCC
Confidence 999999999999998 664
No 4
>COG3483 TDO2 Tryptophan 2,3-dioxygenase (vermilion) [Amino acid transport and metabolism]
Probab=99.96 E-value=4.1e-30 Score=205.93 Aligned_cols=94 Identities=33% Similarity=0.468 Sum_probs=88.2
Q ss_pred ChHHHHHHHhhhhhcCCCHHHHHHHHHhcCCCCCCChHHHHHHHHHhCCCchhhhhcchhhHhhhcCChHHHHHHHhhhc
Q psy305 1 MLSVQILVDQVSILETMSPLDFMQFRDYLTPASGFQSLQFRLMENKLGLKSEHRVRYNQHYSNVFHSNSEHLVALELSEQ 80 (130)
Q Consensus 1 ~~i~~~L~~~~~vletMtP~dF~~FR~~L~~aSGfQS~q~R~iE~~lG~k~~~r~~~~~~~~~~f~~~~~~~~~l~~~~~ 80 (130)
++||++|++.|+||+||||.||++||+.||+||||||+|||+||++||+|+.. +..+|.|.|+.+..|+++++
T Consensus 72 ~ri~eql~~aw~Vl~TMTp~dyl~fR~~lgqsSGFQS~qyR~iEfllGnkn~a-------ll~pH~hR~e~~~~L~aal~ 144 (262)
T COG3483 72 SRIFEQLNQAWDVLATMTPADYLDFRDALGQSSGFQSYQYREIEFLLGNKNAA-------LLKPHKHRAELLARLKAALE 144 (262)
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHhcccccchHHHHHHHHHHHcCcchh-------hhCccccCHHHHHHHHHHhc
Confidence 47999999999999999999999999999999999999999999999999884 77788999999999999999
Q ss_pred CCCHHHHHHHHHhhCCCCCCCC
Q psy305 81 EPSLLNLVEKWLERTPGLEKDG 102 (130)
Q Consensus 81 ~pSL~d~~~~~L~R~pgl~~~~ 102 (130)
+|||||+++++++|. |++...
T Consensus 145 ~pslydeairllar~-g~~v~a 165 (262)
T COG3483 145 TPSLYDEAIRLLARQ-GLDVGA 165 (262)
T ss_pred CCccHHHHHHHHHhc-CCCCcH
Confidence 999999999999996 885543
No 5
>PF08933 DUF1864: Domain of unknown function (DUF1864); InterPro: IPR015029 This protein has no known function. It is found in various hypothetical and conserved domain proteins. ; PDB: 2NWB_A 1ZEE_B 2X66_A 2V7L_A 2V7M_A 2V7K_A 2X67_A 2X68_A 2V7J_A 2V7I_A.
Probab=88.86 E-value=1.8 Score=37.90 Aligned_cols=93 Identities=19% Similarity=0.232 Sum_probs=65.6
Q ss_pred hHHHHHHHhhhhh-cCCCH-HHHHHHHHhcCC----------CCCCChHHHHHHHHHhCCCchhhhhcchhhHhhhcCC-
Q psy305 2 LSVQILVDQVSIL-ETMSP-LDFMQFRDYLTP----------ASGFQSLQFRLMENKLGLKSEHRVRYNQHYSNVFHSN- 68 (130)
Q Consensus 2 ~i~~~L~~~~~vl-etMtP-~dF~~FR~~L~~----------aSGfQS~q~R~iE~~lG~k~~~r~~~~~~~~~~f~~~- 68 (130)
..++.++++.+.+ +.++| .-|...|++..| +..=|=++.-.|+.+||.++.+--.|.+-..+.|-..
T Consensus 188 ~~L~~vv~s~~~l~~~ldp~~Ff~~vRPYykP~rVG~~~Y~GpnA~d~agi~vIDllLg~c~~~~p~Ysq~lvdkf~Ym~ 267 (387)
T PF08933_consen 188 QALEDVVESNDYLFRRLDPERFFYCVRPYYKPYRVGGRSYRGPNAGDFAGINVIDLLLGLCQANDPAYSQFLVDKFLYMM 267 (387)
T ss_dssp HHHHHHHHHHHHHHCCS-HHHHHHHTGGGC--EEETTEEE----CCGSCHHHHHHHHCTTTTTTSHHHHHHHHCCGGGS-
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHhcccccceeeCCeeecCCCccccccchHHHHHHhcccCCChHHHHHHHHHhcccC
Confidence 3577888999998 99999 556778876543 2233667788999999999876544433344445554
Q ss_pred hHHHHHHHhhhcCCCHHHHHHHHHhh
Q psy305 69 SEHLVALELSEQEPSLLNLVEKWLER 94 (130)
Q Consensus 69 ~~~~~~l~~~~~~pSL~d~~~~~L~R 94 (130)
|+..+-++.....|||-|.++.-...
T Consensus 268 P~dqailr~~mr~~SL~d~~l~~~~~ 293 (387)
T PF08933_consen 268 PEDQAILRDCMRRPSLMDRFLAEAGA 293 (387)
T ss_dssp HHHHHHHHHHCTS--HHHHHHHCHHH
T ss_pred HHHHHHHHHHcCCchHHHHHHHhhcc
Confidence 99999999999999999999877654
No 6
>PF07014 Hs1pro-1_C: Hs1pro-1 protein C-terminus; InterPro: IPR009743 This entry represents the C terminus (approximately 270 residues) of a number of plant Hs1pro-1 proteins, which are believed to confer nematode resistance [].
Probab=80.23 E-value=3.2 Score=34.32 Aligned_cols=46 Identities=20% Similarity=0.270 Sum_probs=34.4
Q ss_pred hHHHHHHHhhhhhcCCCHHHHHHHHHhcCCCCC-------CChHHHHHHHHHh
Q psy305 2 LSVQILVDQVSILETMSPLDFMQFRDYLTPASG-------FQSLQFRLMENKL 47 (130)
Q Consensus 2 ~i~~~L~~~~~vletMtP~dF~~FR~~L~~aSG-------fQS~q~R~iE~~l 47 (130)
+|.++|++--++.--|+|.||+.....|.--|. |-|-..+++-..|
T Consensus 94 RiWKLL~eieDlhllMDPdDFlrLK~qL~iks~~~~~afCfRS~~Lvevtk~c 146 (261)
T PF07014_consen 94 RIWKLLAEIEDLHLLMDPDDFLRLKKQLAIKSAPETAAFCFRSKELVEVTKMC 146 (261)
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHhccccCCCCcchhhhHHHHHHHHHHH
Confidence 688999999999999999999999988864332 4444444444444
No 7
>PF01231 IDO: Indoleamine 2,3-dioxygenase; InterPro: IPR000898 Indoleamine 2,3-dioxgyenase (IDO, 1.13.11.42 from EC) [] is a cytosolic haem protein which, together with the hepatic enzyme tryptophan 2,3-dioxygenase, catalyzes the conversion of tryptophan and other indole derivatives to kynurenines. The physiological role of IDO is not fully understood but is of great interest, because IDO is widely distributed in human tissues, can be up-regulated via cytokines such as interferon-gamma, and can thereby modulate the levels of tryptophan, which is vital for cell growth. The degradative action of IDO on tryptophan leads to cell death by starvation of this essential and relatively scarce amino acid. IDO is a haem-containing enzyme of about 400 amino acids. Site-directed mutagenesis showed His346 (P14902 from SWISSPROT) to be essential for haem binding, indicating that this histidine residue may be the proximal ligand. Mutation of Asp274 also compromised the ability of IDO to bind haem, suggesting that Asp274 may coordinate to haem directly as the distal ligand or is essential in maintaining the conformation of the haem pocket []. Other proteins that are evolutionarily related to IDO include yeast hypothetical protein YJR078w; and myoglobin from the red muscle of the archaeogastropodic molluscs, Nordotis madaka (Giant abalone) and Sulculus diversicolor [, ]. These unusual globins lack enzymatic activity but have kept the haem group.; GO: 0020037 heme binding; PDB: 2D0U_A 2D0T_A.
Probab=79.80 E-value=11 Score=32.88 Aligned_cols=104 Identities=14% Similarity=0.171 Sum_probs=55.2
Q ss_pred HHHHHhhhhh-cCCCHHH-HHHHHHhcCC---------------------------CCCCChHHHHHHHHHhCCCchhhh
Q psy305 5 QILVDQVSIL-ETMSPLD-FMQFRDYLTP---------------------------ASGFQSLQFRLMENKLGLKSEHRV 55 (130)
Q Consensus 5 ~~L~~~~~vl-etMtP~d-F~~FR~~L~~---------------------------aSGfQS~q~R~iE~~lG~k~~~r~ 55 (130)
+-|...+.-| +..+|.. |..+|+.|.. +||=||.=+..|-..||+++...-
T Consensus 203 ~~i~~~l~rm~e~~dp~~FY~~iRpfl~G~~~~~~~glp~Gv~yeg~~~~~~~~~G~S~aQSsli~~lD~~LGV~H~~~~ 282 (422)
T PF01231_consen 203 ERITALLERMYERCDPHVFYHRIRPFLAGWKNMPAAGLPNGVIYEGVSGEPRKYSGGSAAQSSLIQALDAFLGVDHSPTG 282 (422)
T ss_dssp HHHHHHHTTHHHH--HHHHHHTHHHHT--BSS-GG--GTT-BEETTT-SS-B-B----GGG-HHHHHHHHHTT--TT-SS
T ss_pred HHHHHHHHHHhccCCchhheehhhhhhhccCCCccccCCCCeeeeCCCCCcCcccCcCcccccHHHHHHHHhCCCCCCCC
Confidence 3344444444 7778999 6889988753 466799999999999999876542
Q ss_pred h------------cchhhHh-hhcCChHHHHHHHhh-hcCCCHHHHHHHHHhhCCCCCCCCcchHHHHHHHHHHH
Q psy305 56 R------------YNQHYSN-VFHSNSEHLVALELS-EQEPSLLNLVEKWLERTPGLEKDGFDFWTKYQRGVQQM 116 (130)
Q Consensus 56 ~------------~~~~~~~-~f~~~~~~~~~l~~~-~~~pSL~d~~~~~L~R~pgl~~~~~nfw~ky~~~v~~~ 116 (130)
. -...|++ .-.+.|..|.+.-.. .+.+++.+.+..--.. .....-|...|.++
T Consensus 283 ~~~~~~~~~~~~~~~~~fl~~mr~YMP~~HR~FL~~l~~~~~iR~~v~~~~~~--------~~l~~aYn~~v~aL 349 (422)
T PF01231_consen 283 QRKSPAPSSSSKDPETAFLEEMRRYMPPPHRRFLEHLESPPSIRSFVLSSGDD--------SELREAYNACVDAL 349 (422)
T ss_dssp ------------SHHHHHHHHHGGGS-HHHHHHHHHHHTS--HHHHHHTTT-H---------HHHHHHHHHHHHH
T ss_pred ccccccccccccchHHHHHHHHHhcCCHHHHHHHHHHhccCChHHHHHhccch--------HHHHHHHHHHHHHH
Confidence 1 0112333 334466666554444 4448888887532111 15777788887554
No 8
>PF11172 DUF2959: Protein of unknown function (DUF2959); InterPro: IPR021342 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=61.44 E-value=20 Score=28.95 Aligned_cols=21 Identities=29% Similarity=0.512 Sum_probs=17.5
Q ss_pred CCCCChHHHHHHHHHhCCCchh
Q psy305 32 ASGFQSLQFRLMENKLGLKSEH 53 (130)
Q Consensus 32 aSGfQS~q~R~iE~~lG~k~~~ 53 (130)
-+|+||+.|-.+|. +|+....
T Consensus 4 l~gCqsaYY~amEk-vG~hKRd 24 (201)
T PF11172_consen 4 LTGCQSAYYSAMEK-VGVHKRD 24 (201)
T ss_pred HHHhHHHHHHHHHH-hCCchhh
Confidence 37999999999999 4987653
No 9
>PF06290 PsiB: Plasmid SOS inhibition protein (PsiB); InterPro: IPR009385 This family consists of several plasmid SOS inhibition protein (PsiB) sequences [].; PDB: 3NCT_B.
Probab=57.77 E-value=5.8 Score=30.36 Aligned_cols=19 Identities=26% Similarity=0.508 Sum_probs=14.2
Q ss_pred hhhhhcCCCHHHHHHHHHh
Q psy305 10 QVSILETMSPLDFMQFRDY 28 (130)
Q Consensus 10 ~~~vletMtP~dF~~FR~~ 28 (130)
..++|.||+|.||-++|+.
T Consensus 6 tl~~L~tm~a~elE~~R~~ 24 (143)
T PF06290_consen 6 TLEVLKTMSAQELEDYRAA 24 (143)
T ss_dssp -HHHHHH--HHHHHHHHHH
T ss_pred hHHHHhhcCHHHHHHHHHh
Confidence 3578999999999999975
No 10
>PF02758 PYRIN: PAAD/DAPIN/Pyrin domain; InterPro: IPR004020 Pyrin domain was identified as putative protein-protein interaction domain at the N-terminal region of several proteins thought to function in apoptotic and inflammatory signalling pathways. Using secondary structure prediction and potential-based fold recognition methods, the PYRIN domain is predicted to be a member of the six-helix bundle death domain-fold superfamily that includes death domains (DDs), death effector domains (DEDs), and caspase recruitment domains (CARDs). Members of the death domain-fold superfamily are well established mediators of protein-protein interactions found in many proteins involved in apoptosis and inflammation, indicating further that the PYRIN domains serve a similar function. Comparison of a circular dichroism spectrum of the PYRIN domain of CARD7/DEFCAP/NAC/NALP1 with spectra of several proteins known to adopt the death domain-fold provides experimental support for the structure prediction [] It is found in interferon-inducible proteins, pyrin and myeloid cell nuclear differentiation antigen.; PDB: 2DO9_A 2YU0_A 2KN6_A 1UCP_A 2L6A_A 2KM6_A 1PN5_A 2DBG_A 3QF2_B 2HM2_Q.
Probab=54.01 E-value=11 Score=25.46 Aligned_cols=36 Identities=25% Similarity=0.368 Sum_probs=30.2
Q ss_pred hhhhcCCCHHHHHHHHHhc--CCCCCCChHHHHHHHHH
Q psy305 11 VSILETMSPLDFMQFRDYL--TPASGFQSLQFRLMENK 46 (130)
Q Consensus 11 ~~vletMtP~dF~~FR~~L--~~aSGfQS~q~R~iE~~ 46 (130)
+.+|+.|++.+|..|+-.| ....|+.+.-...+|..
T Consensus 6 l~~Le~L~~~efk~FK~~L~~~~~~~~~~Ip~~~le~a 43 (83)
T PF02758_consen 6 LWYLEELSEEEFKRFKWLLKEPVKEGFPPIPRGELEKA 43 (83)
T ss_dssp HHHHHTS-HHHHHHHHHHHHSTSSTTTCSSSHCHHHHS
T ss_pred HHHHHhCCHHHHHHHHHHhcchhhcCCCCCCHHHHhhC
Confidence 4678999999999999999 77788888888888864
No 11
>PF07655 Secretin_N_2: Secretin N-terminal domain; InterPro: IPR011514 This is a short domain found in bacterial type II/III secretory system proteins. The architecture of these proteins suggests that this family may be functionally analogous to IPR005644 from INTERPRO.; GO: 0009297 pilus assembly, 0019867 outer membrane
Probab=53.77 E-value=11 Score=26.23 Aligned_cols=18 Identities=33% Similarity=0.706 Sum_probs=15.8
Q ss_pred CCcchHHHHHHHHHHHHH
Q psy305 101 DGFDFWTKYQRGVQQMLD 118 (130)
Q Consensus 101 ~~~nfw~ky~~~v~~~l~ 118 (130)
..++||...++.|..||.
T Consensus 67 s~~dfW~~L~~~l~~ilg 84 (98)
T PF07655_consen 67 SKSDFWEDLQKTLQAILG 84 (98)
T ss_pred ECCchHHHHHHHHHHHhC
Confidence 456999999999999994
No 12
>PF14771 DUF4476: Domain of unknown function (DUF4476)
Probab=52.25 E-value=42 Score=22.76 Aligned_cols=68 Identities=25% Similarity=0.359 Sum_probs=43.9
Q ss_pred cCCCHHHHHHHHHhcCCCCCCChHHHHHHHHHhCCCchhhhhcch--hhHhhhcCChHHHHHHHhhhcCCCHHHH
Q psy305 15 ETMSPLDFMQFRDYLTPASGFQSLQFRLMENKLGLKSEHRVRYNQ--HYSNVFHSNSEHLVALELSEQEPSLLNL 87 (130)
Q Consensus 15 etMtP~dF~~FR~~L~~aSGfQS~q~R~iE~~lG~k~~~r~~~~~--~~~~~f~~~~~~~~~l~~~~~~pSL~d~ 87 (130)
.-|++.+|..|...|... +|.+-+...++..+..... ....+ .++..|..+.+-.+.++.. .|.++|-
T Consensus 3 ~~m~~~~f~~~~~~lk~~-~fd~dkl~~l~~~~~~~~~--~T~~Qv~~il~~f~fd~~kl~~lk~l--~p~i~D~ 72 (95)
T PF14771_consen 3 RPMSDNDFEQFLEQLKKE-SFDSDKLKVLEAAAKTNNC--FTCAQVKQILSLFSFDNDKLKALKLL--YPYIVDP 72 (95)
T ss_pred CCCCHHHHHHHHHHHHcC-CCcHHHHHHHHHHHhcCCc--eeHHHHHHHHHHcCCCHHHHHHHHHH--hhhccCH
Confidence 359999999999999555 8999999999999866441 12222 2666665554433333322 3444443
No 13
>PRK13701 psiB plasmid SOS inhibition protein B; Provisional
Probab=47.12 E-value=14 Score=28.23 Aligned_cols=19 Identities=26% Similarity=0.511 Sum_probs=16.7
Q ss_pred hhhhhcCCCHHHHHHHHHh
Q psy305 10 QVSILETMSPLDFMQFRDY 28 (130)
Q Consensus 10 ~~~vletMtP~dF~~FR~~ 28 (130)
.+++|.||++.+|-++|+.
T Consensus 6 tl~~l~tM~a~ElEd~R~~ 24 (144)
T PRK13701 6 TLNVLQTMSAQEYEDIRAA 24 (144)
T ss_pred cHHHHhccCHHHHHHHHHH
Confidence 4678999999999999984
No 14
>cd08321 Pyrin_ASC-like Pyrin Death Domain found in ASC. Pyrin Death Domain found in ASC (Apoptosis-associated speck-like protein containing a CARD) and similar proteins. ASC is an adaptor molecule that functions in the assembly of the 'inflammasome', a multiprotein platform, which is responsible for caspase-1 activation and regulation of IL-1beta maturation. ASC contains two domains from the Death Domain (DD) superfamily, an N-terminal pyrin-like domain and a C-terminal Caspase activation and recruitment domain (CARD). Through these 2 domains, ASC serves as an adaptor for inflammasome integrity and oligomerizes to form supramolecular assemblies. Other members of this subfamily are associated with ATPase domains and their function remains unknown. In general, Pyrin is a subfamily of the DD superfamily and functions in several signaling pathways. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by se
Probab=40.00 E-value=18 Score=24.61 Aligned_cols=36 Identities=22% Similarity=0.336 Sum_probs=29.7
Q ss_pred hhhhcCCCHHHHHHHHHhcCCCC--CCChHHHHHHHHH
Q psy305 11 VSILETMSPLDFMQFRDYLTPAS--GFQSLQFRLMENK 46 (130)
Q Consensus 11 ~~vletMtP~dF~~FR~~L~~aS--GfQS~q~R~iE~~ 46 (130)
...|+-|+..+|.+|+..|..-. |+.+.-.-.||..
T Consensus 5 l~~Le~L~~~ElkkFK~~L~~~~~~g~~~Ip~~~le~a 42 (82)
T cd08321 5 LDALEDLEEDELKKFKWKLRDIPLEGFPRIPRGELENA 42 (82)
T ss_pred HHHHHHhCHHHHHHHHHHHhhhhhccCCCCChHhhccC
Confidence 46789999999999999998643 8888888887654
No 15
>PF12162 STAT1_TAZ2bind: STAT1 TAZ2 binding domain; InterPro: IPR022752 This entry represents the C-terminal domain of STAT1, which selectively binds the TAZ2 domain of CRB (CREB-binding protein) []. This group of eukaryotic proteins is approximately 20 amino acids in length, and is found in association with PF02865 from PFAM, PF00017 from PFAM, PF01017 from PFAM, PF02864 from PFAM. By binding to CRB, it becomes a transcriptional activator and can initiate transcription of certain genes. ; GO: 0003700 sequence-specific DNA binding transcription factor activity; PDB: 2KA6_B.
Probab=39.82 E-value=27 Score=18.92 Aligned_cols=17 Identities=24% Similarity=0.401 Sum_probs=10.1
Q ss_pred hhcCCCHHHHHHHHHhc
Q psy305 13 ILETMSPLDFMQFRDYL 29 (130)
Q Consensus 13 vletMtP~dF~~FR~~L 29 (130)
-|--|+|.||.++....
T Consensus 6 nmmPMSPddy~~l~~~V 22 (23)
T PF12162_consen 6 NMMPMSPDDYDELERMV 22 (23)
T ss_dssp S---S-HHHHHHHHHHH
T ss_pred cccCCCHHHHHHHHHhh
Confidence 35579999999887653
No 16
>cd08780 Death_TRADD Death Domain of Tumor Necrosis Factor Receptor 1-Associated Death Domain protein. Death domain (DD) of TRADD (TNF Receptor 1-Associated Death Domain or TNFRSF1A-associated via death domain) protein. TRADD is a central signaling adaptor for TNF-receptor 1 (TNFR1), mediating activation of Nuclear Factor -kappaB (NF-kB) and c-Jun N-terminal kinase (JNK), as well as caspase-dependent apoptosis. It also carries important immunological roles including germinal center formation, DR3-mediated T-cell stimulation, and TNFalpha-mediated inflammatory responses. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into s
Probab=32.16 E-value=1.9e+02 Score=20.58 Aligned_cols=29 Identities=17% Similarity=0.339 Sum_probs=25.5
Q ss_pred CHHHHHHHHHhcCCCCCCChHHHHHHHHHhC-----CCchh
Q psy305 18 SPLDFMQFRDYLTPASGFQSLQFRLMENKLG-----LKSEH 53 (130)
Q Consensus 18 tP~dF~~FR~~L~~aSGfQS~q~R~iE~~lG-----~k~~~ 53 (130)
||.||..|++.+| -+|+.+-..|| ++++.
T Consensus 1 ~~~~~q~~~~nvG-------r~WK~laR~Lg~~cral~d~~ 34 (90)
T cd08780 1 TPADQQHFAKSVG-------KKWKPVGRSLQKNCRALRDPA 34 (90)
T ss_pred CHHHHHHHHHHHh-------HHHHHHHHHHcccccccchhH
Confidence 7999999999997 59999999999 66653
No 17
>PHA02688 ORF059 IMV protein VP55; Provisional
Probab=25.26 E-value=70 Score=27.58 Aligned_cols=69 Identities=23% Similarity=0.447 Sum_probs=42.3
Q ss_pred HHHHHHHhCCCchhhhhc-chh-hHhhhcCChHHHHHHHhhhcCCCHHHHHHHHHhhC-CCC----CCCCcchHHHHHHH
Q psy305 40 FRLMENKLGLKSEHRVRY-NQH-YSNVFHSNSEHLVALELSEQEPSLLNLVEKWLERT-PGL----EKDGFDFWTKYQRG 112 (130)
Q Consensus 40 ~R~iE~~lG~k~~~r~~~-~~~-~~~~f~~~~~~~~~l~~~~~~pSL~d~~~~~L~R~-pgl----~~~~~nfw~ky~~~ 112 (130)
--.||..+|+.+. -+ +.. |. .|++.-.-..+.....+||+..+.+|++++ ||. ..+=|.|+++|-=+
T Consensus 215 i~riEn~l~InR~---VL~~a~~yV---~hd~~lvs~~R~~~~~~~lwsrl~~Wla~~~P~~~y~lttPLfSfFGlfDIn 288 (323)
T PHA02688 215 IYRIENELGINRQ---VLNNASKYV---EHDYRLVSEKRVKEMKNSLWSRLGTWLAKRYPGFYYFLTTPLFSFFGLFDIN 288 (323)
T ss_pred hHhhhhhccchhh---hhcCCccee---ecchhhhhHhhhhhhhhhHHHHHHHHHHhhCCchheeecchHHHhhccchhH
Confidence 3456777777532 22 111 22 233333333444666799999999999886 776 44557888888766
Q ss_pred HH
Q psy305 113 VQ 114 (130)
Q Consensus 113 v~ 114 (130)
|-
T Consensus 289 v~ 290 (323)
T PHA02688 289 VI 290 (323)
T ss_pred HH
Confidence 53
No 18
>PF11123 DNA_Packaging_2: DNA packaging protein ; InterPro: IPR024345 This entry represents Gp18 (gene 18 product), also known as DNA maturase A, from T7-like bacteriophages. In Bacteriophage T3, this protein is required for DNA packaging and functions in a complex with Gp19 [].
Probab=23.92 E-value=54 Score=22.86 Aligned_cols=19 Identities=32% Similarity=0.576 Sum_probs=16.7
Q ss_pred hhcCCCHHHHHHHHHhhCC
Q psy305 78 SEQEPSLLNLVEKWLERTP 96 (130)
Q Consensus 78 ~~~~pSL~d~~~~~L~R~p 96 (130)
..++|-||.++.++|+|..
T Consensus 27 ekRsPQLYnAI~k~L~RHk 45 (82)
T PF11123_consen 27 EKRSPQLYNAIGKLLDRHK 45 (82)
T ss_pred hhcChHHHHHHHHHHHHcc
Confidence 4568999999999999974
No 19
>COG4573 GatZ Predicted tagatose 6-phosphate kinase [Carbohydrate transport and metabolism]
Probab=22.55 E-value=45 Score=29.43 Aligned_cols=29 Identities=31% Similarity=0.417 Sum_probs=23.3
Q ss_pred HHhhhhhcCCCHHHHHHHHHhcCCCCCCC
Q psy305 8 VDQVSILETMSPLDFMQFRDYLTPASGFQ 36 (130)
Q Consensus 8 ~~~~~vletMtP~dF~~FR~~L~~aSGfQ 36 (130)
|+||.=-.+|||.||..|=..+...-||-
T Consensus 53 Vnq~GGYTGMTP~DFr~fV~aiA~~~gfp 81 (426)
T COG4573 53 VNQFGGYTGMTPADFRGFVFAIADKLGFP 81 (426)
T ss_pred ccccCCcCCCChHHHHHHHHHHHHHhCCc
Confidence 45666668999999999988888777774
No 20
>PF08262 Lem_TRP: Leucophaea maderae tachykinin-related peptide ; InterPro: IPR013206 These peptides are designated Leucophaea maderae (Madeira cockroach) tachykinin-related peptides (Lem TRPs). Some were isolated from the midgut of L. maderae, whereas others appear to be brain specific. The Lem TRPs of the brain are myotropic and induce increases in the amplitude and frequency of spontaneous contractions and tonus of hindgut muscle in L. maderae []. They were also isolated from brain-corpora, cardiaca-corpora, allata-suboesophageal ganglion extracts of Locusta migratoria (Migratory locust). They stimulate visceral muscle contractions of the oviduct and the foregut of L. migratoria [].
Probab=21.26 E-value=44 Score=14.68 Aligned_cols=8 Identities=38% Similarity=0.962 Sum_probs=5.7
Q ss_pred CCCCCCCh
Q psy305 30 TPASGFQS 37 (130)
Q Consensus 30 ~~aSGfQS 37 (130)
+|+-|||.
T Consensus 1 apsmgf~g 8 (10)
T PF08262_consen 1 APSMGFHG 8 (10)
T ss_pred CCcccccc
Confidence 46778885
No 21
>PF12828 PXB: PX-associated; InterPro: IPR024555 The function of this domain is not known, but it is almost always found N-terminal to a PX domain (IPR001683 from INTERPRO).
Probab=21.21 E-value=1.1e+02 Score=22.90 Aligned_cols=42 Identities=21% Similarity=0.277 Sum_probs=33.4
Q ss_pred cCCCHHHHHHHHHhhCCCC---CCCCcchHH-HHHHHHHHHHHHHH
Q psy305 80 QEPSLLNLVEKWLERTPGL---EKDGFDFWT-KYQRGVQQMLDKRK 121 (130)
Q Consensus 80 ~~pSL~d~~~~~L~R~pgl---~~~~~nfw~-ky~~~v~~~l~~~~ 121 (130)
..|-|.-.+.+++-..||+ ......||+ |.+--++++.+.++
T Consensus 62 ~~PlLr~~f~~fvltfP~l~~~~~~~~~FWq~kvQ~f~e~f~~~~l 107 (137)
T PF12828_consen 62 SLPLLRFLFRRFVLTFPFLSNDRAAPPEFWQDKVQPFLESFASANL 107 (137)
T ss_pred ccHHHHHHHHHHHHcCCCccccccCcHHHHHHHHHHHHHHHHHcCC
Confidence 4788888888999999999 677779996 88777777665543
No 22
>PF07023 DUF1315: Protein of unknown function (DUF1315); InterPro: IPR009749 This family consists of several bacterial proteins of around 90 residues in length. The function of this family is unknown.
Probab=21.18 E-value=62 Score=23.07 Aligned_cols=18 Identities=11% Similarity=0.505 Sum_probs=15.5
Q ss_pred hhcCCCHHHHHHHHHhcC
Q psy305 13 ILETMSPLDFMQFRDYLT 30 (130)
Q Consensus 13 vletMtP~dF~~FR~~L~ 30 (130)
+++.|||.-|..++.+..
T Consensus 4 li~~mtPevY~rL~~AVE 21 (93)
T PF07023_consen 4 LIDSMTPEVYERLKQAVE 21 (93)
T ss_pred HHHhCCHHHHHHHHHHHH
Confidence 568999999999998764
No 23
>PHA00425 DNA packaging protein, small subunit
Probab=20.08 E-value=68 Score=22.59 Aligned_cols=20 Identities=30% Similarity=0.456 Sum_probs=16.9
Q ss_pred hhcCCCHHHHHHHHHhhCCC
Q psy305 78 SEQEPSLLNLVEKWLERTPG 97 (130)
Q Consensus 78 ~~~~pSL~d~~~~~L~R~pg 97 (130)
..++|-||.++.++|+|..+
T Consensus 29 ekRtPQLYnAIgKlL~RHkF 48 (88)
T PHA00425 29 EKRTPQLYNAIGKLLDRHKF 48 (88)
T ss_pred cccChHHHHHHHHHHHHhcc
Confidence 45689999999999999843
Done!