Query psy305
Match_columns 130
No_of_seqs 117 out of 378
Neff 5.1
Searched_HMMs 29240
Date Sat Aug 17 00:24:24 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy305.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/305hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2nox_A Tryptophan 2,3-dioxygen 100.0 2.3E-30 7.8E-35 211.8 10.2 92 1-100 91-182 (281)
2 2nw8_A Tryptophan 2,3-dioxygen 100.0 5.1E-29 1.7E-33 205.8 8.5 92 1-100 92-183 (306)
3 2d0t_A Indoleamine 2,3-dioxyge 99.2 1.5E-11 5.2E-16 104.4 8.1 84 2-98 208-319 (406)
4 1zee_A Hypothetical protein SO 96.2 0.051 1.8E-06 46.3 10.9 106 3-118 193-312 (403)
5 2v7k_A PRNB; IDO, TDO, biosynt 94.5 0.1 3.6E-06 43.5 7.4 84 6-91 184-281 (361)
6 3nct_A Protein PSIB; DNA bindi 50.7 6.2 0.00021 29.1 1.5 19 10-28 6-24 (144)
7 1ydi_B Alpha-actinin 4; cell a 37.4 42 0.0014 17.7 3.1 22 106-127 3-24 (26)
8 1ucp_A Pycard, ASC, apoptosis- 36.5 23 0.00078 23.3 2.5 36 12-47 10-48 (91)
9 2hm2_Q ASC2, pyrin-only protei 30.3 43 0.0015 21.8 3.0 35 12-46 10-47 (89)
10 3qf2_A Nacht, LRR and PYD doma 25.4 47 0.0016 22.7 2.6 78 12-96 10-90 (110)
11 4epz_A Transcription anti-term 20.8 34 0.0012 25.6 1.2 19 2-20 83-101 (162)
No 1
>2nox_A Tryptophan 2,3-dioxygenase; helical bundle, heme protein, oxidoreductase; HET: HEM; 2.40A {Cupriavidus metallidurans}
Probab=99.96 E-value=2.3e-30 Score=211.79 Aligned_cols=92 Identities=30% Similarity=0.449 Sum_probs=85.8
Q ss_pred ChHHHHHHHhhhhhcCCCHHHHHHHHHhcCCCCCCChHHHHHHHHHhCCCchhhhhcchhhHhhhcCChHHHHHHHhhhc
Q psy305 1 MLSVQILVDQVSILETMSPLDFMQFRDYLTPASGFQSLQFRLMENKLGLKSEHRVRYNQHYSNVFHSNSEHLVALELSEQ 80 (130)
Q Consensus 1 ~~i~~~L~~~~~vletMtP~dF~~FR~~L~~aSGfQS~q~R~iE~~lG~k~~~r~~~~~~~~~~f~~~~~~~~~l~~~~~ 80 (130)
++|+++|+++|+||+||||.||++||++||+||||||+|||+||++||+|++.+ +++|.+.|+.++++++++.
T Consensus 91 ~~i~~~L~~~~~vL~tMtp~dF~~FR~~Lg~aSGFQS~qyR~iE~~lG~k~~~~-------l~~~~~~p~~~~~l~~~~~ 163 (281)
T 2nox_A 91 SRIMDQLVQAWNVLATMTPPEYSAMRPYLGASSGFQSYQYREIEFILGNKNAAM-------LRPHAHRPEHLELVETALH 163 (281)
T ss_dssp HHHHHHHHHTHHHHTTCCHHHHHHHGGGTTTCCGGGCHHHHHHHHHTTCCCGGG-------GGGGTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHhcCCcchhhHHHHHHHHHHhCCCcHHH-------hcccccCHHHHHHHHHHhc
Confidence 379999999999999999999999999999999999999999999999999974 5567889999999999999
Q ss_pred CCCHHHHHHHHHhhCCCCCC
Q psy305 81 EPSLLNLVEKWLERTPGLEK 100 (130)
Q Consensus 81 ~pSL~d~~~~~L~R~pgl~~ 100 (130)
+|||||.+++||+|+ |++.
T Consensus 164 ~pSL~d~~~~~L~r~-G~~~ 182 (281)
T 2nox_A 164 TPSMYDEAIRLMARR-GFQI 182 (281)
T ss_dssp SCCHHHHHHHHHHHT-TCCC
T ss_pred CCCHHHHHHHHHHHc-CCCC
Confidence 999999999999998 7644
No 2
>2nw8_A Tryptophan 2,3-dioxygenase; all alpha-helical protein, structural genomics, PSI-2, prote structure initiative; HET: TRP HEM; 1.60A {Xanthomonas campestris PV} SCOP: a.266.1.1 PDB: 2nw7_A* 2nw9_A* 3bk9_A* 3e08_A* 1yw0_A
Probab=99.95 E-value=5.1e-29 Score=205.77 Aligned_cols=92 Identities=37% Similarity=0.530 Sum_probs=85.6
Q ss_pred ChHHHHHHHhhhhhcCCCHHHHHHHHHhcCCCCCCChHHHHHHHHHhCCCchhhhhcchhhHhhhcCChHHHHHHHhhhc
Q psy305 1 MLSVQILVDQVSILETMSPLDFMQFRDYLTPASGFQSLQFRLMENKLGLKSEHRVRYNQHYSNVFHSNSEHLVALELSEQ 80 (130)
Q Consensus 1 ~~i~~~L~~~~~vletMtP~dF~~FR~~L~~aSGfQS~q~R~iE~~lG~k~~~r~~~~~~~~~~f~~~~~~~~~l~~~~~ 80 (130)
++|+++|+++|+||+||||.||++||++||+||||||+|||+||++||++++.+ ++.|.+.|+.++.+.+.+.
T Consensus 92 ~ri~~~L~~~~~vL~tMtP~dF~~FR~~Lg~aSGFQS~qyR~iE~~lG~k~~~~-------l~~~~~~p~~~~~l~~~~~ 164 (306)
T 2nw8_A 92 KQVLRQLTEQWSVLETLTPSEYMGFRDVLGPSSGFQSLQYRYIEFLLGNKNPQM-------LQVFAYDPAGQARLREVLE 164 (306)
T ss_dssp HHHHHHHHHTHHHHTTCCHHHHTTTGGGSCSCCGGGCHHHHHHHHHHTCCCGGG-------GSTTTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHhCCCcccccHHHHHHHHHhCCCcHhh-------hcccccCHHHHHHHHHHhc
Confidence 379999999999999999999999999999999999999999999999999865 4557889999999999999
Q ss_pred CCCHHHHHHHHHhhCCCCCC
Q psy305 81 EPSLLNLVEKWLERTPGLEK 100 (130)
Q Consensus 81 ~pSL~d~~~~~L~R~pgl~~ 100 (130)
+|||||.+++||+|+ |++.
T Consensus 165 ~pSL~d~~~~~L~r~-G~~~ 183 (306)
T 2nw8_A 165 APSLYEEFLRYLARF-GHAI 183 (306)
T ss_dssp SCCHHHHHHHHHHHT-TCCC
T ss_pred CCCHHHHHHHHHHHc-CCCc
Confidence 999999999999998 7654
No 3
>2d0t_A Indoleamine 2,3-dioxygenase; helix bundle, riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: HEM PIM NHE; 2.30A {Homo sapiens} SCOP: a.266.1.2 PDB: 2d0u_A*
Probab=99.24 E-value=1.5e-11 Score=104.41 Aligned_cols=84 Identities=19% Similarity=0.215 Sum_probs=67.6
Q ss_pred hHHHHHHHhhhh-hcCCCHHHH-HHHHHhcCC-------------------------CCCCChHHHHHHHHHhCCCchhh
Q psy305 2 LSVQILVDQVSI-LETMSPLDF-MQFRDYLTP-------------------------ASGFQSLQFRLMENKLGLKSEHR 54 (130)
Q Consensus 2 ~i~~~L~~~~~v-letMtP~dF-~~FR~~L~~-------------------------aSGfQS~q~R~iE~~lG~k~~~r 54 (130)
.+++.|++.|+. +++|||.+| ..||+.|+. +|||||.+||.||+.||+++...
T Consensus 208 ~~l~~l~~~l~~m~e~~~P~~fy~~iRp~L~g~~~~~~~p~G~~yeGv~~~p~~~~G~Sg~QSsl~~~lD~~LGi~~~~~ 287 (406)
T 2d0t_A 208 SCLEKALQVFHQIHDHVNPKAFFSVLRIYLSGWKGNPQLSDGLVYEGFWEDPKEFAGGSAGQSSVFQCFDVLLGIQQTAG 287 (406)
T ss_dssp HHHHHHHHHHTTHHHHCCHHHHHHTHHHHTCCBSSCGGGTTCBEETTTCSSCBCBCCCCGGGCHHHHHHHHHTTCCSSCS
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHhccccccccccccCCCCCeeeeccCCcccccCCCchhhhhHHHHHHHHhCCCCccc
Confidence 577888999997 499999999 999999997 99999999999999999997641
Q ss_pred hhcchhhHhhhcCCh-HHHHHHHhhhcCCCHHHHHHHHHhhCCCC
Q psy305 55 VRYNQHYSNVFHSNS-EHLVALELSEQEPSLLNLVEKWLERTPGL 98 (130)
Q Consensus 55 ~~~~~~~~~~f~~~~-~~~~~l~~~~~~pSL~d~~~~~L~R~pgl 98 (130)
.. .| +-+++++.. .|++++.++++|++.|.+
T Consensus 288 ~~-----------~~~~fl~~mr~y--mP~~hr~fL~~l~~~~~v 319 (406)
T 2d0t_A 288 GG-----------HAAQFLQDMRRY--MPPAHRNFLCSLESNPSV 319 (406)
T ss_dssp SS-----------HHHHHHHHHGGG--SCHHHHHHHHHHHTSCCH
T ss_pred cC-----------ChHHHHHHHHhh--CCchHHHHHHHHHhcCCc
Confidence 11 01 223445444 899999999999998654
No 4
>1zee_A Hypothetical protein SO4414; all alpha-protein., structural genomics, PSI, protein struct initiative; 2.31A {Shewanella oneidensis} SCOP: a.266.1.2 PDB: 2nwb_A*
Probab=96.15 E-value=0.051 Score=46.30 Aligned_cols=106 Identities=17% Similarity=0.245 Sum_probs=76.6
Q ss_pred HHHHHHHhhhhh-cCCCHHHH-HHHHHhcC----------CCCCCChHHHHHHHHHhCCCchhhhhcchh-hHhhhcCC-
Q psy305 3 SVQILVDQVSIL-ETMSPLDF-MQFRDYLT----------PASGFQSLQFRLMENKLGLKSEHRVRYNQH-YSNVFHSN- 68 (130)
Q Consensus 3 i~~~L~~~~~vl-etMtP~dF-~~FR~~L~----------~aSGfQS~q~R~iE~~lG~k~~~r~~~~~~-~~~~f~~~- 68 (130)
.++.+++++.-| +.++|..| ..+|+++. .+||=||.-+..|...||++...--.| .. +.+.+.+.
T Consensus 193 aL~~i~~~l~rm~e~~dP~vFy~~iRPfl~G~~eG~~~y~G~SaaQSSlIq~lD~lLGI~h~~~~~~-~~fL~emr~YMP 271 (403)
T 1zee_A 193 ALQDVIESNQQLFNRLDTDRFFYCVRPYYKPYRVGSVVYRGANAGDFAGINVIDLTLGLCFANEASY-SQMLVDKFLYMM 271 (403)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHHHTGGGGCCEEETTEEECCCCTTCSHHHHHHHHHTTSSCTTSHHH-HHHHHTTGGGSC
T ss_pred HHHHHHHHHHHHHhhcCHHHHHHhccccccccccCceeecCCchhhhhhHHHHHHHhCCCCCCCchH-HHHHHHHHhcCC
Confidence 456677777777 89999999 89999854 579999999999999999997642111 12 34555556
Q ss_pred hHHHHHHHhhhcCCCHHHHHHHHHhhCCCCCCCCcchHHHHHHHHHHHHH
Q psy305 69 SEHLVALELSEQEPSLLNLVEKWLERTPGLEKDGFDFWTKYQRGVQQMLD 118 (130)
Q Consensus 69 ~~~~~~l~~~~~~pSL~d~~~~~L~R~pgl~~~~~nfw~ky~~~v~~~l~ 118 (130)
|+.++-|+...+.|||.+.++. .. ....-.-|.++|..+..
T Consensus 272 p~HR~FL~~l~~~~slr~~vl~--~~-------~~~l~~aY~~~v~~L~~ 312 (403)
T 1zee_A 272 PEDQQILRECMRRPNLMDDFLQ--AK-------GCIHQDWYQENLKLFIE 312 (403)
T ss_dssp HHHHHHHHHHTTSCCHHHHHHH--TG-------GGGGSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCcHHHHHHh--cC-------CHHHHHHHHHHHHHHHH
Confidence 4566778888889999999974 21 12344557777766554
No 5
>2v7k_A PRNB; IDO, TDO, biosynthetic protein; HET: HEM DTR; 1.70A {Pseudomonas fluorescens} PDB: 2v7j_A* 2v7i_A* 2v7l_A* 2v7m_A* 2x66_A* 2x67_A* 2x68_A*
Probab=94.53 E-value=0.1 Score=43.53 Aligned_cols=84 Identities=14% Similarity=0.138 Sum_probs=60.3
Q ss_pred HHHHhhhhh-cCCCHHHH-HHHHHh----------cCCCCCCChHHHHHHHHHhCCCchhhhhcchh-hHhhhcCChH-H
Q psy305 6 ILVDQVSIL-ETMSPLDF-MQFRDY----------LTPASGFQSLQFRLMENKLGLKSEHRVRYNQH-YSNVFHSNSE-H 71 (130)
Q Consensus 6 ~L~~~~~vl-etMtP~dF-~~FR~~----------L~~aSGfQS~q~R~iE~~lG~k~~~r~~~~~~-~~~~f~~~~~-~ 71 (130)
-+...+.-| +..+|..| ..||++ +..+||=||.-+. |...||+++..--.| .. +.+...+.|. .
T Consensus 184 ~l~~~l~rm~e~~dP~vFy~~iRpfYeGv~~~~~~y~G~SaaQssli~-lD~~LGi~h~~~~~~-~~fL~emr~YMP~~H 261 (361)
T 2v7k_A 184 KMVESIVYAYRFISPQVFYDELRPFYEPIRVGGQSYLGPGAVEMPLFV-LEHVLWGSQSDDQTY-REFKETYLPYVLPAY 261 (361)
T ss_dssp HHHHHHHHHHHHSCHHHHHHHTGGGGCCEEETTEEECCCCGGGSTHHH-HHHHHTTTTCCCHHH-HHHHHHHGGGSCHHH
T ss_pred HHHHHHHHHHhhcCHHHHHHhccCcCCCccCCcceecCCchhhchHHH-HHHHhCCCCCCCchH-HHHHHHHHhcCCHHH
Confidence 344445555 67789999 999994 4578999999999 999999997532111 12 3444555644 5
Q ss_pred HHHHHhhhcCCCHHHHHHHH
Q psy305 72 LVALELSEQEPSLLNLVEKW 91 (130)
Q Consensus 72 ~~~l~~~~~~pSL~d~~~~~ 91 (130)
++-|+...+.||+.+.++.-
T Consensus 262 R~FL~~l~~~~sir~~v~~~ 281 (361)
T 2v7k_A 262 RAVYARFSGEPALIDRALDE 281 (361)
T ss_dssp HHHHHHHHTSCCHHHHHHHH
T ss_pred HHHHHHHHhcCcHHHHHHhh
Confidence 57778888889999999863
No 6
>3nct_A Protein PSIB; DNA binding protein, chaperone; 2.20A {Escherichia coli}
Probab=50.66 E-value=6.2 Score=29.12 Aligned_cols=19 Identities=21% Similarity=0.489 Sum_probs=16.6
Q ss_pred hhhhhcCCCHHHHHHHHHh
Q psy305 10 QVSILETMSPLDFMQFRDY 28 (130)
Q Consensus 10 ~~~vletMtP~dF~~FR~~ 28 (130)
.+++|.||++.+|-++|+.
T Consensus 6 tL~vL~tMsa~ElEd~R~~ 24 (144)
T 3nct_A 6 TLNVLQTMNAQEYEDIRAA 24 (144)
T ss_dssp -CHHHHHCCHHHHHHHHHH
T ss_pred cHHHHhccCHHHHHHHHHH
Confidence 5789999999999999985
No 7
>1ydi_B Alpha-actinin 4; cell adhesion, structural protein; 1.80A {Homo sapiens}
Probab=37.36 E-value=42 Score=17.72 Aligned_cols=22 Identities=14% Similarity=0.489 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhhc
Q psy305 106 WTKYQRGVQQMLDKRKDSALVR 127 (130)
Q Consensus 106 w~ky~~~v~~~l~~~~~~~~~~ 127 (130)
|+++...+.++.++-+.+|.+.
T Consensus 3 WeqL~t~~~r~~neiEnqIlaR 24 (26)
T 1ydi_B 3 WEQLLTTIARTINEVENQILTR 24 (26)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHc
Confidence 9999999999999988887654
No 8
>1ucp_A Pycard, ASC, apoptosis-associated speck-like protein containing A CARD; death domain fold; NMR {Homo sapiens} SCOP: a.77.1.5
Probab=36.48 E-value=23 Score=23.33 Aligned_cols=36 Identities=14% Similarity=0.229 Sum_probs=30.6
Q ss_pred hhhcCCCHHHHHHHHHhcCCC---CCCChHHHHHHHHHh
Q psy305 12 SILETMSPLDFMQFRDYLTPA---SGFQSLQFRLMENKL 47 (130)
Q Consensus 12 ~vletMtP~dF~~FR~~L~~a---SGfQS~q~R~iE~~l 47 (130)
..|+-|++.+|.+|...|... .|+++.-.-.+|..-
T Consensus 10 ~~Le~L~~~Elk~FK~~L~~~~l~~g~~~Ip~~~le~a~ 48 (91)
T 1ucp_A 10 DALENLTAEELKKFKLKLLSVPLREGYGRIPRGALLSMD 48 (91)
T ss_dssp HHHHHSCHHHHHHHHHHTTTSCCCSSSCCCCHHHHHHCC
T ss_pred HHHHHcCHHHHHHHHHHHhhccccccCCCCChhhcccCC
Confidence 567999999999999999765 489999999888763
No 9
>2hm2_Q ASC2, pyrin-only protein 1, PAAD-only; pyrin domain, six helix bundle, apoptosis; NMR {Homo sapiens}
Probab=30.33 E-value=43 Score=21.81 Aligned_cols=35 Identities=20% Similarity=0.441 Sum_probs=27.3
Q ss_pred hhhcCCCHHHHHHHHHhcCCCC---CCChHHHHHHHHH
Q psy305 12 SILETMSPLDFMQFRDYLTPAS---GFQSLQFRLMENK 46 (130)
Q Consensus 12 ~vletMtP~dF~~FR~~L~~aS---GfQS~q~R~iE~~ 46 (130)
..|+-|++.+|.+|...|...+ |+++.-.-.+|..
T Consensus 10 ~~Le~L~~~Elk~FK~~L~~~~~~~~~~~Ip~~~le~a 47 (89)
T 2hm2_Q 10 KVLENLTPEELKKFKMKLGTVPLREGFERIPRGALGQL 47 (89)
T ss_dssp HHHTTSCHHHHHHHHHHTTTSCCCTTCCCCCGGGTTTS
T ss_pred HHHHHcCHHHHHHHHHHHccccccccCCCCChhhcccC
Confidence 5689999999999999998643 7777766666543
No 10
>3qf2_A Nacht, LRR and PYD domains-containing protein 3; six helix bundle, apoptosis; 1.70A {Homo sapiens}
Probab=25.36 E-value=47 Score=22.74 Aligned_cols=78 Identities=15% Similarity=0.067 Sum_probs=48.5
Q ss_pred hhhcCCCHHHHHHHHHhcCCC---CCCChHHHHHHHHHhCCCchhhhhcchhhHhhhcCChHHHHHHHhhhcCCCHHHHH
Q psy305 12 SILETMSPLDFMQFRDYLTPA---SGFQSLQFRLMENKLGLKSEHRVRYNQHYSNVFHSNSEHLVALELSEQEPSLLNLV 88 (130)
Q Consensus 12 ~vletMtP~dF~~FR~~L~~a---SGfQS~q~R~iE~~lG~k~~~r~~~~~~~~~~f~~~~~~~~~l~~~~~~pSL~d~~ 88 (130)
..|+-|+..+|.+|+..|.+. .|+++.-.-.+|..-+..-. .-+...|.. ..+-......+..-.+.|..
T Consensus 10 ~~LeeL~~eElkkFK~~L~~~~~~~g~~~Ip~~~le~ad~~dLA------~lLv~~y~~-~~A~~vt~~if~~mn~~dL~ 82 (110)
T 3qf2_A 10 RYLEDLEDVDLKKFKMHLEDYPPQKGCIPLPRGQTEKADHVDLA------TLMIDFNGE-EKAWAMAVWIFAAINRRDLY 82 (110)
T ss_dssp HHHHTCCHHHHHHHHHHHHTCCSSSSCCCCCHHHHHHCCHHHHH------HHHHHHHCH-HHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHcCHHHHHHHHHHHcccccccCCCCCCHHHHhcCCHHHHH------HHHHHHcCH-HHHHHHHHHHHHHcCHHHHH
Confidence 458999999999999999542 38888878888765333222 124555521 12233344555666777777
Q ss_pred HHHHhhCC
Q psy305 89 EKWLERTP 96 (130)
Q Consensus 89 ~~~L~R~p 96 (130)
++.-.+-|
T Consensus 83 e~l~~~e~ 90 (110)
T 3qf2_A 83 EKAKRDEP 90 (110)
T ss_dssp HHHHHTCC
T ss_pred HHHHHHHH
Confidence 66655543
No 11
>4epz_A Transcription anti-terminator antagonist UPXZ; transcription regulation, antagonist of transcription anti- termination; HET: MSE; 1.68A {Bacteroides uniformis atcc 8492}
Probab=20.84 E-value=34 Score=25.60 Aligned_cols=19 Identities=16% Similarity=0.109 Sum_probs=16.8
Q ss_pred hHHHHHHHhhhhhcCCCHH
Q psy305 2 LSVQILVDQVSILETMSPL 20 (130)
Q Consensus 2 ~i~~~L~~~~~vletMtP~ 20 (130)
.|+.+|..+|+||+.++|.
T Consensus 83 ~~Q~vLdRs~~vL~~Lp~S 101 (162)
T 4epz_A 83 KKQVILDRIYNIMSQLPAS 101 (162)
T ss_dssp HHHHHHHHHHTTGGGSCSS
T ss_pred HHHHHHHHHHHHHHhCChH
Confidence 5899999999999999864
Done!