Query psy305
Match_columns 130
No_of_seqs 117 out of 378
Neff 5.1
Searched_HMMs 13730
Date Sat Aug 17 00:24:36 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy305.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/305hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2nw8a1 a.266.1.1 (A:23-284) T 99.9 1.2E-25 9E-30 176.8 8.5 90 2-98 71-160 (262)
2 d1zeea1 a.266.1.2 (A:6-392) Hy 94.8 0.074 5.4E-06 43.0 9.2 107 4-119 189-308 (387)
3 d2d0ta1 a.266.1.2 (A:12-403) I 79.5 4.1 0.0003 32.0 8.4 75 14-88 207-309 (392)
4 d1ucpa_ a.77.1.5 (A:) Apoptosi 52.9 4.5 0.00033 25.4 2.7 36 11-46 9-47 (91)
5 d2ckca1 d.76.2.1 (A:2563-2622) 37.0 6.4 0.00046 23.4 1.3 25 76-101 18-42 (60)
6 d1af7a1 a.58.1.1 (A:11-91) Che 31.9 4.8 0.00035 24.1 0.1 20 16-35 11-30 (81)
7 d2ckaa1 d.76.2.1 (A:2028-2085) 28.4 11 0.00078 22.2 1.3 25 76-101 20-44 (58)
8 d1lrza2 d.108.1.4 (A:1-165) Me 22.0 35 0.0025 22.9 3.3 34 15-48 4-37 (165)
9 d1q2la2 d.185.1.1 (A:733-960) 21.1 35 0.0026 23.6 3.2 28 2-29 99-126 (228)
10 d1ttya_ a.4.13.2 (A:) Sigma70 17.9 75 0.0054 19.3 3.9 40 12-52 14-53 (87)
No 1
>d2nw8a1 a.266.1.1 (A:23-284) Tryptophan 2,3-dioxygenase {Xanthomonas campestris pv. campestris [TaxId: 340]}
Probab=99.92 E-value=1.2e-25 Score=176.79 Aligned_cols=90 Identities=37% Similarity=0.522 Sum_probs=82.5
Q ss_pred hHHHHHHHhhhhhcCCCHHHHHHHHHhcCCCCCCChHHHHHHHHHhCCCchhhhhcchhhHhhhcCChHHHHHHHhhhcC
Q psy305 2 LSVQILVDQVSILETMSPLDFMQFRDYLTPASGFQSLQFRLMENKLGLKSEHRVRYNQHYSNVFHSNSEHLVALELSEQE 81 (130)
Q Consensus 2 ~i~~~L~~~~~vletMtP~dF~~FR~~L~~aSGfQS~q~R~iE~~lG~k~~~r~~~~~~~~~~f~~~~~~~~~l~~~~~~ 81 (130)
+|+++|+.+|+||+||||.||++||++|+|||||||+|||+||++||++++.+ ...+...+.+.+.+...+..
T Consensus 71 ~~~~~l~~~~~vletMtp~~F~~FR~~L~~aSGfQS~q~R~iE~~~g~~~~~~-------~~~~~~~~~~~~~~~~~~~~ 143 (262)
T d2nw8a1 71 QVLRQLTEQWSVLETLTPSEYMGFRDVLGPSSGFQSLQYRYIEFLLGNKNPQM-------LQVFAYDPAGQARLREVLEA 143 (262)
T ss_dssp HHHHHHHHTHHHHTTCCHHHHTTTGGGSCSCCGGGCHHHHHHHHHHTCCCGGG-------GSTTTTCHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHhccCccccchhhchhHhhcCCcchHH-------HHhhcchhhHHHHHHHHhhc
Confidence 68999999999999999999999999999999999999999999999998864 45566678888999999999
Q ss_pred CCHHHHHHHHHhhCCCC
Q psy305 82 PSLLNLVEKWLERTPGL 98 (130)
Q Consensus 82 pSL~d~~~~~L~R~pgl 98 (130)
|||++.+.+|+++.+..
T Consensus 144 ~sl~~~~~~~l~~~~~~ 160 (262)
T d2nw8a1 144 PSLYEEFLRYLARFGHA 160 (262)
T ss_dssp CCHHHHHHHHHHHTTCC
T ss_pred ccHHHHHHHHHhccCCc
Confidence 99999999999998543
No 2
>d1zeea1 a.266.1.2 (A:6-392) Hypothetical protein SO4414 {Shewanella oneidensis [TaxId: 70863]}
Probab=94.85 E-value=0.074 Score=43.03 Aligned_cols=107 Identities=18% Similarity=0.213 Sum_probs=75.4
Q ss_pred HHHHHHhhhhh-cCCCHHHH-HHHHHhcCC----------CCCCChHHHHHHHHHhCCCchhhhhcchhhHhhhcCC-hH
Q psy305 4 VQILVDQVSIL-ETMSPLDF-MQFRDYLTP----------ASGFQSLQFRLMENKLGLKSEHRVRYNQHYSNVFHSN-SE 70 (130)
Q Consensus 4 ~~~L~~~~~vl-etMtP~dF-~~FR~~L~~----------aSGfQS~q~R~iE~~lG~k~~~r~~~~~~~~~~f~~~-~~ 70 (130)
++-++++...| +.++|..| ...|+++.| +|+=||..+-.|+.+||+++.+--.|.+=..+.+... |+
T Consensus 189 Lq~v~~sn~~l~~~ld~~~Ff~~vRPyykP~rVG~q~YrG~sAgqsa~I~vlD~LLGvcha~dP~ysqfL~dmr~YMPP~ 268 (387)
T d1zeea1 189 LQDVIESNQQLFNRLDTDRFFYCVRPYYKPYRVGSVVYRGANAGDFAGINVIDLTLGLCFANEASYSQMLVDKFLYMMPE 268 (387)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHTGGGGCCEEETTEEECCCCTTCSHHHHHHHHHTTSSCTTSHHHHHHHHTTGGGSCHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHhhhhcchhhcCCeeeCCCChhhcccHHHHHHHHccccCCCccHHHHHHHHHhhCCHH
Confidence 44566677777 99999986 578888754 8999999999999999999853212211144555665 67
Q ss_pred HHHHHHhhhcCCCHHHHHHHHHhhCCCCCCCCcchHHHHHHHHHHHHHH
Q psy305 71 HLVALELSEQEPSLLNLVEKWLERTPGLEKDGFDFWTKYQRGVQQMLDK 119 (130)
Q Consensus 71 ~~~~l~~~~~~pSL~d~~~~~L~R~pgl~~~~~nfw~ky~~~v~~~l~~ 119 (130)
..+-|+...+.|||.|.++.--. . ..- .-|+++|...++-
T Consensus 269 hra~L~d~~r~PSl~d~vLsa~~-~-----~~~---~~y~~nL~aflev 308 (387)
T d1zeea1 269 DQQILRECMRRPNLMDDFLQAKG-C-----IHQ---DWYQENLKLFIEV 308 (387)
T ss_dssp HHHHHHHHTTSCCHHHHHHHTGG-G-----GGS---HHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCChhHHHHHhccc-c-----cch---HHHHHHHHHHHHH
Confidence 77899999999999999975211 1 112 2377777666553
No 3
>d2d0ta1 a.266.1.2 (A:12-403) Indoleamine 2,3-dioxygenase {Human (Homo sapiens) [TaxId: 9606]}
Probab=79.55 E-value=4.1 Score=31.97 Aligned_cols=75 Identities=23% Similarity=0.267 Sum_probs=49.6
Q ss_pred hcCCCHHHHHH-HHHhc-------------------------CCCCCCChHHHHHHHHHhCCCchhhhhcchhhHhhh-c
Q psy305 14 LETMSPLDFMQ-FRDYL-------------------------TPASGFQSLQFRLMENKLGLKSEHRVRYNQHYSNVF-H 66 (130)
Q Consensus 14 letMtP~dF~~-FR~~L-------------------------~~aSGfQS~q~R~iE~~lG~k~~~r~~~~~~~~~~f-~ 66 (130)
.+..+|..|.. ||.++ ...||=||.=+..+...||+++.....--..|+.-+ .
T Consensus 207 ~e~~~p~~fy~~~R~fi~G~k~~~~~p~GviYeg~~~~p~~~~G~SgaQSsii~~lD~~LGv~h~~~~~~l~~~L~~mR~ 286 (392)
T d2d0ta1 207 HDHVNPKAFFSVLRIYLSGWKGNPQLSDGLVYEGFWEDPKEFAGGSAGQSSVFQCFDVLLGIQQTAGGGHAAQFLQDMRR 286 (392)
T ss_dssp HHHCCHHHHHHTHHHHTCCBSSCGGGTTCBEETTTCSSCBCBCCCCGGGCHHHHHHHHHTTCCSSCSSSHHHHHHHHHGG
T ss_pred hccCChhhhccceeeeeeeecCCCcCCCCceeccCCCCccccCCCCccccchHHHHHHHhCCcccCCCchHHHHHHHHHH
Confidence 37778998765 99994 467999999999999999997742110001233333 3
Q ss_pred CChH-HHHHHHhhhcCCCHHHHH
Q psy305 67 SNSE-HLVALELSEQEPSLLNLV 88 (130)
Q Consensus 67 ~~~~-~~~~l~~~~~~pSL~d~~ 88 (130)
+.|. .++-|+...+.+++.+.+
T Consensus 287 YmP~~HR~Fl~~l~~~~~ir~~v 309 (392)
T d2d0ta1 287 YMPPAHRNFLCSLESNPSVREFV 309 (392)
T ss_dssp GSCHHHHHHHHHHHTSCCHHHHH
T ss_pred hCcHHHHHHHHHHHhccchHHHH
Confidence 3444 346666777777777766
No 4
>d1ucpa_ a.77.1.5 (A:) Apoptosis-associated speck-like protein Asc {Human (Homo sapiens) [TaxId: 9606]}
Probab=52.92 E-value=4.5 Score=25.42 Aligned_cols=36 Identities=14% Similarity=0.285 Sum_probs=30.8
Q ss_pred hhhhcCCCHHHHHHHHHhcCCCC---CCChHHHHHHHHH
Q psy305 11 VSILETMSPLDFMQFRDYLTPAS---GFQSLQFRLMENK 46 (130)
Q Consensus 11 ~~vletMtP~dF~~FR~~L~~aS---GfQS~q~R~iE~~ 46 (130)
...|+-|++.+|.+|+..|...+ |+.+.-.-.+|..
T Consensus 9 l~~Le~L~~~ElkkFK~~L~~~~l~~~~~~Ip~~~le~a 47 (91)
T d1ucpa_ 9 LDALENLTAEELKKFKLKLLSVPLREGYGRIPRGALLSM 47 (91)
T ss_dssp HHHHHHSCHHHHHHHHHHTTTSCCCSSSCCCCHHHHHHC
T ss_pred HHHHHHccHHHHHHHHHHHCcccccccCCCCCHHHHhhC
Confidence 35689999999999999998754 9999888888875
No 5
>d2ckca1 d.76.2.1 (A:2563-2622) Chromodomain-helicase-DNA-binding protein 7, CHD7 {Human (Homo sapiens) [TaxId: 9606]}
Probab=37.03 E-value=6.4 Score=23.44 Aligned_cols=25 Identities=32% Similarity=0.582 Sum_probs=20.2
Q ss_pred HhhhcCCCHHHHHHHHHhhCCCCCCC
Q psy305 76 ELSEQEPSLLNLVEKWLERTPGLEKD 101 (130)
Q Consensus 76 ~~~~~~pSL~d~~~~~L~R~pgl~~~ 101 (130)
-++...|++-++- .||...|+++.+
T Consensus 18 L~G~~AP~~~~L~-~WL~~hP~y~Vd 42 (60)
T d2ckca1 18 LVGEDAPKNKDLV-EWLKLHPTYTVD 42 (60)
T ss_dssp ECTTSSCBHHHHH-HHHHHCTTEEES
T ss_pred ecCcCCcCHHHHH-HHHHHCCCcEee
Confidence 3577889988776 999999999654
No 6
>d1af7a1 a.58.1.1 (A:11-91) Chemotaxis receptor methyltransferase CheR, N-terminal domain {Salmonella typhimurium [TaxId: 90371]}
Probab=31.89 E-value=4.8 Score=24.14 Aligned_cols=20 Identities=15% Similarity=0.325 Sum_probs=14.5
Q ss_pred CCCHHHHHHHHHhcCCCCCC
Q psy305 16 TMSPLDFMQFRDYLTPASGF 35 (130)
Q Consensus 16 tMtP~dF~~FR~~L~~aSGf 35 (130)
.||+.+|..|++.+...+|+
T Consensus 11 ~lsd~~f~~~~~~i~~~~Gi 30 (81)
T d1af7a1 11 ALSDAHFRRICQLIYQRAGI 30 (81)
T ss_dssp CCCHHHHHHHHHHHHHHHCC
T ss_pred CCCHHHHHHHHHHHHHHhCC
Confidence 69999999998655444443
No 7
>d2ckaa1 d.76.2.1 (A:2028-2085) Chromodomain-helicase-dna-binding protein 8, CHD8 {Human (Homo sapiens) [TaxId: 9606]}
Probab=28.43 E-value=11 Score=22.25 Aligned_cols=25 Identities=28% Similarity=0.533 Sum_probs=20.0
Q ss_pred HhhhcCCCHHHHHHHHHhhCCCCCCC
Q psy305 76 ELSEQEPSLLNLVEKWLERTPGLEKD 101 (130)
Q Consensus 76 ~~~~~~pSL~d~~~~~L~R~pgl~~~ 101 (130)
-++...|++-++. +||...|+++..
T Consensus 20 L~G~~AP~~~~L~-~WL~~nP~y~V~ 44 (58)
T d2ckaa1 20 LVGEDAPRRAELE-MWLQGHPEFAVD 44 (58)
T ss_dssp ECTTSSCBHHHHH-HHHHHCTTEEEC
T ss_pred ccccCCcCHHHHH-HHHHHCCCCEEC
Confidence 3567788888776 999999998655
No 8
>d1lrza2 d.108.1.4 (A:1-165) Methicillin resistance protein FemA {Staphylococcus aureus [TaxId: 1280]}
Probab=22.01 E-value=35 Score=22.89 Aligned_cols=34 Identities=15% Similarity=0.164 Sum_probs=29.6
Q ss_pred cCCCHHHHHHHHHhcCCCCCCChHHHHHHHHHhC
Q psy305 15 ETMSPLDFMQFRDYLTPASGFQSLQFRLMENKLG 48 (130)
Q Consensus 15 etMtP~dF~~FR~~L~~aSGfQS~q~R~iE~~lG 48 (130)
.++|+.+|.+|-..--.+|=+||..|-.+-..-|
T Consensus 4 ~~it~~e~d~f~~~~~~~~~lQs~~w~~~k~~~g 37 (165)
T d1lrza2 4 TNLTAKEFGAFTDSMPYSHFTQTVGHYELKLAEG 37 (165)
T ss_dssp EECCHHHHHHHHHTSTTCCTTSSHHHHHHHHHTT
T ss_pred eeCCHHHHHHHHHhCCCCCcccCHHHHHHHhhCC
Confidence 5899999999998888899999999998876543
No 9
>d1q2la2 d.185.1.1 (A:733-960) Protease III {Escherichia coli [TaxId: 562]}
Probab=21.13 E-value=35 Score=23.57 Aligned_cols=28 Identities=18% Similarity=0.237 Sum_probs=22.4
Q ss_pred hHHHHHHHhhhhhcCCCHHHHHHHHHhc
Q psy305 2 LSVQILVDQVSILETMSPLDFMQFRDYL 29 (130)
Q Consensus 2 ~i~~~L~~~~~vletMtP~dF~~FR~~L 29 (130)
+|...|..-...|+.||+.+|...+..|
T Consensus 99 ~I~~fl~~~~~~l~~~~~eef~~~K~~l 126 (228)
T d1q2la2 99 RYKAFFPTAEAKLRAMKPDEFAQIQQAV 126 (228)
T ss_dssp HHHHHHHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcccHHHHHHHHHHH
Confidence 4566666666788999999999999865
No 10
>d1ttya_ a.4.13.2 (A:) Sigma70 (SigA, RpoD) {Thermotoga maritima [TaxId: 2336]}
Probab=17.87 E-value=75 Score=19.28 Aligned_cols=40 Identities=18% Similarity=0.198 Sum_probs=33.2
Q ss_pred hhhcCCCHHHHHHHHHhcCCCCCCChHHHHHHHHHhCCCch
Q psy305 12 SILETMSPLDFMQFRDYLTPASGFQSLQFRLMENKLGLKSE 52 (130)
Q Consensus 12 ~vletMtP~dF~~FR~~L~~aSGfQS~q~R~iE~~lG~k~~ 52 (130)
.+|++++|.+-.-++...|=.. .+...+..|=..+|+..+
T Consensus 14 ~~l~~L~~rE~~Ii~~rfGl~~-~~~~tl~eI~~~lgiSrE 53 (87)
T d1ttya_ 14 KVLKTLSPREAMVLRMRYGLLD-GKPKTLEEVGQYFNVTRE 53 (87)
T ss_dssp HHHTTSCHHHHHHHHHHHTTTT-SSCCCHHHHHHHHTCCHH
T ss_pred HHHhcCCHHHHHHHHHHcCCCC-CCcCCHHHHHHHhCCCHH
Confidence 5679999999999999987643 367788999999999765
Done!