RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy305
(130 letters)
>gnl|CDD|112130 pfam03301, Trp_dioxygenase, Tryptophan 2,3-dioxygenase.
Length = 346
Score = 143 bits (363), Expect = 5e-43
Identities = 64/113 (56%), Positives = 83/113 (73%), Gaps = 2/113 (1%)
Query: 5 QILVDQVSILETMSPLDFMQFRDYLTPASGFQSLQFRLMENKLGLKSEHRVRYNQHYSNV 64
++L Q ++LETM+PLDF FR YL PASGFQSLQFRL+ENKLG+KS RV+YN+ Y V
Sbjct: 97 ELLTAQWTVLETMTPLDFNDFRSYLGPASGFQSLQFRLLENKLGVKSSSRVKYNRKYRTV 156
Query: 65 FHSNSEHLVALELSEQEPSLLNLVEKWLERTPGLEKDGFDFWTKYQRGVQQML 117
F ++ L + E+E SLL+LV WLERTPGLE GF+FW K+++ V +L
Sbjct: 157 F--EGDYNELLLVPEEEASLLHLVLAWLERTPGLEPHGFNFWGKFEKSVYDLL 207
>gnl|CDD|188272 TIGR03036, trp_2_3_diox, tryptophan 2,3-dioxygenase. Members of
this family are tryptophan 2,3-dioxygenase, as confirmed
by several experimental characterizations, and by
conserved operon structure for many of the other
members. This enzyme represents the first of a two-step
degradation to L-kynurenine, and a three-step pathway
(via kynurenine) to anthranilate plus alanine [Energy
metabolism, Amino acids and amines].
Length = 264
Score = 63.1 bits (154), Expect = 6e-13
Identities = 30/88 (34%), Positives = 43/88 (48%), Gaps = 7/88 (7%)
Query: 7 LVDQVSILETMSPLDFMQFRDYLTPASGFQSLQFRLMENKLGLKSEHRVRYNQHYSNVFH 66
L +L TM+P ++ FRD L +SGFQS Q+R +E LG K+ +R
Sbjct: 80 LNQAWDVLATMTPAEYSAFRDALGQSSGFQSYQYREIEFLLGNKNAAMLR-------PHE 132
Query: 67 SNSEHLVALELSEQEPSLLNLVEKWLER 94
+ E LE + PSL + V + L R
Sbjct: 133 HDPELHAELEAALHAPSLYDEVLRLLAR 160
>gnl|CDD|226014 COG3483, TDO2, Tryptophan 2,3-dioxygenase (vermilion) [Amino acid
transport and metabolism].
Length = 262
Score = 61.7 bits (150), Expect = 2e-12
Identities = 29/82 (35%), Positives = 47/82 (57%), Gaps = 7/82 (8%)
Query: 13 ILETMSPLDFMQFRDYLTPASGFQSLQFRLMENKLGLKSEHRVRYNQHYSNVFHSNSEHL 72
+L TM+P D++ FRD L +SGFQS Q+R +E LG K+ ++ ++H +E L
Sbjct: 84 VLATMTPADYLDFRDALGQSSGFQSYQYREIEFLLGNKNAALLKPHKH-------RAELL 136
Query: 73 VALELSEQEPSLLNLVEKWLER 94
L+ + + PSL + + L R
Sbjct: 137 ARLKAALETPSLYDEAIRLLAR 158
>gnl|CDD|212091 cd11522, SLC6sbd_SBAT1, Sodium-coupled branched-chain amino-acid
transporter 1; solute-binding domain. SBAT1 (also
called B0AT2, v7-3, NTT7-3) is a high-affinity
Na(+)-dependent transporter for large neutral amino
acids, including leucine, isoleucine, valine, proline
and methionine. Human SBAT1 is encoded by the SLC6A15
gene, a susceptibility gene for major depression. SBAT1
is expressed in brain, and may have a role in
transporting neurotransmitter precursors into neurons.
This subgroup belongs to the solute carrier 6 (SLC6)
transporter family.
Length = 580
Score = 27.6 bits (61), Expect = 2.4
Identities = 16/34 (47%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
Query: 20 LDFMQFRDYLT--PASGFQSLQFRLMENKLGLKS 51
L F+ F + +T PAS F S+ F LM LGL S
Sbjct: 381 LAFIAFTEAMTHFPASPFWSVMFFLMLVNLGLGS 414
>gnl|CDD|212084 cd11515, SLC6sbd_NTT4-like, Na(+)-dependent neurotransmitter
transporter 4, and related proteins; solute-binding
domain. This subgroup includes the solute-binding
domain of NTT4 (also called XT1) and SBAT1 (also called
B0AT2, v7-3, NTT7-3); both these proteins can transport
neutral amino acids. Human SBAT1 is encoded by the
SLC6A15 gene, a susceptibility gene for major
depression. SBAT1 is expressed in brain, and may have a
role in transporting neurotransmitter precursors into
neurons. Human NTT4 is encoded by the SLC6A17 gene. NTT4
is specifically expressed in the nervous system, in
synaptic vesicles of glutamatergic and GABAergic
neurons, and may play an important role in synaptic
transmission. This subgroup belongs to the solute
carrier 6 (SLC6) transporter family.
Length = 530
Score = 27.2 bits (60), Expect = 2.6
Identities = 16/34 (47%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
Query: 20 LDFMQFRDYLT--PASGFQSLQFRLMENKLGLKS 51
L F+ F + +T PAS F S+ F LM LGL S
Sbjct: 331 LAFIAFTEAMTHFPASPFWSVMFFLMLVNLGLGS 364
>gnl|CDD|226118 COG3590, PepO, Predicted metalloendopeptidase [Posttranslational
modification, protein turnover, chaperones].
Length = 654
Score = 27.0 bits (60), Expect = 3.4
Identities = 10/39 (25%), Positives = 17/39 (43%), Gaps = 2/39 (5%)
Query: 83 SLLNLVEKWLERTPGLEKDGFDFWTKYQRGVQQMLDKRK 121
L+ +L T L + FDF+ + G + D+ K
Sbjct: 290 KLIRAAAPYL--TEDLVDEHFDFYGRTLSGQPEARDRWK 326
>gnl|CDD|214402 MTH00023, COX2, cytochrome c oxidase subunit II; Validated.
Length = 240
Score = 26.6 bits (59), Expect = 3.9
Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Query: 23 MQFRDYLTPASGFQSLQFRLME--NKLGLKSEHRVRYNQHYSNVFHS 67
++F Y+ P S S FRL+E N+L + VR ++V HS
Sbjct: 127 LEFDSYMVPTSDLNSGDFRLLEVDNRLVVPINTHVRILVTGADVLHS 173
>gnl|CDD|212090 cd11521, SLC6sbd_NTT4, Na(+)-dependent neurotransmitter transporter
4; solute-binding domain. NTT4 (also called XT1)
transports the neutral amino acids, proline, glycine,
leucine, and alanine, and may play an important role in
synaptic transmission. Human NTT4 is encoded by the
SLC6A17 gene. NTT4 is specifically expressed in the
nervous system, in synaptic vesicles of glutamatergic
and GABAergic neurons. This subgroup belongs to the
solute carrier 6 (SLC6) transporter family.
Length = 589
Score = 26.8 bits (59), Expect = 4.2
Identities = 16/34 (47%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
Query: 20 LDFMQFRDYLT--PASGFQSLQFRLMENKLGLKS 51
L F+ F + +T PAS F S+ F LM LGL S
Sbjct: 381 LAFIAFTEAMTHFPASPFWSVMFFLMLINLGLGS 414
>gnl|CDD|225487 COG2936, COG2936, Predicted acyl esterases [General function
prediction only].
Length = 563
Score = 25.9 bits (57), Expect = 7.5
Identities = 14/37 (37%), Positives = 15/37 (40%), Gaps = 8/37 (21%)
Query: 75 LELSEQEPSLLNLVEKWLERTPGLEKDGFDFWTKYQR 111
EL E EP L E WLE DFW + R
Sbjct: 216 TELLEGEPYFL---ELWLEHPLR-----DDFWRRGDR 244
>gnl|CDD|222257 pfam13603, tRNA-synt_1_2, Leucyl-tRNA synthetase, Domain 2. This
is a family of the conserved region of Leucine-tRNA
ligase or Leucyl-tRNA synthetase, EC:6.1.1.4.
Length = 178
Score = 25.5 bits (57), Expect = 7.8
Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 6/41 (14%)
Query: 70 EHLVALELSEQEPSLLNLVEKW-----LERT-PGLEKDGFD 104
EH +A +L+E+ P L +E+ +ERT EK+G
Sbjct: 37 EHPLAKKLAEKNPELAAFIEECKKTSTIERTIATAEKEGIF 77
>gnl|CDD|178069 PLN02450, PLN02450, 1-aminocyclopropane-1-carboxylate synthase.
Length = 468
Score = 25.5 bits (56), Expect = 9.6
Identities = 16/63 (25%), Positives = 33/63 (52%), Gaps = 6/63 (9%)
Query: 45 NKLGLKSEHRVRYNQHYSNVFH--SNSEHLVALELSEQEPSLLNLVEKWLERTP---GLE 99
N G S + + + ++ N + N ++ + L+E + S +L+E WL + P GL+
Sbjct: 11 NSHGQDSSYFLGWEEYEKNPYDEIKNPSGIIQMGLAENQLSF-DLIESWLAKNPDAAGLK 69
Query: 100 KDG 102
++G
Sbjct: 70 RNG 72
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.134 0.387
Gapped
Lambda K H
0.267 0.0769 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 6,432,137
Number of extensions: 548768
Number of successful extensions: 443
Number of sequences better than 10.0: 1
Number of HSP's gapped: 442
Number of HSP's successfully gapped: 28
Length of query: 130
Length of database: 10,937,602
Length adjustment: 86
Effective length of query: 44
Effective length of database: 7,123,158
Effective search space: 313418952
Effective search space used: 313418952
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (24.1 bits)