RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy305
         (130 letters)



>d2nw8a1 a.266.1.1 (A:23-284) Tryptophan 2,3-dioxygenase
           {Xanthomonas campestris pv. campestris [TaxId: 340]}
          Length = 262

 Score = 70.1 bits (171), Expect = 4e-16
 Identities = 32/106 (30%), Positives = 50/106 (47%), Gaps = 7/106 (6%)

Query: 5   QILVDQVSILETMSPLDFMQFRDYLTPASGFQSLQFRLMENKLGLKSEHRVRYNQHYSNV 64
           + L +Q S+LET++P ++M FRD L P+SGFQSLQ+R +E  LG K+   ++        
Sbjct: 74  RQLTEQWSVLETLTPSEYMGFRDVLGPSSGFQSLQYRYIEFLLGNKNPQMLQV------- 126

Query: 65  FHSNSEHLVALELSEQEPSLLNLVEKWLERTPGLEKDGFDFWTKYQ 110
           F  +      L    + PSL     ++L R        +       
Sbjct: 127 FAYDPAGQARLREVLEAPSLYEEFLRYLARFGHAIPQQYQARDWTA 172


>d1ea5a_ c.69.1.1 (A:) Acetylcholinesterase {Pacific electric ray
           (Torpedo californica) [TaxId: 7787]}
          Length = 532

 Score = 24.3 bits (51), Expect = 5.7
 Identities = 5/32 (15%), Positives = 14/32 (43%)

Query: 78  SEQEPSLLNLVEKWLERTPGLEKDGFDFWTKY 109
           + +E   ++L  + ++    L      FW ++
Sbjct: 493 TTKEQKFIDLNTEPMKVHQRLRVQMCVFWNQF 524


>d2ha2a1 c.69.1.1 (A:1-542) Acetylcholinesterase {Mouse (Mus
           musculus) [TaxId: 10090]}
          Length = 542

 Score = 24.3 bits (51), Expect = 7.3
 Identities = 8/32 (25%), Positives = 13/32 (40%)

Query: 78  SEQEPSLLNLVEKWLERTPGLEKDGFDFWTKY 109
           +      ++L  K LE   GL      FW ++
Sbjct: 504 TTAAQQYVSLNLKPLEVRRGLRAQTCAFWNRF 535


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.134    0.387 

Gapped
Lambda     K      H
   0.267   0.0610    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 451,185
Number of extensions: 18005
Number of successful extensions: 34
Number of sequences better than 10.0: 1
Number of HSP's gapped: 34
Number of HSP's successfully gapped: 5
Length of query: 130
Length of database: 2,407,596
Length adjustment: 76
Effective length of query: 54
Effective length of database: 1,364,116
Effective search space: 73662264
Effective search space used: 73662264
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (22.5 bits)