BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3051
(111 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3K40|A Chain A, Crystal Structure Of Drosophila 3,4-Dihydroxyphenylalanine
Decarboxylase
pdb|3K40|B Chain B, Crystal Structure Of Drosophila 3,4-Dihydroxyphenylalanine
Decarboxylase
Length = 475
Score = 134 bits (336), Expect = 2e-32, Method: Composition-based stats.
Identities = 51/105 (48%), Positives = 79/105 (75%)
Query: 1 MNSEEFREFGKAAIDFIADYHDTVRQRQVLPSVQPGYLASLVPGEMPEEGEDWRHIMRDM 60
M + EF++F K +DFIA+Y + +R+R+VLP V+PGYL L+P PE+ E W+ +M+D+
Sbjct: 1 MEAPEFKDFAKTMVDFIAEYLENIRERRVLPEVKPGYLKPLIPDAAPEKPEKWQDVMQDI 60
Query: 61 NTVIMPGITHWQSPHFHAFYPSASSFPSILGELLSTGLGVLSFTW 105
VIMPG+THW SP FHA++P+A+S+P+I+ ++LS + + FTW
Sbjct: 61 ERVIMPGVTHWHSPKFHAYFPTANSYPAIVADMLSGAIACIGFTW 105
>pdb|4E1O|A Chain A, Human Histidine Decarboxylase Complex With Histidine
Methyl Ester (Hme)
pdb|4E1O|B Chain B, Human Histidine Decarboxylase Complex With Histidine
Methyl Ester (Hme)
pdb|4E1O|C Chain C, Human Histidine Decarboxylase Complex With Histidine
Methyl Ester (Hme)
pdb|4E1O|D Chain D, Human Histidine Decarboxylase Complex With Histidine
Methyl Ester (Hme)
pdb|4E1O|E Chain E, Human Histidine Decarboxylase Complex With Histidine
Methyl Ester (Hme)
pdb|4E1O|F Chain F, Human Histidine Decarboxylase Complex With Histidine
Methyl Ester (Hme)
Length = 481
Score = 124 bits (311), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 51/106 (48%), Positives = 74/106 (69%)
Query: 1 MNSEEFREFGKAAIDFIADYHDTVRQRQVLPSVQPGYLASLVPGEMPEEGEDWRHIMRDM 60
M EE+RE G+ +D+I Y TVR+R+V P VQPGYL + +P PE+ + W I D+
Sbjct: 6 MEPEEYRERGREMVDYICQYLSTVRERRVTPDVQPGYLRAQLPESAPEDPDSWDSIFGDI 65
Query: 61 NTVIMPGITHWQSPHFHAFYPSASSFPSILGELLSTGLGVLSFTWS 106
+IMPG+ HWQSPH HA+YP+ +S+PS+LG++L+ + L FTW+
Sbjct: 66 ERIIMPGVVHWQSPHMHAYYPALTSWPSLLGDMLADAINCLGFTWA 111
>pdb|1JS3|A Chain A, Crystal Structure Of Dopa Decarboxylase In Complex With
The Inhibitor Carbidopa
pdb|1JS3|B Chain B, Crystal Structure Of Dopa Decarboxylase In Complex With
The Inhibitor Carbidopa
pdb|1JS6|A Chain A, Crystal Structure Of Dopa Decarboxylase
pdb|1JS6|B Chain B, Crystal Structure Of Dopa Decarboxylase
Length = 486
Score = 120 bits (301), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 47/106 (44%), Positives = 76/106 (71%)
Query: 1 MNSEEFREFGKAAIDFIADYHDTVRQRQVLPSVQPGYLASLVPGEMPEEGEDWRHIMRDM 60
MN+ +FR GK +D++ADY + + RQV P VQPGYL L+P P+E + + I++D+
Sbjct: 1 MNASDFRRRGKEMVDYMADYLEGIEGRQVYPDVQPGYLRPLIPATAPQEPDTFEDILQDV 60
Query: 61 NTVIMPGITHWQSPHFHAFYPSASSFPSILGELLSTGLGVLSFTWS 106
+IMPG+THW SP+F A++P+ASS+P++L ++L +G + F+W+
Sbjct: 61 EKIIMPGVTHWHSPYFFAYFPTASSYPAMLADMLCGAIGCIGFSWA 106
>pdb|3RCH|A Chain A, Crystal Structure Of Human Aromatic L-Amino Acid
Decarboxylase (Aadc) In The Open Conformation With Llp
And Plp Bound To Chain-A And Chain- B Respectively
Length = 480
Score = 119 bits (297), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 46/106 (43%), Positives = 75/106 (70%)
Query: 1 MNSEEFREFGKAAIDFIADYHDTVRQRQVLPSVQPGYLASLVPGEMPEEGEDWRHIMRDM 60
MN+ EFR GK +D++A+Y + + RQV P V+PGYL L+P P+E + + I+ D+
Sbjct: 1 MNASEFRRRGKEMVDYVANYMEGIEGRQVYPDVEPGYLRPLIPAAAPQEPDTFEDIINDV 60
Query: 61 NTVIMPGITHWQSPHFHAFYPSASSFPSILGELLSTGLGVLSFTWS 106
+IMPG+THW SP+F A++P+ASS+P++L ++L +G + F+W+
Sbjct: 61 EKIIMPGVTHWHSPYFFAYFPTASSYPAMLADMLCGAIGCIGFSWA 106
>pdb|3RBF|A Chain A, Crystal Structure Of Human Aromatic L-Amino Acid
Decarboxylase (Aadc) In The Apo Form
pdb|3RBF|B Chain B, Crystal Structure Of Human Aromatic L-Amino Acid
Decarboxylase (Aadc) In The Apo Form
pdb|3RBL|A Chain A, Crystal Structure Of Human Aromatic L-Amino Acid
Decarboxylase (Aadc) In The Apo Form
pdb|3RBL|B Chain B, Crystal Structure Of Human Aromatic L-Amino Acid
Decarboxylase (Aadc) In The Apo Form
pdb|3RCH|B Chain B, Crystal Structure Of Human Aromatic L-Amino Acid
Decarboxylase (Aadc) In The Open Conformation With Llp
And Plp Bound To Chain-A And Chain- B Respectively
Length = 480
Score = 119 bits (297), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 46/106 (43%), Positives = 75/106 (70%)
Query: 1 MNSEEFREFGKAAIDFIADYHDTVRQRQVLPSVQPGYLASLVPGEMPEEGEDWRHIMRDM 60
MN+ EFR GK +D++A+Y + + RQV P V+PGYL L+P P+E + + I+ D+
Sbjct: 1 MNASEFRRRGKEMVDYVANYMEGIEGRQVYPDVEPGYLRPLIPAAAPQEPDTFEDIINDV 60
Query: 61 NTVIMPGITHWQSPHFHAFYPSASSFPSILGELLSTGLGVLSFTWS 106
+IMPG+THW SP+F A++P+ASS+P++L ++L +G + F+W+
Sbjct: 61 EKIIMPGVTHWHSPYFFAYFPTASSYPAMLADMLCGAIGCIGFSWA 106
>pdb|3ILW|A Chain A, Structure Of Dna Gyrase Subunit A N-Terminal Domain
pdb|3ILW|B Chain B, Structure Of Dna Gyrase Subunit A N-Terminal Domain
Length = 470
Score = 31.6 bits (70), Expect = 0.10, Method: Composition-based stats.
Identities = 15/37 (40%), Positives = 21/37 (56%)
Query: 4 EEFREFGKAAIDFIADYHDTVRQRQVLPSVQPGYLAS 40
E RE + +DFI +Y V++ VLPS P LA+
Sbjct: 110 EMLREIDEETVDFIPNYDGRVQEPTVLPSRFPNLLAN 146
>pdb|2XCS|B Chain B, The 2.1a Crystal Structure Of S. Aureus Gyrase Complex
With Gsk299423 And Dna
pdb|2XCS|D Chain D, The 2.1a Crystal Structure Of S. Aureus Gyrase Complex
With Gsk299423 And Dna
pdb|2XCT|B Chain B, The Twinned 3.35a Structure Of S. Aureus Gyrase Complex
With Ciprofloxacin And Dna
pdb|2XCT|D Chain D, The Twinned 3.35a Structure Of S. Aureus Gyrase Complex
With Ciprofloxacin And Dna
pdb|2XCT|S Chain S, The Twinned 3.35a Structure Of S. Aureus Gyrase Complex
With Ciprofloxacin And Dna
pdb|2XCT|U Chain U, The Twinned 3.35a Structure Of S. Aureus Gyrase Complex
With Ciprofloxacin And Dna
Length = 692
Score = 31.2 bits (69), Expect = 0.15, Method: Composition-based stats.
Identities = 16/41 (39%), Positives = 21/41 (51%)
Query: 4 EEFREFGKAAIDFIADYHDTVRQRQVLPSVQPGYLASLVPG 44
E R+ K IDFI +Y R+ VLP+ P LA+ G
Sbjct: 335 ELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASG 375
>pdb|2XCR|B Chain B, The 3.5a Crystal Structure Of The Catalytic Core (B'a'
Region) Of Staphylococcus Aureus Dna Gyrase Complexed
With Gsk299423 And Dna
pdb|2XCR|D Chain D, The 3.5a Crystal Structure Of The Catalytic Core (B'a'
Region) Of Staphylococcus Aureus Dna Gyrase Complexed
With Gsk299423 And Dna
pdb|2XCR|S Chain S, The 3.5a Crystal Structure Of The Catalytic Core (B'a'
Region) Of Staphylococcus Aureus Dna Gyrase Complexed
With Gsk299423 And Dna
pdb|2XCR|U Chain U, The 3.5a Crystal Structure Of The Catalytic Core (B'a'
Region) Of Staphylococcus Aureus Dna Gyrase Complexed
With Gsk299423 And Dna
Length = 726
Score = 31.2 bits (69), Expect = 0.15, Method: Composition-based stats.
Identities = 16/41 (39%), Positives = 21/41 (51%)
Query: 4 EEFREFGKAAIDFIADYHDTVRQRQVLPSVQPGYLASLVPG 44
E R+ K IDFI +Y R+ VLP+ P LA+ G
Sbjct: 369 ELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASG 409
>pdb|2XCO|A Chain A, The 3.1a Crystal Structure Of The Catalytic Core (B'a'
Region) Of Staphylococcus Aureus Dna Gyrase
pdb|2XCQ|A Chain A, The 2.98a Crystal Structure Of The Catalytic Core (B'a'
Region) Of Staphylococcus Aureus Dna Gyrase
Length = 726
Score = 31.2 bits (69), Expect = 0.15, Method: Composition-based stats.
Identities = 16/41 (39%), Positives = 21/41 (51%)
Query: 4 EEFREFGKAAIDFIADYHDTVRQRQVLPSVQPGYLASLVPG 44
E R+ K IDFI +Y R+ VLP+ P LA+ G
Sbjct: 369 ELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASG 409
>pdb|2INR|A Chain A, Crystal Structure Of A 59 Kda Fragment Of Topoisomerase Iv
Subunit A (Grla) From Staphylococcus Aureus
Length = 514
Score = 30.4 bits (67), Expect = 0.23, Method: Composition-based stats.
Identities = 14/40 (35%), Positives = 20/40 (50%)
Query: 1 MNSEEFREFGKAAIDFIADYHDTVRQRQVLPSVQPGYLAS 40
+ E R+ K + FI +Y DT + VLPS P L +
Sbjct: 150 LAEELLRDINKETVSFIPNYDDTTLEPMVLPSRFPNLLVN 189
>pdb|3IFZ|A Chain A, Crystal Structure Of The First Part Of The Mycobacterium
Tuberculosis Dna Gyrase Reaction Core: The Breakage And
Reunion Domain At 2.7 A Resolution
pdb|3IFZ|B Chain B, Crystal Structure Of The First Part Of The Mycobacterium
Tuberculosis Dna Gyrase Reaction Core: The Breakage And
Reunion Domain At 2.7 A Resolution
Length = 508
Score = 29.6 bits (65), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 21/37 (56%)
Query: 4 EEFREFGKAAIDFIADYHDTVRQRQVLPSVQPGYLAS 40
E RE + +DFI +Y V++ VLPS P LA+
Sbjct: 140 EMLREIDEETVDFIPNYDGRVQEPTVLPSRFPNLLAN 176
>pdb|4FVP|A Chain A, Crystal Structure Of The Jak2 Pseudokinase Domain (Apo
Form)
pdb|4FVQ|A Chain A, Crystal Structure Of The Jak2 Pseudokinase Domain
(Mg-Atp-Bound Form)
Length = 289
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
Query: 27 RQVLPSVQPGYLASLVPGEM---PEEGEDWRHIMRDMNTVIMPGIT 69
R LP+ + LA+L+ M P+ +R I+RD+N++ P +
Sbjct: 234 RHQLPAPKAAELANLINNCMDYEPDHRPSFRAIIRDLNSLFTPDLV 279
>pdb|4FVR|A Chain A, Crystal Structure Of The Jak2 Pseudokinase Domain Mutant
V617f (Mg- Atp-Bound Form)
Length = 289
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
Query: 27 RQVLPSVQPGYLASLVPGEM---PEEGEDWRHIMRDMNTVIMPGIT 69
R LP+ + LA+L+ M P+ +R I+RD+N++ P +
Sbjct: 234 RHQLPAPKAAELANLINNCMDYEPDHRPSFRAIIRDLNSLFTPDLV 279
>pdb|2INU|A Chain A, Crystal Structure Of Insulin Fructotransferase In The
Absence Of Substrate
pdb|2INU|B Chain B, Crystal Structure Of Insulin Fructotransferase In The
Absence Of Substrate
pdb|2INU|C Chain C, Crystal Structure Of Insulin Fructotransferase In The
Absence Of Substrate
pdb|2INV|A Chain A, Crystal Structure Of Insulin Fructotransferase In The
Presence Of Di- Fructose
pdb|2INV|B Chain B, Crystal Structure Of Insulin Fructotransferase In The
Presence Of Di- Fructose
pdb|2INV|C Chain C, Crystal Structure Of Insulin Fructotransferase In The
Presence Of Di- Fructose
Length = 410
Score = 26.2 bits (56), Expect = 5.5, Method: Composition-based stats.
Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 4/38 (10%)
Query: 8 EFGKAAIDFIADYHDTVRQRQVLPSVQPGYLASLVPGE 45
+ G D IAD ++QRQ P +PG + PG+
Sbjct: 33 DIGAVINDIIAD----IKQRQTSPDARPGAAIIIPPGD 66
>pdb|2DNC|A Chain A, Solution Structure Of Rsgi Ruh-054, A Lipoyl Domain From
Human 2-Oxoacid Dehydrogenase
Length = 98
Score = 25.8 bits (55), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Query: 8 EFGKAAIDFIADYHDTVRQRQVLPSVQPGYLASLVPGEMPEEGEDWRHI 56
E KA + A + + V + L SL+ G + EEGEDW+H+
Sbjct: 45 ETDKAVVTLDASDDGILAKIVVEEGSKNIRLGSLI-GLIVEEGEDWKHV 92
>pdb|3TB5|A Chain A, Crystal Structure Of The Enterococcus Faecalis
Methionine Aminopeptidase Apo Form
pdb|3TB5|B Chain B, Crystal Structure Of The Enterococcus Faecalis
Methionine Aminopeptidase Apo Form
pdb|3TB5|C Chain C, Crystal Structure Of The Enterococcus Faecalis
Methionine Aminopeptidase Apo Form
Length = 264
Score = 25.8 bits (55), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 15/31 (48%)
Query: 46 MPEEGEDWRHIMRDMNTVIMPGITHWQSPHF 76
M E GE + R + T I PGIT W F
Sbjct: 13 MDESGELLADVHRHLRTFIKPGITSWDIEVF 43
>pdb|3TU6|A Chain A, The Structure Of A Pseudoazurin From Sinorhizobium
Meliltoi
Length = 127
Score = 25.4 bits (54), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 25/44 (56%), Gaps = 3/44 (6%)
Query: 36 GYLASLVPGEMPEEGEDWRHIMRDMNTVIM--PGITHWQ-SPHF 76
G+ ++L+ G PE E W+ + + TV + PG+ +Q +PH
Sbjct: 41 GHNSALMKGGAPEGAETWKGKINEEITVTLSKPGVYMYQCAPHV 84
>pdb|1ZY8|K Chain K, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
And Dihydrolipoamide Dehydrogenase-Binding Protein
(Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
Complex.
pdb|1ZY8|L Chain L, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
And Dihydrolipoamide Dehydrogenase-Binding Protein
(Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
Complex.
pdb|1ZY8|M Chain M, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
And Dihydrolipoamide Dehydrogenase-Binding Protein
(Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
Complex.
pdb|1ZY8|N Chain N, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
And Dihydrolipoamide Dehydrogenase-Binding Protein
(Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
Complex.
pdb|1ZY8|O Chain O, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
And Dihydrolipoamide Dehydrogenase-Binding Protein
(Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
Complex
Length = 229
Score = 25.4 bits (54), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 11/19 (57%), Positives = 15/19 (78%), Gaps = 1/19 (5%)
Query: 38 LASLVPGEMPEEGEDWRHI 56
L SL+ G + EEGEDW+H+
Sbjct: 71 LGSLI-GLIVEEGEDWKHV 88
>pdb|3OAA|D Chain D, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|E Chain E, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|F Chain F, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|L Chain L, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|M Chain M, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|N Chain N, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|T Chain T, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|U Chain U, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|V Chain V, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|BB Chain b, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|CC Chain c, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|DD Chain d, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
Length = 459
Score = 25.4 bits (54), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 33/88 (37%), Gaps = 17/88 (19%)
Query: 2 NSEEFREFGKAAIDFI--------------ADYHDTVRQRQVLPSV---QPGYLASLVPG 44
NS+E E G ID + A TV +++ ++ GY G
Sbjct: 121 NSQELLETGIKVIDLMCPFAKGGKVGLFGGAGVGKTVNMMELIRNIAIEHSGYSVFAGVG 180
Query: 45 EMPEEGEDWRHIMRDMNTVIMPGITHWQ 72
E EG D+ H M D N + + + Q
Sbjct: 181 ERTREGNDFYHEMTDSNVIDKVSLVYGQ 208
>pdb|3T9O|A Chain A, Regulatory Czb Domain Of Ydeh
pdb|3T9O|B Chain B, Regulatory Czb Domain Of Ydeh
Length = 135
Score = 25.0 bits (53), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 10/24 (41%), Positives = 12/24 (50%)
Query: 69 THWQSPHFHAFYPSASSFPSILGE 92
HWQ HF AF SF + L +
Sbjct: 97 NHWQDAHFDAFQEGLLSFTAALTD 120
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.434
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,735,904
Number of Sequences: 62578
Number of extensions: 144776
Number of successful extensions: 318
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 305
Number of HSP's gapped (non-prelim): 22
length of query: 111
length of database: 14,973,337
effective HSP length: 75
effective length of query: 36
effective length of database: 10,279,987
effective search space: 370079532
effective search space used: 370079532
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)