BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3051
(111 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P18486|L2AM_DROME Alpha-methyldopa hypersensitive protein OS=Drosophila melanogaster
GN=amd PE=2 SV=2
Length = 510
Score = 151 bits (381), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 62/105 (59%), Positives = 88/105 (83%)
Query: 1 MNSEEFREFGKAAIDFIADYHDTVRQRQVLPSVQPGYLASLVPGEMPEEGEDWRHIMRDM 60
M+++EFREFGKAAID+IADY + +R VLP+V+PGYL L+P EMPEE E W+ ++ D+
Sbjct: 1 MDAKEFREFGKAAIDYIADYLENIRDDDVLPNVEPGYLLDLLPTEMPEEPEAWKDVLGDI 60
Query: 61 NTVIMPGITHWQSPHFHAFYPSASSFPSILGELLSTGLGVLSFTW 105
+ VI PG+THWQSPH HA+YP+++S+PSI+GE+L++G GV+ F+W
Sbjct: 61 SRVIKPGLTHWQSPHMHAYYPTSTSYPSIVGEMLASGFGVIGFSW 105
>sp|P05031|DDC_DROME Aromatic-L-amino-acid decarboxylase OS=Drosophila melanogaster
GN=Ddc PE=1 SV=4
Length = 510
Score = 134 bits (336), Expect = 2e-31, Method: Composition-based stats.
Identities = 51/105 (48%), Positives = 79/105 (75%)
Query: 1 MNSEEFREFGKAAIDFIADYHDTVRQRQVLPSVQPGYLASLVPGEMPEEGEDWRHIMRDM 60
M + EF++F K +DFIA+Y + +R+R+VLP V+PGYL L+P PE+ E W+ +M+D+
Sbjct: 36 MEAPEFKDFAKTMVDFIAEYLENIRERRVLPEVKPGYLKPLIPDAAPEKPEKWQDVMQDI 95
Query: 61 NTVIMPGITHWQSPHFHAFYPSASSFPSILGELLSTGLGVLSFTW 105
VIMPG+THW SP FHA++P+A+S+P+I+ ++LS + + FTW
Sbjct: 96 ERVIMPGVTHWHSPKFHAYFPTANSYPAIVADMLSGAIACIGFTW 140
>sp|O96567|DDC_DROSI Aromatic-L-amino-acid decarboxylase OS=Drosophila simulans GN=Ddc
PE=3 SV=2
Length = 510
Score = 133 bits (334), Expect = 4e-31, Method: Composition-based stats.
Identities = 51/105 (48%), Positives = 78/105 (74%)
Query: 1 MNSEEFREFGKAAIDFIADYHDTVRQRQVLPSVQPGYLASLVPGEMPEEGEDWRHIMRDM 60
M + EF++F K +DFIA+Y + +R R+VLP V+PGYL L+P PE+ E W+ +M+D+
Sbjct: 36 MEAPEFKDFAKTMVDFIAEYLENIRDRRVLPEVKPGYLKPLIPDAAPEKPEKWQDVMQDI 95
Query: 61 NTVIMPGITHWQSPHFHAFYPSASSFPSILGELLSTGLGVLSFTW 105
VIMPG+THW SP FHA++P+A+S+P+I+ ++LS + + FTW
Sbjct: 96 ERVIMPGVTHWHSPKFHAYFPTANSYPAIVADMLSGAIACIGFTW 140
>sp|P48861|DDC_MANSE Aromatic-L-amino-acid decarboxylase OS=Manduca sexta GN=Ddc PE=2
SV=1
Length = 508
Score = 128 bits (321), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 51/105 (48%), Positives = 77/105 (73%)
Query: 1 MNSEEFREFGKAAIDFIADYHDTVRQRQVLPSVQPGYLASLVPGEMPEEGEDWRHIMRDM 60
MN +F++F KA D+I +Y + +R RQV+PSV+PGYL LVP + P++ E W +M D+
Sbjct: 1 MNPGDFKDFAKAMTDYITEYLENIRDRQVVPSVKPGYLRPLVPEQAPQQAEPWTAVMADI 60
Query: 61 NTVIMPGITHWQSPHFHAFYPSASSFPSILGELLSTGLGVLSFTW 105
V+M G+THWQSP FHA++P+A+S+PSI+ ++LS + + FTW
Sbjct: 61 ERVVMSGVTHWQSPRFHAYFPTANSYPSIVADMLSGAIACIGFTW 105
>sp|Q05733|DCHS_DROME Histidine decarboxylase OS=Drosophila melanogaster GN=Hdc PE=2 SV=2
Length = 847
Score = 127 bits (319), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 51/106 (48%), Positives = 76/106 (71%)
Query: 1 MNSEEFREFGKAAIDFIADYHDTVRQRQVLPSVQPGYLASLVPGEMPEEGEDWRHIMRDM 60
M+ +E+R+ GK +D+IADY + +R+R+V P V PGY+ L+P P EGE W I D+
Sbjct: 1 MDFKEYRQRGKEMVDYIADYLENIRERRVFPDVSPGYMRQLLPESAPIEGEPWPKIFSDV 60
Query: 61 NTVIMPGITHWQSPHFHAFYPSASSFPSILGELLSTGLGVLSFTWS 106
++MPGITHWQSPH HA++P+ +S PS+LG++L+ + L FTW+
Sbjct: 61 ERIVMPGITHWQSPHMHAYFPALNSMPSLLGDMLADAINCLGFTWA 106
>sp|P19113|DCHS_HUMAN Histidine decarboxylase OS=Homo sapiens GN=HDC PE=1 SV=2
Length = 662
Score = 125 bits (313), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 51/106 (48%), Positives = 74/106 (69%)
Query: 1 MNSEEFREFGKAAIDFIADYHDTVRQRQVLPSVQPGYLASLVPGEMPEEGEDWRHIMRDM 60
M EE+RE G+ +D+I Y TVR+R+V P VQPGYL + +P PE+ + W I D+
Sbjct: 2 MEPEEYRERGREMVDYICQYLSTVRERRVTPDVQPGYLRAQLPESAPEDPDSWDSIFGDI 61
Query: 61 NTVIMPGITHWQSPHFHAFYPSASSFPSILGELLSTGLGVLSFTWS 106
+IMPG+ HWQSPH HA+YP+ +S+PS+LG++L+ + L FTW+
Sbjct: 62 ERIIMPGVVHWQSPHMHAYYPALTSWPSLLGDMLADAINCLGFTWA 107
>sp|P14173|DDC_RAT Aromatic-L-amino-acid decarboxylase OS=Rattus norvegicus GN=Ddc
PE=1 SV=1
Length = 480
Score = 124 bits (310), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 50/106 (47%), Positives = 76/106 (71%)
Query: 1 MNSEEFREFGKAAIDFIADYHDTVRQRQVLPSVQPGYLASLVPGEMPEEGEDWRHIMRDM 60
M+S EFR GK +D+IADY D + R V P V+PGYL +L+P P+E E + I+RD+
Sbjct: 1 MDSREFRRRGKEMVDYIADYLDGIEGRPVYPDVEPGYLRALIPTTAPQEPETYEDIIRDI 60
Query: 61 NTVIMPGITHWQSPHFHAFYPSASSFPSILGELLSTGLGVLSFTWS 106
+IMPG+THW SP+F A++P+ASS+P++L ++L +G + F+W+
Sbjct: 61 EKIIMPGVTHWHSPYFFAYFPTASSYPAMLADMLCGAIGCIGFSWA 106
>sp|Q8RY79|TYDC1_ARATH Tyrosine decarboxylase 1 OS=Arabidopsis thaliana GN=ELI5 PE=2 SV=1
Length = 490
Score = 122 bits (307), Expect = 6e-28, Method: Composition-based stats.
Identities = 52/105 (49%), Positives = 70/105 (66%)
Query: 1 MNSEEFREFGKAAIDFIADYHDTVRQRQVLPSVQPGYLASLVPGEMPEEGEDWRHIMRDM 60
M+SE+ RE+G +DFIADY+ T+ VL VQPGYL L+P P+ E ++ D+
Sbjct: 12 MDSEQLREYGHLMVDFIADYYKTIEDFPVLSQVQPGYLHKLLPDSAPDHPETLDQVLDDV 71
Query: 61 NTVIMPGITHWQSPHFHAFYPSASSFPSILGELLSTGLGVLSFTW 105
I+PG+THWQSP F A+YPS SS LGE+LS GLG++ F+W
Sbjct: 72 RAKILPGVTHWQSPSFFAYYPSNSSVAGFLGEMLSAGLGIVGFSW 116
>sp|Q5EA83|DCHS_BOVIN Histidine decarboxylase OS=Bos taurus GN=HDC PE=2 SV=1
Length = 658
Score = 122 bits (306), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 51/106 (48%), Positives = 73/106 (68%)
Query: 1 MNSEEFREFGKAAIDFIADYHDTVRQRQVLPSVQPGYLASLVPGEMPEEGEDWRHIMRDM 60
M EE+RE GK +D+I Y TVR+R+V P V+PGYL + +P P E + W I D+
Sbjct: 2 MEPEEYRERGKEMVDYICQYLTTVRERRVTPDVRPGYLRAQLPESAPMEPDSWDSIFGDI 61
Query: 61 NTVIMPGITHWQSPHFHAFYPSASSFPSILGELLSTGLGVLSFTWS 106
+IMPG+ HWQSPH HA+YP+ +S+PS+LG++L+ + L FTW+
Sbjct: 62 ERIIMPGVVHWQSPHMHAYYPALTSWPSLLGDMLADAINCLGFTWA 107
>sp|P16453|DCHS_RAT Histidine decarboxylase OS=Rattus norvegicus GN=Hdc PE=2 SV=2
Length = 656
Score = 121 bits (304), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 49/102 (48%), Positives = 72/102 (70%)
Query: 5 EFREFGKAAIDFIADYHDTVRQRQVLPSVQPGYLASLVPGEMPEEGEDWRHIMRDMNTVI 64
E++ GK +D+I Y TVR+RQV P+V+PGYL + +P PEE + W I D+ +I
Sbjct: 9 EYQARGKEMVDYICQYLSTVRERQVTPNVKPGYLRAQIPSSAPEEPDSWDSIFGDIEQII 68
Query: 65 MPGITHWQSPHFHAFYPSASSFPSILGELLSTGLGVLSFTWS 106
MPG+ HWQSPH HA+YP+ +S+PS+LG++L+ + L FTW+
Sbjct: 69 MPGVVHWQSPHMHAYYPALTSWPSLLGDMLADAINCLGFTWA 110
>sp|P23738|DCHS_MOUSE Histidine decarboxylase OS=Mus musculus GN=Hdc PE=1 SV=2
Length = 662
Score = 121 bits (303), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 50/97 (51%), Positives = 70/97 (72%)
Query: 10 GKAAIDFIADYHDTVRQRQVLPSVQPGYLASLVPGEMPEEGEDWRHIMRDMNTVIMPGIT 69
GK +D+I+ Y TVR+RQV P+VQPGYL + +P PEE + W I D+ VIMPG+
Sbjct: 18 GKEMVDYISQYLSTVRERQVTPNVQPGYLRAQLPASAPEEPDSWDSIFGDIERVIMPGVV 77
Query: 70 HWQSPHFHAFYPSASSFPSILGELLSTGLGVLSFTWS 106
HWQSPH HA+YP+ +S+PS+LG++L+ + L FTW+
Sbjct: 78 HWQSPHMHAYYPALTSWPSLLGDMLADAINCLGFTWA 114
>sp|P27718|DDC_BOVIN Aromatic-L-amino-acid decarboxylase OS=Bos taurus GN=DDC PE=2 SV=2
Length = 487
Score = 120 bits (301), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 48/106 (45%), Positives = 74/106 (69%)
Query: 1 MNSEEFREFGKAAIDFIADYHDTVRQRQVLPSVQPGYLASLVPGEMPEEGEDWRHIMRDM 60
MN+ EFR GK +D++ADY + + RQV P V PGYL L+P P+E E + I+ D+
Sbjct: 1 MNASEFRRRGKEMVDYVADYLEGIEGRQVFPDVDPGYLRPLIPTTAPQEPETFEAIIEDI 60
Query: 61 NTVIMPGITHWQSPHFHAFYPSASSFPSILGELLSTGLGVLSFTWS 106
+IMPG+THW SP+F A++P+ASS+P++L ++L +G + F+W+
Sbjct: 61 EKIIMPGVTHWHSPYFFAYFPTASSYPAMLADMLCGAIGCIGFSWA 106
>sp|P80041|DDC_PIG Aromatic-L-amino-acid decarboxylase OS=Sus scrofa GN=DDC PE=1 SV=2
Length = 486
Score = 120 bits (301), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 47/106 (44%), Positives = 76/106 (71%)
Query: 1 MNSEEFREFGKAAIDFIADYHDTVRQRQVLPSVQPGYLASLVPGEMPEEGEDWRHIMRDM 60
MN+ +FR GK +D++ADY + + RQV P VQPGYL L+P P+E + + I++D+
Sbjct: 1 MNASDFRRRGKEMVDYMADYLEGIEGRQVYPDVQPGYLRPLIPATAPQEPDTFEDILQDV 60
Query: 61 NTVIMPGITHWQSPHFHAFYPSASSFPSILGELLSTGLGVLSFTWS 106
+IMPG+THW SP+F A++P+ASS+P++L ++L +G + F+W+
Sbjct: 61 EKIIMPGVTHWHSPYFFAYFPTASSYPAMLADMLCGAIGCIGFSWA 106
>sp|P20711|DDC_HUMAN Aromatic-L-amino-acid decarboxylase OS=Homo sapiens GN=DDC PE=1
SV=2
Length = 480
Score = 118 bits (296), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 46/106 (43%), Positives = 75/106 (70%)
Query: 1 MNSEEFREFGKAAIDFIADYHDTVRQRQVLPSVQPGYLASLVPGEMPEEGEDWRHIMRDM 60
MN+ EFR GK +D++A+Y + + RQV P V+PGYL L+P P+E + + I+ D+
Sbjct: 1 MNASEFRRRGKEMVDYMANYMEGIEGRQVYPDVEPGYLRPLIPAAAPQEPDTFEDIINDV 60
Query: 61 NTVIMPGITHWQSPHFHAFYPSASSFPSILGELLSTGLGVLSFTWS 106
+IMPG+THW SP+F A++P+ASS+P++L ++L +G + F+W+
Sbjct: 61 EKIIMPGVTHWHSPYFFAYFPTASSYPAMLADMLCGAIGCIGFSWA 106
>sp|P22781|DDC_CAVPO Aromatic-L-amino-acid decarboxylase OS=Cavia porcellus GN=DDC PE=2
SV=1
Length = 480
Score = 115 bits (288), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 46/106 (43%), Positives = 73/106 (68%)
Query: 1 MNSEEFREFGKAAIDFIADYHDTVRQRQVLPSVQPGYLASLVPGEMPEEGEDWRHIMRDM 60
MN+ EFR GK +D++A+Y + + R V P V+PGYL L+P PEE E + I+ D+
Sbjct: 1 MNASEFRRRGKEMVDYVANYLEGIESRLVYPDVEPGYLRPLIPSSAPEEPETYEDIIGDI 60
Query: 61 NTVIMPGITHWQSPHFHAFYPSASSFPSILGELLSTGLGVLSFTWS 106
+IMPG+THW SP+F A++P+A+S+PS+L ++L + + F+W+
Sbjct: 61 ERIIMPGVTHWNSPYFFAYFPTANSYPSMLADMLCGAISCIGFSWA 106
>sp|O88533|DDC_MOUSE Aromatic-L-amino-acid decarboxylase OS=Mus musculus GN=Ddc PE=2
SV=1
Length = 480
Score = 108 bits (271), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 49/106 (46%), Positives = 75/106 (70%)
Query: 1 MNSEEFREFGKAAIDFIADYHDTVRQRQVLPSVQPGYLASLVPGEMPEEGEDWRHIMRDM 60
M+S EFR GK +D+IADY D + R V P V+PGYL L+P P+E E + I++D+
Sbjct: 1 MDSREFRRRGKEMVDYIADYLDGIEGRPVYPDVEPGYLRPLIPATAPQEPETYEDIIKDI 60
Query: 61 NTVIMPGITHWQSPHFHAFYPSASSFPSILGELLSTGLGVLSFTWS 106
+IMPG+THW SP+F A++P+ASS+P++L ++L +G + F+W+
Sbjct: 61 EKIIMPGVTHWHSPYFFAYFPTASSYPAMLADMLCGAIGCIGFSWA 106
>sp|Q06087|TYDC3_PETCR Tyrosine decarboxylase 3 OS=Petroselinum crispum GN=TYRDC-3 PE=2
SV=1
Length = 516
Score = 108 bits (271), Expect = 7e-24, Method: Composition-based stats.
Identities = 49/105 (46%), Positives = 64/105 (60%)
Query: 1 MNSEEFREFGKAAIDFIADYHDTVRQRQVLPSVQPGYLASLVPGEMPEEGEDWRHIMRDM 60
+ EEFR G IDF+ADY+ V V V PGYL ++P P E I++D+
Sbjct: 22 LEPEEFRRQGHLMIDFLADYYRKVENYPVRSQVSPGYLREILPESAPYNPESLETILQDV 81
Query: 61 NTVIMPGITHWQSPHFHAFYPSASSFPSILGELLSTGLGVLSFTW 105
T I+PGITHWQSP+F A++PS+ S LGE+LSTG V+ F W
Sbjct: 82 QTKIIPGITHWQSPNFFAYFPSSGSTAGFLGEMLSTGFNVVGFNW 126
>sp|Q06086|TYDC2_PETCR Tyrosine decarboxylase 2 OS=Petroselinum crispum GN=TYRDC-2 PE=2
SV=1
Length = 514
Score = 108 bits (271), Expect = 8e-24, Method: Composition-based stats.
Identities = 49/105 (46%), Positives = 64/105 (60%)
Query: 1 MNSEEFREFGKAAIDFIADYHDTVRQRQVLPSVQPGYLASLVPGEMPEEGEDWRHIMRDM 60
+ EEFR G IDF+ADY+ V V V PGYL ++P P E I++D+
Sbjct: 20 LEPEEFRRQGHMMIDFLADYYRKVENYPVRSQVSPGYLREILPESAPYNPESLETILQDV 79
Query: 61 NTVIMPGITHWQSPHFHAFYPSASSFPSILGELLSTGLGVLSFTW 105
T I+PGITHWQSP+F A++PS+ S LGE+LSTG V+ F W
Sbjct: 80 QTKIIPGITHWQSPNFFAYFPSSGSTAGFLGEMLSTGFNVVGFNW 124
>sp|Q06088|TYDC4_PETCR Tyrosine decarboxylase 4 OS=Petroselinum crispum GN=TYRDC-4 PE=2
SV=1
Length = 508
Score = 108 bits (271), Expect = 8e-24, Method: Composition-based stats.
Identities = 49/105 (46%), Positives = 64/105 (60%)
Query: 1 MNSEEFREFGKAAIDFIADYHDTVRQRQVLPSVQPGYLASLVPGEMPEEGEDWRHIMRDM 60
+ EEFR G IDF+ADY+ V V V PGYL ++P P E I++D+
Sbjct: 21 LEPEEFRRQGHLMIDFLADYYRKVENYPVRSQVSPGYLREILPESAPYNPESLETILQDV 80
Query: 61 NTVIMPGITHWQSPHFHAFYPSASSFPSILGELLSTGLGVLSFTW 105
T I+PGITHWQSP+F A++PS+ S LGE+LSTG V+ F W
Sbjct: 81 QTKIIPGITHWQSPNFFAYFPSSGSTAGFLGEMLSTGFNVVGFNW 125
>sp|Q06085|TYDC1_PETCR Tyrosine decarboxylase 1 (Fragment) OS=Petroselinum crispum
GN=TYRDC-1 PE=2 SV=1
Length = 432
Score = 106 bits (265), Expect = 4e-23, Method: Composition-based stats.
Identities = 48/101 (47%), Positives = 62/101 (61%)
Query: 5 EFREFGKAAIDFIADYHDTVRQRQVLPSVQPGYLASLVPGEMPEEGEDWRHIMRDMNTVI 64
EFR G IDF+ADY+ V V V PGYL ++P P E I++D+ T I
Sbjct: 1 EFRRQGHLMIDFLADYYRKVENYPVRSQVSPGYLREILPESAPYNPESLETILQDVQTKI 60
Query: 65 MPGITHWQSPHFHAFYPSASSFPSILGELLSTGLGVLSFTW 105
+PGITHWQSP+F A++PS+ S LGE+LSTG V+ F W
Sbjct: 61 IPGITHWQSPNFFAYFPSSGSTAGFLGEMLSTGFNVVGFNW 101
>sp|Q9M0G4|TYDC2_ARATH Probable tyrosine decarboxylase 2 OS=Arabidopsis thaliana
GN=At4g28680 PE=2 SV=1
Length = 545
Score = 105 bits (263), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 51/109 (46%), Positives = 70/109 (64%), Gaps = 4/109 (3%)
Query: 1 MNSEEFREFGKAAIDFIADYH----DTVRQRQVLPSVQPGYLASLVPGEMPEEGEDWRHI 56
M+SE RE G +DFIADY+ D+ + VL VQPGYL ++P PE E + +
Sbjct: 60 MDSELLREQGHIMVDFIADYYKNLQDSPQDFPVLSQVQPGYLRDMLPDSAPERPESLKEL 119
Query: 57 MRDMNTVIMPGITHWQSPHFHAFYPSASSFPSILGELLSTGLGVLSFTW 105
+ D++ IMPGITHWQSP + A+Y S++S LGE+L+ GL V+ FTW
Sbjct: 120 LDDVSKKIMPGITHWQSPSYFAYYASSTSVAGFLGEMLNAGLSVVGFTW 168
>sp|P54769|TYDC2_PAPSO Tyrosine/DOPA decarboxylase 2 OS=Papaver somniferum GN=TYDC2 PE=2
SV=1
Length = 531
Score = 103 bits (256), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 47/105 (44%), Positives = 67/105 (63%)
Query: 1 MNSEEFREFGKAAIDFIADYHDTVRQRQVLPSVQPGYLASLVPGEMPEEGEDWRHIMRDM 60
++ EEFR G IDF+ADY+ V + V V+PGYL +P P E I++D+
Sbjct: 22 LDPEEFRRQGHMIIDFLADYYRDVEKYPVRSQVEPGYLRKRLPETAPYNPESIETILQDV 81
Query: 61 NTVIMPGITHWQSPHFHAFYPSASSFPSILGELLSTGLGVLSFTW 105
T I+PG+THWQSP+++A++PS+ S LGE+LSTG V+ F W
Sbjct: 82 TTEIIPGLTHWQSPNYYAYFPSSGSVAGFLGEMLSTGFNVVGFNW 126
>sp|P54768|TYDC1_PAPSO Tyrosine/DOPA decarboxylase 1 OS=Papaver somniferum GN=TYDC1 PE=2
SV=1
Length = 518
Score = 103 bits (256), Expect = 4e-22, Method: Composition-based stats.
Identities = 45/105 (42%), Positives = 63/105 (60%)
Query: 1 MNSEEFREFGKAAIDFIADYHDTVRQRQVLPSVQPGYLASLVPGEMPEEGEDWRHIMRDM 60
++ +EFR G IDF+ADY+ V + V V PGYL +P P E I+ D+
Sbjct: 20 LDPDEFRRQGHMIIDFLADYYKNVEKYPVRTQVDPGYLKKRLPESAPYNPESIETILEDV 79
Query: 61 NTVIMPGITHWQSPHFHAFYPSASSFPSILGELLSTGLGVLSFTW 105
I+PG+THWQSP++ A++PS+ S LGE+LSTG V+ F W
Sbjct: 80 TNDIIPGLTHWQSPNYFAYFPSSGSIAGFLGEMLSTGFNVVGFNW 124
>sp|Q7XHL3|TYDC1_ORYSJ Tyrosine decarboxylase 1 OS=Oryza sativa subsp. japonica
GN=Os07g0437500 PE=2 SV=1
Length = 497
Score = 102 bits (255), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 43/105 (40%), Positives = 66/105 (62%)
Query: 1 MNSEEFREFGKAAIDFIADYHDTVRQRQVLPSVQPGYLASLVPGEMPEEGEDWRHIMRDM 60
M++E+ RE G +DF+ADY+ ++ VL VQPGYL ++P P + + + D+
Sbjct: 17 MDAEQLRECGHRMVDFVADYYKSIEAFPVLSQVQPGYLKEVLPDSAPRQPDTLDSLFDDI 76
Query: 61 NTVIMPGITHWQSPHFHAFYPSASSFPSILGELLSTGLGVLSFTW 105
I+PG+THWQSP++ A+YPS SS LGE+LS ++ F+W
Sbjct: 77 QQKIIPGVTHWQSPNYFAYYPSNSSTAGFLGEMLSAAFNIVGFSW 121
>sp|P54770|TYDC3_PAPSO Tyrosine/DOPA decarboxylase 3 OS=Papaver somniferum GN=TYDC3 PE=2
SV=2
Length = 533
Score = 102 bits (253), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 46/105 (43%), Positives = 67/105 (63%)
Query: 1 MNSEEFREFGKAAIDFIADYHDTVRQRQVLPSVQPGYLASLVPGEMPEEGEDWRHIMRDM 60
++ EEFR G IDF+ADY+ V + V V+PGYL +P P E I++D+
Sbjct: 22 LDPEEFRRQGHMIIDFLADYYRDVEKYPVRSQVEPGYLRKRLPETAPYNPESIETILQDV 81
Query: 61 NTVIMPGITHWQSPHFHAFYPSASSFPSILGELLSTGLGVLSFTW 105
+ I+PG+THWQSP+++A++PS+ S LGE+LSTG V+ F W
Sbjct: 82 TSEIIPGLTHWQSPNYYAYFPSSGSVAGFLGEMLSTGFNVVGFNW 126
>sp|P17770|DDC_CATRO Aromatic-L-amino-acid decarboxylase OS=Catharanthus roseus GN=TDC
PE=2 SV=1
Length = 500
Score = 98.2 bits (243), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 46/105 (43%), Positives = 65/105 (61%)
Query: 1 MNSEEFREFGKAAIDFIADYHDTVRQRQVLPSVQPGYLASLVPGEMPEEGEDWRHIMRDM 60
+ +EEFR+ +DFIADY+ V VL V+PGYL +P P E IM+D+
Sbjct: 22 LEAEEFRKQAHRMVDFIADYYKNVETYPVLSEVEPGYLRKRIPETAPYLPEPLDDIMKDI 81
Query: 61 NTVIMPGITHWQSPHFHAFYPSASSFPSILGELLSTGLGVLSFTW 105
I+PG+T+W SP+F+AF+P+ S + LGE+LST L + FTW
Sbjct: 82 QKDIIPGMTNWMSPNFYAFFPATVSSAAFLGEMLSTALNSVGFTW 126
>sp|P34751|DDC_CAEEL Probable aromatic-L-amino-acid decarboxylase OS=Caenorhabditis
elegans GN=hdl-1 PE=2 SV=3
Length = 905
Score = 92.8 bits (229), Expect = 6e-19, Method: Composition-based stats.
Identities = 36/106 (33%), Positives = 68/106 (64%)
Query: 1 MNSEEFREFGKAAIDFIADYHDTVRQRQVLPSVQPGYLASLVPGEMPEEGEDWRHIMRDM 60
M+ ++FR K +D++ +++R + P+++PGYL +L+P + P++ ED I+ D
Sbjct: 343 MSRDQFRNAAKKVVDYLMKQDESIRAARCSPALKPGYLKALLPPKAPQKAEDIDDILEDY 402
Query: 61 NTVIMPGITHWQSPHFHAFYPSASSFPSILGELLSTGLGVLSFTWS 106
+ +I+PG++H P+FH+FYP+ +SF +L +LL +G F W+
Sbjct: 403 HKLIVPGLSHSSHPNFHSFYPAGNSFHCLLADLLGGHIGDAGFYWT 448
>sp|P54771|TYDC5_PAPSO Tyrosine/DOPA decarboxylase 5 OS=Papaver somniferum GN=TYDC5 PE=2
SV=1
Length = 523
Score = 89.4 bits (220), Expect = 6e-18, Method: Composition-based stats.
Identities = 42/105 (40%), Positives = 61/105 (58%), Gaps = 2/105 (1%)
Query: 1 MNSEEFREFGKAAIDFIADYHDTVRQRQVLPSVQPGYLASLVPGEMPEEGEDWRHIMRDM 60
++ +EFR G IDF+ADY+ V+ PG +L P P E I++D+
Sbjct: 20 LDPDEFRRQGHMIIDFLADYYKNVKVSS-RSQANPGSQQTL-PETAPNHSESIETILQDV 77
Query: 61 NTVIMPGITHWQSPHFHAFYPSASSFPSILGELLSTGLGVLSFTW 105
I+PGITHWQSP++ A++PS+ S LGE+LS+G V+ F W
Sbjct: 78 QNDIIPGITHWQSPNYFAYFPSSGSVAGFLGEMLSSGFNVVGFNW 122
>sp|O96569|L2AM_DROLE Alpha-methyldopa hypersensitive protein (Fragment) OS=Drosophila
lebanonensis GN=amd PE=3 SV=1
Length = 439
Score = 50.1 bits (118), Expect = 4e-06, Method: Composition-based stats.
Identities = 15/32 (46%), Positives = 26/32 (81%)
Query: 74 PHFHAFYPSASSFPSILGELLSTGLGVLSFTW 105
PH H +YP++ S+PSI+GE+L++G ++ F+W
Sbjct: 3 PHMHGYYPTSVSYPSIVGEMLASGFSIIGFSW 34
>sp|O96571|DDC_DROLE Aromatic-L-amino-acid decarboxylase (Fragment) OS=Drosophila
lebanonensis GN=Ddc PE=3 SV=1
Length = 403
Score = 41.6 bits (96), Expect = 0.001, Method: Composition-based stats.
Identities = 13/30 (43%), Positives = 24/30 (80%)
Query: 76 FHAFYPSASSFPSILGELLSTGLGVLSFTW 105
FHA++P+A+S+P+I+ ++LS + + FTW
Sbjct: 2 FHAYFPTANSYPAIVADMLSGAIACIGFTW 31
>sp|P81893|L2AM_DROSI Alpha-methyldopa hypersensitive protein (Fragment) OS=Drosophila
simulans GN=amd PE=2 SV=1
Length = 328
Score = 35.8 bits (81), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 22/24 (91%)
Query: 82 SASSFPSILGELLSTGLGVLSFTW 105
+++S+PSI+GE+L++G GV+ F+W
Sbjct: 1 TSTSYPSIVGEMLASGFGVIGFSW 24
>sp|P48370|GYRA_HELPY DNA gyrase subunit A OS=Helicobacter pylori (strain ATCC 700392 /
26695) GN=gyrA PE=3 SV=2
Length = 827
Score = 35.4 bits (80), Expect = 0.11, Method: Composition-based stats.
Identities = 24/87 (27%), Positives = 39/87 (44%), Gaps = 13/87 (14%)
Query: 3 SEE-FREFGKAAIDFIADYHDTVRQRQVLPSVQP------------GYLASLVPGEMPEE 49
SEE R+ K IDF+ +Y DT+++ +LPS P G S+ P M E
Sbjct: 135 SEEILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGANGIAVGMATSIPPHRMDEI 194
Query: 50 GEDWRHIMRDMNTVIMPGITHWQSPHF 76
+ H++ + N + + + P F
Sbjct: 195 IDALVHVLENPNAGLDEILEFVKGPDF 221
>sp|Q9ZLD9|GYRA_HELPJ DNA gyrase subunit A OS=Helicobacter pylori (strain J99) GN=gyrA
PE=3 SV=1
Length = 828
Score = 34.7 bits (78), Expect = 0.18, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Query: 3 SEE-FREFGKAAIDFIADYHDTVRQRQVLPSVQPGYLAS 40
SEE R+ K IDF+ +Y DT+++ +LPS P L +
Sbjct: 135 SEEILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVN 173
>sp|Q07702|GYRA_MYCTU DNA gyrase subunit A OS=Mycobacterium tuberculosis GN=gyrA PE=1
SV=2
Length = 838
Score = 32.0 bits (71), Expect = 1.1, Method: Composition-based stats.
Identities = 15/37 (40%), Positives = 21/37 (56%)
Query: 4 EEFREFGKAAIDFIADYHDTVRQRQVLPSVQPGYLAS 40
E RE + +DFI +Y V++ VLPS P LA+
Sbjct: 140 EMLREIDEETVDFIPNYDGRVQEPTVLPSRFPNLLAN 176
>sp|P48354|GYRA_MYCS2 DNA gyrase subunit A OS=Mycobacterium smegmatis (strain ATCC 700084
/ mc(2)155) GN=gyrA PE=3 SV=1
Length = 842
Score = 32.0 bits (71), Expect = 1.1, Method: Composition-based stats.
Identities = 15/37 (40%), Positives = 21/37 (56%)
Query: 4 EEFREFGKAAIDFIADYHDTVRQRQVLPSVQPGYLAS 40
E RE + +DFI +Y V++ VLPS P LA+
Sbjct: 141 EMLREIDEETVDFIPNYDGRVQEPTVLPSRFPNLLAN 177
>sp|Q6GH50|PARC_STAAR DNA topoisomerase 4 subunit A OS=Staphylococcus aureus (strain
MRSA252) GN=parC PE=3 SV=1
Length = 800
Score = 31.6 bits (70), Expect = 1.7, Method: Composition-based stats.
Identities = 14/40 (35%), Positives = 21/40 (52%)
Query: 1 MNSEEFREFGKAAIDFIADYHDTVRQRQVLPSVQPGYLAS 40
+ E R+ K + FI++Y DT + VLPS P L +
Sbjct: 127 LAEELLRDINKETVSFISNYDDTTLEPMVLPSRFPNLLVN 166
>sp|P47235|GYRA_CAMFE DNA gyrase subunit A OS=Campylobacter fetus GN=gyrA PE=3 SV=1
Length = 862
Score = 31.2 bits (69), Expect = 1.7, Method: Composition-based stats.
Identities = 13/38 (34%), Positives = 21/38 (55%)
Query: 1 MNSEEFREFGKAAIDFIADYHDTVRQRQVLPSVQPGYL 38
+ E R+ K +DFI +Y D++ + VLP+ P L
Sbjct: 134 LAEELLRDLDKDTVDFIPNYDDSLSEPDVLPARVPNLL 171
>sp|Q8NKW8|GYRA_STAAW DNA gyrase subunit A OS=Staphylococcus aureus (strain MW2) GN=gyrA
PE=3 SV=1
Length = 887
Score = 31.2 bits (69), Expect = 1.9, Method: Composition-based stats.
Identities = 16/41 (39%), Positives = 21/41 (51%)
Query: 4 EEFREFGKAAIDFIADYHDTVRQRQVLPSVQPGYLASLVPG 44
E R+ K IDFI +Y R+ VLP+ P LA+ G
Sbjct: 134 ELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASG 174
>sp|P20831|GYRA_STAAU DNA gyrase subunit A OS=Staphylococcus aureus GN=gyrA PE=1 SV=3
Length = 889
Score = 31.2 bits (69), Expect = 1.9, Method: Composition-based stats.
Identities = 16/41 (39%), Positives = 21/41 (51%)
Query: 4 EEFREFGKAAIDFIADYHDTVRQRQVLPSVQPGYLASLVPG 44
E R+ K IDFI +Y R+ VLP+ P LA+ G
Sbjct: 134 ELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASG 174
>sp|Q6GD84|GYRA_STAAS DNA gyrase subunit A OS=Staphylococcus aureus (strain MSSA476)
GN=gyrA PE=3 SV=1
Length = 887
Score = 31.2 bits (69), Expect = 1.9, Method: Composition-based stats.
Identities = 16/41 (39%), Positives = 21/41 (51%)
Query: 4 EEFREFGKAAIDFIADYHDTVRQRQVLPSVQPGYLASLVPG 44
E R+ K IDFI +Y R+ VLP+ P LA+ G
Sbjct: 134 ELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASG 174
>sp|Q6GKT9|GYRA_STAAR DNA gyrase subunit A OS=Staphylococcus aureus (strain MRSA252)
GN=gyrA PE=3 SV=1
Length = 886
Score = 31.2 bits (69), Expect = 1.9, Method: Composition-based stats.
Identities = 16/41 (39%), Positives = 21/41 (51%)
Query: 4 EEFREFGKAAIDFIADYHDTVRQRQVLPSVQPGYLASLVPG 44
E R+ K IDFI +Y R+ VLP+ P LA+ G
Sbjct: 134 ELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASG 174
>sp|Q99XG5|GYRA_STAAN DNA gyrase subunit A OS=Staphylococcus aureus (strain N315) GN=gyrA
PE=1 SV=1
Length = 889
Score = 31.2 bits (69), Expect = 1.9, Method: Composition-based stats.
Identities = 16/41 (39%), Positives = 21/41 (51%)
Query: 4 EEFREFGKAAIDFIADYHDTVRQRQVLPSVQPGYLASLVPG 44
E R+ K IDFI +Y R+ VLP+ P LA+ G
Sbjct: 134 ELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASG 174
>sp|Q932M0|GYRA_STAAM DNA gyrase subunit A OS=Staphylococcus aureus (strain Mu50 / ATCC
700699) GN=gyrA PE=1 SV=1
Length = 889
Score = 31.2 bits (69), Expect = 1.9, Method: Composition-based stats.
Identities = 16/41 (39%), Positives = 21/41 (51%)
Query: 4 EEFREFGKAAIDFIADYHDTVRQRQVLPSVQPGYLASLVPG 44
E R+ K IDFI +Y R+ VLP+ P LA+ G
Sbjct: 134 ELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASG 174
>sp|Q5HJZ0|GYRA_STAAC DNA gyrase subunit A OS=Staphylococcus aureus (strain COL) GN=gyrA
PE=3 SV=1
Length = 887
Score = 31.2 bits (69), Expect = 1.9, Method: Composition-based stats.
Identities = 16/41 (39%), Positives = 21/41 (51%)
Query: 4 EEFREFGKAAIDFIADYHDTVRQRQVLPSVQPGYLASLVPG 44
E R+ K IDFI +Y R+ VLP+ P LA+ G
Sbjct: 134 ELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASG 174
>sp|Q2G2Q0|GYRA_STAA8 DNA gyrase subunit A OS=Staphylococcus aureus (strain NCTC 8325)
GN=gyrA PE=1 SV=1
Length = 887
Score = 31.2 bits (69), Expect = 1.9, Method: Composition-based stats.
Identities = 16/41 (39%), Positives = 21/41 (51%)
Query: 4 EEFREFGKAAIDFIADYHDTVRQRQVLPSVQPGYLASLVPG 44
E R+ K IDFI +Y R+ VLP+ P LA+ G
Sbjct: 134 ELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASG 174
>sp|Q2FKQ0|GYRA_STAA3 DNA gyrase subunit A OS=Staphylococcus aureus (strain USA300)
GN=gyrA PE=3 SV=1
Length = 887
Score = 31.2 bits (69), Expect = 1.9, Method: Composition-based stats.
Identities = 16/41 (39%), Positives = 21/41 (51%)
Query: 4 EEFREFGKAAIDFIADYHDTVRQRQVLPSVQPGYLASLVPG 44
E R+ K IDFI +Y R+ VLP+ P LA+ G
Sbjct: 134 ELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASG 174
>sp|Q57532|GYRA_MYCLE DNA gyrase subunit A OS=Mycobacterium leprae (strain TN) GN=gyrA
PE=3 SV=2
Length = 1273
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 22/37 (59%)
Query: 4 EEFREFGKAAIDFIADYHDTVRQRQVLPSVQPGYLAS 40
E RE + +DFI++Y V++ VLPS P LA+
Sbjct: 561 EMLREIDEETVDFISNYDGRVQEPMVLPSRFPNLLAN 597
>sp|P47719|GYRA_MYCGA DNA gyrase subunit A OS=Mycoplasma gallisepticum (strain R(low /
passage 15 / clone 2)) GN=gyrA PE=3 SV=2
Length = 846
Score = 31.2 bits (69), Expect = 2.2, Method: Composition-based stats.
Identities = 30/119 (25%), Positives = 52/119 (43%), Gaps = 24/119 (20%)
Query: 1 MNSEEFREFGKAAIDFIADYHDTVRQRQVLPSVQPGYLA------------SLVPGEMPE 48
+++E R K +DF+ +Y + ++ VLPS+ P LA ++ P + E
Sbjct: 140 ISAEMLRNIDKDTVDFVDNYDASEQEPIVLPSLFPNLLANGSSGIAVGMATNIPPHNLSE 199
Query: 49 EGEDWRHIMRDMNTVIMPGITHWQSPHFHAFYPSASSFPSILG-----ELLSTGLGVLS 102
+H++ + N I + P F P+A+ ILG E +TG G +S
Sbjct: 200 LIGGIKHLLVNENATIEELKEFIKGPDF----PTAA---EILGETGINEYFNTGRGSVS 251
>sp|P72065|GYRA_MYCXE DNA gyrase subunit A (Fragment) OS=Mycobacterium xenopi GN=gyrA
PE=1 SV=2
Length = 327
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 21/37 (56%)
Query: 4 EEFREFGKAAIDFIADYHDTVRQRQVLPSVQPGYLAS 40
E RE + +DFI +Y V++ VLPS P LA+
Sbjct: 274 EMLREIDEETVDFIPNYDGRVQEPTVLPSRFPNLLAN 310
>sp|Q8NWU8|PARC_STAAW DNA topoisomerase 4 subunit A OS=Staphylococcus aureus (strain MW2)
GN=parC PE=3 SV=1
Length = 800
Score = 30.4 bits (67), Expect = 2.9, Method: Composition-based stats.
Identities = 14/40 (35%), Positives = 20/40 (50%)
Query: 1 MNSEEFREFGKAAIDFIADYHDTVRQRQVLPSVQPGYLAS 40
+ E R+ K + FI +Y DT + VLPS P L +
Sbjct: 127 LAEELLRDINKETVSFIPNYDDTTLEPMVLPSRFPNLLVN 166
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.136 0.434
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 45,170,358
Number of Sequences: 539616
Number of extensions: 1739151
Number of successful extensions: 4171
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 4099
Number of HSP's gapped (non-prelim): 76
length of query: 111
length of database: 191,569,459
effective HSP length: 79
effective length of query: 32
effective length of database: 148,939,795
effective search space: 4766073440
effective search space used: 4766073440
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)