Query psy3051
Match_columns 111
No_of_seqs 148 out of 1031
Neff 8.7
Searched_HMMs 46136
Date Sat Aug 17 00:26:51 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3051.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/3051hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0628|consensus 100.0 2.2E-29 4.7E-34 186.0 10.2 110 1-110 1-110 (511)
2 PLN02590 probable tyrosine dec 100.0 1.8E-28 4E-33 187.4 12.3 110 1-110 54-167 (539)
3 PLN02880 tyrosine decarboxylas 99.9 3.1E-27 6.8E-32 179.4 12.3 111 1-111 10-120 (490)
4 KOG0629|consensus 99.8 2.1E-18 4.6E-23 127.3 8.0 106 4-110 31-138 (510)
5 TIGR03799 NOD_PanD_pyr putativ 99.7 4.2E-17 9E-22 125.0 9.2 100 5-110 23-126 (522)
6 PF00282 Pyridoxal_deC: Pyrido 99.7 4.7E-18 1E-22 125.7 2.4 76 35-110 1-76 (373)
7 TIGR03811 tyr_de_CO2_Ent tyros 99.7 6.1E-16 1.3E-20 120.1 11.0 105 2-111 15-121 (608)
8 COG0076 GadB Glutamate decarbo 98.7 3.6E-08 7.7E-13 75.1 7.4 95 17-111 4-99 (460)
9 TIGR01788 Glu-decarb-GAD gluta 98.5 3E-07 6.5E-12 69.6 6.1 64 43-110 14-77 (431)
10 PLN02263 serine decarboxylase 97.2 0.00062 1.3E-08 52.3 4.5 51 53-109 75-126 (470)
11 PRK00451 glycine dehydrogenase 96.4 0.0051 1.1E-07 46.5 4.3 68 34-103 31-104 (447)
12 PRK02769 histidine decarboxyla 91.1 0.3 6.5E-06 36.6 3.5 49 54-109 8-57 (380)
13 PF02686 Glu-tRNAGln: Glu-tRNA 78.5 3.2 7E-05 23.3 2.9 59 2-61 2-63 (72)
14 PRK12821 aspartyl/glutamyl-tRN 77.6 11 0.00023 29.4 6.1 60 2-62 406-469 (477)
15 TIGR00135 gatC glutamyl-tRNA(G 77.3 13 0.00027 22.1 5.9 49 14-62 29-80 (93)
16 TIGR01827 gatC_rel Asp-tRNA(As 71.3 17 0.00037 20.9 4.9 52 8-61 4-57 (73)
17 COG0721 GatC Asp-tRNAAsn/Glu-t 68.7 23 0.00051 21.4 5.7 49 14-62 31-82 (96)
18 COG4289 Uncharacterized protei 66.8 11 0.00024 28.6 4.0 48 58-106 93-140 (458)
19 PF11149 DUF2924: Protein of u 65.9 4.5 9.8E-05 26.2 1.6 12 68-79 124-135 (136)
20 PRK00034 gatC aspartyl/glutamy 55.9 41 0.00088 19.9 5.9 50 13-62 30-82 (95)
21 COG4867 Uncharacterized protei 54.3 45 0.00097 26.2 5.4 68 6-80 179-246 (652)
22 COG2406 Protein distantly rela 52.1 68 0.0015 21.3 5.5 19 44-62 96-114 (172)
23 PF06956 RtcR: Regulator of RN 51.2 58 0.0012 22.2 5.0 41 48-88 79-119 (183)
24 COG2071 Predicted glutamine am 45.4 12 0.00026 26.6 1.2 37 48-85 49-85 (243)
25 cd00503 Frataxin Frataxin is a 43.9 49 0.0011 20.3 3.6 25 1-25 1-25 (105)
26 PRK13456 DNA protection protei 42.6 1.1E+02 0.0024 21.0 6.4 43 16-61 71-116 (186)
27 PRK01379 cyaY frataxin-like pr 42.1 53 0.0011 20.2 3.5 24 1-24 1-24 (103)
28 PRK12820 bifunctional aspartyl 41.7 88 0.0019 25.9 5.6 59 2-61 629-692 (706)
29 PF01491 Frataxin_Cyay: Fratax 39.4 47 0.001 20.5 3.1 25 1-25 1-25 (109)
30 PRK00446 cyaY frataxin-like pr 39.0 62 0.0013 19.9 3.5 24 1-24 1-24 (105)
31 PF02762 Cbl_N3: CBL proto-onc 38.1 14 0.0003 21.7 0.5 10 72-81 1-10 (86)
32 PF05186 Dpy-30: Dpy-30 motif; 37.2 31 0.00068 17.5 1.7 14 83-96 26-39 (42)
33 KOG3413|consensus 36.3 38 0.00082 22.4 2.3 25 2-26 43-67 (156)
34 PF09106 SelB-wing_2: Elongati 36.2 72 0.0016 17.0 3.9 44 14-62 2-46 (59)
35 COG0605 SodA Superoxide dismut 36.1 41 0.00088 23.4 2.6 52 49-100 52-110 (204)
36 TIGR03812 tyr_de_CO2_Arch tyro 35.6 62 0.0013 23.5 3.7 34 54-88 3-36 (373)
37 PF05391 Lsm_interact: Lsm int 32.1 42 0.00091 14.6 1.4 10 1-10 10-19 (21)
38 PRK12362 germination protease; 31.9 32 0.0007 25.5 1.7 69 8-76 236-316 (318)
39 PF10685 KGG: Stress-induced b 31.7 55 0.0012 14.5 1.8 12 1-12 5-16 (23)
40 PLN03032 serine decarboxylase; 30.5 2E+02 0.0044 21.6 5.8 86 6-92 4-102 (374)
41 PF10022 DUF2264: Uncharacteri 28.9 2.6E+02 0.0056 21.1 8.5 84 2-86 2-107 (361)
42 PRK06474 hypothetical protein; 28.4 1.1E+02 0.0023 20.5 3.6 23 1-23 136-158 (178)
43 TIGR01750 fabZ beta-hydroxyacy 28.2 82 0.0018 19.6 2.9 34 65-98 32-66 (140)
44 COG0764 FabA 3-hydroxymyristoy 27.6 44 0.00095 21.9 1.6 26 66-91 38-63 (147)
45 cd03063 TRX_Fd_FDH_beta TRX-li 26.9 75 0.0016 19.1 2.4 26 52-80 66-91 (92)
46 TIGR03044 PS_II_psb27 photosys 26.7 97 0.0021 20.1 3.0 36 5-40 60-96 (135)
47 cd08801 Death_UNC5D Death doma 26.6 34 0.00074 20.8 0.9 26 74-100 33-58 (98)
48 PF00205 TPP_enzyme_M: Thiamin 26.3 47 0.001 20.7 1.6 22 66-87 49-70 (137)
49 COG3752 Steroid 5-alpha reduct 25.0 25 0.00054 25.4 0.1 30 71-107 193-222 (272)
50 TIGR02574 stabl_TIGR02574 puta 24.2 1.2E+02 0.0026 16.6 2.7 29 34-62 32-62 (63)
51 KOG0994|consensus 24.1 1.9E+02 0.004 26.0 4.8 50 8-64 1471-1524(1758)
52 PHA02515 hypothetical protein; 23.5 99 0.0021 23.8 2.9 17 26-42 130-146 (508)
53 PRK14981 DNA-directed RNA poly 23.4 88 0.0019 19.4 2.3 30 33-62 79-109 (112)
54 COG0339 Dcp Zn-dependent oligo 22.9 1E+02 0.0023 25.4 3.1 41 47-87 570-612 (683)
55 PF05678 VQ: VQ motif; InterP 22.4 96 0.0021 14.7 1.8 12 2-13 11-22 (31)
56 cd08537 SAM_PNT-ESE-1-like Ste 22.2 87 0.0019 18.3 2.0 25 1-25 51-75 (78)
57 TIGR03398 plc_access_R phospho 21.6 2.4E+02 0.0051 18.2 5.7 68 1-72 15-82 (141)
58 PF12010 DUF3502: Domain of un 21.5 91 0.002 19.8 2.2 57 2-64 70-126 (134)
59 PLN00061 photosystem II protei 21.5 2.2E+02 0.0047 18.9 3.9 28 2-29 77-104 (150)
60 PF12162 STAT1_TAZ2bind: STAT1 21.3 98 0.0021 13.7 2.0 10 1-10 10-19 (23)
61 COG0783 Dps DNA-binding ferrit 20.7 2.7E+02 0.0057 18.4 7.4 55 4-62 54-109 (156)
62 PLN03032 serine decarboxylase; 20.7 1.5E+02 0.0032 22.4 3.4 12 89-100 70-81 (374)
63 cd01043 DPS DPS protein, ferri 20.2 2.3E+02 0.005 17.6 7.6 49 11-62 44-93 (139)
No 1
>KOG0628|consensus
Probab=99.96 E-value=2.2e-29 Score=186.02 Aligned_cols=110 Identities=54% Similarity=1.126 Sum_probs=108.8
Q ss_pred CCHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCChhHHhhcCCCCCCCCCcCHHHHHHHHHHhhcCCCCccCCccccccc
Q psy3051 1 MNSEEFREFGKAAIDFIADYHDTVRQRQVLPSVQPGYLASLVPGEMPEEGEDWRHIMRDMNTVIMPGITHWQSPHFHAFY 80 (111)
Q Consensus 1 ~~~~~~~~~~~~~~~~i~~~~~~~~~~pv~~~~~p~~l~~~~~~~~p~~g~~~~~~l~~~~~~v~~~~~~~~hPrf~~~v 80 (111)
||.++||+.+.+++|+|+||++++++++|.|.++|+.++++++...|+.|+++++|++++.+.|+|+.+||+||+||+|+
T Consensus 1 Md~~efR~~gk~mVD~IadY~e~ir~r~v~P~v~PGYl~~llP~~aPe~pE~~~~Il~D~ekiI~PGitHw~hP~fhAyf 80 (511)
T KOG0628|consen 1 MDSEEFREEGKEMVDYIADYLENIRKRRVLPDVKPGYLRDLLPSKAPEKPESWEDILGDLEKIIMPGITHWQHPHFHAYF 80 (511)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCcchhhhhCCCCCCCChhhHHHHHHHHHHHccCCCcccCCCceeeEc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHhhhCcCCcccccCCC
Q psy3051 81 PSASSFPSILGELLSTGLGVLSFTWSPHVG 110 (111)
Q Consensus 81 ~~~~~~~s~lad~l~sa~N~~~~~~~~spg 110 (111)
|++.++.|++||+|+++++..+++|.+||+
T Consensus 81 pa~~s~~siladmLs~~i~~vGFtW~ssPa 110 (511)
T KOG0628|consen 81 PAGNSYPSILADMLSGGIGCVGFTWASSPA 110 (511)
T ss_pred cCccchHHHHHHHHhcccccccceeecCcc
Confidence 999999999999999999999999999996
No 2
>PLN02590 probable tyrosine decarboxylase
Probab=99.96 E-value=1.8e-28 Score=187.43 Aligned_cols=110 Identities=45% Similarity=0.865 Sum_probs=107.0
Q ss_pred CCHHHHHHHHHHHHHHHHHHHhhccC----CCCCCCCChhHHhhcCCCCCCCCCcCHHHHHHHHHHhhcCCCCccCCccc
Q psy3051 1 MNSEEFREFGKAAIDFIADYHDTVRQ----RQVLPSVQPGYLASLVPGEMPEEGEDWRHIMRDMNTVIMPGITHWQSPHF 76 (111)
Q Consensus 1 ~~~~~~~~~~~~~~~~i~~~~~~~~~----~pv~~~~~p~~l~~~~~~~~p~~g~~~~~~l~~~~~~v~~~~~~~~hPrf 76 (111)
||.++||+.++++++++.+|++++.+ +||.+.+.|++++++++.++|++|.+++++++++.+.|+++.++++||||
T Consensus 54 m~~~~~r~~~~~~~d~i~~~~~~~~~~~~~~pv~~~~~p~~l~~~l~~~~P~~g~~~~~il~~~~~~i~p~~~~~~hP~f 133 (539)
T PLN02590 54 MDSELLREQGHIMVDFIADYYKNLQDSPQDFPVLSQVQPGYLRDMLPDSAPERPESLKELLDDVSKKIMPGITHWQSPSY 133 (539)
T ss_pred CCHHHHHHHHHHHHHHHHHHHhhccccccCCCCCCCCChHHHHHhcCCCCCCCCCCHHHHHHHHHHHHhccCCcCCCCCe
Confidence 78999999999999999999999886 79999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCCHHHHHHHHHHhhhCcCCcccccCCC
Q psy3051 77 HAFYPSASSFPSILGELLSTGLGVLSFTWSPHVG 110 (111)
Q Consensus 77 ~~~v~~~~~~~s~lad~l~sa~N~~~~~~~~spg 110 (111)
|||+++++++++++||||++++|+++++|++||+
T Consensus 134 ~a~~~~~~~~~~~lgd~l~sa~n~~~~~~~~sPa 167 (539)
T PLN02590 134 FAYYASSTSVAGFLGEMLNAGLSVVGFTWLTSPA 167 (539)
T ss_pred eEeccCCCcHHHHHHHHHHHhcccccCCcccCch
Confidence 9999999999999999999999999999999997
No 3
>PLN02880 tyrosine decarboxylase
Probab=99.95 E-value=3.1e-27 Score=179.41 Aligned_cols=111 Identities=43% Similarity=0.888 Sum_probs=108.0
Q ss_pred CCHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCChhHHhhcCCCCCCCCCcCHHHHHHHHHHhhcCCCCccCCccccccc
Q psy3051 1 MNSEEFREFGKAAIDFIADYHDTVRQRQVLPSVQPGYLASLVPGEMPEEGEDWRHIMRDMNTVIMPGITHWQSPHFHAFY 80 (111)
Q Consensus 1 ~~~~~~~~~~~~~~~~i~~~~~~~~~~pv~~~~~p~~l~~~~~~~~p~~g~~~~~~l~~~~~~v~~~~~~~~hPrf~~~v 80 (111)
||.++||+.++++++++.+|++++.++||.+...|+++++.++..+|++|.+++++++++.+.|++++++++|||||||+
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~~~~p~~l~~~~~~~~p~~~~~~~~~l~~~~~~i~~~~~~~~hP~f~~~~ 89 (490)
T PLN02880 10 MDAEQLRECGHRMVDFIADYYKSIENFPVLSQVQPGYLRELLPDSAPNQPETLDQVLDDVQAKILPGVTHWQSPNYFAYY 89 (490)
T ss_pred CCHHHHHHHHHHHHHHHHHHHhccccCCCCCCCCHHHHHHhccccCCCCCCCHHHHHHHHHHHHhcCCCCCCCCCeeEec
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHhhhCcCCcccccCCCC
Q psy3051 81 PSASSFPSILGELLSTGLGVLSFTWSPHVGT 111 (111)
Q Consensus 81 ~~~~~~~s~lad~l~sa~N~~~~~~~~spg~ 111 (111)
++++++++++||+|++++|+++++|++||+.
T Consensus 90 ~~~~~~~~~lad~l~~~~n~~~~~~~~sp~~ 120 (490)
T PLN02880 90 PSNSSVAGFLGEMLSAGLNIVGFSWITSPAA 120 (490)
T ss_pred cCCCcHHHHHHHHHHHhhccCCcccccCccc
Confidence 9999999999999999999999999999973
No 4
>KOG0629|consensus
Probab=99.76 E-value=2.1e-18 Score=127.27 Aligned_cols=106 Identities=22% Similarity=0.241 Sum_probs=97.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhcc--CCCCCCCCChhHHhhcCCCCCCCCCcCHHHHHHHHHHhhcCCCCccCCcccccccc
Q psy3051 4 EEFREFGKAAIDFIADYHDTVR--QRQVLPSVQPGYLASLVPGEMPEEGEDWRHIMRDMNTVIMPGITHWQSPHFHAFYP 81 (111)
Q Consensus 4 ~~~~~~~~~~~~~i~~~~~~~~--~~pv~~~~~p~~l~~~~~~~~p~~g~~~~~~l~~~~~~v~~~~~~~~hPrf~~~v~ 81 (111)
+..+.++.++++.+.+|...-. +.+|..+..|++|+++++..+|+++.++++++.++++ .+.|+++|+|||||+++.
T Consensus 31 ~~te~fl~~v~~~ll~~v~~~~dr~~kv~~fhhP~~L~~l~nlel~~~~esl~qil~~cr~-tl~y~vKTgHprffNQl~ 109 (510)
T KOG0629|consen 31 EVTEPFLRAVVDILLDYVKKGFDRSQKVLDFHHPDELKELFNLELRDQPESLAQILEDCRD-TLKYSVKTGHPRFFNQLS 109 (510)
T ss_pred hhhHhhhHHHHHHHHHhhccCCcccceeecccChHHHHHHhCcccCCChhhHHHHHHHHHH-HHHhhhccCCCcchhhhc
Confidence 3457888999999999966543 3589999999999999999999999999999999997 789999999999999999
Q ss_pred CCCCHHHHHHHHHHhhhCcCCcccccCCC
Q psy3051 82 SASSFPSILGELLSTGLGVLSFTWSPHVG 110 (111)
Q Consensus 82 ~~~~~~s~lad~l~sa~N~~~~~~~~spg 110 (111)
++-++.|++|+||+++.|.++++|+.+|+
T Consensus 110 ~glD~~~Lag~wlT~t~Ntn~~TYEiAPv 138 (510)
T KOG0629|consen 110 SGLDPIGLAGEWLTSTANTNMFTYEIAPV 138 (510)
T ss_pred cCCCHHHHHHHHHHhccCCCCceEEecce
Confidence 99999999999999999999999999996
No 5
>TIGR03799 NOD_PanD_pyr putative pyridoxal-dependent aspartate 1-decarboxylase. This enzyme is proposed here to be a form of aspartate 1-decarboxylase, pyridoxal-dependent, that represents a non-orthologous displacement to the more widely distributed pyruvoyl-dependent form (TIGR00223). Aspartate 1-decarboxylase makes beta-alanine, used usually in pathothenate biosynthesis, by decarboxylation from asparatate. A number of species with the PanB and PanC enzymes, however, lack PanD. This protein family occurs in a number of Proteobacteria that lack PanD. This enzyme family appears to be a pyridoxal-dependent enzyme (see pfam00282). The family was identified by Partial Phylogenetic Profiling; members in Geobacter sulfurreducens, G. metallireducens, and Pseudoalteromonas atlantica are clustered with the genes for PanB and PanC. We suggest the gene symbol panP (panthothenate biosynthesis enzyme, Pyridoxal-dependent).
Probab=99.71 E-value=4.2e-17 Score=125.00 Aligned_cols=100 Identities=16% Similarity=0.124 Sum_probs=78.6
Q ss_pred HHHHHHHHHHHHHHHHHhh--ccCCCCCCCCChhHHhhc-CCCCCCCCCcCHHHHHHHHHHhhcCCCCccCCcccccccc
Q psy3051 5 EFREFGKAAIDFIADYHDT--VRQRQVLPSVQPGYLASL-VPGEMPEEGEDWRHIMRDMNTVIMPGITHWQSPHFHAFYP 81 (111)
Q Consensus 5 ~~~~~~~~~~~~i~~~~~~--~~~~pv~~~~~p~~l~~~-~~~~~p~~g~~~~~~l~~~~~~v~~~~~~~~hPrf~~~v~ 81 (111)
+++++.+++.+.+++++.+ ....++.+ +++.. ....+|++|.+.+++++++.+.+++++++|+|||||||++
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~hP~f~g~~~ 97 (522)
T TIGR03799 23 TLGRIEQKISQNLAGFLQEHIVAIEKPLS-----EIEKDFSSAEIPEQPTFVSEHTQFLLDKLVAHSVHTASPSFIGHMT 97 (522)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhccCCCch-----hhhhcccccCCCCCCCChHHHHHHHHHHHHcCCCCCCCCCeEEecc
Confidence 4566666666666666665 33334433 34433 3568999999999999999999999999999999999999
Q ss_pred CC-CCHHHHHHHHHHhhhCcCCcccccCCC
Q psy3051 82 SA-SSFPSILGELLSTGLGVLSFTWSPHVG 110 (111)
Q Consensus 82 ~~-~~~~s~lad~l~sa~N~~~~~~~~spg 110 (111)
++ +.+.+.++| |++++|+|+.+|++||+
T Consensus 98 ~~~p~~~~~l~~-l~~~lN~n~~~~~~spa 126 (522)
T TIGR03799 98 SALPYFMLPLSK-LMVALNQNLVKIETSKA 126 (522)
T ss_pred CCCchHHHHHHH-HHHHhcCCcceeecCcc
Confidence 97 555566888 78899999999999997
No 6
>PF00282 Pyridoxal_deC: Pyridoxal-dependent decarboxylase conserved domain; InterPro: IPR002129 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent decarboxylases share regions of sequence similarity, particularly in the vicinity of a conserved lysine residue, which provides the attachment site for the pyridoxal-phosphate (PLP) group [, ]. Among these enzymes are aromatic-L-amino-acid decarboxylase (L-dopa decarboxylase or tryptophan decarboxylase), which catalyses the decarboxylation of tryptophan to tryptamine []; tyrosine decarboxylase, which converts tyrosine into tyramine; and histidine decarboxylase, which catalyses the decarboxylation of histidine to histamine []. These enzymes belong to the group II decarboxylases [, ].; GO: 0016831 carboxy-lyase activity, 0030170 pyridoxal phosphate binding, 0019752 carboxylic acid metabolic process; PDB: 3MC6_A 1XEY_A 1ES0_B 2OKK_A 2JIS_B 2QMA_A 3MAF_B 3MAD_B 3MAU_A 3MBB_A ....
Probab=99.70 E-value=4.7e-18 Score=125.69 Aligned_cols=76 Identities=38% Similarity=0.812 Sum_probs=68.4
Q ss_pred hhHHhhcCCCCCCCCCcCHHHHHHHHHHhhcCCCCccCCccccccccCCCCHHHHHHHHHHhhhCcCCcccccCCC
Q psy3051 35 PGYLASLVPGEMPEEGEDWRHIMRDMNTVIMPGITHWQSPHFHAFYPSASSFPSILGELLSTGLGVLSFTWSPHVG 110 (111)
Q Consensus 35 p~~l~~~~~~~~p~~g~~~~~~l~~~~~~v~~~~~~~~hPrf~~~v~~~~~~~s~lad~l~sa~N~~~~~~~~spg 110 (111)
|+++++.++..+|++|.+++++++++.+.+.++..+++|||||||+++++++++++||+|++++|+|+..|+.||+
T Consensus 1 P~~l~~~~~~~lp~~~~~~~~vl~~~~~~l~~~~~~~~~P~~~~~~~~~~~~~~i~~~~l~~~~n~n~~~~~~~P~ 76 (373)
T PF00282_consen 1 PGELRARLDEELPEEGESLEEVLKDLREILAPGVTHWHHPRFFGFVPGGPSPASILADLLASALNQNGFTWEASPA 76 (373)
T ss_dssp TTSSGGGCHCCHHSSHH-HHHHHHHHHHHTHGCS-TTTSTTBESSSHT--CHHHHHHHHHHHHHT-BTTSTTTSHH
T ss_pred ChhhhhcCccccccCCCCHHHHHHHHHHHhhccCCCCCChhHhhhccCCccHHHHHHHHHHhhhcccccccccccc
Confidence 6789999999999999999999999999999999999999999999999999999999999999999999999984
No 7
>TIGR03811 tyr_de_CO2_Ent tyrosine decarboxylase, Enterococcus type. This model represents tyrosine decarboxylases in the family of the Enterococcus faecalis enzyme Tdc. These enzymes often are encoded next to tyrosine/tyramine antiporter, together comprising a system in which tyrosine decarboxylation can protect against exposure to acid conditions. This clade differs from the archaeal tyrosine decarboxylases associated with methanofuran biosynthesis.
Probab=99.67 E-value=6.1e-16 Score=120.14 Aligned_cols=105 Identities=11% Similarity=0.243 Sum_probs=89.4
Q ss_pred CHHHHHHHHHHHHHHHHHHHhhccC-CCCCCCCChhHHhhcCCCCCCCCCcCHHHHHHHHHHhhcCCCCccCCc-ccccc
Q psy3051 2 NSEEFREFGKAAIDFIADYHDTVRQ-RQVLPSVQPGYLASLVPGEMPEEGEDWRHIMRDMNTVIMPGITHWQSP-HFHAF 79 (111)
Q Consensus 2 ~~~~~~~~~~~~~~~i~~~~~~~~~-~pv~~~~~p~~l~~~~~~~~p~~g~~~~~~l~~~~~~v~~~~~~~~hP-rf~~~ 79 (111)
+.+.||+++.++++.+.++.++... .| +..+++++++ ....+...+++++++++.+.+.+++++++|| ||+||
T Consensus 15 n~~~~~~~~~~~~~~~~~~r~~~~p~d~--~~~~~~~~~~---~~~~~~~~~~~~~l~~l~~~l~~~sv~~~~P~ry~gh 89 (608)
T TIGR03811 15 NGQLYKDLLNKLVDEHLGWRQNYMPQDK--PVISPQERTS---KSFTKTVNNMKDVLDELSSRLRTESVPWHSAGRYWGH 89 (608)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhcCCCCC--CCCCHHHhcc---cccccCccCHHHHHHHHHHHHhcCCCCCCCccceEEE
Confidence 3567999999999999998877321 11 4556777666 2556667789999999999899999999999 99999
Q ss_pred ccCCCCHHHHHHHHHHhhhCcCCcccccCCCC
Q psy3051 80 YPSASSFPSILGELLSTGLGVLSFTWSPHVGT 111 (111)
Q Consensus 80 v~~~~~~~s~lad~l~sa~N~~~~~~~~spg~ 111 (111)
++++++++|++||++++++|+|+.+|++||++
T Consensus 90 m~~~~~~paila~~~a~~~N~n~~~~e~SP~~ 121 (608)
T TIGR03811 90 MNSETLMPAILAYNYAMLWNGNNVAYESSPAT 121 (608)
T ss_pred CcCCCCHHHHHHHHHHHHhCCCCCccccCchH
Confidence 99999999999999999999999999999985
No 8
>COG0076 GadB Glutamate decarboxylase and related PLP-dependent proteins [Amino acid transport and metabolism]
Probab=98.75 E-value=3.6e-08 Score=75.09 Aligned_cols=95 Identities=17% Similarity=0.115 Sum_probs=73.5
Q ss_pred HHHHHhhccCCCCCCCCChhHHhhcCCCCCCCCCcCHHHHHHHHHHh-hcCCCCccCCccccccccCCCCHHHHHHHHHH
Q psy3051 17 IADYHDTVRQRQVLPSVQPGYLASLVPGEMPEEGEDWRHIMRDMNTV-IMPGITHWQSPHFHAFYPSASSFPSILGELLS 95 (111)
Q Consensus 17 i~~~~~~~~~~pv~~~~~p~~l~~~~~~~~p~~g~~~~~~l~~~~~~-v~~~~~~~~hPrf~~~v~~~~~~~s~lad~l~ 95 (111)
+.++......+.+.....+-.-.......+|+.|.+.++++.++... +.+...+..||+++.|..+++.+..+++++++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~g~p~~~v~~~l~~~~~~d~~~~~~~p~~~~~~~~~~~~~~~a~~~~~ 83 (460)
T COG0076 4 LIDKDMLNSKRYSGDSLSPLFGALSDSRMAPEKGEPLEEVLDELAELLIKDELYLDGHPRANLAGFCPTRVPPVAAELLV 83 (460)
T ss_pred HHHHHHhhccCCCccccccchhhhhhhccCCccCCchhhHHHHHHHHhhcccccccCCcceEEEccCCCCCHHHHHHHHH
Confidence 34444444444433433443333444568899999999999999988 55556666799999999999999999999999
Q ss_pred hhhCcCCcccccCCCC
Q psy3051 96 TGLGVLSFTWSPHVGT 111 (111)
Q Consensus 96 sa~N~~~~~~~~spg~ 111 (111)
.++|+|++.|..+|++
T Consensus 84 ~~~~~nl~d~~~~p~a 99 (460)
T COG0076 84 SALNKNLGDPDESPAA 99 (460)
T ss_pred HHHhhcCCCcccChhH
Confidence 9999999999999974
No 9
>TIGR01788 Glu-decarb-GAD glutamate decarboxylase. This model represents the pyridoxal phosphate-dependent glutamate (alpha) decarboxylase found in bacteria (low and hi-GC gram positive, proteobacteria and cyanobacteria), plants, fungi and at least one archaon (Methanosarcina). The product of the enzyme is gamma-aminobutyrate (GABA).
Probab=98.49 E-value=3e-07 Score=69.59 Aligned_cols=64 Identities=9% Similarity=-0.008 Sum_probs=56.9
Q ss_pred CCCCCCCCcCHHHHHHHHHHhhcCCCCccCCccccccccCCCCHHHHHHHHHHhhhCcCCcccccCCC
Q psy3051 43 PGEMPEEGEDWRHIMRDMNTVIMPGITHWQSPHFHAFYPSASSFPSILGELLSTGLGVLSFTWSPHVG 110 (111)
Q Consensus 43 ~~~~p~~g~~~~~~l~~~~~~v~~~~~~~~hPrf~~~v~~~~~~~s~lad~l~sa~N~~~~~~~~spg 110 (111)
..++|++|.+.+++++++...+ |..+..||||++|+.++..+. +.|++.+++|++.+.|..+|+
T Consensus 14 ~~~~p~~~~~~~~~~~~~~~~i--yld~~a~~~~~~~~tt~~~p~--~~~~~~~~l~~~~~np~s~~~ 77 (431)
T TIGR01788 14 KYRMPEEEMPPDAAYQLIHDEL--SLDGNPRLNLATFVTTWMEPE--ARKLMDETINKNMIDKDEYPQ 77 (431)
T ss_pred cccCCCCCCCHHHHHHHHHHHh--hhcCCcceeeeeeeCCCCCHH--HHHHHHHHHhcCCCCcccCcc
Confidence 4589999999999999999865 457888999999999999888 699999999999999988775
No 10
>PLN02263 serine decarboxylase
Probab=97.18 E-value=0.00062 Score=52.30 Aligned_cols=51 Identities=14% Similarity=0.232 Sum_probs=46.7
Q ss_pred HHHHHHHHHHhhcCCCCccCCccccccccCCCCH-HHHHHHHHHhhhCcCCcccccCC
Q psy3051 53 WRHIMRDMNTVIMPGITHWQSPHFHAFYPSASSF-PSILGELLSTGLGVLSFTWSPHV 109 (111)
Q Consensus 53 ~~~~l~~~~~~v~~~~~~~~hPrf~~~v~~~~~~-~s~lad~l~sa~N~~~~~~~~sp 109 (111)
.+++|+++.+.++++..+ |||| |.+.++ ++.++++|...+|+.++.|..||
T Consensus 75 ~~~~l~~~~~~~~~~~~~-----~~gY-p~n~~~d~s~l~~~l~~~~nN~Gdp~~~s~ 126 (470)
T PLN02263 75 MASVLARYRKTLVERTKH-----HLGY-PYNLDFDYGALGQLQHFSINNLGDPFIESN 126 (470)
T ss_pred HHHHHHHHHHHHHhcccc-----eeCC-CCcccCChhhHHHHHHhhccCCCCccccCC
Confidence 689999999999886665 9999 999999 99999999999999999999987
No 11
>PRK00451 glycine dehydrogenase subunit 1; Validated
Probab=96.42 E-value=0.0051 Score=46.50 Aligned_cols=68 Identities=15% Similarity=0.162 Sum_probs=50.5
Q ss_pred ChhHHhhcCCCCCCCCCcCHHHHHHHHHHhhcCCCCccCCccccc------cccCCCCHHHHHHHHHHhhhCcCCc
Q psy3051 34 QPGYLASLVPGEMPEEGEDWRHIMRDMNTVIMPGITHWQSPHFHA------FYPSASSFPSILGELLSTGLGVLSF 103 (111)
Q Consensus 34 ~p~~l~~~~~~~~p~~g~~~~~~l~~~~~~v~~~~~~~~hPrf~~------~v~~~~~~~s~lad~l~sa~N~~~~ 103 (111)
-|++++...+.++|+++ +.+++++++.+....+.....|++|+| +++.....+...++++++ +|.+..
T Consensus 31 ~p~~~~~~~~~~lp~~~-~~~~v~~~~~~~~~~~~~~~~~~~~lg~g~~~~~~p~~~~~~~~~~~~~~~-y~~~~~ 104 (447)
T PRK00451 31 IPEELRLKRPLDLPPGL-SEMELLRHLRELAAKNKTAEEYPSFLGAGAYDHYIPAVVDHIISRSEFYTA-YTPYQP 104 (447)
T ss_pred CCHHHHhCCCCCCCCCC-CHHHHHHHHHHHHhcCCCcCcCcccCcccccCCcCcHHHHHHHhchhHHHh-cCCCCC
Confidence 47888888888899976 999999999986666666677999999 555444455555677766 676443
No 12
>PRK02769 histidine decarboxylase; Provisional
Probab=91.05 E-value=0.3 Score=36.64 Aligned_cols=49 Identities=18% Similarity=0.183 Sum_probs=37.1
Q ss_pred HHHHHHHHHhhcCCCCccCCccccccccCCCCH-HHHHHHHHHhhhCcCCcccccCC
Q psy3051 54 RHIMRDMNTVIMPGITHWQSPHFHAFYPSASSF-PSILGELLSTGLGVLSFTWSPHV 109 (111)
Q Consensus 54 ~~~l~~~~~~v~~~~~~~~hPrf~~~v~~~~~~-~s~lad~l~sa~N~~~~~~~~sp 109 (111)
.+.|+++...+ -+||+||.+++...++ .+.+++++....|+. +.|..++
T Consensus 8 ~~~~~~~~~~~------~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~n~-gnp~~~~ 57 (380)
T PRK02769 8 QKEIEDFWLYL------RHNQYFNVGYPEAADFDYSALKRFFSFSINNC-GDPYSKS 57 (380)
T ss_pred HHHHHHHHHHH------HHhhhcccCCCchhhcCHHHHHHHHHhhhccC-CCccccC
Confidence 45566666543 3699999999998888 699999999999874 4565554
No 13
>PF02686 Glu-tRNAGln: Glu-tRNAGln amidotransferase C subunit; InterPro: IPR003837 Glu-tRNAGln amidotransferase is a heterotrimeric enzyme that is required for correct decoding of glutamine codons during translation. The Glu-tRNA Gln amidotransferase enzyme is an important translational fidelity mechanism replacing incorrectly charged Glu-tRNAGln with the correct Gln-tRANGln via transmidation of the misacylated Glu-tRNAGln []. This activity supplements the lack of glutaminyl-tRNA synthetase activity in Gram-positive eubacteria, cyanobacteria, archaea, and organelles [].; GO: 0006450 regulation of translational fidelity; PDB: 2DQN_C 3IP4_C 2G5I_C 2F2A_C 2G5H_C 2DF4_C 3AL0_C 3KFU_G 3H0R_I 3H0L_U ....
Probab=78.47 E-value=3.2 Score=23.26 Aligned_cols=59 Identities=22% Similarity=0.370 Sum_probs=25.7
Q ss_pred CHHHHHHHHHHHHHHHHHHHhhccC---CCCCCCCChhHHhhcCCCCCCCCCcCHHHHHHHHH
Q psy3051 2 NSEEFREFGKAAIDFIADYHDTVRQ---RQVLPSVQPGYLASLVPGEMPEEGEDWRHIMRDMN 61 (111)
Q Consensus 2 ~~~~~~~~~~~~~~~i~~~~~~~~~---~pv~~~~~p~~l~~~~~~~~p~~g~~~~~~l~~~~ 61 (111)
+.++..++..+ ++.|++|++.+.+ ..|-|-..+.+....++.+.+..+...+++|+...
T Consensus 2 ~eeE~~~~~~~-l~~il~~~~~l~~vdt~~v~p~~~~~~~~~~lReD~~~~~~~~e~iL~nAp 63 (72)
T PF02686_consen 2 TEEELEKLTKQ-LNDILDYVEKLQEVDTEGVEPMYHPVEMSNPLREDEVEESLDREEILKNAP 63 (72)
T ss_dssp -HHHHHHHHHH-HHHHHHHHTTGGGS--TT----S-SS-SS--EB-S-----CTHHHHHTT-S
T ss_pred CHHHHHHHHHH-HHHHHHHHHHHhhcccCCCCcccccccccCCCCCCCCCCCCCHHHHHhccc
Confidence 34554444444 5666677777654 23334444445666777788888877777766544
No 14
>PRK12821 aspartyl/glutamyl-tRNA amidotransferase subunit C-like protein; Provisional
Probab=77.63 E-value=11 Score=29.42 Aligned_cols=60 Identities=10% Similarity=0.144 Sum_probs=37.5
Q ss_pred CHHHHHHHHHHHHHHHHHHHhhccC---CCCCCCCChh-HHhhcCCCCCCCCCcCHHHHHHHHHH
Q psy3051 2 NSEEFREFGKAAIDFIADYHDTVRQ---RQVLPSVQPG-YLASLVPGEMPEEGEDWRHIMRDMNT 62 (111)
Q Consensus 2 ~~~~~~~~~~~~~~~i~~~~~~~~~---~pv~~~~~p~-~l~~~~~~~~p~~g~~~~~~l~~~~~ 62 (111)
+.||..++..+ ++.+.+|++.+.+ ..|-|-..|. +....++++.|.++.+-+++++...+
T Consensus 406 SEEElEkl~~d-Ln~ILdyVEkLnEVDTegVEPM~hp~e~~~nvLREDeV~~sl~rEeaLsNAPe 469 (477)
T PRK12821 406 DDAELEKLQVE-FKDITSSFKQVEKIDTTNVKPMYAPFSNSPTPLRKDKDVVQKHQKILLKNCKE 469 (477)
T ss_pred CHHHHHHHHHH-HHHHHHHHHHHcccCcCCCCCcccCcccccCCCCCCCCCCCCCHHHHHhcCcc
Confidence 34444444333 5556667666543 4444444553 56678899999988888888876654
No 15
>TIGR00135 gatC glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase, C subunit. This model has been revised to remove the candidate sequence from Methanococcus jannaschii, now part of a related model.
Probab=77.35 E-value=13 Score=22.12 Aligned_cols=49 Identities=18% Similarity=0.363 Sum_probs=30.8
Q ss_pred HHHHHHHHhhccC---CCCCCCCChhHHhhcCCCCCCCCCcCHHHHHHHHHH
Q psy3051 14 IDFIADYHDTVRQ---RQVLPSVQPGYLASLVPGEMPEEGEDWRHIMRDMNT 62 (111)
Q Consensus 14 ~~~i~~~~~~~~~---~pv~~~~~p~~l~~~~~~~~p~~g~~~~~~l~~~~~ 62 (111)
+..|.+|++.+.+ ..|-|-..+.+....++.+.+..+.+-+++++...+
T Consensus 29 l~~il~~~~~L~~vdt~~v~p~~~~~~~~~~lReD~~~~~~~~e~~l~nap~ 80 (93)
T TIGR00135 29 LDKILGFVEQLNEVDTENVEPMTHPLEISNVLREDEPEEPLSRDDILKNAPE 80 (93)
T ss_pred HHHHHHHHHHHhcCccCCCCcccCccccccCCCCCCCCCCCCHHHHHhcCch
Confidence 4555566665543 223333344455577888999888888888877654
No 16
>TIGR01827 gatC_rel Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase, subunit C, putative. This model represents a family small family related to GatC, the third subunit of an enzyme for completing the charging of tRNA(Gln) by amidating the Glu-tRNA(Gln). The few known archaea that contain a member of this family appear to produce Asn-tRNA(Asn) by an analogous amidotransferase reaction. This protein is proposed to substitute for GatC in the charging of both tRNAs.
Probab=71.30 E-value=17 Score=20.90 Aligned_cols=52 Identities=2% Similarity=-0.017 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHhhccCCCCCCCCChhHHhhcCCCCCCCCCcC--HHHHHHHHH
Q psy3051 8 EFGKAAIDFIADYHDTVRQRQVLPSVQPGYLASLVPGEMPEEGED--WRHIMRDMN 61 (111)
Q Consensus 8 ~~~~~~~~~i~~~~~~~~~~pv~~~~~p~~l~~~~~~~~p~~g~~--~~~~l~~~~ 61 (111)
+.++.++.-+.+.++.++ .|-+-..+.+....++.+.+..+.+ .+++|+..-
T Consensus 4 ~~~~~~~~~~~e~L~evd--~VeP~~~~~~~~n~lReD~~~~s~~~~re~iL~NAP 57 (73)
T TIGR01827 4 KEAEEILEEFSERLEDVD--EEEETYYISDGSNKFREDEEPRCDPEFKKKMLENAP 57 (73)
T ss_pred HHHHHHHHHHHHHHHccC--CCCCcccccccccCCCCCcCCCCcchhHHHHHHcCC
Confidence 445667777777777776 4555556666777888888877665 556655443
No 17
>COG0721 GatC Asp-tRNAAsn/Glu-tRNAGln amidotransferase C subunit [Translation, ribosomal structure and biogenesis]
Probab=68.74 E-value=23 Score=21.41 Aligned_cols=49 Identities=16% Similarity=0.319 Sum_probs=34.5
Q ss_pred HHHHHHHHhhcc---CCCCCCCCChhHHhhcCCCCCCCCCcCHHHHHHHHHH
Q psy3051 14 IDFIADYHDTVR---QRQVLPSVQPGYLASLVPGEMPEEGEDWRHIMRDMNT 62 (111)
Q Consensus 14 ~~~i~~~~~~~~---~~pv~~~~~p~~l~~~~~~~~p~~g~~~~~~l~~~~~ 62 (111)
+..|.+|++.+. ...|-|-..+-+..+.++.+.+..+...+++++...+
T Consensus 31 l~~Il~~veql~evD~~~vep~~~~~~~~~~lReD~~~~~~~~~~~l~nap~ 82 (96)
T COG0721 31 LEDILGYVEQLNEVDTEGVEPTTHPLEVSNVLREDEVTEGLDREELLANAPE 82 (96)
T ss_pred HHHHHHHHHHHHhccccCCCcccccccccccccCCCCCCCcCHHHHHhcCCc
Confidence 445556665543 3445555667777788899999999888888887765
No 18
>COG4289 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=66.78 E-value=11 Score=28.65 Aligned_cols=48 Identities=10% Similarity=-0.063 Sum_probs=35.8
Q ss_pred HHHHHhhcCCCCccCCccccccccCCCCHHHHHHHHHHhhhCcCCcccc
Q psy3051 58 RDMNTVIMPGITHWQSPHFHAFYPSASSFPSILGELLSTGLGVLSFTWS 106 (111)
Q Consensus 58 ~~~~~~v~~~~~~~~hPrf~~~v~~~~~~~s~lad~l~sa~N~~~~~~~ 106 (111)
..+.+ -+...+..+||.|+|++.+--..+.-+|++.-+.+=..-..|+
T Consensus 93 ~~l~k-~i~~gTdP~h~dYwg~~~grdQrlve~A~L~~Al~lape~lWe 140 (458)
T COG4289 93 AILAK-GIANGTDPTHPDYWGTVHGRDQRLVELAALGFALWLAPESLWE 140 (458)
T ss_pred HHHHH-HHhcCCCCCCcchhcccccccchHHHHHHHHHHHHhChHhhcc
Confidence 44443 5778899999999999999878877777777666655555554
No 19
>PF11149 DUF2924: Protein of unknown function (DUF2924); InterPro: IPR021322 This entry is represented by Bacteriophage WO, Gp30. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This bacterial family of proteins has no known function.
Probab=65.85 E-value=4.5 Score=26.24 Aligned_cols=12 Identities=33% Similarity=0.861 Sum_probs=10.4
Q ss_pred CCccCCcccccc
Q psy3051 68 ITHWQSPHFHAF 79 (111)
Q Consensus 68 ~~~~~hPrf~~~ 79 (111)
.++|+.|+|||-
T Consensus 124 Gt~WsGp~FFGL 135 (136)
T PF11149_consen 124 GTRWSGPRFFGL 135 (136)
T ss_pred CCcccCcccccc
Confidence 578999999984
No 20
>PRK00034 gatC aspartyl/glutamyl-tRNA amidotransferase subunit C; Reviewed
Probab=55.91 E-value=41 Score=19.87 Aligned_cols=50 Identities=12% Similarity=0.280 Sum_probs=30.6
Q ss_pred HHHHHHHHHhhccC---CCCCCCCChhHHhhcCCCCCCCCCcCHHHHHHHHHH
Q psy3051 13 AIDFIADYHDTVRQ---RQVLPSVQPGYLASLVPGEMPEEGEDWRHIMRDMNT 62 (111)
Q Consensus 13 ~~~~i~~~~~~~~~---~pv~~~~~p~~l~~~~~~~~p~~g~~~~~~l~~~~~ 62 (111)
-++.|.+|++.+.+ ..|-+-..+.+....++.+.+..+.+.+++++...+
T Consensus 30 ~l~~il~~~~~l~~vd~~~vep~~~~~~~~~~lReD~~~~~~~~e~~l~nap~ 82 (95)
T PRK00034 30 QLNKILDFVEQLNEVDTEGVEPTTHPLDMKNVLREDVVTESLPREEALKNAPE 82 (95)
T ss_pred HHHHHHHHHHHHhhcccCCCCcccCcccccCCCCCCCCCCCCCHHHHHhcCch
Confidence 35556666665543 233333344445677888888888887777766553
No 21
>COG4867 Uncharacterized protein with a von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=54.34 E-value=45 Score=26.18 Aligned_cols=68 Identities=10% Similarity=0.044 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCCCCCCChhHHhhcCCCCCCCCCcCHHHHHHHHHHhhcCCCCccCCccccccc
Q psy3051 6 FREFGKAAIDFIADYHDTVRQRQVLPSVQPGYLASLVPGEMPEEGEDWRHIMRDMNTVIMPGITHWQSPHFHAFY 80 (111)
Q Consensus 6 ~~~~~~~~~~~i~~~~~~~~~~pv~~~~~p~~l~~~~~~~~p~~g~~~~~~l~~~~~~v~~~~~~~~hPrf~~~v 80 (111)
-+....++++.+.+.++..+.. .-.+.+..+.-..-.+..|++|++++++++.+...+-.+ -||++-+
T Consensus 179 d~~~~~eml~dlndll~kh~~g-~dt~~df~~fm~khge~fpe~pr~~~el~d~laAR~aaa------Srf~nsl 246 (652)
T COG4867 179 DRRRVTEMLDDLNDLLDKHARG-EDTQRDFDEFMTKHGEFFPENPRNVEELLDSLAARAAAA------SRFRNSL 246 (652)
T ss_pred hHHHHHHHHHHHHHHHHHhccC-CCCcccHHHHHHhccccCCCCcccHHHHHHHHHHHHHHH------HHHhhhh
Confidence 3455566667677766654322 122234444444456778999999999999887665333 3566544
No 22
>COG2406 Protein distantly related to bacterial ferritins [General function prediction only]
Probab=52.09 E-value=68 Score=21.32 Aligned_cols=19 Identities=21% Similarity=0.303 Sum_probs=14.7
Q ss_pred CCCCCCCcCHHHHHHHHHH
Q psy3051 44 GEMPEEGEDWRHIMRDMNT 62 (111)
Q Consensus 44 ~~~p~~g~~~~~~l~~~~~ 62 (111)
..+|+.+.+.+++|.-+.+
T Consensus 96 a~LPedp~D~~~~l~vlv~ 114 (172)
T COG2406 96 AYLPEDPYDIDEILAVLVK 114 (172)
T ss_pred CCCCCCccCHHHHHHHHHH
Confidence 4689999999988876653
No 23
>PF06956 RtcR: Regulator of RNA terminal phosphate cyclase; InterPro: IPR009715 RtcR is a sigma54-dependent enhancer binding protein [] that activates transcription of the rtcBA operon. The product of the rtcA gene is an RNA 3 -terminal phosphate cyclase []. This domain is found at the N terminus of the RtcR sequence. RtcR, and other sigma54-dependent activators, contain IPR002078 from INTERPRO in the central region of the protein sequence.
Probab=51.21 E-value=58 Score=22.24 Aligned_cols=41 Identities=2% Similarity=0.031 Sum_probs=35.9
Q ss_pred CCCcCHHHHHHHHHHhhcCCCCccCCccccccccCCCCHHH
Q psy3051 48 EEGEDWRHIMRDMNTVIMPGITHWQSPHFHAFYPSASSFPS 88 (111)
Q Consensus 48 ~~g~~~~~~l~~~~~~v~~~~~~~~hPrf~~~v~~~~~~~s 88 (111)
.+|.+++++...+.+-.-.|...+.+.+|+=|+..|+-.+-
T Consensus 79 ~dPWDfeeVY~~l~dfa~~Y~Fd~e~E~YlvHITTGTHVaQ 119 (183)
T PF06956_consen 79 ADPWDFEEVYAALHDFARGYPFDPENEDYLVHITTGTHVAQ 119 (183)
T ss_pred CCCccHHHHHHHHHHHHhhCCCCCCCCceEEEecCCcHHHH
Confidence 57899999999999988899999999999999998855443
No 24
>COG2071 Predicted glutamine amidotransferases [General function prediction only]
Probab=45.42 E-value=12 Score=26.64 Aligned_cols=37 Identities=24% Similarity=0.310 Sum_probs=31.7
Q ss_pred CCCcCHHHHHHHHHHhhcCCCCccCCccccccccCCCC
Q psy3051 48 EEGEDWRHIMRDMNTVIMPGITHWQSPHFHAFYPSASS 85 (111)
Q Consensus 48 ~~g~~~~~~l~~~~~~v~~~~~~~~hPrf~~~v~~~~~ 85 (111)
+++....++++.+...|+.++ ..-||+|||--++...
T Consensus 49 ~d~~~~~~~l~~iDgliltGg-~nV~P~~YGee~~~~~ 85 (243)
T COG2071 49 EDPEDARQYLDLIDGLILTGG-SNVDPSLYGEEPSEKD 85 (243)
T ss_pred CCHHHHHHHHhhccEEEecCC-CcCCHHHcCCCCCccc
Confidence 457788999999999999999 8899999998877654
No 25
>cd00503 Frataxin Frataxin is a nuclear-encoded mitochondrial protein implicated in Friedreich's ataxia (FRDA), an human autosomal recessive neurodegenerative disease; Frataxin is found in eukaryotes and in purple bacteria; lack of frataxin causes iron to accumulate in the mitochondrial matrix suggesting that frataxin is involved in mitochondrial iron homeostasis and possibly in iron transport; the domain has an alpha-beta fold consisting of two helices flanking an antiparallel beta sheet.
Probab=43.94 E-value=49 Score=20.30 Aligned_cols=25 Identities=24% Similarity=0.306 Sum_probs=22.4
Q ss_pred CCHHHHHHHHHHHHHHHHHHHhhcc
Q psy3051 1 MNSEEFREFGKAAIDFIADYHDTVR 25 (111)
Q Consensus 1 ~~~~~~~~~~~~~~~~i~~~~~~~~ 25 (111)
|+..+|.+++.+.++.|.+.++...
T Consensus 1 M~d~~f~~~ad~~l~~i~~~ld~~~ 25 (105)
T cd00503 1 MNESEFHRLADDLLLKIEDTLEEQD 25 (105)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhcC
Confidence 7889999999999999999998654
No 26
>PRK13456 DNA protection protein DPS; Provisional
Probab=42.65 E-value=1.1e+02 Score=20.98 Aligned_cols=43 Identities=9% Similarity=0.049 Sum_probs=25.5
Q ss_pred HHHHHHhhccCCCCCCCCChhHHhhcCCC---CCCCCCcCHHHHHHHHH
Q psy3051 16 FIADYHDTVRQRQVLPSVQPGYLASLVPG---EMPEEGEDWRHIMRDMN 61 (111)
Q Consensus 16 ~i~~~~~~~~~~pv~~~~~p~~l~~~~~~---~~p~~g~~~~~~l~~~~ 61 (111)
++.+.+.++...|+. +|+++..+-.+ .+|+++.++.++|....
T Consensus 71 ~lAeRI~qLGG~P~~---~p~~~~~ls~~~~~~~p~d~tdv~~mL~~~L 116 (186)
T PRK13456 71 ALVPRIYELGGKLPR---DIREFHDISACPDAYLPENPTDPKEILKVLL 116 (186)
T ss_pred HHHHHHHHhCCCCCC---ChHHHhhhhcCccccCCCCcchHHHHHHHHH
Confidence 444555556655544 67755554443 45777777777777654
No 27
>PRK01379 cyaY frataxin-like protein; Provisional
Probab=42.10 E-value=53 Score=20.22 Aligned_cols=24 Identities=33% Similarity=0.576 Sum_probs=21.6
Q ss_pred CCHHHHHHHHHHHHHHHHHHHhhc
Q psy3051 1 MNSEEFREFGKAAIDFIADYHDTV 24 (111)
Q Consensus 1 ~~~~~~~~~~~~~~~~i~~~~~~~ 24 (111)
|+..+|.+++..+++.|.+.++..
T Consensus 1 M~~~ef~~lad~~L~~ie~~ie~~ 24 (103)
T PRK01379 1 MNNSEFSKIAETTIAYIADKIEEQ 24 (103)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhc
Confidence 788999999999999999999853
No 28
>PRK12820 bifunctional aspartyl-tRNA synthetase/aspartyl/glutamyl-tRNA amidotransferase subunit C; Provisional
Probab=41.75 E-value=88 Score=25.92 Aligned_cols=59 Identities=10% Similarity=0.069 Sum_probs=36.1
Q ss_pred CHHHHHHHHHHHHHHHHHHHhhccCC--CCCCCCChhHHhhcCCCCCCCCCc---CHHHHHHHHH
Q psy3051 2 NSEEFREFGKAAIDFIADYHDTVRQR--QVLPSVQPGYLASLVPGEMPEEGE---DWRHIMRDMN 61 (111)
Q Consensus 2 ~~~~~~~~~~~~~~~i~~~~~~~~~~--pv~~~~~p~~l~~~~~~~~p~~g~---~~~~~l~~~~ 61 (111)
+.++..++..+ +..|++|++.+.+- .|-|-..|.++...++.+.+.++. +.+++|+..-
T Consensus 629 ~eeE~~~~~~~-L~~IL~~ve~L~evdt~VeP~~~~~~~~~~lReD~v~~~~~~~~~e~~L~nAP 692 (706)
T PRK12820 629 AEAERAAIESA-LADAEELAAQLEDIACDEEPLFSPAPAANRMGEGLEARECSFAATGEILKNAP 692 (706)
T ss_pred CHHHHHHHHHH-HHHHHHHHHHHhhccCCCCCCcCccccccCCCCCcCCCCCCccCHHHHHhcCc
Confidence 34444433333 55566776665432 366666677778888888888775 3667666544
No 29
>PF01491 Frataxin_Cyay: Frataxin-like domain; InterPro: IPR002908 The eukaryotic proteins in this entry include frataxin, the protein that is mutated in Friedreich's ataxia [], and related sequences. Friedreich's ataxia is a progressive neurodegenerative disorder caused by loss of function mutations in the gene encoding frataxin (FRDA). Frataxin mRNA is predominantly expressed in tissues with a high metabolic rate (including liver, kidney, brown fat and heart). Mouse and yeast frataxin homologues contain a potential N-terminal mitochondrial targeting sequence, and human frataxin has been observed to co-localise with a mitochondrial protein. Furthermore, disruption of the yeast gene has been shown to result in mitochondrial dysfunction. Friedreich's ataxia is thus believed to be a mitochondrial disease caused by a mutation in the nuclear genome (specifically, expansion of an intronic GAA triplet repeat) [, , ]. The bacterial proteins in this entry are iron-sulphur cluster (FeS) metabolism CyaY proteins hmologous to eukaryotic frataxin. Partial Phylogenetic Profiling [] suggests that CyaY most likely functions as part of the ISC system for FeS cluster biosynthesis, and is supported by expermimental data in some species [, ]. ; PDB: 1EW4_A 2P1X_A 1SOY_A 2EFF_A 3T3T_B 3S4M_A 3T3K_A 3S5D_A 1LY7_A 3T3X_B ....
Probab=39.44 E-value=47 Score=20.46 Aligned_cols=25 Identities=24% Similarity=0.469 Sum_probs=21.5
Q ss_pred CCHHHHHHHHHHHHHHHHHHHhhcc
Q psy3051 1 MNSEEFREFGKAAIDFIADYHDTVR 25 (111)
Q Consensus 1 ~~~~~~~~~~~~~~~~i~~~~~~~~ 25 (111)
|+..+|.+++.++++.|.+.++.+.
T Consensus 1 Mt~~~f~~lad~~l~~i~~~le~~~ 25 (109)
T PF01491_consen 1 MTESEFHQLADETLDSIEDALEELD 25 (109)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHTCT
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 7788999999999999999999653
No 30
>PRK00446 cyaY frataxin-like protein; Provisional
Probab=38.97 E-value=62 Score=19.90 Aligned_cols=24 Identities=29% Similarity=0.385 Sum_probs=21.7
Q ss_pred CCHHHHHHHHHHHHHHHHHHHhhc
Q psy3051 1 MNSEEFREFGKAAIDFIADYHDTV 24 (111)
Q Consensus 1 ~~~~~~~~~~~~~~~~i~~~~~~~ 24 (111)
|+..+|.+++.++++.|.+.++..
T Consensus 1 m~e~ef~~~ad~~l~~ie~~ld~~ 24 (105)
T PRK00446 1 MNDSEFHQLADALWQAIEEQLDDD 24 (105)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhc
Confidence 788999999999999999999863
No 31
>PF02762 Cbl_N3: CBL proto-oncogene N-terminus, SH2-like domain; InterPro: IPR014742 Cbl (Casitas B-lineage lymphoma) is an adaptor protein that functions as a negative regulator of many signalling pathways that start from receptors at the cell surface. The N-terminal region of Cbl contains a Cbl-type phosphotyrosine-binding (Cbl-PTB) domain, which is composed of three evolutionarily conserved domains: an N-terminal four-helix bundle (4H) domain, an EF hand-like calcium-binding domain, and a divergent SH2-like domain. The calcium-bound EF-hand wedges between the 4H and SH2 domains, and roughly determines their relative orientation. The Cbl-PTB domain has also been named Cbl N-terminal (Cbl-N) or tyrosine kinase binding (TKB) domain [, ]. The N-terminal 4H domain contains four long alpha-helices. The C and D helices in this domain pack against the adjacent EF-hand-like domain, and a highly conserved loop connecting the A and B helices contacts the SH2-like domain. The EF-hand motif is similar to classical EF-hand proteins. The SH2-like domain retains the general helix-sheet-helix architecture of the SH2 fold, but lacks the secondary beta-sheet, comprising beta-strands D', E and F, and also a prominent BG loop []. This entry represents the SH2-like domain.; PDB: 3PFV_A 3VGO_A 3PLF_B 2Y1M_A 2CBL_A 3BUX_B 3BUN_B 3BUM_B 3OB1_B 3BUW_B ....
Probab=38.09 E-value=14 Score=21.74 Aligned_cols=10 Identities=30% Similarity=0.643 Sum_probs=5.9
Q ss_pred CCcccccccc
Q psy3051 72 QSPHFHAFYP 81 (111)
Q Consensus 72 ~hPrf~~~v~ 81 (111)
.||.|++|+.
T Consensus 1 tHpgY~AFlT 10 (86)
T PF02762_consen 1 THPGYMAFLT 10 (86)
T ss_dssp S-TTBETT--
T ss_pred CCCceeEEEe
Confidence 4899998864
No 32
>PF05186 Dpy-30: Dpy-30 motif; InterPro: IPR007858 This motif is about 40 residues long and is probably formed of two alpha-helices. It is found in the Dpy-30 proteins, hence the motifs name. Dpy-30 from Caenorhabditis elegans is an essential component of dosage compensation machinery and loss of dpy-30 activity results in XX-specific lethality; in XO animals, Dpy-30 is required for developmental processes other than dosage compensation []. In yeast, the homologue of DPY-30, Saf19p, functions as part of the Set1 complex that is necessary for the methylation of histone H3 at lysine residue 4; Set1 is a key part of epigenetic developmental control []. There is also a human homologue of Dpy-30 []. This Dpy-30 region may be a dimerisation motif analogous that found in the cAMP-dependent protein kinase regulator, type II PKA, R subunit IPR003117 from INTERPRO.; PDB: 3G36_D.
Probab=37.17 E-value=31 Score=17.52 Aligned_cols=14 Identities=21% Similarity=0.143 Sum_probs=9.9
Q ss_pred CCCHHHHHHHHHHh
Q psy3051 83 ASSFPSILGELLST 96 (111)
Q Consensus 83 ~~~~~s~lad~l~s 96 (111)
+.+|+.++|+||-.
T Consensus 26 P~DPi~~La~~Ll~ 39 (42)
T PF05186_consen 26 PEDPIEFLAEYLLK 39 (42)
T ss_dssp -SSHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHH
Confidence 45888888888753
No 33
>KOG3413|consensus
Probab=36.30 E-value=38 Score=22.37 Aligned_cols=25 Identities=16% Similarity=0.531 Sum_probs=21.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHhhccC
Q psy3051 2 NSEEFREFGKAAIDFIADYHDTVRQ 26 (111)
Q Consensus 2 ~~~~~~~~~~~~~~~i~~~~~~~~~ 26 (111)
+..++.+++...++.+.||++++.+
T Consensus 43 t~~~YhrlAddTLd~L~d~fEdl~e 67 (156)
T KOG3413|consen 43 TRLEYHRLADDTLDHLSDYFEDLAE 67 (156)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3457888999999999999998765
No 34
>PF09106 SelB-wing_2: Elongation factor SelB, winged helix ; InterPro: IPR015190 This entry represents a domain with a winged helix-type fold, which consists of a closed 3-helical bundle with a right-handed twist, and a small beta-sheet wing []. Different winged helix domains share a common structure, but can differ in sequence. This entry is designated "type 2". The winged helix motif is involved in both DNA and RNA binding. In the elongation factor SelB, the winged helix domains recognise RNA, allowing the complex to wrap around the small ribosomal subunit. In bacteria, the incorporation of the amino acid selenocysteine into proteins requires elongation factor SelB, which binds both transfer RNA (tRNA) and mRNA. SelB binds to an mRNA hairpin formed by the selenocysteine insertion sequence (SECIS) with extremely high specificity []. ; GO: 0003723 RNA binding, 0003746 translation elongation factor activity, 0005525 GTP binding, 0001514 selenocysteine incorporation, 0005737 cytoplasm; PDB: 2V9V_A 1LVA_A 2PLY_A 2UWM_A.
Probab=36.17 E-value=72 Score=17.03 Aligned_cols=44 Identities=16% Similarity=0.376 Sum_probs=27.7
Q ss_pred HHHHHHHHhhccCCCCCCCCChhHHhhcCCC-CCCCCCcCHHHHHHHHHH
Q psy3051 14 IDFIADYHDTVRQRQVLPSVQPGYLASLVPG-EMPEEGEDWRHIMRDMNT 62 (111)
Q Consensus 14 ~~~i~~~~~~~~~~pv~~~~~p~~l~~~~~~-~~p~~g~~~~~~l~~~~~ 62 (111)
++.+.+|.+. .|--++...+++++.+.. .+| ...++.+++.+.+
T Consensus 2 ~~~L~~yH~~---~Plr~G~~keeLrsrl~~~~l~--~k~~~~ll~~l~~ 46 (59)
T PF09106_consen 2 LEILAEYHRE---NPLRPGMPKEELRSRLFKPRLP--PKLFNALLEALVA 46 (59)
T ss_dssp HHHHHHHHHH----TTSS-EEHHHHHHHCST-TS---HCCHHHHHHHHHH
T ss_pred hHHHHHHHHH---CcCccCcCHHHHHHHHhhccCC--HHHHHHHHHHHHH
Confidence 5667777776 455677888999976533 344 3456788887765
No 35
>COG0605 SodA Superoxide dismutase [Inorganic ion transport and metabolism]
Probab=36.10 E-value=41 Score=23.38 Aligned_cols=52 Identities=13% Similarity=0.259 Sum_probs=36.6
Q ss_pred CCcCHHHHHHHHHHh----hcCCCCccCCccccccccCC---CCHHHHHHHHHHhhhCc
Q psy3051 49 EGEDWRHIMRDMNTV----IMPGITHWQSPHFHAFYPSA---SSFPSILGELLSTGLGV 100 (111)
Q Consensus 49 ~g~~~~~~l~~~~~~----v~~~~~~~~hPrf~~~v~~~---~~~~s~lad~l~sa~N~ 100 (111)
++.+.++++...... ...+.-+++|.-|+.-+..+ +.|.+-|++.|...|+.
T Consensus 52 ~~~~~e~~~~~~~~~~~~~~nn~~gh~NH~~fw~~l~p~~gg~~p~g~L~~aI~~~FGS 110 (204)
T COG0605 52 EDLSLEEIIKKLAGLPAALFNNAGGHWNHSLFWENLSPGGGGGKPTGELAAAINKDFGS 110 (204)
T ss_pred ccCCHHHHHHHHhcccHHHHhcchhhhhHHHHHhhcCCCCCCCCCCHHHHHHHHHHhcC
Confidence 445555666655543 34567788999999988774 78888888888776654
No 36
>TIGR03812 tyr_de_CO2_Arch tyrosine decarboxylase MnfA. Members of this protein family are the archaeal form, MnfA, of tyrosine decarboxylase, and are involved in methanofuran biosynthesis. Members show clear homology to the Enterococcus form, Tdc, that is involved in tyrosine decarboxylation for resistance to acidic conditions.
Probab=35.59 E-value=62 Score=23.50 Aligned_cols=34 Identities=0% Similarity=-0.003 Sum_probs=21.9
Q ss_pred HHHHHHHHHhhcCCCCccCCccccccccCCCCHHH
Q psy3051 54 RHIMRDMNTVIMPGITHWQSPHFHAFYPSASSFPS 88 (111)
Q Consensus 54 ~~~l~~~~~~v~~~~~~~~hPrf~~~v~~~~~~~s 88 (111)
+++++++.+ ...++++.+.||++..+...+.+..
T Consensus 3 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 36 (373)
T TIGR03812 3 EEVLEELKE-YRSEDLKYSDGRILGSMCTNPHPIA 36 (373)
T ss_pred HHHHHHHHH-HHhcCCCCCCCcEEEEEeCCchHHH
Confidence 566666665 5666666666676666666665553
No 37
>PF05391 Lsm_interact: Lsm interaction motif; InterPro: IPR008669 This short motif is found at the C terminus of Prp24 proteins and probably interacts with the Lsm proteins to promote U4/U6 formation [].
Probab=32.13 E-value=42 Score=14.56 Aligned_cols=10 Identities=20% Similarity=0.504 Sum_probs=6.8
Q ss_pred CCHHHHHHHH
Q psy3051 1 MNSEEFREFG 10 (111)
Q Consensus 1 ~~~~~~~~~~ 10 (111)
|+.++||++.
T Consensus 10 ~SNddFrkmf 19 (21)
T PF05391_consen 10 KSNDDFRKMF 19 (21)
T ss_pred cchHHHHHHH
Confidence 4667888764
No 38
>PRK12362 germination protease; Provisional
Probab=31.92 E-value=32 Score=25.51 Aligned_cols=69 Identities=14% Similarity=0.221 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHHhhccC-----CCCCCCCChhHHhhcCCCC-------CCCCCcCHHHHHHHHHHhhcCCCCccCCcc
Q psy3051 8 EFGKAAIDFIADYHDTVRQ-----RQVLPSVQPGYLASLVPGE-------MPEEGEDWRHIMRDMNTVIMPGITHWQSPH 75 (111)
Q Consensus 8 ~~~~~~~~~i~~~~~~~~~-----~pv~~~~~p~~l~~~~~~~-------~p~~g~~~~~~l~~~~~~v~~~~~~~~hPr 75 (111)
.+...+++.+.+.+.+-.. ..++...+.++.++++.+- +=-.|.+.|++++.+...|..+....-||+
T Consensus 236 tI~~D~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ek~~li~evl~p~~~~l~VTPKeID~~i~~~s~iIa~giN~al~p~ 315 (318)
T PRK12362 236 TIANDTIDLVLDELINQSEEGSEFYNMLKSLNQEEKQQLIKEVLSPYVGNLIVTPKEIDELIENLSKIIAGGINMALHPG 315 (318)
T ss_pred HHHHHHHHHHHHHHhhhcccccchhhhhhccCHHHHHHHHHHHhCccCCcceECcHhHHHHHHHHHHHHHHHHHHHhCcc
Confidence 4556777777776643221 2344445566666554322 333578899999999876666555566665
Q ss_pred c
Q psy3051 76 F 76 (111)
Q Consensus 76 f 76 (111)
.
T Consensus 316 ~ 316 (318)
T PRK12362 316 I 316 (318)
T ss_pred c
Confidence 3
No 39
>PF10685 KGG: Stress-induced bacterial acidophilic repeat motif; InterPro: IPR019626 This repeat contains a highly conserved, characteristic sequence motif, KGG, that is recognised by plants and lower eukaryotes. Further downstream from this motif is a Walker A, nucleotide binding motif. YciG is expressed as part of a three-gene operon, yciGFE and this operon is induced by stress and is regulated by RpoS, which controls the general stress-response in E coli. YciG was shown to be important for stationary-phase resistance to thermal stress and in particular to acid stress [].
Probab=31.69 E-value=55 Score=14.50 Aligned_cols=12 Identities=42% Similarity=0.767 Sum_probs=7.6
Q ss_pred CCHHHHHHHHHH
Q psy3051 1 MNSEEFREFGKA 12 (111)
Q Consensus 1 ~~~~~~~~~~~~ 12 (111)
||+|..++++.+
T Consensus 5 ~d~e~~~eig~k 16 (23)
T PF10685_consen 5 MDPEKAREIGRK 16 (23)
T ss_pred cCHHHHHHHHHh
Confidence 567777766654
No 40
>PLN03032 serine decarboxylase; Provisional
Probab=30.50 E-value=2e+02 Score=21.65 Aligned_cols=86 Identities=7% Similarity=0.015 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHHHHHhhcc----CCCCCCCCChhHHhhcCC---C------CCCCCCcCHHHHHHHHHHhhcCCCCccC
Q psy3051 6 FREFGKAAIDFIADYHDTVR----QRQVLPSVQPGYLASLVP---G------EMPEEGEDWRHIMRDMNTVIMPGITHWQ 72 (111)
Q Consensus 6 ~~~~~~~~~~~i~~~~~~~~----~~pv~~~~~p~~l~~~~~---~------~~p~~g~~~~~~l~~~~~~v~~~~~~~~ 72 (111)
+.+...++++.+.+|++... ..|+-...++..+...++ . .....|....++++++.+.+. ...+..
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~gnP~s~~~~g~~a~~~e~~v~~~ia-~llg~~ 82 (374)
T PLN03032 4 RDAYMADILASYDKLLAEKSSVHFGYPYNLDFDYGELSQLMKYSINNLGDPFIESNYGVHSRQFEVGVLDWFA-RLWELE 82 (374)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhccCCCchhccChHHHHHHHHhcccCCCCCcccCCCCccHHHHHHHHHHHHH-HHhCCC
Confidence 44445556666666665532 345544445544443322 1 112234456677777765433 344433
Q ss_pred CccccccccCCCCHHHHHHH
Q psy3051 73 SPHFHAFYPSASSFPSILGE 92 (111)
Q Consensus 73 hPrf~~~v~~~~~~~s~lad 92 (111)
-..+.|++.++++-.-++|=
T Consensus 83 ~~~~~G~fTsGGTEaNl~al 102 (374)
T PLN03032 83 KDEYWGYITTCGTEGNLHGI 102 (374)
T ss_pred CccCCEEEeCchHHHHHHHH
Confidence 33467999999888776653
No 41
>PF10022 DUF2264: Uncharacterized protein conserved in bacteria (DUF2264); InterPro: IPR016624 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=28.86 E-value=2.6e+02 Score=21.15 Aligned_cols=84 Identities=13% Similarity=0.117 Sum_probs=53.6
Q ss_pred CHHHHHHHHHHHHHHHHHHHhhccC---CCCCCC-----CChhHHhhc----------C----CCCCCCCCcCHHHHHHH
Q psy3051 2 NSEEFREFGKAAIDFIADYHDTVRQ---RQVLPS-----VQPGYLASL----------V----PGEMPEEGEDWRHIMRD 59 (111)
Q Consensus 2 ~~~~~~~~~~~~~~~i~~~~~~~~~---~pv~~~-----~~p~~l~~~----------~----~~~~p~~g~~~~~~l~~ 59 (111)
+.+++.+++.++++-+..|++.-.. .|+... ...+.|+.. + ...-++++....++.+.
T Consensus 2 tR~~w~~~~~~ll~p~~~~~s~~~~~~~~P~~~~a~~~~~~a~~LEgfaR~l~g~ap~l~~~~~~~~~~~~~~~~~~~~~ 81 (361)
T PF10022_consen 2 TRADWVEALDKLLEPLLPYLSPGGARIRMPGESGAHYDRKAADYLEGFARPLWGAAPWLAGGGEDDDTEEGKLREKLREL 81 (361)
T ss_pred CHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCcCCcCcchhHHHHHHHHHHHHHHHHHhcCCCcCcccccccHHHHHHH
Confidence 4677888899999999998865432 222221 111213221 1 11234566677888888
Q ss_pred HHHhhcCCCCccCCccccccccCCCCH
Q psy3051 60 MNTVIMPGITHWQSPHFHAFYPSASSF 86 (111)
Q Consensus 60 ~~~~v~~~~~~~~hPrf~~~v~~~~~~ 86 (111)
..+ -+...+...||.|++++......
T Consensus 82 ~~~-gi~~GtdP~spdyw~~~~~~dQ~ 107 (361)
T PF10022_consen 82 YRK-GIANGTDPKSPDYWGFIGDYDQR 107 (361)
T ss_pred HHH-HHHhcCCCCCccccCCcccchhh
Confidence 886 56778889999999998876333
No 42
>PRK06474 hypothetical protein; Provisional
Probab=28.39 E-value=1.1e+02 Score=20.53 Aligned_cols=23 Identities=26% Similarity=0.605 Sum_probs=20.4
Q ss_pred CCHHHHHHHHHHHHHHHHHHHhh
Q psy3051 1 MNSEEFREFGKAAIDFIADYHDT 23 (111)
Q Consensus 1 ~~~~~~~~~~~~~~~~i~~~~~~ 23 (111)
|+.++++++..++.+.+..|.+.
T Consensus 136 Lt~ee~~el~~el~~ll~~y~~~ 158 (178)
T PRK06474 136 LDEEEFEEFQSELNELMIKYYNS 158 (178)
T ss_pred cCHHHHHHHHHHHHHHHHHHHhC
Confidence 57899999999999999999875
No 43
>TIGR01750 fabZ beta-hydroxyacyl-[acyl carrier protein] dehydratase FabZ. This enzyme, FabZ, shows overlapping substrate specificity with FabA with regard to chain length in fatty acid biosynthesis. FabZ works preferentially on shorter chains and is often designated (3R)-hydroxymyristoyl-[acyl carrier protein] dehydratase, although its actual specificity is broader. Unlike FabA, FabZ does not function as an isomerase and cannot initiate unsaturated fatty acid biosynthesis. However, only FabZ can act during the elongation of unsaturated fatty acid chains.
Probab=28.25 E-value=82 Score=19.65 Aligned_cols=34 Identities=18% Similarity=0.338 Sum_probs=24.3
Q ss_pred cCCCCccCCccccccccCCCCHHH-HHHHHHHhhh
Q psy3051 65 MPGITHWQSPHFHAFYPSASSFPS-ILGELLSTGL 98 (111)
Q Consensus 65 ~~~~~~~~hPrf~~~v~~~~~~~s-~lad~l~sa~ 98 (111)
-...+..+||-|-||+|+.+..++ ++-|+++.+.
T Consensus 32 ~~~~v~~~~~~f~gHFp~~pv~Pg~l~iE~~aQ~~ 66 (140)
T TIGR01750 32 AIKNVTINEPFFQGHFPEKPIMPGVLIVEALAQAG 66 (140)
T ss_pred EEEEcCCCCCeecCCCcCcCcChHHHHHHHHHHHH
Confidence 345667889999999999876555 4557766544
No 44
>COG0764 FabA 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) dehydratases [Lipid metabolism]
Probab=27.62 E-value=44 Score=21.87 Aligned_cols=26 Identities=19% Similarity=0.392 Sum_probs=21.3
Q ss_pred CCCCccCCccccccccCCCCHHHHHH
Q psy3051 66 PGITHWQSPHFHAFYPSASSFPSILG 91 (111)
Q Consensus 66 ~~~~~~~hPrf~~~v~~~~~~~s~la 91 (111)
-..+..++|-|-||+|+-|-.++++.
T Consensus 38 ~k~Vt~nepfF~gHFP~~PimPGVLi 63 (147)
T COG0764 38 IKNVTINEPFFTGHFPGDPIMPGVLI 63 (147)
T ss_pred EEccCCCCCeeCCcCCCCCCcchhHH
Confidence 33566789999999999999888774
No 45
>cd03063 TRX_Fd_FDH_beta TRX-like [2Fe-2S] Ferredoxin (Fd) family, NAD-dependent formate dehydrogenase (FDH) beta subunit; composed of proteins similar to the beta subunit of NAD-linked FDH of Ralstonia eutropha, a soluble enzyme that catalyzes the irreversible oxidation of formate to carbon dioxide accompanied by the reduction of NAD to NADH. FDH is a heteromeric enzyme composed of four nonidentical subunits (alpha, beta, gamma and delta). The FDH beta subunit contains a NADH:ubiquinone oxidoreductase (Nuo) F domain C-terminal to a Fd-like domain without the active site cysteines. The absence of conserved metal-binding residues in the putative active site suggests that members of this subfamily have lost the ability to bind iron-sulfur clusters in the N-terminal Fd-like domain. The C-terminal NuoF domain is a component of Nuo, a multisubunit complex catalyzing the electron transfer of NADH to quinone coupled with the transfer of protons across the membrane. NuoF contains one [4Fe-4S] c
Probab=26.94 E-value=75 Score=19.06 Aligned_cols=26 Identities=4% Similarity=-0.082 Sum_probs=16.5
Q ss_pred CHHHHHHHHHHhhcCCCCccCCccccccc
Q psy3051 52 DWRHIMRDMNTVIMPGITHWQSPHFHAFY 80 (111)
Q Consensus 52 ~~~~~l~~~~~~v~~~~~~~~hPrf~~~v 80 (111)
.++++-+-+.+++.. + ..||.|.|-+
T Consensus 66 ~~edv~~Iv~~~~~~-~--~~h~~~~g~~ 91 (92)
T cd03063 66 TPADVASLLDAGALE-G--GEHPLCLGLT 91 (92)
T ss_pred CHHHHHHHHHHHhhc-C--CcCchhcCCC
Confidence 455555555555543 2 6999999864
No 46
>TIGR03044 PS_II_psb27 photosystem II protein Psb27. Members of this family are the Psb27 protein of the cyanobacterial photosynthetic supracomplex, photosystem II. Although most protein components of both cyanobacterial and chloroplast versions of photosystem II are closely related and described together by single model families, this family is strictly bacterial. Some uncharacterized proteins with highly divergent sequences, from Arabidopsis, score between trusted and noise cutoffs for this model but are not at this time assigned as functionally equivalent photosystem II proteins.
Probab=26.69 E-value=97 Score=20.11 Aligned_cols=36 Identities=22% Similarity=0.162 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHhhccCCC-CCCCCChhHHhh
Q psy3051 5 EFREFGKAAIDFIADYHDTVRQRQ-VLPSVQPGYLAS 40 (111)
Q Consensus 5 ~~~~~~~~~~~~i~~~~~~~~~~p-v~~~~~p~~l~~ 40 (111)
++++...++-+.|.||+..-+.++ |..-.+...++.
T Consensus 60 ~~~~a~~~ar~~indyvsrYRr~~~v~g~~SFttm~T 96 (135)
T TIGR03044 60 NKSEAQAEARQLINDYISRYRRRPRVNGLSSFTTMQT 96 (135)
T ss_pred cHHHHHHHHHHHHHHHHHHhcCCCCcCCcccHHHHHH
Confidence 455666677777888877766543 444445555543
No 47
>cd08801 Death_UNC5D Death domain found in Uncoordinated-5D. Death Domain (DD) found in Uncoordinated-5D (UNC5D). UNC5D is part of the UNC-5 homolog family. It is a receptor for the secreted netrin-1 and plays a role in axonal guidance, angiogenesis, and apoptosis. UNC5 proteins are transmembrane proteins with an extracellular domain consisting of two immunoglobulin repeats, two thrombospondin type-I modules and an intracellular region containing a ZU-5 domain, UPA domain and a DD. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=26.60 E-value=34 Score=20.80 Aligned_cols=26 Identities=12% Similarity=0.133 Sum_probs=19.7
Q ss_pred ccccccccCCCCHHHHHHHHHHhhhCc
Q psy3051 74 PHFHAFYPSASSFPSILGELLSTGLGV 100 (111)
Q Consensus 74 Prf~~~v~~~~~~~s~lad~l~sa~N~ 100 (111)
-||++|+-..++|.+++=|+= .+-|+
T Consensus 33 DRyl~yFatk~SPT~viLdLW-Ea~~~ 58 (98)
T cd08801 33 DRNLSYFATQSSPSAVILSLW-EARHQ 58 (98)
T ss_pred hhHHHHHhcCCChHHHHHHHH-HHhcC
Confidence 469999999999999998764 33343
No 48
>PF00205 TPP_enzyme_M: Thiamine pyrophosphate enzyme, central domain; InterPro: IPR012000 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This central domain of TPP enzymes contains a 2-fold Rossman fold. ; GO: 0000287 magnesium ion binding, 0030976 thiamine pyrophosphate binding; PDB: 1OZH_C 1OZF_B 1OZG_B 2Q29_B 2Q28_A 2Q27_B 1OVM_B 1PVD_A 1PYD_B 2VK1_C ....
Probab=26.32 E-value=47 Score=20.68 Aligned_cols=22 Identities=18% Similarity=0.203 Sum_probs=14.6
Q ss_pred CCCCccCCccccccccCCCCHH
Q psy3051 66 PGITHWQSPHFHAFYPSASSFP 87 (111)
Q Consensus 66 ~~~~~~~hPrf~~~v~~~~~~~ 87 (111)
...+...||.|+|+....+.+.
T Consensus 49 kg~i~~~hp~~~G~~g~~~~~~ 70 (137)
T PF00205_consen 49 KGVIPEDHPLFLGYLGLFGSPA 70 (137)
T ss_dssp TTSSTTTSTTEEEESCGGSCHH
T ss_pred ccccCCCCchhcccCCccCCHH
Confidence 3456689999999555444443
No 49
>COG3752 Steroid 5-alpha reductase family enzyme [General function prediction only]
Probab=25.02 E-value=25 Score=25.36 Aligned_cols=30 Identities=13% Similarity=0.124 Sum_probs=20.5
Q ss_pred cCCccccccccCCCCHHHHHHHHHHhhhCcCCccccc
Q psy3051 71 WQSPHFHAFYPSASSFPSILGELLSTGLGVLSFTWSP 107 (111)
Q Consensus 71 ~~hPrf~~~v~~~~~~~s~lad~l~sa~N~~~~~~~~ 107 (111)
+.||+|||- ...+.|=+|.++ ++....|..
T Consensus 193 tRHPNYFgE------~l~Wwg~~Lia~-~~~~~~W~~ 222 (272)
T COG3752 193 TRHPNYFGE------ALVWWGFYLIAI-SEWLLLWAV 222 (272)
T ss_pred ccCcchHHH------HHHHHHHHHHHH-hhhhHhhhc
Confidence 679999984 456677677666 666666643
No 50
>TIGR02574 stabl_TIGR02574 putative addiction module component, TIGR02574 family. Members of this family are bacterial proteins, typically are about 75 amino acids long, always found as part of a pair (at least) of two small genes. The other in the pair always belongs to a subfamily of the larger family pfam05016 (although not necessarily scoring above the designated cutoff), which contains plasmid stabilization proteins. It is likely that this protein and its pfam05016 member partner comprise some form of addiction module, although these gene pairs usually are found on the bacterial main chromosome.
Probab=24.16 E-value=1.2e+02 Score=16.59 Aligned_cols=29 Identities=14% Similarity=0.307 Sum_probs=18.0
Q ss_pred ChhHHhhcCC--CCCCCCCcCHHHHHHHHHH
Q psy3051 34 QPGYLASLVP--GEMPEEGEDWRHIMRDMNT 62 (111)
Q Consensus 34 ~p~~l~~~~~--~~~p~~g~~~~~~l~~~~~ 62 (111)
..+++.+.+. ..=+..+.+.+++.+.+++
T Consensus 32 ~~~el~~R~~~~~~g~~~~i~~eev~~~ir~ 62 (63)
T TIGR02574 32 QKAELDRRLADYKADPSKASPWEEVRARIRK 62 (63)
T ss_pred HHHHHHHHHHHHHcCCcCCCCHHHHHHHHHc
Confidence 3445554442 2336678889999888764
No 51
>KOG0994|consensus
Probab=24.14 E-value=1.9e+02 Score=26.00 Aligned_cols=50 Identities=12% Similarity=0.248 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHhhccCCCCCCCCChhHHh----hcCCCCCCCCCcCHHHHHHHHHHhh
Q psy3051 8 EFGKAAIDFIADYHDTVRQRQVLPSVQPGYLA----SLVPGEMPEEGEDWRHIMRDMNTVI 64 (111)
Q Consensus 8 ~~~~~~~~~i~~~~~~~~~~pv~~~~~p~~l~----~~~~~~~p~~g~~~~~~l~~~~~~v 64 (111)
+.++++++.|.+|+.+. ..+|+.++ +.|..++|..+.-+..+..++.+.|
T Consensus 1471 ~el~~Li~~v~~Flt~~-------~adp~si~~vA~~vL~l~lp~tpeqi~~L~~~I~e~v 1524 (1758)
T KOG0994|consen 1471 RELRNLIQQVRDFLTQP-------DADPDSIEEVAEEVLALELPLTPEQIQQLTGEIQERV 1524 (1758)
T ss_pred HHHHHHHHHHHHHhcCC-------CCCHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHH
Confidence 33455555555555542 23455444 3567889999888888888887654
No 52
>PHA02515 hypothetical protein; Provisional
Probab=23.51 E-value=99 Score=23.75 Aligned_cols=17 Identities=6% Similarity=0.077 Sum_probs=9.6
Q ss_pred CCCCCCCCChhHHhhcC
Q psy3051 26 QRQVLPSVQPGYLASLV 42 (111)
Q Consensus 26 ~~pv~~~~~p~~l~~~~ 42 (111)
..|+.....|++|.+.+
T Consensus 130 kvPISsst~PdELL~~L 146 (508)
T PHA02515 130 QAPISGGLSSSEILEQL 146 (508)
T ss_pred eccccCCCCHHHHHHHH
Confidence 35666666666655443
No 53
>PRK14981 DNA-directed RNA polymerase subunit F; Provisional
Probab=23.41 E-value=88 Score=19.38 Aligned_cols=30 Identities=13% Similarity=0.129 Sum_probs=16.8
Q ss_pred CChhHHhhcCCCC-CCCCCcCHHHHHHHHHH
Q psy3051 33 VQPGYLASLVPGE-MPEEGEDWRHIMRDMNT 62 (111)
Q Consensus 33 ~~p~~l~~~~~~~-~p~~g~~~~~~l~~~~~ 62 (111)
.++++++.+++.. ..-.+..++++|+.+.+
T Consensus 79 ~~~dElrai~~~~~~~~~~e~l~~ILd~l~k 109 (112)
T PRK14981 79 ETRDELRAIFAKERYTLSPEELDEILDIVKK 109 (112)
T ss_pred CCHHHHHHHHHHhccCCCHHHHHHHHHHHHH
Confidence 3678888776432 22234456666666654
No 54
>COG0339 Dcp Zn-dependent oligopeptidases [Amino acid transport and metabolism]
Probab=22.91 E-value=1e+02 Score=25.38 Aligned_cols=41 Identities=15% Similarity=0.251 Sum_probs=28.8
Q ss_pred CCCCcCHHHHHHHHHHh--hcCCCCccCCccccccccCCCCHH
Q psy3051 47 PEEGEDWRHIMRDMNTV--IMPGITHWQSPHFHAFYPSASSFP 87 (111)
Q Consensus 47 p~~g~~~~~~l~~~~~~--v~~~~~~~~hPrf~~~v~~~~~~~ 87 (111)
|+...++.++.+++.+. +.+......-+.+|+||.+|+--+
T Consensus 570 ~~~~~~i~~~~~~~~~~~~v~~~~~~~~~~~~F~HIFagGYsA 612 (683)
T COG0339 570 PDANADILEFEAEVLKKVAVLPSIPPRRRPHSFGHIFAGGYSA 612 (683)
T ss_pred cccccCHHHHHHHHHHHhCCCCCcchhhccccccceecCcccc
Confidence 55677888888888765 333444456788999999976433
No 55
>PF05678 VQ: VQ motif; InterPro: IPR008889 This short motif is found in a variety of plant proteins. These proteins vary greatly in length and are mostly composed of low complexity regions. They all conserve a short motif FXhVQChTG, where X is any amino acid and h is a hydrophobic amino acid. The function of this motif is uncertain, however one protein in this family has been found to bind the SigA sigma factor Q9LDH1 from SWISSPROT. It would seem plausible that this motif is needed for this activity and that this whole family might be involved in modulating plastid sigma factors.
Probab=22.37 E-value=96 Score=14.71 Aligned_cols=12 Identities=17% Similarity=0.385 Sum_probs=7.3
Q ss_pred CHHHHHHHHHHH
Q psy3051 2 NSEEFREFGKAA 13 (111)
Q Consensus 2 ~~~~~~~~~~~~ 13 (111)
|..+||++.+++
T Consensus 11 d~~~Fr~lVQ~L 22 (31)
T PF05678_consen 11 DPSNFRALVQRL 22 (31)
T ss_pred CHHHHHHHHHHh
Confidence 456777665553
No 56
>cd08537 SAM_PNT-ESE-1-like Sterile alpha motif (SAM)/Pointed domain of ESE-1 like ETS transcriptional regulators. SAM Pointed domain of ESE-1-like (Epithelium-Specific ETS) subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. SAM Pointed domain of ESE-1 provides a potential docking site for signaling kinase Pak1 in humans. ESE-1 factors are involved in regulation of gene expression in different types of epithelial cells. ESE-1 is expressed in many different organs including intestine, stomach, pancreas, lungs, kidneys, and prostate. The DNA binding consensus motif for ESE-1 consists of a purine-rich GGA[AT] core sequence. The expression profile of these factors is altered in epithelial cancers if compared to normal tissues. Members of this subfamily are potential targets for cancer therapy.
Probab=22.23 E-value=87 Score=18.35 Aligned_cols=25 Identities=8% Similarity=-0.090 Sum_probs=15.0
Q ss_pred CCHHHHHHHHHHHHHHHHHHHhhcc
Q psy3051 1 MNSEEFREFGKAAIDFIADYHDTVR 25 (111)
Q Consensus 1 ~~~~~~~~~~~~~~~~i~~~~~~~~ 25 (111)
|..|+|+.++-.+=+.+.++++.++
T Consensus 51 l~~e~F~~~a~p~GdiLy~~L~~l~ 75 (78)
T cd08537 51 CALDQMRLVFGPLGDQLYAQLRELT 75 (78)
T ss_pred cCHHHHHHHcCChHHHHHHHHHHHh
Confidence 4566676655556666666666543
No 57
>TIGR03398 plc_access_R phospholipase C accessory protein PlcR. The class of microbial phosphocholine-preferring phospholipase C enzymes described by model TIGR03396 has two members in Pseudomonas aeruginosa, one of which (PlcH) is hemolytic and can hydrolyzes sphingomyelin as well as phosphatidylcholine. This model describes PlcR, an accessory protein for PlcH with which it forms a heterodimer. The member of the family from P. aeruginosa, although not the members from various Burkholderia species, is encoded immediately downstream of phospholipase C.
Probab=21.65 E-value=2.4e+02 Score=18.23 Aligned_cols=68 Identities=7% Similarity=-0.010 Sum_probs=35.5
Q ss_pred CCHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCChhHHhhcCCCCCCCCCcCHHHHHHHHHHhhcCCCCccC
Q psy3051 1 MNSEEFREFGKAAIDFIADYHDTVRQRQVLPSVQPGYLASLVPGEMPEEGEDWRHIMRDMNTVIMPGITHWQ 72 (111)
Q Consensus 1 ~~~~~~~~~~~~~~~~i~~~~~~~~~~pv~~~~~p~~l~~~~~~~~p~~g~~~~~~l~~~~~~v~~~~~~~~ 72 (111)
|+..+-..++..+++.+-++...-.-.|+ ..+.+...+-.....+...-+.++..+....-+|.+.+.
T Consensus 15 m~aaeR~a~Ar~llaqL~~~va~g~idPr----qa~~l~~~Ll~daeaDa~~R~Aa~~smr~~l~d~a~q~~ 82 (141)
T TIGR03398 15 MPAAERAALARGLLAQLPRHVARGEIDPR----QAEALSAALLPDAEADARTREAAIFSMRMQLDDYAVQTV 82 (141)
T ss_pred cCHHHHHHHHHHHHHHHHHHHhccCCChH----hHHHHHHHhccccccchhHHHHHHHHHHHHHHHHhcccC
Confidence 56667777788888888776654221222 334444443222222333334555555555555555544
No 58
>PF12010 DUF3502: Domain of unknown function (DUF3502); InterPro: IPR022627 This domain is about 140 amino acids in length and is functionally uncharacterised. It is found in bacteria C-terminal to PF01547 from PFAM.
Probab=21.48 E-value=91 Score=19.78 Aligned_cols=57 Identities=9% Similarity=0.179 Sum_probs=31.3
Q ss_pred CHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCChhHHhhcCCCCCCCCCcCHHHHHHHHHHhh
Q psy3051 2 NSEEFREFGKAAIDFIADYHDTVRQRQVLPSVQPGYLASLVPGEMPEEGEDWRHIMRDMNTVI 64 (111)
Q Consensus 2 ~~~~~~~~~~~~~~~i~~~~~~~~~~pv~~~~~p~~l~~~~~~~~p~~g~~~~~~l~~~~~~v 64 (111)
|.+.++.-+..+.....+|...+...-| +|++-...+...+-..| +++|+.++.+.+
T Consensus 70 D~s~Vk~Eiaa~~~v~~~Y~~~L~~G~v----d~e~~~~~~~~kLk~AG--idkV~~E~QkQl 126 (134)
T PF12010_consen 70 DPSPVKNEIAACSNVWSEYYPPLETGLV----DPEEALPEFNEKLKAAG--IDKVIAELQKQL 126 (134)
T ss_pred CCchhHHHHHHHHHHHHHHHHHHHccCC----CHHHHHHHHHHHHHHhC--hHHHHHHHHHHH
Confidence 3344555566666666667666654433 34443333333344444 778888887653
No 59
>PLN00061 photosystem II protein Psb27; Provisional
Probab=21.48 E-value=2.2e+02 Score=18.85 Aligned_cols=28 Identities=25% Similarity=0.404 Sum_probs=20.6
Q ss_pred CHHHHHHHHHHHHHHHHHHHhhccCCCC
Q psy3051 2 NSEEFREFGKAAIDFIADYHDTVRQRQV 29 (111)
Q Consensus 2 ~~~~~~~~~~~~~~~i~~~~~~~~~~pv 29 (111)
|.+.|++....+-+.|.+|+..-+.++.
T Consensus 77 D~~~~~~aa~~Ake~IndYisryR~~~~ 104 (150)
T PLN00061 77 DEAKFRRTADAAKESIREYLGNWRGQKT 104 (150)
T ss_pred chHHHHHHHHHHHHHHHHHHHHhcCCcc
Confidence 3456778888888899999888765443
No 60
>PF12162 STAT1_TAZ2bind: STAT1 TAZ2 binding domain; InterPro: IPR022752 This entry represents the C-terminal domain of STAT1, which selectively binds the TAZ2 domain of CRB (CREB-binding protein) []. This group of eukaryotic proteins is approximately 20 amino acids in length, and is found in association with PF02865 from PFAM, PF00017 from PFAM, PF01017 from PFAM, PF02864 from PFAM. By binding to CRB, it becomes a transcriptional activator and can initiate transcription of certain genes. ; GO: 0003700 sequence-specific DNA binding transcription factor activity; PDB: 2KA6_B.
Probab=21.32 E-value=98 Score=13.71 Aligned_cols=10 Identities=20% Similarity=0.687 Sum_probs=5.8
Q ss_pred CCHHHHHHHH
Q psy3051 1 MNSEEFREFG 10 (111)
Q Consensus 1 ~~~~~~~~~~ 10 (111)
|++|+|+++-
T Consensus 10 MSPddy~~l~ 19 (23)
T PF12162_consen 10 MSPDDYDELE 19 (23)
T ss_dssp S-HHHHHHHH
T ss_pred CCHHHHHHHH
Confidence 5677777653
No 61
>COG0783 Dps DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism]
Probab=20.73 E-value=2.7e+02 Score=18.45 Aligned_cols=55 Identities=18% Similarity=0.145 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCCCCCCCCChhHHhhcCC-CCCCCCCcCHHHHHHHHHH
Q psy3051 4 EEFREFGKAAIDFIADYHDTVRQRQVLPSVQPGYLASLVP-GEMPEEGEDWRHIMRDMNT 62 (111)
Q Consensus 4 ~~~~~~~~~~~~~i~~~~~~~~~~pv~~~~~p~~l~~~~~-~~~p~~g~~~~~~l~~~~~ 62 (111)
|++...+...+|-+.+.+..+...|+. +..+..+.-. ...|.. .+..+.++.+.+
T Consensus 54 ee~y~el~~~~DeiAERi~~LGg~p~~---t~~~~~~~s~ike~~~~-~~~~~~l~~l~~ 109 (156)
T COG0783 54 EELYEELAEHVDEIAERIRALGGVPLG---TLSEYLKLSSIKEEPGD-YTAREMLKELVE 109 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCcc---cHHHHHHhCCCcccCCC-CCHHHHHHHHHH
Confidence 456666777788888888887766553 4555544422 122222 445555555543
No 62
>PLN03032 serine decarboxylase; Provisional
Probab=20.68 E-value=1.5e+02 Score=22.42 Aligned_cols=12 Identities=0% Similarity=-0.172 Sum_probs=5.6
Q ss_pred HHHHHHHhhhCc
Q psy3051 89 ILGELLSTGLGV 100 (111)
Q Consensus 89 ~lad~l~sa~N~ 100 (111)
-+-+|++..++.
T Consensus 70 ~v~~~ia~llg~ 81 (374)
T PLN03032 70 GVLDWFARLWEL 81 (374)
T ss_pred HHHHHHHHHhCC
Confidence 334455555543
No 63
>cd01043 DPS DPS protein, ferritin-like diiron-binding domain. DPS (DNA Protecting protein under Starved conditions) domain is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. Some DPS proteins nonspecifically bind DNA, protecting it from cleavage caused by reactive oxygen species such as the hydroxyl radicals produced during oxidation of Fe(II) by hydrogen peroxide. These proteins assemble into dodecameric structures, some form DPS-DNA co-crystalline complexes, and possess iron and H2O2 detoxification capabilities. Expression of DPS is induced by oxidative or nutritional stress, including metal ion starvation. Members of the DPS family are homopolymers formed by 12 four-helix bundle subunits that assemble with 23 symmetry into a hollow shell. The DPS ferroxidase site is unusual in that it is not located in a four-helix bundle as in ferritin, but is shared by 2-fold symmetry-related subunits providing the iron ligands. Many DPS sequences (e.g., E. coli) disp
Probab=20.17 E-value=2.3e+02 Score=17.56 Aligned_cols=49 Identities=18% Similarity=0.108 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHhhccCCCCCCCCChhHHhhcCCC-CCCCCCcCHHHHHHHHHH
Q psy3051 11 KAAIDFIADYHDTVRQRQVLPSVQPGYLASLVPG-EMPEEGEDWRHIMRDMNT 62 (111)
Q Consensus 11 ~~~~~~i~~~~~~~~~~pv~~~~~p~~l~~~~~~-~~p~~g~~~~~~l~~~~~ 62 (111)
.+.+|.+.+.+..+...| ..+++++.+.-.. +.++.+.+..+.+..+.+
T Consensus 44 ~~~~D~lAERi~~lgg~P---~~~~~~~~~~s~l~~~~~~~~~~~~~l~~~~~ 93 (139)
T cd01043 44 REAIDEIAERIRALGGKP---LGTLKEYAELSTIKEEPAGVLSAKEMVAELLE 93 (139)
T ss_pred HHHHHHHHHHHHHcCCCC---CCCHHHHHhHCCCCCCCCCCCCHHHHHHHHHH
Confidence 344455555555555444 4467776654332 334456677777666554
Done!