Query psy3051
Match_columns 111
No_of_seqs 148 out of 1031
Neff 8.7
Searched_HMMs 29240
Date Sat Aug 17 00:27:17 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3051.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/3051hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3k40_A Aromatic-L-amino-acid d 99.9 9.3E-26 3.2E-30 169.1 10.7 110 1-110 1-110 (475)
2 4e1o_A HDC, histidine decarbox 99.9 6.2E-25 2.1E-29 164.7 11.0 110 1-110 6-115 (481)
3 1js3_A DDC;, DOPA decarboxylas 99.9 3.7E-22 1.3E-26 149.1 10.8 110 1-110 1-110 (486)
4 3vp6_A Glutamate decarboxylase 99.8 1.1E-20 3.9E-25 142.7 11.3 108 2-110 20-132 (511)
5 2okj_A Glutamate decarboxylase 99.8 8.4E-20 2.9E-24 137.1 11.3 109 1-110 16-129 (504)
6 2jis_A Cysteine sulfinic acid 99.8 3.9E-19 1.3E-23 134.0 9.5 109 1-110 34-145 (515)
7 2qma_A Diaminobutyrate-pyruvat 99.7 1.3E-17 4.5E-22 125.0 10.4 108 1-110 29-137 (497)
8 2dgk_A GAD-beta, GADB, glutama 98.4 2.2E-07 7.4E-12 68.6 4.8 72 34-110 6-78 (452)
9 3hbx_A GAD 1, glutamate decarb 97.2 0.00075 2.6E-08 50.6 6.1 76 31-110 16-92 (502)
10 3mc6_A Sphingosine-1-phosphate 97.1 0.00054 1.9E-08 50.8 4.6 68 43-110 35-104 (497)
11 3mad_A Sphingosine-1-phosphate 97.1 0.00016 5.3E-09 54.1 1.5 67 44-110 69-136 (514)
12 3bc8_A O-phosphoseryl-tRNA(SEC 96.8 0.00016 5.5E-09 54.1 -0.2 58 44-110 21-95 (450)
13 3f9t_A TDC, L-tyrosine decarbo 95.3 0.03 1E-06 39.4 5.4 57 45-104 4-60 (397)
14 3ip4_C Aspartyl/glutamyl-tRNA( 81.8 4.1 0.00014 23.9 5.2 49 12-60 30-81 (100)
15 3h0l_C Glutamyl-tRNA(Gln) amid 79.6 4.9 0.00017 23.3 5.0 48 12-60 28-78 (94)
16 3kfu_G Glutamyl-tRNA(Gln) amid 70.6 13 0.00044 21.4 5.8 46 12-60 32-77 (92)
17 2z67_A O-phosphoseryl-tRNA(SEC 64.0 4.8 0.00016 29.3 2.8 43 4-62 32-74 (456)
18 1wyu_A Glycine dehydrogenase ( 59.8 17 0.00058 26.1 5.1 44 34-84 30-73 (438)
19 2v9v_A Selenocysteine-specific 56.9 15 0.00053 21.9 3.9 55 3-62 61-115 (135)
20 3t3l_A Frataxin, mitochondrial 43.6 28 0.00097 21.4 3.5 26 1-26 9-34 (129)
21 1ew4_A CYAY protein; friedreic 39.9 40 0.0014 19.8 3.7 24 1-24 1-24 (106)
22 1wyu_B Glycine dehydrogenase s 38.4 65 0.0022 23.3 5.4 41 36-78 32-72 (474)
23 3g36_A Protein DPY-30 homolog; 36.2 23 0.00078 18.5 1.9 14 83-96 33-46 (55)
24 2ezv_A Type II restriction enz 32.8 1.1E+02 0.0039 20.5 5.8 29 53-81 50-79 (269)
25 4eve_A Neutrophil-activating p 31.4 97 0.0033 19.3 8.1 53 7-62 64-117 (164)
26 1go3_F DNA-directed RNA polyme 28.6 63 0.0022 19.0 3.2 28 33-62 78-105 (107)
27 4a25_A DPS, ferritin DPS famil 28.5 1.1E+02 0.0039 19.2 7.5 34 4-40 63-96 (169)
28 3esi_A Uncharacterized protein 27.9 25 0.00085 21.5 1.4 26 65-90 22-47 (129)
29 2d5k_A DPS, DPS family protein 26.1 1.2E+02 0.004 18.5 8.0 48 12-62 54-101 (156)
30 3al0_C Glutamyl-tRNA(Gln) amid 25.7 62 0.0021 25.0 3.5 13 14-26 33-45 (592)
31 1z21_A YOP proteins translocat 24.5 36 0.0012 20.3 1.5 58 7-66 29-86 (112)
32 1lva_A Selenocysteine-specific 24.3 93 0.0032 20.9 3.9 54 3-61 61-114 (258)
33 2ast_A S-phase kinase-associat 22.1 1.5E+02 0.005 18.3 4.7 29 11-44 112-140 (159)
34 1iio_A Conserved hypothetical 21.5 1.2E+02 0.0042 17.2 3.7 35 12-50 11-45 (84)
No 1
>3k40_A Aromatic-L-amino-acid decarboxylase; PLP dependent protein, alpha beta protein, alternative splicing, catecholamine biosynthesis, lyase; HET: LLP; 1.75A {Drosophila melanogaster} SCOP: c.67.1.6
Probab=99.93 E-value=9.3e-26 Score=169.09 Aligned_cols=110 Identities=46% Similarity=1.063 Sum_probs=107.6
Q ss_pred CCHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCChhHHhhcCCCCCCCCCcCHHHHHHHHHHhhcCCCCccCCccccccc
Q psy3051 1 MNSEEFREFGKAAIDFIADYHDTVRQRQVLPSVQPGYLASLVPGEMPEEGEDWRHIMRDMNTVIMPGITHWQSPHFHAFY 80 (111)
Q Consensus 1 ~~~~~~~~~~~~~~~~i~~~~~~~~~~pv~~~~~p~~l~~~~~~~~p~~g~~~~~~l~~~~~~v~~~~~~~~hPrf~~~v 80 (111)
||.++||+.++++++.+++|+++++++||.+.+.|+++++.++..+|++|.+.+++++++.+.++++.++|+|||||||+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~p~~l~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 80 (475)
T 3k40_A 1 MEAPEFKDFAKTMVDFIAEYLENIRERRVLPEVKPGYLKPLIPDAAPEKPEKWQDVMQDIERVIMPGVTHWHSPKFHAYF 80 (475)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHTGGGSCSSCSSCTTCSGGGSCSSCCSSCCCHHHHHHHHHHHTGGGCCCTTCTTBCCSS
T ss_pred CCHHHHHHHHHHHHHHHHHHHhccccCCCCCCCCHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHhccCCCCCCcCceeeC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHhhhCcCCcccccCCC
Q psy3051 81 PSASSFPSILGELLSTGLGVLSFTWSPHVG 110 (111)
Q Consensus 81 ~~~~~~~s~lad~l~sa~N~~~~~~~~spg 110 (111)
+++++++++++|+|++++|+++..|..+|+
T Consensus 81 ~~~~~~~~~~~~~l~~~~n~~~~~~~~~p~ 110 (475)
T 3k40_A 81 PTANSYPAIVADMLSGAIACIGFTWIASPA 110 (475)
T ss_dssp CCCCCHHHHHHHHHHHHHCCCSSSCCCCHH
T ss_pred CCCCcHHHHHHHHHHHHhCccccCccCCcH
Confidence 999999999999999999999999999986
No 2
>4e1o_A HDC, histidine decarboxylase; lyase; HET: PLP PVH; 1.80A {Homo sapiens}
Probab=99.92 E-value=6.2e-25 Score=164.65 Aligned_cols=110 Identities=46% Similarity=1.019 Sum_probs=107.3
Q ss_pred CCHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCChhHHhhcCCCCCCCCCcCHHHHHHHHHHhhcCCCCccCCccccccc
Q psy3051 1 MNSEEFREFGKAAIDFIADYHDTVRQRQVLPSVQPGYLASLVPGEMPEEGEDWRHIMRDMNTVIMPGITHWQSPHFHAFY 80 (111)
Q Consensus 1 ~~~~~~~~~~~~~~~~i~~~~~~~~~~pv~~~~~p~~l~~~~~~~~p~~g~~~~~~l~~~~~~v~~~~~~~~hPrf~~~v 80 (111)
||.++||+.++++++.+.+|+++++++||.+.+.|+++++.++..+|++|.+.+++++++.+.++++.++|+|||||||+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 85 (481)
T 4e1o_A 6 MEPEEYRERGREMVDYICQYLSTVRERRVTPDVQPGYLRAQLPESAPEDPDSWDSIFGDIERIIMPGVVHWQSPHMHAYY 85 (481)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHSGGGSCSSCCCCTTTTGGGSCSSCCSSCCCHHHHHHHHHHHTGGGCCCTTSTTBCSSS
T ss_pred CCHHHHHHHHHHHHHHHHHHHhccccCCCCCCCCHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHhcCCCCCCCCCeeEeC
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHhhhCcCCcccccCCC
Q psy3051 81 PSASSFPSILGELLSTGLGVLSFTWSPHVG 110 (111)
Q Consensus 81 ~~~~~~~s~lad~l~sa~N~~~~~~~~spg 110 (111)
+++++++++++|++++++|+++..|..+|+
T Consensus 86 ~~~~~~~~~~~~~~~~~~n~~~~~~~~~p~ 115 (481)
T 4e1o_A 86 PALTSWPSLLGDMLADAINCLGFTWASSPA 115 (481)
T ss_dssp CCCCCHHHHHHHHHHHHHCCCCSSTTTCHH
T ss_pred CCCCCHHHHHHHHHHHHhCcccCCcCCCcH
Confidence 999999999999999999999999999986
No 3
>1js3_A DDC;, DOPA decarboxylase; carbidopa, parkinson'S disease, vitamin; HET: PLP 142; 2.25A {Sus scrofa} SCOP: c.67.1.6 PDB: 1js6_A* 3rch_A* 3rbl_A 3rbf_A*
Probab=99.87 E-value=3.7e-22 Score=149.12 Aligned_cols=110 Identities=43% Similarity=0.976 Sum_probs=106.3
Q ss_pred CCHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCChhHHhhcCCCCCCCCCcCHHHHHHHHHHhhcCCCCccCCccccccc
Q psy3051 1 MNSEEFREFGKAAIDFIADYHDTVRQRQVLPSVQPGYLASLVPGEMPEEGEDWRHIMRDMNTVIMPGITHWQSPHFHAFY 80 (111)
Q Consensus 1 ~~~~~~~~~~~~~~~~i~~~~~~~~~~pv~~~~~p~~l~~~~~~~~p~~g~~~~~~l~~~~~~v~~~~~~~~hPrf~~~v 80 (111)
||.++||++++++++.+.+|+++++++||.+...|+++++.++..+|++|.+.+++++++.+.+.++.++++||+||||+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 80 (486)
T 1js3_A 1 MNASDFRRRGKEMVDYMADYLEGIEGRQVYPDVQPGYLRPLIPATAPQEPDTFEDILQDVEKIIMPGVTHWHSPYFFAYF 80 (486)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHTGGGSCSSCCCCTTCSGGGSCSSCCSSCCCHHHHHHHHHHTTGGGCCCTTSTTBCSSS
T ss_pred CCHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCHHHHHHhccccCCCCCCCHHHHHHHHHHHHhcCCCCCCCCCceEeC
Confidence 89999999999999999999999999999999999999999999999999999999999999899999999999999999
Q ss_pred cCCCCHHHHHHHHHHhhhCcCCcccccCCC
Q psy3051 81 PSASSFPSILGELLSTGLGVLSFTWSPHVG 110 (111)
Q Consensus 81 ~~~~~~~s~lad~l~sa~N~~~~~~~~spg 110 (111)
++++++++.++|++++++|++...|..+|+
T Consensus 81 ~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~ 110 (486)
T 1js3_A 81 PTASSYPAMLADMLCGAIGCIGFSWAASPA 110 (486)
T ss_dssp CCCCCHHHHHHHHHHHHHCCCCSSGGGCHH
T ss_pred CCCCCHHHHHHHHHHHHhCcCccccccChh
Confidence 999999999999999999999999998874
No 4
>3vp6_A Glutamate decarboxylase 1; catalytic loop SWAP, lyase; HET: LLP HLD; 2.10A {Homo sapiens} PDB: 2okj_A* 2okk_A*
Probab=99.84 E-value=1.1e-20 Score=142.68 Aligned_cols=108 Identities=19% Similarity=0.209 Sum_probs=99.7
Q ss_pred CHHHHHHHHHHHHHHHHHHHhhccCC--CCCCCCChhHHhhc---CCCCCCCCCcCHHHHHHHHHHhhcCCCCccCCccc
Q psy3051 2 NSEEFREFGKAAIDFIADYHDTVRQR--QVLPSVQPGYLASL---VPGEMPEEGEDWRHIMRDMNTVIMPGITHWQSPHF 76 (111)
Q Consensus 2 ~~~~~~~~~~~~~~~i~~~~~~~~~~--pv~~~~~p~~l~~~---~~~~~p~~g~~~~~~l~~~~~~v~~~~~~~~hPrf 76 (111)
+.+++|++++++++.+++|++++.++ +|++...|++++.. ++.++|++|.+.+++++++.+ ++.+.++++||||
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~-~~~~~~~~~~p~f 98 (511)
T 3vp6_A 20 GEEQTVQFLLEVVDILLNYVRKTFDRSTKVLDFHHPHQLLEGMEGFNLELSDHPESLEQILVDCRD-TLKYGVRTGHPRF 98 (511)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHTCTTSCSCCCCCHHHHHHCBTTBCCCCCSSCCCHHHHHHHHHH-HHHTSCCTTSTTE
T ss_pred ChHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCHHHHHHHHhhCCCCCCCCCCCHHHHHHHHHH-HhhccCCCCCCCc
Confidence 46789999999999999999997654 57888999999999 889999999999999999997 5677899999999
Q ss_pred cccccCCCCHHHHHHHHHHhhhCcCCcccccCCC
Q psy3051 77 HAFYPSASSFPSILGELLSTGLGVLSFTWSPHVG 110 (111)
Q Consensus 77 ~~~v~~~~~~~s~lad~l~sa~N~~~~~~~~spg 110 (111)
|||++++.+++++++|++++++|++...|..+|+
T Consensus 99 ~~~~~~~~~~~~~~~e~l~~~~~~~~~~~~~~p~ 132 (511)
T 3vp6_A 99 FNQLSTGLDIIGLAGEWLTSTANTNMFTYEIAPV 132 (511)
T ss_dssp ESSSSCCCCHHHHHHHHHHHHHCCCSSCTTTCHH
T ss_pred eEeecCCCcHHHHHHHHHHHHhccCCCCcccCch
Confidence 9999999999999999999999999999999885
No 5
>2okj_A Glutamate decarboxylase 1; PLP-dependent decarboxylase, lyase; HET: LLP PLZ; 2.30A {Homo sapiens} PDB: 2okk_A*
Probab=99.82 E-value=8.4e-20 Score=137.08 Aligned_cols=109 Identities=17% Similarity=0.186 Sum_probs=101.3
Q ss_pred CCHHHHHHHHHHHHHHHHHHHhhccC--CCCCCCCChhHHhhc---CCCCCCCCCcCHHHHHHHHHHhhcCCCCccCCcc
Q psy3051 1 MNSEEFREFGKAAIDFIADYHDTVRQ--RQVLPSVQPGYLASL---VPGEMPEEGEDWRHIMRDMNTVIMPGITHWQSPH 75 (111)
Q Consensus 1 ~~~~~~~~~~~~~~~~i~~~~~~~~~--~pv~~~~~p~~l~~~---~~~~~p~~g~~~~~~l~~~~~~v~~~~~~~~hPr 75 (111)
|+.+++|++++++++++.+|++++.+ ++|.+.+.|+++++. ++..+|++|.+.+++++++.+ ++.+.++++||+
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~-~~~~~~~~~~p~ 94 (504)
T 2okj_A 16 NGEEQTVQFLLEVVDILLNYVRKTFDRSTKVLDFHHPHQLLEGMEGFNLELSDHPESLEQILVDCRD-TLKYGVRTGHPR 94 (504)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHTCTTSCSCCCCCHHHHHSCBTTBCCCCCSSCCCHHHHHHHHHH-HHHTSCCTTCTT
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCHHHHHHHhhccCCCCCCCCCCHHHHHHHHHH-HhhccCCCCCCC
Confidence 78999999999999999999999766 459999999999999 899999999999999999986 678888888999
Q ss_pred ccccccCCCCHHHHHHHHHHhhhCcCCcccccCCC
Q psy3051 76 FHAFYPSASSFPSILGELLSTGLGVLSFTWSPHVG 110 (111)
Q Consensus 76 f~~~v~~~~~~~s~lad~l~sa~N~~~~~~~~spg 110 (111)
||+|++++..+.++++|++++++|+++++|..+|+
T Consensus 95 ~~~~~~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~ 129 (504)
T 2okj_A 95 FFNQLSTGLDIIGLAGEWLTSTANTNMFTYEIAPV 129 (504)
T ss_dssp EESSSSCCCCHHHHHHHHHHHHHCCBSSCTTTCHH
T ss_pred EEEEccCCCCHHHHHHHHHHHhhccCCCchhhChH
Confidence 99999999999999999999999999999998874
No 6
>2jis_A Cysteine sulfinic acid decarboxylase; pyridoxal phosphate, alternative splicing, pyridoxal phosphate (PLP), structural genomics consortium (SGC); HET: PLP; 1.6A {Homo sapiens}
Probab=99.79 E-value=3.9e-19 Score=133.96 Aligned_cols=109 Identities=15% Similarity=0.189 Sum_probs=101.5
Q ss_pred CCHHHHHHHHHHHHHHHHH-HHhhccC--CCCCCCCChhHHhhcCCCCCCCCCcCHHHHHHHHHHhhcCCCCccCCcccc
Q psy3051 1 MNSEEFREFGKAAIDFIAD-YHDTVRQ--RQVLPSVQPGYLASLVPGEMPEEGEDWRHIMRDMNTVIMPGITHWQSPHFH 77 (111)
Q Consensus 1 ~~~~~~~~~~~~~~~~i~~-~~~~~~~--~pv~~~~~p~~l~~~~~~~~p~~g~~~~~~l~~~~~~v~~~~~~~~hPrf~ 77 (111)
||.+++|++++++++++++ |+++..+ +||.+...|++++..++..+|++|.+.+++++++.+ ++.+.++++||+||
T Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~p~~l~~~~~~~~p~~~~~~~~~~~~~~~-~~~~~~~~~~p~~~ 112 (515)
T 2jis_A 34 GDPVAVEALLRAVFGVVVDEAIQKGTSVSQKVCEWKEPEELKQLLDLELRSQGESQKQILERCRA-VIRYSVKTGHPRFF 112 (515)
T ss_dssp CCHHHHHHHHHHHHHHHHHHTTTGGGCTTSCSCCCCCHHHHHHHHCCCCCSSCCCHHHHHHHHHH-HHHHSCCTTSTTEE
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCCCCHHHHHhhcccCCCCCCCCHHHHHHHHHH-HhcCCCCCCCCCeE
Confidence 6899999999999999999 9998764 499999999999999999999999999999999986 67788888899999
Q ss_pred ccccCCCCHHHHHHHHHHhhhCcCCcccccCCC
Q psy3051 78 AFYPSASSFPSILGELLSTGLGVLSFTWSPHVG 110 (111)
Q Consensus 78 ~~v~~~~~~~s~lad~l~sa~N~~~~~~~~spg 110 (111)
+|++++..+.++++|++++..|++.+.|..+|+
T Consensus 113 ~~~~~~~~~~~~~~~~l~~~~n~~~~~~~~s~~ 145 (515)
T 2jis_A 113 NQLFSGLDPHALAGRIITESLNTSQYTYEIAPV 145 (515)
T ss_dssp SSSCCCCCHHHHHHHHHHHHHCCCTTCTTTCHH
T ss_pred EEeeCCCCHHHHHHHHHHHHhccCCCchhhchH
Confidence 999999999999999999999999999998875
No 7
>2qma_A Diaminobutyrate-pyruvate transaminase and L-2,4- diaminobutyrate decarboxylase; structural genomics, APC91511.1, glutamate decarboxylase; HET: MSE; 1.81A {Vibrio parahaemolyticus}
Probab=99.74 E-value=1.3e-17 Score=124.99 Aligned_cols=108 Identities=13% Similarity=0.257 Sum_probs=99.3
Q ss_pred CCHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCChhHHhhcCCC-CCCCCCcCHHHHHHHHHHhhcCCCCccCCcccccc
Q psy3051 1 MNSEEFREFGKAAIDFIADYHDTVRQRQVLPSVQPGYLASLVPG-EMPEEGEDWRHIMRDMNTVIMPGITHWQSPHFHAF 79 (111)
Q Consensus 1 ~~~~~~~~~~~~~~~~i~~~~~~~~~~pv~~~~~p~~l~~~~~~-~~p~~g~~~~~~l~~~~~~v~~~~~~~~hPrf~~~ 79 (111)
++.++||+.++++++.+.+|+++.+ + +++...|+++++.++. .+|++|.+.+++++++.+.++++.++++||+||+|
T Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~ 106 (497)
T 2qma_A 29 LGSAEFASVMSHTTSAMKSVFEQVN-A-PYSGMDPKALEDAINAVDLDNKNAPLKSVIDDVAELVAKNAIFTQHPDCIAH 106 (497)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHHHCC-S-SSCCCCHHHHHHHHHTCCSSSCCCCHHHHHHHHHHHTTTTSCCTTSTTBCSS
T ss_pred CCHHHHHHHHHHHHHHHHHHHhhcc-C-CCCCCCHHHHHHhccccCCCCCCCCHHHHHHHHHHHHhcCCCCCCCCCeeEe
Confidence 4778999999999999999999873 3 4788889999998876 57999999999999999999999999999999999
Q ss_pred ccCCCCHHHHHHHHHHhhhCcCCcccccCCC
Q psy3051 80 YPSASSFPSILGELLSTGLGVLSFTWSPHVG 110 (111)
Q Consensus 80 v~~~~~~~s~lad~l~sa~N~~~~~~~~spg 110 (111)
+.++..+.+++++++..++|++...|..+|+
T Consensus 107 ~~~~~~~~~v~~~~~~~~~n~~~~~~~~~~~ 137 (497)
T 2qma_A 107 LHTPPLMPAVAAEAMIAALNQSMDSWDQASS 137 (497)
T ss_dssp SCCCCBHHHHHHHHHHHHHCCCTTCGGGCHH
T ss_pred CCCCCcHHHHHHHHHHHhhcccccchhhChH
Confidence 9999999999999999999999999998874
No 8
>2dgk_A GAD-beta, GADB, glutamate decarboxylase beta; gadbd1-14, autoinhibition, substituted aldamine, lyase; HET: PLP; 1.90A {Escherichia coli} PDB: 2dgm_A* 1pmo_A* 2dgl_A* 1pmm_A* 3fz6_A* 3fz7_A 3fz8_A* 1xey_A*
Probab=98.42 E-value=2.2e-07 Score=68.59 Aligned_cols=72 Identities=7% Similarity=-0.024 Sum_probs=54.2
Q ss_pred ChhHHhhcCCCCCCCCCcCHHHHHHHHHHhh-cCCCCccCCccccccccCCCCHHHHHHHHHHhhhCcCCcccccCCC
Q psy3051 34 QPGYLASLVPGEMPEEGEDWRHIMRDMNTVI-MPGITHWQSPHFHAFYPSASSFPSILGELLSTGLGVLSFTWSPHVG 110 (111)
Q Consensus 34 ~p~~l~~~~~~~~p~~g~~~~~~l~~~~~~v-~~~~~~~~hPrf~~~v~~~~~~~s~lad~l~sa~N~~~~~~~~spg 110 (111)
+...++.+++..+|++|.+.+++++++.+.+ .++..+++||+|++ .... ..++|+++.++|++...|..+|+
T Consensus 6 ~~~~~~~~~~~~lp~~g~~~~~v~~~~~~~~~~~~~~~~~~~~f~~---~~~~--~~v~e~~~~a~~~~~~~~~~~~~ 78 (452)
T 2dgk_A 6 AKSISTIAESKRFPLHEMRDDVAFQIINDELYLDGNARQNLATFCQ---TWDD--ENVHKLMDLSINKNWIDKEEYPQ 78 (452)
T ss_dssp ---------CCSCCCSCCCHHHHHHHHHHHGGGSCCCTTBCSCCSC---CCCC--HHHHHHHHHTTTCBTTCTTTCHH
T ss_pred chHHhhhccCCCCCCCCCCHHHHHHHHHHHhcCCCCCccCCCCeeC---CCch--HHHHHHHHHHhccCCCChhhChh
Confidence 4456677888899999999999999999987 68888999999997 2222 45899999999999888888775
No 9
>3hbx_A GAD 1, glutamate decarboxylase 1; calmodulin-binding, lyase, pyridoxal phosphate; HET: LLP; 2.67A {Arabidopsis thaliana}
Probab=97.18 E-value=0.00075 Score=50.60 Aligned_cols=76 Identities=12% Similarity=0.107 Sum_probs=57.6
Q ss_pred CCCChhHHhhcCCC-CCCCCCcCHHHHHHHHHHhhcCCCCccCCccccccccCCCCHHHHHHHHHHhhhCcCCcccccCC
Q psy3051 31 PSVQPGYLASLVPG-EMPEEGEDWRHIMRDMNTVIMPGITHWQSPHFHAFYPSASSFPSILGELLSTGLGVLSFTWSPHV 109 (111)
Q Consensus 31 ~~~~p~~l~~~~~~-~~p~~g~~~~~~l~~~~~~v~~~~~~~~hPrf~~~v~~~~~~~s~lad~l~sa~N~~~~~~~~sp 109 (111)
+...+..+++.++. .+|++|.+.+++++.+.+.+. ..+||+|+..-.++..+...+.+++..++|++...|..+|
T Consensus 16 ~~~~~~~~~~~lp~~~~p~~~~~~~~~~~~~~~~i~----l~gnp~~~l~s~~t~~~~~~v~~~l~~~~~~~~~~~~~~p 91 (502)
T 3hbx_A 16 STFASRYVRTSLPRFKMPENSIPKEAAYQIINDELM----LDGNPRLNLASFVTTWMEPECDKLIMSSINKNYVDMDEYP 91 (502)
T ss_dssp CTTTSSGGGSCCCSSSCCSSCCCHHHHHHHHHHHGG----GSCCGGGBTTCCSCCCCCHHHHHHHHHTTTCBTTCTTTCH
T ss_pred ccccchhhhhhccCCCCCCCCCCHHHHHHHHHHHhc----cCCCCCceeccccCCCCCHHHHHHHHHHhccCCCChhcCh
Confidence 33456788888876 899999999999999998664 2478996543333333444689999999999998888776
Q ss_pred C
Q psy3051 110 G 110 (111)
Q Consensus 110 g 110 (111)
+
T Consensus 92 ~ 92 (502)
T 3hbx_A 92 V 92 (502)
T ss_dssp H
T ss_pred h
Confidence 4
No 10
>3mc6_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxyl phosphate; HET: LLP; 3.15A {Saccharomyces cerevisiae}
Probab=97.10 E-value=0.00054 Score=50.80 Aligned_cols=68 Identities=7% Similarity=0.030 Sum_probs=48.9
Q ss_pred CCCCCCCCcCHHHHHHHHHHhhcC-CCCccCCccccccccCCC-CHHHHHHHHHHhhhCcCCcccccCCC
Q psy3051 43 PGEMPEEGEDWRHIMRDMNTVIMP-GITHWQSPHFHAFYPSAS-SFPSILGELLSTGLGVLSFTWSPHVG 110 (111)
Q Consensus 43 ~~~~p~~g~~~~~~l~~~~~~v~~-~~~~~~hPrf~~~v~~~~-~~~s~lad~l~sa~N~~~~~~~~spg 110 (111)
...+|++|.+.+++++++.+.... ..+.+.||+|+|++..++ ....++.+.+....+.+...|..+||
T Consensus 35 ~~~lp~~g~~~~~i~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (497)
T 3mc6_A 35 FPQLPSNGIPQDDVIEELNKLNDLIPHTQWKEGKVSGAVYHGGDDLIHLQTIAYEKYCVANQLHPDVFPA 104 (497)
T ss_dssp CSSCCSSCCCHHHHHHHHHHHHHSSCCCCGGGTCBSSSCSCCCHHHHHHHHHHHHHTSSCBTTCTTTCHH
T ss_pred ccCCCCCCCCHHHHHHHHHHHhhhcCCCCCCCCCEeeecCCCchHHHHHHHHHHHHHhhcCCCCcccChH
Confidence 357999999999999999986542 578899999999976654 33344455554444446677777664
No 11
>3mad_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxal phosphate; HET: LLP; 2.00A {Symbiobacterium thermophilum} PDB: 3maf_A* 3mau_A* 3mbb_A*
Probab=97.07 E-value=0.00016 Score=54.13 Aligned_cols=67 Identities=9% Similarity=0.079 Sum_probs=57.3
Q ss_pred CCCCCCCcCHHHHHHHHHHhhcCCCCccCCccccccccC-CCCHHHHHHHHHHhhhCcCCcccccCCC
Q psy3051 44 GEMPEEGEDWRHIMRDMNTVIMPGITHWQSPHFHAFYPS-ASSFPSILGELLSTGLGVLSFTWSPHVG 110 (111)
Q Consensus 44 ~~~p~~g~~~~~~l~~~~~~v~~~~~~~~hPrf~~~v~~-~~~~~s~lad~l~sa~N~~~~~~~~spg 110 (111)
..+|++|.+.+++++++.+.+.++.+.+.||+|+|++.. .+.....+.+.+....|.+...|..+|+
T Consensus 69 ~~lp~~g~~~~~i~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 136 (514)
T 3mad_A 69 ARLPRAGLPRAEILAEIAAMGAAESPAWRDGYASGAVYHGDEHHIAFLNEVYALQSQSNPLHPDLWPS 136 (514)
T ss_dssp SSCCSSCCCHHHHHHHHHHHHHHHHHHHHTTCBSSSCSCCCHHHHHHHHHHHHHHTTCCTTCTTTCHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHhccCCCCCCCceEEEecCCCCCHHHHHHHHHHHHhhcCCcccccChH
Confidence 568999999999999999887888899999999999865 4667788999999999988887776654
No 12
>3bc8_A O-phosphoseryl-tRNA(SEC) selenium transferase; disorder-order transition, phosphate-loop, pyridoxal phospha selenocysteine synthase (SECS, sepsecs); HET: LLP; 1.65A {Mus musculus} SCOP: c.67.1.9 PDB: 3bca_A* 3bcb_A*
Probab=96.83 E-value=0.00016 Score=54.12 Aligned_cols=58 Identities=14% Similarity=0.128 Sum_probs=34.9
Q ss_pred CCCCCCCcCHHHHHHHHHHhhcC---------------CCCc--cCCccccccccCCCCHHHHHHHHHHhhhCcCCcccc
Q psy3051 44 GEMPEEGEDWRHIMRDMNTVIMP---------------GITH--WQSPHFHAFYPSASSFPSILGELLSTGLGVLSFTWS 106 (111)
Q Consensus 44 ~~~p~~g~~~~~~l~~~~~~v~~---------------~~~~--~~hPrf~~~v~~~~~~~s~lad~l~sa~N~~~~~~~ 106 (111)
..+|++|.+-++|..++.+.-.- +.+- ..-||||||++|+ +++||||++ | . .|.
T Consensus 21 ~~~p~~g~~~~~i~~~l~~~~~~d~~~~~~~~~~geregrv~~~~~~~r~~g~~hg~----~~~~d~l~~--~--~-~~~ 91 (450)
T 3bc8_A 21 GKCPEDGWDESTLELFLHELAVMDSNNFLGNCGVGEREGRVASALVARRHYRFIHGI----GRSGDISAV--Q--P-KAA 91 (450)
T ss_dssp CCCCSSCCCHHHHHHHHHHHHHTBGGGCTTCCCCSSCCCCCSCHHHHHHTTTCCSCB----CC---------C--C-SBH
T ss_pred ccCCccCCCHHHHHHHHHHHhhCCCCccccccccCcccceEecccccCCccceecch----hHHHHHHHh--C--c-ccc
Confidence 46899999999988888863221 1111 2258999999998 778899988 3 2 566
Q ss_pred cCCC
Q psy3051 107 PHVG 110 (111)
Q Consensus 107 ~spg 110 (111)
.+|+
T Consensus 92 ~~~~ 95 (450)
T 3bc8_A 92 GSSL 95 (450)
T ss_dssp HHHH
T ss_pred CCcH
Confidence 6553
No 13
>3f9t_A TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L-tyrosine decarboxylase MFNA (EC 4.1.1.25), ST genomics; HET: PLP; 2.11A {Methanocaldococcus jannaschii}
Probab=95.34 E-value=0.03 Score=39.39 Aligned_cols=57 Identities=11% Similarity=0.010 Sum_probs=45.3
Q ss_pred CCCCCCcCHHHHHHHHHHhhcCCCCccCCccccccccCCCCHHHHHHHHHHhhhCcCCcc
Q psy3051 45 EMPEEGEDWRHIMRDMNTVIMPGITHWQSPHFHAFYPSASSFPSILGELLSTGLGVLSFT 104 (111)
Q Consensus 45 ~~p~~g~~~~~~l~~~~~~v~~~~~~~~hPrf~~~v~~~~~~~s~lad~l~sa~N~~~~~ 104 (111)
.+|+.|.+.+++++++.+ +.+....+.+|+|+|+..+++.+. +.+.+...+....+.
T Consensus 4 ~lp~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~--v~~a~~~~~~~~~~~ 60 (397)
T 3f9t_A 4 NMQEKGVSEKEILEELKK-YRSLDLKYEDGNIFGSMCSNVLPI--TRKIVDIFLETNLGD 60 (397)
T ss_dssp SCCSSCCCHHHHHHHHHH-HHTTSCCGGGTCBCSCSCCCCCTH--HHHHHHHHTTCCTTS
T ss_pred cCCCCCCCHHHHHHHHHH-hhccCCCCCCCCeEEEecCCCcHH--HHHHHHHHHhhcCCC
Confidence 479999999999999997 568888889999999998887764 456666666654433
No 14
>3ip4_C Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase; multi protein complex, ligase, ATP-binding, nucleotide-bindi protein biosynthesis; 1.90A {Staphylococcus aureus subsp} SCOP: a.137.12.1 PDB: 2df4_C 2dqn_C* 2g5h_C 2g5i_C* 2f2a_C
Probab=81.75 E-value=4.1 Score=23.92 Aligned_cols=49 Identities=12% Similarity=0.173 Sum_probs=31.7
Q ss_pred HHHHHHHHHHhhccC---CCCCCCCChhHHhhcCCCCCCCCCcCHHHHHHHH
Q psy3051 12 AAIDFIADYHDTVRQ---RQVLPSVQPGYLASLVPGEMPEEGEDWRHIMRDM 60 (111)
Q Consensus 12 ~~~~~i~~~~~~~~~---~pv~~~~~p~~l~~~~~~~~p~~g~~~~~~l~~~ 60 (111)
.-++.|.+|++.+.. ..|-|-..+-++...++.+.+..+..-+++|+..
T Consensus 30 ~~l~~Il~~ve~L~evDt~~VeP~~~~~~~~~~lReD~v~~~~~~e~~L~nA 81 (100)
T 3ip4_C 30 NTLESILDFAKQNDSADTEGVEPTYHVLDLQNVLREDKAIKGIPQELALKNA 81 (100)
T ss_dssp HHHHHHHHHHGGGGGSCCTTCCCCSCCSCCCCCCBCSCCCCCCCHHHHHTTC
T ss_pred HHHHHHHHHHHHHhhcCCCCCCcccccccccCCCCCCCCCCCCCHHHHHHcC
Confidence 335667777777653 3344444555566778888888888877766544
No 15
>3h0l_C Glutamyl-tRNA(Gln) amidotransferase subunit C; multi protein complex, ligase, protein biosynthesis; HET: ADP; 2.30A {Aquifex aeolicus} PDB: 3h0m_C 3h0r_C*
Probab=79.58 E-value=4.9 Score=23.27 Aligned_cols=48 Identities=17% Similarity=0.226 Sum_probs=31.3
Q ss_pred HHHHHHHHHHhhccC---CCCCCCCChhHHhhcCCCCCCCCCcCHHHHHHHH
Q psy3051 12 AAIDFIADYHDTVRQ---RQVLPSVQPGYLASLVPGEMPEEGEDWRHIMRDM 60 (111)
Q Consensus 12 ~~~~~i~~~~~~~~~---~pv~~~~~p~~l~~~~~~~~p~~g~~~~~~l~~~ 60 (111)
.-++.|.+|++.+.+ ..|-|-..+-+. ..++.+.+..+..-+++|+..
T Consensus 28 ~~l~~Il~~ve~L~evDt~~VeP~~~~~~~-~~lReD~v~~~~~~e~~L~nA 78 (94)
T 3h0l_C 28 KQLSDILDFIDQLKELDTENVEPYIQEFEE-TPMREDEPHPSLDREKALMNA 78 (94)
T ss_dssp HHHHHHHHHTTTGGGSCCTTCCCCCCCCSS-CCCBCSCCCCCCCHHHHHTTC
T ss_pred HHHHHHHHHHHHHhccCCCCcCcccCcccc-cCCCCCCCCCCCCHHHHHHcC
Confidence 335667777776653 344444455556 888888888888877766543
No 16
>3kfu_G Glutamyl-tRNA(Gln) amidotransferase subunit C; ASPRS, gatcab, ATP-binding, aminoacyl-tRNA synthetase, ligas nucleotide-binding, protein biosynthesis, ligase-RNA comple; HET: H2U 5MU PSU; 3.00A {Thermus thermophilus}
Probab=70.59 E-value=13 Score=21.39 Aligned_cols=46 Identities=9% Similarity=0.079 Sum_probs=30.0
Q ss_pred HHHHHHHHHHhhccCCCCCCCCChhHHhhcCCCCCCCCCcCHHHHHHHH
Q psy3051 12 AAIDFIADYHDTVRQRQVLPSVQPGYLASLVPGEMPEEGEDWRHIMRDM 60 (111)
Q Consensus 12 ~~~~~i~~~~~~~~~~pv~~~~~p~~l~~~~~~~~p~~g~~~~~~l~~~ 60 (111)
.-++.|.+|++.+.+-.+ ..+.| ....++.+.+..+..-+++|+..
T Consensus 32 ~~l~~Il~~ve~L~evDt-~~VeP--~~~~lReD~v~~~~~~e~~L~nA 77 (92)
T 3kfu_G 32 QDLKRILDFVDALPRVEE-GGAEE--ALGRLREDEPRPSLPQAEALALA 77 (92)
T ss_dssp HHHHHHHHHHHTCCCCCC-CCCCC--CCCCCBCSCCCCCCCHHHHHTTC
T ss_pred HHHHHHHHHHHHHHhcCC-CCCCC--CcCCCCCCCCCCCCCHHHHHHcC
Confidence 346677788888765332 22334 55677888888888877766543
No 17
>2z67_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine biosynthesis, seven-stranded BETE-strand, PYR 5'-phosphate; HET: PLP; 2.50A {Methanococcus maripaludis} SCOP: c.67.1.9
Probab=64.04 E-value=4.8 Score=29.33 Aligned_cols=43 Identities=16% Similarity=0.177 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCCCCCCCCChhHHhhcCCCCCCCCCcCHHHHHHHHHH
Q psy3051 4 EEFREFGKAAIDFIADYHDTVRQRQVLPSVQPGYLASLVPGEMPEEGEDWRHIMRDMNT 62 (111)
Q Consensus 4 ~~~~~~~~~~~~~i~~~~~~~~~~pv~~~~~p~~l~~~~~~~~p~~g~~~~~~l~~~~~ 62 (111)
+.|.+.+.++++...++++++-. ...+|++|.+.+++.+.+.+
T Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~----------------~~~lp~~g~~~~~i~~~~~~ 74 (456)
T 2z67_A 32 KNMEKRGELVLNEYLKEIEDVFN----------------HRKIPENGIDDEKIKLFLKF 74 (456)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHHH----------------HCSCCSSCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhc----------------cCCCCCCCCCHHHHHHHHHH
Confidence 34555666665555444443211 13578888887777766655
No 18
>1wyu_A Glycine dehydrogenase (decarboxylating) subunit 1; alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_A* 1wyv_A*
Probab=59.81 E-value=17 Score=26.06 Aligned_cols=44 Identities=16% Similarity=0.273 Sum_probs=29.6
Q ss_pred ChhHHhhcCCCCCCCCCcCHHHHHHHHHHhhcCCCCccCCccccccccCCC
Q psy3051 34 QPGYLASLVPGEMPEEGEDWRHIMRDMNTVIMPGITHWQSPHFHAFYPSAS 84 (111)
Q Consensus 34 ~p~~l~~~~~~~~p~~g~~~~~~l~~~~~~v~~~~~~~~hPrf~~~v~~~~ 84 (111)
-|++++.. +..+| +|.+..++++++....-.+.. +|+.|+.++.
T Consensus 30 ~p~~~~~~-~~~lp-~~~~~~~~~~~~~~l~~~~~~-----~~~~~~~~g~ 73 (438)
T 1wyu_A 30 LPKEILSP-PIDLP-EPLPEWKVLEELRRLAAQNLP-----AHKAFLGGGV 73 (438)
T ss_dssp SCGGGSSC-CCCCC-CCCCHHHHHHHHHHHHHTSCC-----CTTCCCCSSC
T ss_pred CcHHHhcC-CCCCC-CCCCHHHHHHHHHHHHhcCcC-----ccccccCCCc
Confidence 36777766 77889 889999999998864333211 4566665555
No 19
>2v9v_A Selenocysteine-specific elongation factor; transcription, protein conformational change, transcription elongation factor SELB; 1.10A {Moorella thermoacetica} SCOP: a.4.5.35 a.4.5.35
Probab=56.87 E-value=15 Score=21.86 Aligned_cols=55 Identities=11% Similarity=0.279 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccCCCCCCCCChhHHhhcCCCCCCCCCcCHHHHHHHHHH
Q psy3051 3 SEEFREFGKAAIDFIADYHDTVRQRQVLPSVQPGYLASLVPGEMPEEGEDWRHIMRDMNT 62 (111)
Q Consensus 3 ~~~~~~~~~~~~~~i~~~~~~~~~~pv~~~~~p~~l~~~~~~~~p~~g~~~~~~l~~~~~ 62 (111)
.+.++++.+++++.+.+|.+.- |--++...++|++.+...+ ...-+..+++.+.+
T Consensus 61 ~~~~~~l~~~l~~~L~~yH~~~---P~~~G~~keeLr~~~~~~~--~~~~~~~ll~~l~~ 115 (135)
T 2v9v_A 61 TERYQAWWQAVTRALEEFHSRY---PLRPGLAREELRSRYFSRL--PARVYQALLEEWSR 115 (135)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC---TTSSCEEHHHHHHHHCTTS--CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhC---CCccCCCHHHHHHHhcccC--CHHHHHHHHHHHHH
Confidence 4567788888999999998874 4456778899988752112 22224566665554
No 20
>3t3l_A Frataxin, mitochondrial; Fe-S cluster biosynthesis, human mitochondria, oxidoreductas; 1.15A {Homo sapiens} SCOP: d.82.2.1 PDB: 3s4m_A 3t3k_A 3t3j_A 3s5f_A 3t3x_A 3t3t_A 3s5e_A 3s5d_A 1ekg_A 1ly7_A
Probab=43.56 E-value=28 Score=21.38 Aligned_cols=26 Identities=8% Similarity=0.483 Sum_probs=23.0
Q ss_pred CCHHHHHHHHHHHHHHHHHHHhhccC
Q psy3051 1 MNSEEFREFGKAAIDFIADYHDTVRQ 26 (111)
Q Consensus 1 ~~~~~~~~~~~~~~~~i~~~~~~~~~ 26 (111)
|+..+|.+++.+.++.|.++++.+.+
T Consensus 9 m~e~ef~~lad~~L~~ie~~le~~~d 34 (129)
T 3t3l_A 9 LDETTYERLAEETLDSLAEFFEDLAD 34 (129)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 77889999999999999999998654
No 21
>1ew4_A CYAY protein; friedreich ataxia, frataxin family, iron homeostasis, unknown function; 1.40A {Escherichia coli} SCOP: d.82.2.1 PDB: 2eff_A 2p1x_A 1soy_A
Probab=39.92 E-value=40 Score=19.85 Aligned_cols=24 Identities=25% Similarity=0.267 Sum_probs=21.9
Q ss_pred CCHHHHHHHHHHHHHHHHHHHhhc
Q psy3051 1 MNSEEFREFGKAAIDFIADYHDTV 24 (111)
Q Consensus 1 ~~~~~~~~~~~~~~~~i~~~~~~~ 24 (111)
|+..+|.+++.+.++.|.+.++..
T Consensus 1 m~~~ef~~lad~~l~~ie~~le~~ 24 (106)
T 1ew4_A 1 MNDSEFHRLADQLWLTIEERLDDW 24 (106)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhh
Confidence 788999999999999999999874
No 22
>1wyu_B Glycine dehydrogenase subunit 2 (P-protein); alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_B* 1wyv_B*
Probab=38.36 E-value=65 Score=23.34 Aligned_cols=41 Identities=12% Similarity=-0.032 Sum_probs=24.2
Q ss_pred hHHhhcCCCCCCCCCcCHHHHHHHHHHhhcCCCCccCCccccc
Q psy3051 36 GYLASLVPGEMPEEGEDWRHIMRDMNTVIMPGITHWQSPHFHA 78 (111)
Q Consensus 36 ~~l~~~~~~~~p~~g~~~~~~l~~~~~~v~~~~~~~~hPrf~~ 78 (111)
++++......+| +.+..++++.+.+..-.+.....+..|+|
T Consensus 32 ~~~~~~~~~~lp--~~~e~~~~~~~~~l~~~~~~~~~~~~~lg 72 (474)
T 1wyu_B 32 KEHLREVPPRLP--EVDELTLVRHYTGLSRRQVGVDTTFYPLG 72 (474)
T ss_dssp GGGBCSSCCCCC--CCCHHHHHHHHHHHHTTCCCTTTSCCCBT
T ss_pred HHHhccCCCCCC--CCCHHHHHHHHHHHHhCCCCcccCccccc
Confidence 444433334577 68888999999874433332234566666
No 23
>3g36_A Protein DPY-30 homolog; X-type four-helix bundle, nucleus, nuclear protein; 1.20A {Homo sapiens}
Probab=36.18 E-value=23 Score=18.48 Aligned_cols=14 Identities=14% Similarity=0.076 Sum_probs=12.0
Q ss_pred CCCHHHHHHHHHHh
Q psy3051 83 ASSFPSILGELLST 96 (111)
Q Consensus 83 ~~~~~s~lad~l~s 96 (111)
+.+|+.+||+||..
T Consensus 33 P~DPi~~LA~~Ll~ 46 (55)
T 3g36_A 33 PPNPIEFLASYLLK 46 (55)
T ss_dssp CSCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH
Confidence 67899999999964
No 24
>2ezv_A Type II restriction enzyme SFII; type IIF restriction endonuclease, protein/DNA complex, hydrolase/DNA complex; 2.40A {Synthetic} PDB: 2f03_A*
Probab=32.80 E-value=1.1e+02 Score=20.53 Aligned_cols=29 Identities=14% Similarity=0.091 Sum_probs=17.8
Q ss_pred HHHHHHHHHHhhcC-CCCccCCcccccccc
Q psy3051 53 WRHIMRDMNTVIMP-GITHWQSPHFHAFYP 81 (111)
Q Consensus 53 ~~~~l~~~~~~v~~-~~~~~~hPrf~~~v~ 81 (111)
..++-.++.+..++ ..+..-|-||||++.
T Consensus 50 v~diaEDITreALd~lg~~rI~~Rl~GkID 79 (269)
T 2ezv_A 50 VIVLAEDITQYALEVAETYPINRRFAGFID 79 (269)
T ss_dssp HHHHHHHHHHHHHTTSCCSBCSCCCCSSCS
T ss_pred HHHHHHHHHHHHHHHhCCCchhhhhhcccc
Confidence 44455555544333 356677899999863
No 25
>4eve_A Neutrophil-activating protein; dodecamer, four-helix bundle, metal transport; 2.10A {Helicobacter pylori} PDB: 4evd_A 3t9j_A 3ta8_A 4evb_A 4evc_A 1ji4_A
Probab=31.36 E-value=97 Score=19.34 Aligned_cols=53 Identities=11% Similarity=0.027 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHhhccCCCCCCCCChhHHhhcCCCCCCCCCc-CHHHHHHHHHH
Q psy3051 7 REFGKAAIDFIADYHDTVRQRQVLPSVQPGYLASLVPGEMPEEGE-DWRHIMRDMNT 62 (111)
Q Consensus 7 ~~~~~~~~~~i~~~~~~~~~~pv~~~~~p~~l~~~~~~~~p~~g~-~~~~~l~~~~~ 62 (111)
.....+.+|.+.+.+..+...|+ .++.++.+.-..+-...+. +..+.++.+.+
T Consensus 64 ~~e~~~~~D~lAERI~~LGg~P~---~t~~~~~~~s~i~e~~~~~~~~~eml~~ll~ 117 (164)
T 4eve_A 64 YEEFADMFDDLAERIVQLGHHPL---VTLSEAIKLTRVKEETKTSFHSKDIFKEILE 117 (164)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCC---CCHHHHHHHCCSCCCCCCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCCCC---CCHHHHHHHcCCCcCCCCCCCHHHHHHHHHH
Confidence 33445566777777777766554 3677776653322223344 66666665543
No 26
>1go3_F DNA-directed RNA polymerase subunit F; transferase, transferase, transcription; 1.75A {Methanococcus jannaschii} SCOP: a.60.8.2
Probab=28.56 E-value=63 Score=18.97 Aligned_cols=28 Identities=11% Similarity=-0.010 Sum_probs=19.8
Q ss_pred CChhHHhhcCCCCCCCCCcCHHHHHHHHHH
Q psy3051 33 VQPGYLASLVPGEMPEEGEDWRHIMRDMNT 62 (111)
Q Consensus 33 ~~p~~l~~~~~~~~p~~g~~~~~~l~~~~~ 62 (111)
.++++++.+++..-- +..++++|+.+.+
T Consensus 78 ~t~dElraii~~~~~--~eel~~ILd~l~k 105 (107)
T 1go3_F 78 EDLDDLRAIYYKREL--PENAEEILEIVRK 105 (107)
T ss_dssp CSHHHHHHHSTTSCC--CTTHHHHHHHHTT
T ss_pred CCHHHHHHHHhcccC--cHHHHHHHHHHHH
Confidence 378999998764322 6778888887764
No 27
>4a25_A DPS, ferritin DPS family protein; metal binding protein, detoxification process; 2.00A {Kineococcus radiotolerans}
Probab=28.46 E-value=1.1e+02 Score=19.16 Aligned_cols=34 Identities=18% Similarity=0.156 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCCCCCCCCChhHHhh
Q psy3051 4 EEFREFGKAAIDFIADYHDTVRQRQVLPSVQPGYLAS 40 (111)
Q Consensus 4 ~~~~~~~~~~~~~i~~~~~~~~~~pv~~~~~p~~l~~ 40 (111)
|+.-......+|.|.+.+..+...|+. +++.+..
T Consensus 63 ee~y~e~~~~~D~iAERI~~LGg~P~~---~~~~~~~ 96 (169)
T 4a25_A 63 DTLVEAARGFSDDVAERMRAVGGVPDA---RPQTVAA 96 (169)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCCCC---CHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCc---cHHHHHH
Confidence 344555667788888888888766543 5666654
No 28
>3esi_A Uncharacterized protein; protein from erwinia carotovora subsp. atroseptica (pectobacterium atrosepticum), structural genomics; 2.50A {Pectobacterium atrosepticum}
Probab=27.89 E-value=25 Score=21.53 Aligned_cols=26 Identities=8% Similarity=0.103 Sum_probs=20.9
Q ss_pred cCCCCccCCccccccccCCCCHHHHH
Q psy3051 65 MPGITHWQSPHFHAFYPSASSFPSIL 90 (111)
Q Consensus 65 ~~~~~~~~hPrf~~~v~~~~~~~s~l 90 (111)
....+..++|-|=||+|+.+-.+|++
T Consensus 22 ~~~~v~~~e~~F~GHFPg~PVmPGVl 47 (129)
T 3esi_A 22 LMLQVDPDLFWFNGHFTGQPLLPGVA 47 (129)
T ss_dssp EEEECCTTSGGGCTTTBSSCCCCHHH
T ss_pred EEEEeCCCCchhcCCCCCCCcCCcHH
Confidence 44466789999999999988877765
No 29
>2d5k_A DPS, DPS family protein; four helix bundle, metal binding protein; 1.85A {Staphylococcus aureus subsp}
Probab=26.11 E-value=1.2e+02 Score=18.53 Aligned_cols=48 Identities=10% Similarity=-0.002 Sum_probs=27.0
Q ss_pred HHHHHHHHHHhhccCCCCCCCCChhHHhhcCCCCCCCCCcCHHHHHHHHHH
Q psy3051 12 AAIDFIADYHDTVRQRQVLPSVQPGYLASLVPGEMPEEGEDWRHIMRDMNT 62 (111)
Q Consensus 12 ~~~~~i~~~~~~~~~~pv~~~~~p~~l~~~~~~~~p~~g~~~~~~l~~~~~ 62 (111)
.-++.+.+++..+...|+. ++.++.+.-..+-|..+.+..++++.+.+
T Consensus 54 ~had~iaERI~~lGg~p~~---~~~~~~~~s~i~~~~~~~~~~e~l~~~l~ 101 (156)
T 2d5k_A 54 QYVDELAERILAVGGNPVG---TLTECLEQSIVKEAAKGYSAEQMVEELSQ 101 (156)
T ss_dssp HHHHHHHHHHHHTTCCCCC---SHHHHHHHCSSCCCCSCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCCC---CHHHHHHHCCCCCCCCCCCHHHHHHHHHH
Confidence 4456667777777666554 56666554333333333467677666543
No 30
>3al0_C Glutamyl-tRNA(Gln) amidotransferase subunit C, GL tRNA synthetase 2; protein-RNA complex, ligase-RNA complex; HET: GSU; 3.37A {Thermotoga maritima}
Probab=25.69 E-value=62 Score=24.96 Aligned_cols=13 Identities=23% Similarity=0.424 Sum_probs=8.0
Q ss_pred HHHHHHHHhhccC
Q psy3051 14 IDFIADYHDTVRQ 26 (111)
Q Consensus 14 ~~~i~~~~~~~~~ 26 (111)
++.|.+|++.+.+
T Consensus 33 l~~Il~~ve~L~e 45 (592)
T 3al0_C 33 FQEILDYVELLNE 45 (592)
T ss_dssp HHHHHHHHTTTCS
T ss_pred HHHHHHHHHHHcc
Confidence 5556677766643
No 31
>1z21_A YOP proteins translocation protein H; plague, type III secretion, YOPR, cell invasion; 1.50A {Yersinia pestis} SCOP: a.243.1.2
Probab=24.51 E-value=36 Score=20.25 Aligned_cols=58 Identities=16% Similarity=0.204 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHhhccCCCCCCCCChhHHhhcCCCCCCCCCcCHHHHHHHHHHhhcC
Q psy3051 7 REFGKAAIDFIADYHDTVRQRQVLPSVQPGYLASLVPGEMPEEGEDWRHIMRDMNTVIMP 66 (111)
Q Consensus 7 ~~~~~~~~~~i~~~~~~~~~~pv~~~~~p~~l~~~~~~~~p~~g~~~~~~l~~~~~~v~~ 66 (111)
+.++.-+-+.+..++.. +..||.+..+--||++.+++..|-. .--+.+|-.+...|-+
T Consensus 29 ~~L~~PV~e~L~arFgg-~q~pV~~aiD~pELRa~~ReFdPlg-~r~EtvLL~vL~~ik~ 86 (112)
T 1z21_A 29 EVLATPVREALLARFGQ-HQGSVVPAIDLPELRSVLQQFDSFG-KRWEAILLQVLEGIKP 86 (112)
T ss_dssp HHHHHHHHHHHHHHHTT-CCSCCCHHHHHHHHHHHHHHHSCSS-HHHHHHHHHHHHTC--
T ss_pred HHHHHHHHHHHHHHhcc-ccCCCCcccccHHHHHHHHHhCcch-hHHHHHHHHHHHHccc
Confidence 44555666677777765 4468887777778888776655533 3334555555544544
No 32
>1lva_A Selenocysteine-specific elongation factor; winged-helix, translation; 2.12A {Moorella thermoacetica} SCOP: a.4.5.35 a.4.5.35 a.4.5.35 a.4.5.35 PDB: 2uwm_A 2ply_A 1wsu_A
Probab=24.34 E-value=93 Score=20.90 Aligned_cols=54 Identities=13% Similarity=0.332 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccCCCCCCCCChhHHhhcCCCCCCCCCcCHHHHHHHHH
Q psy3051 3 SEEFREFGKAAIDFIADYHDTVRQRQVLPSVQPGYLASLVPGEMPEEGEDWRHIMRDMN 61 (111)
Q Consensus 3 ~~~~~~~~~~~~~~i~~~~~~~~~~pv~~~~~p~~l~~~~~~~~p~~g~~~~~~l~~~~ 61 (111)
.+.+.++.+++.+.+.+|.+.- |--++.+.+++++.+...+|+ .-+..+++.+.
T Consensus 61 ~~~~~~~~~~l~~~L~~~H~~~---P~~~G~~~~~L~~~~~~~~~~--~l~~~ll~~l~ 114 (258)
T 1lva_A 61 TERYQAWWQAVTRALEEFHSRY---PLRPGLAREELRSRYFSRLPA--RVYQALLEEWS 114 (258)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC---TTSSCEEHHHHHHHHCTTSCH--HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhC---CCccCCCHHHHHHhccccCCH--HHHHHHHHHHH
Confidence 4566777788888888888763 444667788998875322221 22355555554
No 33
>2ast_A S-phase kinase-associated protein 1A; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} PDB: 2ass_A* 2e31_B 2e32_B 3l2o_A 1p22_B* 2ovr_A* 2ovp_A 1fqv_B* 2ovq_A*
Probab=22.11 E-value=1.5e+02 Score=18.27 Aligned_cols=29 Identities=10% Similarity=0.047 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHhhccCCCCCCCCChhHHhhcCCC
Q psy3051 11 KAAIDFIADYHDTVRQRQVLPSVQPGYLASLVPG 44 (111)
Q Consensus 11 ~~~~~~i~~~~~~~~~~pv~~~~~p~~l~~~~~~ 44 (111)
..+++..+.++.+.- .+.+|+++++.|+.
T Consensus 112 ~~Lld~~c~~va~~i-----~gkt~eeir~~f~I 140 (159)
T 2ast_A 112 KGLLDVTCKTVANMI-----KGKTPEEIRKTFNI 140 (159)
T ss_dssp HHHHHHHHHHHHHHH-----SSCCHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHH-----cCCCHHHHHHHcCC
Confidence 455666677776642 33589999999863
No 34
>1iio_A Conserved hypothetical protein MTH865; 4-helical bundle, monomer, structural genomics, unknown function; NMR {Methanothermobacterthermautotrophicus str} SCOP: a.39.4.1
Probab=21.51 E-value=1.2e+02 Score=17.16 Aligned_cols=35 Identities=14% Similarity=0.094 Sum_probs=24.4
Q ss_pred HHHHHHHHHHhhccCCCCCCCCChhHHhhcCCCCCCCCC
Q psy3051 12 AAIDFIADYHDTVRQRQVLPSVQPGYLASLVPGEMPEEG 50 (111)
Q Consensus 12 ~~~~~i~~~~~~~~~~pv~~~~~p~~l~~~~~~~~p~~g 50 (111)
++.+++.++++.. + +|-.+|.||...|+.-.+...
T Consensus 11 ei~~qi~~a~~~a-~---FPI~s~~EL~~AlP~G~~t~c 45 (84)
T 1iio_A 11 DIRGQIIGALAGA-D---FPINSPEELMAALPNGPDTTC 45 (84)
T ss_dssp HHHHHHHHHHTTS-S---STTBHHHHHHHHCTTSSCCCC
T ss_pred HHHHHHHHHHcCC-C---CCCCCHHHHHHhCCCCCCCce
Confidence 5667777777775 3 455689999999876655443
Done!