RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy3051
(111 letters)
>3k40_A Aromatic-L-amino-acid decarboxylase; PLP dependent protein, alpha
beta protein, alternative splicing, catecholamine
biosynthesis, lyase; HET: LLP; 1.75A {Drosophila
melanogaster}
Length = 475
Score = 143 bits (363), Expect = 2e-42
Identities = 51/105 (48%), Positives = 79/105 (75%)
Query: 1 MNSEEFREFGKAAIDFIADYHDTVRQRQVLPSVQPGYLASLVPGEMPEEGEDWRHIMRDM 60
M + EF++F K +DFIA+Y + +R+R+VLP V+PGYL L+P PE+ E W+ +M+D+
Sbjct: 1 MEAPEFKDFAKTMVDFIAEYLENIRERRVLPEVKPGYLKPLIPDAAPEKPEKWQDVMQDI 60
Query: 61 NTVIMPGITHWQSPHFHAFYPSASSFPSILGELLSTGLGVLSFTW 105
VIMPG+THW SP FHA++P+A+S+P+I+ ++LS + + FTW
Sbjct: 61 ERVIMPGVTHWHSPKFHAYFPTANSYPAIVADMLSGAIACIGFTW 105
>1js3_A DDC;, DOPA decarboxylase; carbidopa, parkinson'S disease, vitamin;
HET: PLP 142; 2.25A {Sus scrofa} SCOP: c.67.1.6 PDB:
1js6_A* 3rch_A* 3rbl_A 3rbf_A*
Length = 486
Score = 142 bits (360), Expect = 5e-42
Identities = 47/105 (44%), Positives = 75/105 (71%)
Query: 1 MNSEEFREFGKAAIDFIADYHDTVRQRQVLPSVQPGYLASLVPGEMPEEGEDWRHIMRDM 60
MN+ +FR GK +D++ADY + + RQV P VQPGYL L+P P+E + + I++D+
Sbjct: 1 MNASDFRRRGKEMVDYMADYLEGIEGRQVYPDVQPGYLRPLIPATAPQEPDTFEDILQDV 60
Query: 61 NTVIMPGITHWQSPHFHAFYPSASSFPSILGELLSTGLGVLSFTW 105
+IMPG+THW SP+F A++P+ASS+P++L ++L +G + F+W
Sbjct: 61 EKIIMPGVTHWHSPYFFAYFPTASSYPAMLADMLCGAIGCIGFSW 105
>4e1o_A HDC, histidine decarboxylase; lyase; HET: PLP PVH; 1.80A {Homo
sapiens}
Length = 481
Score = 141 bits (357), Expect = 2e-41
Identities = 51/105 (48%), Positives = 73/105 (69%)
Query: 1 MNSEEFREFGKAAIDFIADYHDTVRQRQVLPSVQPGYLASLVPGEMPEEGEDWRHIMRDM 60
M EE+RE G+ +D+I Y TVR+R+V P VQPGYL + +P PE+ + W I D+
Sbjct: 6 MEPEEYRERGREMVDYICQYLSTVRERRVTPDVQPGYLRAQLPESAPEDPDSWDSIFGDI 65
Query: 61 NTVIMPGITHWQSPHFHAFYPSASSFPSILGELLSTGLGVLSFTW 105
+IMPG+ HWQSPH HA+YP+ +S+PS+LG++L+ + L FTW
Sbjct: 66 ERIIMPGVVHWQSPHMHAYYPALTSWPSLLGDMLADAINCLGFTW 110
>2okj_A Glutamate decarboxylase 1; PLP-dependent decarboxylase, lyase; HET:
LLP PLZ; 2.30A {Homo sapiens} PDB: 2okk_A*
Length = 504
Score = 128 bits (323), Expect = 1e-36
Identities = 23/113 (20%), Positives = 41/113 (36%), Gaps = 8/113 (7%)
Query: 2 NSEEFREFGKAAIDFIADYHDTVRQR--QVLPSVQPGYLASLVPG---EMPEEGEDWRHI 56
E+ +F +D + +Y R +VL P L + G E+ + E I
Sbjct: 17 GEEQTVQFLLEVVDILLNYVRKTFDRSTKVLDFHHPHQLLEGMEGFNLELSDHPESLEQI 76
Query: 57 MRDMNTVIMPGITHWQSPHFHAFYPSASSFPSILGELLSTGLGVLSFTW--SP 107
+ D + G+ P F + + GE L++ FT+ +P
Sbjct: 77 LVDCRDTLKYGVRTGH-PRFFNQLSTGLDIIGLAGEWLTSTANTNMFTYEIAP 128
>2qma_A Diaminobutyrate-pyruvate transaminase and L-2,4- diaminobutyrate
decarboxylase; structural genomics, APC91511.1,
glutamate decarboxylase; HET: MSE; 1.81A {Vibrio
parahaemolyticus}
Length = 497
Score = 128 bits (323), Expect = 2e-36
Identities = 14/110 (12%), Positives = 34/110 (30%), Gaps = 5/110 (4%)
Query: 1 MNSEEFREFGKAAIDFIADYHDTVRQRQVLPSVQPGYLASLVPG-EMPEEGEDWRHIMRD 59
+ S EF + + V + P L + ++ + + ++ D
Sbjct: 29 LGSAEFASVMSHTTSAMKSVFEQVNA--PYSGMDPKALEDAINAVDLDNKNAPLKSVIDD 86
Query: 60 MNTVIMPGITHWQSPHFHAFYPSASSFPSILGELLSTGLGVLSFTW--SP 107
+ ++ Q P A + P++ E + L +W +
Sbjct: 87 VAELVAKNAIFTQHPDCIAHLHTPPLMPAVAAEAMIAALNQSMDSWDQAS 136
>2jis_A Cysteine sulfinic acid decarboxylase; pyridoxal phosphate,
alternative splicing, pyridoxal phosphate (PLP),
structural genomics consortium (SGC); HET: PLP; 1.6A
{Homo sapiens}
Length = 515
Score = 117 bits (295), Expect = 1e-32
Identities = 21/106 (19%), Positives = 39/106 (36%), Gaps = 4/106 (3%)
Query: 4 EEFREFGKAAIDFIADYHDTVRQRQVLPSVQPGYLASLVPGEMPEEGEDWRHIMRDMNTV 63
R +D +V Q+ V +P L L+ E+ +GE + I+ V
Sbjct: 41 ALLRAVFGVVVDEAIQKGTSVSQK-VCEWKEPEELKQLLDLELRSQGESQKQILERCRAV 99
Query: 64 IMPGITHWQSPHFHAFYPSASSFPSILGELLSTGLGVLSFTW--SP 107
I + P F S ++ G +++ L +T+ +P
Sbjct: 100 IRYSVKTG-HPRFFNQLFSGLDPHALAGRIITESLNTSQYTYEIAP 144
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 35.8 bits (82), Expect = 0.001
Identities = 18/86 (20%), Positives = 30/86 (34%), Gaps = 20/86 (23%)
Query: 32 SVQPGYLASLVPGEMPEEGEDWRHIMRDMNTVIMPGIT----HW------QSPHFHAFYP 81
S + +P +G D R + ++ I+ I W ++ H F P
Sbjct: 449 SFNAKDIQ--IPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDFGP 506
Query: 82 SASSFPSILGELLS-----TGLGVLS 102
+S LG L TG+ V+
Sbjct: 507 GGASG---LGVLTHRNKDGTGVRVIV 529
Score = 28.1 bits (62), Expect = 0.68
Identities = 27/147 (18%), Positives = 41/147 (27%), Gaps = 49/147 (33%)
Query: 3 SEEFREFGKAAIDFIADYHDTVRQRQVL--PSVQPG--YLAS------------------ 40
+E E + +D + + + L PS P YL S
Sbjct: 192 AETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVV 251
Query: 41 ------LVPGEMPE-------------------EGEDWRHIMRDMNTVIMPGITHWQSPH 75
PGE+ E + W + I + +
Sbjct: 252 TAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAI--TVLFFIGVR 309
Query: 76 FHAFYPSASSFPSILGELLSTGLGVLS 102
+ YP+ S PSIL + L GV S
Sbjct: 310 CYEAYPNTSLPPSILEDSLENNEGVPS 336
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 32.1 bits (72), Expect = 0.027
Identities = 18/86 (20%), Positives = 34/86 (39%), Gaps = 15/86 (17%)
Query: 30 LP----SVQPGYLASLVPGEMPEEG----EDWRHIMRD-MNTVIMPGITHWQSPHFHAFY 80
LP + P S++ E +G ++W+H+ D + T+I + + + +
Sbjct: 318 LPREVLTTNP-RRLSII-AESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMF 375
Query: 81 PSASSFPSILGELLSTGLGVLSFTWS 106
S FP + T +LS W
Sbjct: 376 DRLSVFPP--SAHIPT--ILLSLIWF 397
>3r9m_A BRO1 domain-containing protein BROX; protein binding; 1.95A {Homo
sapiens} PDB: 3um3_A 3zxp_A 3um2_A 3um1_A 3uly_A 3um0_A
Length = 376
Score = 29.4 bits (65), Expect = 0.22
Identities = 9/41 (21%), Positives = 12/41 (29%), Gaps = 3/41 (7%)
Query: 15 DFIADYHDTV-RQRQVLPSVQPGYLASLVPGEMPEEGEDWR 54
FI Y + + L L +P E P W
Sbjct: 330 GFI--YFQKIPTEAPQLELKANYGLVEPIPFEFPPTSVQWT 368
>2bw3_A Transposase; DNA recombination, transposition; 2.0A {Musca
domestica} SCOP: a.270.1.1 c.55.3.12 PDB: 2bw3_B
Length = 534
Score = 28.2 bits (61), Expect = 0.54
Identities = 19/111 (17%), Positives = 35/111 (31%), Gaps = 4/111 (3%)
Query: 2 NSEEFREFGKAAIDFIADYHDTVRQRQVLPSVQPGYLASLVPGEMPEEGEDWRHIMRDMN 61
+ F + K I A+Y + V ++LPS L+ V + E+ ++
Sbjct: 38 SGSGFIDMIKFFIKVKAEYGEHVNVEELLPSPI--TLSRKVTSDAKEKKALIGREIKSAV 95
Query: 62 TVIMPGIT--HWQSPHFHAFYPSASSFPSILGELLSTGLGVLSFTWSPHVG 110
T W + + + EL LG+ S +
Sbjct: 96 EKDGASATIDLWTDNYIKRNFLGVTLHYHENNELRDLILGLKSLDFERSTA 146
>2ou6_A Hypothetical protein; structural genomics, joint center for
structural genomics, J protein structure initiative,
PSI-2; 1.80A {Deinococcus radiodurans} SCOP: a.213.1.2
Length = 190
Score = 27.3 bits (60), Expect = 0.98
Identities = 10/58 (17%), Positives = 18/58 (31%), Gaps = 2/58 (3%)
Query: 4 EEFREFGKAAIDFIADYHDTVRQR--QVLPSVQPGYLASLVPGEMPEEGEDWRHIMRD 59
E +D + R +V + +LA + + W H+M D
Sbjct: 112 EGTAPARLPTLDELRAELADARAETLRVFAAKDDAWLAEPLGPGWANQHWAWFHVMED 169
>1zy7_A RNA-specific adenosine deaminase B1, isoform drada2A; alpha/beta
deaminase motif, zinc coordination, ionsitol
hexakisphosphate, hydrolase; HET: IHP; 1.70A {Homo
sapiens}
Length = 403
Score = 26.3 bits (57), Expect = 2.1
Identities = 11/57 (19%), Positives = 21/57 (36%), Gaps = 1/57 (1%)
Query: 33 VQPGYLASLVPGEMPEEGEDWRHIM-RDMNTVIMPGITHWQSPHFHAFYPSASSFPS 88
V+P Y +S++ G + R + R N +P + P + + P
Sbjct: 239 VEPIYFSSIILGSLYHGDHLSRAMYQRISNIEDLPPLYTLNKPLLSGISNAEARQPG 295
>3c3r_A Programmed cell death 6-interacting protein; ALIX BRO1 CHMP4C
amphipathic-helix, apoptosis, HOST-virus interaction,
protein transport, transport; 2.02A {Homo sapiens} PDB:
2oew_A 3c3o_A 3c3q_A
Length = 380
Score = 26.3 bits (57), Expect = 2.8
Identities = 11/39 (28%), Positives = 15/39 (38%), Gaps = 2/39 (5%)
Query: 15 DFIADYHDTVRQRQVLPSVQPGYLASLVPGEMPEEGEDW 53
DFI YHD V + L + L P +P +
Sbjct: 337 DFI--YHDRVPDLKDLDPIGKATLVKSTPVNVPISQKFT 373
>1ta3_B Endo-1,4-beta-xylanase; beta alpha barrel (XIP-I), beta alpha
barrel (xylanase), HYD inhibitor-hydrolase complex; HET:
NAG; 1.70A {Emericella nidulans} SCOP: c.1.8.3
Length = 303
Score = 25.3 bits (56), Expect = 4.3
Identities = 8/33 (24%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 72 QSPHFHAFYPSASSFPSILGELLSTGLGVLSFT 104
Q+ H+ + + S++ L L +TG+ ++ T
Sbjct: 206 QA-HYSSSHWSSTEAAGALSSLANTGVSEVAIT 237
>2xkj_E Topoisomerase IV; type IIA topoisomerase; 2.20A {Acinetobacter
baumannii} PDB: 2xkk_A*
Length = 767
Score = 25.0 bits (55), Expect = 7.7
Identities = 4/26 (15%), Positives = 14/26 (53%)
Query: 7 REFGKAAIDFIADYHDTVRQRQVLPS 32
E G+ ++ ++ ++++ LP+
Sbjct: 402 SELGQGTSEWQDNFDGSLKEPITLPA 427
>3rau_A Tyrosine-protein phosphatase non-receptor type 23; BRO1 domain,
hydrolase; 1.95A {Homo sapiens}
Length = 363
Score = 24.8 bits (53), Expect = 8.5
Identities = 10/29 (34%), Positives = 13/29 (44%), Gaps = 2/29 (6%)
Query: 15 DFIADYHDTVRQRQVLPSVQPGYLASLVP 43
DFI YH+ V L V+ L +P
Sbjct: 319 DFI--YHEAVPALDTLQPVKGAPLVKPLP 345
>3mc6_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxyl
phosphate; HET: LLP; 3.15A {Saccharomyces cerevisiae}
Length = 497
Score = 24.9 bits (54), Expect = 8.5
Identities = 5/40 (12%), Positives = 14/40 (35%), Gaps = 1/40 (2%)
Query: 45 EMPEEGEDWRHIMRDMNTVI-MPGITHWQSPHFHAFYPSA 83
++P G ++ ++N + + T W+
Sbjct: 37 QLPSNGIPQDDVIEELNKLNDLIPHTQWKEGKVSGAVYHG 76
>1zb1_A BRO1 protein; AIP1, BRO1 domain, SNF7, trafficking, protein
transport; 1.95A {Saccharomyces cerevisiae}
Length = 392
Score = 24.8 bits (53), Expect = 8.6
Identities = 9/35 (25%), Positives = 14/35 (40%), Gaps = 2/35 (5%)
Query: 15 DFIADYHDTVRQRQVLPSVQPGYLASLVPGEMPEE 49
DFI YH++V + S++ E E
Sbjct: 322 DFI--YHESVPAVVQVDSIKALDAIKSPTWEKILE 354
>1zvu_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling,
decatenation, DNA bindi topology; 3.00A {Escherichia
coli}
Length = 716
Score = 24.8 bits (55), Expect = 8.8
Identities = 6/26 (23%), Positives = 17/26 (65%)
Query: 7 REFGKAAIDFIADYHDTVRQRQVLPS 32
E G+ D++ ++ T+++ ++LP+
Sbjct: 108 SELGQGTADWVPNFDGTLQEPKMLPA 133
>2uwf_A Endoxylanase, alkaline active endoxylanase; hydrolase, xylan
degradation, xylanase structure, glycosidase,
alkaliphilic; 2.10A {Bacillus halodurans} PDB: 2f8q_A
2fgl_A*
Length = 356
Score = 24.5 bits (53), Expect = 8.9
Identities = 8/30 (26%), Positives = 11/30 (36%), Gaps = 1/30 (3%)
Query: 71 WQSPHFHAFYPSASSFPSILGELLSTGLGV 100
QS H +PS + + S GL
Sbjct: 223 HQS-HIQIGWPSIEDTRASFEKFTSLGLDN 251
>2dep_A Xylanase B, thermostable celloxylanase; glycosidase, xylan
degradation, family 10, structural genomics, NPPSFA;
1.80A {Clostridium stercorarium}
Length = 356
Score = 24.8 bits (54), Expect = 8.9
Identities = 5/30 (16%), Positives = 9/30 (30%), Gaps = 1/30 (3%)
Query: 71 WQSPHFHAFYPSASSFPSILGELLSTGLGV 100
Q+ H + P + + GL
Sbjct: 222 HQT-HIDIYNPPVERIIESIKKFAGLGLDN 250
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.136 0.434
Gapped
Lambda K H
0.267 0.0679 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,860,739
Number of extensions: 100524
Number of successful extensions: 268
Number of sequences better than 10.0: 1
Number of HSP's gapped: 260
Number of HSP's successfully gapped: 45
Length of query: 111
Length of database: 6,701,793
Length adjustment: 75
Effective length of query: 36
Effective length of database: 4,607,718
Effective search space: 165877848
Effective search space used: 165877848
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (23.5 bits)