RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy3051
         (111 letters)



>d1js3a_ c.67.1.6 (A:) DOPA decarboxylase {Pig (Sus scrofa) [TaxId:
           9823]}
          Length = 476

 Score =  128 bits (322), Expect = 3e-37
 Identities = 47/105 (44%), Positives = 75/105 (71%)

Query: 1   MNSEEFREFGKAAIDFIADYHDTVRQRQVLPSVQPGYLASLVPGEMPEEGEDWRHIMRDM 60
           MN+ +FR  GK  +D++ADY + +  RQV P VQPGYL  L+P   P+E + +  I++D+
Sbjct: 1   MNASDFRRRGKEMVDYMADYLEGIEGRQVYPDVQPGYLRPLIPATAPQEPDTFEDILQDV 60

Query: 61  NTVIMPGITHWQSPHFHAFYPSASSFPSILGELLSTGLGVLSFTW 105
             +IMPG+THW SP+F A++P+ASS+P++L ++L   +G + F+W
Sbjct: 61  EKIIMPGVTHWHSPYFFAYFPTASSYPAMLADMLCGAIGCIGFSW 105


>d1ab4a_ e.11.1.1 (A:) DNA Gyrase A {Escherichia coli [TaxId: 562]}
          Length = 493

 Score = 27.2 bits (60), Expect = 0.45
 Identities = 8/30 (26%), Positives = 15/30 (50%)

Query: 6   FREFGKAAIDFIADYHDTVRQRQVLPSVQP 35
             +  K  +DF+ +Y  T +   V+P+  P
Sbjct: 106 MADLEKETVDFVDNYDGTEKIPDVMPTKIP 135


>d2f4pa1 b.82.1.9 (A:2-135) Hypothetical protein TM1010
          {Thermotoga maritima [TaxId: 2336]}
          Length = 134

 Score = 25.7 bits (56), Expect = 1.0
 Identities = 8/28 (28%), Positives = 12/28 (42%)

Query: 44 GEMPEEGEDWRHIMRDMNTVIMPGITHW 71
          G   E G+  R + +     I P + HW
Sbjct: 66 GFYQERGKPARILKKGDVVEIPPNVVHW 93


>d2z67a1 c.67.1.9 (A:1-434) Selenocysteinyl-tRNA synthase (SepSecS)
           {Methanococcus maripaludis [TaxId: 39152]}
          Length = 434

 Score = 25.3 bits (54), Expect = 2.2
 Identities = 11/123 (8%), Positives = 25/123 (20%), Gaps = 37/123 (30%)

Query: 4   EEFREFGKAAIDFIADYHDTVRQRQVLPSVQPGYLASLVPGEMPEEGEDWRHIMRDMN-- 61
           +   + G+  ++      + V   + +P                E G D   I   +   
Sbjct: 12  KNMEKRGELVLNEYLKEIEDVFNHRKIP----------------ENGIDDEKIKLFLKFL 55

Query: 62  -------------------TVIMPGITHWQSPHFHAFYPSASSFPSILGELLSTGLGVLS 102
                                         S   H    S +          ++ +  L+
Sbjct: 56  SMMDTDKDPKSVRIGEREARTYSKIHEELSSGFCHGIGRSGNLVDPQPKASGASIMYALT 115

Query: 103 FTW 105
              
Sbjct: 116 NKI 118


>d1r89a2 d.218.1.7 (A:1-142) tRNA nucleotidyltransferase, N-terminal
           domain {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
          Length = 142

 Score = 23.3 bits (50), Expect = 7.3
 Identities = 12/57 (21%), Positives = 20/57 (35%), Gaps = 7/57 (12%)

Query: 4   EEFREFG-KAAIDFIADYHDTVRQRQVLPSVQ---PGYLASLVPGEMPEEGEDWRHI 56
           EE RE G +     +  Y     +    P V     G    +VP    +E ++ +  
Sbjct: 73  EELRERGLEIGKAVLDSYEIRYAEH---PYVHGVVKGVEVDVVPCYKLKEPKNIKSA 126


>d2ac0a1 b.2.5.2 (A:96-289) p53 tumor suppressor, DNA-binding domain
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 194

 Score = 23.6 bits (51), Expect = 7.3
 Identities = 8/22 (36%), Positives = 10/22 (45%)

Query: 36  GYLASLVPGEMPEEGEDWRHIM 57
              + +VP E PE G D   I 
Sbjct: 117 FRHSVVVPYEPPEVGSDCTTIH 138


>d1i1ip_ d.92.1.5 (P:) Neurolysin (endopeptidase 24.16, thimet
           oligopeptidase) {Rat (Rattus norvegicus) [TaxId: 10116]}
          Length = 665

 Score = 23.6 bits (50), Expect = 7.3
 Identities = 4/30 (13%), Positives = 11/30 (36%)

Query: 1   MNSEEFREFGKAAIDFIADYHDTVRQRQVL 30
            +  E R     A   ++ +   +  R+ +
Sbjct: 77  SSDREVRAASTEADKKLSRFDIEMSMREDV 106


>d5csma_ a.130.1.2 (A:) Allosteric chorismate mutase {Baker's yeast
           (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 256

 Score = 23.2 bits (50), Expect = 9.7
 Identities = 7/29 (24%), Positives = 12/29 (41%), Gaps = 8/29 (27%)

Query: 70  HWQSPHFHAFYPSA--------SSFPSIL 90
            ++SP    F+P           ++P IL
Sbjct: 76  RFESPDETPFFPDKIQKSFLPSINYPQIL 104


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.320    0.136    0.434 

Gapped
Lambda     K      H
   0.267   0.0667    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 459,011
Number of extensions: 19432
Number of successful extensions: 74
Number of sequences better than 10.0: 1
Number of HSP's gapped: 74
Number of HSP's successfully gapped: 17
Length of query: 111
Length of database: 2,407,596
Length adjustment: 70
Effective length of query: 41
Effective length of database: 1,446,496
Effective search space: 59306336
Effective search space used: 59306336
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.0 bits)