BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3053
(917 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1T77|A Chain A, Crystal Structure Of The Ph-Beach Domains Of Human LrbaBGL
pdb|1T77|B Chain B, Crystal Structure Of The Ph-Beach Domains Of Human LrbaBGL
pdb|1T77|C Chain C, Crystal Structure Of The Ph-Beach Domains Of Human LrbaBGL
pdb|1T77|D Chain D, Crystal Structure Of The Ph-Beach Domains Of Human LrbaBGL
Length = 414
Score = 314 bits (804), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 188/417 (45%), Positives = 234/417 (56%), Gaps = 37/417 (8%)
Query: 158 VILETFGNKITPLVVNPGRIVLSSTNLYFQ------PFNNIEPHKLL-------KVRLAG 204
V L T + P VV G + ++S+ LYF+ F I+P L K
Sbjct: 3 VSLSTPAQLVAPSVVVKGTLSVTSSELYFEVDEEDPNFKKIDPKILAYTEGLHGKWLFTE 62
Query: 205 IKRIIRRRFLLQQVGIEIY----------FKDLEPVKYLYLTLKTQGARDTLYNALLDLP 254
I+ I RR+LLQ +EI+ F D VK + L G + L
Sbjct: 63 IRSIFSRRYLLQNTALEIFMANRVAVMFNFPDPATVKKVVNFLPRVGVGTSF--GLPQTR 120
Query: 255 ELQLSHSDQEI----MTLRWQNGALSNYDYLMYLNSLADRSLNDLTQYPVFPWVISNYTC 310
+ L+ Q MT RWQ+ +SN++YLM+LN++A RS NDL QYPVFPWVI+NY
Sbjct: 121 RISLASPRQLFKASNMTQRWQHREISNFEYLMFLNTIAGRSYNDLNQYPVFPWVITNYES 180
Query: 311 DTLDLSDSNNYRDLSKPIGALNPTRLERLKERYNEMPH---PKFLYGSHYSTPGFVLFYL 367
+ LDL+ N+RDLSKPIGALNP R ERY PKF YG+HYST FVL +L
Sbjct: 181 EELDLTLPTNFRDLSKPIGALNPKRAAFFAERYESWEDDQVPKFHYGTHYSTASFVLAWL 240
Query: 368 VR--KFPQYMLCLQNGRFDHPDRMFNSIPDIWRNVLTNMSDFKELVPEFYDTEQKGDFLE 425
+R F Y L LQ G+FDH DR F+SI WRN + SD KEL+PEFY +
Sbjct: 241 LRIEPFTTYFLNLQGGKFDHADRTFSSISRAWRNSQRDTSDIKELIPEFYYLPE---MFV 297
Query: 426 NSYGIHFGYRYDGTKVGGVQLPPWAECPEVFVTKLRQALESDIVSRQLHLWIDLIFGYKQ 485
N + G DGT V V+LPPWA+ E FV R ALES+ VS QLH WIDLIFGYKQ
Sbjct: 298 NFNNYNLGVMDDGTVVSDVELPPWAKTSEEFVHINRLALESEFVSCQLHQWIDLIFGYKQ 357
Query: 486 RGVEAEKADNLFYYLCYEGSVNLDMVQDWNQRHALEVQIMEFGQIPKQIFHSPHPRR 542
+G EA +A N+FYYL YEG+VNL+ + D R A+E QI FGQ P Q+ PHP R
Sbjct: 358 QGPEAVRALNVFYYLTYEGAVNLNSITDPVLREAVEAQIRSFGQTPSQLLIEPHPPR 414
>pdb|1MI1|A Chain A, Crystal Structure Of The Ph-Beach Domain Of Human
Neurobeachin
pdb|1MI1|B Chain B, Crystal Structure Of The Ph-Beach Domain Of Human
Neurobeachin
Length = 414
Score = 300 bits (769), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 177/417 (42%), Positives = 230/417 (55%), Gaps = 37/417 (8%)
Query: 158 VILETFGNKITPLVVNPGRIVLSSTNLYFQ------PFNNIEPHKLL-------KVRLAG 204
V+L T I P+VV G + +++T +YF+ F I+ L K +
Sbjct: 3 VVLSTPAQLIAPVVVAKGTLSITTTEIYFEVDEDDSAFKKIDTKVLAYTEGLHGKWXFSE 62
Query: 205 IKRIIRRRFLLQQVGIEIY----------FKDLEPVKYLYLTLKTQGARDTLYNALLDLP 254
I+ + RR+LLQ +E++ F D VK + +L G + L
Sbjct: 63 IRAVFSRRYLLQNTALEVFXANRTSVXFNFPDQATVKKVVYSLPRVGVGTSY--GLPQAR 120
Query: 255 ELQLSHSDQ----EIMTLRWQNGALSNYDYLMYLNSLADRSLNDLTQYPVFPWVISNYTC 310
+ L+ Q T RWQ +SN++YL +LN++A R+ NDL QYPVFPWV++NY
Sbjct: 121 RISLATPRQLYKSSNXTQRWQRREISNFEYLXFLNTIAGRTYNDLNQYPVFPWVLTNYES 180
Query: 311 DTLDLSDSNNYRDLSKPIGALNPTRLERLKERYN---EMPHPKFLYGSHYSTPGFVLFYL 367
+ LDL+ N+RDLSKPIGALNP R ERY + P + Y +HYST L +L
Sbjct: 181 EELDLTLPGNFRDLSKPIGALNPKRAVFYAERYETWEDDQSPPYHYNTHYSTATSTLSWL 240
Query: 368 VR--KFPQYMLCLQNGRFDHPDRMFNSIPDIWRNVLTNMSDFKELVPEFYDTEQKGDFLE 425
VR F + L +G+FDHPDR F+S+ WR + SD KEL+PEFY +
Sbjct: 241 VRIEPFTTFFLNANDGKFDHPDRTFSSVARSWRTSQRDTSDVKELIPEFYYLPEX---FV 297
Query: 426 NSYGIHFGYRYDGTKVGGVQLPPWAECPEVFVTKLRQALESDIVSRQLHLWIDLIFGYKQ 485
NS G + G R D V V LPPWA+ PE FV R ALES+ VS QLH WIDLIFGYKQ
Sbjct: 298 NSNGYNLGVREDEVVVNDVDLPPWAKKPEDFVRINRXALESEFVSCQLHQWIDLIFGYKQ 357
Query: 486 RGVEAEKADNLFYYLCYEGSVNLDMVQDWNQRHALEVQIMEFGQIPKQIFHSPHPRR 542
RG EA +A N+F+YL YEGSVNLD + D R A E QI FGQ P Q+ PHP R
Sbjct: 358 RGPEAVRALNVFHYLTYEGSVNLDSITDPVLREAXEAQIQNFGQTPSQLLIEPHPPR 414
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 83.6 bits (205), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 62/272 (22%), Positives = 131/272 (48%), Gaps = 16/272 (5%)
Query: 579 HKEAITAVAICGEGISVASVGRDAMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTML 638
H +A+++V G +AS D ++KI G+ E++ + +S + D+ ++
Sbjct: 28 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLV 87
Query: 639 VGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWS 698
D + I+DV G+ + L GH + + C ++ + ++SGS+D +VR+W+
Sbjct: 88 SASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD------ 141
Query: 699 HMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGELIIWSLENHLMTQQLSDDINAS 758
+K K L + + + + ++D + + + G IW + + L DD N
Sbjct: 142 -VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP 200
Query: 759 VNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCNKVF---EEKLLCL----SWAGEEKV 811
V+ V FS +G +L+ + L ++D + G C K + + + C+ S G + +
Sbjct: 201 VSFVKFSPNGKYILAATLDNTLKLWDYSKGK--CLKTYTGHKNEKYCIFANFSVTGGKWI 258
Query: 812 ILGGALGMVYLVDLIQVQLLKQVRAHKDAVLS 843
+ G +VY+ +L +++++++ H D V+S
Sbjct: 259 VSGSEDNLVYIWNLQTKEIVQKLQGHTDVVIS 290
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 57/273 (20%), Positives = 108/273 (39%), Gaps = 52/273 (19%)
Query: 660 LAGHEDAISCVAWDEKRKRLISGSWDCTVRVWN-----------------TGASWSH--- 699
LAGH A+S V + + L S S D +++W + +WS
Sbjct: 25 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 84
Query: 700 ---------------MKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGELIIWSLEN 744
+ K L + N + C + +N + G+ + IW ++
Sbjct: 85 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 144
Query: 745 HLMTQQL---SDDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCNKVFEEK-- 799
+ L SD ++A V F+ DG ++S + + ++D +G + + ++
Sbjct: 145 GKCLKTLPAHSDPVSA----VHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP 200
Query: 800 LLCLSWAGEEKVILGGAL-GMVYLVDLIQVQLLKQVRAHKDAVLSLHFDNCTMLVGCW-- 856
+ + ++ K IL L + L D + + LK HK+ + F N ++ G W
Sbjct: 201 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI-FANFSVTGGKWIV 259
Query: 857 ----DSCVVIYDVECGRIVTELAGHEDAISCVA 885
D+ V I++++ IV +L GH D + A
Sbjct: 260 SGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTA 292
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/156 (21%), Positives = 73/156 (46%), Gaps = 8/156 (5%)
Query: 758 SVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCNKVFEEKLLCLS---WAGEEKVILG 814
+V+ V FS +G + S + ++ ++ G K L +S W+ + +++
Sbjct: 31 AVSSVKFSPNGEWLASSSADKLIKIWGAYDGK--FEKTISGHKLGISDVAWSSDSNLLVS 88
Query: 815 GALGMVYLV-DLIQVQLLKQVRAHKDAVLSLHFDNCTMLV--GCWDSCVVIYDVECGRIV 871
+ + D+ + LK ++ H + V +F+ + L+ G +D V I+DV+ G+ +
Sbjct: 89 ASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCL 148
Query: 872 TELAGHEDAISCVAWDEKRKRLISGNLVGAPKLYAT 907
L H D +S V ++ ++S + G +++ T
Sbjct: 149 KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 184
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 83.2 bits (204), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 62/272 (22%), Positives = 131/272 (48%), Gaps = 16/272 (5%)
Query: 579 HKEAITAVAICGEGISVASVGRDAMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTML 638
H +A+++V G +AS D ++KI G+ E++ + +S + D+ ++
Sbjct: 44 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLV 103
Query: 639 VGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWS 698
D + I+DV G+ + L GH + + C ++ + ++SGS+D +VR+W+
Sbjct: 104 SASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD------ 157
Query: 699 HMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGELIIWSLENHLMTQQLSDDINAS 758
+K K L + + + + ++D + + + G IW + + L DD N
Sbjct: 158 -VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP 216
Query: 759 VNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCNKVF---EEKLLCL----SWAGEEKV 811
V+ V FS +G +L+ + L ++D + G C K + + + C+ S G + +
Sbjct: 217 VSFVKFSPNGKYILAATLDNTLKLWDYSKGK--CLKTYTGHKNEKYCIFANFSVTGGKWI 274
Query: 812 ILGGALGMVYLVDLIQVQLLKQVRAHKDAVLS 843
+ G +VY+ +L +++++++ H D V+S
Sbjct: 275 VSGSEDNLVYIWNLQTKEIVQKLQGHTDVVIS 306
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 55/270 (20%), Positives = 106/270 (39%), Gaps = 46/270 (17%)
Query: 660 LAGHEDAISCVAWDEKRKRLISGSWDCTVRVWN-----------------TGASWSH--- 699
LAGH A+S V + + L S S D +++W + +WS
Sbjct: 41 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 100
Query: 700 ---------------MKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGELIIWSLEN 744
+ K L + N + C + +N + G+ + IW ++
Sbjct: 101 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 160
Query: 745 HLMTQQLSDDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCNKVFEEK--LLC 802
+ L + V+ V F+ DG ++S + + ++D +G + + ++ +
Sbjct: 161 GKCLKTLPAHSDP-VSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSF 219
Query: 803 LSWAGEEKVILGGAL-GMVYLVDLIQVQLLKQVRAHKDAVLSLHFDNCTMLVGCW----- 856
+ ++ K IL L + L D + + LK HK+ + F N ++ G W
Sbjct: 220 VKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI-FANFSVTGGKWIVSGS 278
Query: 857 -DSCVVIYDVECGRIVTELAGHEDAISCVA 885
D+ V I++++ IV +L GH D + A
Sbjct: 279 EDNLVYIWNLQTKEIVQKLQGHTDVVISTA 308
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/156 (21%), Positives = 73/156 (46%), Gaps = 8/156 (5%)
Query: 758 SVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCNKVFEEKLLCLS---WAGEEKVILG 814
+V+ V FS +G + S + ++ ++ G K L +S W+ + +++
Sbjct: 47 AVSSVKFSPNGEWLASSSADKLIKIWGAYDGK--FEKTISGHKLGISDVAWSSDSNLLVS 104
Query: 815 GALGMVYLV-DLIQVQLLKQVRAHKDAVLSLHFDNCTMLV--GCWDSCVVIYDVECGRIV 871
+ + D+ + LK ++ H + V +F+ + L+ G +D V I+DV+ G+ +
Sbjct: 105 ASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCL 164
Query: 872 TELAGHEDAISCVAWDEKRKRLISGNLVGAPKLYAT 907
L H D +S V ++ ++S + G +++ T
Sbjct: 165 KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 200
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 82.8 bits (203), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 62/272 (22%), Positives = 131/272 (48%), Gaps = 16/272 (5%)
Query: 579 HKEAITAVAICGEGISVASVGRDAMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTML 638
H +A+++V G +AS D ++KI G+ E++ + +S + D+ ++
Sbjct: 39 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLV 98
Query: 639 VGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWS 698
D + I+DV G+ + L GH + + C ++ + ++SGS+D +VR+W+
Sbjct: 99 SASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD------ 152
Query: 699 HMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGELIIWSLENHLMTQQLSDDINAS 758
+K K L + + + + ++D + + + G IW + + L DD N
Sbjct: 153 -VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP 211
Query: 759 VNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCNKVF---EEKLLCL----SWAGEEKV 811
V+ V FS +G +L+ + L ++D + G C K + + + C+ S G + +
Sbjct: 212 VSFVKFSPNGKYILAATLDNTLKLWDYSKGK--CLKTYTGHKNEKYCIFANFSVTGGKWI 269
Query: 812 ILGGALGMVYLVDLIQVQLLKQVRAHKDAVLS 843
+ G +VY+ +L +++++++ H D V+S
Sbjct: 270 VSGSEDNLVYIWNLQTKEIVQKLQGHTDVVIS 301
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 57/273 (20%), Positives = 108/273 (39%), Gaps = 52/273 (19%)
Query: 660 LAGHEDAISCVAWDEKRKRLISGSWDCTVRVWN-----------------TGASWSH--- 699
LAGH A+S V + + L S S D +++W + +WS
Sbjct: 36 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 95
Query: 700 ---------------MKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGELIIWSLEN 744
+ K L + N + C + +N + G+ + IW ++
Sbjct: 96 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 155
Query: 745 HLMTQQL---SDDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCNKVFEEK-- 799
+ L SD ++A V F+ DG ++S + + ++D +G + + ++
Sbjct: 156 GKCLKTLPAHSDPVSA----VHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP 211
Query: 800 LLCLSWAGEEKVILGGAL-GMVYLVDLIQVQLLKQVRAHKDAVLSLHFDNCTMLVGCW-- 856
+ + ++ K IL L + L D + + LK HK+ + F N ++ G W
Sbjct: 212 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI-FANFSVTGGKWIV 270
Query: 857 ----DSCVVIYDVECGRIVTELAGHEDAISCVA 885
D+ V I++++ IV +L GH D + A
Sbjct: 271 SGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTA 303
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/156 (21%), Positives = 73/156 (46%), Gaps = 8/156 (5%)
Query: 758 SVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCNKVFEEKLLCLS---WAGEEKVILG 814
+V+ V FS +G + S + ++ ++ G K L +S W+ + +++
Sbjct: 42 AVSSVKFSPNGEWLASSSADKLIKIWGAYDGK--FEKTISGHKLGISDVAWSSDSNLLVS 99
Query: 815 GALGMVYLV-DLIQVQLLKQVRAHKDAVLSLHFDNCTMLV--GCWDSCVVIYDVECGRIV 871
+ + D+ + LK ++ H + V +F+ + L+ G +D V I+DV+ G+ +
Sbjct: 100 ASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCL 159
Query: 872 TELAGHEDAISCVAWDEKRKRLISGNLVGAPKLYAT 907
L H D +S V ++ ++S + G +++ T
Sbjct: 160 KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 195
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 82.8 bits (203), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 62/272 (22%), Positives = 131/272 (48%), Gaps = 16/272 (5%)
Query: 579 HKEAITAVAICGEGISVASVGRDAMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTML 638
H +A+++V G +AS D ++KI G+ E++ + +S + D+ ++
Sbjct: 46 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLV 105
Query: 639 VGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWS 698
D + I+DV G+ + L GH + + C ++ + ++SGS+D +VR+W+
Sbjct: 106 SASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD------ 159
Query: 699 HMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGELIIWSLENHLMTQQLSDDINAS 758
+K K L + + + + ++D + + + G IW + + L DD N
Sbjct: 160 -VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP 218
Query: 759 VNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCNKVF---EEKLLCL----SWAGEEKV 811
V+ V FS +G +L+ + L ++D + G C K + + + C+ S G + +
Sbjct: 219 VSFVKFSPNGKYILAATLDNTLKLWDYSKGK--CLKTYTGHKNEKYCIFANFSVTGGKWI 276
Query: 812 ILGGALGMVYLVDLIQVQLLKQVRAHKDAVLS 843
+ G +VY+ +L +++++++ H D V+S
Sbjct: 277 VSGSEDNLVYIWNLQTKEIVQKLQGHTDVVIS 308
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 57/273 (20%), Positives = 108/273 (39%), Gaps = 52/273 (19%)
Query: 660 LAGHEDAISCVAWDEKRKRLISGSWDCTVRVWN-----------------TGASWSH--- 699
LAGH A+S V + + L S S D +++W + +WS
Sbjct: 43 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 102
Query: 700 ---------------MKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGELIIWSLEN 744
+ K L + N + C + +N + G+ + IW ++
Sbjct: 103 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 162
Query: 745 HLMTQQL---SDDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCNKVFEEK-- 799
+ L SD ++A V F+ DG ++S + + ++D +G + + ++
Sbjct: 163 GKCLKTLPAHSDPVSA----VHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP 218
Query: 800 LLCLSWAGEEKVILGGAL-GMVYLVDLIQVQLLKQVRAHKDAVLSLHFDNCTMLVGCW-- 856
+ + ++ K IL L + L D + + LK HK+ + F N ++ G W
Sbjct: 219 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI-FANFSVTGGKWIV 277
Query: 857 ----DSCVVIYDVECGRIVTELAGHEDAISCVA 885
D+ V I++++ IV +L GH D + A
Sbjct: 278 SGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTA 310
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/156 (21%), Positives = 73/156 (46%), Gaps = 8/156 (5%)
Query: 758 SVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCNKVFEEKLLCLS---WAGEEKVILG 814
+V+ V FS +G + S + ++ ++ G K L +S W+ + +++
Sbjct: 49 AVSSVKFSPNGEWLASSSADKLIKIWGAYDGK--FEKTISGHKLGISDVAWSSDSNLLVS 106
Query: 815 GALGMVYLV-DLIQVQLLKQVRAHKDAVLSLHFDNCTMLV--GCWDSCVVIYDVECGRIV 871
+ + D+ + LK ++ H + V +F+ + L+ G +D V I+DV+ G+ +
Sbjct: 107 ASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCL 166
Query: 872 TELAGHEDAISCVAWDEKRKRLISGNLVGAPKLYAT 907
L H D +S V ++ ++S + G +++ T
Sbjct: 167 KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 202
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 82.8 bits (203), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 62/272 (22%), Positives = 131/272 (48%), Gaps = 16/272 (5%)
Query: 579 HKEAITAVAICGEGISVASVGRDAMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTML 638
H +A+++V G +AS D ++KI G+ E++ + +S + D+ ++
Sbjct: 22 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLV 81
Query: 639 VGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWS 698
D + I+DV G+ + L GH + + C ++ + ++SGS+D +VR+W+
Sbjct: 82 SASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD------ 135
Query: 699 HMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGELIIWSLENHLMTQQLSDDINAS 758
+K K L + + + + ++D + + + G IW + + L DD N
Sbjct: 136 -VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP 194
Query: 759 VNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCNKVF---EEKLLCL----SWAGEEKV 811
V+ V FS +G +L+ + L ++D + G C K + + + C+ S G + +
Sbjct: 195 VSFVKFSPNGKYILAATLDNTLKLWDYSKGK--CLKTYTGHKNEKYCIFANFSVTGGKWI 252
Query: 812 ILGGALGMVYLVDLIQVQLLKQVRAHKDAVLS 843
+ G +VY+ +L +++++++ H D V+S
Sbjct: 253 VSGSEDNLVYIWNLQTKEIVQKLQGHTDVVIS 284
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 57/273 (20%), Positives = 108/273 (39%), Gaps = 52/273 (19%)
Query: 660 LAGHEDAISCVAWDEKRKRLISGSWDCTVRVWN-----------------TGASWSH--- 699
LAGH A+S V + + L S S D +++W + +WS
Sbjct: 19 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 78
Query: 700 ---------------MKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGELIIWSLEN 744
+ K L + N + C + +N + G+ + IW ++
Sbjct: 79 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 138
Query: 745 HLMTQQL---SDDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCNKVFEEK-- 799
+ L SD ++A V F+ DG ++S + + ++D +G + + ++
Sbjct: 139 GKCLKTLPAHSDPVSA----VHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP 194
Query: 800 LLCLSWAGEEKVILGGAL-GMVYLVDLIQVQLLKQVRAHKDAVLSLHFDNCTMLVGCW-- 856
+ + ++ K IL L + L D + + LK HK+ + F N ++ G W
Sbjct: 195 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI-FANFSVTGGKWIV 253
Query: 857 ----DSCVVIYDVECGRIVTELAGHEDAISCVA 885
D+ V I++++ IV +L GH D + A
Sbjct: 254 SGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTA 286
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 33/156 (21%), Positives = 73/156 (46%), Gaps = 8/156 (5%)
Query: 758 SVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCNKVFEEKLLCLS---WAGEEKVILG 814
+V+ V FS +G + S + ++ ++ G K L +S W+ + +++
Sbjct: 25 AVSSVKFSPNGEWLASSSADKLIKIWGAYDGK--FEKTISGHKLGISDVAWSSDSNLLVS 82
Query: 815 GALGMVYLV-DLIQVQLLKQVRAHKDAVLSLHFDNCTMLV--GCWDSCVVIYDVECGRIV 871
+ + D+ + LK ++ H + V +F+ + L+ G +D V I+DV+ G+ +
Sbjct: 83 ASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCL 142
Query: 872 TELAGHEDAISCVAWDEKRKRLISGNLVGAPKLYAT 907
L H D +S V ++ ++S + G +++ T
Sbjct: 143 KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 178
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 82.8 bits (203), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 62/272 (22%), Positives = 131/272 (48%), Gaps = 16/272 (5%)
Query: 579 HKEAITAVAICGEGISVASVGRDAMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTML 638
H +A+++V G +AS D ++KI G+ E++ + +S + D+ ++
Sbjct: 18 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLV 77
Query: 639 VGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWS 698
D + I+DV G+ + L GH + + C ++ + ++SGS+D +VR+W+
Sbjct: 78 SASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD------ 131
Query: 699 HMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGELIIWSLENHLMTQQLSDDINAS 758
+K K L + + + + ++D + + + G IW + + L DD N
Sbjct: 132 -VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP 190
Query: 759 VNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCNKVF---EEKLLCL----SWAGEEKV 811
V+ V FS +G +L+ + L ++D + G C K + + + C+ S G + +
Sbjct: 191 VSFVKFSPNGKYILAATLDNTLKLWDYSKGK--CLKTYTGHKNEKYCIFANFSVTGGKWI 248
Query: 812 ILGGALGMVYLVDLIQVQLLKQVRAHKDAVLS 843
+ G +VY+ +L +++++++ H D V+S
Sbjct: 249 VSGSEDNLVYIWNLQTKEIVQKLQGHTDVVIS 280
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 57/273 (20%), Positives = 108/273 (39%), Gaps = 52/273 (19%)
Query: 660 LAGHEDAISCVAWDEKRKRLISGSWDCTVRVWN-----------------TGASWSH--- 699
LAGH A+S V + + L S S D +++W + +WS
Sbjct: 15 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 74
Query: 700 ---------------MKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGELIIWSLEN 744
+ K L + N + C + +N + G+ + IW ++
Sbjct: 75 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 134
Query: 745 HLMTQQL---SDDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCNKVFEEK-- 799
+ L SD ++A V F+ DG ++S + + ++D +G + + ++
Sbjct: 135 GKCLKTLPAHSDPVSA----VHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP 190
Query: 800 LLCLSWAGEEKVILGGAL-GMVYLVDLIQVQLLKQVRAHKDAVLSLHFDNCTMLVGCW-- 856
+ + ++ K IL L + L D + + LK HK+ + F N ++ G W
Sbjct: 191 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI-FANFSVTGGKWIV 249
Query: 857 ----DSCVVIYDVECGRIVTELAGHEDAISCVA 885
D+ V I++++ IV +L GH D + A
Sbjct: 250 SGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTA 282
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 33/156 (21%), Positives = 73/156 (46%), Gaps = 8/156 (5%)
Query: 758 SVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCNKVFEEKLLCLS---WAGEEKVILG 814
+V+ V FS +G + S + ++ ++ G K L +S W+ + +++
Sbjct: 21 AVSSVKFSPNGEWLASSSADKLIKIWGAYDGK--FEKTISGHKLGISDVAWSSDSNLLVS 78
Query: 815 GALGMVYLV-DLIQVQLLKQVRAHKDAVLSLHFDNCTMLV--GCWDSCVVIYDVECGRIV 871
+ + D+ + LK ++ H + V +F+ + L+ G +D V I+DV+ G+ +
Sbjct: 79 ASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCL 138
Query: 872 TELAGHEDAISCVAWDEKRKRLISGNLVGAPKLYAT 907
L H D +S V ++ ++S + G +++ T
Sbjct: 139 KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 174
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 82.4 bits (202), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 62/272 (22%), Positives = 131/272 (48%), Gaps = 16/272 (5%)
Query: 579 HKEAITAVAICGEGISVASVGRDAMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTML 638
H +A+++V G +AS D ++KI G+ E++ + +S + D+ ++
Sbjct: 22 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLV 81
Query: 639 VGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWS 698
D + I+DV G+ + L GH + + C ++ + ++SGS+D +VR+W+
Sbjct: 82 SASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD------ 135
Query: 699 HMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGELIIWSLENHLMTQQLSDDINAS 758
+K K L + + + + ++D + + + G IW + + L DD N
Sbjct: 136 -VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP 194
Query: 759 VNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCNKVF---EEKLLCL----SWAGEEKV 811
V+ V FS +G +L+ + L ++D + G C K + + + C+ S G + +
Sbjct: 195 VSFVKFSPNGKYILAATLDNTLKLWDYSKGK--CLKTYTGHKNEKYCIFANFSVTGGKWI 252
Query: 812 ILGGALGMVYLVDLIQVQLLKQVRAHKDAVLS 843
+ G +VY+ +L +++++++ H D V+S
Sbjct: 253 VSGSEDNLVYIWNLQTKEIVQKLQGHTDVVIS 284
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 57/273 (20%), Positives = 108/273 (39%), Gaps = 52/273 (19%)
Query: 660 LAGHEDAISCVAWDEKRKRLISGSWDCTVRVWN-----------------TGASWSH--- 699
LAGH A+S V + + L S S D +++W + +WS
Sbjct: 19 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 78
Query: 700 ---------------MKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGELIIWSLEN 744
+ K L + N + C + +N + G+ + IW ++
Sbjct: 79 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 138
Query: 745 HLMTQQL---SDDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCNKVFEEK-- 799
+ L SD ++A V F+ DG ++S + + ++D +G + + ++
Sbjct: 139 GKCLKTLPAHSDPVSA----VHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP 194
Query: 800 LLCLSWAGEEKVILGGAL-GMVYLVDLIQVQLLKQVRAHKDAVLSLHFDNCTMLVGCW-- 856
+ + ++ K IL L + L D + + LK HK+ + F N ++ G W
Sbjct: 195 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI-FANFSVTGGKWIV 253
Query: 857 ----DSCVVIYDVECGRIVTELAGHEDAISCVA 885
D+ V I++++ IV +L GH D + A
Sbjct: 254 SGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTA 286
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 33/156 (21%), Positives = 73/156 (46%), Gaps = 8/156 (5%)
Query: 758 SVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCNKVFEEKLLCLS---WAGEEKVILG 814
+V+ V FS +G + S + ++ ++ G K L +S W+ + +++
Sbjct: 25 AVSSVKFSPNGEWLASSSADKLIKIWGAYDGK--FEKTISGHKLGISDVAWSSDSNLLVS 82
Query: 815 GALGMVYLV-DLIQVQLLKQVRAHKDAVLSLHFDNCTMLV--GCWDSCVVIYDVECGRIV 871
+ + D+ + LK ++ H + V +F+ + L+ G +D V I+DV+ G+ +
Sbjct: 83 ASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCL 142
Query: 872 TELAGHEDAISCVAWDEKRKRLISGNLVGAPKLYAT 907
L H D +S V ++ ++S + G +++ T
Sbjct: 143 KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 178
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 82.4 bits (202), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 62/272 (22%), Positives = 131/272 (48%), Gaps = 16/272 (5%)
Query: 579 HKEAITAVAICGEGISVASVGRDAMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTML 638
H +A+++V G +AS D ++KI G+ E++ + +S + D+ ++
Sbjct: 28 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLV 87
Query: 639 VGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWS 698
D + I+DV G+ + L GH + + C ++ + ++SGS+D +VR+W+
Sbjct: 88 SASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD------ 141
Query: 699 HMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGELIIWSLENHLMTQQLSDDINAS 758
+K K L + + + + ++D + + + G IW + + L DD N
Sbjct: 142 -VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP 200
Query: 759 VNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCNKVF---EEKLLCL----SWAGEEKV 811
V+ V FS +G +L+ + L ++D + G C K + + + C+ S G + +
Sbjct: 201 VSFVKFSPNGKYILAATLDNTLKLWDYSKGK--CLKTYTGHKNEKYCIFANFSVTGGKWI 258
Query: 812 ILGGALGMVYLVDLIQVQLLKQVRAHKDAVLS 843
+ G +VY+ +L +++++++ H D V+S
Sbjct: 259 VSGSEDNLVYIWNLQTKEIVQKLQGHTDVVIS 290
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 57/273 (20%), Positives = 108/273 (39%), Gaps = 52/273 (19%)
Query: 660 LAGHEDAISCVAWDEKRKRLISGSWDCTVRVWN-----------------TGASWSH--- 699
LAGH A+S V + + L S S D +++W + +WS
Sbjct: 25 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 84
Query: 700 ---------------MKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGELIIWSLEN 744
+ K L + N + C + +N + G+ + IW ++
Sbjct: 85 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 144
Query: 745 HLMTQQL---SDDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCNKVFEEK-- 799
+ L SD ++A V F+ DG ++S + + ++D +G + + ++
Sbjct: 145 GKCLKTLPAHSDPVSA----VHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP 200
Query: 800 LLCLSWAGEEKVILGGAL-GMVYLVDLIQVQLLKQVRAHKDAVLSLHFDNCTMLVGCW-- 856
+ + ++ K IL L + L D + + LK HK+ + F N ++ G W
Sbjct: 201 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI-FANFSVTGGKWIV 259
Query: 857 ----DSCVVIYDVECGRIVTELAGHEDAISCVA 885
D+ V I++++ IV +L GH D + A
Sbjct: 260 SGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTA 292
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 33/156 (21%), Positives = 73/156 (46%), Gaps = 8/156 (5%)
Query: 758 SVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCNKVFEEKLLCLS---WAGEEKVILG 814
+V+ V FS +G + S + ++ ++ G K L +S W+ + +++
Sbjct: 31 AVSSVKFSPNGEWLASSSADKLIKIWGAYDGK--FEKTISGHKLGISDVAWSSDSNLLVS 88
Query: 815 GALGMVYLV-DLIQVQLLKQVRAHKDAVLSLHFDNCTMLV--GCWDSCVVIYDVECGRIV 871
+ + D+ + LK ++ H + V +F+ + L+ G +D V I+DV+ G+ +
Sbjct: 89 ASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCL 148
Query: 872 TELAGHEDAISCVAWDEKRKRLISGNLVGAPKLYAT 907
L H D +S V ++ ++S + G +++ T
Sbjct: 149 KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 184
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 82.4 bits (202), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 62/272 (22%), Positives = 131/272 (48%), Gaps = 16/272 (5%)
Query: 579 HKEAITAVAICGEGISVASVGRDAMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTML 638
H +A+++V G +AS D ++KI G+ E++ + +S + D+ ++
Sbjct: 23 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLV 82
Query: 639 VGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWS 698
D + I+DV G+ + L GH + + C ++ + ++SGS+D +VR+W+
Sbjct: 83 SASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD------ 136
Query: 699 HMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGELIIWSLENHLMTQQLSDDINAS 758
+K K L + + + + ++D + + + G IW + + L DD N
Sbjct: 137 -VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP 195
Query: 759 VNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCNKVF---EEKLLCL----SWAGEEKV 811
V+ V FS +G +L+ + L ++D + G C K + + + C+ S G + +
Sbjct: 196 VSFVKFSPNGKYILAATLDNTLKLWDYSKGK--CLKTYTGHKNEKYCIFANFSVTGGKWI 253
Query: 812 ILGGALGMVYLVDLIQVQLLKQVRAHKDAVLS 843
+ G +VY+ +L +++++++ H D V+S
Sbjct: 254 VSGSEDNLVYIWNLQTKEIVQKLQGHTDVVIS 285
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 57/273 (20%), Positives = 108/273 (39%), Gaps = 52/273 (19%)
Query: 660 LAGHEDAISCVAWDEKRKRLISGSWDCTVRVWN-----------------TGASWSH--- 699
LAGH A+S V + + L S S D +++W + +WS
Sbjct: 20 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 79
Query: 700 ---------------MKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGELIIWSLEN 744
+ K L + N + C + +N + G+ + IW ++
Sbjct: 80 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 139
Query: 745 HLMTQQL---SDDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCNKVFEEK-- 799
+ L SD ++A V F+ DG ++S + + ++D +G + + ++
Sbjct: 140 GKCLKTLPAHSDPVSA----VHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP 195
Query: 800 LLCLSWAGEEKVILGGAL-GMVYLVDLIQVQLLKQVRAHKDAVLSLHFDNCTMLVGCW-- 856
+ + ++ K IL L + L D + + LK HK+ + F N ++ G W
Sbjct: 196 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI-FANFSVTGGKWIV 254
Query: 857 ----DSCVVIYDVECGRIVTELAGHEDAISCVA 885
D+ V I++++ IV +L GH D + A
Sbjct: 255 SGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTA 287
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 33/156 (21%), Positives = 73/156 (46%), Gaps = 8/156 (5%)
Query: 758 SVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCNKVFEEKLLCLS---WAGEEKVILG 814
+V+ V FS +G + S + ++ ++ G K L +S W+ + +++
Sbjct: 26 AVSSVKFSPNGEWLASSSADKLIKIWGAYDGK--FEKTISGHKLGISDVAWSSDSNLLVS 83
Query: 815 GALGMVYLV-DLIQVQLLKQVRAHKDAVLSLHFDNCTMLV--GCWDSCVVIYDVECGRIV 871
+ + D+ + LK ++ H + V +F+ + L+ G +D V I+DV+ G+ +
Sbjct: 84 ASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCL 143
Query: 872 TELAGHEDAISCVAWDEKRKRLISGNLVGAPKLYAT 907
L H D +S V ++ ++S + G +++ T
Sbjct: 144 KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 179
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 82.4 bits (202), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 62/272 (22%), Positives = 131/272 (48%), Gaps = 16/272 (5%)
Query: 579 HKEAITAVAICGEGISVASVGRDAMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTML 638
H +A+++V G +AS D ++KI G+ E++ + +S + D+ ++
Sbjct: 21 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLV 80
Query: 639 VGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWS 698
D + I+DV G+ + L GH + + C ++ + ++SGS+D +VR+W+
Sbjct: 81 SASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD------ 134
Query: 699 HMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGELIIWSLENHLMTQQLSDDINAS 758
+K K L + + + + ++D + + + G IW + + L DD N
Sbjct: 135 -VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP 193
Query: 759 VNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCNKVF---EEKLLCL----SWAGEEKV 811
V+ V FS +G +L+ + L ++D + G C K + + + C+ S G + +
Sbjct: 194 VSFVKFSPNGKYILAATLDNTLKLWDYSKGK--CLKTYTGHKNEKYCIFANFSVTGGKWI 251
Query: 812 ILGGALGMVYLVDLIQVQLLKQVRAHKDAVLS 843
+ G +VY+ +L +++++++ H D V+S
Sbjct: 252 VSGSEDNLVYIWNLQTKEIVQKLQGHTDVVIS 283
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 57/273 (20%), Positives = 108/273 (39%), Gaps = 52/273 (19%)
Query: 660 LAGHEDAISCVAWDEKRKRLISGSWDCTVRVWN-----------------TGASWSH--- 699
LAGH A+S V + + L S S D +++W + +WS
Sbjct: 18 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 77
Query: 700 ---------------MKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGELIIWSLEN 744
+ K L + N + C + +N + G+ + IW ++
Sbjct: 78 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 137
Query: 745 HLMTQQL---SDDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCNKVFEEK-- 799
+ L SD ++A V F+ DG ++S + + ++D +G + + ++
Sbjct: 138 GKCLKTLPAHSDPVSA----VHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP 193
Query: 800 LLCLSWAGEEKVILGGAL-GMVYLVDLIQVQLLKQVRAHKDAVLSLHFDNCTMLVGCW-- 856
+ + ++ K IL L + L D + + LK HK+ + F N ++ G W
Sbjct: 194 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI-FANFSVTGGKWIV 252
Query: 857 ----DSCVVIYDVECGRIVTELAGHEDAISCVA 885
D+ V I++++ IV +L GH D + A
Sbjct: 253 SGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTA 285
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 33/156 (21%), Positives = 73/156 (46%), Gaps = 8/156 (5%)
Query: 758 SVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCNKVFEEKLLCLS---WAGEEKVILG 814
+V+ V FS +G + S + ++ ++ G K L +S W+ + +++
Sbjct: 24 AVSSVKFSPNGEWLASSSADKLIKIWGAYDGK--FEKTISGHKLGISDVAWSSDSNLLVS 81
Query: 815 GALGMVYLV-DLIQVQLLKQVRAHKDAVLSLHFDNCTMLV--GCWDSCVVIYDVECGRIV 871
+ + D+ + LK ++ H + V +F+ + L+ G +D V I+DV+ G+ +
Sbjct: 82 ASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCL 141
Query: 872 TELAGHEDAISCVAWDEKRKRLISGNLVGAPKLYAT 907
L H D +S V ++ ++S + G +++ T
Sbjct: 142 KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 177
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 82.0 bits (201), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 62/272 (22%), Positives = 131/272 (48%), Gaps = 16/272 (5%)
Query: 579 HKEAITAVAICGEGISVASVGRDAMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTML 638
H +A+++V G +AS D ++KI G+ E++ + +S + D+ ++
Sbjct: 28 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLV 87
Query: 639 VGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWS 698
D + I+DV G+ + L GH + + C ++ + ++SGS+D +VR+W+
Sbjct: 88 SASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD------ 141
Query: 699 HMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGELIIWSLENHLMTQQLSDDINAS 758
+K K L + + + + ++D + + + G IW + + L DD N
Sbjct: 142 -VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP 200
Query: 759 VNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCNKVF---EEKLLCL----SWAGEEKV 811
V+ V FS +G +L+ + L ++D + G C K + + + C+ S G + +
Sbjct: 201 VSFVKFSPNGKYILAATLDNTLKLWDYSKGK--CLKTYTGHKNEKYCIFANFSVTGGKWI 258
Query: 812 ILGGALGMVYLVDLIQVQLLKQVRAHKDAVLS 843
+ G +VY+ +L +++++++ H D V+S
Sbjct: 259 VSGSEDNLVYIWNLQTKEIVQKLQGHTDVVIS 290
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 57/273 (20%), Positives = 108/273 (39%), Gaps = 52/273 (19%)
Query: 660 LAGHEDAISCVAWDEKRKRLISGSWDCTVRVWN-----------------TGASWSH--- 699
LAGH A+S V + + L S S D +++W + +WS
Sbjct: 25 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 84
Query: 700 ---------------MKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGELIIWSLEN 744
+ K L + N + C + +N + G+ + IW ++
Sbjct: 85 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 144
Query: 745 HLMTQQL---SDDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCNKVFEEK-- 799
+ L SD ++A V F+ DG ++S + + ++D +G + + ++
Sbjct: 145 GKCLKTLPAHSDPVSA----VHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP 200
Query: 800 LLCLSWAGEEKVILGGAL-GMVYLVDLIQVQLLKQVRAHKDAVLSLHFDNCTMLVGCW-- 856
+ + ++ K IL L + L D + + LK HK+ + F N ++ G W
Sbjct: 201 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI-FANFSVTGGKWIV 259
Query: 857 ----DSCVVIYDVECGRIVTELAGHEDAISCVA 885
D+ V I++++ IV +L GH D + A
Sbjct: 260 SGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTA 292
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 33/156 (21%), Positives = 73/156 (46%), Gaps = 8/156 (5%)
Query: 758 SVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCNKVFEEKLLCLS---WAGEEKVILG 814
+V+ V FS +G + S + ++ ++ G K L +S W+ + +++
Sbjct: 31 AVSSVKFSPNGEWLASSSADKLIKIWGAYDGK--FEKTISGHKLGISDVAWSSDSNLLVS 88
Query: 815 GALGMVYLV-DLIQVQLLKQVRAHKDAVLSLHFDNCTMLV--GCWDSCVVIYDVECGRIV 871
+ + D+ + LK ++ H + V +F+ + L+ G +D V I+DV+ G+ +
Sbjct: 89 ASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCL 148
Query: 872 TELAGHEDAISCVAWDEKRKRLISGNLVGAPKLYAT 907
L H D +S V ++ ++S + G +++ T
Sbjct: 149 KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 184
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 82.0 bits (201), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 62/272 (22%), Positives = 131/272 (48%), Gaps = 16/272 (5%)
Query: 579 HKEAITAVAICGEGISVASVGRDAMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTML 638
H +A+++V G +AS D ++KI G+ E++ + +S + D+ ++
Sbjct: 27 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLV 86
Query: 639 VGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWS 698
D + I+DV G+ + L GH + + C ++ + ++SGS+D +VR+W+
Sbjct: 87 SASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD------ 140
Query: 699 HMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGELIIWSLENHLMTQQLSDDINAS 758
+K K L + + + + ++D + + + G IW + + L DD N
Sbjct: 141 -VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP 199
Query: 759 VNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCNKVF---EEKLLCL----SWAGEEKV 811
V+ V FS +G +L+ + L ++D + G C K + + + C+ S G + +
Sbjct: 200 VSFVKFSPNGKYILAATLDNTLKLWDYSKGK--CLKTYTGHKNEKYCIFANFSVTGGKWI 257
Query: 812 ILGGALGMVYLVDLIQVQLLKQVRAHKDAVLS 843
+ G +VY+ +L +++++++ H D V+S
Sbjct: 258 VSGSEDNLVYIWNLQTKEIVQKLQGHTDVVIS 289
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 57/273 (20%), Positives = 108/273 (39%), Gaps = 52/273 (19%)
Query: 660 LAGHEDAISCVAWDEKRKRLISGSWDCTVRVWN-----------------TGASWSH--- 699
LAGH A+S V + + L S S D +++W + +WS
Sbjct: 24 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 83
Query: 700 ---------------MKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGELIIWSLEN 744
+ K L + N + C + +N + G+ + IW ++
Sbjct: 84 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 143
Query: 745 HLMTQQL---SDDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCNKVFEEK-- 799
+ L SD ++A V F+ DG ++S + + ++D +G + + ++
Sbjct: 144 GKCLKTLPAHSDPVSA----VHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP 199
Query: 800 LLCLSWAGEEKVILGGAL-GMVYLVDLIQVQLLKQVRAHKDAVLSLHFDNCTMLVGCW-- 856
+ + ++ K IL L + L D + + LK HK+ + F N ++ G W
Sbjct: 200 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI-FANFSVTGGKWIV 258
Query: 857 ----DSCVVIYDVECGRIVTELAGHEDAISCVA 885
D+ V I++++ IV +L GH D + A
Sbjct: 259 SGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTA 291
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 33/156 (21%), Positives = 73/156 (46%), Gaps = 8/156 (5%)
Query: 758 SVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCNKVFEEKLLCLS---WAGEEKVILG 814
+V+ V FS +G + S + ++ ++ G K L +S W+ + +++
Sbjct: 30 AVSSVKFSPNGEWLASSSADKLIKIWGAYDGK--FEKTISGHKLGISDVAWSSDSNLLVS 87
Query: 815 GALGMVYLV-DLIQVQLLKQVRAHKDAVLSLHFDNCTMLV--GCWDSCVVIYDVECGRIV 871
+ + D+ + LK ++ H + V +F+ + L+ G +D V I+DV+ G+ +
Sbjct: 88 ASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCL 147
Query: 872 TELAGHEDAISCVAWDEKRKRLISGNLVGAPKLYAT 907
L H D +S V ++ ++S + G +++ T
Sbjct: 148 KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 183
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 82.0 bits (201), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 62/272 (22%), Positives = 131/272 (48%), Gaps = 16/272 (5%)
Query: 579 HKEAITAVAICGEGISVASVGRDAMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTML 638
H +A+++V G +AS D ++KI G+ E++ + +S + D+ ++
Sbjct: 25 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLV 84
Query: 639 VGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWS 698
D + I+DV G+ + L GH + + C ++ + ++SGS+D +VR+W+
Sbjct: 85 SASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD------ 138
Query: 699 HMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGELIIWSLENHLMTQQLSDDINAS 758
+K K L + + + + ++D + + + G IW + + L DD N
Sbjct: 139 -VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP 197
Query: 759 VNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCNKVF---EEKLLCL----SWAGEEKV 811
V+ V FS +G +L+ + L ++D + G C K + + + C+ S G + +
Sbjct: 198 VSFVKFSPNGKYILAATLDNTLKLWDYSKGK--CLKTYTGHKNEKYCIFANFSVTGGKWI 255
Query: 812 ILGGALGMVYLVDLIQVQLLKQVRAHKDAVLS 843
+ G +VY+ +L +++++++ H D V+S
Sbjct: 256 VSGSEDNLVYIWNLQTKEIVQKLQGHTDVVIS 287
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 57/273 (20%), Positives = 108/273 (39%), Gaps = 52/273 (19%)
Query: 660 LAGHEDAISCVAWDEKRKRLISGSWDCTVRVWN-----------------TGASWSH--- 699
LAGH A+S V + + L S S D +++W + +WS
Sbjct: 22 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 81
Query: 700 ---------------MKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGELIIWSLEN 744
+ K L + N + C + +N + G+ + IW ++
Sbjct: 82 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 141
Query: 745 HLMTQQL---SDDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCNKVFEEK-- 799
+ L SD ++A V F+ DG ++S + + ++D +G + + ++
Sbjct: 142 GKCLKTLPAHSDPVSA----VHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP 197
Query: 800 LLCLSWAGEEKVILGGAL-GMVYLVDLIQVQLLKQVRAHKDAVLSLHFDNCTMLVGCW-- 856
+ + ++ K IL L + L D + + LK HK+ + F N ++ G W
Sbjct: 198 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI-FANFSVTGGKWIV 256
Query: 857 ----DSCVVIYDVECGRIVTELAGHEDAISCVA 885
D+ V I++++ IV +L GH D + A
Sbjct: 257 SGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTA 289
Score = 39.7 bits (91), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 45/86 (52%), Gaps = 2/86 (2%)
Query: 824 DLIQVQLLKQVRAHKDAVLSLHFDNCTMLV--GCWDSCVVIYDVECGRIVTELAGHEDAI 881
D+ + LK ++ H + V +F+ + L+ G +D V I+DV+ G+ + L H D +
Sbjct: 96 DVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPV 155
Query: 882 SCVAWDEKRKRLISGNLVGAPKLYAT 907
S V ++ ++S + G +++ T
Sbjct: 156 SAVHFNRDGSLIVSSSYDGLCRIWDT 181
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 81.6 bits (200), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 62/272 (22%), Positives = 131/272 (48%), Gaps = 16/272 (5%)
Query: 579 HKEAITAVAICGEGISVASVGRDAMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTML 638
H +A+++V G +AS D ++KI G+ E++ + +S + D+ ++
Sbjct: 25 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLV 84
Query: 639 VGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWS 698
D + I+DV G+ + L GH + + C ++ + ++SGS+D +VR+W+
Sbjct: 85 SASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD------ 138
Query: 699 HMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGELIIWSLENHLMTQQLSDDINAS 758
+K K L + + + + ++D + + + G IW + + L DD N
Sbjct: 139 -VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP 197
Query: 759 VNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCNKVF---EEKLLCL----SWAGEEKV 811
V+ V FS +G +L+ + L ++D + G C K + + + C+ S G + +
Sbjct: 198 VSFVKFSPNGKYILAATLDNTLKLWDYSKGK--CLKTYTGHKNEKYCIFANFSVTGGKWI 255
Query: 812 ILGGALGMVYLVDLIQVQLLKQVRAHKDAVLS 843
+ G +VY+ +L +++++++ H D V+S
Sbjct: 256 VSGSEDNLVYIWNLQTKEIVQKLQGHTDVVIS 287
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 57/273 (20%), Positives = 108/273 (39%), Gaps = 52/273 (19%)
Query: 660 LAGHEDAISCVAWDEKRKRLISGSWDCTVRVWN-----------------TGASWSH--- 699
LAGH A+S V + + L S S D +++W + +WS
Sbjct: 22 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 81
Query: 700 ---------------MKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGELIIWSLEN 744
+ K L + N + C + +N + G+ + IW ++
Sbjct: 82 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 141
Query: 745 HLMTQQL---SDDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCNKVFEEK-- 799
+ L SD ++A V F+ DG ++S + + ++D +G + + ++
Sbjct: 142 GKCLKTLPAHSDPVSA----VHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP 197
Query: 800 LLCLSWAGEEKVILGGAL-GMVYLVDLIQVQLLKQVRAHKDAVLSLHFDNCTMLVGCW-- 856
+ + ++ K IL L + L D + + LK HK+ + F N ++ G W
Sbjct: 198 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI-FANFSVTGGKWIV 256
Query: 857 ----DSCVVIYDVECGRIVTELAGHEDAISCVA 885
D+ V I++++ IV +L GH D + A
Sbjct: 257 SGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTA 289
Score = 39.7 bits (91), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 45/86 (52%), Gaps = 2/86 (2%)
Query: 824 DLIQVQLLKQVRAHKDAVLSLHFDNCTMLV--GCWDSCVVIYDVECGRIVTELAGHEDAI 881
D+ + LK ++ H + V +F+ + L+ G +D V I+DV+ G+ + L H D +
Sbjct: 96 DVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPV 155
Query: 882 SCVAWDEKRKRLISGNLVGAPKLYAT 907
S V ++ ++S + G +++ T
Sbjct: 156 SAVHFNRDGSLIVSSSYDGLCRIWDT 181
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 80.9 bits (198), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 62/272 (22%), Positives = 130/272 (47%), Gaps = 16/272 (5%)
Query: 579 HKEAITAVAICGEGISVASVGRDAMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTML 638
H +A+++V G +AS D ++KI G+ E++ + +S + D+ ++
Sbjct: 25 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLV 84
Query: 639 VGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWS 698
D + I+DV G+ + L GH + + C ++ + ++SGS+D +VR+W+
Sbjct: 85 SASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD------ 138
Query: 699 HMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGELIIWSLENHLMTQQLSDDINAS 758
+K L + + + + ++D + + + G IW + + L DD N
Sbjct: 139 -VKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP 197
Query: 759 VNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCNKVF---EEKLLCL----SWAGEEKV 811
V+ V FS +G +L+ + L ++D + G C K + + + C+ S G + +
Sbjct: 198 VSFVKFSPNGKYILAATLDNTLKLWDYSKGK--CLKTYTGHKNEKYCIFANFSVTGGKWI 255
Query: 812 ILGGALGMVYLVDLIQVQLLKQVRAHKDAVLS 843
+ G MVY+ +L +++++++ H D V+S
Sbjct: 256 VSGSEDNMVYIWNLQTKEIVQKLQGHTDVVIS 287
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 57/273 (20%), Positives = 109/273 (39%), Gaps = 52/273 (19%)
Query: 660 LAGHEDAISCVAWDEKRKRLISGSWDCTVRVWN-----------------TGASWSH--- 699
LAGH A+S V + + L S S D +++W + +WS
Sbjct: 22 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 81
Query: 700 ---------------MKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGELIIWSLEN 744
+ K L + N + C + +N + G+ + IW ++
Sbjct: 82 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 141
Query: 745 HLMTQQL---SDDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCNKVFEEK-- 799
+ + L SD ++A V F+ DG ++S + + ++D +G + + ++
Sbjct: 142 GMCLKTLPAHSDPVSA----VHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP 197
Query: 800 LLCLSWAGEEKVILGGAL-GMVYLVDLIQVQLLKQVRAHKDAVLSLHFDNCTMLVGCW-- 856
+ + ++ K IL L + L D + + LK HK+ + F N ++ G W
Sbjct: 198 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI-FANFSVTGGKWIV 256
Query: 857 ----DSCVVIYDVECGRIVTELAGHEDAISCVA 885
D+ V I++++ IV +L GH D + A
Sbjct: 257 SGSEDNMVYIWNLQTKEIVQKLQGHTDVVISTA 289
Score = 38.5 bits (88), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 33/156 (21%), Positives = 72/156 (46%), Gaps = 8/156 (5%)
Query: 758 SVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCNKVFEEKLLCLS---WAGEEKVILG 814
+V+ V FS +G + S + ++ ++ G K L +S W+ + +++
Sbjct: 28 AVSSVKFSPNGEWLASSSADKLIKIWGAYDGK--FEKTISGHKLGISDVAWSSDSNLLVS 85
Query: 815 GALGMVYLV-DLIQVQLLKQVRAHKDAVLSLHFDNCTMLV--GCWDSCVVIYDVECGRIV 871
+ + D+ + LK ++ H + V +F+ + L+ G +D V I+DV+ G +
Sbjct: 86 ASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGMCL 145
Query: 872 TELAGHEDAISCVAWDEKRKRLISGNLVGAPKLYAT 907
L H D +S V ++ ++S + G +++ T
Sbjct: 146 KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 181
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 80.5 bits (197), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 61/272 (22%), Positives = 131/272 (48%), Gaps = 16/272 (5%)
Query: 579 HKEAITAVAICGEGISVASVGRDAMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTML 638
H +A+++V G +A+ D ++KI G+ E++ + +S + D+ ++
Sbjct: 25 HTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLV 84
Query: 639 VGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWS 698
D + I+DV G+ + L GH + + C ++ + ++SGS+D +VR+W+
Sbjct: 85 SASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD------ 138
Query: 699 HMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGELIIWSLENHLMTQQLSDDINAS 758
+K K L + + + + ++D + + + G IW + + L DD N
Sbjct: 139 -VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP 197
Query: 759 VNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCNKVF---EEKLLCL----SWAGEEKV 811
V+ V FS +G +L+ + L ++D + G C K + + + C+ S G + +
Sbjct: 198 VSFVKFSPNGKYILAATLDNTLKLWDYSKGK--CLKTYTGHKNEKYCIFANFSVTGGKWI 255
Query: 812 ILGGALGMVYLVDLIQVQLLKQVRAHKDAVLS 843
+ G +VY+ +L +++++++ H D V+S
Sbjct: 256 VSGSEDNLVYIWNLQTKEIVQKLQGHTDVVIS 287
Score = 39.7 bits (91), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 45/86 (52%), Gaps = 2/86 (2%)
Query: 824 DLIQVQLLKQVRAHKDAVLSLHFDNCTMLV--GCWDSCVVIYDVECGRIVTELAGHEDAI 881
D+ + LK ++ H + V +F+ + L+ G +D V I+DV+ G+ + L H D +
Sbjct: 96 DVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPV 155
Query: 882 SCVAWDEKRKRLISGNLVGAPKLYAT 907
S V ++ ++S + G +++ T
Sbjct: 156 SAVHFNRDGSLIVSSSYDGLCRIWDT 181
Score = 39.3 bits (90), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 56/273 (20%), Positives = 108/273 (39%), Gaps = 52/273 (19%)
Query: 660 LAGHEDAISCVAWDEKRKRLISGSWDCTVRVWN-----------------TGASWSH--- 699
LAGH A+S V + + L + S D +++W + +WS
Sbjct: 22 LAGHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 81
Query: 700 ---------------MKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGELIIWSLEN 744
+ K L + N + C + +N + G+ + IW ++
Sbjct: 82 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 141
Query: 745 HLMTQQL---SDDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCNKVFEEK-- 799
+ L SD ++A V F+ DG ++S + + ++D +G + + ++
Sbjct: 142 GKCLKTLPAHSDPVSA----VHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP 197
Query: 800 LLCLSWAGEEKVILGGAL-GMVYLVDLIQVQLLKQVRAHKDAVLSLHFDNCTMLVGCW-- 856
+ + ++ K IL L + L D + + LK HK+ + F N ++ G W
Sbjct: 198 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI-FANFSVTGGKWIV 256
Query: 857 ----DSCVVIYDVECGRIVTELAGHEDAISCVA 885
D+ V I++++ IV +L GH D + A
Sbjct: 257 SGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTA 289
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 80.1 bits (196), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 62/272 (22%), Positives = 130/272 (47%), Gaps = 16/272 (5%)
Query: 579 HKEAITAVAICGEGISVASVGRDAMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTML 638
H +A+++V G +AS D ++KI G+ E++ + +S + D+ ++
Sbjct: 25 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLV 84
Query: 639 VGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWS 698
D + I+DV G+ + L GH + + C ++ + ++SGS+D +VR+W+
Sbjct: 85 SASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD------ 138
Query: 699 HMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGELIIWSLENHLMTQQLSDDINAS 758
+K L + + + + ++D + + + G IW + + L DD N
Sbjct: 139 -VKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP 197
Query: 759 VNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCNKVF---EEKLLCL----SWAGEEKV 811
V+ V FS +G +L+ + L ++D + G C K + + + C+ S G + +
Sbjct: 198 VSFVKFSPNGKYILAATLDNDLKLWDYSKGK--CLKTYTGHKNEKYCIFANFSVTGGKWI 255
Query: 812 ILGGALGMVYLVDLIQVQLLKQVRAHKDAVLS 843
+ G MVY+ +L +++++++ H D V+S
Sbjct: 256 VSGSEDNMVYIWNLQTKEIVQKLQGHTDVVIS 287
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 57/273 (20%), Positives = 109/273 (39%), Gaps = 52/273 (19%)
Query: 660 LAGHEDAISCVAWDEKRKRLISGSWDCTVRVWN-----------------TGASWSH--- 699
LAGH A+S V + + L S S D +++W + +WS
Sbjct: 22 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 81
Query: 700 ---------------MKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGELIIWSLEN 744
+ K L + N + C + +N + G+ + IW ++
Sbjct: 82 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 141
Query: 745 HLMTQQL---SDDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCNKVFEEK-- 799
+ + L SD ++A V F+ DG ++S + + ++D +G + + ++
Sbjct: 142 GMCLKTLPAHSDPVSA----VHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP 197
Query: 800 LLCLSWAGEEKVILGGAL-GMVYLVDLIQVQLLKQVRAHKDAVLSLHFDNCTMLVGCW-- 856
+ + ++ K IL L + L D + + LK HK+ + F N ++ G W
Sbjct: 198 VSFVKFSPNGKYILAATLDNDLKLWDYSKGKCLKTYTGHKNEKYCI-FANFSVTGGKWIV 256
Query: 857 ----DSCVVIYDVECGRIVTELAGHEDAISCVA 885
D+ V I++++ IV +L GH D + A
Sbjct: 257 SGSEDNMVYIWNLQTKEIVQKLQGHTDVVISTA 289
Score = 38.5 bits (88), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 33/156 (21%), Positives = 72/156 (46%), Gaps = 8/156 (5%)
Query: 758 SVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCNKVFEEKLLCLS---WAGEEKVILG 814
+V+ V FS +G + S + ++ ++ G K L +S W+ + +++
Sbjct: 28 AVSSVKFSPNGEWLASSSADKLIKIWGAYDGK--FEKTISGHKLGISDVAWSSDSNLLVS 85
Query: 815 GALGMVYLV-DLIQVQLLKQVRAHKDAVLSLHFDNCTMLV--GCWDSCVVIYDVECGRIV 871
+ + D+ + LK ++ H + V +F+ + L+ G +D V I+DV+ G +
Sbjct: 86 ASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGMCL 145
Query: 872 TELAGHEDAISCVAWDEKRKRLISGNLVGAPKLYAT 907
L H D +S V ++ ++S + G +++ T
Sbjct: 146 KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 181
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 70.1 bits (170), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 67/278 (24%), Positives = 120/278 (43%), Gaps = 45/278 (16%)
Query: 617 SAVLSSMTLSSLCILPDNCTMLVGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKR 676
S+ S + + S+C PD + G D + I+D+E +IV L GHE I + +
Sbjct: 118 SSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSG 177
Query: 677 KRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAIS-KDNNQLAVGTEAG 735
+L+SGS D TVR+W+ + L +++ + +A+S D +A G+
Sbjct: 178 DKLVSGSGDRTVRIWDLRTGQCSL--------TLSIEDGVTTVAVSPGDGKYIAAGSLDR 229
Query: 736 ELIIWSLENHLMTQQLSDDINA------SVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGM 789
+ +W E + ++L + + SV V+F+ DG V+S + + +++L
Sbjct: 230 AVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNL---Q 286
Query: 790 QVCNKVFEEKLLCLSWAGEEKVILGGALGMVYLVDLIQVQLLKQVRAHKDAVLSLHF--D 847
NK + K G + Y+ HKD VLS+ +
Sbjct: 287 NANNK------------SDSKTPNSGTCEVTYI-------------GHKDFVLSVATTQN 321
Query: 848 NCTMLVGCWDSCVVIYDVECGRIVTELAGHEDAISCVA 885
+ +L G D V+ +D + G + L GH +++ VA
Sbjct: 322 DEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVA 359
Score = 37.4 bits (85), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 48/228 (21%), Positives = 92/228 (40%), Gaps = 29/228 (12%)
Query: 706 LVSQLDLDNRIKCLAISKDNNQLAVGTEAGELIIWSLENHLMTQQLSDDINAS------- 758
L LD + + C+ S D LA G ++ + + + +LSDD A+
Sbjct: 57 LHKSLDHTSVVCCVKFSNDGEYLATGCNK-TTQVYRVSDGSLVARLSDDSAANKDPENLN 115
Query: 759 ----------VNGVLFSEDGCRVLSCGNNCMLNVYDLTT-GMQVCNKVFEEKLLCLSW-A 806
+ V FS DG + + + ++ ++D+ + + + E+ + L +
Sbjct: 116 TSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFP 175
Query: 807 GEEKVILGGALGMVYLVDLI--QVQLLKQVRAHKDAVLSLHFDNCTMLVGCWDSCVVIYD 864
+K++ G V + DL Q L + V D + G D V ++D
Sbjct: 176 SGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWD 235
Query: 865 VECGRIVTEL-------AGHEDAISCVAWDEKRKRLISGNLVGAPKLY 905
E G +V L GH+D++ V + + ++SG+L + KL+
Sbjct: 236 SETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLW 283
Score = 35.8 bits (81), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 31/131 (23%), Positives = 56/131 (42%), Gaps = 18/131 (13%)
Query: 579 HKEAITAVAICGEGISVASVGRDAMLKIHSLKTGRQER-SAVLSSMTLS----------- 626
HK+++ +V +G SV S D +K+ +L+ + S +S T
Sbjct: 255 HKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVL 314
Query: 627 SLCILPDNCTMLVGCWDSCVVIYDVECGRIVTELAGHEDAISCVA------WDEKRKRLI 680
S+ ++ +L G D V+ +D + G + L GH +++ VA +
Sbjct: 315 SVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFA 374
Query: 681 SGSWDCTVRVW 691
+GS DC R+W
Sbjct: 375 TGSGDCKARIW 385
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 69.7 bits (169), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 71/346 (20%), Positives = 153/346 (44%), Gaps = 15/346 (4%)
Query: 573 LHFCHSHKEAITAVAICGEGISVASVGRDAMLKIHSLKTGRQERSAVLSSMTLSSLCILP 632
L H ++ VA +G ++AS D +K+ + + G+ ++ S +++ + P
Sbjct: 214 LQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVNGVAFRP 272
Query: 633 DNCTMLVGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWN 692
D T+ D V +++ G+++ L GH ++ VA+ + + S S D TV++WN
Sbjct: 273 DGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN 331
Query: 693 TGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGELIIWSLENHLMTQQLS 752
+ + L + + + +A S D +A ++ + +W+ L+ Q L+
Sbjct: 332 --------RNGQHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLL-QTLT 382
Query: 753 DDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCNKVFEEKLLCLSWAGEEKVI 812
++SV GV FS DG + S ++ + +++ + + ++++ +++ I
Sbjct: 383 GH-SSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDDQTI 441
Query: 813 LGGALGMVYLVDLIQVQLLKQVRAHKDAVLSLHF--DNCTMLVGCWDSCVVIYDVECGRI 870
+ + QLL+ + H +V + F D T+ D V +++ G++
Sbjct: 442 ASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQL 500
Query: 871 VTELAGHEDAISCVAWDEKRKRLISGNLVGAPKLYATEFYLLYVLT 916
+ L GH ++ VA+ + + S + KL+ LL LT
Sbjct: 501 LQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLT 546
Score = 66.6 bits (161), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 70/346 (20%), Positives = 151/346 (43%), Gaps = 15/346 (4%)
Query: 573 LHFCHSHKEAITAVAICGEGISVASVGRDAMLKIHSLKTGRQERSAVLSSMTLSSLCILP 632
L H ++ VA +G ++AS D +K+ + + G+ ++ S ++ + P
Sbjct: 91 LQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSP 149
Query: 633 DNCTMLVGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWN 692
D T+ D V +++ G+++ L GH ++ VA+ + + S S D TV++WN
Sbjct: 150 DGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN 208
Query: 693 TGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGELIIWSLENHLMTQQLS 752
+ + L + + ++ +A S D +A ++ + +W+ L+ Q L+
Sbjct: 209 --------RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLL-QTLT 259
Query: 753 DDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCNKVFEEKLLCLSWAGEEKVI 812
++SVNGV F DG + S ++ + +++ + + ++++ + + I
Sbjct: 260 GH-SSSVNGVAFRPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTI 318
Query: 813 LGGALGMVYLVDLIQVQLLKQVRAHKDAVLSLHF--DNCTMLVGCWDSCVVIYDVECGRI 870
+ + Q L+ + H +V + F D T+ D V +++ G++
Sbjct: 319 ASASDDKTVKLWNRNGQHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN-RNGQL 377
Query: 871 VTELAGHEDAISCVAWDEKRKRLISGNLVGAPKLYATEFYLLYVLT 916
+ L GH ++ VA+ + + S + KL+ LL LT
Sbjct: 378 LQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLT 423
Score = 63.9 bits (154), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 71/346 (20%), Positives = 152/346 (43%), Gaps = 15/346 (4%)
Query: 573 LHFCHSHKEAITAVAICGEGISVASVGRDAMLKIHSLKTGRQERSAVLSSMTLSSLCILP 632
L H ++ VA +G ++AS D +K+ + + G+ ++ S ++ + P
Sbjct: 173 LQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSP 231
Query: 633 DNCTMLVGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWN 692
D T+ D V +++ G+++ L GH +++ VA+ + + S S D TV++WN
Sbjct: 232 DGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWN 290
Query: 693 TGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGELIIWSLENHLMTQQLS 752
+ + L + + + +A S D +A ++ + +W+ N Q L+
Sbjct: 291 --------RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN-RNGQHLQTLT 341
Query: 753 DDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCNKVFEEKLLCLSWAGEEKVI 812
++SV GV FS DG + S ++ + +++ + + ++++ + + I
Sbjct: 342 GH-SSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTI 400
Query: 813 LGGALGMVYLVDLIQVQLLKQVRAHKDAVLSLHF--DNCTMLVGCWDSCVVIYDVECGRI 870
+ + QLL+ + H +V + F D+ T+ D V +++ G++
Sbjct: 401 ASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWN-RNGQL 459
Query: 871 VTELAGHEDAISCVAWDEKRKRLISGNLVGAPKLYATEFYLLYVLT 916
+ L GH ++ VA+ + + S + KL+ LL LT
Sbjct: 460 LQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLT 505
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 69/341 (20%), Positives = 150/341 (43%), Gaps = 15/341 (4%)
Query: 578 SHKEAITAVAICGEGISVASVGRDAMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTM 637
+H ++ VA +G ++AS D +K+ + + G+ ++ S ++ + PD T+
Sbjct: 14 AHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDGQTI 72
Query: 638 LVGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASW 697
D V +++ G+++ L GH ++ VA+ + + S S D TV++WN
Sbjct: 73 ASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN----- 126
Query: 698 SHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGELIIWSLENHLMTQQLSDDINA 757
+ + L + + + +A S D +A ++ + +W+ L+ Q L+ ++
Sbjct: 127 ---RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLL-QTLTGH-SS 181
Query: 758 SVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCNKVFEEKLLCLSWAGEEKVILGGAL 817
SV GV FS DG + S ++ + +++ + + ++++ + + I +
Sbjct: 182 SVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASD 241
Query: 818 GMVYLVDLIQVQLLKQVRAHKDAVLSLHF--DNCTMLVGCWDSCVVIYDVECGRIVTELA 875
+ QLL+ + H +V + F D T+ D V +++ G+++ L
Sbjct: 242 DKTVKLWNRNGQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWN-RNGQLLQTLT 300
Query: 876 GHEDAISCVAWDEKRKRLISGNLVGAPKLYATEFYLLYVLT 916
GH ++ VA+ + + S + KL+ L LT
Sbjct: 301 GHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQHLQTLT 341
Score = 46.2 bits (108), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 53/260 (20%), Positives = 111/260 (42%), Gaps = 13/260 (5%)
Query: 659 ELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKC 718
L H ++ VA+ + + S S D TV++WN + + L + + +
Sbjct: 11 RLEAHSSSVRGVAFSPDGQTIASASDDKTVKLWN--------RNGQLLQTLTGHSSSVWG 62
Query: 719 LAISKDNNQLAVGTEAGELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCGNNC 778
+A S D +A ++ + +W+ L+ Q L+ ++SV GV FS DG + S ++
Sbjct: 63 VAFSPDGQTIASASDDKTVKLWNRNGQLL-QTLTGH-SSSVRGVAFSPDGQTIASASDDK 120
Query: 779 MLNVYDLTTGMQVCNKVFEEKLLCLSWAGEEKVILGGALGMVYLVDLIQVQLLKQVRAHK 838
+ +++ + + ++++ + + I + + QLL+ + H
Sbjct: 121 TVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHS 180
Query: 839 DAVLSLHF--DNCTMLVGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISG 896
+V + F D T+ D V +++ G+++ L GH ++ VA+ + + S
Sbjct: 181 SSVWGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTIASA 239
Query: 897 NLVGAPKLYATEFYLLYVLT 916
+ KL+ LL LT
Sbjct: 240 SDDKTVKLWNRNGQLLQTLT 259
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 58/120 (48%), Gaps = 2/120 (1%)
Query: 573 LHFCHSHKEAITAVAICGEGISVASVGRDAMLKIHSLKTGRQERSAVLSSMTLSSLCILP 632
L H ++ VA +G ++AS D +K+ + + G+ ++ S ++ + P
Sbjct: 460 LQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSP 518
Query: 633 DNCTMLVGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWN 692
D T+ D V +++ G+++ L GH ++ VA+ + + S S D TV++WN
Sbjct: 519 DGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASSDKTVKLWN 577
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 66.6 bits (161), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 71/312 (22%), Positives = 137/312 (43%), Gaps = 74/312 (23%)
Query: 599 GRDAMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTMLVGCWDSCVVIYD---VECGR 655
GR ++ +IH R E S + C+ D+ ++ G D+ + I+D +EC R
Sbjct: 119 GRHSLQRIHC----RSETSKGV-------YCLQYDDQKIVSGLRDNTIKIWDKNTLECKR 167
Query: 656 IVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVW--NTGASWSHMKPSKSLVSQLDLD 713
I+T GH ++ C+ +DE+ +I+GS D TVRVW NTG + + V L +
Sbjct: 168 ILT---GHTGSVLCLQYDERV--IITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFN 222
Query: 714 NRIKCLAISKDNNQLAVGTEAGELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLS 773
N G ++ S + + ++ + ++ VL
Sbjct: 223 N--------------------GMMVTCSKDRSIAVWDMASPTDITLRRVLV--------- 253
Query: 774 CGNNCMLNVYDLTTGMQVCNKVFEEKLLCLSWAGEEKVILGGALGMVYLVDLIQVQLLKQ 833
G+ +NV D F++K + +S +G+ + + + + ++
Sbjct: 254 -GHRAAVNVVD-----------FDDKYI-VSASGDR---------TIKVWNTSTCEFVRT 291
Query: 834 VRAHKDAVLSLHFDNCTMLVGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRL 893
+ HK + L + + ++ G D+ + ++D+ECG + L GHE+ + C+ +D KR+
Sbjct: 292 LNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDN--KRI 349
Query: 894 ISGNLVGAPKLY 905
+SG G K++
Sbjct: 350 VSGAYDGKIKVW 361
Score = 57.4 bits (137), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 38/172 (22%), Positives = 81/172 (47%), Gaps = 6/172 (3%)
Query: 578 SHKEAITAVAICGEGISVASVGRDAMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTM 637
H+ A+ V + + S D +K+ + T R+ L+ C+ + +
Sbjct: 254 GHRAAVNVVDF--DDKYIVSASGDRTIKVWNTSTCEFVRT--LNGHKRGIACLQYRDRLV 309
Query: 638 LVGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASW 697
+ G D+ + ++D+ECG + L GHE+ + C+ +D KR++SG++D ++VW+ A+
Sbjct: 310 VSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDN--KRIVSGAYDGKIKVWDLVAAL 367
Query: 698 SHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGELIIWSLENHLMTQ 749
P+ +L + +++ + + D Q+ + ++IW N Q
Sbjct: 368 DPRAPAGTLCLRTLVEHSGRVFRLQFDEFQIVSSSHDDTILIWDFLNDPAAQ 419
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 64/317 (20%), Positives = 137/317 (43%), Gaps = 32/317 (10%)
Query: 561 SNSWCDKSILEPLHFCHSHKEAITAVAICGEGISVASVGRDAMLKIHSLKTGRQERSAVL 620
SN C + L+ +H C S + + + + + S RD +KI T +R +L
Sbjct: 114 SNWRCGRHSLQRIH-CRS-ETSKGVYCLQYDDQKIVSGLRDNTIKIWDKNTLECKR--IL 169
Query: 621 SSMTLSSLCILPDNCTMLVGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLI 680
+ T S LC+ D ++ G DS V ++DV G ++ L H +A+ + ++ ++
Sbjct: 170 TGHTGSVLCLQYDERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNN--GMMV 227
Query: 681 SGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGELIIW 740
+ S D ++ VW+ + P+ + ++ + +R + D+ + + + +W
Sbjct: 228 TCSKDRSIAVWDMAS------PTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVW 281
Query: 741 SLENHLMTQQLSDDINASVNGVLFSEDGCR-VLSCGNNCMLNVYDLTTGMQVCNKVF--- 796
+ T + +N G+ + R V+S ++ + ++D+ G C +V
Sbjct: 282 NTS----TCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECG--ACLRVLEGH 335
Query: 797 EEKLLCLSWAGEEKVILGGALGMVYLVDLIQV---------QLLKQVRAHKDAVLSLHFD 847
EE + C+ + ++++ G G + + DL+ L+ + H V L FD
Sbjct: 336 EELVRCIRF-DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFD 394
Query: 848 NCTMLVGCWDSCVVIYD 864
++ D ++I+D
Sbjct: 395 EFQIVSSSHDDTILIWD 411
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 56.6 bits (135), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 73/263 (27%), Positives = 115/263 (43%), Gaps = 49/263 (18%)
Query: 660 LAGHED-AISCVAWDEKRKRLISGSWDCTVRVW-------------NTGASWSHMKPSKS 705
L GH+D I+C+ + R ++SGS D T++VW +TG WS
Sbjct: 114 LKGHDDHVITCLQFCGNR--IVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWS------- 164
Query: 706 LVSQLDLDNRIKCLAISKDNNQLAVGTEAGELIIWSLENHLMTQQLSDDINASVNGVLFS 765
SQ+ DN I ++ S D E GE I +L H ++V +
Sbjct: 165 --SQMR-DNII--ISGSTDRTLKVWNAETGECIH-TLYGH----------TSTVRCMHLH 208
Query: 766 EDGCRVLSCGNNCMLNVYDLTTGMQVCNKVFE---EKLLCLSWAGEEKVILGGALGMVYL 822
E RV+S + L V+D+ TG C V + C+ + G +V+ G MV +
Sbjct: 209 EK--RVVSGSRDATLRVWDIETGQ--CLHVLMGHVAAVRCVQYDGR-RVVSGAYDFMVKV 263
Query: 823 VDLIQVQLLKQVRAHKDAVLSLHFDNCTMLVGCWDSCVVIYDVECGRIVTELAGHEDAIS 882
D L ++ H + V SL FD ++ G D+ + ++DVE G + L GH+ S
Sbjct: 264 WDPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTS 323
Query: 883 CVAWDEKRKRLISGNLVGAPKLY 905
+ + K L+SGN K++
Sbjct: 324 GM--ELKDNILVSGNADSTVKIW 344
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 61/294 (20%), Positives = 115/294 (39%), Gaps = 65/294 (22%)
Query: 595 VASVGRDAMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTMLVGCWDSCVVIYDVECG 654
+ S D LK+ + +TG E L T + C+ ++ G D+ + ++D+E G
Sbjct: 172 IISGSTDRTLKVWNAETG--ECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETG 229
Query: 655 RIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDN 714
+ + L GH A+ CV +D +R++SG++D V+VW+ + L + N
Sbjct: 230 QCLHVLMGHVAAVRCVQYDG--RRVVSGAYDFMVKVWDP-------ETETCLHTLQGHTN 280
Query: 715 RIKCLAISKDNNQLAVGTEAGELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSC 774
R+ L D + G+ + +W +E
Sbjct: 281 RVYSLQF--DGIHVVSGSLDTSIRVWDVET------------------------------ 308
Query: 775 GNNCMLNV---YDLTTGMQVCNKVFEEKLLCLSWAGEEKVILGGALGMVYLVDLIQVQLL 831
NC+ + LT+GM++ + + + G A V + D+ Q L
Sbjct: 309 -GNCIHTLTGHQSLTSGMELKDNIL---------------VSGNADSTVKIWDIKTGQCL 352
Query: 832 KQVRA---HKDAVLSLHFDNCTMLVGCWDSCVVIYDVECGRIVTELAGHEDAIS 882
+ ++ H+ AV L F+ ++ D V ++D++ G + L E S
Sbjct: 353 QTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGS 406
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 54.3 bits (129), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 49/228 (21%), Positives = 95/228 (41%), Gaps = 22/228 (9%)
Query: 572 PLHFCHSHKEAITAVAICGEGISVASVGRDAMLKIHSLKTGRQERSAVLSSMTLSSLCIL 631
P H ++ +A+ E S D L++ L+TG + V + S+
Sbjct: 68 PHKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFS 127
Query: 632 PDNCTMLVGCWDSCVVIYDV--ECGRIVTELAGHEDAISCVAWDEKRKR----------L 679
PDN +L + + ++++ EC E H D +SCV + K
Sbjct: 128 PDNRQILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYF 187
Query: 680 ISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGELII 739
S WD ++VWNT + + ++ + L+IS + +A G + +L+I
Sbjct: 188 ASVGWDGRLKVWNTNFQIRYTFKAH--------ESNVNHLSISPNGKYIATGGKDKKLLI 239
Query: 740 WSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTT 787
W + N L Q D +++N + F+ + ++ G + + +++L T
Sbjct: 240 WDILN-LTYPQREFDAGSTINQIAFNPK-LQWVAVGTDQGVKIFNLMT 285
Score = 35.4 bits (80), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 15/64 (23%), Positives = 30/64 (46%)
Query: 842 LSLHFDNCTMLVGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGNLVGA 901
L+L +NC + WD + ++D+ G GH+ + VA+ ++++S
Sbjct: 82 LALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAERE 141
Query: 902 PKLY 905
KL+
Sbjct: 142 IKLW 145
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 54.3 bits (129), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 54/255 (21%), Positives = 102/255 (40%), Gaps = 29/255 (11%)
Query: 643 DSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKP 702
D + ++ E G + E+ HED + C A+ + + + S D V++WN+
Sbjct: 642 DKTLQVFKAETGEKLLEIKAHEDEVLCCAFSTDDRFIATCSVDKKVKIWNS--------M 693
Query: 703 SKSLVSQLD-LDNRIKCLAISKDNNQLAVGTEAGE--LIIWSLENHLMTQQLSDDINASV 759
+ LV D ++ C + ++ L + T + + L +W L + N SV
Sbjct: 694 TGELVHTYDEHSEQVNCCHFTNSSHHLLLATGSSDCFLKLWDLNQKECRNTMFGHTN-SV 752
Query: 760 NGVLFSEDGCRVLSCGNNCMLNVYDLTTG--------------MQVCNKVFEEKLLCLSW 805
N FS D + SC + L ++D T+ ++ + E + C SW
Sbjct: 753 NHCRFSPDDKLLASCSADGTLKLWDATSANERKSINVKQFFLNLEDPQEDMEVIVKCCSW 812
Query: 806 AGEEKVILGGALGMVYLVDLIQVQLLKQVR-AHKDAVLSLHF--DNCTMLVGCWDSCVVI 862
+ + I+ A ++L D+ LL ++ H + F N +V CV +
Sbjct: 813 SADGARIMVAAKNKIFLFDIHTSGLLGEIHTGHHSTIQYCDFSPQNHLAVVALSQYCVEL 872
Query: 863 YDVECGRIVTELAGH 877
++ + V + GH
Sbjct: 873 WNTDSRSKVADCRGH 887
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 37/154 (24%), Positives = 74/154 (48%), Gaps = 6/154 (3%)
Query: 758 SVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCN-KVFEEKLLCLSWAGEEKVILGGA 816
+V FSEDG R+ SCG + L V+ TG ++ K E+++LC +++ +++ I +
Sbjct: 623 AVYHACFSEDGQRIASCGADKTLQVFKAETGEKLLEIKAHEDEVLCCAFSTDDRFIATCS 682
Query: 817 LG-MVYLVDLIQVQLLKQVRAHKDAVLSLHFDNCT----MLVGCWDSCVVIYDVECGRIV 871
+ V + + + +L+ H + V HF N + + G D + ++D+
Sbjct: 683 VDKKVKIWNSMTGELVHTYDEHSEQVNCCHFTNSSHHLLLATGSSDCFLKLWDLNQKECR 742
Query: 872 TELAGHEDAISCVAWDEKRKRLISGNLVGAPKLY 905
+ GH ++++ + K L S + G KL+
Sbjct: 743 NTMFGHTNSVNHCRFSPDDKLLASCSADGTLKLW 776
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 67/153 (43%), Gaps = 16/153 (10%)
Query: 631 LPDNCTMLVGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRV 690
L N +L +D V ++++ G + H+ + + S S D T ++
Sbjct: 1058 LLKNSRLLSWSFDGTVKVWNIITGNKEKDFVCHQGTVLSCDISHDATKFSSTSADKTAKI 1117
Query: 691 WNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGELIIWSLEN----HL 746
W S+ + P L + ++C A S D+ LA G + GE+ IW++ N HL
Sbjct: 1118 W----SFDLLLPLHELRGH---NGCVRCSAFSVDSTLLATGDDNGEIRIWNVSNGELLHL 1170
Query: 747 MTQQLSDDINASVNG----VLFSEDGCRVLSCG 775
LS++ A+ G + FS DG ++S G
Sbjct: 1171 CA-PLSEEGAATHGGWVTDLCFSPDGKMLISAG 1202
Score = 34.7 bits (78), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 39/92 (42%)
Query: 601 DAMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTMLVGCWDSCVVIYDVECGRIVTEL 660
D +K+ ++ TG +E+ V T+ S I D D I+ + + EL
Sbjct: 1070 DGTVKVWNIITGNKEKDFVCHQGTVLSCDISHDATKFSSTSADKTAKIWSFDLLLPLHEL 1129
Query: 661 AGHEDAISCVAWDEKRKRLISGSWDCTVRVWN 692
GH + C A+ L +G + +R+WN
Sbjct: 1130 RGHNGCVRCSAFSVDSTLLATGDDNGEIRIWN 1161
Score = 31.2 bits (69), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 65/348 (18%), Positives = 126/348 (36%), Gaps = 35/348 (10%)
Query: 590 GEGISVASVGRDAMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTMLVGCWDSCVVIY 649
G I VA+ + + IH+ +G T+ P N +V CV ++
Sbjct: 816 GARIMVAAKNKIFLFDIHT--SGLLGEIHTGHHSTIQYCDFSPQNHLAVVALSQYCVELW 873
Query: 650 DVECGRIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGA----SWSHMKPSKS 705
+ + V + GH + V + ++ S D T+R+W T S +K
Sbjct: 874 NTDSRSKVADCRGHLSWVHGVMFSPDGSSFLTSSDDQTIRLWETKKVCKNSAVMLKQEVD 933
Query: 706 LVSQ------LDLDN--------------------RIKCLAISKDNNQLAVGTEAGELII 739
+V Q L +D+ ++ C +S +A G E G + I
Sbjct: 934 VVFQENEVMVLAVDHIRRLQLINGRTGQIDYLTEAQVSCCCLSPHLQYIAFGDENGAIEI 993
Query: 740 WSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCNKVFEEK 799
L N+ + Q +V + F+ D ++S ++ + V++ + + +E
Sbjct: 994 LELVNNRIFQSRFQH-KKTVWHIQFTADEKTLISSSDDAEIQVWNWQLDKCIFLRGHQET 1052
Query: 800 LLCLSWAGEEKVILGGALGMVYLVDLIQVQLLKQVRAHKDAVLS--LHFDNCTMLVGCWD 857
+ +++ G V + ++I K H+ VLS + D D
Sbjct: 1053 VKDFRLLKNSRLLSWSFDGTVKVWNIITGNKEKDFVCHQGTVLSCDISHDATKFSSTSAD 1112
Query: 858 SCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGNLVGAPKLY 905
I+ + + EL GH + C A+ L +G+ G +++
Sbjct: 1113 KTAKIWSFDLLLPLHELRGHNGCVRCSAFSVDSTLLATGDDNGEIRIW 1160
>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1
pdb|1GXR|B Chain B, Wd40 Region Of Human Groucho/tle1
pdb|2CE8|A Chain A, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|B Chain B, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|C Chain C, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|D Chain D, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|A Chain A, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|B Chain B, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|C Chain C, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|D Chain D, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain
Length = 337
Score = 53.5 bits (127), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 68/302 (22%), Positives = 124/302 (41%), Gaps = 18/302 (5%)
Query: 517 RHALEVQIMEFGQIPKQIFHSPHPRRTLTSQSSLLKHSTILSDVSNSWCDKSILEPLHFC 576
RHA ++ + G++ + S R T +K + D+S+ +KS + L C
Sbjct: 40 RHARQINTLNHGEVVCAVTISNPTRHVYTGGKGCVK----VWDISHPG-NKSPVSQLD-C 93
Query: 577 HSHKEAITAVAICGEGISVASVGRDAMLKIHSLKTGRQERSAVLSSMTLS--SLCILPDN 634
+ I + + +G ++ G + L I L A L+S + +L I PD+
Sbjct: 94 LNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDS 153
Query: 635 CTMLVGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTG 694
C D + ++D+ +V + GH D SC+ +L +G D TVR W+
Sbjct: 154 KVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWD-- 211
Query: 695 ASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGELIIWSLENHLMTQQLSDD 754
++ + L Q D ++I L LAVG E+ + + + N QL
Sbjct: 212 -----LREGRQL-QQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHV-NKPDKYQLHLH 264
Query: 755 INASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCNKVFEEKLLCLSWAGEEKVILG 814
+ V + F+ G +S G + +LN + G + +L + ++K I+
Sbjct: 265 -ESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISVDDKYIVT 323
Query: 815 GA 816
G+
Sbjct: 324 GS 325
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 53.5 bits (127), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 57/269 (21%), Positives = 110/269 (40%), Gaps = 19/269 (7%)
Query: 610 KTGRQERSAVLSSMTLSSLCILPDNCTMLVGCWDSCVVIYDVECGRIVTELAGHEDAISC 669
K G RS S + + D L WD + ++DV G GH+ +
Sbjct: 53 KFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVXS 112
Query: 670 VAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLA 729
V D+K +ISGS D T++VW + +L+ D ++++ + K ++
Sbjct: 113 VDIDKKASXIISGSRDKTIKVWTIKG-----QCLATLLGHNDWVSQVRVVPNEKADDDSV 167
Query: 730 VGTEAGE---LIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLT 786
AG + W+L N + N+++N + S DG + S G + + +++L
Sbjct: 168 TIISAGNDKXVKAWNL-NQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIXLWNLA 226
Query: 787 TGMQVCNKVFEEKLLCLSW--------AGEEKVILGGALGMVYLVDLIQVQLLKQVRAHK 838
++++ L++ A I +L YLVD ++ + +A +
Sbjct: 227 AKKAXYTLSAQDEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAE 286
Query: 839 DAVLSLHF--DNCTMLVGCWDSCVVIYDV 865
+SL + D T+ G D+ + ++ V
Sbjct: 287 PHAVSLAWSADGQTLFAGYTDNVIRVWQV 315
Score = 35.0 bits (79), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 25/55 (45%)
Query: 843 SLHFDNCTMLVGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGN 897
+L D L WD + ++DV G GH+ + V D+K +ISG+
Sbjct: 72 TLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVXSVDIDKKASXIISGS 126
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 53.1 bits (126), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 66/309 (21%), Positives = 130/309 (42%), Gaps = 31/309 (10%)
Query: 579 HKEAITAVAI-CGEGISVASVGRDAMLKIHSL-----KTGRQERSAVLSSMTLSSLCILP 632
H +T++A G+ + S RD L L K G RS S + +
Sbjct: 10 HNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTA 69
Query: 633 DNCTMLVGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWN 692
D L WD + ++DV G GH+ + V D+K +ISGS D T++VW
Sbjct: 70 DGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWT 129
Query: 693 TGASWSHMKPSKSLVSQLDLDNRIKCLAISK-DNNQLAVGTEAGELII--WSLENHLMTQ 749
+ +L+ D ++++ + K D++ + + + + ++ W+L
Sbjct: 130 IKG-----QCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQF---- 180
Query: 750 QLSDDI---NASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCNKVFEEKLLCLSW- 805
Q+ D N+++N + S DG + S G + + +++L + ++++ L++
Sbjct: 181 QIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFS 240
Query: 806 -------AGEEKVILGGALGMVYLVDLIQVQLLKQVRAHKDAVLSLHF--DNCTMLVGCW 856
A I +L YLVD ++ + +A + +SL + D T+ G
Sbjct: 241 PNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYT 300
Query: 857 DSCVVIYDV 865
D+ + ++ V
Sbjct: 301 DNVIRVWQV 309
Score = 34.3 bits (77), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 25/55 (45%)
Query: 843 SLHFDNCTMLVGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGN 897
+L D L WD + ++DV G GH+ + V D+K +ISG+
Sbjct: 66 TLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGS 120
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 52.8 bits (125), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 46/183 (25%), Positives = 79/183 (43%), Gaps = 11/183 (6%)
Query: 612 GRQERSAVLSSMTLSSLCILPDNCTMLVGCWDSCVVIYDVECGRIVTELAGHEDAISCVA 671
G +R+ S +S + I D L G WD + ++D+ G GH + VA
Sbjct: 53 GIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVA 112
Query: 672 WDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKD-NNQLAV 730
+ ++++SGS D T+++WNT + K V + C+ S + +N + V
Sbjct: 113 FSSDNRQIVSGSRDKTIKLWNT------LGVCKYTVQDESHSEWVSCVRFSPNSSNPIIV 166
Query: 731 GTEAGELI-IWSLEN-HLMTQQLSDDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTG 788
+L+ +W+L N L T + +N V S DG S G + ++DL G
Sbjct: 167 SCGWDKLVKVWNLANCKLKTNHIGH--TGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEG 224
Query: 789 MQV 791
+
Sbjct: 225 KHL 227
Score = 34.3 bits (77), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 36/80 (45%), Gaps = 6/80 (7%)
Query: 832 KQVRAHK----DAVLSLHFDNCTMLVGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWD 887
+ +R H D V+S D L G WD + ++D+ G GH + VA+
Sbjct: 57 RALRGHSHFVSDVVIS--SDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFS 114
Query: 888 EKRKRLISGNLVGAPKLYAT 907
++++SG+ KL+ T
Sbjct: 115 SDNRQIVSGSRDKTIKLWNT 134
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 52.8 bits (125), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 46/180 (25%), Positives = 78/180 (43%), Gaps = 11/180 (6%)
Query: 612 GRQERSAVLSSMTLSSLCILPDNCTMLVGCWDSCVVIYDVECGRIVTELAGHEDAISCVA 671
G +R+ S +S + I D L G WD + ++D+ G GH + VA
Sbjct: 76 GIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVA 135
Query: 672 WDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKD-NNQLAV 730
+ ++++SGS D T+++WNT + K V + C+ S + +N + V
Sbjct: 136 FSSDNRQIVSGSRDKTIKLWNT------LGVCKYTVQDESHSEWVSCVRFSPNSSNPIIV 189
Query: 731 GTEAGELI-IWSLEN-HLMTQQLSDDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTG 788
+L+ +W+L N L T + +N V S DG S G + ++DL G
Sbjct: 190 SCGWDKLVKVWNLANCKLKTNHIGH--TGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEG 247
Score = 34.3 bits (77), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 36/80 (45%), Gaps = 6/80 (7%)
Query: 832 KQVRAHK----DAVLSLHFDNCTMLVGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWD 887
+ +R H D V+S D L G WD + ++D+ G GH + VA+
Sbjct: 80 RALRGHSHFVSDVVIS--SDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFS 137
Query: 888 EKRKRLISGNLVGAPKLYAT 907
++++SG+ KL+ T
Sbjct: 138 SDNRQIVSGSRDKTIKLWNT 157
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 57/272 (20%), Positives = 116/272 (42%), Gaps = 25/272 (9%)
Query: 610 KTGRQERSAVLSSMTLSSLCILPDNCTMLVGCWDSCVVIYDVECGRIVTELAGHEDAISC 669
K G RS S + + D L WD + ++DV G GH+ +
Sbjct: 53 KFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMS 112
Query: 670 VAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISK-DNNQL 728
V D+K +ISGS D T++VW + +L+ D ++++ + K D++ +
Sbjct: 113 VDIDKKASMIISGSRDKTIKVWTIKG-----QCLATLLGHNDWVSQVRVVPNEKADDDSV 167
Query: 729 AVGTEAGELII--WSLENHLMTQQLSDDI---NASVNGVLFSEDGCRVLSCGNNCMLNVY 783
+ + + ++ W+L Q+ D N+++N + S DG + S G + + ++
Sbjct: 168 TIISAGNDKMVKAWNLNQF----QIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLW 223
Query: 784 DLTTGMQVCNKVFEEKLLCLSW--------AGEEKVILGGALGMVYLVDLIQVQLLKQVR 835
+L + ++++ L++ A I +L YLVD ++ + +
Sbjct: 224 NLAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSK 283
Query: 836 AHKDAVLSLHF--DNCTMLVGCWDSCVVIYDV 865
A + +SL + D T+ G D+ + ++ V
Sbjct: 284 AAEPHAVSLAWSADGQTLFAGYTDNVIRVWQV 315
Score = 34.3 bits (77), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 25/55 (45%)
Query: 843 SLHFDNCTMLVGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGN 897
+L D L WD + ++DV G GH+ + V D+K +ISG+
Sbjct: 72 TLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGS 126
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 57/272 (20%), Positives = 116/272 (42%), Gaps = 25/272 (9%)
Query: 610 KTGRQERSAVLSSMTLSSLCILPDNCTMLVGCWDSCVVIYDVECGRIVTELAGHEDAISC 669
K G RS S + + D L WD + ++DV G GH+ +
Sbjct: 53 KFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMS 112
Query: 670 VAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISK-DNNQL 728
V D+K +ISGS D T++VW + +L+ D ++++ + K D++ +
Sbjct: 113 VDIDKKASMIISGSRDKTIKVWTIKG-----QCLATLLGHNDWVSQVRVVPNEKADDDSV 167
Query: 729 AVGTEAGELII--WSLENHLMTQQLSDDI---NASVNGVLFSEDGCRVLSCGNNCMLNVY 783
+ + + ++ W+L Q+ D N+++N + S DG + S G + + ++
Sbjct: 168 TIISAGNDKMVKAWNLNQF----QIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLW 223
Query: 784 DLTTGMQVCNKVFEEKLLCLSW--------AGEEKVILGGALGMVYLVDLIQVQLLKQVR 835
+L + ++++ L++ A I +L YLVD ++ + +
Sbjct: 224 NLAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSK 283
Query: 836 AHKDAVLSLHF--DNCTMLVGCWDSCVVIYDV 865
A + +SL + D T+ G D+ + ++ V
Sbjct: 284 AAEPHAVSLAWSADGQTLFAGYTDNVIRVWQV 315
Score = 34.3 bits (77), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 25/55 (45%)
Query: 843 SLHFDNCTMLVGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGN 897
+L D L WD + ++DV G GH+ + V D+K +ISG+
Sbjct: 72 TLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGS 126
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 49/225 (21%), Positives = 98/225 (43%), Gaps = 17/225 (7%)
Query: 577 HSHKEAITAVAICGEGISV-ASVGRDAMLKIHSLKT-----GRQERSAVLSSMTLSSLCI 630
+H + +TA+A + + S RD + + L G +R S + + +
Sbjct: 379 RAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVL 438
Query: 631 LPDNCTMLVGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRV 690
D L G WD + ++D+ G GH + VA+ ++++S S D T+++
Sbjct: 439 SSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKL 498
Query: 691 WNTGASWSHMKPSKSLVSQLDLDNR--IKCLAISKDNNQLAVGTEAGE--LIIWSLENHL 746
WNT + K +S+ +R + C+ S + Q + + + + + +W+L N
Sbjct: 499 WNT------LGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCK 552
Query: 747 MTQQLSDDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQV 791
+ L+ V+ V S DG S G + ++ ++DL G ++
Sbjct: 553 LRSTLAGH-TGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKL 596
Score = 38.5 bits (88), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 41/160 (25%), Positives = 63/160 (39%), Gaps = 27/160 (16%)
Query: 560 VSNSWCDKSILEPLHFCH------SHKEAITAVAICGEGISVASVGRDAMLKIHSLKTGR 613
VS SW + L C H ++ VA+ +G AS G+D ++ + L G+
Sbjct: 535 VSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGK 594
Query: 614 QERSAVLSSMTLSSLCILPDNCTMLVGCWDSCVVIYDVECGRIVTEL------------- 660
+ S +S+ + +LC P N L + + I+D+E IV +L
Sbjct: 595 KLYSLEANSV-IHALCFSP-NRYWLCAATEHGIKIWDLESKSIVEDLKVDLKAEAEKADN 652
Query: 661 ----AGHEDAISCVA--WDEKRKRLISGSWDCTVRVWNTG 694
A I C + W L SG D +RVW G
Sbjct: 653 SGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGIG 692
Score = 34.7 bits (78), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 38/184 (20%), Positives = 81/184 (44%), Gaps = 14/184 (7%)
Query: 716 IKCLAISKDNNQLAV-GTEAGELIIWSL----ENHLMTQQLSDDINASVNGVLFSEDGCR 770
+ +A DN + V + +I+W L + + + Q+ + V V+ S DG
Sbjct: 385 VTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQF 444
Query: 771 VLSCGNNCMLNVYDLTTGMQVCNKVFEEK-LLCLSWAGEEKVILGGA----LGMVYLVDL 825
LS + L ++DL G+ V K +L ++++ + + I+ + + + +
Sbjct: 445 ALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGE 504
Query: 826 IQVQLLKQVRAHKDAVLSLHFD----NCTMLVGCWDSCVVIYDVECGRIVTELAGHEDAI 881
+ + + H+D V + F T++ WD V ++++ ++ + LAGH +
Sbjct: 505 CKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYV 564
Query: 882 SCVA 885
S VA
Sbjct: 565 STVA 568
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 65/307 (21%), Positives = 129/307 (42%), Gaps = 31/307 (10%)
Query: 579 HKEAITAVAI-CGEGISVASVGRDAMLKIHSL-----KTGRQERSAVLSSMTLSSLCILP 632
H +T++A G+ + S RD L L K G RS S + +
Sbjct: 16 HNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTA 75
Query: 633 DNCTMLVGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWN 692
D L WD + ++DV G GH+ + V D+K +ISGS D T++VW
Sbjct: 76 DGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWT 135
Query: 693 TGASWSHMKPSKSLVSQLDLDNRIKCLAISK-DNNQLAVGTEAGELII--WSLENHLMTQ 749
+ +L+ D ++++ + K D++ + + + + ++ W+L
Sbjct: 136 IKG-----QCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQF---- 186
Query: 750 QLSDDI---NASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCNKVFEEKLLCLSW- 805
Q+ D N+++N + S DG + S G + + +++L + ++++ L++
Sbjct: 187 QIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFS 246
Query: 806 -------AGEEKVILGGALGMVYLVDLIQVQLLKQVRAHKDAVLSLHF--DNCTMLVGCW 856
A I +L YLVD ++ + +A + +SL + D T+ G
Sbjct: 247 PNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYT 306
Query: 857 DSCVVIY 863
D+ + ++
Sbjct: 307 DNVIRVW 313
Score = 34.3 bits (77), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 25/55 (45%)
Query: 843 SLHFDNCTMLVGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGN 897
+L D L WD + ++DV G GH+ + V D+K +ISG+
Sbjct: 72 TLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGS 126
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/184 (22%), Positives = 79/184 (42%), Gaps = 18/184 (9%)
Query: 618 AVLSSMTLSSLCILPDNCTMLVGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRK 677
VL S + ++ G +D+ ++++DV + + L+GH D I +D +RK
Sbjct: 264 GVLRGHXASVRTVSGHGNIVVSGSYDNTLIVWDVAQXKCLYILSGHTDRIYSTIYDHERK 323
Query: 678 RLISGSWDCTVRVWN--TGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAG 735
R IS S D T+R+W+ G ++ +LV L L ++ L G
Sbjct: 324 RCISASXDTTIRIWDLENGELXYTLQGHTALVGLLRLSDKF-----------LVSAAADG 372
Query: 736 ELIIWSLENHLMTQQLS-DDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCNK 794
+ W ++ +++ S N S + D +L G+ N+Y+L +G V
Sbjct: 373 SIRGWDANDY--SRKFSYHHTNLSAITTFYVSD--NILVSGSENQFNIYNLRSGKLVHAN 428
Query: 795 VFEE 798
+ ++
Sbjct: 429 ILKD 432
Score = 39.7 bits (91), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 40/75 (53%)
Query: 834 VRAHKDAVLSLHFDNCTMLVGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRL 893
+R H +V ++ ++ G +D+ ++++DV + + L+GH D I +D +RKR
Sbjct: 266 LRGHXASVRTVSGHGNIVVSGSYDNTLIVWDVAQXKCLYILSGHTDRIYSTIYDHERKRC 325
Query: 894 ISGNLVGAPKLYATE 908
IS + +++ E
Sbjct: 326 ISASXDTTIRIWDLE 340
Score = 37.0 bits (84), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 55/281 (19%), Positives = 107/281 (38%), Gaps = 36/281 (12%)
Query: 615 ERSAVLSSMTLSSLCILPDNCTMLVGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDE 674
+R+ + T C+ ++ ++ G D + +YD + + +L+GH+ + + +
Sbjct: 113 QRTTLRGHXTSVITCLQFEDNYVITGADDKXIRVYDSINKKFLLQLSGHDGGVWALKYAH 172
Query: 675 KRKRLISGSWDCTVRVWNTGAS-WSHMKPSKSLVSQLDLDNRIKCLAISKDNN--QLAVG 731
L+SGS D TVRVW+ +H+ ++ ++CL I + N + G
Sbjct: 173 G-GILVSGSTDRTVRVWDIKKGCCTHVFEGH--------NSTVRCLDIVEYKNIKYIVTG 223
Query: 732 TEAGELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQV 791
+ L +W L +SV D V V L
Sbjct: 224 SRDNTLHVWKLPKE-----------SSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHXAS 272
Query: 792 CNKVFEEKLLCLSWAGEEKVILGGALGMVYLV-DLIQVQLLKQVRAHKDAVLSLHFDNCT 850
V +G +++ G+ +V D+ Q + L + H D + S +D+
Sbjct: 273 VRTV----------SGHGNIVVSGSYDNTLIVWDVAQXKCLYILSGHTDRIYSTIYDHER 322
Query: 851 M--LVGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEK 889
+ D+ + I+D+E G + L GH + + +K
Sbjct: 323 KRCISASXDTTIRIWDLENGELXYTLQGHTALVGLLRLSDK 363
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/165 (23%), Positives = 75/165 (45%), Gaps = 18/165 (10%)
Query: 637 MLVGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWN--TG 694
++ G +D+ ++++DV + + L+GH D I +D +RKR IS S D T+R+W+ G
Sbjct: 283 VVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENG 342
Query: 695 ASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGELIIWSLENHLMTQQLS-D 753
++ +LV L L ++ L G + W ++ +++ S
Sbjct: 343 ELMYTLQGHTALVGLLRLSDKF-----------LVSAAADGSIRGWDANDY--SRKFSYH 389
Query: 754 DINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCNKVFEE 798
N S + D +L G+ N+Y+L +G V + ++
Sbjct: 390 HTNLSAITTFYVSD--NILVSGSENQFNIYNLRSGKLVHANILKD 432
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 57/281 (20%), Positives = 111/281 (39%), Gaps = 36/281 (12%)
Query: 615 ERSAVLSSMTLSSLCILPDNCTMLVGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDE 674
+R+ + MT C+ ++ ++ G D + +YD + + +L+GH+ + + +
Sbjct: 113 QRTTLRGHMTSVITCLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAH 172
Query: 675 KRKRLISGSWDCTVRVWNTGAS-WSHMKPSKSLVSQLDLDNRIKCLAISKDNN--QLAVG 731
L+SGS D TVRVW+ +H+ ++ ++CL I + N + G
Sbjct: 173 G-GILVSGSTDRTVRVWDIKKGCCTHVFEGH--------NSTVRCLDIVEYKNIKYIVTG 223
Query: 732 TEAGELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQV 791
+ L +W L +SV D V V L M
Sbjct: 224 SRDNTLHVWKLPKE-----------SSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMAS 272
Query: 792 CNKVFEEKLLCLSWAGEEKVILGGALGMVYLV-DLIQVQLLKQVRAHKDAVLSLHFDNCT 850
V +G +++ G+ +V D+ Q++ L + H D + S +D+
Sbjct: 273 VRTV----------SGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHER 322
Query: 851 M--LVGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEK 889
+ D+ + I+D+E G ++ L GH + + +K
Sbjct: 323 KRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLSDK 363
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 41/75 (54%)
Query: 834 VRAHKDAVLSLHFDNCTMLVGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRL 893
+R H +V ++ ++ G +D+ ++++DV + + L+GH D I +D +RKR
Sbjct: 266 LRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRC 325
Query: 894 ISGNLVGAPKLYATE 908
IS ++ +++ E
Sbjct: 326 ISASMDTTIRIWDLE 340
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 51.2 bits (121), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 57/272 (20%), Positives = 115/272 (42%), Gaps = 25/272 (9%)
Query: 610 KTGRQERSAVLSSMTLSSLCILPDNCTMLVGCWDSCVVIYDVECGRIVTELAGHEDAISC 669
K G RS S + + D L WD + ++DV G GH+ +
Sbjct: 53 KFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMS 112
Query: 670 VAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISK-DNNQL 728
V D+K +ISGS D T++VW + +L+ D ++++ + K D++ +
Sbjct: 113 VDIDKKASMIISGSRDKTIKVWTIKG-----QCLATLLGHNDWVSQVRVVPNEKADDDSV 167
Query: 729 AVGTEAGELII--WSLENHLMTQQLSDDI---NASVNGVLFSEDGCRVLSCGNNCMLNVY 783
+ + + ++ W+L Q+ D N+++N + S DG + S G + + ++
Sbjct: 168 TIISAGNDKMVKAWNLNQF----QIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLW 223
Query: 784 DLTTGMQVCNKVFEEKLLCLSW--------AGEEKVILGGALGMVYLVDLIQVQLLKQVR 835
+L + ++++ L++ A I +L YLVD ++ +
Sbjct: 224 NLAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSA 283
Query: 836 AHKDAVLSLHF--DNCTMLVGCWDSCVVIYDV 865
A + +SL + D T+ G D+ + ++ V
Sbjct: 284 AAEPHAVSLAWSADGQTLFAGYTDNVIRVWQV 315
Score = 34.3 bits (77), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 25/55 (45%)
Query: 843 SLHFDNCTMLVGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGN 897
+L D L WD + ++DV G GH+ + V D+K +ISG+
Sbjct: 72 TLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGS 126
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 55/247 (22%), Positives = 110/247 (44%), Gaps = 24/247 (9%)
Query: 652 ECGRIVTELAGHEDAISCVAWDEKRKR----LISGSWDCTVRVWN-----TGASWSHMKP 702
+ G + + H+DAI VAW +K +++GS D V+VW WS ++
Sbjct: 20 QYGILFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWS-LEG 78
Query: 703 SKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGELIIWSLENHLMTQQLSDDINASVNGV 762
+ V +D+ + + A S + + +W LEN + + D +
Sbjct: 79 HQLGVVSVDISHTLPIAASSSLDAHIR---------LWDLENGKQIKSI-DAGPVDAWTL 128
Query: 763 LFSEDGCRVLSCGNNCMLNVYDLTTGMQVCNKVFEEK-LLCLSWAGEEKVILGGAL-GMV 820
FS D + + + +N++ + +G + + K +L ++++ + K + GA+ G++
Sbjct: 129 AFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGII 188
Query: 821 YLVDLIQVQLLKQVRAHKDAVLSLHF--DNCTMLVGCWDSCVVIYDVECGRIVTELAGHE 878
+ D+ +LL + H + SL F D+ ++ D + IYDV+ + L+GH
Sbjct: 189 NIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHA 248
Query: 879 DAISCVA 885
+ VA
Sbjct: 249 SWVLNVA 255
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/181 (18%), Positives = 80/181 (44%), Gaps = 8/181 (4%)
Query: 604 LKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTMLVGCWDSCVVIYDVECGRIVTELAGH 663
+ I +++G++E S + S+ PD + G D + I+D+ G+++ L GH
Sbjct: 146 VNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGH 205
Query: 664 EDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISK 723
I + + + L++ S D +++++ H + +L + + +A
Sbjct: 206 AMPIRSLTFSPDSQLLVTASDDGYIKIYDV----QHANLAGTLSGHA---SWVLNVAFCP 258
Query: 724 DNNQLAVGTEAGELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCGNNCMLNVY 783
D+ + + +W + D + V GV ++ +G +++S G++ +++Y
Sbjct: 259 DDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQD-QVWGVKYNGNGSKIVSVGDDQEIHIY 317
Query: 784 D 784
D
Sbjct: 318 D 318
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 43/89 (48%)
Query: 583 ITAVAICGEGISVASVGRDAMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTMLVGCW 642
I ++A +G +AS D ++ I + TG+ + +M + SL PD+ ++
Sbjct: 167 ILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASD 226
Query: 643 DSCVVIYDVECGRIVTELAGHEDAISCVA 671
D + IYDV+ + L+GH + VA
Sbjct: 227 DGYIKIYDVQHANLAGTLSGHASWVLNVA 255
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 49/219 (22%), Positives = 92/219 (42%), Gaps = 10/219 (4%)
Query: 578 SHKEAITAVAICGEGISVASVGRDAMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTM 637
H+ + +V I AS DA +++ L+ G+Q +S + +L PD+ +
Sbjct: 78 GHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYL 137
Query: 638 LVGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASW 697
G V I+ VE G+ L I +A+ K L SG+ D + +++
Sbjct: 138 ATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFD----- 192
Query: 698 SHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGELIIWSLENHLMTQQLSDDINA 757
+ K L + I+ L S D+ L ++ G + I+ +++ + LS +
Sbjct: 193 --IATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASW 250
Query: 758 SVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCNKVF 796
+N V F D +S ++ + V+D+ G + C F
Sbjct: 251 VLN-VAFCPDDTHFVSSSSDKSVKVWDV--GTRTCVHTF 286
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine
Apaf-1
Length = 1256
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 52/225 (23%), Positives = 99/225 (44%), Gaps = 33/225 (14%)
Query: 579 HKEAITAVAICGEGISVASVGRDAMLKIHSLKTG-------RQERSAVLSSMTLSSLCIL 631
HK+A+ + +G ++ S D+++++ + +TG QE T+ +L
Sbjct: 1009 HKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVFLQAHQE--------TVKDFRLL 1060
Query: 632 PDNCTMLVGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVW 691
D+ +L +D V +++V GRI + H+ + A + S S D T ++W
Sbjct: 1061 QDS-RLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIW 1119
Query: 692 NTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGELIIWSLENHLMTQQ- 750
S+ + P L + ++C A S D LA G + GE+ IW++ + +
Sbjct: 1120 ----SFDLLSPLHELKGH---NGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSC 1172
Query: 751 --LSDDINASVNG-----VLFSEDGCRVLSCGNNCMLNVYDLTTG 788
+S + + +G V FS D ++S G L +++ TG
Sbjct: 1173 APISVEEGTATHGGWVTDVCFSPDSKTLVSAGG--YLKWWNVATG 1215
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 53/255 (20%), Positives = 102/255 (40%), Gaps = 29/255 (11%)
Query: 643 DSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKP 702
D + ++ E G + ++ HED + C A+ + + S D V++W++
Sbjct: 643 DKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSA-------- 694
Query: 703 SKSLVSQLD-LDNRIKCLAISKDNNQLAVGTEAGE--LIIWSLENHLMTQQLSDDINASV 759
+ LV D ++ C + +N L + T + + L +W L + N SV
Sbjct: 695 TGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTN-SV 753
Query: 760 NGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQ---VCNKVF-----------EEKLLCLSW 805
N FS D + SC + L ++D+ + + + K F E + C SW
Sbjct: 754 NHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSW 813
Query: 806 AGEEKVILGGALGMVYLVDLIQVQLLKQVR-AHKDAVLSLHFD--NCTMLVGCWDSCVVI 862
+ + I+ A V L D+ LL ++ H + F + ++ CV +
Sbjct: 814 SADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVEL 873
Query: 863 YDVECGRIVTELAGH 877
++++ V + GH
Sbjct: 874 WNIDSRLKVADCRGH 888
Score = 43.1 bits (100), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 36/154 (23%), Positives = 72/154 (46%), Gaps = 6/154 (3%)
Query: 758 SVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCN-KVFEEKLLCLSWAGEEKVILG-G 815
+V FS+DG R+ SCG + L V+ TG ++ + K E+++LC +++ ++ I
Sbjct: 624 AVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCS 683
Query: 816 ALGMVYLVDLIQVQLLKQVRAHKDAVLSLHFDNCT----MLVGCWDSCVVIYDVECGRIV 871
A V + D +L+ H + V HF N + + G D + ++D+
Sbjct: 684 ADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECR 743
Query: 872 TELAGHEDAISCVAWDEKRKRLISGNLVGAPKLY 905
+ GH ++++ + + L S + G +L+
Sbjct: 744 NTMFGHTNSVNHCRFSPDDELLASCSADGTLRLW 777
Score = 43.1 bits (100), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 49/242 (20%), Positives = 98/242 (40%), Gaps = 28/242 (11%)
Query: 564 WCDKSILEPLH--FCHSHKEAITAVAICGEGISVASVGRDAMLKIHSLKTGRQERSAVLS 621
W +K ++ L H +A+ +G +AS G D L++ +TG E+ +
Sbjct: 604 WINKKTIKNLSRLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETG--EKLLDIK 661
Query: 622 SMTLSSLC--ILPDNCTMLVGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRL 679
+ LC D+ + D V I+D G++V H + ++C + K L
Sbjct: 662 AHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHL 721
Query: 680 I--SGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGEL 737
+ +GS D +++W+ + + + N + S D+ LA + G L
Sbjct: 722 LLATGSNDFFLKLWD-------LNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTL 774
Query: 738 IIWSLEN------------HLMTQQLSDDINASVNGVLFSEDGCRVLSCGNNCMLNVYDL 785
+W + + L ++ +D+ V +S DG +++ N +L ++D+
Sbjct: 775 RLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVL-LFDI 833
Query: 786 TT 787
T
Sbjct: 834 HT 835
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 67/348 (19%), Positives = 133/348 (38%), Gaps = 35/348 (10%)
Query: 590 GEGISVASVGRDAMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTMLVGCWDSCVVIY 649
G+ I VA+ + + IH+ +G T+ P + ++ CV ++
Sbjct: 817 GDKIIVAAKNKVLLFDIHT--SGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELW 874
Query: 650 DVECGRIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSH----MKPSKS 705
+++ V + GH + V + ++ S D T+RVW T + +K
Sbjct: 875 NIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEID 934
Query: 706 LVSQ------LDLDN--------------------RIKCLAISKDNNQLAVGTEAGELII 739
+V Q L +DN ++ C +S +A G E G + I
Sbjct: 935 VVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKI 994
Query: 740 WSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCNKVFEEK 799
L N+ + A V + F+ DG ++S + ++ V++ TG V + +E
Sbjct: 995 IELPNNRVFSSGVGHKKA-VRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVFLQAHQET 1053
Query: 800 LLCLSWAGEEKVILGGALGMVYLVDLIQVQLLKQVRAHKDAVLS--LHFDNCTMLVGCWD 857
+ + +++ G V + ++I ++ + H+ VLS + D D
Sbjct: 1054 VKDFRLLQDSRLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSAD 1113
Query: 858 SCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGNLVGAPKLY 905
I+ + + EL GH + C A+ L +G+ G +++
Sbjct: 1114 KTAKIWSFDLLSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIW 1161
Score = 36.6 bits (83), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 28/118 (23%), Positives = 48/118 (40%), Gaps = 1/118 (0%)
Query: 575 FCHSHKEAITAVAICGEGISVASVGRDAMLKIHSLKTGRQERSAVLSSMTLSSLCILPDN 634
F +H+E + + + + S D +K+ ++ TGR ER T+ S I D
Sbjct: 1046 FLQAHQETVKDFRLLQDS-RLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDA 1104
Query: 635 CTMLVGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWN 692
D I+ + + EL GH + C A+ L +G + +R+WN
Sbjct: 1105 TKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWN 1162
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 50.4 bits (119), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 52/225 (23%), Positives = 99/225 (44%), Gaps = 33/225 (14%)
Query: 579 HKEAITAVAICGEGISVASVGRDAMLKIHSLKTG-------RQERSAVLSSMTLSSLCIL 631
HK+A+ + +G ++ S D+++++ + +TG QE T+ +L
Sbjct: 1002 HKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVFLQAHQE--------TVKDFRLL 1053
Query: 632 PDNCTMLVGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVW 691
D+ +L +D V +++V GRI + H+ + A + S S D T ++W
Sbjct: 1054 QDS-RLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIW 1112
Query: 692 NTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGELIIWSLENHLMTQQ- 750
S+ + P L + ++C A S D LA G + GE+ IW++ + +
Sbjct: 1113 ----SFDLLSPLHELKGH---NGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSC 1165
Query: 751 --LSDDINASVNG-----VLFSEDGCRVLSCGNNCMLNVYDLTTG 788
+S + + +G V FS D ++S G L +++ TG
Sbjct: 1166 APISVEEGTATHGGWVTDVCFSPDSKTLVSAGG--YLKWWNVATG 1208
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 53/255 (20%), Positives = 102/255 (40%), Gaps = 29/255 (11%)
Query: 643 DSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKP 702
D + ++ E G + ++ HED + C A+ + + S D V++W++
Sbjct: 636 DKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSA-------- 687
Query: 703 SKSLVSQLD-LDNRIKCLAISKDNNQLAVGTEAGE--LIIWSLENHLMTQQLSDDINASV 759
+ LV D ++ C + +N L + T + + L +W L + N SV
Sbjct: 688 TGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTN-SV 746
Query: 760 NGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQ---VCNKVF-----------EEKLLCLSW 805
N FS D + SC + L ++D+ + + + K F E + C SW
Sbjct: 747 NHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSW 806
Query: 806 AGEEKVILGGALGMVYLVDLIQVQLLKQVR-AHKDAVLSLHFD--NCTMLVGCWDSCVVI 862
+ + I+ A V L D+ LL ++ H + F + ++ CV +
Sbjct: 807 SADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVEL 866
Query: 863 YDVECGRIVTELAGH 877
++++ V + GH
Sbjct: 867 WNIDSRLKVADCRGH 881
Score = 43.1 bits (100), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 36/154 (23%), Positives = 72/154 (46%), Gaps = 6/154 (3%)
Query: 758 SVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCN-KVFEEKLLCLSWAGEEKVILG-G 815
+V FS+DG R+ SCG + L V+ TG ++ + K E+++LC +++ ++ I
Sbjct: 617 AVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCS 676
Query: 816 ALGMVYLVDLIQVQLLKQVRAHKDAVLSLHFDNCT----MLVGCWDSCVVIYDVECGRIV 871
A V + D +L+ H + V HF N + + G D + ++D+
Sbjct: 677 ADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECR 736
Query: 872 TELAGHEDAISCVAWDEKRKRLISGNLVGAPKLY 905
+ GH ++++ + + L S + G +L+
Sbjct: 737 NTMFGHTNSVNHCRFSPDDELLASCSADGTLRLW 770
Score = 43.1 bits (100), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 49/242 (20%), Positives = 98/242 (40%), Gaps = 28/242 (11%)
Query: 564 WCDKSILEPLH--FCHSHKEAITAVAICGEGISVASVGRDAMLKIHSLKTGRQERSAVLS 621
W +K ++ L H +A+ +G +AS G D L++ +TG E+ +
Sbjct: 597 WINKKTIKNLSRLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETG--EKLLDIK 654
Query: 622 SMTLSSLC--ILPDNCTMLVGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRL 679
+ LC D+ + D V I+D G++V H + ++C + K L
Sbjct: 655 AHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHL 714
Query: 680 I--SGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGEL 737
+ +GS D +++W+ + + + N + S D+ LA + G L
Sbjct: 715 LLATGSNDFFLKLWD-------LNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTL 767
Query: 738 IIWSLEN------------HLMTQQLSDDINASVNGVLFSEDGCRVLSCGNNCMLNVYDL 785
+W + + L ++ +D+ V +S DG +++ N +L ++D+
Sbjct: 768 RLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVL-LFDI 826
Query: 786 TT 787
T
Sbjct: 827 HT 828
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 67/348 (19%), Positives = 133/348 (38%), Gaps = 35/348 (10%)
Query: 590 GEGISVASVGRDAMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTMLVGCWDSCVVIY 649
G+ I VA+ + + IH+ +G T+ P + ++ CV ++
Sbjct: 810 GDKIIVAAKNKVLLFDIHT--SGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELW 867
Query: 650 DVECGRIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSH----MKPSKS 705
+++ V + GH + V + ++ S D T+RVW T + +K
Sbjct: 868 NIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEID 927
Query: 706 LVSQ------LDLDN--------------------RIKCLAISKDNNQLAVGTEAGELII 739
+V Q L +DN ++ C +S +A G E G + I
Sbjct: 928 VVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKI 987
Query: 740 WSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCNKVFEEK 799
L N+ + A V + F+ DG ++S + ++ V++ TG V + +E
Sbjct: 988 IELPNNRVFSSGVGHKKA-VRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVFLQAHQET 1046
Query: 800 LLCLSWAGEEKVILGGALGMVYLVDLIQVQLLKQVRAHKDAVLS--LHFDNCTMLVGCWD 857
+ + +++ G V + ++I ++ + H+ VLS + D D
Sbjct: 1047 VKDFRLLQDSRLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSAD 1106
Query: 858 SCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGNLVGAPKLY 905
I+ + + EL GH + C A+ L +G+ G +++
Sbjct: 1107 KTAKIWSFDLLSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIW 1154
Score = 36.6 bits (83), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 28/118 (23%), Positives = 48/118 (40%), Gaps = 1/118 (0%)
Query: 575 FCHSHKEAITAVAICGEGISVASVGRDAMLKIHSLKTGRQERSAVLSSMTLSSLCILPDN 634
F +H+E + + + + S D +K+ ++ TGR ER T+ S I D
Sbjct: 1039 FLQAHQETVKDFRLLQDS-RLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDA 1097
Query: 635 CTMLVGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWN 692
D I+ + + EL GH + C A+ L +G + +R+WN
Sbjct: 1098 TKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWN 1155
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 50.1 bits (118), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 50/267 (18%), Positives = 108/267 (40%), Gaps = 32/267 (11%)
Query: 632 PDNCTMLVGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVW 691
P M+ D+ + ++D E G L GH D++ +++D K L S S D T+++W
Sbjct: 118 PVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLW 177
Query: 692 NTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGELIIWSLENHLMTQQL 751
+ + + + + D+ + ++I + + + + + +W ++ +
Sbjct: 178 D-------FQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTF 230
Query: 752 SDDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCNKVFEEK---LLCLSWAGE 808
+ V V ++DG + SC N+ + V+ + T + C E + C+SWA E
Sbjct: 231 TGH-REWVRMVRPNQDGTLIASCSNDQTVRVWVVAT--KECKAELREHRHVVECISWAPE 287
Query: 809 EKVILGGALGMVYLVDLIQVQLLKQVRAHKDAVLSLHFDNCTMLVGCWDSCVVIYDVECG 868
+ + + ++ K +L G D + ++DV G
Sbjct: 288 SS-----------YSSISEATGSETKKSGKPGPF--------LLSGSRDKTIKMWDVSTG 328
Query: 869 RIVTELAGHEDAISCVAWDEKRKRLIS 895
+ L GH++ + V + K ++S
Sbjct: 329 MCLMTLVGHDNWVRGVLFHSGGKFILS 355
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 47/219 (21%), Positives = 90/219 (41%), Gaps = 14/219 (6%)
Query: 579 HKEAITAVAICGEGISVASVGRDAMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTML 638
H +++ ++ G +AS D +K+ + R+ +SS+ I+P+ ++
Sbjct: 149 HTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIV 208
Query: 639 VGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVW--NTGAS 696
D + +++V+ G V GH + + V ++ + S S D TVRVW T
Sbjct: 209 SASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKEC 268
Query: 697 WSHMKPSKSLVSQLDLDNRIKCLAISKDNNQ-----------LAVGTEAGELIIWSLENH 745
+ ++ + +V + +IS+ L G+ + +W +
Sbjct: 269 KAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTG 328
Query: 746 LMTQQLSDDINASVNGVLFSEDGCRVLSCGNNCMLNVYD 784
+ L N V GVLF G +LSC ++ L V+D
Sbjct: 329 MCLMTLVGHDNW-VRGVLFHSGGKFILSCADDKTLRVWD 366
Score = 37.7 bits (86), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 65/308 (21%), Positives = 129/308 (41%), Gaps = 28/308 (9%)
Query: 579 HKEAITAVAICGEGISVASVGRDAMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNC-TM 637
H+ +T V + S DA +K+ +TG ER+ L T S I D+ +
Sbjct: 107 HRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERT--LKGHTDSVQDISFDHSGKL 164
Query: 638 LVGC-WDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVW--NTG 694
L C D + ++D + + + GH+ +S V+ ++S S D T+++W TG
Sbjct: 165 LASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTG 224
Query: 695 ---------ASWSHM-KPSK--SLVSQLDLDN--RIKCLAISKDNNQLAVGTEAGELIIW 740
W M +P++ +L++ D R+ +A + +L E I W
Sbjct: 225 YCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISW 284
Query: 741 SLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCNKVFEEKL 800
+ E+ + + +G + G +LS + + ++D++TGM + V +
Sbjct: 285 APESSYSSISEATGSETKKSG----KPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNW 340
Query: 801 L--CLSWAGEEKVILGGALGMVYLVDLIQVQLLKQVRAHKDAVLSLHFDNCT--MLVGCW 856
+ L +G + ++ + + D + +K + AH+ V SL F ++ G
Sbjct: 341 VRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSV 400
Query: 857 DSCVVIYD 864
D V +++
Sbjct: 401 DQTVKVWE 408
Score = 31.2 bits (69), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 43/229 (18%), Positives = 82/229 (35%), Gaps = 50/229 (21%)
Query: 660 LAGHEDAISCVAWDEKRKRLISGSWDCTVRVWN--TGASWSHMKPSKSLVSQLDLDNRIK 717
L+GH ++ V + ++S S D T++VW+ TG +K V + D+ K
Sbjct: 104 LSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGK 163
Query: 718 CLAISKDNNQLAVGTEAGELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCGNN 777
LA + + + G I ++ H + +V+ V +G ++S +
Sbjct: 164 LLASCSADMTIKLWDFQGFECIRTMHGH----------DHNVSSVSIMPNGDHIVSASRD 213
Query: 778 CMLNVYDLTTGMQVCNKVFEEKLLCLSWAGEEKVILGGALGMVYLVDLIQVQLLKQVRAH 837
+ ++++ TG C K F + ++ VR +
Sbjct: 214 KTIKMWEVQTGY--CVKTFTG----------------------------HREWVRMVRPN 243
Query: 838 KDAVLSLHFDNCTMLVGCWDSCVVIYDVECGRIVTELAGHEDAISCVAW 886
+D L N D V ++ V EL H + C++W
Sbjct: 244 QDGTLIASCSN--------DQTVRVWVVATKECKAELREHRHVVECISW 284
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 55/251 (21%), Positives = 106/251 (42%), Gaps = 31/251 (12%)
Query: 548 SSLLKHSTILSDVSNSWCDKSILEPLHFCHSHKEAITAVAICGEGISVASVGRDAMLKIH 607
S+ HS L ++ N C L H + + +VA + + S GRD L++
Sbjct: 84 SASWDHSLRLWNLQNGQCQYKFL-------GHTKDVLSVAFSPDNRQIVSGGRDNALRVW 136
Query: 608 SLKT------GRQERSAVLSSMTLSSLCILPDNCTMLVGCWDSCVVIYDVECGRIVTELA 661
++K R + +S + S P ++ G WD+ V ++D+ GR+VT+L
Sbjct: 137 NVKGECMHTLSRGAHTDWVSCVRFSPSLDAP---VIVSGGWDNLVKVWDLATGRLVTDLK 193
Query: 662 GHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAI 721
GH + ++ V S D R+W+ + ++L S++ I +
Sbjct: 194 GHTNYVTSVTVSPDGSLCASSDKDGVARLWD-------LTKGEAL-SEMAAGAPINQICF 245
Query: 722 SKDNNQLAVGTEAGELIIWSLENHLMTQQLSDDINASVN------GVLFSEDGCRVLSCG 775
S + + TE G + I+ LEN + +L+ + S + +S DG + S
Sbjct: 246 SPNRYWMCAATEKG-IRIFDLENKDIIVELAPEHQGSKKIVPECVSIAWSADGSTLYSGY 304
Query: 776 NNCMLNVYDLT 786
+ ++ V+ ++
Sbjct: 305 TDNVIRVWGVS 315
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/159 (23%), Positives = 74/159 (46%), Gaps = 11/159 (6%)
Query: 756 NASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCNKVF---EEKLLCLSWAGEEKVI 812
+A V+ V S +G +S + L +++L G C F + +L ++++ + + I
Sbjct: 67 SAFVSDVALSNNGNFAVSASWDHSLRLWNLQNGQ--CQYKFLGHTKDVLSVAFSPDNRQI 124
Query: 813 LGGALGMVYLVDLIQVQLLKQVR--AHKDAVLSLHF----DNCTMLVGCWDSCVVIYDVE 866
+ G V ++ + + + AH D V + F D ++ G WD+ V ++D+
Sbjct: 125 VSGGRDNALRVWNVKGECMHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNLVKVWDLA 184
Query: 867 CGRIVTELAGHEDAISCVAWDEKRKRLISGNLVGAPKLY 905
GR+VT+L GH + ++ V S + G +L+
Sbjct: 185 TGRLVTDLKGHTNYVTSVTVSPDGSLCASSDKDGVARLW 223
Score = 39.7 bits (91), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 34/149 (22%), Positives = 62/149 (41%), Gaps = 9/149 (6%)
Query: 642 WDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMK 701
WD + +++++ G+ + GH + VA+ ++++SG D +RVWN H
Sbjct: 87 WDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPDNRQIVSGGRDNALRVWNVKGECMHT- 145
Query: 702 PSKSLVSQLDLDNRIKCLAISK--DNNQLAVGTEAGELIIWSLENHLMTQQLSDDINASV 759
+S+ + + C+ S D + G + +W L + L N V
Sbjct: 146 -----LSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNLVKVWDLATGRLVTDLKGHTNY-V 199
Query: 760 NGVLFSEDGCRVLSCGNNCMLNVYDLTTG 788
V S DG S + + ++DLT G
Sbjct: 200 TSVTVSPDGSLCASSDKDGVARLWDLTKG 228
>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2
Length = 425
Score = 46.2 bits (108), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 45/222 (20%), Positives = 97/222 (43%), Gaps = 21/222 (9%)
Query: 714 NRIKCLAISKDNNQLAVGTEAGELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLS 773
N++ CLA S D N + G E GEL +W+ L+ + + A + V +++DG ++S
Sbjct: 109 NQVTCLAWSHDGNSIVTGVENGELRLWNKTGALL--NVLNFHRAPIVSVKWNKDGTHIIS 166
Query: 774 CGNNCMLNVYDLTTG---------------MQVCNKVFEEKL-LCLSWAGEEKVILGGAL 817
+ ++++ +G + N + L + + W ++K ++ G
Sbjct: 167 MDVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPK 226
Query: 818 GMVYLVDLIQVQLLKQVRAHKDAVLSLHFD--NCTMLVGCWDSCVVIYDVECGRIVTELA 875
G +++ + + ++ H + L F+ N +L D + I+ G
Sbjct: 227 GAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFY 286
Query: 876 GHEDAISCVAWDEKRKRLISGNLVGAPKLYATEFYLLYVLTV 917
GH +I +W K +IS ++ G+ +L++ + L L++
Sbjct: 287 GHSQSIVSASWVGDDK-VISCSMDGSVRLWSLKQNTLLALSI 327
Score = 38.1 bits (87), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 67/146 (45%), Gaps = 17/146 (11%)
Query: 644 SCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSH---M 700
+ +Y + +L GH IS + +++ K L+S S D T+R+W+ G S
Sbjct: 227 GAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFY 286
Query: 701 KPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGELIIWSL-ENHLMTQQLSDDINASV 759
S+S+VS + + K ++ S D G + +WSL +N L+ + D + +
Sbjct: 287 GHSQSIVSASWVGDD-KVISCSMD----------GSVRLWSLKQNTLLALSIVDGV--PI 333
Query: 760 NGVLFSEDGCRVLSCGNNCMLNVYDL 785
S+DG + + +NVYDL
Sbjct: 334 FAGRISQDGQKYAVAFMDGQVNVYDL 359
Score = 32.7 bits (73), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 38/188 (20%), Positives = 80/188 (42%), Gaps = 9/188 (4%)
Query: 652 ECGRIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWN--TGASWSHMKPSKSLVSQ 709
+ G ++ L H I V W++ +IS + +WN +G H + ++ S
Sbjct: 137 KTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSS 196
Query: 710 LDLDNRIKCLAIS-----KDNNQLAVGTEAGELIIWSLENHLMTQQLSDDINASVNGVLF 764
++ +N ++ D+++ + G + ++ + T +L + ++ + F
Sbjct: 197 INAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGH-HGPISVLEF 255
Query: 765 SEDGCRVLSCGNNCMLNVYDLTTG-MQVCNKVFEEKLLCLSWAGEEKVILGGALGMVYLV 823
++ +LS ++ L ++ G Q C + ++ SW G++KVI G V L
Sbjct: 256 NDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDDKVISCSMDGSVRLW 315
Query: 824 DLIQVQLL 831
L Q LL
Sbjct: 316 SLKQNTLL 323
>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|D Chain D, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|G Chain G, Crystal Structure Of Mitotic Checkpoint Complex
Length = 401
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 80/186 (43%), Gaps = 16/186 (8%)
Query: 633 DNCTMLVGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWN 692
D + VG + V IYDVE + +AGH+ + C++W+ R L SGS
Sbjct: 145 DGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSWN--RHVLSSGS--------R 194
Query: 693 TGASWSH-MKPSKSLVSQLDLDNRIKC-LAISKDNNQLAVGTEAGELIIWSLENHLMTQQ 750
+GA H ++ + + L + C LA D QLA G + IW + + +
Sbjct: 195 SGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSI-PKF 253
Query: 751 LSDDINASVNGVLFSEDGCRVLSCGNNCM---LNVYDLTTGMQVCNKVFEEKLLCLSWAG 807
+ NA+V V + +L+ G M ++ ++ TG +V ++ L W+
Sbjct: 254 TKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDAGSQVTSLIWSP 313
Query: 808 EEKVIL 813
K I+
Sbjct: 314 HSKEIM 319
Score = 38.9 bits (89), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 39/166 (23%), Positives = 72/166 (43%), Gaps = 8/166 (4%)
Query: 726 NQLAVGTEAGELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCG-NNCMLNVYD 784
N +AV E + +W+ ++ ++ D + V V +S DG LS G N ++++YD
Sbjct: 105 NVVAVALER-NVYVWNADSGSVSALAETDESTYVASVKWSHDGS-FLSVGLGNGLVDIYD 162
Query: 785 LTTGMQVCNKV-FEEKLLCLSWAGEEKVILGGALGMVYLVDL-IQVQLLKQVRAHKDAVL 842
+ + ++ + ++ CLSW + G G ++ D+ I + ++ H V
Sbjct: 163 VESQTKLRTMAGHQARVGCLSW-NRHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVC 221
Query: 843 SLHF--DNCTMLVGCWDSCVVIYDVECGRIVTELAGHEDAISCVAW 886
L + D + G D+ V I+D H A+ VAW
Sbjct: 222 GLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAW 267
Score = 37.0 bits (84), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
Query: 840 AVLSLHFDNCTMLVGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGNLV 899
A + D + VG + V IYDVE + +AGH+ + C++W+ R L SG+
Sbjct: 138 ASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSWN--RHVLSSGSRS 195
Query: 900 GA 901
GA
Sbjct: 196 GA 197
>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
Length = 310
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 38/173 (21%), Positives = 77/173 (44%), Gaps = 11/173 (6%)
Query: 637 MLVGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGAS 696
++VG D + +++ G V + H D I +A + ++SGS D TV++WN +
Sbjct: 70 IIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENN 129
Query: 697 WSHMKPSKSLVSQLDLDNRIKCLAIS-KDNNQLAVGTEAGELIIWSLENHLMTQQLSDDI 755
W+ + + ++ + C+A + KD + A G + +WSL L+
Sbjct: 130 WALEQTFEG------HEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQ 183
Query: 756 NASVNGVLFS--EDGCRVLSCGNNCMLNVYDLTTGMQVCNKVFEEKLLCLSWA 806
VN V + D +++ ++ + ++D T + C E + +S+A
Sbjct: 184 ERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQT--KSCVATLEGHMSNVSFA 234
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 51/111 (45%), Gaps = 9/111 (8%)
Query: 631 LPDNCTMLVGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRV 690
LPD M+ D + I+D + V L GH +S + +ISGS D T+++
Sbjct: 195 LPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKI 254
Query: 691 WNTGASWSHMKPSKSLVSQLDLDNRIKCLAI--SKDNNQLAVGTEAGELII 739
WN+ S K K+L L+ R C+A + N +A G + G ++
Sbjct: 255 WNS----STYKVEKTLNVGLE---RSWCIATHPTGRKNYIASGFDNGFTVL 298
>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
Length = 304
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 38/173 (21%), Positives = 77/173 (44%), Gaps = 11/173 (6%)
Query: 637 MLVGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGAS 696
++VG D + +++ G V + H D I +A + ++SGS D TV++WN +
Sbjct: 70 IIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENN 129
Query: 697 WSHMKPSKSLVSQLDLDNRIKCLAIS-KDNNQLAVGTEAGELIIWSLENHLMTQQLSDDI 755
W+ + + ++ + C+A + KD + A G + +WSL L+
Sbjct: 130 WALEQTFEG------HEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQ 183
Query: 756 NASVNGVLFS--EDGCRVLSCGNNCMLNVYDLTTGMQVCNKVFEEKLLCLSWA 806
VN V + D +++ ++ + ++D T + C E + +S+A
Sbjct: 184 ERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQT--KSCVATLEGHMSNVSFA 234
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 51/111 (45%), Gaps = 9/111 (8%)
Query: 631 LPDNCTMLVGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRV 690
LPD M+ D + I+D + V L GH +S + +ISGS D T+++
Sbjct: 195 LPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKI 254
Query: 691 WNTGASWSHMKPSKSLVSQLDLDNRIKCLAI--SKDNNQLAVGTEAGELII 739
WN+ S K K+L L+ R C+A + N +A G + G ++
Sbjct: 255 WNS----STYKVEKTLNVGLE---RSWCIATHPTGRKNYIASGFDNGFTVL 298
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 814
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 42/206 (20%), Positives = 91/206 (44%), Gaps = 11/206 (5%)
Query: 604 LKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTMLVGCWDSCVVIYDVECGRIVTELAGH 663
++I + +T + RS ++ + + + ++VG D + +++ G V + H
Sbjct: 37 VEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAH 96
Query: 664 EDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAIS- 722
D I +A + ++SGS D TV++WN +W+ + + ++ + C+A +
Sbjct: 97 PDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEG------HEHFVMCVAFNP 150
Query: 723 KDNNQLAVGTEAGELIIWSLENHLMTQQLSDDINASVNGVLFS--EDGCRVLSCGNNCML 780
KD + A G + +WSL L+ VN V + D +++ ++ +
Sbjct: 151 KDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTI 210
Query: 781 NVYDLTTGMQVCNKVFEEKLLCLSWA 806
++D T + C E + +S+A
Sbjct: 211 KIWDYQT--KSCVATLEGHMSNVSFA 234
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 55/123 (44%), Gaps = 10/123 (8%)
Query: 631 LPDNCTMLVGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRV 690
LPD M+ D + I+D + V L GH +S + +ISGS D T+++
Sbjct: 195 LPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKI 254
Query: 691 WNTGASWSHMKPSKSLVSQLDLDNRIKCLAI--SKDNNQLAVGTEAGELIIWSLENHLMT 748
WN+ S K K+L L+ R C+A + N +A G + G + SL N T
Sbjct: 255 WNS----STYKVEKTLNVGLE---RSWCIATHPTGRKNYIASGFDNG-FTVLSLGNDEPT 306
Query: 749 QQL 751
L
Sbjct: 307 LSL 309
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
Length = 604
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/173 (21%), Positives = 77/173 (44%), Gaps = 11/173 (6%)
Query: 637 MLVGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGAS 696
++VG D + +++ G V + H D I +A + ++SGS D TV++WN +
Sbjct: 70 IIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENN 129
Query: 697 WSHMKPSKSLVSQLDLDNRIKCLAIS-KDNNQLAVGTEAGELIIWSLENHLMTQQLSDDI 755
W+ + + ++ + C+A + KD + A G + +WSL L+
Sbjct: 130 WALEQTFEG------HEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQ 183
Query: 756 NASVNGVLFS--EDGCRVLSCGNNCMLNVYDLTTGMQVCNKVFEEKLLCLSWA 806
VN V + D +++ ++ + ++D T + C E + +S+A
Sbjct: 184 ERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQT--KSCVATLEGHMSNVSFA 234
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 56/123 (45%), Gaps = 10/123 (8%)
Query: 631 LPDNCTMLVGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRV 690
LPD M+ D + I+D + V L GH +S + +ISGS D T+++
Sbjct: 195 LPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKI 254
Query: 691 WNTGASWSHMKPSKSLVSQLDLDNRIKCLAI--SKDNNQLAVGTEAGELIIWSLENHLMT 748
WN+ S K K+L L+ R C+A + N +A G + G ++ SL N T
Sbjct: 255 WNS----STYKVEKTLNVGLE---RSWCIATHPTGRKNYIASGFDNGFTVL-SLGNDEPT 306
Query: 749 QQL 751
L
Sbjct: 307 LSL 309
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 56/118 (47%), Gaps = 6/118 (5%)
Query: 578 SHKEAITAVAICGEGISVASVGRDAMLKIHSLKTGRQERSAVLSSMTL----SSLCILPD 633
+H+ + +V G + AS DA +++ L+ R+ A+ S ++ SS+
Sbjct: 238 THESDVNSVRYYPSGDAFASGSDDATCRLYDLRADRE--VAIYSKESIIFGASSVDFSLS 295
Query: 634 NCTMLVGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVW 691
+ G D + ++DV G V+ L GHE+ +S + SGSWD T+RVW
Sbjct: 296 GRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVW 353
Score = 37.4 bits (85), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 46/223 (20%), Positives = 87/223 (39%), Gaps = 26/223 (11%)
Query: 700 MKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGELIIW----SLENHLMTQQLSDDI 755
MK ++L N++ C+ KD ++ ++ G++I+W + + H +T +
Sbjct: 54 MKTRRTLKGH---GNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCT--- 107
Query: 756 NASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCNKVFEEKLL---------CLSWA 806
V ++ GC + G + +VY LT N ++K + C
Sbjct: 108 --WVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNE-NMAAKKKSVAMHTNYLSACSFTN 164
Query: 807 GEEKVILGGALGMVYLVDLIQVQLLKQVRAHKDAVLSLHF----DNCTMLVGCWDSCVVI 862
+ +++ G L D+ QLL+ H VL L T + G D ++
Sbjct: 165 SDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMV 224
Query: 863 YDVECGRIVTELAGHEDAISCVAWDEKRKRLISGNLVGAPKLY 905
+D+ G+ V HE ++ V + SG+ +LY
Sbjct: 225 WDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLY 267
Score = 36.2 bits (82), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 46/219 (21%), Positives = 88/219 (40%), Gaps = 18/219 (8%)
Query: 583 ITAVAICGEGISVASVGRDAMLKIHSLKTGRQE------RSAVLSSMTLSSLCILPDNCT 636
+ A A G ++A G D ++ L + E +S + + LS+ +
Sbjct: 109 VMACAYAPSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQ 168
Query: 637 MLVGCWDSCVVIYDVECGRIVTELAGHEDAISC--VAWDEKRKRLISGSWDCTVRVWNTG 694
+L D ++DVE G+++ GH + C +A E +SG D VW+
Sbjct: 169 ILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWD-- 226
Query: 695 ASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGELIIWSLENHLMTQQLS-D 753
M+ + + + ++ + + + A G++ ++ L S +
Sbjct: 227 -----MRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKE 281
Query: 754 DINASVNGVLFSEDGCRVLSCG-NNCMLNVYDLTTGMQV 791
I + V FS G R+L G N+ +NV+D+ G +V
Sbjct: 282 SIIFGASSVDFSLSG-RLLFAGYNDYTINVWDVLKGSRV 319
Score = 30.8 bits (68), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 22/34 (64%)
Query: 660 LAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNT 693
L GH + + C+ W + ++R++S S D V VW++
Sbjct: 60 LKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDS 93
>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex
Length = 408
Score = 39.3 bits (90), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 28/128 (21%), Positives = 51/128 (39%), Gaps = 23/128 (17%)
Query: 578 SHKEAITAVAICGEGISVASVGRDAMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNC-- 635
+H + + +G+ + +VG D +++ + G TL + + +N
Sbjct: 243 AHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGEN---------TLVNYGKVCNNSKK 293
Query: 636 ----TMLVGC--------WDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGS 683
T+ GC + S + +Y V G +T L GH + C + + L SGS
Sbjct: 294 GLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQELYSGS 353
Query: 684 WDCTVRVW 691
DC + W
Sbjct: 354 RDCNILAW 361
Score = 36.2 bits (82), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 56/286 (19%), Positives = 96/286 (33%), Gaps = 89/286 (31%)
Query: 634 NCTMLVGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLI-SGSWDCTVRVWN 692
+C + VG V + D++ G L GH I V+W + ++ + S D V++W+
Sbjct: 156 HCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWD 215
Query: 693 TGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGELIIWSLENHLMTQQLS 752
+ S L++ LD N K A+ N
Sbjct: 216 V------RRASGCLIT-LDQHNGKKSQAVESANTAH------------------------ 244
Query: 753 DDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCNKVFEEKLLCLSWAGEEKVI 812
N VNG+ F+ DG +L+ G + + +++ + G
Sbjct: 245 ---NGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENT--------------------- 280
Query: 813 LGGALGMVYLVDLIQVQLLKQVRAHKDAVLSLHFDNCTMLVGC--------WDSCVVIYD 864
L+ + ++ L F T+ GC + S + +Y
Sbjct: 281 -----------------LVNYGKVCNNSKKGLKF---TVSCGCSSEFVFVPYGSTIAVYT 320
Query: 865 VECGRIVTELAGHEDAISCVAWDEKRKRLISGN-----LVGAPKLY 905
V G +T L GH + C + + L SG+ L P LY
Sbjct: 321 VYSGEQITMLKGHYKTVDCCVFQSNFQELYSGSRDCNILAWVPSLY 366
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 37.4 bits (85), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 30/144 (20%), Positives = 66/144 (45%), Gaps = 11/144 (7%)
Query: 601 DAMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTMLVGCWDSCVVIYDVECGRIVTEL 660
DA K+ ++ G ++ ++++C P+ G D+ ++D+ + +
Sbjct: 216 DASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTY 275
Query: 661 AGHED---AISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIK 717
+ H++ I+ V++ + + L++G D VW+ +K ++ V DNR+
Sbjct: 276 S-HDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDA------LKADRAGV-LAGHDNRVS 327
Query: 718 CLAISKDNNQLAVGTEAGELIIWS 741
CL ++ D +A G+ L IW+
Sbjct: 328 CLGVTDDGMAVATGSWDSFLKIWN 351
Score = 35.8 bits (81), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 25/117 (21%), Positives = 53/117 (45%), Gaps = 2/117 (1%)
Query: 578 SHKEAITAVAICGEGISVASVGRDAMLKIHSLKTGRQERSAVLSSM--TLSSLCILPDNC 635
H+ I A+ G + A+ DA ++ L+ ++ + ++ ++S+
Sbjct: 235 GHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGR 294
Query: 636 TMLVGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWN 692
+L G D ++D LAGH++ +SC+ + + +GSWD +++WN
Sbjct: 295 LLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 351
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 45/199 (22%), Positives = 87/199 (43%), Gaps = 13/199 (6%)
Query: 591 EGISVASVGRDAMLKIHSLKT--GRQERSAVLSSMT-LSSLCILPDNCTMLVGCWDSCVV 647
G VA G D + I++LKT G S L+ T S C D+ ++ D+
Sbjct: 119 SGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCA 178
Query: 648 IYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLV 707
++D+E G+ T GH + ++ + +SG+ D + ++W+ ++
Sbjct: 179 LWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWD-------VREGMCRQ 231
Query: 708 SQLDLDNRIKCLAISKDNNQLAVGTEAGELIIWSL--ENHLMTQQLSDDINASVNGVLFS 765
+ ++ I + + N A G++ ++ L + LMT D+I + V FS
Sbjct: 232 TFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYS-HDNIICGITSVSFS 290
Query: 766 EDGCRVLSCGNNCMLNVYD 784
+ G +L+ ++ NV+D
Sbjct: 291 KSGRLLLAGYDDFNCNVWD 309
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 37.4 bits (85), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 30/144 (20%), Positives = 66/144 (45%), Gaps = 11/144 (7%)
Query: 601 DAMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTMLVGCWDSCVVIYDVECGRIVTEL 660
DA K+ ++ G ++ ++++C P+ G D+ ++D+ + +
Sbjct: 205 DASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTY 264
Query: 661 AGHED---AISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIK 717
+ H++ I+ V++ + + L++G D VW+ +K ++ V DNR+
Sbjct: 265 S-HDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDA------LKADRAGV-LAGHDNRVS 316
Query: 718 CLAISKDNNQLAVGTEAGELIIWS 741
CL ++ D +A G+ L IW+
Sbjct: 317 CLGVTDDGMAVATGSWDSFLKIWN 340
Score = 35.4 bits (80), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 25/117 (21%), Positives = 53/117 (45%), Gaps = 2/117 (1%)
Query: 578 SHKEAITAVAICGEGISVASVGRDAMLKIHSLKTGRQERSAVLSSM--TLSSLCILPDNC 635
H+ I A+ G + A+ DA ++ L+ ++ + ++ ++S+
Sbjct: 224 GHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGR 283
Query: 636 TMLVGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWN 692
+L G D ++D LAGH++ +SC+ + + +GSWD +++WN
Sbjct: 284 LLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 45/199 (22%), Positives = 87/199 (43%), Gaps = 13/199 (6%)
Query: 591 EGISVASVGRDAMLKIHSLKT--GRQERSAVLSSMT-LSSLCILPDNCTMLVGCWDSCVV 647
G VA G D + I++LKT G S L+ T S C D+ ++ D+
Sbjct: 108 SGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCA 167
Query: 648 IYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLV 707
++D+E G+ T GH + ++ + +SG+ D + ++W+ ++
Sbjct: 168 LWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWD-------VREGMCRQ 220
Query: 708 SQLDLDNRIKCLAISKDNNQLAVGTEAGELIIWSL--ENHLMTQQLSDDINASVNGVLFS 765
+ ++ I + + N A G++ ++ L + LMT D+I + V FS
Sbjct: 221 TFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYS-HDNIICGITSVSFS 279
Query: 766 EDGCRVLSCGNNCMLNVYD 784
+ G +L+ ++ NV+D
Sbjct: 280 KSGRLLLAGYDDFNCNVWD 298
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 37.4 bits (85), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 30/144 (20%), Positives = 66/144 (45%), Gaps = 11/144 (7%)
Query: 601 DAMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTMLVGCWDSCVVIYDVECGRIVTEL 660
DA K+ ++ G ++ ++++C P+ G D+ ++D+ + +
Sbjct: 205 DASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTY 264
Query: 661 AGHED---AISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIK 717
+ H++ I+ V++ + + L++G D VW+ +K ++ V DNR+
Sbjct: 265 S-HDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDA------LKADRAGV-LAGHDNRVS 316
Query: 718 CLAISKDNNQLAVGTEAGELIIWS 741
CL ++ D +A G+ L IW+
Sbjct: 317 CLGVTDDGMAVATGSWDSFLKIWN 340
Score = 35.4 bits (80), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 25/117 (21%), Positives = 53/117 (45%), Gaps = 2/117 (1%)
Query: 578 SHKEAITAVAICGEGISVASVGRDAMLKIHSLKTGRQERSAVLSSM--TLSSLCILPDNC 635
H+ I A+ G + A+ DA ++ L+ ++ + ++ ++S+
Sbjct: 224 GHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGR 283
Query: 636 TMLVGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWN 692
+L G D ++D LAGH++ +SC+ + + +GSWD +++WN
Sbjct: 284 LLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 45/199 (22%), Positives = 87/199 (43%), Gaps = 13/199 (6%)
Query: 591 EGISVASVGRDAMLKIHSLKT--GRQERSAVLSSMT-LSSLCILPDNCTMLVGCWDSCVV 647
G VA G D + I++LKT G S L+ T S C D+ ++ D+
Sbjct: 108 SGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCA 167
Query: 648 IYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLV 707
++D+E G+ T GH + ++ + +SG+ D + ++W+ ++
Sbjct: 168 LWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWD-------VREGMCRQ 220
Query: 708 SQLDLDNRIKCLAISKDNNQLAVGTEAGELIIWSL--ENHLMTQQLSDDINASVNGVLFS 765
+ ++ I + + N A G++ ++ L + LMT D+I + V FS
Sbjct: 221 TFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYS-HDNIICGITSVSFS 279
Query: 766 EDGCRVLSCGNNCMLNVYD 784
+ G +L+ ++ NV+D
Sbjct: 280 KSGRLLLAGYDDFNCNVWD 298
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 37.4 bits (85), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 30/144 (20%), Positives = 66/144 (45%), Gaps = 11/144 (7%)
Query: 601 DAMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTMLVGCWDSCVVIYDVECGRIVTEL 660
DA K+ ++ G ++ ++++C P+ G D+ ++D+ + +
Sbjct: 205 DASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTY 264
Query: 661 AGHED---AISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIK 717
+ H++ I+ V++ + + L++G D VW+ +K ++ V DNR+
Sbjct: 265 S-HDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDA------LKADRAGV-LAGHDNRVS 316
Query: 718 CLAISKDNNQLAVGTEAGELIIWS 741
CL ++ D +A G+ L IW+
Sbjct: 317 CLGVTDDGMAVATGSWDSFLKIWN 340
Score = 35.4 bits (80), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 25/117 (21%), Positives = 53/117 (45%), Gaps = 2/117 (1%)
Query: 578 SHKEAITAVAICGEGISVASVGRDAMLKIHSLKTGRQERSAVLSSM--TLSSLCILPDNC 635
H+ I A+ G + A+ DA ++ L+ ++ + ++ ++S+
Sbjct: 224 GHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGR 283
Query: 636 TMLVGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWN 692
+L G D ++D LAGH++ +SC+ + + +GSWD +++WN
Sbjct: 284 LLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 45/199 (22%), Positives = 87/199 (43%), Gaps = 13/199 (6%)
Query: 591 EGISVASVGRDAMLKIHSLKT--GRQERSAVLSSMT-LSSLCILPDNCTMLVGCWDSCVV 647
G VA G D + I++LKT G S L+ T S C D+ ++ D+
Sbjct: 108 SGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCA 167
Query: 648 IYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLV 707
++D+E G+ T GH + ++ + +SG+ D + ++W+ ++
Sbjct: 168 LWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWD-------VREGMCRQ 220
Query: 708 SQLDLDNRIKCLAISKDNNQLAVGTEAGELIIWSL--ENHLMTQQLSDDINASVNGVLFS 765
+ ++ I + + N A G++ ++ L + LMT D+I + V FS
Sbjct: 221 TFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYS-HDNIICGITSVSFS 279
Query: 766 EDGCRVLSCGNNCMLNVYD 784
+ G +L+ ++ NV+D
Sbjct: 280 KSGRLLLAGYDDFNCNVWD 298
>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s
Reg Particle Of The Proteasome
Length = 417
Score = 37.4 bits (85), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 37/179 (20%), Positives = 75/179 (41%), Gaps = 18/179 (10%)
Query: 625 LSSLCILPDNCTMLVGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGSW 684
++ L P ++ D + I+ V+ G L GH ++ +A ++ + ++S S
Sbjct: 139 ITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASL 198
Query: 685 DCTVRVWNTGA-----SWSHMKPSKSLVSQLDL----DNRIKCLAISKDNN--------Q 727
D T+R+W G +++ + V+ + L D ++ ++ SK NN
Sbjct: 199 DGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKY 258
Query: 728 LAVGTEAGELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCG-NNCMLNVYDL 785
+ G +G + + ++ + T QL S N + + + G N ML +DL
Sbjct: 259 VIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDL 317
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 37.4 bits (85), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 30/144 (20%), Positives = 66/144 (45%), Gaps = 11/144 (7%)
Query: 601 DAMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTMLVGCWDSCVVIYDVECGRIVTEL 660
DA K+ ++ G ++ ++++C P+ G D+ ++D+ + +
Sbjct: 205 DASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTY 264
Query: 661 AGHED---AISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIK 717
+ H++ I+ V++ + + L++G D VW+ +K ++ V DNR+
Sbjct: 265 S-HDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDA------LKADRAGV-LAGHDNRVS 316
Query: 718 CLAISKDNNQLAVGTEAGELIIWS 741
CL ++ D +A G+ L IW+
Sbjct: 317 CLGVTDDGMAVATGSWDSFLKIWN 340
Score = 35.4 bits (80), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 25/117 (21%), Positives = 53/117 (45%), Gaps = 2/117 (1%)
Query: 578 SHKEAITAVAICGEGISVASVGRDAMLKIHSLKTGRQERSAVLSSM--TLSSLCILPDNC 635
H+ I A+ G + A+ DA ++ L+ ++ + ++ ++S+
Sbjct: 224 GHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGR 283
Query: 636 TMLVGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWN 692
+L G D ++D LAGH++ +SC+ + + +GSWD +++WN
Sbjct: 284 LLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 45/199 (22%), Positives = 87/199 (43%), Gaps = 13/199 (6%)
Query: 591 EGISVASVGRDAMLKIHSLKT--GRQERSAVLSSMT-LSSLCILPDNCTMLVGCWDSCVV 647
G VA G D + I++LKT G S L+ T S C D+ ++ D+
Sbjct: 108 SGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCA 167
Query: 648 IYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLV 707
++D+E G+ T GH + ++ + +SG+ D + ++W+ ++
Sbjct: 168 LWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWD-------VREGMCRQ 220
Query: 708 SQLDLDNRIKCLAISKDNNQLAVGTEAGELIIWSL--ENHLMTQQLSDDINASVNGVLFS 765
+ ++ I + + N A G++ ++ L + LMT D+I + V FS
Sbjct: 221 TFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYS-HDNIICGITSVSFS 279
Query: 766 EDGCRVLSCGNNCMLNVYD 784
+ G +L+ ++ NV+D
Sbjct: 280 KSGRLLLAGYDDFNCNVWD 298
>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14
pdb|3VL1|B Chain B, Crystal Structure Of Yeast Rpn14
Length = 420
Score = 37.0 bits (84), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 38/179 (21%), Positives = 73/179 (40%), Gaps = 18/179 (10%)
Query: 625 LSSLCILPDNCTMLVGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGSW 684
++ L P ++ D + I+ V+ G L GH ++ +A ++ + ++S S
Sbjct: 142 ITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASL 201
Query: 685 DCTVRVWNTGASWS-HMKPSK--------SLVSQLDLDNRIKCLAISKDNN--------Q 727
D T+R+W G + H K S+ + D ++ ++ SK NN
Sbjct: 202 DGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKY 261
Query: 728 LAVGTEAGELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCG-NNCMLNVYDL 785
+ G +G + + ++ + T QL S N + + + G N ML +DL
Sbjct: 262 VIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDL 320
>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
pdb|3ODT|B Chain B, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
Length = 313
Score = 36.6 bits (83), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 47/199 (23%), Positives = 81/199 (40%), Gaps = 20/199 (10%)
Query: 595 VASVGRDAMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTMLVGCWDSC---VVIYDV 651
VASV RD +++ S L+S+C + +L G D+ V ++
Sbjct: 32 VASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTXINGVPLFAT 91
Query: 652 ECGRIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLD 711
+ L GH+ + +++ + +ISGSWD T +VW G SLV L
Sbjct: 92 SGEDPLYTLIGHQGNVCSLSFQDGV--VISGSWDKTAKVWKEG----------SLVYNLQ 139
Query: 712 LDNRI--KCLAISKDNNQLAVGTEAGELIIWSLENHLMTQQLSDDINASVNGVLFSEDGC 769
N +S N+ + + +W +N + + S N V + +DG
Sbjct: 140 AHNASVWDAKVVSFSENKFLTASADKTIKLW--QNDKVIKTFSGIHNDVVRHLAVVDDG- 196
Query: 770 RVLSCGNNCMLNVYDLTTG 788
+SC N+ ++ + D TG
Sbjct: 197 HFISCSNDGLIKLVDXHTG 215
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 36.2 bits (82), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 41/210 (19%), Positives = 77/210 (36%), Gaps = 31/210 (14%)
Query: 632 PDNCTMLVGCWDSCVVIYDVECGRIVTEL-------AGHEDAISCVAWDEKRKRLISGSW 684
PD D +V+Y+ G H ++ + W ++ S S
Sbjct: 200 PDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASA 259
Query: 685 DCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGELIIWSLEN 744
D T+++WN +K K++ ++++ + +K Q V A I +
Sbjct: 260 DKTIKIWNVAT----LKVEKTIPVGTRIEDQQLGIIWTK---QALVSISANGFINFVNPE 312
Query: 745 HLMTQQLSDDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCNKVFEE------ 798
Q+ N ++ + S DG + S +N +D++TG + N+VF +
Sbjct: 313 LGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTG--ISNRVFPDVHATMI 370
Query: 799 ---------KLLCLSWAGEEKVILGGALGM 819
L +SW KV+ G G+
Sbjct: 371 TGIKTTSKGDLFTVSWDDHLKVVPAGGSGV 400
Score = 35.4 bits (80), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 50/255 (19%), Positives = 105/255 (41%), Gaps = 33/255 (12%)
Query: 577 HSHKEAITAVAICGEGISVASVGRDAMLKIHSLKTGRQERSAVLSSMTLSSLCILPD-NC 635
+ H +AITA++ +G ++ S + + + TG R + PD +
Sbjct: 321 YGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNR-------------VFPDVHA 367
Query: 636 TMLVGC-----WDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRL---ISGSWDCT 687
TM+ G D V +D ++V D+ VA + L +S D
Sbjct: 368 TMITGIKTTSKGDLFTVSWDDHL-KVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIA 426
Query: 688 VRV-WNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGELIIWSLENHL 746
V + A +SH K ++++ + C+A+S D +AVG + ++ ++ L
Sbjct: 427 VAACYKHIAIYSHGK-----LTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGAS 481
Query: 747 MTQQLSDDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCN----KVFEEKLLC 802
+++ + A + V FS +G +++ + + Y + ++ + K+ C
Sbjct: 482 VSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVAC 541
Query: 803 LSWAGEEKVILGGAL 817
+SW+ + + G+L
Sbjct: 542 VSWSPDNVRLATGSL 556
Score = 33.1 bits (74), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 72/339 (21%), Positives = 137/339 (40%), Gaps = 37/339 (10%)
Query: 578 SHKEAITAVAICGEGISVASVGRDAMLKIHSLKTGRQERS-AVLSSMTLSSLCILPDNCT 636
+H ++ + +G +AS D +KI ++ T + E++ V + + L I+
Sbjct: 237 AHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQA 296
Query: 637 MLVGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWN--TG 694
++ + + + E G I GH AI+ ++ K L S + + W+ TG
Sbjct: 297 LVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTG 356
Query: 695 ASWSHMKPS--KSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGELIIWS--LENHLMTQQ 750
S + + P ++++ + ++ +S D+ L V G + S + N L +Q
Sbjct: 357 IS-NRVFPDVHATMITGIKTTSKGDLFTVSWDD-HLKVVPAGGSGVDSSKAVANKLSSQP 414
Query: 751 LSDDINASVNGVLFSEDG-CRVLSCGNNCMLNVYDLTTGMQVCNKVFEEKLLCLSWAGEE 809
L G+ S DG V +C + + + T + + + + LS ++
Sbjct: 415 L---------GLAVSADGDIAVAACYKHIAIYSHGKLTEVPIS---YNSSCVALS-NDKQ 461
Query: 810 KVILGGALGMVYLVDL--IQVQLLKQVRAHKDAVLSLHFDNCTMLVGCWDSC--VVIYDV 865
V +GG V++ L V +K + H + S+ F N + D V+ Y V
Sbjct: 462 FVAVGGQDSKVHVYKLSGASVSEVKTI-VHPAEITSVAFSNNGAFLVATDQSRKVIPYSV 520
Query: 866 ECGRIVTELAG------HEDAISCVAWDEKRKRLISGNL 898
ELA H ++CV+W RL +G+L
Sbjct: 521 ANNF---ELAHTNSWTFHTAKVACVSWSPDNVRLATGSL 556
Score = 32.7 bits (73), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 663 HEDAISCVAWDEKRKRLISGSWDCTVRVWN 692
H ++CV+W RL +GS D +V VWN
Sbjct: 535 HTAKVACVSWSPDNVRLATGSLDNSVIVWN 564
>pdb|1PI6|A Chain A, Yeast Actin Interacting Protein 1 (Aip1), Orthorhombic
Crystal Form
Length = 615
Score = 35.4 bits (80), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 92/486 (18%), Positives = 178/486 (36%), Gaps = 93/486 (19%)
Query: 488 VEAEKADNLFYYLCYEGSVNLDMVQDWNQR-------HALEVQIMEFGQIPKQIFHSPHP 540
V E DN ++ ++ +L V +QR + ++ M G +F+ P
Sbjct: 133 VVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPP 192
Query: 541 ------RRTLTSQSSLLKHS-----------TILSDVSNSWCDKSILEPLHFCHSHKEAI 583
RT Q S ++ T+ SD S D E L + +E +
Sbjct: 193 FKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPV 252
Query: 584 TAVAICG---EGISVASVGRDAMLKIHSLKTGRQERSAVLSSMTLSSL---CILPDNCTM 637
+ A+VG DA +++ + T + + L L + + N +
Sbjct: 253 QGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRI 312
Query: 638 LVGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASW 697
+ D + Y++ ++ ++GH I+ + + LISGS+D + W++ +
Sbjct: 313 ISLSLDGTLNFYELGHDEVLKTISGHNKGITALTVNP----LISGSYDGRIMEWSSSSM- 367
Query: 698 SHMKPSKSLVS----------QLDLDNRIKCLAISKD--NNQLAVGTEAGELIIWSLENH 745
H S +VS + D+ +K I+K +Q V + + L N
Sbjct: 368 -HQDHSNLIVSLDNSKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTND 426
Query: 746 ---LMTQQLSDDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCN--KVFEEKL 800
L+ Q + DI SV R+ S G+ L+ + G++ N +VF+
Sbjct: 427 DDLLILQSFTGDIIKSV----------RLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSD 476
Query: 801 LCLSW----------------AGEEKVILGGALGMVYLVDLIQVQLLKQVRAHKDAVLSL 844
L +S+ E + G +G + L DL ++ A + + ++
Sbjct: 477 LEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINA 536
Query: 845 -------------HFDNCTMLVGCWDSCVVIYDVECG-RIVTELAGHEDAISCVAWDEKR 890
+ + G D+ + IY V+ +I+ L H+D ++ + W+
Sbjct: 537 ISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPS 596
Query: 891 KRLISG 896
+ SG
Sbjct: 597 TLVSSG 602
Score = 30.0 bits (66), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Query: 637 MLVGCWDSCVVIYDVECG-RIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWN 692
+ G D+ + IY V+ +I+ L H+D ++ + W E L+S D ++ WN
Sbjct: 556 VATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLW-ETPSTLVSSGADACIKRWN 611
>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1
Length = 330
Score = 35.4 bits (80), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 53/133 (39%), Gaps = 14/133 (10%)
Query: 570 LEPLHFCHSHKEAITAVAICGEGISVASVGRDAMLKIHSLKTGRQERSAVL----SSMTL 625
++ L H+ + VA +G +A+ RD + I +E + S +
Sbjct: 97 MDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDV 156
Query: 626 SSLCILPDNCTMLVGCWDSCVVIY-----DVECGRIVTELAGHEDAISCVAWDEKRK--R 678
+ P + +D V I+ D EC V L GHE + +D+ R
Sbjct: 157 KHVIWHPSEALLASSSYDDTVRIWKDYDDDWEC---VAVLNGHEGTVWSSDFDKTEGVFR 213
Query: 679 LISGSWDCTVRVW 691
L SGS D TVRVW
Sbjct: 214 LCSGSDDSTVRVW 226
Score = 33.1 bits (74), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 40/94 (42%), Gaps = 14/94 (14%)
Query: 657 VTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDL---- 712
V + H+ AI VAW L +GS+D TV +W + S ++DL
Sbjct: 51 VLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAK-------EESADRTFEMDLLAII 103
Query: 713 ---DNRIKCLAISKDNNQLAVGTEAGELIIWSLE 743
+N +K +A S D LA + + IW +
Sbjct: 104 EGHENEVKGVAWSNDGYYLATCSRDKSVWIWETD 137
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 34.3 bits (77), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 49/191 (25%), Positives = 74/191 (38%), Gaps = 31/191 (16%)
Query: 592 GISVASVGRDAMLKIHSLKTGRQERSAVLSS---MTLSSLCILPDNCTMLVGCWDSCVVI 648
G +AS G D ++I + +VLS T+ + P + +D+ I
Sbjct: 28 GTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCI 87
Query: 649 Y-----DVECGRIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGAS------- 696
+ D EC VT L GHE+ + VAW L + S D +V VW
Sbjct: 88 WKKNQDDFEC---VTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVS 144
Query: 697 --WSHMK--------PSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGELIIWSLENHL 746
SH + PS+ L++ D+ +K +D+ E E +WSL
Sbjct: 145 VLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDP 204
Query: 747 MTQQL---SDD 754
Q+L SDD
Sbjct: 205 SGQRLASCSDD 215
Score = 30.4 bits (67), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 54/118 (45%), Gaps = 5/118 (4%)
Query: 579 HKEAITAVAICGEGISVASVGRDAMLKIHSL-KTGRQERSAVLSSMT--LSSLCILPDNC 635
H+ + +VA G +A+ RD + + + + E +VL+S T + + P
Sbjct: 104 HENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQE 163
Query: 636 TMLVGCWDSCVVIYDVECGRIV--TELAGHEDAISCVAWDEKRKRLISGSWDCTVRVW 691
+ +D V +Y E V L GHE + +A+D +RL S S D TVR+W
Sbjct: 164 LLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIW 221
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC.
pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC
Length = 431
Score = 33.5 bits (75), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 55/257 (21%), Positives = 106/257 (41%), Gaps = 31/257 (12%)
Query: 643 DSCVVIYDVECGRIVTELAGHEDA--ISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHM 700
D+ V ++ G I+ L + IS VAW ++ L G+ V++W+ +
Sbjct: 135 DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWD-------V 187
Query: 701 KPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGELI---IWSLENHLMTQQLSDDINA 757
+ K L + R+ L S ++ L+ G+ +G + + E+H+ T LS +
Sbjct: 188 QQQKRLRNMTSHSARVGSL--SWNSYILSSGSRSGHIHHHDVRVAEHHVAT--LSGH-SQ 242
Query: 758 SVNGVLFSEDGCRVLSCGNNCMLNVYDLTTG------MQVCNKVFEEKLLCLSWAGEEKV 811
V G+ ++ DG + S GN+ ++NV+ G +Q + + + ++W +
Sbjct: 243 EVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQ-HQGAVKAVAWCPWQSN 301
Query: 812 ILGGALGM----VYLVDLIQVQLLKQVRAHKDA---VLSLHFDNCTMLVGCWDSCVVIYD 864
+L G + + ++ L V AH + S H+ G + +VI+
Sbjct: 302 VLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWK 361
Query: 865 VECGRIVTELAGHEDAI 881
V EL GH +
Sbjct: 362 YPTMAKVAELKGHTSRV 378
>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1
Length = 402
Score = 33.1 bits (74), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 33/150 (22%), Positives = 63/150 (42%), Gaps = 8/150 (5%)
Query: 652 ECGRI---VTELAGHEDAISCVAWDEKRKRLI-SGSWDCTVRVWNTGASWSHMKPSKSLV 707
+ GR+ V + GH + +AW +I SGS DCTV VW + + ++
Sbjct: 66 KTGRVDKNVPLVXGHTAPVLDIAWXPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVI 125
Query: 708 SQLDLDNRIKCLA--ISKDNNQLAVGTEAGELIIWSLENHLMTQQLSDDINA-SVNGVLF 764
+ R+ +A + N L+ G + +++W + L D++ ++ V +
Sbjct: 126 TLEGHTKRVGIVAWHPTAQNVLLSAGXD-NVILVWDVGTGAAVLTLGPDVHPDTIYSVDW 184
Query: 765 SEDGCRVLSCGNNCMLNVYDLTTGMQVCNK 794
S DG + + + + V + G V K
Sbjct: 185 SRDGALICTSCRDKRVRVIEPRKGTVVAEK 214
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 420
Score = 33.1 bits (74), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 55/257 (21%), Positives = 106/257 (41%), Gaps = 31/257 (12%)
Query: 643 DSCVVIYDVECGRIVTELAGHEDA--ISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHM 700
D+ V ++ G I+ L + IS VAW ++ L G+ V++W+ +
Sbjct: 124 DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWD-------V 176
Query: 701 KPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGELI---IWSLENHLMTQQLSDDINA 757
+ K L + R+ L S ++ L+ G+ +G + + E+H+ T LS +
Sbjct: 177 QQQKRLRNMTSHSARVGSL--SWNSYILSSGSRSGHIHHHDVRVAEHHVAT--LSGH-SQ 231
Query: 758 SVNGVLFSEDGCRVLSCGNNCMLNVYDLTTG------MQVCNKVFEEKLLCLSWAGEEKV 811
V G+ ++ DG + S GN+ ++NV+ G +Q + + + ++W +
Sbjct: 232 EVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQ-HQGAVKAVAWCPWQSN 290
Query: 812 ILGGALGM----VYLVDLIQVQLLKQVRAHKDA---VLSLHFDNCTMLVGCWDSCVVIYD 864
+L G + + ++ L V AH + S H+ G + +VI+
Sbjct: 291 VLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWK 350
Query: 865 VECGRIVTELAGHEDAI 881
V EL GH +
Sbjct: 351 YPTMAKVAELKGHTSRV 367
>pdb|3MMY|A Chain A, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|C Chain C, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|E Chain E, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|G Chain G, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
Length = 368
Score = 32.7 bits (73), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 27/120 (22%), Positives = 50/120 (41%), Gaps = 13/120 (10%)
Query: 628 LCILPDNCTMLVGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKR--LISGSWD 685
+C D + D ++D+ + + ++A H+ + + W + +++GSWD
Sbjct: 92 VCWSDDGSKVFTASCDKTAKMWDLSSNQAI-QIAQHDAPVKTIHWIKAPNYSCVMTGSWD 150
Query: 686 CTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGELIIWSLENH 745
T++ W+T +S M L L R C + V T LI++ LEN
Sbjct: 151 KTLKFWDTRSSNPMM--------VLQLPERCYCADVIYP--MAVVATAERGLIVYQLENQ 200
>pdb|1PGU|A Chain A, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
pdb|1PGU|B Chain B, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
Length = 615
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 68/351 (19%), Positives = 135/351 (38%), Gaps = 66/351 (18%)
Query: 596 ASVGRDAMLKIHSLKTGRQERSAVLSSMTLSSL---CILPDNCTMLVGCWDSCVVIYDVE 652
A+VG DA +++ + T + + L L + + N ++ D + Y++
Sbjct: 268 ATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYELG 327
Query: 653 CGRIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVS---- 708
++ ++GH I+ + + LISGS+D + W++ + H S +VS
Sbjct: 328 HDEVLKTISGHNKGITALTVNP----LISGSYDGRIXEWSSSSX--HQDHSNLIVSLDNS 381
Query: 709 ------QLDLDNRIKCLAISKD--NNQLAVGTEAGELIIWSLENH---LMTQQLSDDINA 757
+ D+ +K I+K +Q V + + L N L+ Q + DI
Sbjct: 382 KAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIK 441
Query: 758 SVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCN--KVFEEKLLCLSW---------- 805
SV R+ S G+ L+ + G++ N +VF+ L +S+
Sbjct: 442 SV----------RLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKP 491
Query: 806 ------AGEEKVILGGALGMVYLVDLIQVQLLKQVRAHKDAVLSL-------------HF 846
E + G G + L DL ++ A + + ++
Sbjct: 492 SYISISPSETYIAAGDVXGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEI 551
Query: 847 DNCTMLVGCWDSCVVIYDVE-CGRIVTELAGHEDAISCVAWDEKRKRLISG 896
+ + G D+ + IY V+ +I+ L H+D ++ + W+ + SG
Sbjct: 552 EEDLVATGSLDTNIFIYSVKRPXKIIKALNAHKDGVNNLLWETPSTLVSSG 602
Score = 30.4 bits (67), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Query: 637 MLVGCWDSCVVIYDVE-CGRIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWN 692
+ G D+ + IY V+ +I+ L H+D ++ + W E L+S D ++ WN
Sbjct: 556 VATGSLDTNIFIYSVKRPXKIIKALNAHKDGVNNLLW-ETPSTLVSSGADACIKRWN 611
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 60/299 (20%), Positives = 116/299 (38%), Gaps = 38/299 (12%)
Query: 595 VASVGRDAMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTMLVGCWDSCVVIYDVEC- 653
+ S +D L + + T ++ + L + P+ ++ G DS I+++
Sbjct: 81 IVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQ 140
Query: 654 ---------GRIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWN--TGASWSHMK- 701
R++T G+ A SC ++ RLI+GS D T +W+ TG S
Sbjct: 141 ADRDGNMPVSRVLTGHKGY--ASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGS 198
Query: 702 --PSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGELIIWSLENHLMTQQLSDDINASV 759
PS L L S + N G+ + +W L + +
Sbjct: 199 EFPSGHTADVLSLSIN------SLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDI 252
Query: 760 NGVLFSEDGCRVLSCGNNCMLNVYDLTTG--MQVCNKVFEEK------LLCLSWAGEEKV 811
N V F DG R + ++ ++D+ TG +QV N+ + + ++++ ++
Sbjct: 253 NSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRL 312
Query: 812 ILGG-ALGMVYLVDLIQVQL------LKQVRAHKDAVLSLHFDNCTMLVGCWDSCVVIY 863
+ G + G Y+ D + ++ L+ + + L L D + G WD + I+
Sbjct: 313 LFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIW 371
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 27/126 (21%), Positives = 48/126 (38%), Gaps = 11/126 (8%)
Query: 577 HSHKEAITAVAICGEGISVASVGRDAMLKIHSLKTGRQ----ERSAVLSSMTL---SSLC 629
H H+ I +V +G + D ++ ++TG Q R + L +S+
Sbjct: 246 HGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVA 305
Query: 630 ILPDNCTMLVGCWDSCVVIYDVECGRIVTELA----GHEDAISCVAWDEKRKRLISGSWD 685
+ G + ++D +V L HE ISC+ L +GSWD
Sbjct: 306 FSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWD 365
Query: 686 CTVRVW 691
+++W
Sbjct: 366 KNLKIW 371
Score = 30.4 bits (67), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 713 DNRIKCLAISKDNNQLAVGTEAGELIIWSLENH 745
+ RI CL +S D + L G+ L IW+ H
Sbjct: 344 EGRISCLGLSSDGSALCTGSWDKNLKIWAFSGH 376
>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 318
Score = 30.8 bits (68), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 55/257 (21%), Positives = 106/257 (41%), Gaps = 31/257 (12%)
Query: 643 DSCVVIYDVECGRIVTELAGHEDA--ISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHM 700
D+ V ++ G I+ L + IS VAW ++ L G+ V++W+ +
Sbjct: 44 DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWD-------V 96
Query: 701 KPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGELI---IWSLENHLMTQQLSDDINA 757
+ K L + R+ L S ++ L+ G+ +G + + E+H+ T LS +
Sbjct: 97 QQQKRLRNMTSHSARVGSL--SWNSYILSSGSRSGHIHHHDVRVAEHHVAT--LSGH-SQ 151
Query: 758 SVNGVLFSEDGCRVLSCGNNCMLNVYDLTTG------MQVCNKVFEEKLLCLSWAGEEKV 811
V G+ ++ DG + S GN+ ++NV+ G +Q + + + ++W +
Sbjct: 152 EVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQ-HQGAVKAVAWCPWQSN 210
Query: 812 ILGGALGM----VYLVDLIQVQLLKQVRAHKDA---VLSLHFDNCTMLVGCWDSCVVIYD 864
+L G + + ++ L V AH + S H+ G + +VI+
Sbjct: 211 VLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWK 270
Query: 865 VECGRIVTELAGHEDAI 881
V EL GH +
Sbjct: 271 YPTMAKVAELKGHTSRV 287
>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form
Length = 402
Score = 30.8 bits (68), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 33/148 (22%), Positives = 62/148 (41%), Gaps = 8/148 (5%)
Query: 654 GRI---VTELAGHEDAISCVAWDEKRKRLI-SGSWDCTVRVWNTGASWSHMKPSKSLVSQ 709
GR+ V + GH + +AW +I SGS DCTV VW + + +++
Sbjct: 68 GRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITL 127
Query: 710 LDLDNRIKCLA--ISKDNNQLAVGTEAGELIIWSLENHLMTQQLSDDINA-SVNGVLFSE 766
R+ +A + N L+ G + +++W + L D++ ++ V +S
Sbjct: 128 EGHTKRVGIVAWHPTAQNVLLSAGCD-NVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSR 186
Query: 767 DGCRVLSCGNNCMLNVYDLTTGMQVCNK 794
DG + + + + V + G V K
Sbjct: 187 DGALICTSCRDKRVRVIEPRKGTVVAEK 214
>pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex
Length = 344
Score = 29.6 bits (65), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 21/89 (23%), Positives = 41/89 (46%), Gaps = 6/89 (6%)
Query: 803 LSWAGEEKVILGGALGMVYLVDLIQVQLLKQVR----AHKDAV--LSLHFDNCTMLVGCW 856
L+W GE +++ G V L +L + + L + H D V +S+ + G
Sbjct: 88 LTWVGERGILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSK 147
Query: 857 DSCVVIYDVECGRIVTELAGHEDAISCVA 885
D C+ ++D+ +++ H ++CVA
Sbjct: 148 DICIKVWDLAQQVVLSSYRAHAAQVTCVA 176
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.420
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,491,036
Number of Sequences: 62578
Number of extensions: 1150612
Number of successful extensions: 3275
Number of sequences better than 100.0: 78
Number of HSP's better than 100.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 2611
Number of HSP's gapped (non-prelim): 320
length of query: 917
length of database: 14,973,337
effective HSP length: 108
effective length of query: 809
effective length of database: 8,214,913
effective search space: 6645864617
effective search space used: 6645864617
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (26.2 bits)