Query psy3053
Match_columns 917
No_of_seqs 1392 out of 2900
Neff 8.0
Searched_HMMs 29240
Date Sat Aug 17 00:31:09 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3053.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/3053hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1t77_A Lipopolysaccharide-resp 100.0 6E-125 2E-129 1032.1 29.3 380 157-542 2-414 (414)
2 1nr0_A Actin interacting prote 100.0 2.6E-41 8.9E-46 407.8 48.7 346 562-909 42-567 (611)
3 1nr0_A Actin interacting prote 100.0 2.7E-41 9.1E-46 407.7 43.6 343 562-908 132-610 (611)
4 1vyh_C Platelet-activating fac 100.0 2E-41 6.7E-46 388.5 37.4 307 573-907 101-409 (410)
5 1got_B GT-beta; complex (GTP-b 100.0 5.1E-40 1.7E-44 366.6 44.9 290 570-906 45-340 (340)
6 2ymu_A WD-40 repeat protein; u 100.0 1E-39 3.5E-44 388.8 49.4 329 562-906 246-577 (577)
7 2ymu_A WD-40 repeat protein; u 100.0 2.6E-39 8.8E-44 385.3 51.3 338 562-916 205-546 (577)
8 3ow8_A WD repeat-containing pr 100.0 8E-40 2.7E-44 362.6 42.6 288 573-908 25-320 (321)
9 1r5m_A SIR4-interacting protei 100.0 1.5E-39 5.1E-44 369.3 42.4 324 576-909 41-425 (425)
10 2ynn_A Coatomer subunit beta'; 100.0 2.5E-39 8.4E-44 355.2 42.0 293 570-909 3-302 (304)
11 2pbi_B Guanine nucleotide-bind 100.0 6.2E-39 2.1E-43 360.3 44.0 290 571-906 55-354 (354)
12 4ery_A WD repeat-containing pr 100.0 9.9E-39 3.4E-43 350.4 43.6 291 571-908 14-311 (312)
13 3frx_A Guanine nucleotide-bind 100.0 1.6E-38 5.6E-43 351.3 44.1 299 570-909 7-317 (319)
14 3iz6_a 40S ribosomal protein R 100.0 4.5E-39 1.6E-43 364.8 34.8 306 569-910 55-376 (380)
15 3fm0_A Protein CIAO1; WDR39,SG 100.0 2.2E-38 7.6E-43 354.3 39.3 312 569-910 4-336 (345)
16 1gxr_A ESG1, transducin-like e 100.0 6.5E-38 2.2E-42 344.6 42.3 322 578-908 7-336 (337)
17 2ovr_B FBW7, F-BOX/WD repeat p 100.0 4E-37 1.4E-41 355.4 48.9 322 571-910 109-443 (445)
18 1erj_A Transcriptional repress 100.0 1.7E-37 5.8E-42 353.5 42.6 296 578-910 62-390 (393)
19 2xzm_R RACK1; ribosome, transl 100.0 3E-37 1E-41 344.4 38.5 292 571-869 12-342 (343)
20 4gqb_B Methylosome protein 50; 100.0 3.8E-37 1.3E-41 344.8 38.9 285 577-911 27-333 (344)
21 2pm9_A Protein WEB1, protein t 100.0 8E-39 2.7E-43 363.9 24.9 331 580-910 12-415 (416)
22 3vl1_A 26S proteasome regulato 100.0 4.6E-37 1.6E-41 350.5 39.3 321 581-909 57-419 (420)
23 4aow_A Guanine nucleotide-bind 100.0 2.2E-36 7.4E-41 333.7 43.4 293 570-869 28-339 (340)
24 3v7d_B Cell division control p 100.0 4.9E-36 1.7E-40 347.5 48.1 337 563-908 104-462 (464)
25 4g56_B MGC81050 protein; prote 100.0 2.2E-37 7.4E-42 348.3 34.5 314 585-909 10-343 (357)
26 3sfz_A APAF-1, apoptotic pepti 100.0 2.2E-37 7.5E-42 402.7 38.2 347 562-910 640-1159(1249)
27 2hes_X YDR267CP; beta-propelle 100.0 2.4E-36 8.2E-41 335.6 40.9 292 570-867 4-328 (330)
28 1pgu_A Actin interacting prote 100.0 1.2E-35 4.1E-40 355.2 47.5 339 562-910 42-573 (615)
29 3zwl_B Eukaryotic translation 100.0 1.4E-35 4.8E-40 329.9 44.5 310 573-910 25-347 (369)
30 2hes_X YDR267CP; beta-propelle 100.0 1.7E-35 5.8E-40 328.7 42.0 295 612-909 4-328 (330)
31 3dm0_A Maltose-binding peripla 100.0 8.8E-36 3E-40 364.7 42.2 314 570-909 372-693 (694)
32 2oaj_A Protein SNI1; WD40 repe 100.0 1.2E-35 4.1E-40 373.3 44.0 213 576-792 13-247 (902)
33 1pgu_A Actin interacting prote 100.0 2.2E-35 7.6E-40 352.9 44.1 317 577-908 15-365 (615)
34 3sfz_A APAF-1, apoptotic pepti 100.0 1.3E-35 4.5E-40 386.0 44.7 332 573-911 608-1036(1249)
35 3mkq_A Coatomer beta'-subunit; 100.0 2.1E-35 7.2E-40 366.4 44.3 335 570-911 3-388 (814)
36 1sq9_A Antiviral protein SKI8; 100.0 6.4E-35 2.2E-39 329.8 40.1 307 571-910 7-396 (397)
37 4g56_B MGC81050 protein; prote 100.0 1.6E-35 5.5E-40 333.0 34.5 287 575-870 37-346 (357)
38 2xzm_R RACK1; ribosome, transl 100.0 1.5E-34 5.1E-39 322.6 39.9 287 614-910 13-341 (343)
39 4aow_A Guanine nucleotide-bind 100.0 7.4E-34 2.5E-38 313.4 44.2 292 610-910 26-338 (340)
40 1k8k_C P40, ARP2/3 complex 41 100.0 5.3E-35 1.8E-39 326.8 35.0 318 575-909 3-361 (372)
41 3gre_A Serine/threonine-protei 100.0 3.2E-35 1.1E-39 338.0 33.6 327 563-906 47-437 (437)
42 3odt_A Protein DOA1; ubiquitin 100.0 8.6E-34 2.9E-38 308.7 42.4 284 613-910 9-297 (313)
43 3k26_A Polycomb protein EED; W 100.0 1.5E-35 5.1E-40 329.7 28.0 312 575-908 13-365 (366)
44 3odt_A Protein DOA1; ubiquitin 100.0 7E-34 2.4E-38 309.4 40.2 292 567-874 5-303 (313)
45 2ynn_A Coatomer subunit beta'; 100.0 4.4E-34 1.5E-38 313.4 38.6 256 613-915 4-266 (304)
46 2oaj_A Protein SNI1; WD40 repe 100.0 2.5E-34 8.5E-39 361.3 39.7 342 562-907 82-659 (902)
47 1gxr_A ESG1, transducin-like e 100.0 2.7E-33 9.2E-38 307.7 42.6 292 563-866 35-336 (337)
48 3ei3_B DNA damage-binding prot 100.0 2.9E-34 9.9E-39 324.0 35.1 292 608-909 59-382 (383)
49 4a11_B DNA excision repair pro 100.0 1.5E-33 5E-38 318.5 38.2 328 571-909 34-405 (408)
50 3i2n_A WD repeat-containing pr 100.0 1.3E-33 4.6E-38 313.1 35.5 287 617-910 13-354 (357)
51 3ei3_B DNA damage-binding prot 100.0 2E-33 6.9E-38 317.1 35.6 286 569-867 62-382 (383)
52 3mkq_A Coatomer beta'-subunit; 100.0 7.6E-33 2.6E-37 343.4 43.2 331 562-906 38-420 (814)
53 4aez_A CDC20, WD repeat-contai 100.0 7.6E-33 2.6E-37 315.5 39.2 287 576-910 87-381 (401)
54 1vyh_C Platelet-activating fac 100.0 3.8E-33 1.3E-37 319.6 35.9 255 562-825 133-409 (410)
55 3ow8_A WD repeat-containing pr 100.0 6.8E-33 2.3E-37 306.9 36.7 258 561-826 60-320 (321)
56 1r5m_A SIR4-interacting protei 100.0 9.8E-33 3.3E-37 313.1 38.8 297 603-910 26-362 (425)
57 2j04_B YDR362CP, TAU91; beta p 100.0 1.4E-34 4.8E-39 341.5 24.4 312 588-911 169-519 (524)
58 3i2n_A WD repeat-containing pr 100.0 3E-33 1E-37 310.3 33.3 289 574-870 12-356 (357)
59 3dwl_C Actin-related protein 2 100.0 1.8E-34 6E-39 324.5 23.5 321 574-907 5-377 (377)
60 4gqb_B Methylosome protein 50; 100.0 1.1E-32 3.9E-37 308.4 36.6 247 576-829 78-333 (344)
61 4gga_A P55CDC, cell division c 100.0 3.4E-32 1.2E-36 312.2 40.8 277 582-908 107-394 (420)
62 4e54_B DNA damage-binding prot 100.0 1.1E-33 3.7E-38 326.3 27.6 302 572-910 111-431 (435)
63 4a11_B DNA excision repair pro 100.0 5.9E-33 2E-37 313.6 32.8 302 600-910 21-366 (408)
64 4h5i_A Guanine nucleotide-exch 100.0 1.3E-32 4.4E-37 310.4 34.5 282 580-908 14-342 (365)
65 4ggc_A P55CDC, cell division c 100.0 1.1E-31 3.9E-36 292.9 40.7 277 583-909 28-315 (318)
66 2pm9_A Protein WEB1, protein t 100.0 1.5E-33 5.1E-38 320.3 25.9 283 624-910 14-338 (416)
67 3f3f_A Nucleoporin SEH1; struc 100.0 3.7E-32 1.3E-36 298.4 36.1 307 573-915 4-344 (351)
68 1p22_A F-BOX/WD-repeat protein 100.0 2.9E-32 9.9E-37 314.1 36.1 298 573-887 126-433 (435)
69 2ovr_B FBW7, F-BOX/WD repeat p 100.0 3.3E-31 1.1E-35 305.8 43.1 284 614-915 110-398 (445)
70 1p22_A F-BOX/WD-repeat protein 100.0 8.3E-32 2.8E-36 310.3 37.4 271 621-910 132-415 (435)
71 1got_B GT-beta; complex (GTP-b 100.0 3.2E-31 1.1E-35 295.4 40.6 257 613-914 46-307 (340)
72 3vl1_A 26S proteasome regulato 100.0 3.4E-32 1.1E-36 310.2 33.5 297 562-867 81-419 (420)
73 3v7d_B Cell division control p 100.0 5E-31 1.7E-35 305.4 43.7 281 615-910 114-422 (464)
74 1yfq_A Cell cycle arrest prote 100.0 9.3E-32 3.2E-36 297.1 34.5 297 573-906 4-321 (342)
75 3dw8_B Serine/threonine-protei 100.0 6.3E-32 2.1E-36 310.3 31.7 318 578-908 26-445 (447)
76 2pm7_B Protein transport prote 100.0 3.1E-31 1E-35 289.7 33.4 247 574-826 3-284 (297)
77 3mmy_A MRNA export factor; mRN 100.0 3.6E-31 1.2E-35 294.1 34.2 289 607-907 24-344 (368)
78 3iz6_a 40S ribosomal protein R 100.0 6.1E-32 2.1E-36 306.1 27.8 266 605-909 49-329 (380)
79 2pbi_B Guanine nucleotide-bind 100.0 2.7E-30 9.1E-35 290.0 40.3 261 613-915 55-322 (354)
80 3frx_A Guanine nucleotide-bind 100.0 2.1E-30 7.2E-35 286.2 38.5 251 655-910 8-268 (319)
81 3fm0_A Protein CIAO1; WDR39,SG 100.0 5E-31 1.7E-35 294.6 33.5 269 561-834 40-342 (345)
82 2pm7_B Protein transport prote 100.0 1.2E-30 4.2E-35 285.0 35.1 245 658-908 3-284 (297)
83 4ery_A WD repeat-containing pr 100.0 6.3E-30 2.1E-34 280.2 39.6 256 613-915 14-275 (312)
84 3jrp_A Fusion protein of prote 100.0 2.4E-30 8.3E-35 289.0 35.0 252 572-829 3-289 (379)
85 1erj_A Transcriptional repress 100.0 4.5E-30 1.5E-34 292.2 35.7 243 581-825 124-387 (393)
86 3bg1_A Protein SEC13 homolog; 100.0 5.2E-31 1.8E-35 290.7 26.5 248 574-826 7-292 (316)
87 3bg1_A Protein SEC13 homolog; 100.0 9.3E-31 3.2E-35 288.7 26.8 264 617-908 8-292 (316)
88 3mmy_A MRNA export factor; mRN 100.0 1.2E-29 4.3E-34 281.7 34.8 286 568-864 27-343 (368)
89 3bws_A Protein LP49; two-domai 100.0 1.2E-28 4.2E-33 282.2 43.3 318 580-909 60-432 (433)
90 3jrp_A Fusion protein of prote 100.0 9.7E-30 3.3E-34 284.1 32.9 255 612-908 1-286 (379)
91 2j04_B YDR362CP, TAU91; beta p 100.0 7.2E-31 2.5E-35 309.8 24.4 294 562-867 186-517 (524)
92 2aq5_A Coronin-1A; WD40 repeat 100.0 5E-30 1.7E-34 291.9 30.0 284 583-914 37-347 (402)
93 2j04_A TAU60, YPL007P, hypothe 100.0 1.5E-30 5.2E-35 301.7 25.2 291 577-898 12-350 (588)
94 1sq9_A Antiviral protein SKI8; 100.0 3.5E-29 1.2E-33 282.7 33.2 258 562-828 39-396 (397)
95 2vdu_B TRNA (guanine-N(7)-)-me 100.0 2.4E-28 8.3E-33 282.8 39.9 304 580-908 4-390 (450)
96 3gre_A Serine/threonine-protei 100.0 1.8E-29 6.1E-34 290.0 28.9 302 587-896 34-391 (437)
97 1k8k_C P40, ARP2/3 complex 41 100.0 8.3E-29 2.9E-33 276.4 33.3 262 618-909 4-274 (372)
98 3zwl_B Eukaryotic translation 100.0 2.8E-28 9.6E-33 270.9 36.0 273 562-870 57-349 (369)
99 1l0q_A Surface layer protein; 100.0 2.6E-27 8.7E-32 267.4 42.9 304 593-909 3-342 (391)
100 4gga_A P55CDC, cell division c 100.0 3.5E-28 1.2E-32 278.8 35.4 277 558-882 124-410 (420)
101 3dwl_C Actin-related protein 2 100.0 8.6E-30 2.9E-34 286.2 21.5 261 618-908 7-280 (377)
102 2xyi_A Probable histone-bindin 100.0 3.7E-28 1.3E-32 279.8 34.5 255 616-910 122-411 (430)
103 3dm0_A Maltose-binding peripla 100.0 6.2E-28 2.1E-32 295.1 38.2 248 658-910 376-633 (694)
104 2j04_A TAU60, YPL007P, hypothe 100.0 6.5E-29 2.2E-33 288.0 27.0 260 622-909 15-297 (588)
105 4aez_A CDC20, WD repeat-contai 100.0 9.5E-28 3.2E-32 273.3 36.2 261 562-834 116-387 (401)
106 3jro_A Fusion protein of prote 100.0 2.5E-29 8.5E-34 310.5 23.5 250 573-828 2-286 (753)
107 3k26_A Polycomb protein EED; W 100.0 2.6E-28 8.9E-33 271.1 28.2 261 562-826 47-365 (366)
108 3vu4_A KMHSV2; beta-propeller 100.0 2.3E-27 7.7E-32 266.2 35.4 301 571-909 10-336 (355)
109 1yfq_A Cell cycle arrest prote 100.0 4.8E-28 1.7E-32 267.3 28.3 248 659-914 6-288 (342)
110 4gq1_A NUP37; propeller, trans 100.0 2.8E-28 9.7E-33 277.5 26.0 253 628-910 95-390 (393)
111 3lrv_A PRE-mRNA-splicing facto 100.0 5.2E-28 1.8E-32 269.5 27.4 279 586-914 42-338 (343)
112 2aq5_A Coronin-1A; WD40 repeat 100.0 7.4E-28 2.5E-32 273.9 28.5 261 562-830 60-345 (402)
113 3bws_A Protein LP49; two-domai 100.0 2.1E-26 7.3E-31 263.5 39.3 285 571-867 114-432 (433)
114 3dw8_B Serine/threonine-protei 100.0 1.9E-27 6.5E-32 272.9 29.6 256 621-879 27-384 (447)
115 2w18_A PALB2, fancn, partner a 100.0 1.7E-26 5.9E-31 252.7 35.0 289 570-908 25-356 (356)
116 4e54_B DNA damage-binding prot 100.0 1.3E-27 4.3E-32 275.6 26.5 264 561-830 144-433 (435)
117 1l0q_A Surface layer protein; 100.0 1.5E-25 5.2E-30 252.8 42.1 268 635-915 3-282 (391)
118 4ggc_A P55CDC, cell division c 100.0 3.3E-26 1.1E-30 249.5 33.7 261 560-868 46-316 (318)
119 2xyi_A Probable histone-bindin 100.0 1.7E-26 5.8E-31 265.8 32.9 249 574-827 122-410 (430)
120 3jro_A Fusion protein of prote 100.0 2.3E-27 8E-32 292.9 26.1 247 657-909 2-285 (753)
121 1nir_A Nitrite reductase; hemo 99.9 4.8E-25 1.6E-29 261.7 38.0 322 587-915 144-521 (543)
122 4h5i_A Guanine nucleotide-exch 99.9 6.1E-26 2.1E-30 255.7 27.1 207 577-788 130-344 (365)
123 2vdu_B TRNA (guanine-N(7)-)-me 99.9 3E-25 1E-29 256.7 33.5 243 575-825 97-389 (450)
124 3vu4_A KMHSV2; beta-propeller 99.9 1.1E-25 3.7E-30 252.5 27.3 244 648-909 3-271 (355)
125 3lrv_A PRE-mRNA-splicing facto 99.9 4.1E-26 1.4E-30 254.0 20.6 234 630-909 44-292 (343)
126 4gq1_A NUP37; propeller, trans 99.9 9.9E-26 3.4E-30 256.5 22.0 266 576-865 85-387 (393)
127 2ecf_A Dipeptidyl peptidase IV 99.9 1.7E-24 5.7E-29 266.1 34.1 322 580-913 36-463 (741)
128 3f3f_A Nucleoporin SEH1; struc 99.9 7.4E-25 2.5E-29 240.1 27.3 224 562-791 36-341 (351)
129 2hqs_A Protein TOLB; TOLB, PAL 99.9 3.3E-24 1.1E-28 245.9 30.4 296 581-890 63-409 (415)
130 2w18_A PALB2, fancn, partner a 99.9 1.3E-23 4.5E-28 229.9 30.3 257 562-865 66-355 (356)
131 1k32_A Tricorn protease; prote 99.9 1.6E-23 5.3E-28 268.0 35.3 337 563-915 37-467 (1045)
132 2hqs_A Protein TOLB; TOLB, PAL 99.9 9E-23 3.1E-27 234.0 27.4 280 623-915 63-393 (415)
133 2z3z_A Dipeptidyl aminopeptida 99.9 6.8E-22 2.3E-26 241.6 35.9 319 583-911 28-437 (706)
134 1nir_A Nitrite reductase; hemo 99.9 6.1E-22 2.1E-26 234.9 31.7 272 630-910 145-459 (543)
135 1k32_A Tricorn protease; prote 99.9 1.5E-21 5.3E-26 249.5 35.9 337 562-908 83-501 (1045)
136 1xfd_A DIP, dipeptidyl aminope 99.9 1.1E-22 3.8E-27 249.0 24.2 307 582-897 18-428 (723)
137 3u4y_A Uncharacterized protein 99.9 1.1E-20 3.9E-25 207.7 33.7 280 587-877 4-313 (331)
138 3vgz_A Uncharacterized protein 99.9 7E-20 2.4E-24 202.7 39.6 270 580-899 40-334 (353)
139 3u4y_A Uncharacterized protein 99.9 3.2E-20 1.1E-24 204.1 33.3 277 629-914 4-309 (331)
140 1ri6_A Putative isomerase YBHE 99.9 5.6E-20 1.9E-24 202.1 34.2 289 595-891 8-335 (343)
141 2ecf_A Dipeptidyl peptidase IV 99.9 9.5E-21 3.2E-25 232.7 30.9 277 622-908 36-412 (741)
142 1ri6_A Putative isomerase YBHE 99.9 8E-20 2.7E-24 200.8 33.6 265 636-908 7-307 (343)
143 1pby_B Quinohemoprotein amine 99.9 3.3E-20 1.1E-24 203.4 29.7 268 635-916 2-318 (337)
144 1pby_B Quinohemoprotein amine 99.9 8.7E-20 3E-24 200.0 31.4 272 593-878 2-321 (337)
145 2ojh_A Uncharacterized protein 99.9 3.4E-20 1.2E-24 198.3 24.3 250 639-900 17-293 (297)
146 2z3z_A Dipeptidyl aminopeptida 99.9 1.6E-19 5.5E-24 220.5 32.3 293 581-886 82-452 (706)
147 1xfd_A DIP, dipeptidyl aminope 99.8 1.6E-20 5.6E-25 229.7 22.4 276 625-908 19-392 (723)
148 1z68_A Fibroblast activation p 99.8 6E-20 2.1E-24 224.9 25.4 320 585-910 20-444 (719)
149 2ojh_A Uncharacterized protein 99.8 3.5E-19 1.2E-23 190.4 24.4 250 598-858 18-293 (297)
150 3hfq_A Uncharacterized protein 99.8 1.3E-17 4.4E-22 185.0 37.8 271 601-908 15-316 (347)
151 3pe7_A Oligogalacturonate lyas 99.8 2.6E-18 8.8E-23 193.2 31.8 302 564-908 14-381 (388)
152 1jmx_B Amine dehydrogenase; ox 99.8 2E-18 6.9E-23 190.3 29.9 275 627-916 4-333 (349)
153 3o4h_A Acylamino-acid-releasin 99.8 9.3E-19 3.2E-23 209.1 29.2 269 621-909 20-315 (582)
154 1jmx_B Amine dehydrogenase; ox 99.8 2.8E-18 9.5E-23 189.2 30.5 285 584-877 3-335 (349)
155 3o4h_A Acylamino-acid-releasin 99.8 9.2E-19 3.1E-23 209.1 22.7 267 579-867 20-315 (582)
156 4a5s_A Dipeptidyl peptidase 4 99.8 2.4E-17 8.2E-22 203.0 35.3 324 582-910 18-450 (740)
157 3scy_A Hypothetical bacterial 99.8 1.8E-16 6.1E-21 176.9 37.1 293 591-887 12-360 (361)
158 3vgz_A Uncharacterized protein 99.8 1.1E-16 3.9E-21 176.7 33.2 247 562-817 72-334 (353)
159 2oit_A Nucleoporin 214KDA; NH2 99.8 5.6E-18 1.9E-22 195.3 21.2 200 580-788 36-279 (434)
160 3hfq_A Uncharacterized protein 99.8 1.2E-16 4E-21 177.3 30.8 250 577-831 36-323 (347)
161 3azo_A Aminopeptidase; POP fam 99.8 3.3E-17 1.1E-21 198.5 28.4 301 574-878 17-380 (662)
162 2oit_A Nucleoporin 214KDA; NH2 99.8 5.5E-17 1.9E-21 187.0 28.9 217 602-828 23-279 (434)
163 1z68_A Fibroblast activation p 99.8 3.5E-18 1.2E-22 209.2 19.5 270 627-908 20-390 (719)
164 3scy_A Hypothetical bacterial 99.8 4.7E-16 1.6E-20 173.5 34.1 269 634-908 13-336 (361)
165 2oiz_A Aromatic amine dehydrog 99.8 8.6E-16 2.9E-20 172.5 33.4 286 591-891 14-360 (361)
166 3c5m_A Oligogalacturonate lyas 99.7 1.5E-16 5.1E-21 178.8 23.9 277 582-870 37-387 (396)
167 1jof_A Carboxy-CIS,CIS-muconat 99.7 4E-16 1.4E-20 175.0 27.2 271 636-913 4-345 (365)
168 3c5m_A Oligogalacturonate lyas 99.7 3.2E-16 1.1E-20 176.0 22.6 291 606-907 14-380 (396)
169 1jof_A Carboxy-CIS,CIS-muconat 99.7 1.2E-14 4.3E-19 162.8 32.4 270 595-869 5-343 (365)
170 2oiz_A Aromatic amine dehydrog 99.7 1.3E-14 4.4E-19 162.9 29.9 266 633-910 14-335 (361)
171 1qks_A Cytochrome CD1 nitrite 99.7 1.6E-13 5.5E-18 162.7 40.4 317 590-912 165-541 (567)
172 4a5s_A Dipeptidyl peptidase 4 99.7 2.8E-15 9.7E-20 184.4 25.7 271 625-908 19-397 (740)
173 1q7f_A NHL, brain tumor CG1071 99.7 8.7E-14 3E-18 149.7 33.4 240 577-828 26-281 (286)
174 3azo_A Aminopeptidase; POP fam 99.7 2E-14 6.7E-19 174.0 30.3 288 617-915 18-375 (662)
175 2gop_A Trilobed protease; beta 99.7 7E-14 2.4E-18 154.5 31.5 252 625-908 17-330 (347)
176 3fvz_A Peptidyl-glycine alpha- 99.7 6.6E-14 2.3E-18 154.7 31.2 254 623-910 24-323 (329)
177 2gop_A Trilobed protease; beta 99.6 6.5E-14 2.2E-18 154.7 30.8 266 581-879 15-341 (347)
178 2dg1_A DRP35, lactonase; beta 99.6 5.2E-14 1.8E-18 154.8 29.8 266 623-900 6-301 (333)
179 3pe7_A Oligogalacturonate lyas 99.6 1.9E-14 6.3E-19 161.6 25.1 263 606-916 14-336 (388)
180 1q7f_A NHL, brain tumor CG1071 99.6 3.5E-13 1.2E-17 144.9 32.2 242 661-909 26-280 (286)
181 2dg1_A DRP35, lactonase; beta 99.6 1.4E-13 4.8E-18 151.4 28.0 267 581-858 6-301 (333)
182 3fvz_A Peptidyl-glycine alpha- 99.6 2.4E-13 8.3E-18 150.2 29.1 238 580-826 23-321 (329)
183 2z2n_A Virginiamycin B lyase; 99.6 5.7E-12 1.9E-16 135.3 38.4 279 577-869 11-297 (299)
184 2bkl_A Prolyl endopeptidase; m 99.6 8.2E-14 2.8E-18 170.1 26.1 246 662-915 118-403 (695)
185 3dsm_A Uncharacterized protein 99.6 5.8E-13 2E-17 147.2 30.3 262 642-916 15-309 (328)
186 3e5z_A Putative gluconolactona 99.6 7.5E-13 2.6E-17 143.3 27.9 241 574-830 21-289 (296)
187 2z2n_A Virginiamycin B lyase; 99.6 1.8E-11 6.3E-16 131.3 38.2 276 621-910 13-296 (299)
188 2xdw_A Prolyl endopeptidase; a 99.6 1.8E-12 6.2E-17 158.6 34.0 241 623-869 125-416 (710)
189 2xdw_A Prolyl endopeptidase; a 99.5 8.8E-13 3E-17 161.4 29.7 240 663-911 123-416 (710)
190 2bkl_A Prolyl endopeptidase; m 99.5 3.2E-13 1.1E-17 164.9 24.4 273 589-870 76-400 (695)
191 3e5z_A Putative gluconolactona 99.5 3E-12 1E-16 138.6 27.6 240 617-870 22-289 (296)
192 3dsm_A Uncharacterized protein 99.5 2.7E-12 9.2E-17 141.8 27.1 269 600-886 15-319 (328)
193 1qks_A Cytochrome CD1 nitrite 99.5 3E-11 1E-15 143.2 37.2 270 632-910 165-478 (567)
194 3q7m_A Lipoprotein YFGL, BAMB; 99.5 2.1E-11 7.3E-16 136.7 33.5 299 591-906 52-375 (376)
195 3no2_A Uncharacterized protein 99.5 4E-12 1.4E-16 137.1 26.1 218 590-816 3-231 (276)
196 1yr2_A Prolyl oligopeptidase; 99.5 4.5E-12 1.6E-16 155.9 28.7 274 632-914 116-446 (741)
197 3no2_A Uncharacterized protein 99.5 1.2E-11 4.2E-16 133.2 27.7 240 633-884 4-271 (276)
198 1rwi_B Serine/threonine-protei 99.5 8.2E-12 2.8E-16 132.5 25.2 238 582-828 25-265 (270)
199 3sjl_D Methylamine dehydrogena 99.4 4.6E-11 1.6E-15 133.8 31.2 273 629-915 39-370 (386)
200 1rwi_B Serine/threonine-protei 99.4 1.8E-11 6.3E-16 129.8 26.0 239 624-910 25-265 (270)
201 2qc5_A Streptogramin B lactona 99.4 3E-10 1E-14 121.8 35.8 274 578-865 17-298 (300)
202 2qc5_A Streptogramin B lactona 99.4 4.2E-10 1.4E-14 120.7 36.4 272 622-907 19-298 (300)
203 1yr2_A Prolyl oligopeptidase; 99.4 2.2E-11 7.5E-16 149.7 29.8 275 589-870 115-444 (741)
204 3sjl_D Methylamine dehydrogena 99.4 6E-11 2.1E-15 132.8 29.9 290 586-889 38-384 (386)
205 2mad_H Methylamine dehydrogena 99.4 9.7E-10 3.3E-14 123.7 39.9 272 588-874 28-357 (373)
206 2mad_H Methylamine dehydrogena 99.4 5.5E-10 1.9E-14 125.7 37.2 270 631-910 29-351 (373)
207 1pjx_A Dfpase, DIISOPROPYLFLUO 99.4 1.3E-10 4.5E-15 125.9 29.9 241 663-909 16-299 (314)
208 3hxj_A Pyrrolo-quinoline quino 99.4 2.2E-11 7.6E-16 133.1 20.2 301 584-910 23-325 (330)
209 1pjx_A Dfpase, DIISOPROPYLFLUO 99.3 4.1E-10 1.4E-14 122.1 29.3 236 580-827 17-299 (314)
210 3c75_H MADH, methylamine dehyd 99.3 6.1E-10 2.1E-14 126.7 29.9 271 590-874 82-409 (426)
211 1yiq_A Quinohemoprotein alcoho 99.3 9E-10 3.1E-14 134.0 31.0 301 592-895 70-534 (689)
212 1kb0_A Quinohemoprotein alcoho 99.3 6.1E-10 2.1E-14 135.2 29.0 300 592-895 77-536 (677)
213 3hrp_A Uncharacterized protein 99.2 3.5E-09 1.2E-13 120.6 31.1 235 581-825 131-408 (409)
214 1xip_A Nucleoporin NUP159; bet 99.2 1.4E-10 4.9E-15 130.2 19.0 173 582-775 39-232 (388)
215 3q7m_A Lipoprotein YFGL, BAMB; 99.2 5.8E-09 2E-13 116.8 31.5 264 633-915 52-344 (376)
216 3iuj_A Prolyl endopeptidase; h 99.2 1.2E-09 4.2E-14 133.1 25.9 244 662-915 126-411 (693)
217 3g4e_A Regucalcin; six bladed 99.2 1.7E-08 5.7E-13 109.4 32.0 223 663-897 11-260 (297)
218 3hrp_A Uncharacterized protein 99.2 1E-08 3.5E-13 116.8 31.1 232 665-908 131-409 (409)
219 3c75_H MADH, methylamine dehyd 99.2 3E-09 1E-13 121.0 25.8 257 570-834 109-409 (426)
220 2ghs_A AGR_C_1268P; regucalcin 99.2 3.8E-08 1.3E-12 108.2 32.9 219 666-898 50-291 (326)
221 3g4e_A Regucalcin; six bladed 99.2 3E-08 1E-12 107.4 31.5 226 578-815 10-260 (297)
222 3dr2_A Exported gluconolactona 99.2 6.3E-09 2.1E-13 113.2 26.1 236 573-824 37-303 (305)
223 3iuj_A Prolyl endopeptidase; h 99.1 4E-09 1.4E-13 128.6 25.9 241 577-830 125-408 (693)
224 1xip_A Nucleoporin NUP159; bet 99.1 1.6E-09 5.4E-14 121.7 20.4 170 624-814 39-230 (388)
225 1kb0_A Quinohemoprotein alcoho 99.1 1.1E-08 3.6E-13 124.3 27.6 277 634-917 77-516 (677)
226 3hxj_A Pyrrolo-quinoline quino 99.1 5E-09 1.7E-13 114.2 21.5 267 577-867 56-324 (330)
227 3dr2_A Exported gluconolactona 99.1 1.5E-08 5E-13 110.2 24.7 222 623-858 45-298 (305)
228 4a2l_A BT_4663, two-component 99.1 1.3E-06 4.6E-11 107.9 45.2 322 580-914 214-576 (795)
229 2ghs_A AGR_C_1268P; regucalcin 99.1 1.7E-07 5.7E-12 103.0 33.0 219 582-816 50-291 (326)
230 1yiq_A Quinohemoprotein alcoho 99.1 2E-08 6.8E-13 122.1 27.7 276 634-916 70-513 (689)
231 4a2l_A BT_4663, two-component 99.0 1.1E-06 3.7E-11 108.7 41.8 319 583-911 175-528 (795)
232 1mda_H Methylamine dehydrogena 99.0 1E-08 3.5E-13 114.6 20.5 249 645-914 47-352 (368)
233 1kv9_A Type II quinohemoprotei 99.0 2.3E-07 8E-12 112.3 33.8 302 592-897 66-520 (668)
234 2hz6_A Endoplasmic reticulum t 99.0 1.4E-10 4.9E-15 130.3 5.2 258 591-866 8-278 (369)
235 2qe8_A Uncharacterized protein 99.0 6.6E-08 2.3E-12 107.1 26.4 233 581-816 17-309 (343)
236 2qe8_A Uncharacterized protein 99.0 1.1E-07 3.6E-12 105.4 25.7 259 623-902 17-314 (343)
237 1mda_H Methylamine dehydrogena 99.0 2.8E-08 9.5E-13 111.1 21.0 232 603-838 47-357 (368)
238 1w6s_A Methanol dehydrogenase 98.9 6.5E-07 2.2E-11 106.5 32.7 300 592-893 62-530 (599)
239 2ad6_A Methanol dehydrogenase 98.9 5.1E-07 1.8E-11 107.2 31.0 300 592-895 62-523 (571)
240 2hz6_A Endoplasmic reticulum t 98.9 4.9E-10 1.7E-14 125.9 3.5 204 675-891 8-216 (369)
241 3v9f_A Two-component system se 98.9 1.1E-05 3.7E-10 99.5 42.4 326 581-914 163-529 (781)
242 1npe_A Nidogen, entactin; glyc 98.9 1.1E-05 3.6E-10 85.5 36.1 235 593-836 2-247 (267)
243 3v9f_A Two-component system se 98.8 8.7E-06 3E-10 100.4 40.2 322 581-911 211-570 (781)
244 1flg_A Protein (quinoprotein e 98.8 1.5E-06 5.2E-11 103.3 31.9 301 592-894 68-544 (582)
245 1kv9_A Type II quinohemoprotei 98.8 7.2E-07 2.5E-11 108.0 27.3 275 634-916 66-496 (668)
246 2ece_A 462AA long hypothetical 98.8 3.2E-06 1.1E-10 95.4 30.2 230 632-897 93-399 (462)
247 1npe_A Nidogen, entactin; glyc 98.7 3.2E-05 1.1E-09 81.8 34.7 247 635-891 2-263 (267)
248 1fwx_A Nitrous oxide reductase 98.7 1.3E-06 4.3E-11 101.9 25.0 227 633-869 100-433 (595)
249 2iwa_A Glutamine cyclotransfer 98.7 7.4E-06 2.5E-10 86.9 27.4 198 708-908 13-236 (266)
250 1fwx_A Nitrous oxide reductase 98.7 7.8E-07 2.7E-11 103.7 20.9 267 636-912 17-434 (595)
251 3nol_A Glutamine cyclotransfer 98.7 4.2E-06 1.4E-10 87.9 24.3 188 708-899 35-245 (262)
252 2ad6_A Methanol dehydrogenase 98.6 6E-06 2.1E-10 97.9 28.3 275 634-916 62-502 (571)
253 1w6s_A Methanol dehydrogenase 98.6 1.4E-05 4.9E-10 94.9 29.2 277 634-916 62-511 (599)
254 2ece_A 462AA long hypothetical 98.5 9.1E-06 3.1E-10 91.7 24.6 191 587-786 88-351 (462)
255 3mbr_X Glutamine cyclotransfer 98.5 3E-05 1E-09 80.7 26.3 189 706-898 11-223 (243)
256 2fp8_A Strictosidine synthase; 98.5 3.2E-05 1.1E-09 84.3 27.3 233 625-866 21-312 (322)
257 3nok_A Glutaminyl cyclase; bet 98.5 1.8E-05 6.1E-10 83.2 23.2 187 708-898 47-254 (268)
258 1flg_A Protein (quinoprotein e 98.5 7.1E-05 2.4E-09 88.9 31.5 241 592-837 117-526 (582)
259 2fp8_A Strictosidine synthase; 98.5 2.2E-05 7.6E-10 85.6 24.7 232 582-827 20-313 (322)
260 2p4o_A Hypothetical protein; p 98.5 0.00021 7.3E-09 77.2 32.0 225 665-899 32-278 (306)
261 3nol_A Glutamine cyclotransfer 98.4 2.7E-05 9.2E-10 81.8 22.4 184 583-777 45-245 (262)
262 3nok_A Glutaminyl cyclase; bet 98.3 2.6E-05 8.8E-10 82.0 20.2 182 583-776 57-254 (268)
263 2iwa_A Glutamine cyclotransfer 98.3 6.9E-05 2.4E-09 79.4 23.6 169 746-915 10-188 (266)
264 2xe4_A Oligopeptidase B; hydro 98.2 0.00015 5.3E-09 88.8 26.5 246 578-830 170-461 (751)
265 1k3i_A Galactose oxidase precu 98.2 2.8E-05 9.7E-10 93.8 19.5 266 627-898 190-530 (656)
266 2xbg_A YCF48-like protein; pho 98.2 0.0023 7.9E-08 69.9 32.7 268 580-864 35-319 (327)
267 2xe4_A Oligopeptidase B; hydro 98.2 0.00018 6.3E-09 88.1 25.4 239 624-870 175-461 (751)
268 3ei3_A DNA damage-binding prot 98.2 0.0067 2.3E-07 77.3 40.4 315 580-907 553-953 (1158)
269 1ijq_A LDL receptor, low-densi 98.1 0.0052 1.8E-07 66.7 34.0 226 601-835 9-246 (316)
270 3v64_C Agrin; beta propeller, 98.1 0.0021 7.1E-08 71.0 31.0 245 580-835 33-283 (349)
271 3mbr_X Glutamine cyclotransfer 98.1 0.00051 1.7E-08 71.4 24.1 167 746-915 10-186 (243)
272 3qqz_A Putative uncharacterize 98.1 0.00082 2.8E-08 70.7 25.9 206 575-785 21-251 (255)
273 2p4o_A Hypothetical protein; p 98.1 0.00089 3.1E-08 72.3 26.5 230 581-817 32-278 (306)
274 2xbg_A YCF48-like protein; pho 98.0 0.0067 2.3E-07 66.1 32.9 270 623-907 36-320 (327)
275 3p5b_L Low density lipoprotein 98.0 0.0093 3.2E-07 67.1 34.5 236 600-844 90-337 (400)
276 3v65_B Low-density lipoprotein 98.0 0.0038 1.3E-07 70.0 30.8 242 583-835 79-326 (386)
277 3qqz_A Putative uncharacterize 98.0 0.0017 5.9E-08 68.2 25.5 205 618-825 22-251 (255)
278 1k3i_A Galactose oxidase precu 98.0 0.00042 1.5E-08 83.5 23.2 237 669-910 190-498 (656)
279 3sov_A LRP-6, low-density lipo 97.9 0.0044 1.5E-07 67.5 28.8 227 601-835 12-246 (318)
280 3tc9_A Hypothetical hydrolase; 97.9 0.0026 8.9E-08 72.4 27.3 153 582-743 138-300 (430)
281 3ott_A Two-component system se 97.9 0.11 3.7E-06 63.4 43.4 323 581-913 146-506 (758)
282 3s94_A LRP-6, low-density lipo 97.8 0.066 2.2E-06 63.7 38.3 321 581-910 84-468 (619)
283 3s94_A LRP-6, low-density lipo 97.8 0.037 1.3E-06 65.9 35.6 323 581-912 40-426 (619)
284 3tc9_A Hypothetical hydrolase; 97.8 0.0041 1.4E-07 70.7 26.3 231 666-908 138-429 (430)
285 3v64_C Agrin; beta propeller, 97.8 0.018 6.1E-07 63.4 30.2 224 643-875 52-283 (349)
286 3ott_A Two-component system se 97.7 0.18 6.1E-06 61.4 42.1 316 580-912 62-404 (758)
287 3amr_A 3-phytase; beta-propell 97.7 0.0078 2.7E-07 65.7 25.2 199 591-794 39-271 (355)
288 1ijq_A LDL receptor, low-densi 97.7 0.025 8.5E-07 61.2 29.5 203 581-792 30-243 (316)
289 3v65_B Low-density lipoprotein 97.7 0.021 7.3E-07 63.7 29.5 231 636-876 89-327 (386)
290 3p5b_L Low density lipoprotein 97.7 0.06 2E-06 60.4 33.2 239 642-885 90-338 (400)
291 4hw6_A Hypothetical protein, I 97.7 0.1 3.5E-06 59.2 35.4 230 666-908 140-432 (433)
292 4hw6_A Hypothetical protein, I 97.7 0.016 5.5E-07 65.9 28.3 201 582-790 140-376 (433)
293 4a0p_A LRP6, LRP-6, low-densit 97.6 0.2 7E-06 59.6 41.7 198 581-789 37-239 (628)
294 3amr_A 3-phytase; beta-propell 97.6 0.011 3.6E-07 64.7 23.6 197 634-835 40-272 (355)
295 3sov_A LRP-6, low-density lipo 97.6 0.046 1.6E-06 59.3 29.1 224 643-874 12-245 (318)
296 3m0c_C LDL receptor, low-densi 97.5 0.059 2E-06 65.9 31.8 226 600-834 402-639 (791)
297 4a0p_A LRP6, LRP-6, low-densit 97.5 0.11 3.8E-06 61.9 33.2 222 600-830 13-240 (628)
298 2ism_A Putative oxidoreductase 97.3 0.028 9.4E-07 62.0 23.0 226 665-897 31-333 (352)
299 2ism_A Putative oxidoreductase 97.2 0.13 4.6E-06 56.4 28.4 99 582-683 32-153 (352)
300 3ei3_A DNA damage-binding prot 97.2 0.94 3.2E-05 57.7 39.8 306 592-909 617-999 (1158)
301 1n7d_A LDL receptor, low-densi 97.2 0.0015 5E-08 79.3 13.0 226 601-836 385-623 (699)
302 3kya_A Putative phosphatase; s 97.2 0.07 2.4E-06 61.3 26.0 233 666-910 140-476 (496)
303 3m0c_C LDL receptor, low-densi 97.2 0.25 8.4E-06 60.4 32.2 227 643-874 403-639 (791)
304 2p9w_A MAL S 1 allergenic prot 97.2 0.033 1.1E-06 60.3 21.6 159 583-745 15-216 (334)
305 2vpj_A Kelch-like protein 12; 97.2 0.051 1.7E-06 57.8 23.3 231 633-870 14-281 (301)
306 3kya_A Putative phosphatase; s 97.1 0.19 6.6E-06 57.6 28.7 161 582-743 140-340 (496)
307 3a9g_A Putative uncharacterize 97.1 0.14 4.7E-06 56.4 26.7 227 665-897 29-330 (354)
308 2xzh_A Clathrin heavy chain 1; 97.1 0.42 1.5E-05 51.3 30.2 252 643-908 48-331 (365)
309 2vpj_A Kelch-like protein 12; 97.1 0.049 1.7E-06 57.9 22.1 218 602-829 31-280 (301)
310 2p9w_A MAL S 1 allergenic prot 97.0 0.099 3.4E-06 56.5 23.7 162 625-788 15-216 (334)
311 2xzh_A Clathrin heavy chain 1; 97.0 0.57 1.9E-05 50.4 31.9 254 602-866 49-331 (365)
312 2xn4_A Kelch-like protein 2; s 96.9 0.085 2.9E-06 56.1 22.1 149 633-791 61-233 (302)
313 2g8s_A Glucose/sorbosone dehyd 96.9 0.33 1.1E-05 53.2 26.9 237 665-907 18-350 (353)
314 2xn4_A Kelch-like protein 2; s 96.8 0.096 3.3E-06 55.7 21.7 185 724-911 61-278 (302)
315 1n7d_A LDL receptor, low-densi 96.8 0.0084 2.9E-07 72.6 14.5 207 581-795 406-622 (699)
316 3ii7_A Kelch-like protein 7; p 96.8 0.16 5.4E-06 54.1 23.2 226 594-829 14-274 (306)
317 1bpo_A Protein (clathrin); cla 96.8 1 3.4E-05 50.3 31.8 228 586-825 71-329 (494)
318 3ii7_A Kelch-like protein 7; p 96.7 0.22 7.4E-06 53.0 23.0 228 634-871 12-276 (306)
319 3a9g_A Putative uncharacterize 96.6 1.1 3.7E-05 49.1 31.5 232 581-816 29-330 (354)
320 1zgk_A Kelch-like ECH-associat 96.6 0.15 5.2E-06 54.4 21.3 229 591-829 24-289 (308)
321 2g8s_A Glucose/sorbosone dehyd 96.6 1.2 4E-05 48.8 28.7 230 582-815 19-340 (353)
322 3sre_A PON1, serum paraoxonase 96.5 0.31 1E-05 53.6 23.1 177 642-826 81-297 (355)
323 3pbp_A Nucleoporin NUP82; beta 96.5 0.12 4E-06 57.7 19.4 151 588-740 28-208 (452)
324 1zgk_A Kelch-like ECH-associat 96.4 0.24 8.3E-06 52.8 21.3 230 632-871 23-291 (308)
325 4asc_A Kelch repeat and BTB do 96.4 0.34 1.2E-05 51.8 22.4 221 679-910 8-278 (315)
326 3sre_A PON1, serum paraoxonase 96.2 1.9 6.4E-05 47.2 27.7 193 583-785 52-296 (355)
327 1bpo_A Protein (clathrin); cla 96.2 2.2 7.5E-05 47.7 33.2 252 643-908 47-330 (494)
328 4asc_A Kelch repeat and BTB do 96.2 0.66 2.2E-05 49.5 23.2 181 602-792 13-226 (315)
329 2be1_A Serine/threonine-protei 96.0 0.072 2.4E-06 58.2 14.3 188 677-872 11-236 (339)
330 2woz_A Kelch repeat and BTB do 95.9 1.1 3.9E-05 47.6 23.8 228 636-873 18-293 (318)
331 2woz_A Kelch repeat and BTB do 95.9 1 3.6E-05 48.0 23.3 188 720-910 52-288 (318)
332 3das_A Putative oxidoreductase 95.8 2.8 9.7E-05 45.6 28.9 229 663-897 30-326 (347)
333 2uvk_A YJHT; unknown function, 95.8 0.62 2.1E-05 50.6 21.3 234 633-874 19-349 (357)
334 2be1_A Serine/threonine-protei 95.5 0.017 5.7E-07 63.2 7.0 142 726-868 11-184 (339)
335 2uvk_A YJHT; unknown function, 95.4 0.54 1.9E-05 51.1 18.8 234 591-834 19-349 (357)
336 3s25_A Hypothetical 7-bladed b 95.3 3.7 0.00013 43.8 28.1 209 589-827 22-255 (302)
337 3pbp_A Nucleoporin NUP82; beta 95.3 1.3 4.6E-05 49.2 21.2 149 632-783 30-208 (452)
338 3sbq_A Nitrous-oxide reductase 95.3 2.5 8.7E-05 48.5 23.7 260 595-856 73-454 (638)
339 1cru_A Protein (soluble quinop 95.2 2.6 9E-05 47.7 24.4 112 665-776 27-163 (454)
340 1tl2_A L10, protein (tachylect 95.2 0.61 2.1E-05 47.3 16.4 148 623-780 41-203 (236)
341 3s25_A Hypothetical 7-bladed b 94.7 3.3 0.00011 44.2 22.1 179 718-911 57-257 (302)
342 1xi4_A Clathrin heavy chain; a 94.7 0.7 2.4E-05 58.8 18.4 245 643-908 47-330 (1630)
343 3qhy_B Beta-lactamase inhibito 94.2 2.3 7.8E-05 44.9 19.2 221 582-827 25-246 (282)
344 1xi4_A Clathrin heavy chain; a 94.0 1.1 3.8E-05 57.0 18.1 229 587-827 72-331 (1630)
345 1tl2_A L10, protein (tachylect 93.9 0.95 3.2E-05 45.9 14.4 148 582-738 42-204 (236)
346 2zwa_A Leucine carboxyl methyl 93.7 1.8 6.3E-05 52.0 19.3 199 590-791 396-639 (695)
347 3qhy_B Beta-lactamase inhibito 93.2 1.9 6.7E-05 45.4 16.4 221 665-908 24-245 (282)
348 2zwa_A Leucine carboxyl methyl 92.8 5.2 0.00018 48.0 21.4 194 632-831 396-639 (695)
349 3das_A Putative oxidoreductase 92.7 13 0.00045 40.3 29.4 150 580-730 31-218 (347)
350 1cru_A Protein (soluble quinop 90.8 7 0.00024 44.2 18.4 109 625-733 29-163 (454)
351 3kci_A Probable E3 ubiquitin-p 89.9 26 0.00089 38.3 31.3 230 634-866 62-344 (389)
352 1lw3_A Myotubularin-related pr 89.1 2.5 8.6E-05 49.4 12.7 94 155-252 84-184 (657)
353 1zsq_A Myotubularin-related pr 87.7 3.6 0.00012 47.1 12.7 94 155-252 12-112 (528)
354 1pfj_A TFIIH basal transcripti 86.6 3.2 0.00011 36.7 8.8 73 173-250 20-96 (108)
355 3sbq_A Nitrous-oxide reductase 85.9 56 0.0019 37.7 23.4 253 636-897 72-453 (638)
356 1zi0_A DNA gyrase subunit A; b 84.8 43 0.0015 35.4 28.5 193 591-785 2-224 (307)
357 2wg3_C Hedgehog-interacting pr 84.7 57 0.002 36.7 29.4 112 665-777 14-159 (463)
358 3uc1_A DNA gyrase subunit A; D 83.2 53 0.0018 35.1 23.3 163 581-744 95-279 (327)
359 3no0_A DNA gyrase subunit A; D 82.4 50 0.0017 34.3 23.1 161 581-744 24-196 (276)
360 3q6k_A 43.2 kDa salivary prote 81.6 66 0.0023 35.2 21.4 171 603-774 124-341 (381)
361 3no0_A DNA gyrase subunit A; D 80.4 58 0.002 33.8 26.0 161 623-786 24-195 (276)
362 2yf0_A Myotubularin-related pr 80.0 5.3 0.00018 45.5 9.6 76 170-252 22-97 (512)
363 4hvt_A Ritya.17583.B, post-pro 79.6 1.1E+02 0.0037 36.5 23.3 228 630-866 137-429 (711)
364 3kci_A Probable E3 ubiquitin-p 78.6 80 0.0027 34.3 30.9 236 667-908 55-344 (389)
365 1wp5_A Topoisomerase IV; broke 75.6 88 0.003 33.3 28.8 235 590-826 3-276 (323)
366 2wg3_C Hedgehog-interacting pr 74.8 1.1E+02 0.0039 34.2 28.0 104 582-685 15-159 (463)
367 3l6v_A GYRA, DNA gyrase subuni 74.7 1E+02 0.0035 33.5 28.6 153 589-743 4-179 (370)
368 3b7f_A Glycosyl hydrolase, BNR 73.8 1E+02 0.0035 33.2 26.2 184 635-824 23-259 (394)
369 3mvd_K Regulator of chromosome 70.0 1.3E+02 0.0045 32.8 37.3 235 666-908 76-373 (423)
370 1suu_A DNA gyrase subunit A; t 69.6 1.2E+02 0.004 32.1 30.0 195 590-786 6-230 (312)
371 4d9s_A UVB-resistance protein 61.7 1.8E+02 0.0063 31.6 36.7 193 666-865 122-355 (406)
372 3b7f_A Glycosyl hydrolase, BNR 56.9 2.1E+02 0.0072 30.7 30.9 286 594-887 24-391 (394)
373 1sqj_A OXG-RCBH, oligoxylogluc 55.9 3.3E+02 0.011 32.6 26.0 167 580-750 14-206 (789)
374 1suu_A DNA gyrase subunit A; t 53.4 2.2E+02 0.0075 29.9 26.5 162 582-744 48-231 (312)
375 1y5o_A TFB1, RNA polymerase II 50.9 1.3E+02 0.0046 26.6 10.4 76 172-250 11-104 (115)
376 3uc1_A DNA gyrase subunit A; D 50.9 2.5E+02 0.0085 29.7 26.5 161 582-743 43-227 (327)
377 2zux_A YESW protein; beta-prop 50.4 3.4E+02 0.012 31.2 25.4 264 578-866 176-531 (591)
378 3mvd_K Regulator of chromosome 49.9 2.8E+02 0.0097 30.1 31.8 227 633-866 83-373 (423)
379 3hsa_A Pleckstrin homology dom 48.3 1.3E+02 0.0046 27.2 10.2 78 173-252 41-122 (126)
380 4gq2_M Nucleoporin NUP120; bet 46.0 50 0.0017 40.9 9.7 38 582-619 237-274 (950)
381 3f5r_A FACT complex subunit PO 44.9 71 0.0024 31.1 8.4 79 171-253 34-117 (191)
382 4gq2_M Nucleoporin NUP120; bet 44.5 4.3E+02 0.015 32.5 17.8 39 714-752 236-274 (950)
383 1pls_A Pleckstrin homology dom 44.3 1E+02 0.0035 26.5 9.1 73 176-252 25-98 (113)
384 1wgq_A FYVE, rhogef and PH dom 44.2 92 0.0031 26.6 8.7 73 176-252 28-100 (109)
385 3f7f_A Nucleoporin NUP120; nuc 41.9 62 0.0021 38.4 8.9 38 839-876 222-259 (729)
386 1fao_A Dual adaptor of phospho 39.3 1.3E+02 0.0046 26.3 9.2 71 176-251 38-108 (126)
387 4hvt_A Ritya.17583.B, post-pro 39.2 5.5E+02 0.019 30.3 24.5 230 672-908 137-429 (711)
388 1zi0_A DNA gyrase subunit A; b 38.3 3.6E+02 0.012 28.0 25.4 160 583-743 44-225 (307)
389 3of7_A Regulator of chromosome 38.1 4.5E+02 0.015 29.1 28.9 187 714-908 148-404 (473)
390 3cxb_B Pleckstrin homology dom 36.4 1.4E+02 0.0049 25.8 8.7 73 175-251 23-97 (112)
391 1wp5_A Topoisomerase IV; broke 34.5 4.3E+02 0.015 27.8 26.7 162 582-744 40-225 (323)
392 1u5d_A SKAP55, SRC kinase-asso 34.0 1.3E+02 0.0045 25.2 8.0 72 176-251 27-101 (108)
393 4fhn_B Nucleoporin NUP120; pro 33.2 1.2E+02 0.0041 38.3 10.4 39 758-796 239-277 (1139)
394 3f7f_A Nucleoporin NUP120; nuc 32.1 99 0.0034 36.7 8.5 38 581-620 222-259 (729)
395 1zvt_A Topoisomerase IV subuni 31.4 4.2E+02 0.015 26.8 14.0 144 677-827 3-163 (256)
396 3zwu_A Alkaline phosphatase PH 31.0 99 0.0034 35.9 8.3 60 715-774 477-548 (592)
397 2p0d_A RHO GTPase-activating p 30.8 1.5E+02 0.0053 26.4 8.1 73 176-251 38-120 (129)
398 1zvt_A Topoisomerase IV subuni 30.7 4.4E+02 0.015 26.7 19.4 147 595-744 5-163 (256)
399 2yry_A Pleckstrin homology dom 30.5 1.7E+02 0.0059 25.2 8.3 72 176-251 43-116 (122)
400 2d9y_A Pleckstrin homology dom 28.6 2E+02 0.0067 24.6 8.3 74 176-253 32-107 (117)
401 4fhn_B Nucleoporin NUP120; pro 28.6 2.9E+02 0.0099 34.8 12.8 38 715-752 239-276 (1139)
402 2hth_B Vacuolar protein sortin 27.8 1E+02 0.0034 28.5 6.2 62 20-84 13-75 (140)
403 1eaz_A Tandem PH domain contai 26.8 1.8E+02 0.006 25.3 7.7 72 176-252 34-108 (125)
404 1wg7_A Dedicator of cytokinesi 26.7 1.8E+02 0.0061 26.4 8.0 73 176-252 44-121 (150)
405 4a9v_A PHOX; hydrolase, beta-p 26.6 1.7E+02 0.006 33.7 9.1 62 714-775 476-549 (592)
406 4d9s_A UVB-resistance protein 26.0 6.4E+02 0.022 27.1 38.0 234 666-908 69-356 (406)
407 2cof_A Protein KIAA1914; PH do 23.6 3.3E+02 0.011 22.9 8.9 73 176-252 26-98 (107)
408 2cod_A Centaurin-delta 1; ARF 23.2 2.7E+02 0.0094 23.7 8.2 67 176-251 29-95 (115)
409 2cay_A VPS36 PH domain, vacuol 23.0 1.2E+02 0.0043 28.1 5.9 80 171-252 49-130 (145)
410 3q6k_A 43.2 kDa salivary prote 22.9 7.4E+02 0.025 26.7 19.0 143 645-787 124-306 (381)
411 2dkp_A Pleckstrin homology dom 22.7 3.3E+02 0.011 23.5 8.8 72 176-251 42-115 (128)
412 2zux_A YESW protein; beta-prop 22.4 9.2E+02 0.031 27.6 26.9 181 715-908 327-531 (591)
413 1zvu_A Topoisomerase IV subuni 21.6 1E+03 0.035 27.9 16.7 79 665-744 554-633 (716)
414 1btn_A Beta-spectrin; signal t 20.3 1.8E+02 0.006 24.4 6.1 73 176-251 27-104 (106)
415 1a12_A RCC1, regulator of chro 20.1 8.1E+02 0.028 26.2 35.7 232 665-908 59-364 (413)
No 1
>1t77_A Lipopolysaccharide-responsive and beige-like anchor protein, CDC4-like protein; PH-beach domains, vesicle trafficking, signal transduction; 2.40A {Homo sapiens} SCOP: a.169.1.1 b.55.1.6 PDB: 1mi1_A
Probab=100.00 E-value=5.7e-125 Score=1032.14 Aligned_cols=380 Identities=47% Similarity=0.766 Sum_probs=352.6
Q ss_pred ceEEEEEEEEEeeeeEeceEEEEecCeEEEEeCCCC------CC-------ceEEEEeccccceeeeccccCcceEEEEE
Q psy3053 157 KVILETFGNKITPLVVNPGRIVLSSTNLYFQPFNNI------EP-------HKLLKVRLAGIKRIIRRRFLLQQVGIEIY 223 (917)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~f~~~~~~------~~-------~~~~~~~~~~i~~~~~r~~~~~~~~~e~~ 223 (917)
+++++++|++|+|+++.+|+|.||++.|||+|.+.. +. ....+|++++|++|++|||+||++|||||
T Consensus 2 ~v~~~~~~~~i~p~~~~~G~l~it~~~iyF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~i~~Rryll~~~alEif 81 (414)
T 1t77_A 2 PVSLSTPAQLVAPSVVVKGTLSVTSSELYFEVDEEDPNFKKIDPKILAYTEGLHGKWLFTEIRSIFSRRYLLQNTALEIF 81 (414)
T ss_dssp CCSEEEEEEEECSSCEEEEEEEECSSEEEEEECTTCHHHHHSCHHHHHHCCCTTCEEEGGGEEEEEEEEETTEEEEEEEE
T ss_pred CEEEEEEEEEEeeecceeeEEEEeCCEEEEEeCCCcccccccccchhccccCcceEecchheeeeeeeeccCcceeEEEE
Confidence 578899999999999999999999999999985421 11 11247999999999999999999999999
Q ss_pred EecCCCceeEEEecCChhhHHHHHHHHhCCcc------c---ccc--c----chhHHHHHHHHcCCCChHHHHHHhhhcc
Q psy3053 224 FKDLEPVKYLYLTLKTQGARDTLYNALLDLPE------L---QLS--H----SDQEIMTLRWQNGALSNYDYLMYLNSLA 288 (917)
Q Consensus 224 ~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~------~---~~~--~----~~~~~~~~~w~~~~isnf~yl~~ln~~~ 288 (917)
+.+| +++||+|.+++.++++++.+..... + .+. . ....++|++|++|+||||||||+||++|
T Consensus 82 ~~~g---~s~~l~F~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~W~~g~iSNFeYLm~LN~~a 158 (414)
T 1t77_A 82 MANR---VAVMFNFPDPATVKKVVNFLPRVGVGTSFGLPQTRRISLASPRQLFKASNMTQRWQHREISNFEYLMFLNTIA 158 (414)
T ss_dssp ETTS---CEEEEECSSHHHHHHHHHHSCSCTTCSTTSCCCCTTTTTCCHHHHHHHCSHHHHHHTTSSCHHHHHHHHHHHH
T ss_pred EcCC---cEEEEEcCCHHHHHHHHHhccccccccccCCccccccccCCHHHHhhhhhHHHHHhcCCccHHHHHHHHHHHc
Confidence 9998 8999999999889999988753210 0 011 0 1234699999999999999999999999
Q ss_pred CCCcCCCCCCCcccEEeccCCCCccCCCCCCCcccCCCccccCCHhHHHHHHHHHccCC---CCCcccCCCCCChhhHhh
Q psy3053 289 DRSLNDLTQYPVFPWVISNYTCDTLDLSDSNNYRDLSKPIGALNPTRLERLKERYNEMP---HPKFLYGSHYSTPGFVLF 365 (917)
Q Consensus 289 grs~~d~~qypvfpwv~~~y~s~~ldl~~~~~~rdlskp~g~~~~~r~~~~~~~~~~~~---~~~~~y~~~ys~~~~v~~ 365 (917)
|||||||+|||||||||+||+|++|||+||++||||||||||||++|++.|++||+++. .|+||||||||+|++|++
T Consensus 159 GRs~nDl~qYPVFPWVl~dy~s~~ldl~~~~~~RDLskpigaln~~r~~~~~~ry~~~~~~~~~~f~ygshyS~~~~V~~ 238 (414)
T 1t77_A 159 GRSYNDLNQYPVFPWVITNYESEELDLTLPTNFRDLSKPIGALNPKRAAFFAERYESWEDDQVPKFHYGTHYSTASFVLA 238 (414)
T ss_dssp TCCSSCGGGCCCBCCCBCCCSSSSCCTTCGGGBCCTTSCHHHHCHHHHHHHHHHHHHCCCSSSCCCSBSSCSCCHHHHHH
T ss_pred CCCccccccCcccceeeccCcccccccCCccccccCCCchhhcCHHHHHHHHHHHHhhcccCCCCcccCCCCCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999884 589999999999999999
Q ss_pred hhcccCchh--HHHHhcCCCCCCCCccccHHHHHHHhccCCCCcccccccccCCCCCcccccccCCCCCccccCCceeCC
Q psy3053 366 YLVRKFPQY--MLCLQNGRFDHPDRMFNSIPDIWRNVLTNMSDFKELVPEFYDTEQKGDFLENSYGIHFGYRYDGTKVGG 443 (917)
Q Consensus 366 ~l~r~~p~~--~~~~q~g~fd~~~r~f~si~~~~~~~~~~~~d~~elipef~~~~~~~~fl~n~~~~~~g~~~~~~~~~d 443 (917)
||+|+|||+ +++||+|+||+|||||+||+++|++|+++++|||||||||||+ ||||+|.|+++||++|+|+.|+|
T Consensus 239 yL~R~ePft~~~~~lq~g~fD~~dR~F~Si~~~w~~~~~~~~d~kElIPEFf~~---Pe~l~N~n~~~lG~~~~g~~v~D 315 (414)
T 1t77_A 239 WLLRIEPFTTYFLNLQGGKFDHADRTFSSISRAWRNSQRDTSDIKELIPEFYYL---PEMFVNFNNYNLGVMDDGTVVSD 315 (414)
T ss_dssp HHTTSTTHHHHHHHHHTSSCCCTTTSCCBHHHHHHHHHHCTTCCCCBCGGGGTC---GGGGSCTTCCCCCBCTTSCBCSS
T ss_pred HHhcCCcHHHHHHHHhcCCcCCCccchhhHHHHHHHHhccCCCccccCchhhcC---hHhhccccCCccccccCCCCCCc
Confidence 999999974 7899999999999999999999999999999999999999986 59999999999999999999999
Q ss_pred eecCCCCCChHHHHHHHHHHhcchhhhhccccceeehhcccccChHHHhccCccceeeeccccccCcccChHHHHHHHHH
Q psy3053 444 VQLPPWAECPEVFVTKLRQALESDIVSRQLHLWIDLIFGYKQRGVEAEKADNLFYYLCYEGSVNLDMVQDWNQRHALEVQ 523 (917)
Q Consensus 444 v~lp~wa~~~~~fv~~~r~ales~~vs~~l~~WIDlifG~kq~g~~a~~a~N~f~~l~yeg~v~~~~i~d~~~r~a~e~~ 523 (917)
|+|||||++|++||++||+||||+|||+|||+||||||||||+|++|++|.|||||++|+|++|++.+.|+.+|.+++++
T Consensus 316 V~LP~Wa~sp~~FI~~~R~aLES~~VS~~Lh~WIDLiFGykq~G~~Av~a~Nvf~~ltY~~~vd~~~i~d~~~~~a~~~~ 395 (414)
T 1t77_A 316 VELPPWAKTSEEFVHINRLALESEFVSCQLHQWIDLIFGYKQQGPEAVRALNVFYYLTYEGAVNLNSITDPVLREAVEAQ 395 (414)
T ss_dssp CBCCTTCSSHHHHHHHHHHHHHSHHHHTTHHHHHHHHTSTTSSHHHHHHHTCCBCGGGSTTSCCGGGCCSHHHHHHHHHH
T ss_pred eeCCCCCCCHHHHHHHHHHHHcChHhhhhhhhhhhhhcCcccCCHHHHhcCCccccceecCcccccccCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhCCCccccccCCCCCc
Q psy3053 524 IMEFGQIPKQIFHSPHPRR 542 (917)
Q Consensus 524 i~~fGQ~P~qLF~~pHP~r 542 (917)
+.+|||+|.|||.+|||+|
T Consensus 396 i~~fGQ~P~QLF~~pHP~R 414 (414)
T 1t77_A 396 IRSFGQTPSQLLIEPHPPR 414 (414)
T ss_dssp HHHHCCCCCCCCSSCCCCC
T ss_pred HHHcCCChhhhhcCCCCCC
Confidence 9999999999999999987
No 2
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=2.6e-41 Score=407.78 Aligned_cols=346 Identities=16% Similarity=0.212 Sum_probs=282.8
Q ss_pred ccccCCccccceeeeccCCcceEEEEEeCCCcEEEEEecCCceEEEeccCCce--eee----------------------
Q psy3053 562 NSWCDKSILEPLHFCHSHKEAITAVAICGEGISVASVGRDAMLKIHSLKTGRQ--ERS---------------------- 617 (917)
Q Consensus 562 ~~w~~~~~l~~~~~l~~H~~~Vtsv~fSpdg~~Lasgs~Dg~I~IWd~~t~~~--~~~---------------------- 617 (917)
.+|+... .+....+.+|.+.|++++|+|+|++||+|+.||+|+|||+.+++. ...
T Consensus 42 ~l~~~~~-~~~~~~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~ 120 (611)
T 1nr0_A 42 YTVPVGS-LTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAA 120 (611)
T ss_dssp EEEETTC-SSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEE
T ss_pred EEecCCC-cccCeEecCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcceeeEeecccCCceEEEEECCCCCEEEE
Confidence 5677543 356778899999999999999999999999999999999864321 111
Q ss_pred ----------------------eeccccceEEEEEeCCCC-EEEEEecccEEEEEEeccCeeeEEeccCCCceeEEEecC
Q psy3053 618 ----------------------AVLSSMTLSSLCILPDNC-TMLVGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDE 674 (917)
Q Consensus 618 ----------------------~~~~~~~V~sl~~spd~~-~Lasgs~Dg~I~Iwdl~tg~~i~~l~~H~~~Vt~l~~sp 674 (917)
+.+|...|.+++|+|++. .|++|+.|++|++||..+++....+.+|.+.|++++|+|
T Consensus 121 ~~~~~~~~~~v~~wd~~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fsp 200 (611)
T 1nr0_A 121 VGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNP 200 (611)
T ss_dssp EECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECT
T ss_pred EECCCCceeEEEEeeCCCCcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECC
Confidence 234556677788888776 599999999999999999999999999999999999999
Q ss_pred CCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEEEECCCeEEEEECCCCeeeEEec--
Q psy3053 675 KRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGELIIWSLENHLMTQQLS-- 752 (917)
Q Consensus 675 d~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~dG~I~iwDl~~~~~~~~l~-- 752 (917)
++++|++|+.|++|++||+.++..............+|.+.|.+++|+|++++|++|+.||+|++||+.+++.+..+.
T Consensus 201 dg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~ 280 (611)
T 1nr0_A 201 DGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVG 280 (611)
T ss_dssp TSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECC
T ss_pred CCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCC
Confidence 999999999999999999877621100000000112799999999999999999999999999999999877654331
Q ss_pred ----------------------------------------CCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeEEE
Q psy3053 753 ----------------------------------------DDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVC 792 (917)
Q Consensus 753 ----------------------------------------~~h~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~tg~~i~ 792 (917)
.+|...|.+++|+|+|++|++++.|++|++||+.++....
T Consensus 281 ~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~ 360 (611)
T 1nr0_A 281 TRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNR 360 (611)
T ss_dssp SSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEE
T ss_pred CCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceee
Confidence 2688899999999999999999999999999998765432
Q ss_pred Ee------------------------------------------------------------------------------
Q psy3053 793 NK------------------------------------------------------------------------------ 794 (917)
Q Consensus 793 ~~------------------------------------------------------------------------------ 794 (917)
..
T Consensus 361 ~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~ 440 (611)
T 1nr0_A 361 VFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHG 440 (611)
T ss_dssp CSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETT
T ss_pred ecccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCC
Confidence 21
Q ss_pred -----ecCCceEEEEEeCCC-EEEEEeCCCeEEEEECCCCEE--EEEEecCCCceEEE--eecCCEEEEEeCCCeEEEEE
Q psy3053 795 -----VFEEKLLCLSWAGEE-KVILGGALGMVYLVDLIQVQL--LKQVRAHKDAVLSL--HFDNCTMLVGCWDSCVVIYD 864 (917)
Q Consensus 795 -----~~~~~i~~l~~s~~~-~lv~gs~dG~I~vwdl~~~~~--i~~l~~h~~~V~si--s~dg~~Lasgs~DG~I~Iwd 864 (917)
.+...+.+++++|++ .+++|+.||.|++||+.++.. ... .+|...|.++ +|+|++|++++.|++|++|+
T Consensus 441 ~~~~~~~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~~~~~-~~h~~~v~~v~fspdg~~las~s~d~~v~~w~ 519 (611)
T 1nr0_A 441 KLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKT-IVHPAEITSVAFSNNGAFLVATDQSRKVIPYS 519 (611)
T ss_dssp EEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEE-EECSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred ceeeeecCCCceEEEEeCCCCEEEEeCCCCeEEEEEccCCceeeeec-cCCCCceEEEEECCCCCEEEEEcCCCCEEEEE
Confidence 012335678888776 477899999999999987754 334 6899999998 67999999999999999999
Q ss_pred CcC-CeEEEE--ecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCc
Q psy3053 865 VEC-GRIVTE--LAGHEDAISCVAWDEKRKRLISGNLVGAPKLYATEF 909 (917)
Q Consensus 865 l~t-g~~l~~--l~~h~~~V~slafSpdg~~LaSgs~DG~V~IWdl~~ 909 (917)
+.+ ++.... +.+|...|.+++|+|||++||||+.||+|++|+++.
T Consensus 520 ~~~~~~~~~~~~~~~H~~~V~~v~fspdg~~lasgs~D~~v~lW~~~~ 567 (611)
T 1nr0_A 520 VANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNK 567 (611)
T ss_dssp GGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTC
T ss_pred cCCCCceeeeeeeeecccceeEEEECCCCCEEEEEECCCcEEEEECCC
Confidence 988 666543 345999999999999999999999999999999975
No 3
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=2.7e-41 Score=407.69 Aligned_cols=343 Identities=15% Similarity=0.198 Sum_probs=291.1
Q ss_pred ccccCCccccceeeeccCCcceEEEEEeCCCc-EEEEEecCCceEEEeccCCceeeeeeccccceEEEEEeCCCCEEEEE
Q psy3053 562 NSWCDKSILEPLHFCHSHKEAITAVAICGEGI-SVASVGRDAMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTMLVG 640 (917)
Q Consensus 562 ~~w~~~~~l~~~~~l~~H~~~Vtsv~fSpdg~-~Lasgs~Dg~I~IWd~~t~~~~~~~~~~~~~V~sl~~spd~~~Lasg 640 (917)
.+|+.. +....+.+|.+.|++++|+|++. .|++|+.|++|++||..+++....+.+|...|.+++|+|++++|++|
T Consensus 132 ~~wd~~---~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~ 208 (611)
T 1nr0_A 132 FLFDTG---TSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFAST 208 (611)
T ss_dssp EETTTC---CBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEE
T ss_pred EEeeCC---CCcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEE
Confidence 467742 34567899999999999999987 59999999999999999998889999999999999999999999999
Q ss_pred ecccEEEEEEeccCeeeEEec-------cCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCcc------------
Q psy3053 641 CWDSCVVIYDVECGRIVTELA-------GHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMK------------ 701 (917)
Q Consensus 641 s~Dg~I~Iwdl~tg~~i~~l~-------~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~------------ 701 (917)
+.|++|++||+.+++....+. +|.+.|.+++|+|++++|++|+.|++|++||+.++.....
T Consensus 209 s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~ 288 (611)
T 1nr0_A 209 GGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQL 288 (611)
T ss_dssp ETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEE
T ss_pred ECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeE
Confidence 999999999999999888874 7999999999999999999999999999999986531100
Q ss_pred ------------------------CCcceeeeccCCCceEEEEEeCCCCEEEEEECCCeEEEEECCCCeeeEEecCC---
Q psy3053 702 ------------------------PSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGELIIWSLENHLMTQQLSDD--- 754 (917)
Q Consensus 702 ------------------------~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~dG~I~iwDl~~~~~~~~l~~~--- 754 (917)
.........+|...|.+++|+|+|++|++|+.||.|++||+.++.....+...
T Consensus 289 ~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~ 368 (611)
T 1nr0_A 289 GIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHAT 368 (611)
T ss_dssp EEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSS
T ss_pred EEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeecccCCcc
Confidence 00012234578999999999999999999999999999999876543322100
Q ss_pred ------------------------------------------------------------------------------CC
Q psy3053 755 ------------------------------------------------------------------------------IN 756 (917)
Q Consensus 755 ------------------------------------------------------------------------------h~ 756 (917)
+.
T Consensus 369 ~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~ 448 (611)
T 1nr0_A 369 MITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPIS 448 (611)
T ss_dssp CEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECS
T ss_pred eEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecC
Confidence 12
Q ss_pred CCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeE--EEEeecCCceEEEEEeCCC-EEEEEeCCCeEEEEECCC-CEEEE
Q psy3053 757 ASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQ--VCNKVFEEKLLCLSWAGEE-KVILGGALGMVYLVDLIQ-VQLLK 832 (917)
Q Consensus 757 ~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~tg~~--i~~~~~~~~i~~l~~s~~~-~lv~gs~dG~I~vwdl~~-~~~i~ 832 (917)
..+.+++|+|+|++|++|+.|++|++||+.++.. .....+...|.+++|+|++ .+++++.|+.|++|++.+ ++...
T Consensus 449 ~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~~~~~~~h~~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~~~~~ 528 (611)
T 1nr0_A 449 YNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAH 528 (611)
T ss_dssp SCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESC
T ss_pred CCceEEEEeCCCCEEEEeCCCCeEEEEEccCCceeeeeccCCCCceEEEEECCCCCEEEEEcCCCCEEEEEcCCCCceee
Confidence 3467899999999999999999999999987754 2345688899999999876 477899999999999987 66554
Q ss_pred E--EecCCCceEEE--eecCCEEEEEeCCCeEEEEECcCCe-EE-EEecCC-CCCEEEEEEcCCCCEEEEEeCCCcEEEE
Q psy3053 833 Q--VRAHKDAVLSL--HFDNCTMLVGCWDSCVVIYDVECGR-IV-TELAGH-EDAISCVAWDEKRKRLISGNLVGAPKLY 905 (917)
Q Consensus 833 ~--l~~h~~~V~si--s~dg~~Lasgs~DG~I~Iwdl~tg~-~l-~~l~~h-~~~V~slafSpdg~~LaSgs~DG~V~IW 905 (917)
. ..+|...|.++ +|||++|++|+.||+|++||+.++. .. ..+.+| .+.|.+++|+|+++ |++|+.||+|++|
T Consensus 529 ~~~~~~H~~~V~~v~fspdg~~lasgs~D~~v~lW~~~~~~~~~~~~~~~h~~~~v~~v~fs~d~~-l~s~~~D~~i~lW 607 (611)
T 1nr0_A 529 TNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETT-IVSAGQDSNIKFW 607 (611)
T ss_dssp CCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEEEETTE-EEEEETTSCEEEE
T ss_pred eeeeeecccceeEEEECCCCCEEEEEECCCcEEEEECCCcccccchhhccCcccCeeEEEEcCCCE-EEEecCCCCEEEE
Confidence 3 34599999998 6699999999999999999998765 33 667889 89999999999998 9999999999999
Q ss_pred ecC
Q psy3053 906 ATE 908 (917)
Q Consensus 906 dl~ 908 (917)
++.
T Consensus 608 ~~~ 610 (611)
T 1nr0_A 608 NVP 610 (611)
T ss_dssp ECC
T ss_pred ecc
Confidence 985
No 4
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=2e-41 Score=388.49 Aligned_cols=307 Identities=14% Similarity=0.186 Sum_probs=273.5
Q ss_pred eeeeccCCcceEEEEEeCCCcEEEEEecCCceEEEeccCCceeeeeeccccceEEEEEeCCCCEEEEEecccEEEEEEec
Q psy3053 573 LHFCHSHKEAITAVAICGEGISVASVGRDAMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTMLVGCWDSCVVIYDVE 652 (917)
Q Consensus 573 ~~~l~~H~~~Vtsv~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~~~~~~~~V~sl~~spd~~~Lasgs~Dg~I~Iwdl~ 652 (917)
...+.+|.++|++++|+|+++++++|+.||+|++||+.+++....+.+|...|.+++|+|++++|++|+.||+|++||+.
T Consensus 101 ~~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~ 180 (410)
T 1vyh_C 101 KYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQ 180 (410)
T ss_dssp SCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETT
T ss_pred eEeecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCC
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCeeeEEeccCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEEEE
Q psy3053 653 CGRIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGT 732 (917)
Q Consensus 653 tg~~i~~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs 732 (917)
+++++..+.+|...|++++|+|++++|++|+.|++|++||+.++ .......+|...|.++++++++.++++|+
T Consensus 181 ~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~-------~~~~~~~~h~~~v~~~~~~~~g~~l~s~s 253 (410)
T 1vyh_C 181 GFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTG-------YCVKTFTGHREWVRMVRPNQDGTLIASCS 253 (410)
T ss_dssp SSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTC-------CEEEEEECCSSCEEEEEECTTSSEEEEEE
T ss_pred CCceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCC-------cEEEEEeCCCccEEEEEECCCCCEEEEEc
Confidence 99999999999999999999999999999999999999999876 34455678999999999999999999999
Q ss_pred CCCeEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCceEEEEEeCCCEEE
Q psy3053 733 EAGELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCNKVFEEKLLCLSWAGEEKVI 812 (917)
Q Consensus 733 ~dG~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~tg~~i~~~~~~~~i~~l~~s~~~~lv 812 (917)
.||.|++||+.+++....+. .|...|.+++|+|++.+.......+. .......+...++
T Consensus 254 ~D~~v~vwd~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~g~~l~ 312 (410)
T 1vyh_C 254 NDQTVRVWVVATKECKAELR-EHRHVVECISWAPESSYSSISEATGS--------------------ETKKSGKPGPFLL 312 (410)
T ss_dssp TTSCEEEEETTTCCEEEEEC-CCSSCEEEEEECCSCGGGGGGGCCSC--------------------C-------CCEEE
T ss_pred CCCeEEEEECCCCceeeEec-CCCceEEEEEEcCcccccchhhhccc--------------------cccccCCCCCEEE
Confidence 99999999999999888887 89999999999997643211111000 0000111234789
Q ss_pred EEeCCCeEEEEECCCCEEEEEEecCCCceEEE--eecCCEEEEEeCCCeEEEEECcCCeEEEEecCCCCCEEEEEEcCCC
Q psy3053 813 LGGALGMVYLVDLIQVQLLKQVRAHKDAVLSL--HFDNCTMLVGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKR 890 (917)
Q Consensus 813 ~gs~dG~I~vwdl~~~~~i~~l~~h~~~V~si--s~dg~~Lasgs~DG~I~Iwdl~tg~~l~~l~~h~~~V~slafSpdg 890 (917)
+|+.||.|++||+.++.++..+.+|...|.++ ++++++|++|+.||.|++||+.+++++..+.+|...|++++|+|++
T Consensus 313 sgs~D~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~ 392 (410)
T 1vyh_C 313 SGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTA 392 (410)
T ss_dssp EEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSS
T ss_pred EEeCCCeEEEEECCCCceEEEEECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEcCCC
Confidence 99999999999999999999999999999988 5689999999999999999999999999999999999999999999
Q ss_pred CEEEEEeCCCcEEEEec
Q psy3053 891 KRLISGNLVGAPKLYAT 907 (917)
Q Consensus 891 ~~LaSgs~DG~V~IWdl 907 (917)
.+|+||+.||+|++|++
T Consensus 393 ~~l~sgs~D~~i~vW~~ 409 (410)
T 1vyh_C 393 PYVVTGSVDQTVKVWEC 409 (410)
T ss_dssp SCEEEEETTSEEEEEC-
T ss_pred CEEEEEeCCCcEEEEeC
Confidence 99999999999999986
No 5
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=5.1e-40 Score=366.61 Aligned_cols=290 Identities=17% Similarity=0.287 Sum_probs=260.1
Q ss_pred ccceeeeccCCcceEEEEEeCCCcEEEEEecCCceEEEeccCCceeeeeeccccceEEEEEeCCCCEEEEEecccEEEEE
Q psy3053 570 LEPLHFCHSHKEAITAVAICGEGISVASVGRDAMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTMLVGCWDSCVVIY 649 (917)
Q Consensus 570 l~~~~~l~~H~~~Vtsv~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~~~~~~~~V~sl~~spd~~~Lasgs~Dg~I~Iw 649 (917)
.+....+.+|.+.|++++|+|+|++|++|+.||+|++||..+++.+..+..|...|.+++|+|+++++++|+.|+.|++|
T Consensus 45 ~~~~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw 124 (340)
T 1got_B 45 MRTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIY 124 (340)
T ss_dssp CCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEE
T ss_pred chhheeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEE
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeccC----eeeEEeccCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCC
Q psy3053 650 DVECG----RIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDN 725 (917)
Q Consensus 650 dl~tg----~~i~~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg 725 (917)
++.++ +....+.+|.+.|.+++|++++ .+++++.|++|++||+.++ .......+|...|.+++|+|++
T Consensus 125 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~l~s~s~d~~i~~wd~~~~-------~~~~~~~~h~~~v~~~~~~~~~ 196 (340)
T 1got_B 125 NLKTREGNVRVSRELAGHTGYLSCCRFLDDN-QIVTSSGDTTCALWDIETG-------QQTTTFTGHTGDVMSLSLAPDT 196 (340)
T ss_dssp ETTTCSBSCEEEEEEECCSSCEEEEEEEETT-EEEEEETTSCEEEEETTTT-------EEEEEECCCSSCEEEEEECTTS
T ss_pred ECccCCCcceeEEEecCCCccEEEEEECCCC-cEEEEECCCcEEEEECCCC-------cEEEEEcCCCCceEEEEECCCC
Confidence 99875 4567788999999999999876 5899999999999999876 3444566899999999999999
Q ss_pred CEEEEEECCCeEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCceEEEEE
Q psy3053 726 NQLAVGTEAGELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCNKVFEEKLLCLSW 805 (917)
Q Consensus 726 ~~Lasgs~dG~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~tg~~i~~~~~~~~i~~l~~ 805 (917)
+++++|+.||.|++||++++.....+. +|...|.+++|+|+++.+++++.||+|++||+++++.+....+.
T Consensus 197 ~~l~sg~~d~~v~~wd~~~~~~~~~~~-~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~-------- 267 (340)
T 1got_B 197 RLFVSGACDASAKLWDVREGMCRQTFT-GHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHD-------- 267 (340)
T ss_dssp SEEEEEETTSCEEEEETTTCSEEEEEC-CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCT--------
T ss_pred CEEEEEeCCCcEEEEECCCCeeEEEEc-CCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccC--------
Confidence 999999999999999999999988887 89999999999999999999999999999999887654332211
Q ss_pred eCCCEEEEEeCCCeEEEEECCCCEEEEEEecCCCceEEE--eecCCEEEEEeCCCeEEEEECcCCeEEEEecCCCCCEEE
Q psy3053 806 AGEEKVILGGALGMVYLVDLIQVQLLKQVRAHKDAVLSL--HFDNCTMLVGCWDSCVVIYDVECGRIVTELAGHEDAISC 883 (917)
Q Consensus 806 s~~~~lv~gs~dG~I~vwdl~~~~~i~~l~~h~~~V~si--s~dg~~Lasgs~DG~I~Iwdl~tg~~l~~l~~h~~~V~s 883 (917)
.+...|.++ +|+|+++++|+.||.|++||+.+++.+..+.+|.++|.+
T Consensus 268 ------------------------------~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~~v~~ 317 (340)
T 1got_B 268 ------------------------------NIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSC 317 (340)
T ss_dssp ------------------------------TCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEE
T ss_pred ------------------------------CcccceEEEEECCCCCEEEEECCCCeEEEEEcccCcEeeEeecCCCcEEE
Confidence 122345555 568999999999999999999999999999999999999
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEe
Q psy3053 884 VAWDEKRKRLISGNLVGAPKLYA 906 (917)
Q Consensus 884 lafSpdg~~LaSgs~DG~V~IWd 906 (917)
++|+|+|.+|+||+.||.|++||
T Consensus 318 ~~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 318 LGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp EEECTTSSCEEEEETTSCEEEEC
T ss_pred EEEcCCCCEEEEEcCCccEEecC
Confidence 99999999999999999999996
No 6
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=1e-39 Score=388.75 Aligned_cols=329 Identities=20% Similarity=0.299 Sum_probs=294.5
Q ss_pred ccccCCccccceeeeccCCcceEEEEEeCCCcEEEEEecCCceEEEeccCCceeeeeeccccceEEEEEeCCCCEEEEEe
Q psy3053 562 NSWCDKSILEPLHFCHSHKEAITAVAICGEGISVASVGRDAMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTMLVGC 641 (917)
Q Consensus 562 ~~w~~~~~l~~~~~l~~H~~~Vtsv~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~~~~~~~~V~sl~~spd~~~Lasgs 641 (917)
.+|+.. .+.+..+.+|...|++++|+|+++.+++++.|+.|++|+. +++....+.+|...|.+++++|+++.+++++
T Consensus 246 ~~w~~~--~~~~~~~~~~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~-~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~ 322 (577)
T 2ymu_A 246 KLWNRN--GQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDGQTIASAS 322 (577)
T ss_dssp EEECTT--SCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEET-TSCEEEEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred EEEeCC--CCEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCEEEEEeC-CCcEEEEEecCCCCeEEEEECCCCCEEEEEe
Confidence 578743 3567788999999999999999999999999999999996 4677788889999999999999999999999
Q ss_pred cccEEEEEEeccCeeeEEeccCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEE
Q psy3053 642 WDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAI 721 (917)
Q Consensus 642 ~Dg~I~Iwdl~tg~~i~~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 721 (917)
.||.|++||... ..+..+.+|...|.+++|+|+++.|++|+.||+|++||.... .......|...|.+++|
T Consensus 323 ~d~~i~~w~~~~-~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~~~~--------~~~~~~~~~~~v~~~~~ 393 (577)
T 2ymu_A 323 DDKTVKLWNRNG-QHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQ--------LLQTLTGHSSSVRGVAF 393 (577)
T ss_dssp TTSCEEEEETTS-CEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTCC--------EEEEEECCSSCEEEEEE
T ss_pred CCCeEEEEeCCC-CeeEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcCCCC--------EEEEecCCCCCeEEEEE
Confidence 999999999764 456778899999999999999999999999999999996432 44556788999999999
Q ss_pred eCCCCEEEEEECCCeEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCceE
Q psy3053 722 SKDNNQLAVGTEAGELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCNKVFEEKLL 801 (917)
Q Consensus 722 spdg~~Lasgs~dG~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~tg~~i~~~~~~~~i~ 801 (917)
+|+++++++|+.||.|++||. +++.+..+. .|...|.+++|+|+++.|++++.|+.|++||...........+...+.
T Consensus 394 s~dg~~l~~~~~d~~v~~~~~-~~~~~~~~~-~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~v~ 471 (577)
T 2ymu_A 394 SPDGQTIASASDDKTVKLWNR-NGQLLQTLT-GHSSSVWGVAFSPDDQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVR 471 (577)
T ss_dssp CTTSSCEEEEETTSEEEEECT-TCCEEEEEE-CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTSCEEEEEECCSSCEE
T ss_pred CCCCCEEEEEeCCCEEEEEeC-CCCEEEEec-CCCCCeEEEEECCCCCEEEEEcCCCEEEEEECCCCEEEEEcCCCCCEE
Confidence 999999999999999999996 466677776 789999999999999999999999999999975544444456788899
Q ss_pred EEEEeCCC-EEEEEeCCCeEEEEECCCCEEEEEEecCCCceEEE--eecCCEEEEEeCCCeEEEEECcCCeEEEEecCCC
Q psy3053 802 CLSWAGEE-KVILGGALGMVYLVDLIQVQLLKQVRAHKDAVLSL--HFDNCTMLVGCWDSCVVIYDVECGRIVTELAGHE 878 (917)
Q Consensus 802 ~l~~s~~~-~lv~gs~dG~I~vwdl~~~~~i~~l~~h~~~V~si--s~dg~~Lasgs~DG~I~Iwdl~tg~~l~~l~~h~ 878 (917)
+++|+|++ .+++++.|+.|++||. +++.+..+.+|...|+++ +|++++|++|+.||.|++||. +++++..+.+|.
T Consensus 472 ~~~~spd~~~las~~~d~~i~iw~~-~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~-~~~~~~~~~~h~ 549 (577)
T 2ymu_A 472 GVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHS 549 (577)
T ss_dssp EEEECTTSCEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEEECCS
T ss_pred EEEEcCCCCEEEEEeCCCEEEEEcC-CCCEEEEEeCCCCCEEEEEEcCCCCEEEEEECcCEEEEEeC-CCCEEEEEcCCC
Confidence 99999876 4778899999999995 788899999999999998 679999999999999999996 688999999999
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEe
Q psy3053 879 DAISCVAWDEKRKRLISGNLVGAPKLYA 906 (917)
Q Consensus 879 ~~V~slafSpdg~~LaSgs~DG~V~IWd 906 (917)
+.|++++|+|||++|+|++.||+|++||
T Consensus 550 ~~v~~~~fs~dg~~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 550 SSVWGVAFSPDGQTIASASSDKTVKLWN 577 (577)
T ss_dssp SCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred CCEEEEEEcCCCCEEEEEeCCCEEEEeC
Confidence 9999999999999999999999999997
No 7
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=2.6e-39 Score=385.28 Aligned_cols=338 Identities=22% Similarity=0.332 Sum_probs=302.2
Q ss_pred ccccCCccccceeeeccCCcceEEEEEeCCCcEEEEEecCCceEEEeccCCceeeeeeccccceEEEEEeCCCCEEEEEe
Q psy3053 562 NSWCDKSILEPLHFCHSHKEAITAVAICGEGISVASVGRDAMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTMLVGC 641 (917)
Q Consensus 562 ~~w~~~~~l~~~~~l~~H~~~Vtsv~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~~~~~~~~V~sl~~spd~~~Lasgs 641 (917)
.+|+.. .+.+..+.+|.+.|.+++|+|+|++|++++.|+.|++|+. +++.+..+..|...|.+++|+|+++.+++++
T Consensus 205 ~~w~~~--~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~i~~w~~-~~~~~~~~~~~~~~v~~v~~~~d~~~l~~~~ 281 (577)
T 2ymu_A 205 KLWNRN--GQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVNGVAFRPDGQTIASAS 281 (577)
T ss_dssp EEECTT--SCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECT-TSCEEEEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred EEEeCC--CcEEEEEecCCCCEEEEEECCCCCEEEEEeCCCEEEEEeC-CCCEEEEEecCCCCEEEEEEcCCCCEEEEEe
Confidence 577742 3567788999999999999999999999999999999995 5677888889999999999999999999999
Q ss_pred cccEEEEEEeccCeeeEEeccCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEE
Q psy3053 642 WDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAI 721 (917)
Q Consensus 642 ~Dg~I~Iwdl~tg~~i~~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 721 (917)
.|+.|++|+. +++....+.+|.+.|.+++|+|+++.+++++.|++|++||.... ......+|...+.++++
T Consensus 282 ~d~~i~~w~~-~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~--------~~~~~~~~~~~v~~~~~ 352 (577)
T 2ymu_A 282 DDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQ--------HLQTLTGHSSSVWGVAF 352 (577)
T ss_dssp TTSCEEEEET-TSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSC--------EEEEECCCSSCEEEEEE
T ss_pred CCCEEEEEeC-CCcEEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCC--------eeEEEeCCCCCEEEEEE
Confidence 9999999996 46778889999999999999999999999999999999997654 44556788999999999
Q ss_pred eCCCCEEEEEECCCeEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeEEE-EeecCCce
Q psy3053 722 SKDNNQLAVGTEAGELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVC-NKVFEEKL 800 (917)
Q Consensus 722 spdg~~Lasgs~dG~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~tg~~i~-~~~~~~~i 800 (917)
+|+++.+++|+.||.+++||. +++.+..+. .|...|.+++|+|+|++|++++.|+.|++||.. ++.+. ...+...+
T Consensus 353 s~~g~~l~~~~~dg~v~~~~~-~~~~~~~~~-~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~~-~~~~~~~~~~~~~v 429 (577)
T 2ymu_A 353 SPDGQTIASASDDKTVKLWNR-NGQLLQTLT-GHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN-GQLLQTLTGHSSSV 429 (577)
T ss_dssp CTTSSEEEEEETTSEEEEEET-TCCEEEEEE-CCSSCEEEEEECTTSSCEEEEETTSEEEEECTT-CCEEEEEECCSSCE
T ss_pred CCCCCEEEEEeCCCEEEEEcC-CCCEEEEec-CCCCCeEEEEECCCCCEEEEEeCCCEEEEEeCC-CCEEEEecCCCCCe
Confidence 999999999999999999996 466777776 789999999999999999999999999999965 44444 44577889
Q ss_pred EEEEEeCCC-EEEEEeCCCeEEEEECCCCEEEEEEecCCCceEEE--eecCCEEEEEeCCCeEEEEECcCCeEEEEecCC
Q psy3053 801 LCLSWAGEE-KVILGGALGMVYLVDLIQVQLLKQVRAHKDAVLSL--HFDNCTMLVGCWDSCVVIYDVECGRIVTELAGH 877 (917)
Q Consensus 801 ~~l~~s~~~-~lv~gs~dG~I~vwdl~~~~~i~~l~~h~~~V~si--s~dg~~Lasgs~DG~I~Iwdl~tg~~l~~l~~h 877 (917)
.+++++|++ .+++++.|+.|++||. +++.+..+.+|...|.++ +|++++|++++.|+.|++||. +++++..+.+|
T Consensus 430 ~~~~~s~d~~~l~~~~~d~~v~~w~~-~~~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~-~~~~~~~~~~h 507 (577)
T 2ymu_A 430 WGVAFSPDDQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGH 507 (577)
T ss_dssp EEEEECTTSSEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEET-TSCEEEEEECC
T ss_pred EEEEECCCCCEEEEEcCCCEEEEEEC-CCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcC-CCCEEEEEeCC
Confidence 999999865 5778999999999996 677888999999999988 679999999999999999995 68899999999
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcceEEEEe
Q psy3053 878 EDAISCVAWDEKRKRLISGNLVGAPKLYATEFYLLYVLT 916 (917)
Q Consensus 878 ~~~V~slafSpdg~~LaSgs~DG~V~IWdl~~~ll~~Lt 916 (917)
...|++++|+|+|++||+++.||.|++||..+..+..+.
T Consensus 508 ~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~~~~~~~~~~ 546 (577)
T 2ymu_A 508 SSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLT 546 (577)
T ss_dssp SSCEEEEEECTTSSCEEEEETTSEEEEECTTSCEEEEEE
T ss_pred CCCEEEEEEcCCCCEEEEEECcCEEEEEeCCCCEEEEEc
Confidence 999999999999999999999999999999888777653
No 8
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=8e-40 Score=362.59 Aligned_cols=288 Identities=18% Similarity=0.235 Sum_probs=259.2
Q ss_pred eeeeccCCcceEEEEEeCC----CcEEEEEecCCceEEEeccCCce--eeeeeccccceEEEEEeCCCCEEEEEecccEE
Q psy3053 573 LHFCHSHKEAITAVAICGE----GISVASVGRDAMLKIHSLKTGRQ--ERSAVLSSMTLSSLCILPDNCTMLVGCWDSCV 646 (917)
Q Consensus 573 ~~~l~~H~~~Vtsv~fSpd----g~~Lasgs~Dg~I~IWd~~t~~~--~~~~~~~~~~V~sl~~spd~~~Lasgs~Dg~I 646 (917)
...+++|.+.|++++|+|+ +.+|+||+.|++|++|++.+++. ...+.+|...|.++++++++..+++|+.|++|
T Consensus 25 ~~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i 104 (321)
T 3ow8_A 25 FKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHI 104 (321)
T ss_dssp EEETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETTSEE
T ss_pred eeecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCCcE
Confidence 4566899999999999985 57899999999999999987654 44678899999999999999999999999999
Q ss_pred EEEEeccCeeeEEeccCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCC
Q psy3053 647 VIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNN 726 (917)
Q Consensus 647 ~Iwdl~tg~~i~~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~ 726 (917)
++||+.+++.+..+..|...+.+++|+|++++|++|+.||.|++|++.++ ........+...|.+++|+|+++
T Consensus 105 ~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~-------~~~~~~~~~~~~v~~~~~spdg~ 177 (321)
T 3ow8_A 105 RLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESG-------KKEYSLDTRGKFILSIAYSPDGK 177 (321)
T ss_dssp EEEETTTTEEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTC-------SEEEEEECSSSCEEEEEECTTSS
T ss_pred EEEECCCCCEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCC-------ceeEEecCCCceEEEEEECCCCC
Confidence 99999999999999999999999999999999999999999999999876 23444567788899999999999
Q ss_pred EEEEEECCCeEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCceEEEEEe
Q psy3053 727 QLAVGTEAGELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCNKVFEEKLLCLSWA 806 (917)
Q Consensus 727 ~Lasgs~dG~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~tg~~i~~~~~~~~i~~l~~s 806 (917)
+|++|+.||.|++||+++++.+..+. +|...|.+++|+|++++|++++.|+.|++||++++..
T Consensus 178 ~lasg~~dg~i~iwd~~~~~~~~~~~-~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~---------------- 240 (321)
T 3ow8_A 178 YLASGAIDGIINIFDIATGKLLHTLE-GHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANL---------------- 240 (321)
T ss_dssp EEEEEETTSCEEEEETTTTEEEEEEC-CCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCE----------------
T ss_pred EEEEEcCCCeEEEEECCCCcEEEEEc-ccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcce----------------
Confidence 99999999999999999999998887 8899999999999999999999999999998876532
Q ss_pred CCCEEEEEeCCCeEEEEECCCCEEEEEEecCCCceEEE--eecCCEEEEEeCCCeEEEEECcCCeEEEEecCCCCCEEEE
Q psy3053 807 GEEKVILGGALGMVYLVDLIQVQLLKQVRAHKDAVLSL--HFDNCTMLVGCWDSCVVIYDVECGRIVTELAGHEDAISCV 884 (917)
Q Consensus 807 ~~~~lv~gs~dG~I~vwdl~~~~~i~~l~~h~~~V~si--s~dg~~Lasgs~DG~I~Iwdl~tg~~l~~l~~h~~~V~sl 884 (917)
...+.+|...|.++ +|++.+|++|+.||+|++||+.+++++..+.+|.+.|.++
T Consensus 241 ------------------------~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v 296 (321)
T 3ow8_A 241 ------------------------AGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGV 296 (321)
T ss_dssp ------------------------EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEE
T ss_pred ------------------------eEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCCCcEEEE
Confidence 33456788888887 5689999999999999999999999999999999999999
Q ss_pred EEcCCCCEEEEEeCCCcEEEEecC
Q psy3053 885 AWDEKRKRLISGNLVGAPKLYATE 908 (917)
Q Consensus 885 afSpdg~~LaSgs~DG~V~IWdl~ 908 (917)
+|+|++++|++++.||.|++||..
T Consensus 297 ~~s~~g~~l~s~~~d~~i~vwd~p 320 (321)
T 3ow8_A 297 KYNGNGSKIVSVGDDQEIHIYDCP 320 (321)
T ss_dssp EECTTSSEEEEEETTCCEEEEECC
T ss_pred EECCCCCEEEEEeCCCeEEEEeCC
Confidence 999999999999999999999964
No 9
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.5e-39 Score=369.31 Aligned_cols=324 Identities=15% Similarity=0.198 Sum_probs=285.2
Q ss_pred eccCCcceEEEEEeCCCc-EEEEEecCCceEEEec----cCCc------eeeeeec----------cccceEEEEEeCCC
Q psy3053 576 CHSHKEAITAVAICGEGI-SVASVGRDAMLKIHSL----KTGR------QERSAVL----------SSMTLSSLCILPDN 634 (917)
Q Consensus 576 l~~H~~~Vtsv~fSpdg~-~Lasgs~Dg~I~IWd~----~t~~------~~~~~~~----------~~~~V~sl~~spd~ 634 (917)
...|.+.|++++|+|+|+ +|++|+.||.|++|++ .+++ ....+.. |...|.+++|+|++
T Consensus 41 ~~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 120 (425)
T 1r5m_A 41 EIVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDG 120 (425)
T ss_dssp EEEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTS
T ss_pred eeeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCC
Confidence 345679999999999999 9999999999999999 8887 3444443 57799999999999
Q ss_pred CEEEEEecccEEEEEEeccCeeeEEeccCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCC
Q psy3053 635 CTMLVGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDN 714 (917)
Q Consensus 635 ~~Lasgs~Dg~I~Iwdl~tg~~i~~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~ 714 (917)
++|++|+.||.|++|| .+++.+..+.+|...|++++|+|++++|++++.||.|++||+.++. .......+..
T Consensus 121 ~~l~~~~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~-------~~~~~~~~~~ 192 (425)
T 1r5m_A 121 NSIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGT-------VMQHFELKET 192 (425)
T ss_dssp SEEEEEETTSCEEEEE-TTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTE-------EEEEECCC--
T ss_pred CEEEEEeCCCeEEEEe-CCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCc-------EEEEeecccc
Confidence 9999999999999999 6788889999999999999999999999999999999999997762 2222223333
Q ss_pred c---------------eEEEEEeCCCCEEEEEECCCeEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEEeCCCe
Q psy3053 715 R---------------IKCLAISKDNNQLAVGTEAGELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCGNNCM 779 (917)
Q Consensus 715 ~---------------V~~l~~spdg~~Lasgs~dG~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~Dg~ 779 (917)
. +.+++|++++ .+++++.+|.|++||+.+++....+. .|...|.+++|+|+++.+++++.||.
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~i~~~d~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~d~~ 270 (425)
T 1r5m_A 193 GGSSINAENHSGDGSLGVDVEWVDDD-KFVIPGPKGAIFVYQITEKTPTGKLI-GHHGPISVLEFNDTNKLLLSASDDGT 270 (425)
T ss_dssp -------------CCCBSCCEEEETT-EEEEECGGGCEEEEETTCSSCSEEEC-CCSSCEEEEEEETTTTEEEEEETTSC
T ss_pred CccceeeccccCCcceeeEEEEcCCC-EEEEEcCCCeEEEEEcCCCceeeeec-cCCCceEEEEECCCCCEEEEEcCCCE
Confidence 3 8999999875 58889999999999999998888887 78999999999999999999999999
Q ss_pred EEEEECCCCeEEEEee-cCCceEEEEEeCCCEEEEEeCCCeEEEEECCCCEEEEEEecCCCceEEE--eecCCEEEEEeC
Q psy3053 780 LNVYDLTTGMQVCNKV-FEEKLLCLSWAGEEKVILGGALGMVYLVDLIQVQLLKQVRAHKDAVLSL--HFDNCTMLVGCW 856 (917)
Q Consensus 780 I~iwDl~tg~~i~~~~-~~~~i~~l~~s~~~~lv~gs~dG~I~vwdl~~~~~i~~l~~h~~~V~si--s~dg~~Lasgs~ 856 (917)
|++||+.+++...... +...+.+++|++++.+++++.+|.|++||+.+++.+..+..|...+.++ ++++++|++|+.
T Consensus 271 i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~ 350 (425)
T 1r5m_A 271 LRIWHGGNGNSQNCFYGHSQSIVSASWVGDDKVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQDGQKYAVAFM 350 (425)
T ss_dssp EEEECSSSBSCSEEECCCSSCEEEEEEETTTEEEEEETTSEEEEEETTTTEEEEEEECTTCCEEEEEECTTSSEEEEEET
T ss_pred EEEEECCCCccceEecCCCccEEEEEECCCCEEEEEeCCCcEEEEECCCCcEeEecccCCccEEEEEEcCCCCEEEEEEC
Confidence 9999999887766654 6788999999998899999999999999999999999999999999988 568999999999
Q ss_pred CCeEEEEECcCCe--------------------EEEEecCCCC--CEEEEEEcCCCCEEEEEeCCCcEEEEecCc
Q psy3053 857 DSCVVIYDVECGR--------------------IVTELAGHED--AISCVAWDEKRKRLISGNLVGAPKLYATEF 909 (917)
Q Consensus 857 DG~I~Iwdl~tg~--------------------~l~~l~~h~~--~V~slafSpdg~~LaSgs~DG~V~IWdl~~ 909 (917)
||.|++||+.+++ .+..+.+|.. .|++++|+|++++|++++.||.|++|++++
T Consensus 351 dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~g 425 (425)
T 1r5m_A 351 DGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKISVAYSLQEGSVVAIPG 425 (425)
T ss_dssp TSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEECTTSSEEEEEESSSCCEEEECCC
T ss_pred CCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccCCCceEEEEecCceEEEEeecC
Confidence 9999999999888 8999999976 999999999999999999999999999874
No 10
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=2.5e-39 Score=355.23 Aligned_cols=293 Identities=17% Similarity=0.236 Sum_probs=255.3
Q ss_pred ccceeeeccCCcceEEEEEeCCCcEEEEEecCCceEEEeccCCceeeeeeccccceEEEEEeCCCCEEEEEecccEEEEE
Q psy3053 570 LEPLHFCHSHKEAITAVAICGEGISVASVGRDAMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTMLVGCWDSCVVIY 649 (917)
Q Consensus 570 l~~~~~l~~H~~~Vtsv~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~~~~~~~~V~sl~~spd~~~Lasgs~Dg~I~Iw 649 (917)
++...++.+|.+.|++++|+|+|++|++|+.||+|++||+.++..++.+..|..+|.+++|+|++++|++|+.|++|++|
T Consensus 3 l~~~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vw 82 (304)
T 2ynn_A 3 LDIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVF 82 (304)
T ss_dssp CCCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEE
T ss_pred ceeEEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEE
Confidence 45677899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeccCeeeEEeccCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeC-CCCEE
Q psy3053 650 DVECGRIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISK-DNNQL 728 (917)
Q Consensus 650 dl~tg~~i~~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp-dg~~L 728 (917)
|+.+++.+..+.+|.+.|++++|+|++++|++|+.||+|++||+.++. .......+|...|.+++|+| ++..+
T Consensus 83 d~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~------~~~~~~~~h~~~v~~v~~~p~~~~~l 156 (304)
T 2ynn_A 83 NYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNW------ALEQTFEGHEHFVMCVAFNPKDPSTF 156 (304)
T ss_dssp ETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTT------EEEEEECCCCSCEEEEEECTTCTTEE
T ss_pred ECCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCc------chhhhhcccCCcEEEEEECCCCCCEE
Confidence 999999999999999999999999999999999999999999987641 12334568999999999999 67899
Q ss_pred EEEECCCeEEEEECCCCeeeEEecCCCCCCeEEEEEec--CCCEEEEEeCCCeEEEEECCCCeEEEEeecCCceEEEEEe
Q psy3053 729 AVGTEAGELIIWSLENHLMTQQLSDDINASVNGVLFSE--DGCRVLSCGNNCMLNVYDLTTGMQVCNKVFEEKLLCLSWA 806 (917)
Q Consensus 729 asgs~dG~I~iwDl~~~~~~~~l~~~h~~~V~~v~fsp--dg~~L~s~s~Dg~I~iwDl~tg~~i~~~~~~~~i~~l~~s 806 (917)
++|+.||+|++||++++.....+...+...+..+.|+| ++.+|++++.|++|++||++++
T Consensus 157 ~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~------------------ 218 (304)
T 2ynn_A 157 ASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTK------------------ 218 (304)
T ss_dssp EEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTT------------------
T ss_pred EEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCC------------------
Confidence 99999999999999988777766656777888888876 5566777777766666666544
Q ss_pred CCCEEEEEeCCCeEEEEECCCCEEEEEEecCCCceEEE--eecCCEEEEEeCCCeEEEEECcCCeEEEEecCCCCCEEEE
Q psy3053 807 GEEKVILGGALGMVYLVDLIQVQLLKQVRAHKDAVLSL--HFDNCTMLVGCWDSCVVIYDVECGRIVTELAGHEDAISCV 884 (917)
Q Consensus 807 ~~~~lv~gs~dG~I~vwdl~~~~~i~~l~~h~~~V~si--s~dg~~Lasgs~DG~I~Iwdl~tg~~l~~l~~h~~~V~sl 884 (917)
+++..+.+|...|.++ +|++.+|++|+.||+|++||+.+++.+..+..|...+.++
T Consensus 219 ----------------------~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~ 276 (304)
T 2ynn_A 219 ----------------------SCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCI 276 (304)
T ss_dssp ----------------------EEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCSSSSEEEE
T ss_pred ----------------------ccceeeCCCCCCEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeeccCCCccEEEE
Confidence 4455667888888877 6688999999999999999999999999999999999999
Q ss_pred EEcCCCC--EEEEEeCCCcEEEEecCc
Q psy3053 885 AWDEKRK--RLISGNLVGAPKLYATEF 909 (917)
Q Consensus 885 afSpdg~--~LaSgs~DG~V~IWdl~~ 909 (917)
+|+|++. ++++|+.|| +.+|++..
T Consensus 277 ~~~~~~~~~~~asg~~~g-~~~~~~~~ 302 (304)
T 2ynn_A 277 ATHPTGRKNYIASGFDNG-FTVLSLGN 302 (304)
T ss_dssp EECTTCGGGCEEEEETTE-EEEEECC-
T ss_pred EECCCCCceEEEEecCCc-eEEEEecc
Confidence 9999875 577776665 77887754
No 11
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=6.2e-39 Score=360.31 Aligned_cols=290 Identities=18% Similarity=0.288 Sum_probs=258.0
Q ss_pred cceeeeccCCcceEEEEEeCCCcEEEEEecCCceEEEeccCCceeeeeeccccceEEEEEeCCCCEEEEEecccEEEEEE
Q psy3053 571 EPLHFCHSHKEAITAVAICGEGISVASVGRDAMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTMLVGCWDSCVVIYD 650 (917)
Q Consensus 571 ~~~~~l~~H~~~Vtsv~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~~~~~~~~V~sl~~spd~~~Lasgs~Dg~I~Iwd 650 (917)
+....+.+|.+.|++++|+|++++|+||+.||+|++||..+++....+..+...|.+++|+|++..+++|+.|+.+++|+
T Consensus 55 ~~~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~ 134 (354)
T 2pbi_B 55 KTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYP 134 (354)
T ss_dssp CEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEE
T ss_pred EEEEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEE
Confidence 45678999999999999999999999999999999999999999988999999999999999999999999999999999
Q ss_pred eccC------eeeEEeccCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeC-
Q psy3053 651 VECG------RIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISK- 723 (917)
Q Consensus 651 l~tg------~~i~~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp- 723 (917)
+... .....+.+|.+.|.+++|+|++..|++|+.|++|++||+.++ .......+|...|.+++++|
T Consensus 135 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~-------~~~~~~~~h~~~v~~~~~~~~ 207 (354)
T 2pbi_B 135 LTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESG-------QLLQSFHGHGADVLCLDLAPS 207 (354)
T ss_dssp CCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTC-------CEEEEEECCSSCEEEEEECCC
T ss_pred EeccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCC-------eEEEEEcCCCCCeEEEEEEeC
Confidence 8653 345667789999999999999999999999999999999876 34455678999999999988
Q ss_pred -CCCEEEEEECCCeEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCceEE
Q psy3053 724 -DNNQLAVGTEAGELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCNKVFEEKLLC 802 (917)
Q Consensus 724 -dg~~Lasgs~dG~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~tg~~i~~~~~~~~i~~ 802 (917)
+++.+++|+.||.|++||+++++.+..+. .|...|.+++|+|++..+++++.|++|++||++++..+......
T Consensus 208 ~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~-~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~----- 281 (354)
T 2pbi_B 208 ETGNTFVSGGCDKKAMVWDMRSGQCVQAFE-THESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKE----- 281 (354)
T ss_dssp SSCCEEEEEETTSCEEEEETTTCCEEEEEC-CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCT-----
T ss_pred CCCCEEEEEeCCCeEEEEECCCCcEEEEec-CCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCC-----
Confidence 57899999999999999999999988887 89999999999999999999999999999999876543221110
Q ss_pred EEEeCCCEEEEEeCCCeEEEEECCCCEEEEEEecCCCceEEE--eecCCEEEEEeCCCeEEEEECcCCeEEEEecCCCCC
Q psy3053 803 LSWAGEEKVILGGALGMVYLVDLIQVQLLKQVRAHKDAVLSL--HFDNCTMLVGCWDSCVVIYDVECGRIVTELAGHEDA 880 (917)
Q Consensus 803 l~~s~~~~lv~gs~dG~I~vwdl~~~~~i~~l~~h~~~V~si--s~dg~~Lasgs~DG~I~Iwdl~tg~~l~~l~~h~~~ 880 (917)
.+...+.++ +++++++++|+.||.|++||+.+++.+..+.+|.+.
T Consensus 282 ---------------------------------~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~~ 328 (354)
T 2pbi_B 282 ---------------------------------SIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENR 328 (354)
T ss_dssp ---------------------------------TCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSC
T ss_pred ---------------------------------CcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEEECCCCc
Confidence 112234444 668999999999999999999999999999999999
Q ss_pred EEEEEEcCCCCEEEEEeCCCcEEEEe
Q psy3053 881 ISCVAWDEKRKRLISGNLVGAPKLYA 906 (917)
Q Consensus 881 V~slafSpdg~~LaSgs~DG~V~IWd 906 (917)
|++++|+|+|++|++|+.||+|++|+
T Consensus 329 v~~l~~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 329 VSTLRVSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp EEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred EEEEEECCCCCEEEEEcCCCCEEecC
Confidence 99999999999999999999999996
No 12
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=9.9e-39 Score=350.38 Aligned_cols=291 Identities=22% Similarity=0.355 Sum_probs=261.1
Q ss_pred cceeeeccCCcceEEEEEeCCCcEEEEEecCCceEEEeccCCceeeeeeccccceEEEEEeCCCCEEEEEecccEEEEEE
Q psy3053 571 EPLHFCHSHKEAITAVAICGEGISVASVGRDAMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTMLVGCWDSCVVIYD 650 (917)
Q Consensus 571 ~~~~~l~~H~~~Vtsv~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~~~~~~~~V~sl~~spd~~~Lasgs~Dg~I~Iwd 650 (917)
.....+.+|.+.|++++|+|+|++|++|+.||.|++|+..+++....+..|...|.+++|+|++++|++|+.||.|++||
T Consensus 14 ~~~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd 93 (312)
T 4ery_A 14 ALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWD 93 (312)
T ss_dssp EEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred eeEEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEEE
Confidence 45677899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccCeeeEEeccCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEE
Q psy3053 651 VECGRIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAV 730 (917)
Q Consensus 651 l~tg~~i~~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Las 730 (917)
+.+++.+..+.+|...|.+++|+|++++|++|+.||+|++||+.++ ........|...|.+++|+|+++.+++
T Consensus 94 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~l~~ 166 (312)
T 4ery_A 94 VSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG-------KCLKTLPAHSDPVSAVHFNRDGSLIVS 166 (312)
T ss_dssp TTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTC-------CEEEEECCCSSCEEEEEECTTSSEEEE
T ss_pred CCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC-------EEEEEecCCCCcEEEEEEcCCCCEEEE
Confidence 9999999999999999999999999999999999999999999876 234455678899999999999999999
Q ss_pred EECCCeEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCceEEEEEeCCCE
Q psy3053 731 GTEAGELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCNKVFEEKLLCLSWAGEEK 810 (917)
Q Consensus 731 gs~dG~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~tg~~i~~~~~~~~i~~l~~s~~~~ 810 (917)
|+.||.|++||+++++.+..+...+...+..++|+|+++++++++.|+.|++||+.+++.+..
T Consensus 167 ~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~----------------- 229 (312)
T 4ery_A 167 SSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT----------------- 229 (312)
T ss_dssp EETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEE-----------------
T ss_pred EeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEE-----------------
Confidence 999999999999999988887766778899999999999999999999999999887755432
Q ss_pred EEEEeCCCeEEEEECCCCEEEEEEecCCCce----EEE-eecCCEEEEEeCCCeEEEEECcCCeEEEEecCCCCCEEEEE
Q psy3053 811 VILGGALGMVYLVDLIQVQLLKQVRAHKDAV----LSL-HFDNCTMLVGCWDSCVVIYDVECGRIVTELAGHEDAISCVA 885 (917)
Q Consensus 811 lv~gs~dG~I~vwdl~~~~~i~~l~~h~~~V----~si-s~dg~~Lasgs~DG~I~Iwdl~tg~~l~~l~~h~~~V~sla 885 (917)
+.+|...+ ... .+++.++++|+.||.|++||+.+++.+..+.+|.+.|.+++
T Consensus 230 -----------------------~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~ 286 (312)
T 4ery_A 230 -----------------------YTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTA 286 (312)
T ss_dssp -----------------------ECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEEEECCCSSCEEEEE
T ss_pred -----------------------EEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhhhhhccCCcEEEEe
Confidence 22232221 112 24688999999999999999999999999999999999999
Q ss_pred EcCCCCEEEEEe--CCCcEEEEecC
Q psy3053 886 WDEKRKRLISGN--LVGAPKLYATE 908 (917)
Q Consensus 886 fSpdg~~LaSgs--~DG~V~IWdl~ 908 (917)
|+|++..|++++ .||.|++|+.+
T Consensus 287 ~~p~~~~l~s~~~~~d~~i~~W~~d 311 (312)
T 4ery_A 287 CHPTENIIASAALENDKTIKLWKSD 311 (312)
T ss_dssp ECSSSSEEEEEECTTTCCEEEEECC
T ss_pred ecCcCCceEEEEccCCccEEEecCC
Confidence 999999999997 69999999975
No 13
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=1.6e-38 Score=351.33 Aligned_cols=299 Identities=18% Similarity=0.277 Sum_probs=255.8
Q ss_pred ccceeeeccCCcceEEEEEeCCC-cEEEEEecCCceEEEeccC-----CceeeeeeccccceEEEEEeCCCCEEEEEecc
Q psy3053 570 LEPLHFCHSHKEAITAVAICGEG-ISVASVGRDAMLKIHSLKT-----GRQERSAVLSSMTLSSLCILPDNCTMLVGCWD 643 (917)
Q Consensus 570 l~~~~~l~~H~~~Vtsv~fSpdg-~~Lasgs~Dg~I~IWd~~t-----~~~~~~~~~~~~~V~sl~~spd~~~Lasgs~D 643 (917)
+.+..++.+|.+.|++++|+|++ ++|++|+.|++|++|++.+ +..+..+.+|...|.+++|+|+++++++|+.|
T Consensus 7 ~~l~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D 86 (319)
T 3frx_A 7 LVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWD 86 (319)
T ss_dssp EEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETT
T ss_pred EEEEEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCC
Confidence 45667899999999999999965 8999999999999999864 33467788999999999999999999999999
Q ss_pred cEEEEEEeccCeeeEEeccCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeC
Q psy3053 644 SCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISK 723 (917)
Q Consensus 644 g~I~Iwdl~tg~~i~~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp 723 (917)
++|++||+.+++.+..+.+|.+.|.+++|+|++.+|++|+.|++|++||+... ......+|...|.+++++|
T Consensus 87 ~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~~--------~~~~~~~h~~~v~~~~~~~ 158 (319)
T 3frx_A 87 KTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQ--------CLATLLGHNDWVSQVRVVP 158 (319)
T ss_dssp SEEEEEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTSC--------EEEEECCCSSCEEEEEECC
T ss_pred CEEEEEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC--------eEEEEeccCCcEEEEEEcc
Confidence 99999999999999999999999999999999999999999999999998643 4556678999999999998
Q ss_pred C------CCEEEEEECCCeEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeEEEEeecC
Q psy3053 724 D------NNQLAVGTEAGELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCNKVFE 797 (917)
Q Consensus 724 d------g~~Lasgs~dG~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~tg~~i~~~~~~ 797 (917)
. +..+++|+.||.|++||+++++....+. +|...|.+++|+|+|++|++++.||.|++||+.+++.+......
T Consensus 159 ~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~-~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 237 (319)
T 3frx_A 159 NEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFI-GHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQ 237 (319)
T ss_dssp C------CCEEEEEETTSCEEEEETTTTEEEEEEC-CCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECC
T ss_pred CCCCCCCccEEEEEeCCCEEEEEECCcchhheeec-CCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCC
Confidence 5 4589999999999999999999888887 89999999999999999999999999999999999988888888
Q ss_pred CceEEEEEeCCCEEEEEeCCCeEEEEECCCCEEEEEEecCCCceEEEeecCCEEEEEeCCCeEEEEECcCCeEEEEecCC
Q psy3053 798 EKLLCLSWAGEEKVILGGALGMVYLVDLIQVQLLKQVRAHKDAVLSLHFDNCTMLVGCWDSCVVIYDVECGRIVTELAGH 877 (917)
Q Consensus 798 ~~i~~l~~s~~~~lv~gs~dG~I~vwdl~~~~~i~~l~~h~~~V~sis~dg~~Lasgs~DG~I~Iwdl~tg~~l~~l~~h 877 (917)
..+.+++|+|++.+++++.++.+++|++..+..+..+..+... ....|
T Consensus 238 ~~v~~~~~sp~~~~la~~~~~~i~v~~~~~~~~~~~~~~~~~~--------------------------------~~~~~ 285 (319)
T 3frx_A 238 DEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAG--------------------------------YSKAA 285 (319)
T ss_dssp SCEEEEEECSSSSEEEEEETTEEEEEEETTEEEEEEECCCCTT--------------------------------CCGGG
T ss_pred CcEEEEEEcCCCCEEEEEcCCCcEEEEeCcCeeeeccCccccc--------------------------------cccCc
Confidence 8888888888766665555566666666554443333211100 01235
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCCcEEEEecCc
Q psy3053 878 EDAISCVAWDEKRKRLISGNLVGAPKLYATEF 909 (917)
Q Consensus 878 ~~~V~slafSpdg~~LaSgs~DG~V~IWdl~~ 909 (917)
...+.+++|+|||++|++|+.||.|++|++.+
T Consensus 286 ~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~t 317 (319)
T 3frx_A 286 EPHAVSLAWSADGQTLFAGYTDNVIRVWQVMT 317 (319)
T ss_dssp CCCEEEEEECTTSSEEEEEETTSCEEEEEEEE
T ss_pred CcceeEEEECCCCCEEEEeecCceEEEEEEee
Confidence 66788999999999999999999999999864
No 14
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=4.5e-39 Score=364.76 Aligned_cols=306 Identities=19% Similarity=0.232 Sum_probs=258.3
Q ss_pred cccceeeeccCCcceEEEEEeCCCcEEEEEecCCceEEEeccCCceeeeeeccccceEEEEEeCCCCEEEEEecccEEEE
Q psy3053 569 ILEPLHFCHSHKEAITAVAICGEGISVASVGRDAMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTMLVGCWDSCVVI 648 (917)
Q Consensus 569 ~l~~~~~l~~H~~~Vtsv~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~~~~~~~~V~sl~~spd~~~Lasgs~Dg~I~I 648 (917)
...+..++.+|.+.|++++|+|+|++|+||+.||+|++||+.+++....+..|...|.+++|+|++++|++|+.|+.+++
T Consensus 55 ~~~~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~i 134 (380)
T 3iz6_a 55 DLVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSI 134 (380)
T ss_dssp CCEEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEE
T ss_pred eeEEeecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEE
Confidence 34567889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeccCe-------eeEEeccCCCceeEEEecCC-CCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEE
Q psy3053 649 YDVECGR-------IVTELAGHEDAISCVAWDEK-RKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLA 720 (917)
Q Consensus 649 wdl~tg~-------~i~~l~~H~~~Vt~l~~spd-~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~ 720 (917)
|++.+.. ....+.+|.+.|.+++|+|+ +..|++|+.|++|++||+.++...... ......+|...|.+++
T Consensus 135 w~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~--~~~~~~~h~~~v~~~~ 212 (380)
T 3iz6_a 135 FNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIF--GSEFPSGHTADVLSLS 212 (380)
T ss_dssp EECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEE--CCCSSSSCCSCEEEEE
T ss_pred EECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEe--ecccCCCCccCeEEEE
Confidence 9987532 34567899999999999996 457999999999999999876211000 0001246889999999
Q ss_pred EeC-CCCEEEEEECCCeEEEEECC-CCeeeEEecCCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeEEEEeecCC
Q psy3053 721 ISK-DNNQLAVGTEAGELIIWSLE-NHLMTQQLSDDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCNKVFEE 798 (917)
Q Consensus 721 ~sp-dg~~Lasgs~dG~I~iwDl~-~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~tg~~i~~~~~~~ 798 (917)
+++ +++++++|+.||.|++||++ .+..+..+. +|.+.|.+++|+|+|..|++++.||+|++||++++..+.......
T Consensus 213 ~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~-~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~ 291 (380)
T 3iz6_a 213 INSLNANMFISGSCDTTVRLWDLRITSRAVRTYH-GHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREP 291 (380)
T ss_dssp ECSSSCCEEEEEETTSCEEEEETTTTCCCCEEEC-CCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCC
T ss_pred eecCCCCEEEEEECCCeEEEEECCCCCcceEEEC-CcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEecccc
Confidence 987 78999999999999999998 446667776 899999999999999999999999999999999887654322110
Q ss_pred ceEEEEEeCCCEEEEEeCCCeEEEEECCCCEEEEEEecCCCceEEE--eecCCEEEEEeCCCeEEEEECcCCeEEEEe--
Q psy3053 799 KLLCLSWAGEEKVILGGALGMVYLVDLIQVQLLKQVRAHKDAVLSL--HFDNCTMLVGCWDSCVVIYDVECGRIVTEL-- 874 (917)
Q Consensus 799 ~i~~l~~s~~~~lv~gs~dG~I~vwdl~~~~~i~~l~~h~~~V~si--s~dg~~Lasgs~DG~I~Iwdl~tg~~l~~l-- 874 (917)
.. ...+...|+++ +++|+++++|+.||.|++||+.+++.+..+
T Consensus 292 ~~---------------------------------~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~ 338 (380)
T 3iz6_a 292 DR---------------------------------NDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGT 338 (380)
T ss_dssp SS---------------------------------SCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECC
T ss_pred cc---------------------------------cccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEec
Confidence 00 00122234444 778999999999999999999999988877
Q ss_pred --cCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcc
Q psy3053 875 --AGHEDAISCVAWDEKRKRLISGNLVGAPKLYATEFY 910 (917)
Q Consensus 875 --~~h~~~V~slafSpdg~~LaSgs~DG~V~IWdl~~~ 910 (917)
.+|.+.|++++|+|+|.+|+||+.||+|++|++.+.
T Consensus 339 ~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~~~ 376 (380)
T 3iz6_a 339 LQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFSGH 376 (380)
T ss_dssp SCSSCCCCCCEEEECSSSSEEEEECTTSCEEEEECCSS
T ss_pred ccCCCCCceEEEEECCCCCEEEEeeCCCCEEEEecCCC
Confidence 689999999999999999999999999999999864
No 15
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=2.2e-38 Score=354.26 Aligned_cols=312 Identities=18% Similarity=0.242 Sum_probs=254.9
Q ss_pred cccceeeeccCCc-ceEEEEEeCCCcEEEEEecCCceEEEeccCCceee---eeeccccceEEEEEeCCCCEEEEEeccc
Q psy3053 569 ILEPLHFCHSHKE-AITAVAICGEGISVASVGRDAMLKIHSLKTGRQER---SAVLSSMTLSSLCILPDNCTMLVGCWDS 644 (917)
Q Consensus 569 ~l~~~~~l~~H~~-~Vtsv~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~---~~~~~~~~V~sl~~spd~~~Lasgs~Dg 644 (917)
.++++..+.+|.+ .|.+++|+|+|++||+|+.|++|++|++.++.... ...+|...|.+++|+|++++|++|+.|+
T Consensus 4 ~~~~~~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~ 83 (345)
T 3fm0_A 4 SLVLLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDA 83 (345)
T ss_dssp CEEEEEEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTS
T ss_pred cEEEeeeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCC
Confidence 3456788999998 99999999999999999999999999998876432 2357889999999999999999999999
Q ss_pred EEEEEEeccC--eeeEEeccCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEe
Q psy3053 645 CVVIYDVECG--RIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAIS 722 (917)
Q Consensus 645 ~I~Iwdl~tg--~~i~~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~s 722 (917)
++++|++.++ +.+..+.+|.+.|.+++|+|++++|++|+.|++|++||+.... .........+|...|.+++|+
T Consensus 84 ~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~----~~~~~~~~~~h~~~v~~~~~~ 159 (345)
T 3fm0_A 84 TTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEED----EYECVSVLNSHTQDVKHVVWH 159 (345)
T ss_dssp CEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTS----CEEEEEEECCCCSCEEEEEEC
T ss_pred cEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCC----CeEEEEEecCcCCCeEEEEEC
Confidence 9999999876 4577899999999999999999999999999999999987651 112234456789999999999
Q ss_pred CCCCEEEEEECCCeEEEEECCCCee--eEEecCCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCce
Q psy3053 723 KDNNQLAVGTEAGELIIWSLENHLM--TQQLSDDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCNKVFEEKL 800 (917)
Q Consensus 723 pdg~~Lasgs~dG~I~iwDl~~~~~--~~~l~~~h~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~tg~~i~~~~~~~~i 800 (917)
|++++|++|+.||.|++||.+++.. ...+. +|...|.+++|+|+|++|++++.|++|++||...... ...+
T Consensus 160 p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~-~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~------~~~~ 232 (345)
T 3fm0_A 160 PSQELLASASYDDTVKLYREEEDDWVCCATLE-GHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGN------EQGV 232 (345)
T ss_dssp SSSSCEEEEETTSCEEEEEEETTEEEEEEEEC-CCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTC------TTCC
T ss_pred CCCCEEEEEeCCCcEEEEEecCCCEEEEEEec-CCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCC------Cccc
Confidence 9999999999999999999988753 34555 8999999999999999999999999999999632210 0000
Q ss_pred EEEEEeCCCEEEEEeCCCeEEEEECCCCEEEEEEec-CCCceEEE--eecCCEEEEEeCCCeEEEEECcCCe--------
Q psy3053 801 LCLSWAGEEKVILGGALGMVYLVDLIQVQLLKQVRA-HKDAVLSL--HFDNCTMLVGCWDSCVVIYDVECGR-------- 869 (917)
Q Consensus 801 ~~l~~s~~~~lv~gs~dG~I~vwdl~~~~~i~~l~~-h~~~V~si--s~dg~~Lasgs~DG~I~Iwdl~tg~-------- 869 (917)
.+ .+.+ ...+++..+.+ |...|.++ ++++..+++++.|+.|++|+...+.
T Consensus 233 ~~-----------~~~~--------~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~ 293 (345)
T 3fm0_A 233 AC-----------SGSD--------PSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFS 293 (345)
T ss_dssp CC-----------C-----------CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEE
T ss_pred ee-----------eccC--------CccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEE
Confidence 00 0000 11233444544 88889888 4578899999999999999986542
Q ss_pred -EEEEecCCCCCEEEEEEcCCC-CEEEEEeCCCcEEEEecCcc
Q psy3053 870 -IVTELAGHEDAISCVAWDEKR-KRLISGNLVGAPKLYATEFY 910 (917)
Q Consensus 870 -~l~~l~~h~~~V~slafSpdg-~~LaSgs~DG~V~IWdl~~~ 910 (917)
......+|...|++++|+|++ .+||||+.||+|++|++...
T Consensus 294 ~~~~~~~~h~~~V~~v~~~p~~~~~laS~s~Dg~v~~W~~~~~ 336 (345)
T 3fm0_A 294 LTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQRP 336 (345)
T ss_dssp EEEEETTSSSSCEEEEEECSSSTTEEEEEETTSCEEEEEECC-
T ss_pred EEeeecccccCcEeEeEEeCCCceEEEEcCCCCcEEEEEecCC
Confidence 123346899999999999998 59999999999999999754
No 16
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=6.5e-38 Score=344.62 Aligned_cols=322 Identities=15% Similarity=0.209 Sum_probs=283.5
Q ss_pred cCCcceEEEEEeCCCcEEEEEecCCceEEEeccCCceeeeeeccccceEEEEEeCCCCEEEEEecccEEEEEEeccCeee
Q psy3053 578 SHKEAITAVAICGEGISVASVGRDAMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTMLVGCWDSCVVIYDVECGRIV 657 (917)
Q Consensus 578 ~H~~~Vtsv~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~~~~~~~~V~sl~~spd~~~Lasgs~Dg~I~Iwdl~tg~~i 657 (917)
.|.++|.+++|+|||+.++++..++.+..|.............|...|.+++|+|+++++++++ ||.|++|++.+++..
T Consensus 7 ~~~~~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~ 85 (337)
T 1gxr_A 7 MGSKPAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNK 85 (337)
T ss_dssp EEEEECCEEEECSSSCEEECCCCTTSSSSTTCCSEEEEEEEECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCC
T ss_pred ccCCceeEEEECCCCCEEEeecCCCcEeccccCCccccceeccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCce
Confidence 3567899999999999999988888777776655545555557899999999999999999999 999999999877533
Q ss_pred ---EEec--cCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEEEE
Q psy3053 658 ---TELA--GHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGT 732 (917)
Q Consensus 658 ---~~l~--~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs 732 (917)
..+. +|...|++++|+|++++|++++.||.|++||+.++. .........|...+.+++|+|+++.+++++
T Consensus 86 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~-----~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 160 (337)
T 1gxr_A 86 SPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPT-----PRIKAELTSSAPACYALAISPDSKVCFSCC 160 (337)
T ss_dssp SCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC-------EEEEEEECSSSCEEEEEECTTSSEEEEEE
T ss_pred eeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCC-----cceeeecccCCCceEEEEECCCCCEEEEEe
Confidence 3333 799999999999999999999999999999998752 113344567888999999999999999999
Q ss_pred CCCeEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCceEEEEEeCCC-EE
Q psy3053 733 EAGELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCNKVFEEKLLCLSWAGEE-KV 811 (917)
Q Consensus 733 ~dG~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~tg~~i~~~~~~~~i~~l~~s~~~-~l 811 (917)
.||.|++||+++++....+. .|...+.+++|+|+++.+++++.||.|++||+++++.+....+...+.++++++++ .+
T Consensus 161 ~dg~v~~~d~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~v~~~~~s~~~~~l 239 (337)
T 1gxr_A 161 SDGNIAVWDLHNQTLVRQFQ-GHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWL 239 (337)
T ss_dssp TTSCEEEEETTTTEEEEEEC-CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECTTSSEE
T ss_pred CCCcEEEEeCCCCceeeeee-cccCceEEEEECCCCCEEEEEecCCcEEEEECCCCceEeeecCCCceEEEEECCCCCEE
Confidence 99999999999999988887 78999999999999999999999999999999999999988999999999999865 57
Q ss_pred EEEeCCCeEEEEECCCCEEEEEEecCCCceEEE--eecCCEEEEEeCCCeEEEEECcCCeEEEEecCCCCCEEEEEEcCC
Q psy3053 812 ILGGALGMVYLVDLIQVQLLKQVRAHKDAVLSL--HFDNCTMLVGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEK 889 (917)
Q Consensus 812 v~gs~dG~I~vwdl~~~~~i~~l~~h~~~V~si--s~dg~~Lasgs~DG~I~Iwdl~tg~~l~~l~~h~~~V~slafSpd 889 (917)
++++.+|.|++||+.+++.. .+..|...|.++ +++++++++++.||.|++||+.+++.+... .|...|.+++|+|+
T Consensus 240 ~~~~~~~~i~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~-~~~~~v~~~~~s~~ 317 (337)
T 1gxr_A 240 AVGMESSNVEVLHVNKPDKY-QLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS-KESSSVLSCDISVD 317 (337)
T ss_dssp EEEETTSCEEEEETTSSCEE-EECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE-ECSSCEEEEEECTT
T ss_pred EEEcCCCcEEEEECCCCCeE-EEcCCccceeEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEe-cCCCcEEEEEECCC
Confidence 78889999999999988754 567899999998 558999999999999999999999988554 48899999999999
Q ss_pred CCEEEEEeCCCcEEEEecC
Q psy3053 890 RKRLISGNLVGAPKLYATE 908 (917)
Q Consensus 890 g~~LaSgs~DG~V~IWdl~ 908 (917)
+++|++++.||.|++|++-
T Consensus 318 ~~~l~~~~~dg~i~iw~~~ 336 (337)
T 1gxr_A 318 DKYIVTGSGDKKATVYEVI 336 (337)
T ss_dssp SCEEEEEETTSCEEEEEEE
T ss_pred CCEEEEecCCCeEEEEEEe
Confidence 9999999999999999973
No 17
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=4e-37 Score=355.44 Aligned_cols=322 Identities=20% Similarity=0.325 Sum_probs=292.0
Q ss_pred cceeeeccCCcceEEEEEeCCCcEEEEEecCCceEEEeccCCceeeeeeccccceEEEEEeCCCCEEEEEecccEEEEEE
Q psy3053 571 EPLHFCHSHKEAITAVAICGEGISVASVGRDAMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTMLVGCWDSCVVIYD 650 (917)
Q Consensus 571 ~~~~~l~~H~~~Vtsv~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~~~~~~~~V~sl~~spd~~~Lasgs~Dg~I~Iwd 650 (917)
+....+.+|.+.|.. +++++|+++++|+.||+|++||+.+++.+..+.+|...|.+++++ ++.+++|+.||+|++||
T Consensus 109 ~~~~~l~~h~~~v~~-~~~~~g~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd 185 (445)
T 2ovr_B 109 KSPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWN 185 (445)
T ss_dssp CCCEEEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEE
T ss_pred ceeEEecccCCCcEE-EEEEcCCEEEEEECCCcEEEEECCCCcEEEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEE
Confidence 345678999987643 356678999999999999999999999999999999999999997 56999999999999999
Q ss_pred eccCeeeEEeccCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEE
Q psy3053 651 VECGRIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAV 730 (917)
Q Consensus 651 l~tg~~i~~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Las 730 (917)
+.+++.+..+.+|...|.+++++ ++.+++|+.||+|++||+.++ .......+|...|.++++ +++.+++
T Consensus 186 ~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~-------~~~~~~~~~~~~v~~~~~--~~~~l~~ 254 (445)
T 2ovr_B 186 AETGECIHTLYGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETG-------QCLHVLMGHVAAVRCVQY--DGRRVVS 254 (445)
T ss_dssp TTTTEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEESSSC-------CEEEEEECCSSCEEEEEE--CSSCEEE
T ss_pred CCcCcEEEEECCCCCcEEEEEec--CCEEEEEeCCCEEEEEECCCC-------cEEEEEcCCcccEEEEEE--CCCEEEE
Confidence 99999999999999999999996 478999999999999999876 344456688999999999 7889999
Q ss_pred EECCCeEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeEEEEee-cCCceEEEEEeCCC
Q psy3053 731 GTEAGELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCNKV-FEEKLLCLSWAGEE 809 (917)
Q Consensus 731 gs~dG~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~tg~~i~~~~-~~~~i~~l~~s~~~ 809 (917)
|+.||.|++||+++++.+..+. .|...|.+++| ++..+++++.||.|++||+++++.+.... +...+.++.++++
T Consensus 255 ~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~- 330 (445)
T 2ovr_B 255 GAYDFMVKVWDPETETCLHTLQ-GHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDN- 330 (445)
T ss_dssp EETTSCEEEEEGGGTEEEEEEC-CCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEETT-
T ss_pred EcCCCEEEEEECCCCcEeEEec-CCCCceEEEEE--CCCEEEEEeCCCeEEEEECCCCCEEEEEcCCcccEEEEEEeCC-
Confidence 9999999999999999999887 88999999999 88999999999999999999998887654 5567888998876
Q ss_pred EEEEEeCCCeEEEEECCCCEEEEEEec---CCCceEEEeecCCEEEEEeCCCeEEEEECcCCeEEEEe-----cCCCCCE
Q psy3053 810 KVILGGALGMVYLVDLIQVQLLKQVRA---HKDAVLSLHFDNCTMLVGCWDSCVVIYDVECGRIVTEL-----AGHEDAI 881 (917)
Q Consensus 810 ~lv~gs~dG~I~vwdl~~~~~i~~l~~---h~~~V~sis~dg~~Lasgs~DG~I~Iwdl~tg~~l~~l-----~~h~~~V 881 (917)
.+++|+.||.|++||+.+++.+..+.+ |...|.+++++++++++|+.||.|++||+.+++.+..+ .+|.+.|
T Consensus 331 ~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v 410 (445)
T 2ovr_B 331 ILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVV 410 (445)
T ss_dssp EEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEECSSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEE
T ss_pred EEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEECCCEEEEEeCCCeEEEEECCCCceeeeeeccccCCCCceE
Confidence 999999999999999999999999986 88999999999999999999999999999999999888 4788999
Q ss_pred EEEEEcCCCCEEEEEeCCCc----EEEEecCcc
Q psy3053 882 SCVAWDEKRKRLISGNLVGA----PKLYATEFY 910 (917)
Q Consensus 882 ~slafSpdg~~LaSgs~DG~----V~IWdl~~~ 910 (917)
++++|+|++.++++|+.||+ |.+||++..
T Consensus 411 ~~~~~s~~~~~la~~~~dg~~~~~l~v~df~~~ 443 (445)
T 2ovr_B 411 WRIRASNTKLVCAVGSRNGTEETKLLVLDFDVD 443 (445)
T ss_dssp EEEEECSSEEEEEEECSSSSSCCEEEEEECCCC
T ss_pred EEEEecCCEEEEEEcccCCCCccEEEEEECCCC
Confidence 99999999999999999998 999999753
No 18
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=1.7e-37 Score=353.47 Aligned_cols=296 Identities=23% Similarity=0.350 Sum_probs=252.3
Q ss_pred cCCcceEEEEEeCCCcEEEEEecCCceEEEeccCCceeeeeecccc------------------ceEEEEEeCCCCEEEE
Q psy3053 578 SHKEAITAVAICGEGISVASVGRDAMLKIHSLKTGRQERSAVLSSM------------------TLSSLCILPDNCTMLV 639 (917)
Q Consensus 578 ~H~~~Vtsv~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~~~~~~~------------------~V~sl~~spd~~~Las 639 (917)
+|.+.|.+++|+|||++|++|+ ++.+++|++.+++.+..+..+.. .|.+++|+|++++|++
T Consensus 62 ~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s 140 (393)
T 1erj_A 62 DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLAT 140 (393)
T ss_dssp ECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEE
T ss_pred CCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEEE
Confidence 6999999999999999999976 78999999999988776655432 3899999999999999
Q ss_pred EecccEEEEEEeccCeeeEEeccCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEE
Q psy3053 640 GCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCL 719 (917)
Q Consensus 640 gs~Dg~I~Iwdl~tg~~i~~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l 719 (917)
|+.||.|++||+.+++.+..+.+|...|.+++|+|+++.|++|+.|++|++||+.++ .......+...+.++
T Consensus 141 ~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~--------~~~~~~~~~~~v~~~ 212 (393)
T 1erj_A 141 GAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTG--------QCSLTLSIEDGVTTV 212 (393)
T ss_dssp EETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT--------EEEEEEECSSCEEEE
T ss_pred EcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCC--------eeEEEEEcCCCcEEE
Confidence 999999999999999999999999999999999999999999999999999999876 233334567789999
Q ss_pred EEeC-CCCEEEEEECCCeEEEEECCCCeeeEEec------CCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeEEE
Q psy3053 720 AISK-DNNQLAVGTEAGELIIWSLENHLMTQQLS------DDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVC 792 (917)
Q Consensus 720 ~~sp-dg~~Lasgs~dG~I~iwDl~~~~~~~~l~------~~h~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~tg~~i~ 792 (917)
+++| +++++++|+.||.|++||++++..+..+. .+|...|.+++|+|+|+.|++++.|+.|++||+++.....
T Consensus 213 ~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~ 292 (393)
T 1erj_A 213 AVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKS 292 (393)
T ss_dssp EECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC-------
T ss_pred EEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcc
Confidence 9999 89999999999999999999998877663 3688999999999999999999999999999997654321
Q ss_pred EeecCCceEEEEEeCCCEEEEEeCCCeEEEEECCCCEEEEEEecCCCceEEE--eecCCEEEEEeCCCeEEEEECcCCeE
Q psy3053 793 NKVFEEKLLCLSWAGEEKVILGGALGMVYLVDLIQVQLLKQVRAHKDAVLSL--HFDNCTMLVGCWDSCVVIYDVECGRI 870 (917)
Q Consensus 793 ~~~~~~~i~~l~~s~~~~lv~gs~dG~I~vwdl~~~~~i~~l~~h~~~V~si--s~dg~~Lasgs~DG~I~Iwdl~tg~~ 870 (917)
... ....+.+...+.+|...|.++ ++++.+|++|+.||.|++||+.++++
T Consensus 293 ~~~----------------------------~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~ 344 (393)
T 1erj_A 293 DSK----------------------------TPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNP 344 (393)
T ss_dssp ------------------------------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCE
T ss_pred ccc----------------------------CCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeE
Confidence 100 011234455677899999888 56899999999999999999999999
Q ss_pred EEEecCCCCCEEEEEEcC------CCCEEEEEeCCCcEEEEecCcc
Q psy3053 871 VTELAGHEDAISCVAWDE------KRKRLISGNLVGAPKLYATEFY 910 (917)
Q Consensus 871 l~~l~~h~~~V~slafSp------dg~~LaSgs~DG~V~IWdl~~~ 910 (917)
+..+.+|.+.|.+++|++ ++.+|+||+.||+|++|+++..
T Consensus 345 ~~~l~~h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~~ 390 (393)
T 1erj_A 345 LLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKKI 390 (393)
T ss_dssp EEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEEEC
T ss_pred EEEECCCCCCEEEEEecCCcCcCCCCCEEEEECCCCcEEECccccc
Confidence 999999999999999986 6889999999999999998643
No 19
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=3e-37 Score=344.41 Aligned_cols=292 Identities=15% Similarity=0.245 Sum_probs=250.1
Q ss_pred cceeeeccCCcceEEEEE-----eC-CCcEEEEEecCCceEEEeccCC-------ceeeeeeccccceEEEEEeCCCCEE
Q psy3053 571 EPLHFCHSHKEAITAVAI-----CG-EGISVASVGRDAMLKIHSLKTG-------RQERSAVLSSMTLSSLCILPDNCTM 637 (917)
Q Consensus 571 ~~~~~l~~H~~~Vtsv~f-----Sp-dg~~Lasgs~Dg~I~IWd~~t~-------~~~~~~~~~~~~V~sl~~spd~~~L 637 (917)
.+...+.+|.+.|++++| ++ ++++|+||+.|++|++||+.++ .....+.+|...|.+++|+|++.++
T Consensus 12 ~~~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l 91 (343)
T 2xzm_R 12 VKRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFA 91 (343)
T ss_dssp EEEEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEE
T ss_pred eeeeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEE
Confidence 456788999999999999 76 8999999999999999999753 3456678899999999999999999
Q ss_pred EEEecccEEEEEEeccCeeeEEeccCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceE
Q psy3053 638 LVGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIK 717 (917)
Q Consensus 638 asgs~Dg~I~Iwdl~tg~~i~~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~ 717 (917)
++|+.|++|++||+.+++.+..+.+|.+.|.+++|+|++++|++|+.|++|++||+.... .........|...|.
T Consensus 92 ~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~-----~~~~~~~~~~~~~v~ 166 (343)
T 2xzm_R 92 ISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGEC-----KFSSAEKENHSDWVS 166 (343)
T ss_dssp EEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSCE-----EEECCTTTSCSSCEE
T ss_pred EEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCc-----eeeeecccCCCceee
Confidence 999999999999999999999999999999999999999999999999999999986431 001111236788999
Q ss_pred EEEEeCCC----------CEEEEEECCCeEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECC-
Q psy3053 718 CLAISKDN----------NQLAVGTEAGELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLT- 786 (917)
Q Consensus 718 ~l~~spdg----------~~Lasgs~dG~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~- 786 (917)
+++|+|++ .++++|+.||.|++||. +......+. .|...|.+++|+|+|++|++++.||.|++||+.
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~-~~~~~~~~~-~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~ 244 (343)
T 2xzm_R 167 CVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNT-NFQIRYTFK-AHESNVNHLSISPNGKYIATGGKDKKLLIWDILN 244 (343)
T ss_dssp EEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEET-TTEEEEEEE-CCSSCEEEEEECTTSSEEEEEETTCEEEEEESSC
T ss_pred eeeeccccccccccCCCCCEEEEEcCCCEEEEEcC-CCceeEEEc-CccccceEEEECCCCCEEEEEcCCCeEEEEECCC
Confidence 99999987 78999999999999994 456666666 789999999999999999999999999999994
Q ss_pred CCeEEEEeecCCceEEEEEeCCCEEEEEeCCCeEEEEECCCCEEEE--EEe-----------cCCCceEEE--eecCCEE
Q psy3053 787 TGMQVCNKVFEEKLLCLSWAGEEKVILGGALGMVYLVDLIQVQLLK--QVR-----------AHKDAVLSL--HFDNCTM 851 (917)
Q Consensus 787 tg~~i~~~~~~~~i~~l~~s~~~~lv~gs~dG~I~vwdl~~~~~i~--~l~-----------~h~~~V~si--s~dg~~L 851 (917)
.+...........+.+++|+|++.+++++.++.|++||+.+++... .+. +|...|.++ +|+|++|
T Consensus 245 ~~~~~~~~~~~~~v~~v~~sp~~~~la~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l 324 (343)
T 2xzm_R 245 LTYPQREFDAGSTINQIAFNPKLQWVAVGTDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKL 324 (343)
T ss_dssp CSSCSEEEECSSCEEEEEECSSSCEEEEEESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECSSSCCE
T ss_pred CcccceeecCCCcEEEEEECCCCCEEEEECCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEECCCCCeE
Confidence 4444445556778999999999998889999999999998765432 333 677888888 5689999
Q ss_pred EEEeCCCeEEEEECcCCe
Q psy3053 852 LVGCWDSCVVIYDVECGR 869 (917)
Q Consensus 852 asgs~DG~I~Iwdl~tg~ 869 (917)
++|+.||.|++|+++++.
T Consensus 325 ~sg~~Dg~v~~w~~~~g~ 342 (343)
T 2xzm_R 325 FAGFTDGVIRTFSFETSA 342 (343)
T ss_dssp EEEETTSEEEEEEEEEEE
T ss_pred EEecCCceEEEEEEEccC
Confidence 999999999999987653
No 20
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=3.8e-37 Score=344.81 Aligned_cols=285 Identities=13% Similarity=0.137 Sum_probs=229.9
Q ss_pred ccCCcceEEEEEeCCCcEEEEEecCCceEEEeccCC-----------ceeeeeeccccceEEEEEeCCCCEEEEEecccE
Q psy3053 577 HSHKEAITAVAICGEGISVASVGRDAMLKIHSLKTG-----------RQERSAVLSSMTLSSLCILPDNCTMLVGCWDSC 645 (917)
Q Consensus 577 ~~H~~~Vtsv~fSpdg~~Lasgs~Dg~I~IWd~~t~-----------~~~~~~~~~~~~V~sl~~spd~~~Lasgs~Dg~ 645 (917)
..|...|.+++|+|||++|++++ |+++++||.... ........+..+|.+++|+|++ .+++|+.||+
T Consensus 27 ~~~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~-~l~~~s~dg~ 104 (344)
T 4gqb_B 27 ACMERQLEAARYRSDGALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGER-GILVASDSGA 104 (344)
T ss_dssp SSCCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETTT-EEEEEETTSE
T ss_pred ccccCCEEEEEECCCCCEEEEEe-CCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCCC-eEEEEECCCE
Confidence 45778899999999999998877 788888874211 1111222355679999999985 6889999999
Q ss_pred EEEEEeccCeeeEE----eccCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEE
Q psy3053 646 VVIYDVECGRIVTE----LAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAI 721 (917)
Q Consensus 646 I~Iwdl~tg~~i~~----l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 721 (917)
|++||+.+++.... ..+|.+.|++++|+|++++|++|+.||+|++||+.++ .......+|...|.+++|
T Consensus 105 v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~-------~~~~~~~~h~~~V~~~~~ 177 (344)
T 4gqb_B 105 VELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQ-------VVLSSYRAHAAQVTCVAA 177 (344)
T ss_dssp EEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT-------EEEEEECCCSSCEEEEEE
T ss_pred EEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCC-------cEEEEEcCcCCceEEEEe
Confidence 99999999876543 4589999999999999999999999999999999876 345566789999999999
Q ss_pred eCCC-CEEEEEECCCeEEEEECCCCeeeEEecC-CCCCCeEEEEEecC-CCEEEEEeCCCeEEEEECCCCeEEEEeecCC
Q psy3053 722 SKDN-NQLAVGTEAGELIIWSLENHLMTQQLSD-DINASVNGVLFSED-GCRVLSCGNNCMLNVYDLTTGMQVCNKVFEE 798 (917)
Q Consensus 722 spdg-~~Lasgs~dG~I~iwDl~~~~~~~~l~~-~h~~~V~~v~fspd-g~~L~s~s~Dg~I~iwDl~tg~~i~~~~~~~ 798 (917)
++++ .++++|+.||+|++||+++++....+.. .+...+.+++|+|+ ++++++|+.||.|++||++++
T Consensus 178 ~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~---------- 247 (344)
T 4gqb_B 178 SPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKST---------- 247 (344)
T ss_dssp CSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC-----------
T ss_pred cCCCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCC----------
Confidence 9988 5789999999999999999988887752 34567888999884 456777777777777776654
Q ss_pred ceEEEEEeCCCEEEEEeCCCeEEEEECCCCEEEEEEecCCCceEEE--eecC-CEEEEEeCCCeEEEEECcCCeEEEEec
Q psy3053 799 KLLCLSWAGEEKVILGGALGMVYLVDLIQVQLLKQVRAHKDAVLSL--HFDN-CTMLVGCWDSCVVIYDVECGRIVTELA 875 (917)
Q Consensus 799 ~i~~l~~s~~~~lv~gs~dG~I~vwdl~~~~~i~~l~~h~~~V~si--s~dg-~~Lasgs~DG~I~Iwdl~tg~~l~~l~ 875 (917)
+++..+.+|...|+++ +|++ ++|++|+.||+|++||+.+++++ .+.
T Consensus 248 ------------------------------~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~-~~~ 296 (344)
T 4gqb_B 248 ------------------------------SCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELF-RSQ 296 (344)
T ss_dssp -------------------------------CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEE-EEC
T ss_pred ------------------------------cEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEE-EEc
Confidence 3445567788888888 4566 57999999999999999988765 568
Q ss_pred CCCCCEEEEEEcCCCC-EEEEEeCCCcEEEEecCcce
Q psy3053 876 GHEDAISCVAWDEKRK-RLISGNLVGAPKLYATEFYL 911 (917)
Q Consensus 876 ~h~~~V~slafSpdg~-~LaSgs~DG~V~IWdl~~~l 911 (917)
+|.+.|++++|+|+++ +|+|||.||+|++|++....
T Consensus 297 ~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~~~ 333 (344)
T 4gqb_B 297 AHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVPTEP 333 (344)
T ss_dssp CCSSCEEEEEECSSSTTEEEEEETTSCEEEEECCC--
T ss_pred CCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECCCCC
Confidence 9999999999999986 57799999999999998653
No 21
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8e-39 Score=363.88 Aligned_cols=331 Identities=13% Similarity=0.142 Sum_probs=279.0
Q ss_pred CcceEEEEEeCCCc-EEEEE----------ecCCceEEEeccCCcee--eeeeccccceEEEEEeCCCCEEEEEecccEE
Q psy3053 580 KEAITAVAICGEGI-SVASV----------GRDAMLKIHSLKTGRQE--RSAVLSSMTLSSLCILPDNCTMLVGCWDSCV 646 (917)
Q Consensus 580 ~~~Vtsv~fSpdg~-~Lasg----------s~Dg~I~IWd~~t~~~~--~~~~~~~~~V~sl~~spd~~~Lasgs~Dg~I 646 (917)
...|.+++|+|+|+ ++++| +.||.|++|++.++... .....|...|.+++|+|++++|++|+.||.|
T Consensus 12 ~~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v 91 (416)
T 2pm9_A 12 FSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASLQVDSKFNDLDWSHNNKIIAGALDNGSL 91 (416)
T ss_dssp EEESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCCCCSSCEEEEEECSSSSCEEEEESSSCE
T ss_pred hhhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEEecCCceEEEEECCCCCeEEEEccCCeE
Confidence 45789999999997 89999 88999999999887632 2223578899999999999999999999999
Q ss_pred EEEEecc----CeeeEEeccCCCceeEEEecCC-CCEEEEEECCCeEEEEeCCCCCCCcc--CCcceeeeccCCCceEEE
Q psy3053 647 VIYDVEC----GRIVTELAGHEDAISCVAWDEK-RKRLISGSWDCTVRVWNTGASWSHMK--PSKSLVSQLDLDNRIKCL 719 (917)
Q Consensus 647 ~Iwdl~t----g~~i~~l~~H~~~Vt~l~~spd-~~~L~Sgs~DgtI~vWdl~~~~~~~~--~~~~~~~~~~h~~~V~~l 719 (917)
++|++.+ .+....+.+|.+.|++++|+|+ +++|++++.||+|++||+.+...... ..........|...|.++
T Consensus 92 ~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 171 (416)
T 2pm9_A 92 ELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISL 171 (416)
T ss_dssp EEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEE
T ss_pred EEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeEE
Confidence 9999987 4578889999999999999998 89999999999999999987631110 011112235688899999
Q ss_pred EEeCC-CCEEEEEECCCeEEEEECCCCeeeEEecCCC-----CCCeEEEEEecCC-CEEEEEeCCC---eEEEEECCCC-
Q psy3053 720 AISKD-NNQLAVGTEAGELIIWSLENHLMTQQLSDDI-----NASVNGVLFSEDG-CRVLSCGNNC---MLNVYDLTTG- 788 (917)
Q Consensus 720 ~~spd-g~~Lasgs~dG~I~iwDl~~~~~~~~l~~~h-----~~~V~~v~fspdg-~~L~s~s~Dg---~I~iwDl~tg- 788 (917)
+|+|+ +..+++|+.||.|++||+++++.+..+.... ...|.+++|+|++ ..+++++.|+ .|++||++++
T Consensus 172 ~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~ 251 (416)
T 2pm9_A 172 AWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNAN 251 (416)
T ss_dssp EECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTT
T ss_pred EeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCC
Confidence 99999 7899999999999999999999988887322 7899999999997 6899999998 9999999986
Q ss_pred eEEEEee--cCCceEEEEEeC-C-CEEEEEeCCCeEEEEECCCCEEEEEEecCCCceEEE--eecC-CEEEEEeCCCeEE
Q psy3053 789 MQVCNKV--FEEKLLCLSWAG-E-EKVILGGALGMVYLVDLIQVQLLKQVRAHKDAVLSL--HFDN-CTMLVGCWDSCVV 861 (917)
Q Consensus 789 ~~i~~~~--~~~~i~~l~~s~-~-~~lv~gs~dG~I~vwdl~~~~~i~~l~~h~~~V~si--s~dg-~~Lasgs~DG~I~ 861 (917)
....... +...+.+++|++ + ..+++++.||.|++||+.+++.+..+.+|...|.++ ++++ .++++++.||.|+
T Consensus 252 ~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~ 331 (416)
T 2pm9_A 252 TPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFACASFDNKIE 331 (416)
T ss_dssp SCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSSSCCCCEEECTTCTTEEEECCSSSEEE
T ss_pred CCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCCCceEEEEECCCCCCEEEEEecCCcEE
Confidence 4444443 778899999987 4 468899999999999999999999999999999888 5577 8999999999999
Q ss_pred EEECcCCeEEEEe-----------------------------------cCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEe
Q psy3053 862 IYDVECGRIVTEL-----------------------------------AGHEDAISCVAWDEKRKRLISGNLVGAPKLYA 906 (917)
Q Consensus 862 Iwdl~tg~~l~~l-----------------------------------~~h~~~V~slafSpdg~~LaSgs~DG~V~IWd 906 (917)
+|++.++...... ..|..++.+++|+|+|++|++|+.||.|+||+
T Consensus 332 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~la~~~~d~~v~~w~ 411 (416)
T 2pm9_A 332 VQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHLQAPTWYGEPSPAAHWAFGGKLVQITPDGKGVSITN 411 (416)
T ss_dssp EEESCCCCCSSCC----------------------CCSCCCSSCCCCCSTTCCCSCCCEEETTTEEECBCTTSSCBCCBC
T ss_pred EEEccCCCCCcccccccccccCCcccccccccccccccccccccccCCccccCCccceEEeeCCeEEEEeCCCCeEEEEE
Confidence 9999876532211 11667888999999999999999999999999
Q ss_pred cCcc
Q psy3053 907 TEFY 910 (917)
Q Consensus 907 l~~~ 910 (917)
++..
T Consensus 412 ~~~~ 415 (416)
T 2pm9_A 412 PKIS 415 (416)
T ss_dssp CCCC
T ss_pred eccC
Confidence 9753
No 22
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=4.6e-37 Score=350.52 Aligned_cols=321 Identities=12% Similarity=0.111 Sum_probs=275.6
Q ss_pred cceEEEEEeCCCcEEEEEecCCceEEEeccCCceeeeeeccccceEEEEEeCCCCEEEEEecccEEEEEEeccCeeeEEe
Q psy3053 581 EAITAVAICGEGISVASVGRDAMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTMLVGCWDSCVVIYDVECGRIVTEL 660 (917)
Q Consensus 581 ~~Vtsv~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~~~~~~~~V~sl~~spd~~~Lasgs~Dg~I~Iwdl~tg~~i~~l 660 (917)
..+++++|+|+|++|++++.||.|++||+.+++....+..+ ..+...++++++++|++|+.||.|++||+.+++....+
T Consensus 57 ~~~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 135 (420)
T 3vl1_A 57 DAGKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGSKMLKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREID 135 (420)
T ss_dssp BCCTTCEEEEEETTEEEEEETTEEEEEECCSEETTTTSCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEEEET
T ss_pred ccccceeeeecCCeEEEEEcCCcEEEEEecccceeeEEecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCcceeeec
Confidence 34568999999999999999999999999988777666655 34455578999999999999999999999999999988
Q ss_pred ccCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEEEECCCeEEEE
Q psy3053 661 AGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGELIIW 740 (917)
Q Consensus 661 ~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~dG~I~iw 740 (917)
.+|.+.|++++|+|++++|++|+.||+|++||+.++ .......+|...|.+++|+|+++.+++|+.||.|++|
T Consensus 136 ~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~-------~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iw 208 (420)
T 3vl1_A 136 QAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDG-------SNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLW 208 (420)
T ss_dssp TSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTC-------CCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEE
T ss_pred ccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCC-------cCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEe
Confidence 999999999999999999999999999999999876 2344456899999999999999999999999999999
Q ss_pred ECCCCeeeEEecC--CCCCCeEE---------------------EEEecCCCEEEEEeCCCeEEEEECCCCeEEEEee--
Q psy3053 741 SLENHLMTQQLSD--DINASVNG---------------------VLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCNKV-- 795 (917)
Q Consensus 741 Dl~~~~~~~~l~~--~h~~~V~~---------------------v~fspdg~~L~s~s~Dg~I~iwDl~tg~~i~~~~-- 795 (917)
|+++++.+..+.. .+...+.+ ++|+|+|+++++++.||.|++||+++++......
T Consensus 209 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~ 288 (420)
T 3vl1_A 209 ECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSK 288 (420)
T ss_dssp ETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECCT
T ss_pred ECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcccc
Confidence 9999998888763 23344444 4557889999999999999999999998776654
Q ss_pred cCCceEEEEEeCCC--EEEEEeCCCeEEEEECCCCE-EEEEEec-CCCceEEE-eecCCEEEEEeCCCeEEEEECcCC--
Q psy3053 796 FEEKLLCLSWAGEE--KVILGGALGMVYLVDLIQVQ-LLKQVRA-HKDAVLSL-HFDNCTMLVGCWDSCVVIYDVECG-- 868 (917)
Q Consensus 796 ~~~~i~~l~~s~~~--~lv~gs~dG~I~vwdl~~~~-~i~~l~~-h~~~V~si-s~dg~~Lasgs~DG~I~Iwdl~tg-- 868 (917)
+...+.+++|++++ .+++|+.||.|++||+.+++ ++..+.+ |...+.++ .+++++|++|+.||.|++|++...
T Consensus 289 ~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~d~~v~iw~~~~~~~ 368 (420)
T 3vl1_A 289 FTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNVYFAAGALFVSSGFDTSIKLDIISDPES 368 (420)
T ss_dssp TSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEEEEETTEEEEEETTTEEEEEEEECCTTC
T ss_pred cCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEEEeCCCCEEEEecCCccEEEEeccCCCC
Confidence 45789999999876 68999999999999999874 4666766 67788888 668889999999999999998763
Q ss_pred -------eEEEEecCCCCCEEEEEEcCCCC---EEEEEeCCCcEEEEecCc
Q psy3053 869 -------RIVTELAGHEDAISCVAWDEKRK---RLISGNLVGAPKLYATEF 909 (917)
Q Consensus 869 -------~~l~~l~~h~~~V~slafSpdg~---~LaSgs~DG~V~IWdl~~ 909 (917)
.....+.+|.+.|.+++|+|++. .+++++.+|.+.+|+++.
T Consensus 369 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g~~g~~~~~~~~~ 419 (420)
T 3vl1_A 369 ERPAIEFETPTFLVSNDDAVSQFCYVSDDESNGEVLEVGKNNFCALYNLSN 419 (420)
T ss_dssp CSCEECTTSCEEECCSSCCCCEEEEECCSSSSCEEEEEETTTEEEEEESCC
T ss_pred CccceeccCccEEccCCcceEEEEEccCCCCcceEEEEcCCceEEEEeccC
Confidence 12234567889999999999999 888889999999999874
No 23
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=2.2e-36 Score=333.70 Aligned_cols=293 Identities=20% Similarity=0.296 Sum_probs=263.1
Q ss_pred ccceeeeccCCcceEEEEEeCC-CcEEEEEecCCceEEEeccCCc-----eeeeeeccccceEEEEEeCCCCEEEEEecc
Q psy3053 570 LEPLHFCHSHKEAITAVAICGE-GISVASVGRDAMLKIHSLKTGR-----QERSAVLSSMTLSSLCILPDNCTMLVGCWD 643 (917)
Q Consensus 570 l~~~~~l~~H~~~Vtsv~fSpd-g~~Lasgs~Dg~I~IWd~~t~~-----~~~~~~~~~~~V~sl~~spd~~~Lasgs~D 643 (917)
++...+|+||.+.|++|+|+|+ +++|+|||.||+|++||+.+++ ..+.+.+|...|.+++|+|++++|++|+.|
T Consensus 28 ~~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d 107 (340)
T 4aow_A 28 MTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWD 107 (340)
T ss_dssp EEEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred eEEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEccc
Confidence 4556789999999999999998 6899999999999999987654 356678899999999999999999999999
Q ss_pred cEEEEEEeccCeeeEEeccCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeC
Q psy3053 644 SCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISK 723 (917)
Q Consensus 644 g~I~Iwdl~tg~~i~~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp 723 (917)
+.|++|+...+........+...+..+.+++++..|++|+.|+.+++||..... .......+|...+.++++++
T Consensus 108 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~------~~~~~~~~~~~~v~~~~~~~ 181 (340)
T 4aow_A 108 GTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVC------KYTVQDESHSEWVSCVRFSP 181 (340)
T ss_dssp SEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCE------EEEECSSSCSSCEEEEEECS
T ss_pred ccceEEeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCc------eEEEEeccccCcccceEEcc
Confidence 999999999999998888999999999999999999999999999999986541 22333457888999999988
Q ss_pred CC--CEEEEEECCCeEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCceE
Q psy3053 724 DN--NQLAVGTEAGELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCNKVFEEKLL 801 (917)
Q Consensus 724 dg--~~Lasgs~dG~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~tg~~i~~~~~~~~i~ 801 (917)
++ ..+++++.|+.|++||+++++....+. +|.+.|.+++|+|++++|++++.||.|++||+.+++.+........+.
T Consensus 182 ~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~-~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~v~ 260 (340)
T 4aow_A 182 NSSNPIIVSCGWDKLVKVWNLANCKLKTNHI-GHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIIN 260 (340)
T ss_dssp CSSSCEEEEEETTSCEEEEETTTTEEEEEEC-CCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECSSCEE
T ss_pred CCCCcEEEEEcCCCEEEEEECCCCceeeEec-CCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeecCCceEE
Confidence 65 578899999999999999999998887 899999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCEEEEEeCCCeEEEEECCCCEEEEEEe---------cCCCceEEE--eecCCEEEEEeCCCeEEEEECcCCe
Q psy3053 802 CLSWAGEEKVILGGALGMVYLVDLIQVQLLKQVR---------AHKDAVLSL--HFDNCTMLVGCWDSCVVIYDVECGR 869 (917)
Q Consensus 802 ~l~~s~~~~lv~gs~dG~I~vwdl~~~~~i~~l~---------~h~~~V~si--s~dg~~Lasgs~DG~I~Iwdl~tg~ 869 (917)
++++++++.+++++.|+.|++||+.++..+..+. +|...|+++ ++++++|++|+.||.|++||+++|+
T Consensus 261 ~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~tGt 339 (340)
T 4aow_A 261 ALCFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIGT 339 (340)
T ss_dssp EEEECSSSSEEEEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETTSCEEEEEEEC--
T ss_pred eeecCCCCceeeccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCcC
Confidence 9999999999999999999999999988776653 578899988 5689999999999999999999886
No 24
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=4.9e-36 Score=347.52 Aligned_cols=337 Identities=15% Similarity=0.221 Sum_probs=285.9
Q ss_pred cccCCccccceeeeccCCcce-EEEEEeCCCcEEEEEecCCceEEEeccCCceeeeeeccccceEEEEEeCCCCEEEEEe
Q psy3053 563 SWCDKSILEPLHFCHSHKEAI-TAVAICGEGISVASVGRDAMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTMLVGC 641 (917)
Q Consensus 563 ~w~~~~~l~~~~~l~~H~~~V-tsv~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~~~~~~~~V~sl~~spd~~~Lasgs 641 (917)
.|...........+.+|.+.| +++.+ +++++++|+.||+|++||+.+++.+..+.+|...|.+++|++++ .+++|+
T Consensus 104 ~w~~~~~~~~~~~l~~h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~-~l~s~s 180 (464)
T 3v7d_B 104 NWYNPKFVPQRTTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG-ILVSGS 180 (464)
T ss_dssp HHHCTTCCCEEEEEECCSSSCEEEEEE--ETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSTT-EEEEEE
T ss_pred hhcCCCcCcceEEEcCCCCCcEEEEEE--CCCEEEEEcCCCcEEEEECCCCcEEEEEeCCCcCEEEEEEcCCC-EEEEEe
Confidence 455444445567889999886 55555 57799999999999999999999999999999999999999988 999999
Q ss_pred cccEEEEEEeccCeeeEEeccCCCceeEEEec--CCCCEEEEEECCCeEEEEeCCCCCCCccCC----------------
Q psy3053 642 WDSCVVIYDVECGRIVTELAGHEDAISCVAWD--EKRKRLISGSWDCTVRVWNTGASWSHMKPS---------------- 703 (917)
Q Consensus 642 ~Dg~I~Iwdl~tg~~i~~l~~H~~~Vt~l~~s--pd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~---------------- 703 (917)
.||+|++||+++++.+..+.+|.+.|.+++|+ ++++++++|+.||+|++||+.+........
T Consensus 181 ~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (464)
T 3v7d_B 181 TDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENP 260 (464)
T ss_dssp TTSCEEEEETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCT
T ss_pred CCCCEEEEECCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCe
Confidence 99999999999999999999999999999998 577899999999999999998763211100
Q ss_pred cceeeeccCCCceEEEEEeCCCCEEEEEECCCeEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEEeCCCeEEEE
Q psy3053 704 KSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCGNNCMLNVY 783 (917)
Q Consensus 704 ~~~~~~~~h~~~V~~l~~spdg~~Lasgs~dG~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~Dg~I~iw 783 (917)
.......+|...+.++ +++++.+++|+.||.|++||+.+++.+..+. +|...|.+++|+|+++.+++++.||.|++|
T Consensus 261 ~~~~~~~~~~~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~sg~~dg~i~vw 337 (464)
T 3v7d_B 261 YFVGVLRGHMASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKCLYILS-GHTDRIYSTIYDHERKRCISASMDTTIRIW 337 (464)
T ss_dssp TEEEEECCCSSCEEEE--EEETTEEEEEETTSCEEEEETTTTEEEEEEC-CCSSCEEEEEEETTTTEEEEEETTSCEEEE
T ss_pred EEEEEccCccceEEEE--cCCCCEEEEEeCCCeEEEEECCCCcEEEEec-CCCCCEEEEEEcCCCCEEEEEeCCCcEEEE
Confidence 0133456777888776 5778999999999999999999999999887 889999999999999999999999999999
Q ss_pred ECCCCeEEEEee-cCCceEEEEEeCCCEEEEEeCCCeEEEEECCCCEEEEEEe-cCCCceEEEeecCCEEEEEeCCCeEE
Q psy3053 784 DLTTGMQVCNKV-FEEKLLCLSWAGEEKVILGGALGMVYLVDLIQVQLLKQVR-AHKDAVLSLHFDNCTMLVGCWDSCVV 861 (917)
Q Consensus 784 Dl~tg~~i~~~~-~~~~i~~l~~s~~~~lv~gs~dG~I~vwdl~~~~~i~~l~-~h~~~V~sis~dg~~Lasgs~DG~I~ 861 (917)
|+.+++.+.... +...+.++++++. .+++|+.||.|++||+.++....... .+...+.+++++++++++|+ ||.|+
T Consensus 338 d~~~~~~~~~~~~h~~~v~~~~~~~~-~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-dg~i~ 415 (464)
T 3v7d_B 338 DLENGELMYTLQGHTALVGLLRLSDK-FLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGS-ENQFN 415 (464)
T ss_dssp ETTTTEEEEEECCCSSCEEEEEECSS-EEEEEETTSEEEEEETTTCCEEEEEECTTCCCEEEEEECSSEEEEEE-TTEEE
T ss_pred ECCCCcEEEEEeCCCCcEEEEEEcCC-EEEEEeCCCcEEEEECCCCceeeeecCCCCccEEEEEeCCCEEEEec-CCeEE
Confidence 999999887764 6778999999965 99999999999999999987666553 34455667799999999998 89999
Q ss_pred EEECcCCeEEEE-ecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecC
Q psy3053 862 IYDVECGRIVTE-LAGHEDAISCVAWDEKRKRLISGNLVGAPKLYATE 908 (917)
Q Consensus 862 Iwdl~tg~~l~~-l~~h~~~V~slafSpdg~~LaSgs~DG~V~IWdl~ 908 (917)
+||+.+++.+.. +.+|.+.|.+++|+ ++..+++++.||.+.+|-++
T Consensus 416 iwd~~~g~~~~~~~~~~~~~v~~v~~~-~~~l~~~~~~~g~~~i~~ld 462 (464)
T 3v7d_B 416 IYNLRSGKLVHANILKDADQIWSVNFK-GKTLVAAVEKDGQSFLEILD 462 (464)
T ss_dssp EEETTTCCEEESCTTTTCSEEEEEEEE-TTEEEEEEEETTEEEEEEEE
T ss_pred EEECCCCcEEehhhccCCCcEEEEEec-CCEEEEEEEeCCeEEEEEee
Confidence 999999999986 67789999999998 44556666778877766554
No 25
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=2.2e-37 Score=348.29 Aligned_cols=314 Identities=15% Similarity=0.212 Sum_probs=239.4
Q ss_pred EEEEeCCCcEEEEEecCCceEEEeccCCceeeeeeccccceEEEEEeCCCCEEEEEec------ccEEEEEEeccCeee-
Q psy3053 585 AVAICGEGISVASVGRDAMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTMLVGCW------DSCVVIYDVECGRIV- 657 (917)
Q Consensus 585 sv~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~~~~~~~~V~sl~~spd~~~Lasgs~------Dg~I~Iwdl~tg~~i- 657 (917)
.+.+.+++.+ +.++.+.....|++.... ...|...|.+++|+|||++||+|+. |+.|++|+..++...
T Consensus 10 g~d~g~~~~~-~~~~g~~~~~~w~~p~~~----p~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~ 84 (357)
T 4g56_B 10 GVDLGTENLY-FQSNGSSKGSAWGRPVTA----PACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNE 84 (357)
T ss_dssp -----------------------------------CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CG
T ss_pred CCCCCccceE-EecCCCccccccCCCCCC----cccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcce
Confidence 3445555544 444556777899876432 3468889999999999999999996 889999998876543
Q ss_pred ---EEeccCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEEEECC
Q psy3053 658 ---TELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEA 734 (917)
Q Consensus 658 ---~~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~d 734 (917)
....+|.+.|++++|+|++. +++++.||+|++||+.++.... .......+|...|.+++|+|++++|++|+.|
T Consensus 85 ~~~~~~~~~~~~V~~~~~s~d~~-~l~~s~dg~v~lWd~~~~~~~~---~~~~~~~~h~~~V~~v~~spdg~~l~sgs~d 160 (357)
T 4g56_B 85 SLCTAGVQTEAGVTDVAWVSEKG-ILVASDSGAVELWEILEKESLL---VNKFAKYEHDDIVKTLSVFSDGTQAVSGGKD 160 (357)
T ss_dssp GGCSEEEECSSCEEEEEEETTTE-EEEEETTSCEEEC--------C---CCCEEECCCSSCEEEEEECSSSSEEEEEETT
T ss_pred eEecccCCCCCCEEEEEEcCCCC-EEEEECCCEEEEeeccccceeE---EEeeccCCCCCCEEEEEECCCCCEEEEEeCC
Confidence 33456999999999999875 5678899999999998763211 1122345789999999999999999999999
Q ss_pred CeEEEEECCCCeeeEEecCCCCCCeEEEEEecCCC-EEEEEeCCCeEEEEECCCCeEEEEee---cCCceEEEEEeCC--
Q psy3053 735 GELIIWSLENHLMTQQLSDDINASVNGVLFSEDGC-RVLSCGNNCMLNVYDLTTGMQVCNKV---FEEKLLCLSWAGE-- 808 (917)
Q Consensus 735 G~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~-~L~s~s~Dg~I~iwDl~tg~~i~~~~---~~~~i~~l~~s~~-- 808 (917)
|.|++||+++++.+..+. .|...|.+++|++++. .+++++.||.|++||+++++...... +...+.+++|+|+
T Consensus 161 g~v~iwd~~~~~~~~~~~-~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~ 239 (357)
T 4g56_B 161 FSVKVWDLSQKAVLKSYN-AHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKD 239 (357)
T ss_dssp SCEEEEETTTTEEEEEEC-CCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTST
T ss_pred CeEEEEECCCCcEEEEEc-CCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhccc
Confidence 999999999999999988 8999999999999875 78999999999999999987765543 3456899999975
Q ss_pred CEEEEEeCCCeEEEEECCCCEEEEEEecCCCceEEEe--ecC-CEEEEEeCCCeEEEEECcCCeEEEEecCCCCCEEEEE
Q psy3053 809 EKVILGGALGMVYLVDLIQVQLLKQVRAHKDAVLSLH--FDN-CTMLVGCWDSCVVIYDVECGRIVTELAGHEDAISCVA 885 (917)
Q Consensus 809 ~~lv~gs~dG~I~vwdl~~~~~i~~l~~h~~~V~sis--~dg-~~Lasgs~DG~I~Iwdl~tg~~l~~l~~h~~~V~sla 885 (917)
..+++|+.|+.|++||+++++.+..+.+|...|+++. |++ ++|++|+.||+|+|||+++++++..+ +|.+.|++++
T Consensus 240 ~~la~g~~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~-~H~~~V~~va 318 (357)
T 4g56_B 240 DTFACGDETGNVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDL-SHRDFVTGVA 318 (357)
T ss_dssp TEEEEEESSSCEEEEESSCGGGCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEEC-CCSSCEEEEE
T ss_pred ceEEEeecccceeEEECCCCcEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEEC-CCCCCEEEEE
Confidence 3678899999999999999999999999999999994 565 67999999999999999999887765 7999999999
Q ss_pred EcC-CCCEEEEEeCCCcEEEEecCc
Q psy3053 886 WDE-KRKRLISGNLVGAPKLYATEF 909 (917)
Q Consensus 886 fSp-dg~~LaSgs~DG~V~IWdl~~ 909 (917)
|+| ++.+|+|||.||+|++|++..
T Consensus 319 fsP~d~~~l~s~s~Dg~v~iW~~~~ 343 (357)
T 4g56_B 319 WSPLDHSKFTTVGWDHKVLHHHLPS 343 (357)
T ss_dssp ECSSSTTEEEEEETTSCEEEEECC-
T ss_pred EeCCCCCEEEEEcCCCeEEEEECCC
Confidence 998 899999999999999999964
No 26
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=2.2e-37 Score=402.74 Aligned_cols=347 Identities=16% Similarity=0.239 Sum_probs=305.8
Q ss_pred ccccCCccccceeeeccCCcceEEEEEeCCCcEEEEEecCCceEEEeccCCceeeeeeccccceEEEEEeC--CCCEEEE
Q psy3053 562 NSWCDKSILEPLHFCHSHKEAITAVAICGEGISVASVGRDAMLKIHSLKTGRQERSAVLSSMTLSSLCILP--DNCTMLV 639 (917)
Q Consensus 562 ~~w~~~~~l~~~~~l~~H~~~Vtsv~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~~~~~~~~V~sl~~sp--d~~~Las 639 (917)
.+|+..+. +.+..+.+|.+.|++++|+|+|+++++++.||.|++||+.+++.+..+..|...|.+++|+| ++..+++
T Consensus 640 ~vw~~~~~-~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s 718 (1249)
T 3sfz_A 640 QVFKAETG-EKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLAT 718 (1249)
T ss_dssp EEEETTTC-CEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEE
T ss_pred EEEECCCC-CEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEecCCCceEEEE
Confidence 57886554 56778899999999999999999999999999999999999999999999999999999999 5568999
Q ss_pred EecccEEEEEEeccCeeeEEeccCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCcc------------------
Q psy3053 640 GCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMK------------------ 701 (917)
Q Consensus 640 gs~Dg~I~Iwdl~tg~~i~~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~------------------ 701 (917)
|+.||.|++||+.+++....+.+|.+.|++++|+|+++.+++|+.||+|++||+.++.....
T Consensus 719 g~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 798 (1249)
T 3sfz_A 719 GSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVE 798 (1249)
T ss_dssp EETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCC
T ss_pred EeCCCeEEEEECCCcchhheecCCCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCcccccc
Confidence 99999999999999999999999999999999999999999999999999999765410000
Q ss_pred ------------------------------------------------------------------------CCcceeee
Q psy3053 702 ------------------------------------------------------------------------PSKSLVSQ 709 (917)
Q Consensus 702 ------------------------------------------------------------------------~~~~~~~~ 709 (917)
........
T Consensus 799 ~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~ 878 (1249)
T 3sfz_A 799 VIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADC 878 (1249)
T ss_dssp CCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEE
T ss_pred ceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeec
Confidence 00011123
Q ss_pred ccCCCceEEEEEeCCCCEEEEEECCCeEEEEECC----------------------------------------------
Q psy3053 710 LDLDNRIKCLAISKDNNQLAVGTEAGELIIWSLE---------------------------------------------- 743 (917)
Q Consensus 710 ~~h~~~V~~l~~spdg~~Lasgs~dG~I~iwDl~---------------------------------------------- 743 (917)
.+|...|.+++|+|+++.+++++.||.|++||+.
T Consensus 879 ~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 958 (1249)
T 3sfz_A 879 RGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDY 958 (1249)
T ss_dssp CCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEE
T ss_pred CCCccceEEEEECCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEE
Confidence 4577788889999988888888888888888743
Q ss_pred ---------------------------------CCeeeEEecCCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeE
Q psy3053 744 ---------------------------------NHLMTQQLSDDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQ 790 (917)
Q Consensus 744 ---------------------------------~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~tg~~ 790 (917)
+++....+. +|...|.+++|+|+|+.+++++.||.|++||+.+++.
T Consensus 959 ~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~-~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~ 1037 (1249)
T 3sfz_A 959 LPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGV-GHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDY 1037 (1249)
T ss_dssp ECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECC-CCSSCCCCEEECSSSSCEEEECSSSBEEEEETTTTEE
T ss_pred cccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecc-cCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCce
Confidence 222223333 6788999999999999999999999999999999998
Q ss_pred EEEeecCCceEEEEEeCCCEEEEEeCCCeEEEEECCCCEEEEEEecCCCceEEE--eecCCEEEEEeCCCeEEEEECcCC
Q psy3053 791 VCNKVFEEKLLCLSWAGEEKVILGGALGMVYLVDLIQVQLLKQVRAHKDAVLSL--HFDNCTMLVGCWDSCVVIYDVECG 868 (917)
Q Consensus 791 i~~~~~~~~i~~l~~s~~~~lv~gs~dG~I~vwdl~~~~~i~~l~~h~~~V~si--s~dg~~Lasgs~DG~I~Iwdl~tg 868 (917)
.....+...+.++++++++.+++++.+|.|++||+.+++....+.+|.+.|.++ +++++.+++|+.||+|++||+.++
T Consensus 1038 ~~~~~~~~~v~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~s~d~~v~iwd~~~~ 1117 (1249)
T 3sfz_A 1038 VFLQAHQETVKDFRLLQDSRLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLL 1117 (1249)
T ss_dssp ECCBCCSSCEEEEEECSSSEEEEEESSSEEEEEETTTTCCCEEEECCSSCCCCEEECSSSSSCEEECCSSCCCEECSSSS
T ss_pred EEEecCCCcEEEEEEcCCCcEEEEECCCcEEEEECCCCceeEEEcccCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCc
Confidence 887788899999999999999999999999999999999999999999999887 679999999999999999999999
Q ss_pred eEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcc
Q psy3053 869 RIVTELAGHEDAISCVAWDEKRKRLISGNLVGAPKLYATEFY 910 (917)
Q Consensus 869 ~~l~~l~~h~~~V~slafSpdg~~LaSgs~DG~V~IWdl~~~ 910 (917)
+++..+.+|.+.|++++|+|+|++|++|+.||.|++||+...
T Consensus 1118 ~~~~~l~~h~~~v~~~~~s~dg~~lat~~~dg~i~vwd~~~~ 1159 (1249)
T 3sfz_A 1118 SPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDG 1159 (1249)
T ss_dssp SCSBCCCCCSSCEEEEEECSSSSEEEEEETTSCCCEEESSSS
T ss_pred ceeeeeccCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCCC
Confidence 999999999999999999999999999999999999999743
No 27
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.4e-36 Score=335.57 Aligned_cols=292 Identities=17% Similarity=0.211 Sum_probs=238.8
Q ss_pred ccceeeeccCCcceEEEEEeCCCcEEEEEecCCceEEEeccCCc--eeeee-ec-cccceEEEEEeCCCCEEEEEecccE
Q psy3053 570 LEPLHFCHSHKEAITAVAICGEGISVASVGRDAMLKIHSLKTGR--QERSA-VL-SSMTLSSLCILPDNCTMLVGCWDSC 645 (917)
Q Consensus 570 l~~~~~l~~H~~~Vtsv~fSpdg~~Lasgs~Dg~I~IWd~~t~~--~~~~~-~~-~~~~V~sl~~spd~~~Lasgs~Dg~ 645 (917)
++++..+.+|.++|.+++|+++ +|++|+.|++|++|++.++. ....+ .. |...|.+++|+|++++|++|+.|++
T Consensus 4 ~~~~~~~~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~ 81 (330)
T 2hes_X 4 INLIKSLKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDST 81 (330)
T ss_dssp CEEEEEEECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSC
T ss_pred cccceeeccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCc
Confidence 4567889999999999999998 99999999999999998753 34444 34 8889999999999999999999999
Q ss_pred EEEEEecc-------CeeeEEeccCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEE
Q psy3053 646 VVIYDVEC-------GRIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKC 718 (917)
Q Consensus 646 I~Iwdl~t-------g~~i~~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~ 718 (917)
|++|++.. .+....+.+|.+.|.+++|+|++++|++|+.|++|++||+..... .........+|...|.+
T Consensus 82 v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~---~~~~~~~~~~h~~~v~~ 158 (330)
T 2hes_X 82 VSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGE---EYECISVLQEHSQDVKH 158 (330)
T ss_dssp EEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCC---CCEEEEEECCCSSCEEE
T ss_pred EEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCC---CeEEEEEeccCCCceEE
Confidence 99999853 356778899999999999999999999999999999999854311 11233446689999999
Q ss_pred EEEeCCCCEEEEEECCCeEEEEECCCC--eeeEEecCCCCCCeEEEEEecC--CCEEEEEeCCCeEEEEECCCC------
Q psy3053 719 LAISKDNNQLAVGTEAGELIIWSLENH--LMTQQLSDDINASVNGVLFSED--GCRVLSCGNNCMLNVYDLTTG------ 788 (917)
Q Consensus 719 l~~spdg~~Lasgs~dG~I~iwDl~~~--~~~~~l~~~h~~~V~~v~fspd--g~~L~s~s~Dg~I~iwDl~tg------ 788 (917)
++|+|++.+|++|+.||+|++||..++ +.+..+. +|.+.|.+++|+|+ +..|++++.|++|++||+.++
T Consensus 159 v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~ 237 (330)
T 2hes_X 159 VIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLN-GHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQ 237 (330)
T ss_dssp EEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEEC-CCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCE
T ss_pred EEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEcc-CCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccc
Confidence 999999999999999999999998876 5666676 89999999999998 778999999999999998654
Q ss_pred --eEEEEee--cCCceEEEEEeCCCEEEEEeCCCeEEEEECCCCE--EEEE-EecCCC-ceEEEe--e--cCCEEEEEeC
Q psy3053 789 --MQVCNKV--FEEKLLCLSWAGEEKVILGGALGMVYLVDLIQVQ--LLKQ-VRAHKD-AVLSLH--F--DNCTMLVGCW 856 (917)
Q Consensus 789 --~~i~~~~--~~~~i~~l~~s~~~~lv~gs~dG~I~vwdl~~~~--~i~~-l~~h~~-~V~sis--~--dg~~Lasgs~ 856 (917)
....... +...+.+++|++++.+++++.||.|++||..++. .... ..+|.. .|.+++ + ++++|++|+.
T Consensus 238 ~~~~~~~~~~~h~~~v~~v~~s~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~las~s~ 317 (330)
T 2hes_X 238 EWVCEAILPDVHKRQVYNVAWGFNGLIASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTILATGGD 317 (330)
T ss_dssp EEEEEEECCSCCSSCEEEEEECTTSCEEEEETTSCEEEEEEETTEEEEEEEESCTTTTSCEEEEEEC-----CCEEEEET
T ss_pred eeEEeeecccccccceEEEEEcCCCEEEEEeCCCEEEEEEcCCCceEEEeccccccccceEEEEEEecCCCceEEEEecC
Confidence 2223322 6678999999998899999999999999998874 3333 357877 888884 4 5789999999
Q ss_pred CCeEEEEECcC
Q psy3053 857 DSCVVIYDVEC 867 (917)
Q Consensus 857 DG~I~Iwdl~t 867 (917)
||.|++|++++
T Consensus 318 Dg~v~~W~~~~ 328 (330)
T 2hes_X 318 DGIVNFWSLEK 328 (330)
T ss_dssp TSEEEEEEC--
T ss_pred CCcEEEEEecc
Confidence 99999999864
No 28
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=1.2e-35 Score=355.20 Aligned_cols=339 Identities=13% Similarity=0.161 Sum_probs=284.7
Q ss_pred ccccCCcc---ccceeeeccCCcc-eEEEEEeC--CCcEEEEEecCCceEEEeccCC--------ceeeeeeccccceEE
Q psy3053 562 NSWCDKSI---LEPLHFCHSHKEA-ITAVAICG--EGISVASVGRDAMLKIHSLKTG--------RQERSAVLSSMTLSS 627 (917)
Q Consensus 562 ~~w~~~~~---l~~~~~l~~H~~~-Vtsv~fSp--dg~~Lasgs~Dg~I~IWd~~t~--------~~~~~~~~~~~~V~s 627 (917)
.+|+..+. .++...+.+|.+. |++++|+| +|++|++|+.||.|++||+.++ +....+..|..+|.+
T Consensus 42 ~v~~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 121 (615)
T 1pgu_A 42 FVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISD 121 (615)
T ss_dssp EEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEE
T ss_pred EEEECCCCCCccccceEEecCCCceEEEEEECcCCCCCEEEEecCCCEEEEEeCCCCcccccccccccchhhcccccEEE
Confidence 57775533 1567889999999 99999999 9999999999999999999755 667778889999999
Q ss_pred EEEeCCCCEEEEEecc----cEEEEEEeccCeeeEEeccCCCceeEEEecCCCC-EEEEEECCCeEEEEeCCCCCCCccC
Q psy3053 628 LCILPDNCTMLVGCWD----SCVVIYDVECGRIVTELAGHEDAISCVAWDEKRK-RLISGSWDCTVRVWNTGASWSHMKP 702 (917)
Q Consensus 628 l~~spd~~~Lasgs~D----g~I~Iwdl~tg~~i~~l~~H~~~Vt~l~~spd~~-~L~Sgs~DgtI~vWdl~~~~~~~~~ 702 (917)
++|+|+++++++++.+ +.|++|| +++.+..+.+|.+.|++++|+|+++ .+++++.|+.|++||+.+.
T Consensus 122 ~~~s~~~~~l~~~~~~~~~~~~v~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~------ 193 (615)
T 1pgu_A 122 ISWDFEGRRLCVVGEGRDNFGVFISWD--SGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPF------ 193 (615)
T ss_dssp EEECTTSSEEEEEECCSSCSEEEEETT--TCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTB------
T ss_pred EEEeCCCCEEEEeccCCCCccEEEEEE--CCCcceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCc------
Confidence 9999999999999987 7888888 6788899999999999999999998 8999999999999998765
Q ss_pred CcceeeeccCCC---ceEEEEEeCC-CCEEEEEECCCeEEEEECCCCeeeEEecC---CCCCCeEEEEEecCCCEEEEEe
Q psy3053 703 SKSLVSQLDLDN---RIKCLAISKD-NNQLAVGTEAGELIIWSLENHLMTQQLSD---DINASVNGVLFSEDGCRVLSCG 775 (917)
Q Consensus 703 ~~~~~~~~~h~~---~V~~l~~spd-g~~Lasgs~dG~I~iwDl~~~~~~~~l~~---~h~~~V~~v~fspdg~~L~s~s 775 (917)
........|.. .|.+++|+|+ ++++++|+.||.|++||+.+++.+..+.. .|...|.+++|+ ++..+++++
T Consensus 194 -~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~ 271 (615)
T 1pgu_A 194 -KFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVG 271 (615)
T ss_dssp -EEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEE
T ss_pred -ceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEecccccccCCceEEEEEc-CCCEEEEEc
Confidence 23444556888 8999999999 99999999999999999999999988844 689999999999 999999999
Q ss_pred CCCeEEEEECCCCeEEEEeecC-----C----------------------------------------------------
Q psy3053 776 NNCMLNVYDLTTGMQVCNKVFE-----E---------------------------------------------------- 798 (917)
Q Consensus 776 ~Dg~I~iwDl~tg~~i~~~~~~-----~---------------------------------------------------- 798 (917)
.|+.|++||+.+++.+...... .
T Consensus 272 ~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~l~ 351 (615)
T 1pgu_A 272 ADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTVNPLI 351 (615)
T ss_dssp TTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEETTTTE
T ss_pred CCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeCCCCeEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEecCcE
Confidence 9999999999987765443322 1
Q ss_pred ----------------------ceEEEEEeCC------------------------------------------------
Q psy3053 799 ----------------------KLLCLSWAGE------------------------------------------------ 808 (917)
Q Consensus 799 ----------------------~i~~l~~s~~------------------------------------------------ 808 (917)
.+.++++.++
T Consensus 352 ~~~~dg~i~~w~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~ 431 (615)
T 1pgu_A 352 SGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLI 431 (615)
T ss_dssp EEETTSCEEETTTTEEECCCCSCEEEEECCSTTCCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEE
T ss_pred EECCCCeEEEEEchhhcCcccCceEEEEECCCcEEEEEeCCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEE
Confidence 1222222111
Q ss_pred -------------------------CEEEEEeC-CCeEEEEECCCCEEE-EEEecCCCceEEE--eecCCEEEEEeCCCe
Q psy3053 809 -------------------------EKVILGGA-LGMVYLVDLIQVQLL-KQVRAHKDAVLSL--HFDNCTMLVGCWDSC 859 (917)
Q Consensus 809 -------------------------~~lv~gs~-dG~I~vwdl~~~~~i-~~l~~h~~~V~si--s~dg~~Lasgs~DG~ 859 (917)
..+++++. +|.|++||+.+++.. ..+.+|...|+++ ++++++|++|+.||.
T Consensus 432 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~ 511 (615)
T 1pgu_A 432 LQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGK 511 (615)
T ss_dssp EETTTCCEEEEEECSSCEEEEEECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred EeccCCceeeecccCCCceEEEEcCCEEEEeecCCCeEEEEECCCccccccccCCccCceEEEEECCCCCEEEEcCCCCe
Confidence 23344444 555666666555444 4556788999998 569999999999999
Q ss_pred EEEEECcCCeEEEEecC-CCCCEEEEEEcC----------CCCEEEEEeCCCcEEEEecCcc
Q psy3053 860 VVIYDVECGRIVTELAG-HEDAISCVAWDE----------KRKRLISGNLVGAPKLYATEFY 910 (917)
Q Consensus 860 I~Iwdl~tg~~l~~l~~-h~~~V~slafSp----------dg~~LaSgs~DG~V~IWdl~~~ 910 (917)
|++||+.+++.+..+.+ |...|++++|+| ++++|++|+.||.|++|+++..
T Consensus 512 i~iw~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~ 573 (615)
T 1pgu_A 512 ILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRP 573 (615)
T ss_dssp EEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCT
T ss_pred EEEeeCCCCcceeEeecCCCCceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCC
Confidence 99999999999999988 999999999999 9999999999999999999863
No 29
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.4e-35 Score=329.88 Aligned_cols=310 Identities=14% Similarity=0.100 Sum_probs=265.3
Q ss_pred eeeeccCCcceEEEEEeCCCcEEEEEecCCceEEEeccCCceeeeeeccccceEEEEEeCCCCEEEEEecccEEEEEEec
Q psy3053 573 LHFCHSHKEAITAVAICGEGISVASVGRDAMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTMLVGCWDSCVVIYDVE 652 (917)
Q Consensus 573 ~~~l~~H~~~Vtsv~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~~~~~~~~V~sl~~spd~~~Lasgs~Dg~I~Iwdl~ 652 (917)
...+.+|.+.|++++|+|+|++|++++.||.|++||+.+++.+..+..|...|.+++|+|++++|++++.||.|++||+.
T Consensus 25 ~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~ 104 (369)
T 3zwl_B 25 AIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVS 104 (369)
T ss_dssp EEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETT
T ss_pred cEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCeeeEEeccCCCceeEEEecCCCCEEEEEECC-----CeEEEEeCCCCCCCcc----CCcceeeeccCCC--ceEEEEE
Q psy3053 653 CGRIVTELAGHEDAISCVAWDEKRKRLISGSWD-----CTVRVWNTGASWSHMK----PSKSLVSQLDLDN--RIKCLAI 721 (917)
Q Consensus 653 tg~~i~~l~~H~~~Vt~l~~spd~~~L~Sgs~D-----gtI~vWdl~~~~~~~~----~~~~~~~~~~h~~--~V~~l~~ 721 (917)
+++.+..+. |...|.+++|+|+++++++++.+ |.|.+||+........ ..........+.. .+.+++|
T Consensus 105 ~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (369)
T 3zwl_B 105 NGQCVATWK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGW 183 (369)
T ss_dssp TCCEEEEEE-CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEE
T ss_pred CCcEEEEee-cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEE
Confidence 999988887 88999999999999999999999 9999999876532110 1112223344555 8999999
Q ss_pred eCCCCEEEEEECCCeEEEEECCC-CeeeEEecCCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCce
Q psy3053 722 SKDNNQLAVGTEAGELIIWSLEN-HLMTQQLSDDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCNKVFEEKL 800 (917)
Q Consensus 722 spdg~~Lasgs~dG~I~iwDl~~-~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~tg~~i~~~~~~~~i 800 (917)
+|+++.+++|+.||.|.+||+++ +.....+. .|...|.+++|+|++.+|++++.|+.|++||+.+++.+........+
T Consensus 184 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~ 262 (369)
T 3zwl_B 184 STKGKYIIAGHKDGKISKYDVSNNYEYVDSID-LHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYETDCPL 262 (369)
T ss_dssp CGGGCEEEEEETTSEEEEEETTTTTEEEEEEE-CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSCE
T ss_pred cCCCCEEEEEcCCCEEEEEECCCCcEeEEEEe-cCCCceeEEEECCCCCEEEEecCCceEEEEECCCCceeeeecCCCCc
Confidence 99999999999999999999998 67777776 78999999999999999999999999999999999998888888888
Q ss_pred EEEEEeCCCE-EEEEeCCCeEEEEECCCCEEEEEEecCCCceEEEeecCCEEEEEeCCCeEEEEECcCCeEEEEecCCCC
Q psy3053 801 LCLSWAGEEK-VILGGALGMVYLVDLIQVQLLKQVRAHKDAVLSLHFDNCTMLVGCWDSCVVIYDVECGRIVTELAGHED 879 (917)
Q Consensus 801 ~~l~~s~~~~-lv~gs~dG~I~vwdl~~~~~i~~l~~h~~~V~sis~dg~~Lasgs~DG~I~Iwdl~tg~~l~~l~~h~~ 879 (917)
.++++++++. +++++.++...+|.... ......+++||..+++.+..+.+|.+
T Consensus 263 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~--------------------------~~~~~~i~~~d~~~~~~~~~~~~~~~ 316 (369)
T 3zwl_B 263 NTAVITPLKEFIILGGGQEAKDVTTTSA--------------------------NEGKFEARFYHKIFEEEIGRVQGHFG 316 (369)
T ss_dssp EEEEECSSSSEEEEEECCC---------------------------------------CEEEEEETTTCCEEEEEECCSS
T ss_pred eeEEecCCCceEEEeecCCCceEEEEec--------------------------CCCcceeEEEecCCCcchhheecccC
Confidence 8999887654 55666666555544311 11234799999999999999999999
Q ss_pred CEEEEEEcCCCCEEEEEeCCCcEEEEecCcc
Q psy3053 880 AISCVAWDEKRKRLISGNLVGAPKLYATEFY 910 (917)
Q Consensus 880 ~V~slafSpdg~~LaSgs~DG~V~IWdl~~~ 910 (917)
.|++++|+|++++|++|+.||.|++|+++..
T Consensus 317 ~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~ 347 (369)
T 3zwl_B 317 PLNTVAISPQGTSYASGGEDGFIRLHHFEKS 347 (369)
T ss_dssp CEEEEEECTTSSEEEEEETTSEEEEEEECHH
T ss_pred cEEEEEECCCCCEEEEEcCCCeEEEEECccc
Confidence 9999999999999999999999999999753
No 30
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.7e-35 Score=328.71 Aligned_cols=295 Identities=19% Similarity=0.218 Sum_probs=235.6
Q ss_pred CceeeeeeccccceEEEEEeCCCCEEEEEecccEEEEEEeccC--eeeEEe-cc-CCCceeEEEecCCCCEEEEEECCCe
Q psy3053 612 GRQERSAVLSSMTLSSLCILPDNCTMLVGCWDSCVVIYDVECG--RIVTEL-AG-HEDAISCVAWDEKRKRLISGSWDCT 687 (917)
Q Consensus 612 ~~~~~~~~~~~~~V~sl~~spd~~~Lasgs~Dg~I~Iwdl~tg--~~i~~l-~~-H~~~Vt~l~~spd~~~L~Sgs~Dgt 687 (917)
.+.++.+.+|..+|.+++|+|+ +||+|+.|++|++||+.++ +....+ .+ |.+.|.+++|+|++++|++|+.|++
T Consensus 4 ~~~~~~~~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~ 81 (330)
T 2hes_X 4 INLIKSLKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDST 81 (330)
T ss_dssp CEEEEEEECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSC
T ss_pred cccceeeccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCc
Confidence 4556778899999999999987 9999999999999999875 445555 44 9999999999999999999999999
Q ss_pred EEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEEEECCCeEEEEECCCC----eeeEEecCCCCCCeEEEE
Q psy3053 688 VRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGELIIWSLENH----LMTQQLSDDINASVNGVL 763 (917)
Q Consensus 688 I~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~dG~I~iwDl~~~----~~~~~l~~~h~~~V~~v~ 763 (917)
|++||+.................+|...|.+++|+|++++|++|+.||+|++||++.. +.+..+. +|...|.+++
T Consensus 82 v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~-~h~~~v~~v~ 160 (330)
T 2hes_X 82 VSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQ-EHSQDVKHVI 160 (330)
T ss_dssp EEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEEC-CCSSCEEEEE
T ss_pred EEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEec-cCCCceEEEE
Confidence 9999986431111112234456689999999999999999999999999999999432 4555666 7999999999
Q ss_pred EecCCCEEEEEeCCCeEEEEECCCC--eEEEEe-ecCCceEEEEEeCC--C-EEEEEeCCCeEEEEECCCC--------E
Q psy3053 764 FSEDGCRVLSCGNNCMLNVYDLTTG--MQVCNK-VFEEKLLCLSWAGE--E-KVILGGALGMVYLVDLIQV--------Q 829 (917)
Q Consensus 764 fspdg~~L~s~s~Dg~I~iwDl~tg--~~i~~~-~~~~~i~~l~~s~~--~-~lv~gs~dG~I~vwdl~~~--------~ 829 (917)
|+|++.+|++++.|++|++||..++ +.+..+ .+...|.+++|+++ + .+++|+.|+.|++||+..+ .
T Consensus 161 ~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~ 240 (330)
T 2hes_X 161 WHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWV 240 (330)
T ss_dssp ECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEE
T ss_pred ECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeE
Confidence 9999999999999999999998776 344443 46778999999986 3 5889999999999998754 4
Q ss_pred EEEEEec-CCCceEEEee-cCCEEEEEeCCCeEEEEECcCCe--EEEE-ecCCCC-CEEEEEEcC--CCCEEEEEeCCCc
Q psy3053 830 LLKQVRA-HKDAVLSLHF-DNCTMLVGCWDSCVVIYDVECGR--IVTE-LAGHED-AISCVAWDE--KRKRLISGNLVGA 901 (917)
Q Consensus 830 ~i~~l~~-h~~~V~sis~-dg~~Lasgs~DG~I~Iwdl~tg~--~l~~-l~~h~~-~V~slafSp--dg~~LaSgs~DG~ 901 (917)
....+.+ |...|.++++ .+..|++|+.||.|++|+..+++ .... ..+|.. .|.+++|+| ++++|+||+.||+
T Consensus 241 ~~~~~~~~h~~~v~~v~~s~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~las~s~Dg~ 320 (330)
T 2hes_X 241 CEAILPDVHKRQVYNVAWGFNGLIASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTILATGGDDGI 320 (330)
T ss_dssp EEEECCSCCSSCEEEEEECTTSCEEEEETTSCEEEEEEETTEEEEEEEESCTTTTSCEEEEEEC-----CCEEEEETTSE
T ss_pred EeeecccccccceEEEEEcCCCEEEEEeCCCEEEEEEcCCCceEEEeccccccccceEEEEEEecCCCceEEEEecCCCc
Confidence 4555555 8999999966 45589999999999999998874 3333 467887 899999999 7899999999999
Q ss_pred EEEEecCc
Q psy3053 902 PKLYATEF 909 (917)
Q Consensus 902 V~IWdl~~ 909 (917)
|++|+++.
T Consensus 321 v~~W~~~~ 328 (330)
T 2hes_X 321 VNFWSLEK 328 (330)
T ss_dssp EEEEEC--
T ss_pred EEEEEecc
Confidence 99999874
No 31
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=8.8e-36 Score=364.69 Aligned_cols=314 Identities=17% Similarity=0.255 Sum_probs=262.8
Q ss_pred ccceeeeccCCcceEEEEEeCCC-cEEEEEecCCceEEEeccCC-----ceeeeeeccccceEEEEEeCCCCEEEEEecc
Q psy3053 570 LEPLHFCHSHKEAITAVAICGEG-ISVASVGRDAMLKIHSLKTG-----RQERSAVLSSMTLSSLCILPDNCTMLVGCWD 643 (917)
Q Consensus 570 l~~~~~l~~H~~~Vtsv~fSpdg-~~Lasgs~Dg~I~IWd~~t~-----~~~~~~~~~~~~V~sl~~spd~~~Lasgs~D 643 (917)
++....+++|.+.|+++++++++ ++|+||+.||+|++|++.+. ...+.+.+|...|.+++|+|++++|++|+.|
T Consensus 372 l~~~~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~D 451 (694)
T 3dm0_A 372 LVLKGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWD 451 (694)
T ss_dssp SEEEEEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETT
T ss_pred cchhhhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCC
Confidence 34556789999999999999875 78999999999999998763 3456788899999999999999999999999
Q ss_pred cEEEEEEeccCeeeEEeccCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeC
Q psy3053 644 SCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISK 723 (917)
Q Consensus 644 g~I~Iwdl~tg~~i~~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp 723 (917)
|+|++||+.+++....+.+|.+.|.+++|+|++++|+|||.|++|++||...... ........+|...|.|++|+|
T Consensus 452 g~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~----~~~~~~~~~h~~~v~~~~~~~ 527 (694)
T 3dm0_A 452 GELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECK----YTISEGGEGHRDWVSCVRFSP 527 (694)
T ss_dssp SEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEE----EEECSSTTSCSSCEEEEEECS
T ss_pred CcEEEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcc----eeeccCCCCCCCcEEEEEEeC
Confidence 9999999999999999999999999999999999999999999999999754310 000011246888999999999
Q ss_pred CC--CEEEEEECCCeEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCceE
Q psy3053 724 DN--NQLAVGTEAGELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCNKVFEEKLL 801 (917)
Q Consensus 724 dg--~~Lasgs~dG~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~tg~~i~~~~~~~~i~ 801 (917)
++ ..+++|+.||+|++||+++++....+. +|.+.|.+++|+|+|++|++++.||.|++||+.+++.+........+.
T Consensus 528 ~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~-~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~v~ 606 (694)
T 3dm0_A 528 NTLQPTIVSASWDKTVKVWNLSNCKLRSTLA-GHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEANSVIH 606 (694)
T ss_dssp CSSSCEEEEEETTSCEEEEETTTCCEEEEEC-CCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECCBCSSCEE
T ss_pred CCCcceEEEEeCCCeEEEEECCCCcEEEEEc-CCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEecCCCcEE
Confidence 87 689999999999999999999888887 899999999999999999999999999999999999998888888999
Q ss_pred EEEEeCCCEEEEEeCCCeEEEEECCCCEEEEEEecCCCceEEEeecCCEEEEEeCCCeEEEEECcCCeEEEEecCCCCCE
Q psy3053 802 CLSWAGEEKVILGGALGMVYLVDLIQVQLLKQVRAHKDAVLSLHFDNCTMLVGCWDSCVVIYDVECGRIVTELAGHEDAI 881 (917)
Q Consensus 802 ~l~~s~~~~lv~gs~dG~I~vwdl~~~~~i~~l~~h~~~V~sis~dg~~Lasgs~DG~I~Iwdl~tg~~l~~l~~h~~~V 881 (917)
+++|++++.+++++.++.|++||+.+++.+..+..+......... ..+ ......+...+
T Consensus 607 ~~~~sp~~~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~---------~~~------------~~~~~~~~~~~ 665 (694)
T 3dm0_A 607 ALCFSPNRYWLCAATEHGIKIWDLESKSIVEDLKVDLKAEAEKAD---------NSG------------PAATKRKVIYC 665 (694)
T ss_dssp EEEECSSSSEEEEEETTEEEEEETTTTEEEEEECCCCC-------------------------------------CCCCE
T ss_pred EEEEcCCCcEEEEEcCCCEEEEECCCCCChhhhcccccccccccc---------ccc------------cccCCceeEEe
Confidence 999999999888888999999999999988877654322110000 000 00112233458
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEecCc
Q psy3053 882 SCVAWDEKRKRLISGNLVGAPKLYATEF 909 (917)
Q Consensus 882 ~slafSpdg~~LaSgs~DG~V~IWdl~~ 909 (917)
++++|||+|++|+||+.||.|++|++..
T Consensus 666 ~~l~~spdg~~l~sgs~Dg~i~iW~i~~ 693 (694)
T 3dm0_A 666 TSLNWSADGSTLFSGYTDGVIRVWGIGR 693 (694)
T ss_dssp EEEEECTTSSEEEEEETTSEEEEEEC--
T ss_pred eeEEEcCCCCEEEEEcCCCeEEEEeccC
Confidence 8999999999999999999999999864
No 32
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.2e-35 Score=373.25 Aligned_cols=213 Identities=10% Similarity=0.050 Sum_probs=180.8
Q ss_pred eccCCcceEEEEEeCCCcEEEEEecCCceEEEeccCCceeeeeeccccceEEEEEeCCCCEEEEEecccEEEEEEeccCe
Q psy3053 576 CHSHKEAITAVAICGEGISVASVGRDAMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTMLVGCWDSCVVIYDVECGR 655 (917)
Q Consensus 576 l~~H~~~Vtsv~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~~~~~~~~V~sl~~spd~~~Lasgs~Dg~I~Iwdl~tg~ 655 (917)
..+|.+.|++++|+|+|++||+|+.||+|++|+..+++..... .|..+|.+++|+| +++|++++.|++|++||+.+++
T Consensus 13 ~~gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~~~-~~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~~ 90 (902)
T 2oaj_A 13 KYGMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVIKL-EDRSAIKEMRFVK-GIYLVVINAKDTVYVLSLYSQK 90 (902)
T ss_dssp EEECSSCEEEEEEETTTTEEEEEETTSEEEEECSTTCEEEEEC-SSCCCEEEEEEET-TTEEEEEETTCEEEEEETTTCS
T ss_pred ccCCCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEEEEc-CCCCCEEEEEEcC-CCEEEEEECcCeEEEEECCCCc
Confidence 4589999999999999999999999999999998877665543 3677899999999 8899999999999999999999
Q ss_pred eeEEeccCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCC---cce-eeeccCCCceEEEEEeCC-CCEEEE
Q psy3053 656 IVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPS---KSL-VSQLDLDNRIKCLAISKD-NNQLAV 730 (917)
Q Consensus 656 ~i~~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~---~~~-~~~~~h~~~V~~l~~spd-g~~Las 730 (917)
.+..+. |.+.|++++|+|++++|++|+.||+|++||+.++....... ... ....+|.+.|.+++|+|+ +..+++
T Consensus 91 ~~~~~~-~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~ 169 (902)
T 2oaj_A 91 VLTTVF-VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLI 169 (902)
T ss_dssp EEEEEE-CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEE
T ss_pred EEEEEc-CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCCEEEE
Confidence 988886 77899999999999999999999999999998762110000 000 123568899999999996 578999
Q ss_pred EECCCeEEEEECCCCeeeEEecCC-----------------CCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeEEE
Q psy3053 731 GTEAGELIIWSLENHLMTQQLSDD-----------------INASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVC 792 (917)
Q Consensus 731 gs~dG~I~iwDl~~~~~~~~l~~~-----------------h~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~tg~~i~ 792 (917)
|+.||.| +||+++++....+... |...|.+++|+|+|.+|++++.||.|++||+++++.+.
T Consensus 170 g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~~ 247 (902)
T 2oaj_A 170 SYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGHMIM 247 (902)
T ss_dssp ECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTCCEEE
T ss_pred EeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEE
Confidence 9999999 9999999988877621 24779999999999999999999999999998776543
No 33
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=2.2e-35 Score=352.88 Aligned_cols=317 Identities=16% Similarity=0.230 Sum_probs=285.1
Q ss_pred ccCCcceEEEEEeCCCcEEEEEecCCceEEEeccCC----ceeeeeeccccc-eEEEEEeC--CCCEEEEEecccEEEEE
Q psy3053 577 HSHKEAITAVAICGEGISVASVGRDAMLKIHSLKTG----RQERSAVLSSMT-LSSLCILP--DNCTMLVGCWDSCVVIY 649 (917)
Q Consensus 577 ~~H~~~Vtsv~fSpdg~~Lasgs~Dg~I~IWd~~t~----~~~~~~~~~~~~-V~sl~~sp--d~~~Lasgs~Dg~I~Iw 649 (917)
..|.+.|++++|+|+|++|++++ ++.|++|++.++ +....+.+|... |.+++|+| ++++|++|+.||.|++|
T Consensus 15 ~~~~~~v~~~~~spdg~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw 93 (615)
T 1pgu_A 15 STQRNFTTHLSYDPTTNAIAYPC-GKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVW 93 (615)
T ss_dssp CCCTTCCCCCEEETTTTEEEEEE-TTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEE
T ss_pred CCccCceeEEEECCCCCEEEEec-CCeEEEEECCCCCCccccceEEecCCCceEEEEEECcCCCCCEEEEecCCCEEEEE
Confidence 46889999999999999999998 899999999998 888999999999 99999999 99999999999999999
Q ss_pred EeccC--------eeeEEeccCCCceeEEEecCCCCEEEEEECC----CeEEEEeCCCCCCCccCCcceeeeccCCCceE
Q psy3053 650 DVECG--------RIVTELAGHEDAISCVAWDEKRKRLISGSWD----CTVRVWNTGASWSHMKPSKSLVSQLDLDNRIK 717 (917)
Q Consensus 650 dl~tg--------~~i~~l~~H~~~Vt~l~~spd~~~L~Sgs~D----gtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~ 717 (917)
|+.++ +....+.+|...|.+++|+|++++|++++.| +.|.+||.. .......+|...|.
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d~~---------~~~~~~~~~~~~v~ 164 (615)
T 1pgu_A 94 GWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSG---------NSLGEVSGHSQRIN 164 (615)
T ss_dssp EEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTC---------CEEEECCSCSSCEE
T ss_pred eCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEECC---------CcceeeecCCccEE
Confidence 99855 6778888999999999999999999999988 799999832 23445668999999
Q ss_pred EEEEeCCCC-EEEEEECCCeEEEEECCCCeeeEEecCCCCC---CeEEEEEecC-CCEEEEEeCCCeEEEEECCCCeEEE
Q psy3053 718 CLAISKDNN-QLAVGTEAGELIIWSLENHLMTQQLSDDINA---SVNGVLFSED-GCRVLSCGNNCMLNVYDLTTGMQVC 792 (917)
Q Consensus 718 ~l~~spdg~-~Lasgs~dG~I~iwDl~~~~~~~~l~~~h~~---~V~~v~fspd-g~~L~s~s~Dg~I~iwDl~tg~~i~ 792 (917)
+++|+|+++ .+++|+.||.|++||+.+++.+..+. .|.. .|.+++|+|+ ++++++++.||.|++||+.+++.+.
T Consensus 165 ~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~ 243 (615)
T 1pgu_A 165 ACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDR-THHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLK 243 (615)
T ss_dssp EEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEEC-SSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEE
T ss_pred EEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeec-ccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeE
Confidence 999999997 89999999999999999999998887 7788 9999999999 9999999999999999999999988
Q ss_pred Ee-----ecCCceEEEEEeCCCEEEEEeCCCeEEEEECCCCEEEEEEecCC----CceEEE-eecCCEEEEEeCCCeEEE
Q psy3053 793 NK-----VFEEKLLCLSWAGEEKVILGGALGMVYLVDLIQVQLLKQVRAHK----DAVLSL-HFDNCTMLVGCWDSCVVI 862 (917)
Q Consensus 793 ~~-----~~~~~i~~l~~s~~~~lv~gs~dG~I~vwdl~~~~~i~~l~~h~----~~V~si-s~dg~~Lasgs~DG~I~I 862 (917)
.+ .+...+.+++|+....+++++.+|.|++||+.+++.+..+..+. ..+.++ .++++.+++|+.||.|++
T Consensus 244 ~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~i~~ 323 (615)
T 1pgu_A 244 YIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNF 323 (615)
T ss_dssp ECCBTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEE
T ss_pred EecccccccCCceEEEEEcCCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeCCCCeEEEEECCCCEEE
Confidence 87 67889999999844478899999999999999999999998773 556666 449999999999999999
Q ss_pred EECcCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecC
Q psy3053 863 YDVECGRIVTELAGHEDAISCVAWDEKRKRLISGNLVGAPKLYATE 908 (917)
Q Consensus 863 wdl~tg~~l~~l~~h~~~V~slafSpdg~~LaSgs~DG~V~IWdl~ 908 (917)
||+.+++.+..+.+|.+.|++++| |+ +++++.||.|++|++.
T Consensus 324 ~d~~~~~~~~~~~~~~~~v~~~~~-~~---l~~~~~dg~i~~w~~~ 365 (615)
T 1pgu_A 324 YELGHDEVLKTISGHNKGITALTV-NP---LISGSYDGRIMEWSSS 365 (615)
T ss_dssp EETTEEEEEEEECCCSSCEEEEET-TT---TEEEETTSCEEETTTT
T ss_pred EECCCCcEEEEEeCCCCCEEEEEe-cC---cEEECCCCeEEEEEch
Confidence 999999999999999999999999 77 7777777777777764
No 34
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=1.3e-35 Score=385.98 Aligned_cols=332 Identities=15% Similarity=0.224 Sum_probs=292.0
Q ss_pred eeeeccCCcceEEEEEeCCCcEEEEEecCCceEEEeccCCceeeeeeccccceEEEEEeCCCCEEEEEecccEEEEEEec
Q psy3053 573 LHFCHSHKEAITAVAICGEGISVASVGRDAMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTMLVGCWDSCVVIYDVE 652 (917)
Q Consensus 573 ~~~l~~H~~~Vtsv~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~~~~~~~~V~sl~~spd~~~Lasgs~Dg~I~Iwdl~ 652 (917)
...+.+|.+.|++++|+|+|+++++|+.||+|++||+.+++.+..+.+|...|.+++|+|+++++++|+.||.|++||+.
T Consensus 608 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~ 687 (1249)
T 3sfz_A 608 RLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSA 687 (1249)
T ss_dssp SEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred eEEEecccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECC
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCeeeEEeccCCCceeEEEecC--CCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEE
Q psy3053 653 CGRIVTELAGHEDAISCVAWDE--KRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAV 730 (917)
Q Consensus 653 tg~~i~~l~~H~~~Vt~l~~sp--d~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Las 730 (917)
+++.+..+.+|...|++++|+| ++..+++|+.||+|++||+.++ .......+|...|.+++|+|+++.+++
T Consensus 688 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~-------~~~~~~~~h~~~v~~~~~sp~~~~l~s 760 (1249)
T 3sfz_A 688 TGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQK-------ECRNTMFGHTNSVNHCRFSPDDELLAS 760 (1249)
T ss_dssp TCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSS-------SEEEEECCCSSCEEEEEECSSTTEEEE
T ss_pred CCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCc-------chhheecCCCCCEEEEEEecCCCEEEE
Confidence 9999999999999999999999 5568999999999999999876 344556789999999999999999999
Q ss_pred EECCCeEEEEECCCCeeeEEe------------------------------------------------------cCCCC
Q psy3053 731 GTEAGELIIWSLENHLMTQQL------------------------------------------------------SDDIN 756 (917)
Q Consensus 731 gs~dG~I~iwDl~~~~~~~~l------------------------------------------------------~~~h~ 756 (917)
|+.||.|++||+.++.....+ ..+|.
T Consensus 761 ~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~ 840 (1249)
T 3sfz_A 761 CSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHH 840 (1249)
T ss_dssp EESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSS
T ss_pred EECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCC
Confidence 999999999999876544332 12567
Q ss_pred CCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeEEEEee-cCCceEEEEEeCCC-EEEEEeCCCeEEEEECCCCE-----
Q psy3053 757 ASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCNKV-FEEKLLCLSWAGEE-KVILGGALGMVYLVDLIQVQ----- 829 (917)
Q Consensus 757 ~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~tg~~i~~~~-~~~~i~~l~~s~~~-~lv~gs~dG~I~vwdl~~~~----- 829 (917)
..|.+++|+|++..+++++.||.|++||+.++..+.... +...+.+++|++++ .+++++.||.|++|++.+..
T Consensus 841 ~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~ 920 (1249)
T 3sfz_A 841 STIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAI 920 (1249)
T ss_dssp SCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSS
T ss_pred CceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCccceEEEEECCCCCEEEEEeCCCeEEEEEccccceeeee
Confidence 789999999999999999999999999999998876654 66789999999876 58899999999999975310
Q ss_pred ---------------E---------EEEE--------ecCCCceEEE--eecCCEEEEEeCCCeEEEEECcCCeEEEEec
Q psy3053 830 ---------------L---------LKQV--------RAHKDAVLSL--HFDNCTMLVGCWDSCVVIYDVECGRIVTELA 875 (917)
Q Consensus 830 ---------------~---------i~~l--------~~h~~~V~si--s~dg~~Lasgs~DG~I~Iwdl~tg~~l~~l~ 875 (917)
. .... ..+...+.++ +++++++++|+.||.|++|++.+++....+.
T Consensus 921 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~ 1000 (1249)
T 3sfz_A 921 VLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGV 1000 (1249)
T ss_dssp SEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECC
T ss_pred cccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecc
Confidence 0 0001 1123455555 7799999999999999999999999999999
Q ss_pred CCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcce
Q psy3053 876 GHEDAISCVAWDEKRKRLISGNLVGAPKLYATEFYL 911 (917)
Q Consensus 876 ~h~~~V~slafSpdg~~LaSgs~DG~V~IWdl~~~l 911 (917)
+|.+.|++++|+|+|++|++++.||.|++|++....
T Consensus 1001 ~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~ 1036 (1249)
T 3sfz_A 1001 GHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGD 1036 (1249)
T ss_dssp CCSSCCCCEEECSSSSCEEEECSSSBEEEEETTTTE
T ss_pred cCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCc
Confidence 999999999999999999999999999999998653
No 35
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=2.1e-35 Score=366.35 Aligned_cols=335 Identities=15% Similarity=0.184 Sum_probs=292.7
Q ss_pred ccceeeeccCCcceEEEEEeCCCcEEEEEecCCceEEEeccCCceeeeeeccccceEEEEEeCCCCEEEEEecccEEEEE
Q psy3053 570 LEPLHFCHSHKEAITAVAICGEGISVASVGRDAMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTMLVGCWDSCVVIY 649 (917)
Q Consensus 570 l~~~~~l~~H~~~Vtsv~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~~~~~~~~V~sl~~spd~~~Lasgs~Dg~I~Iw 649 (917)
++..+.+.+|.+.|++++|+|+|++|++|+.||.|++||+.+++.+..+..|..+|.+++|+|++++|++|+.||.|++|
T Consensus 3 l~~~~~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw 82 (814)
T 3mkq_A 3 LDIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVF 82 (814)
T ss_dssp CCCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEE
T ss_pred cccceeeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEE
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeccCeeeEEeccCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeC-CCCEE
Q psy3053 650 DVECGRIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISK-DNNQL 728 (917)
Q Consensus 650 dl~tg~~i~~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp-dg~~L 728 (917)
|+.+++.+..+.+|.+.|++++|+|++++|++|+.||+|++||+.++ ........+|...|.+++|+| ++..+
T Consensus 83 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~------~~~~~~~~~~~~~v~~~~~~p~~~~~l 156 (814)
T 3mkq_A 83 NYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENN------WALEQTFEGHEHFVMCVAFNPKDPSTF 156 (814)
T ss_dssp ETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGT------SEEEEEEECCSSCEEEEEEETTEEEEE
T ss_pred ECCCCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCC------ceEEEEEcCCCCcEEEEEEEcCCCCEE
Confidence 99999999999999999999999999999999999999999998764 123344567899999999999 88999
Q ss_pred EEEECCCeEEEEECCCCeeeEEecCCCCCCeEEEEEec--CCCEEEEEeCCCeEEEEECCCCeEEEEee-cCCceEEEEE
Q psy3053 729 AVGTEAGELIIWSLENHLMTQQLSDDINASVNGVLFSE--DGCRVLSCGNNCMLNVYDLTTGMQVCNKV-FEEKLLCLSW 805 (917)
Q Consensus 729 asgs~dG~I~iwDl~~~~~~~~l~~~h~~~V~~v~fsp--dg~~L~s~s~Dg~I~iwDl~tg~~i~~~~-~~~~i~~l~~ 805 (917)
++|+.||.|++||+.++.....+...+...+.+++|+| ++..+++++.||.|++||+.+++.+.... +...+.+++|
T Consensus 157 ~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~ 236 (814)
T 3mkq_A 157 ASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVF 236 (814)
T ss_dssp EEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECCSSCEEEEEE
T ss_pred EEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCCCCCEEEEEE
Confidence 99999999999999998888887756668999999999 99999999999999999999998887765 6678999999
Q ss_pred eCCC-EEEEEeCCCeEEEEECCCCEEEEEEecCCCceEEEe--ecCCE-EEEEeCCCeEEEEECcCCe----------EE
Q psy3053 806 AGEE-KVILGGALGMVYLVDLIQVQLLKQVRAHKDAVLSLH--FDNCT-MLVGCWDSCVVIYDVECGR----------IV 871 (917)
Q Consensus 806 s~~~-~lv~gs~dG~I~vwdl~~~~~i~~l~~h~~~V~sis--~dg~~-Lasgs~DG~I~Iwdl~tg~----------~l 871 (917)
+|++ .+++++.||.|++||+.+++.+..+..|...+.+++ |++.. +++++.++.+.+|++..+. .+
T Consensus 237 ~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 316 (814)
T 3mkq_A 237 HPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGNDEPTLSLDPVGKLV 316 (814)
T ss_dssp CSSSSEEEEEETTSCEEEEETTTCSEEEEECCSSSSEEEEEECTTCGGGEEEEEETTEEEEEECSCCSCCEEECSSSEEE
T ss_pred cCCCCEEEEEeCCCeEEEEECCCCcEEEEeecCCCcEEEEEEccCCCceEEEEEeCCCEEEEEcCCCCceeEECCCCCEE
Confidence 9876 588899999999999999999999999999999995 45552 3444456678889875432 22
Q ss_pred E---------------------------------EecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcce
Q psy3053 872 T---------------------------------ELAGHEDAISCVAWDEKRKRLISGNLVGAPKLYATEFYL 911 (917)
Q Consensus 872 ~---------------------------------~l~~h~~~V~slafSpdg~~LaSgs~DG~V~IWdl~~~l 911 (917)
. .+..+...+.+++|+|+|+++++++ ||.+.+|++....
T Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~-~~~~~i~~~~~~~ 388 (814)
T 3mkq_A 317 WSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTKELGSVDVFPQSLAHSPNGRFVTVVG-DGEYVIYTALAWR 388 (814)
T ss_dssp EECCTTSCTTCEEEEECCSCCCCCSSSCBCCCCEEECCCSSCCSEEEECTTSSEEEEEE-TTEEEEEETTTTE
T ss_pred EECcccccceeeeeeecccccccccCccceeeeecCCCCccCCceeEECCCCCEEEEec-CCEEEEEECcccc
Confidence 1 1123445688999999999999998 8999999987543
No 36
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=6.4e-35 Score=329.82 Aligned_cols=307 Identities=17% Similarity=0.203 Sum_probs=254.8
Q ss_pred cceeeeccCCcceEEEEEeCCCcEEEEEecCCceEEEeccCCc------eeeeeeccccceEEEEEeCC----C---CEE
Q psy3053 571 EPLHFCHSHKEAITAVAICGEGISVASVGRDAMLKIHSLKTGR------QERSAVLSSMTLSSLCILPD----N---CTM 637 (917)
Q Consensus 571 ~~~~~l~~H~~~Vtsv~fSpdg~~Lasgs~Dg~I~IWd~~t~~------~~~~~~~~~~~V~sl~~spd----~---~~L 637 (917)
.....+.+|.+.|++++|+| ++|++|+.||.|++|++.+++ ....+..|..+|.+++|+|+ + ++|
T Consensus 7 ~~~~~~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l 84 (397)
T 1sq9_A 7 ATANAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLV 84 (397)
T ss_dssp EEEEESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEE
T ss_pred hhhhhhhhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEE
Confidence 34567889999999999999 799999999999999999988 77888899999999999999 9 999
Q ss_pred EEEecccEEEEEEeccCee-----eEEeccC-----CCceeEEEec----CCCCE-EEEEECCCeEEEEeCCC------C
Q psy3053 638 LVGCWDSCVVIYDVECGRI-----VTELAGH-----EDAISCVAWD----EKRKR-LISGSWDCTVRVWNTGA------S 696 (917)
Q Consensus 638 asgs~Dg~I~Iwdl~tg~~-----i~~l~~H-----~~~Vt~l~~s----pd~~~-L~Sgs~DgtI~vWdl~~------~ 696 (917)
++|+.||.|++|++.+++. ...+.+| ...|.+++|+ |+++. |++|+.||.|++||+.. .
T Consensus 85 ~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 164 (397)
T 1sq9_A 85 ATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNS 164 (397)
T ss_dssp EEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHH
T ss_pred EEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCcccccccc
Confidence 9999999999999999887 8888888 5999999999 99999 99999999999999977 3
Q ss_pred CCCccCCcceeee-------ccCCCceEEEEEeCCCCEEEEEECCCeEEEEECCCCeeeEEecCC---C---CCCeEEEE
Q psy3053 697 WSHMKPSKSLVSQ-------LDLDNRIKCLAISKDNNQLAVGTEAGELIIWSLENHLMTQQLSDD---I---NASVNGVL 763 (917)
Q Consensus 697 ~~~~~~~~~~~~~-------~~h~~~V~~l~~spdg~~Lasgs~dG~I~iwDl~~~~~~~~l~~~---h---~~~V~~v~ 763 (917)
.... ....... ..|...|.+++|+|++ .+++|+.||.|++||+++++.+..+. . | ...|.+++
T Consensus 165 ~~~~--~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~h~~~~~~i~~i~ 240 (397)
T 1sq9_A 165 LTLN--WSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFE-SQHSMINNSNSIRSVK 240 (397)
T ss_dssp TTTC--CCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEE-CCC---CCCCCEEEEE
T ss_pred ceee--ccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEEe-ccccccccCCccceEE
Confidence 2111 0010022 4578899999999999 99999999999999999999988887 5 7 89999999
Q ss_pred EecCCCEEEEEeCC---CeEEEEECCCCeEEEEeecCCceEEEEEeCCCEEEEEeCCCeEEEEECCCCEEEEEEecCCCc
Q psy3053 764 FSEDGCRVLSCGNN---CMLNVYDLTTGMQVCNKVFEEKLLCLSWAGEEKVILGGALGMVYLVDLIQVQLLKQVRAHKDA 840 (917)
Q Consensus 764 fspdg~~L~s~s~D---g~I~iwDl~tg~~i~~~~~~~~i~~l~~s~~~~lv~gs~dG~I~vwdl~~~~~i~~l~~h~~~ 840 (917)
|+|++++|++++.| |.|++||+.+++.+..+..... +. ........|...
T Consensus 241 ~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~-------~~--------------------~~~~~~~~~~~~ 293 (397)
T 1sq9_A 241 FSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTH-------SS--------------------QASLGEFAHSSW 293 (397)
T ss_dssp ECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC-----------------------------------CCBSBSSC
T ss_pred ECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCcc-------cc--------------------cccccccccCCc
Confidence 99999999999999 9999999988765543321100 00 000001126777
Q ss_pred eEEE--eecCCEEEEEeCCCeEEEEECcCCeEEEEec------CC---------------CCCEEEEEEcCCC-------
Q psy3053 841 VLSL--HFDNCTMLVGCWDSCVVIYDVECGRIVTELA------GH---------------EDAISCVAWDEKR------- 890 (917)
Q Consensus 841 V~si--s~dg~~Lasgs~DG~I~Iwdl~tg~~l~~l~------~h---------------~~~V~slafSpdg------- 890 (917)
|.++ ++++++|++|+.||.|++||+.+++.+..+. +| ..+|++++|+|++
T Consensus 294 v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~ 373 (397)
T 1sq9_A 294 VMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGA 373 (397)
T ss_dssp EEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTC
T ss_pred EEEEEECCCCCEEEEEeCCCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccc
Confidence 8777 5578899999999999999999999999998 78 9999999999998
Q ss_pred ---CEEEEEeCCCcEEEEecCcc
Q psy3053 891 ---KRLISGNLVGAPKLYATEFY 910 (917)
Q Consensus 891 ---~~LaSgs~DG~V~IWdl~~~ 910 (917)
++|++|+.||.|++|++++.
T Consensus 374 ~~~~~l~s~~~dg~i~iw~~~~g 396 (397)
T 1sq9_A 374 DLNESLCCVCLDRSIRWFREAGG 396 (397)
T ss_dssp TTSCEEEEEETTTEEEEEEEEC-
T ss_pred cccceEEEecCCCcEEEEEcCCC
Confidence 79999999999999999753
No 37
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=1.6e-35 Score=333.02 Aligned_cols=287 Identities=12% Similarity=0.182 Sum_probs=232.4
Q ss_pred eeccCCcceEEEEEeCCCcEEEEEec------CCceEEEeccCCceee----eeeccccceEEEEEeCCCCEEEEEeccc
Q psy3053 575 FCHSHKEAITAVAICGEGISVASVGR------DAMLKIHSLKTGRQER----SAVLSSMTLSSLCILPDNCTMLVGCWDS 644 (917)
Q Consensus 575 ~l~~H~~~Vtsv~fSpdg~~Lasgs~------Dg~I~IWd~~t~~~~~----~~~~~~~~V~sl~~spd~~~Lasgs~Dg 644 (917)
...+|.+.|++++|||||++|++|+. |+.|++|+..++.... ....|...|.+++|+|++. +++++.||
T Consensus 37 ~p~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~-~l~~s~dg 115 (357)
T 4g56_B 37 APACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKG-ILVASDSG 115 (357)
T ss_dssp ---CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTE-EEEEETTS
T ss_pred CcccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCC-EEEEECCC
Confidence 34679999999999999999999997 7789999987765433 3345778899999999985 55678899
Q ss_pred EEEEEEeccCeeeE----EeccCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEE
Q psy3053 645 CVVIYDVECGRIVT----ELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLA 720 (917)
Q Consensus 645 ~I~Iwdl~tg~~i~----~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~ 720 (917)
+|++||+.+++... ...+|.+.|++++|+|++++|++|+.||+|++||+.++ ........|...|.+++
T Consensus 116 ~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~-------~~~~~~~~h~~~v~~v~ 188 (357)
T 4g56_B 116 AVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQK-------AVLKSYNAHSSEVNCVA 188 (357)
T ss_dssp CEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTT-------EEEEEECCCSSCEEEEE
T ss_pred EEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCC-------cEEEEEcCCCCCEEEEE
Confidence 99999999886543 34589999999999999999999999999999999876 34455668999999999
Q ss_pred EeCCCC-EEEEEECCCeEEEEECCCCeeeEEec-CCCCCCeEEEEEecC-CCEEEEEeCCCeEEEEECCCCeEEEEee-c
Q psy3053 721 ISKDNN-QLAVGTEAGELIIWSLENHLMTQQLS-DDINASVNGVLFSED-GCRVLSCGNNCMLNVYDLTTGMQVCNKV-F 796 (917)
Q Consensus 721 ~spdg~-~Lasgs~dG~I~iwDl~~~~~~~~l~-~~h~~~V~~v~fspd-g~~L~s~s~Dg~I~iwDl~tg~~i~~~~-~ 796 (917)
|++++. .+++++.||.|++||+++++....+. ..+...+.+++|+|+ +.++++|+.|+.|++||+++++.+..+. +
T Consensus 189 ~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~ 268 (357)
T 4g56_B 189 ACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVH 268 (357)
T ss_dssp ECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEECCC
T ss_pred EccCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCCcEeEEEecc
Confidence 999874 78999999999999999988776554 246678999999997 5688899999999999999988776654 5
Q ss_pred CCceEEEEEeCCC--EEEEEeCCCeEEEEECCCCEEEEEEecCCCceEEEe--e-cCCEEEEEeCCCeEEEEECcCCeE
Q psy3053 797 EEKLLCLSWAGEE--KVILGGALGMVYLVDLIQVQLLKQVRAHKDAVLSLH--F-DNCTMLVGCWDSCVVIYDVECGRI 870 (917)
Q Consensus 797 ~~~i~~l~~s~~~--~lv~gs~dG~I~vwdl~~~~~i~~l~~h~~~V~sis--~-dg~~Lasgs~DG~I~Iwdl~tg~~ 870 (917)
...|.+++|+|++ .+++|+.||.|++||+.+++.+..+ +|.+.|++++ | ++.+|++|+.||+|++|++.+...
T Consensus 269 ~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~-~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~~~~ 346 (357)
T 4g56_B 269 SQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDL-SHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPSEGR 346 (357)
T ss_dssp SSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEEC-CCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC----
T ss_pred ceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEEC-CCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCc
Confidence 6789999999764 4788999999999999999887655 7999999995 4 789999999999999999975443
No 38
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=1.5e-34 Score=322.56 Aligned_cols=287 Identities=19% Similarity=0.233 Sum_probs=237.1
Q ss_pred eeeeeeccccceEEEEE-----eC-CCCEEEEEecccEEEEEEeccC-------eeeEEeccCCCceeEEEecCCCCEEE
Q psy3053 614 QERSAVLSSMTLSSLCI-----LP-DNCTMLVGCWDSCVVIYDVECG-------RIVTELAGHEDAISCVAWDEKRKRLI 680 (917)
Q Consensus 614 ~~~~~~~~~~~V~sl~~-----sp-d~~~Lasgs~Dg~I~Iwdl~tg-------~~i~~l~~H~~~Vt~l~~spd~~~L~ 680 (917)
....+.+|...|.+++| ++ ++++|++|+.|++|++||+.++ .....+.+|...|++++|+|++.+++
T Consensus 13 ~~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~ 92 (343)
T 2xzm_R 13 KRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAI 92 (343)
T ss_dssp EEEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEEE
T ss_pred eeeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEEE
Confidence 45678899999999999 66 8999999999999999999753 45677899999999999999999999
Q ss_pred EEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEEEECCCeEEEEECCCCeeeEEe-cCCCCCCe
Q psy3053 681 SGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGELIIWSLENHLMTQQL-SDDINASV 759 (917)
Q Consensus 681 Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~dG~I~iwDl~~~~~~~~l-~~~h~~~V 759 (917)
+|+.|++|++||+.++ .......+|...|.+++|+|+++.+++|+.||.|++||+......... ...|...|
T Consensus 93 s~s~D~~v~lwd~~~~-------~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v 165 (343)
T 2xzm_R 93 SSSWDKTLRLWDLRTG-------TTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAEKENHSDWV 165 (343)
T ss_dssp EEETTSEEEEEETTSS-------CEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSCEEEECCTTTSCSSCE
T ss_pred EEcCCCcEEEEECCCC-------cEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCceeeeecccCCCcee
Confidence 9999999999999876 344556789999999999999999999999999999999854333222 12578899
Q ss_pred EEEEEecCC----------CEEEEEeCCCeEEEEECCCCeEEE-EeecCCceEEEEEeCCC-EEEEEeCCCeEEEEECCC
Q psy3053 760 NGVLFSEDG----------CRVLSCGNNCMLNVYDLTTGMQVC-NKVFEEKLLCLSWAGEE-KVILGGALGMVYLVDLIQ 827 (917)
Q Consensus 760 ~~v~fspdg----------~~L~s~s~Dg~I~iwDl~tg~~i~-~~~~~~~i~~l~~s~~~-~lv~gs~dG~I~vwdl~~ 827 (917)
.+++|+|++ .++++++.|+.|++||.. +.... ...+...+.+++|+|++ .+++|+.||.|++||+..
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~-~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~ 244 (343)
T 2xzm_R 166 SCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTN-FQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILN 244 (343)
T ss_dssp EEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETT-TEEEEEEECCSSCEEEEEECTTSSEEEEEETTCEEEEEESSC
T ss_pred eeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCC-CceeEEEcCccccceEEEECCCCCEEEEEcCCCeEEEEECCC
Confidence 999999987 789999999999999954 44443 34577889999999876 588899999999999954
Q ss_pred -CEEEEEEecCCCceEEE--eecCCEEEEEeCCCeEEEEECcCCeEEE--Eec-----------CCCCCEEEEEEcCCCC
Q psy3053 828 -VQLLKQVRAHKDAVLSL--HFDNCTMLVGCWDSCVVIYDVECGRIVT--ELA-----------GHEDAISCVAWDEKRK 891 (917)
Q Consensus 828 -~~~i~~l~~h~~~V~si--s~dg~~Lasgs~DG~I~Iwdl~tg~~l~--~l~-----------~h~~~V~slafSpdg~ 891 (917)
......+ .+...|.++ +|++.++++| .|+.|++|++.+++... .+. +|...|.+++|+|+|+
T Consensus 245 ~~~~~~~~-~~~~~v~~v~~sp~~~~la~~-~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~ 322 (343)
T 2xzm_R 245 LTYPQREF-DAGSTINQIAFNPKLQWVAVG-TDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGK 322 (343)
T ss_dssp CSSCSEEE-ECSSCEEEEEECSSSCEEEEE-ESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECSSSC
T ss_pred Ccccceee-cCCCcEEEEEECCCCCEEEEE-CCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEECCCCC
Confidence 3333333 345568877 6678777654 57789999998776433 443 6888999999999999
Q ss_pred EEEEEeCCCcEEEEecCcc
Q psy3053 892 RLISGNLVGAPKLYATEFY 910 (917)
Q Consensus 892 ~LaSgs~DG~V~IWdl~~~ 910 (917)
+|++|+.||.|++|+++..
T Consensus 323 ~l~sg~~Dg~v~~w~~~~g 341 (343)
T 2xzm_R 323 KLFAGFTDGVIRTFSFETS 341 (343)
T ss_dssp CEEEEETTSEEEEEEEEEE
T ss_pred eEEEecCCceEEEEEEEcc
Confidence 9999999999999998753
No 39
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=7.4e-34 Score=313.36 Aligned_cols=292 Identities=19% Similarity=0.279 Sum_probs=250.3
Q ss_pred cCCceeeeeeccccceEEEEEeCC-CCEEEEEecccEEEEEEeccCe-----eeEEeccCCCceeEEEecCCCCEEEEEE
Q psy3053 610 KTGRQERSAVLSSMTLSSLCILPD-NCTMLVGCWDSCVVIYDVECGR-----IVTELAGHEDAISCVAWDEKRKRLISGS 683 (917)
Q Consensus 610 ~t~~~~~~~~~~~~~V~sl~~spd-~~~Lasgs~Dg~I~Iwdl~tg~-----~i~~l~~H~~~Vt~l~~spd~~~L~Sgs 683 (917)
++.+...++.+|.+.|++++|+|+ +++||+|+.||+|++||+.+++ ....+.+|...|++++|+|++++|++|+
T Consensus 26 ~~~~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~ 105 (340)
T 4aow_A 26 EQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGS 105 (340)
T ss_dssp CEEEEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred CceEEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEc
Confidence 334455678999999999999997 6899999999999999997653 4677899999999999999999999999
Q ss_pred CCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEEEECCCeEEEEECCCCeeeEEecCCCCCCeEEEE
Q psy3053 684 WDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGELIIWSLENHLMTQQLSDDINASVNGVL 763 (917)
Q Consensus 684 ~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~dG~I~iwDl~~~~~~~~l~~~h~~~V~~v~ 763 (917)
.|+.|++|+.... ........+...+....+++++..+++|+.||.+++||+............|...+..++
T Consensus 106 ~d~~i~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~ 178 (340)
T 4aow_A 106 WDGTLRLWDLTTG-------TTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVR 178 (340)
T ss_dssp TTSEEEEEETTTT-------EEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEE
T ss_pred ccccceEEeeccc-------ceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceE
Confidence 9999999998765 334445567788899999999999999999999999999887766665558899999999
Q ss_pred EecCC--CEEEEEeCCCeEEEEECCCCeEEEEee-cCCceEEEEEeCCC-EEEEEeCCCeEEEEECCCCEEEEEEecCCC
Q psy3053 764 FSEDG--CRVLSCGNNCMLNVYDLTTGMQVCNKV-FEEKLLCLSWAGEE-KVILGGALGMVYLVDLIQVQLLKQVRAHKD 839 (917)
Q Consensus 764 fspdg--~~L~s~s~Dg~I~iwDl~tg~~i~~~~-~~~~i~~l~~s~~~-~lv~gs~dG~I~vwdl~~~~~i~~l~~h~~ 839 (917)
|++++ ..+++++.|+.|++||+.+++...... +...|.+++++|++ .+++|+.||.|++||+.+.+.+..+..+ .
T Consensus 179 ~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~-~ 257 (340)
T 4aow_A 179 FSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGG-D 257 (340)
T ss_dssp ECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECS-S
T ss_pred EccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeecCC-c
Confidence 99864 578899999999999999998877654 67789999999865 5788999999999999999999888755 5
Q ss_pred ceEEE--eecCCEEEEEeCCCeEEEEECcCCeEEEEec---------CCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecC
Q psy3053 840 AVLSL--HFDNCTMLVGCWDSCVVIYDVECGRIVTELA---------GHEDAISCVAWDEKRKRLISGNLVGAPKLYATE 908 (917)
Q Consensus 840 ~V~si--s~dg~~Lasgs~DG~I~Iwdl~tg~~l~~l~---------~h~~~V~slafSpdg~~LaSgs~DG~V~IWdl~ 908 (917)
.+.++ ++++ .+++++.|+.|++||++++..+..+. +|...|++++|+|+|++|+||+.||.|+|||++
T Consensus 258 ~v~~~~~~~~~-~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~ 336 (340)
T 4aow_A 258 IINALCFSPNR-YWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVT 336 (340)
T ss_dssp CEEEEEECSSS-SEEEEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETTSCEEEEEEE
T ss_pred eEEeeecCCCC-ceeeccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCC
Confidence 67777 4444 46677789999999999888776653 688899999999999999999999999999997
Q ss_pred cc
Q psy3053 909 FY 910 (917)
Q Consensus 909 ~~ 910 (917)
+.
T Consensus 337 tG 338 (340)
T 4aow_A 337 IG 338 (340)
T ss_dssp C-
T ss_pred Cc
Confidence 54
No 40
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=5.3e-35 Score=326.81 Aligned_cols=318 Identities=14% Similarity=0.129 Sum_probs=259.7
Q ss_pred eeccCCcceEEEEEeCCCcEEEEEecCCceEEEeccCCc--eeeeeeccccceEEEEEeCCCCEEEEEecccEEEEEEec
Q psy3053 575 FCHSHKEAITAVAICGEGISVASVGRDAMLKIHSLKTGR--QERSAVLSSMTLSSLCILPDNCTMLVGCWDSCVVIYDVE 652 (917)
Q Consensus 575 ~l~~H~~~Vtsv~fSpdg~~Lasgs~Dg~I~IWd~~t~~--~~~~~~~~~~~V~sl~~spd~~~Lasgs~Dg~I~Iwdl~ 652 (917)
.+..|.++|++++|+|+|++|++++.||.|++||+.+++ .+..+..|...|.+++|+|+++++++|+.||.|++||+.
T Consensus 3 ~~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~ 82 (372)
T 1k8k_C 3 YHSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLK 82 (372)
T ss_dssp EEESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEE
T ss_pred eecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECC
Confidence 356699999999999999999999999999999999987 788888999999999999999999999999999999999
Q ss_pred cCeeeEE--eccCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEE
Q psy3053 653 CGRIVTE--LAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAV 730 (917)
Q Consensus 653 tg~~i~~--l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Las 730 (917)
+++.... +.+|...|.+++|+|++++|++|+.||.|++||+...... .........|...|.+++|+|+++.+++
T Consensus 83 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~---~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 159 (372)
T 1k8k_C 83 GRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDW---WVCKHIKKPIRSTVLSLDWHPNSVLLAA 159 (372)
T ss_dssp TTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTE---EEEEEECTTCCSCEEEEEECTTSSEEEE
T ss_pred CCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcc---eeeeeeecccCCCeeEEEEcCCCCEEEE
Confidence 9875444 4679999999999999999999999999999998765210 0011223567899999999999999999
Q ss_pred EECCCeEEEEEC------------------CCCeeeEEecCCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeEEE
Q psy3053 731 GTEAGELIIWSL------------------ENHLMTQQLSDDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVC 792 (917)
Q Consensus 731 gs~dG~I~iwDl------------------~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~tg~~i~ 792 (917)
|+.||.|++||+ ..++.+..+. .|...|.+++|+|++..|++++.||.|++||+++++.+.
T Consensus 160 ~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~ 238 (372)
T 1k8k_C 160 GSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESS-SSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVA 238 (372)
T ss_dssp EETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECC-CCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEE
T ss_pred EcCCCCEEEEEcccccccccccccccccccchhhheEecC-CCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCceeE
Confidence 999999999995 3667777777 788999999999999999999999999999999998887
Q ss_pred Eee-cCCceEEEEEeCCCEEEEEeCCCeEEEEECCC--CEE--EEEEecCCCceEEEeecCCEEEEEeCCCeEEEE---E
Q psy3053 793 NKV-FEEKLLCLSWAGEEKVILGGALGMVYLVDLIQ--VQL--LKQVRAHKDAVLSLHFDNCTMLVGCWDSCVVIY---D 864 (917)
Q Consensus 793 ~~~-~~~~i~~l~~s~~~~lv~gs~dG~I~vwdl~~--~~~--i~~l~~h~~~V~sis~dg~~Lasgs~DG~I~Iw---d 864 (917)
.+. +...+.+++|++++.+++++.+|.|++|++.+ ++. +..+..+... ..+....+.+| +
T Consensus 239 ~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~ 306 (372)
T 1k8k_C 239 TLASETLPLLAVTFITESSLVAAGHDCFPVLFTYDSAAGKLSFGGRLDVPKQS------------SQRGLTARERFQNLD 306 (372)
T ss_dssp EEECSSCCEEEEEEEETTEEEEEETTSSCEEEEEETTTTEEEECCCCCCC--------------------CHHHHHHHCC
T ss_pred EEccCCCCeEEEEEecCCCEEEEEeCCeEEEEEccCcCceEEEeeccCccccc------------hhhhcchhhhhhhcc
Confidence 765 45689999999998888888999999999987 542 2222211111 12223445566 4
Q ss_pred CcCCeEE------EEe-cCCCCCEEEEEEc-CCC---CEEEEEeCCCcEEEEecCc
Q psy3053 865 VECGRIV------TEL-AGHEDAISCVAWD-EKR---KRLISGNLVGAPKLYATEF 909 (917)
Q Consensus 865 l~tg~~l------~~l-~~h~~~V~slafS-pdg---~~LaSgs~DG~V~IWdl~~ 909 (917)
.. ++.. ..+ .+|.++|++++|+ ++| .+|+||+.||.|++|+++.
T Consensus 307 ~~-~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~ 361 (372)
T 1k8k_C 307 KK-ASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRS 361 (372)
T ss_dssp CC-C---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHH
T ss_pred cc-cccccCccccccccccccCCcceeEEecCCCcceeeEEEecCCCceEEEEecC
Confidence 32 3332 333 4899999999976 676 9999999999999999864
No 41
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.2e-35 Score=337.97 Aligned_cols=327 Identities=15% Similarity=0.161 Sum_probs=253.8
Q ss_pred cccCCccccceeee-ccCCcceEEEEEeC-CCcEEEEEecCCceEEEeccC---Cceee-eee-ccccceEEEEEeCCCC
Q psy3053 563 SWCDKSILEPLHFC-HSHKEAITAVAICG-EGISVASVGRDAMLKIHSLKT---GRQER-SAV-LSSMTLSSLCILPDNC 635 (917)
Q Consensus 563 ~w~~~~~l~~~~~l-~~H~~~Vtsv~fSp-dg~~Lasgs~Dg~I~IWd~~t---~~~~~-~~~-~~~~~V~sl~~spd~~ 635 (917)
.|+. ..+++..+ .+|.+.|++++|+| ++++|++|+.||+|++||+.+ +.... ... .|...|.+++|+|+++
T Consensus 47 ~w~~--~g~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~ 124 (437)
T 3gre_A 47 MGNL--RGKLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTYDCSSTVTQITMIPNFD 124 (437)
T ss_dssp GGGC--CCCEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEEECSSCEEEEEECTTSS
T ss_pred cccc--cceEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeeccCCCCEEEEEEeCCCC
Confidence 4663 23566777 89999999999999 999999999999999999977 44221 222 4889999999999999
Q ss_pred EEEEEecccEEEEEEec---cCeeeEEecc------------CCCceeEEE--ecCCCCEEEEEECCCeEEEEeCCCCCC
Q psy3053 636 TMLVGCWDSCVVIYDVE---CGRIVTELAG------------HEDAISCVA--WDEKRKRLISGSWDCTVRVWNTGASWS 698 (917)
Q Consensus 636 ~Lasgs~Dg~I~Iwdl~---tg~~i~~l~~------------H~~~Vt~l~--~spd~~~L~Sgs~DgtI~vWdl~~~~~ 698 (917)
.|++|+.||.|++||++ +++......+ +...+.++. +++++.+|++|+.||+|++||+.++
T Consensus 125 ~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~-- 202 (437)
T 3gre_A 125 AFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTL-- 202 (437)
T ss_dssp EEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTC--
T ss_pred EEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC--
Confidence 99999999999999995 5655444332 455666666 5578999999999999999999876
Q ss_pred CccCCcceeeecc--CCCceEEEEEeCCCCEEEEEECCCeEEEEECCCCeeeEEecCCCCCCeEEEEEec----CCCEEE
Q psy3053 699 HMKPSKSLVSQLD--LDNRIKCLAISKDNNQLAVGTEAGELIIWSLENHLMTQQLSDDINASVNGVLFSE----DGCRVL 772 (917)
Q Consensus 699 ~~~~~~~~~~~~~--h~~~V~~l~~spdg~~Lasgs~dG~I~iwDl~~~~~~~~l~~~h~~~V~~v~fsp----dg~~L~ 772 (917)
........ |...|++++|+|+++++++|+.||.|++||+++++.+..+...|...|.+++|+| ++.+++
T Consensus 203 -----~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~ 277 (437)
T 3gre_A 203 -----ERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVV 277 (437)
T ss_dssp -----CEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEE
T ss_pred -----eeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEE
Confidence 23333444 7889999999999999999999999999999999999888656778999996664 688999
Q ss_pred EEeCCCeEEEEECCCCeEEEEee---------------------------cCCceEEEEEeCCCEEEEEeCCCeEEEEEC
Q psy3053 773 SCGNNCMLNVYDLTTGMQVCNKV---------------------------FEEKLLCLSWAGEEKVILGGALGMVYLVDL 825 (917)
Q Consensus 773 s~s~Dg~I~iwDl~tg~~i~~~~---------------------------~~~~i~~l~~s~~~~lv~gs~dG~I~vwdl 825 (917)
+++.||.|++||+++++.+..+. +...+.+++++++..+++|+.||.|++||+
T Consensus 278 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~~~~~l~s~~~d~~i~~wd~ 357 (437)
T 3gre_A 278 GGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVSNDKILLTDEATSSIVMFSL 357 (437)
T ss_dssp EESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEETTEEEEEEGGGTEEEEEET
T ss_pred EEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEECCceEEEecCCCCeEEEEEC
Confidence 99999999999999998876655 334588899996667899999999999999
Q ss_pred CCCEEEEEEecCCCceEEE---ee--cCCEEEEEeCCCeEEEEECcCCeEEEEecCCCCCEEEEEEcCC--CCEEEEEeC
Q psy3053 826 IQVQLLKQVRAHKDAVLSL---HF--DNCTMLVGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEK--RKRLISGNL 898 (917)
Q Consensus 826 ~~~~~i~~l~~h~~~V~si---s~--dg~~Lasgs~DG~I~Iwdl~tg~~l~~l~~h~~~V~slafSpd--g~~LaSgs~ 898 (917)
.+++....+.+|......+ .. +..+++.. |+...+........|.+.|++++|+++ +.+|+||+.
T Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~~~ 429 (437)
T 3gre_A 358 NELSSSKAVISPSRFSDVFIPTQVTANLTMLLRK--------MKRTSTHSVDDSLYHHDIINSISTCEVDETPLLVACDN 429 (437)
T ss_dssp TCGGGCEEEECC--CCCEEEEEEEETTEEEEEEE--------CC-------------CCCEEEEEEEESSSSEEEEEEET
T ss_pred CCcccceEEecccccCceEEEEEeecceEEEEEe--------cccccccccCcccccccceeeEeeeccCCceEEEEEcC
Confidence 9999888888875443333 22 22222222 333344455666779999999999998 789999999
Q ss_pred CCcEEEEe
Q psy3053 899 VGAPKLYA 906 (917)
Q Consensus 899 DG~V~IWd 906 (917)
||.|+||+
T Consensus 430 dG~I~iw~ 437 (437)
T 3gre_A 430 SGLIGIFQ 437 (437)
T ss_dssp TSCEEEEC
T ss_pred CceEEEeC
Confidence 99999995
No 42
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.6e-34 Score=308.65 Aligned_cols=284 Identities=14% Similarity=0.165 Sum_probs=253.7
Q ss_pred ceeeeeeccccceEEEEEeCCCCEEEEEecccEEEEEEeccCeeeEEeccCCCceeEEEecCCCCEEEEEECCCeEEEEe
Q psy3053 613 RQERSAVLSSMTLSSLCILPDNCTMLVGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWN 692 (917)
Q Consensus 613 ~~~~~~~~~~~~V~sl~~spd~~~Lasgs~Dg~I~Iwdl~tg~~i~~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWd 692 (917)
+..+.+.+|...|.+++| ++++++++|+.||.|++||+.+++....+..|...|.+++|+|++++|++|+.||.|++|+
T Consensus 9 ~~~~~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~ 87 (313)
T 3odt_A 9 QLSATLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVP 87 (313)
T ss_dssp EEEEEECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEEE
T ss_pred HHHHHhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEEEE
Confidence 566778899999999999 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEEEECCCeEEEEECCCCeeeEEecCCCCCCeEEEEEec-CCCEE
Q psy3053 693 TGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGELIIWSLENHLMTQQLSDDINASVNGVLFSE-DGCRV 771 (917)
Q Consensus 693 l~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~dG~I~iwDl~~~~~~~~l~~~h~~~V~~v~fsp-dg~~L 771 (917)
+.... ..........|...|.+++| +++.+++|+.||.|++|| .++....+. .|...+.+++|+| ++..+
T Consensus 88 ~~~~~----~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d--~~~~~~~~~-~~~~~v~~~~~~~~~~~~l 158 (313)
T 3odt_A 88 LFATS----GEDPLYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWK--EGSLVYNLQ-AHNASVWDAKVVSFSENKF 158 (313)
T ss_dssp TTCCT----TSCC-CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEE--TTEEEEEEE-CCSSCEEEEEEEETTTTEE
T ss_pred eeecC----CCCcccchhhcccCEEEEEe--cCCEEEEEeCCCCEEEEc--CCcEEEecc-cCCCceeEEEEccCCCCEE
Confidence 87652 11234445678999999999 578999999999999999 666777776 7899999999998 99999
Q ss_pred EEEeCCCeEEEEECCCCeEEEEee--cCCceEEEEEeCCCEEEEEeCCCeEEEEECCCCEEEEEEecCCCceEEEee--c
Q psy3053 772 LSCGNNCMLNVYDLTTGMQVCNKV--FEEKLLCLSWAGEEKVILGGALGMVYLVDLIQVQLLKQVRAHKDAVLSLHF--D 847 (917)
Q Consensus 772 ~s~s~Dg~I~iwDl~tg~~i~~~~--~~~~i~~l~~s~~~~lv~gs~dG~I~vwdl~~~~~i~~l~~h~~~V~sis~--d 847 (917)
++++.||.|++||. +....... +...+.++++++++.+++++.+|.|++||+.+++.+..+.+|...|.++.+ +
T Consensus 159 ~~~~~d~~i~i~d~--~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~ 236 (313)
T 3odt_A 159 LTASADKTIKLWQN--DKVIKTFSGIHNDVVRHLAVVDDGHFISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLPN 236 (313)
T ss_dssp EEEETTSCEEEEET--TEEEEEECSSCSSCEEEEEEEETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTT
T ss_pred EEEECCCCEEEEec--CceEEEEeccCcccEEEEEEcCCCeEEEccCCCeEEEEECCchhhhhhhhcCCceEEEEEEecC
Confidence 99999999999994 44444433 678899999999989999999999999999999999999999999999954 6
Q ss_pred CCEEEEEeCCCeEEEEECcCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcc
Q psy3053 848 NCTMLVGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGNLVGAPKLYATEFY 910 (917)
Q Consensus 848 g~~Lasgs~DG~I~Iwdl~tg~~l~~l~~h~~~V~slafSpdg~~LaSgs~DG~V~IWdl~~~ 910 (917)
+ .+++|+.||.|++||+.+++.+..+..|...|.+++|+|+++ +++++.||.|++|+++..
T Consensus 237 ~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~iw~~~~~ 297 (313)
T 3odt_A 237 G-DIVSCGEDRTVRIWSKENGSLKQVITLPAISIWSVDCMSNGD-IIVGSSDNLVRIFSQEKS 297 (313)
T ss_dssp S-CEEEEETTSEEEEECTTTCCEEEEEECSSSCEEEEEECTTSC-EEEEETTSCEEEEESCGG
T ss_pred C-CEEEEecCCEEEEEECCCCceeEEEeccCceEEEEEEccCCC-EEEEeCCCcEEEEeCCCC
Confidence 6 689999999999999999999999999999999999999998 667999999999999854
No 43
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=1.5e-35 Score=329.71 Aligned_cols=312 Identities=12% Similarity=0.122 Sum_probs=239.5
Q ss_pred eeccCCcceEEEEEeCC----CcEEEEEecCCceEEEeccCCceeeeeec-----cccceEEEEEeCC----CCEEEEEe
Q psy3053 575 FCHSHKEAITAVAICGE----GISVASVGRDAMLKIHSLKTGRQERSAVL-----SSMTLSSLCILPD----NCTMLVGC 641 (917)
Q Consensus 575 ~l~~H~~~Vtsv~fSpd----g~~Lasgs~Dg~I~IWd~~t~~~~~~~~~-----~~~~V~sl~~spd----~~~Lasgs 641 (917)
...+|.++|++++|+|+ ...+++++.++.|++|++.+++.+..+.. +...|.+++|+|+ +.+|++|+
T Consensus 13 ~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~ 92 (366)
T 3k26_A 13 LKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAG 92 (366)
T ss_dssp EECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEE
T ss_pred eecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEec
Confidence 44689999999999984 45677777788999999998887776664 4467999999999 67999999
Q ss_pred cccEEEEEEeccCeeeEEeccCCCceeEEEecC-CCCEEEEEECCCeEEEEeCCCCCCCccCCcceeee---ccCCCceE
Q psy3053 642 WDSCVVIYDVECGRIVTELAGHEDAISCVAWDE-KRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQ---LDLDNRIK 717 (917)
Q Consensus 642 ~Dg~I~Iwdl~tg~~i~~l~~H~~~Vt~l~~sp-d~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~---~~h~~~V~ 717 (917)
.||.|++||+.+++.+..+.+|...|++++|+| ++++|++|+.||+|++||+.++ ...... ..|...|.
T Consensus 93 ~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~-------~~~~~~~~~~~~~~~v~ 165 (366)
T 3k26_A 93 SRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTD-------TLVAIFGGVEGHRDEVL 165 (366)
T ss_dssp TTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTT-------EEEEEECSTTSCSSCEE
T ss_pred CCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecC-------eEEEEecccccccCcee
Confidence 999999999999999999999999999999999 8999999999999999999876 222222 57899999
Q ss_pred EEEEeCCCCEEEEEECCCeEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeEEEEeecC
Q psy3053 718 CLAISKDNNQLAVGTEAGELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCNKVFE 797 (917)
Q Consensus 718 ~l~~spdg~~Lasgs~dG~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~tg~~i~~~~~~ 797 (917)
+++|+|+++.+++|+.||.|++||+++++....+.. .+.++|++..+........ .........+.
T Consensus 166 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~ 231 (366)
T 3k26_A 166 SADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKE-------SYDYNPNKTNRPFISQKIH-------FPDFSTRDIHR 231 (366)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHH-------HHTCCGGGCSSCCCCEEEC-------CCSEEECSSCS
T ss_pred EEEECCCCCEEEEecCCCCEEEEECCCCccccccce-------eEEecCCCCcccccceeec-------cCccccccCCc
Confidence 999999999999999999999999998765544331 1122232222211110000 00000111134
Q ss_pred CceEEEEEeCCCEEEEEeCCCeEEEEECCCC--------------EEEEEEecCCCceEEE--eec--CCEEEEEeCCCe
Q psy3053 798 EKLLCLSWAGEEKVILGGALGMVYLVDLIQV--------------QLLKQVRAHKDAVLSL--HFD--NCTMLVGCWDSC 859 (917)
Q Consensus 798 ~~i~~l~~s~~~~lv~gs~dG~I~vwdl~~~--------------~~i~~l~~h~~~V~si--s~d--g~~Lasgs~DG~ 859 (917)
..+.+++|+++ .+++++.+|.|++||+.++ ..+..+.+|...|.++ +++ +++|++|+.||.
T Consensus 232 ~~v~~~~~~~~-~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~ 310 (366)
T 3k26_A 232 NYVDCVRWLGD-LILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGK 310 (366)
T ss_dssp SCCCEEEEETT-EEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSC
T ss_pred ceEEEEEEcCC-EEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCc
Confidence 44555555522 5555555555555555443 3467788898888887 778 999999999999
Q ss_pred EEEEECcCCe----EEEEecCC--CCCEEEEEEcCCCCEEEEEeCCCcEEEEecC
Q psy3053 860 VVIYDVECGR----IVTELAGH--EDAISCVAWDEKRKRLISGNLVGAPKLYATE 908 (917)
Q Consensus 860 I~Iwdl~tg~----~l~~l~~h--~~~V~slafSpdg~~LaSgs~DG~V~IWdl~ 908 (917)
|++||+.+++ ....+.+| ...|++++|+|++++|++|+.||.|++||+.
T Consensus 311 i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~ 365 (366)
T 3k26_A 311 LYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRL 365 (366)
T ss_dssp EEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred EEEEECCCCCCccccceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEec
Confidence 9999999875 55577777 7999999999999999999999999999985
No 44
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7e-34 Score=309.37 Aligned_cols=292 Identities=19% Similarity=0.266 Sum_probs=259.1
Q ss_pred CccccceeeeccCCcceEEEEEeCCCcEEEEEecCCceEEEeccCCceeeeeeccccceEEEEEeCCCCEEEEEecccEE
Q psy3053 567 KSILEPLHFCHSHKEAITAVAICGEGISVASVGRDAMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTMLVGCWDSCV 646 (917)
Q Consensus 567 ~~~l~~~~~l~~H~~~Vtsv~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~~~~~~~~V~sl~~spd~~~Lasgs~Dg~I 646 (917)
....++...+.+|.+.|++++| +++++|++|+.||.|++||+.+++....+..|...|.+++|+|+++.+++|+.||.|
T Consensus 5 ~~~~~~~~~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i 83 (313)
T 3odt_A 5 FTGYQLSATLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMI 83 (313)
T ss_dssp CCCCEEEEEECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEETTSCE
T ss_pred cccHHHHHHhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecCCCeE
Confidence 4456778899999999999999 999999999999999999999999899999999999999999999999999999999
Q ss_pred EEEEeccC---eeeEEeccCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeC
Q psy3053 647 VIYDVECG---RIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISK 723 (917)
Q Consensus 647 ~Iwdl~tg---~~i~~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp 723 (917)
++|++... +....+.+|...|.+++| +++.+++++.||.|++||. . ........|...+.+++++|
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d~--~-------~~~~~~~~~~~~v~~~~~~~ 152 (313)
T 3odt_A 84 NGVPLFATSGEDPLYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWKE--G-------SLVYNLQAHNASVWDAKVVS 152 (313)
T ss_dssp EEEETTCCTTSCC-CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEET--T-------EEEEEEECCSSCEEEEEEEE
T ss_pred EEEEeeecCCCCcccchhhcccCEEEEEe--cCCEEEEEeCCCCEEEEcC--C-------cEEEecccCCCceeEEEEcc
Confidence 99998754 567788899999999999 5689999999999999992 2 24445667899999999998
Q ss_pred -CCCEEEEEECCCeEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeEEEEee-cCCceE
Q psy3053 724 -DNNQLAVGTEAGELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCNKV-FEEKLL 801 (917)
Q Consensus 724 -dg~~Lasgs~dG~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~tg~~i~~~~-~~~~i~ 801 (917)
+++.+++++.||.|++|| .++....+...+...+.+++|+|++. +++++.||.|++||+++++.+.... +...+.
T Consensus 153 ~~~~~l~~~~~d~~i~i~d--~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~ 229 (313)
T 3odt_A 153 FSENKFLTASADKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYEGHESFVY 229 (313)
T ss_dssp TTTTEEEEEETTSCEEEEE--TTEEEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEEECCSSCEE
T ss_pred CCCCEEEEEECCCCEEEEe--cCceEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhhhcCCceEE
Confidence 899999999999999999 45666777755899999999999998 9999999999999999998887765 678899
Q ss_pred EEEEeCCCEEEEEeCCCeEEEEECCCCEEEEEEecCCCceEEE--eecCCEEEEEeCCCeEEEEECcCCeEEEEe
Q psy3053 802 CLSWAGEEKVILGGALGMVYLVDLIQVQLLKQVRAHKDAVLSL--HFDNCTMLVGCWDSCVVIYDVECGRIVTEL 874 (917)
Q Consensus 802 ~l~~s~~~~lv~gs~dG~I~vwdl~~~~~i~~l~~h~~~V~si--s~dg~~Lasgs~DG~I~Iwdl~tg~~l~~l 874 (917)
++++++++.+++++.||.|++||+.+++.+..+..|...|.++ +++++ +++++.||.|++||+.+++.....
T Consensus 230 ~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~iw~~~~~~~~~~~ 303 (313)
T 3odt_A 230 CIKLLPNGDIVSCGEDRTVRIWSKENGSLKQVITLPAISIWSVDCMSNGD-IIVGSSDNLVRIFSQEKSRWASED 303 (313)
T ss_dssp EEEECTTSCEEEEETTSEEEEECTTTCCEEEEEECSSSCEEEEEECTTSC-EEEEETTSCEEEEESCGGGCCC--
T ss_pred EEEEecCCCEEEEecCCEEEEEECCCCceeEEEeccCceEEEEEEccCCC-EEEEeCCCcEEEEeCCCCceeehh
Confidence 9999999899999999999999999999999999999999998 45777 667999999999999987765443
No 45
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=4.4e-34 Score=313.40 Aligned_cols=256 Identities=18% Similarity=0.232 Sum_probs=222.4
Q ss_pred ceeeeeeccccceEEEEEeCCCCEEEEEecccEEEEEEeccCeeeEEeccCCCceeEEEecCCCCEEEEEECCCeEEEEe
Q psy3053 613 RQERSAVLSSMTLSSLCILPDNCTMLVGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWN 692 (917)
Q Consensus 613 ~~~~~~~~~~~~V~sl~~spd~~~Lasgs~Dg~I~Iwdl~tg~~i~~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWd 692 (917)
+..+++.+|...|.+++|+|++++|++|+.||+|++||+.+++.+..+.+|..+|.+++|+|++++|++|+.|++|++||
T Consensus 4 ~~~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd 83 (304)
T 2ynn_A 4 DIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFN 83 (304)
T ss_dssp CCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEE
T ss_pred eeEEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEE
Confidence 34567888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEEEECCCeEEEEECCCCeee-EEecCCCCCCeEEEEEec-CCCE
Q psy3053 693 TGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGELIIWSLENHLMT-QQLSDDINASVNGVLFSE-DGCR 770 (917)
Q Consensus 693 l~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~dG~I~iwDl~~~~~~-~~l~~~h~~~V~~v~fsp-dg~~ 770 (917)
+.++ .......+|...|.+++|+|+++++++|+.||+|++||++++... ..+. +|...|.+++|+| ++..
T Consensus 84 ~~~~-------~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~-~h~~~v~~v~~~p~~~~~ 155 (304)
T 2ynn_A 84 YNTG-------EKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFE-GHEHFVMCVAFNPKDPST 155 (304)
T ss_dssp TTTC-------CEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEEC-CCCSCEEEEEECTTCTTE
T ss_pred CCCC-------cEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhc-ccCCcEEEEEECCCCCCE
Confidence 9876 345556789999999999999999999999999999999987444 4454 8999999999999 6789
Q ss_pred EEEEeCCCeEEEEECCCCeEEEEeecCCceEEEEEeCCCEEEEEeCCCeEEEEECCCCEEEEEEecCCCceEEE--e--e
Q psy3053 771 VLSCGNNCMLNVYDLTTGMQVCNKVFEEKLLCLSWAGEEKVILGGALGMVYLVDLIQVQLLKQVRAHKDAVLSL--H--F 846 (917)
Q Consensus 771 L~s~s~Dg~I~iwDl~tg~~i~~~~~~~~i~~l~~s~~~~lv~gs~dG~I~vwdl~~~~~i~~l~~h~~~V~si--s--~ 846 (917)
+++|+.|++|++||+.++...... ..+|...+..+ + +
T Consensus 156 l~sgs~D~~v~iwd~~~~~~~~~~---------------------------------------~~~~~~~v~~~~~~~~~ 196 (304)
T 2ynn_A 156 FASGCLDRTVKVWSLGQSTPNFTL---------------------------------------TTGQERGVNYVDYYPLP 196 (304)
T ss_dssp EEEEETTSEEEEEETTCSSCSEEE---------------------------------------ECCCTTCEEEEEECCST
T ss_pred EEEEeCCCeEEEEECCCCCcccee---------------------------------------ccCCcCcEEEEEEEEcC
Confidence 999999999999998765322111 11233444444 2 3
Q ss_pred cCCEEEEEeCCCeEEEEECcCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcc-eEEEE
Q psy3053 847 DNCTMLVGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGNLVGAPKLYATEFY-LLYVL 915 (917)
Q Consensus 847 dg~~Lasgs~DG~I~Iwdl~tg~~l~~l~~h~~~V~slafSpdg~~LaSgs~DG~V~IWdl~~~-ll~~L 915 (917)
++.+|++|+.||+|++||+++++++..+.+|...|.+++|+|++.+|++|+.||+|++||++.. .+..+
T Consensus 197 ~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~ 266 (304)
T 2ynn_A 197 DKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTL 266 (304)
T ss_dssp TCCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEE
T ss_pred CCCEEEEEcCCCeEEEEeCCCCccceeeCCCCCCEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeec
Confidence 6789999999999999999999999999999999999999999999999999999999999854 44444
No 46
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.5e-34 Score=361.28 Aligned_cols=342 Identities=13% Similarity=0.086 Sum_probs=259.7
Q ss_pred ccccCCccccceeeeccCCcceEEEEEeCCCcEEEEEecCCceEEEeccCCcee-----------eeeeccccceEEEEE
Q psy3053 562 NSWCDKSILEPLHFCHSHKEAITAVAICGEGISVASVGRDAMLKIHSLKTGRQE-----------RSAVLSSMTLSSLCI 630 (917)
Q Consensus 562 ~~w~~~~~l~~~~~l~~H~~~Vtsv~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~-----------~~~~~~~~~V~sl~~ 630 (917)
.+|+..+. +++..+. |.+.|++++|+|+++++++|+.||+|++||+.+++.. .....|..+|.+++|
T Consensus 82 ~lWd~~~~-~~~~~~~-~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~ 159 (902)
T 2oaj_A 82 YVLSLYSQ-KVLTTVF-VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQW 159 (902)
T ss_dssp EEEETTTC-SEEEEEE-CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEE
T ss_pred EEEECCCC-cEEEEEc-CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEE
Confidence 68886543 4555664 7789999999999999999999999999999987653 234568889999999
Q ss_pred eCC-CCEEEEEecccEEEEEEeccCeeeEEeccC------------------CCceeEEEecCCCCEEEEEECCCeEEEE
Q psy3053 631 LPD-NCTMLVGCWDSCVVIYDVECGRIVTELAGH------------------EDAISCVAWDEKRKRLISGSWDCTVRVW 691 (917)
Q Consensus 631 spd-~~~Lasgs~Dg~I~Iwdl~tg~~i~~l~~H------------------~~~Vt~l~~spd~~~L~Sgs~DgtI~vW 691 (917)
+|+ +..+++|+.||.| +||+.+++.+..+.+| ...|++++|+|+|++|++|+.||+|++|
T Consensus 160 sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lW 238 (902)
T 2oaj_A 160 NPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFW 238 (902)
T ss_dssp ETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEE
T ss_pred ccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEE
Confidence 996 5789999999999 9999999988888766 5789999999999999999999999999
Q ss_pred eCCCCCCCcc-CC-----cce-----eeeccCCCceEEEEEeC----C--------------------------------
Q psy3053 692 NTGASWSHMK-PS-----KSL-----VSQLDLDNRIKCLAISK----D-------------------------------- 724 (917)
Q Consensus 692 dl~~~~~~~~-~~-----~~~-----~~~~~h~~~V~~l~~sp----d-------------------------------- 724 (917)
|+.++..... .. ... .....+...|.+++|++ +
T Consensus 239 d~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~ 318 (902)
T 2oaj_A 239 DANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSI 318 (902)
T ss_dssp ETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGG
T ss_pred ECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCccc
Confidence 9977531100 00 000 00001122344444422 1
Q ss_pred ---------------------------------------------CCEEEEEECCCeEEEEECCCCeeeEE-------ec
Q psy3053 725 ---------------------------------------------NNQLAVGTEAGELIIWSLENHLMTQQ-------LS 752 (917)
Q Consensus 725 ---------------------------------------------g~~Lasgs~dG~I~iwDl~~~~~~~~-------l~ 752 (917)
...+++++.||.|++||+.++..... +.
T Consensus 319 ~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~ 398 (902)
T 2oaj_A 319 TSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLS 398 (902)
T ss_dssp CCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGT
T ss_pred cchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCccc
Confidence 12445555566677777655532221 01
Q ss_pred ---------------------------------CCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeEE----EEe-
Q psy3053 753 ---------------------------------DDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQV----CNK- 794 (917)
Q Consensus 753 ---------------------------------~~h~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~tg~~i----~~~- 794 (917)
.+|...+.+++|+|+++.|++|+.|++|++||+.++... ...
T Consensus 399 ~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~ 478 (902)
T 2oaj_A 399 WLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDNASFEVN 478 (902)
T ss_dssp TBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTTTBCEEEE
T ss_pred ccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEEecCCCcEEEEECCCccccCCceEEee
Confidence 012223344556788999999999999999999877421 111
Q ss_pred -------ecCCceEEEEEeCCC-EEEEEeCCCeEEEEECCCC--------------------------------------
Q psy3053 795 -------VFEEKLLCLSWAGEE-KVILGGALGMVYLVDLIQV-------------------------------------- 828 (917)
Q Consensus 795 -------~~~~~i~~l~~s~~~-~lv~gs~dG~I~vwdl~~~-------------------------------------- 828 (917)
.+...|.+++|+|++ .+++|+.||+|++||+.++
T Consensus 479 l~~~~~~~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 558 (902)
T 2oaj_A 479 LSRTLNKAKELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAP 558 (902)
T ss_dssp HHHHTTCSSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCC
T ss_pred chhhcCCCCCCceeEEEecCCCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCC
Confidence 456789999999875 5788999999999999765
Q ss_pred -------EEEEEEecCCCceEEE--eecCCEEEEEeCCCeEEEEECcCCeEEE--E---ec-CCCCCEEEEEEc-----C
Q psy3053 829 -------QLLKQVRAHKDAVLSL--HFDNCTMLVGCWDSCVVIYDVECGRIVT--E---LA-GHEDAISCVAWD-----E 888 (917)
Q Consensus 829 -------~~i~~l~~h~~~V~si--s~dg~~Lasgs~DG~I~Iwdl~tg~~l~--~---l~-~h~~~V~slafS-----p 888 (917)
+++..+.+|.+.|+++ +||| +||+|+.||+|++||++++..+. . +. +|.+.|++++|+ |
T Consensus 559 ~~~~~g~~~~~~l~~h~~~V~svafSpdG-~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~ 637 (902)
T 2oaj_A 559 TGVRQGFMPSTAVHANKGKTSAINNSNIG-FVGIAYAAGSLMLIDRRGPAIIYMENIREISGAQSACVTCIEFVIMEYGD 637 (902)
T ss_dssp TTCSEEEEEEEEECCCSCSEEEEEECBTS-EEEEEETTSEEEEEETTTTEEEEEEEGGGTCSSCCCCEEEEEEEEEECTT
T ss_pred CCCCCccceeEEEEcCCCcEEEEEecCCc-EEEEEeCCCcEEEEECCCCeEEEEeehhHhccccccceEEEEEEEEecCC
Confidence 3467788999999999 7799 99999999999999999887764 2 32 899999999999 8
Q ss_pred CC---CEEEEEeCCCcEEEEec
Q psy3053 889 KR---KRLISGNLVGAPKLYAT 907 (917)
Q Consensus 889 dg---~~LaSgs~DG~V~IWdl 907 (917)
|| ++|++|+.||+|++|++
T Consensus 638 Dg~~~~~l~sgs~D~tv~~wd~ 659 (902)
T 2oaj_A 638 DGYSSILMVCGTDMGEVITYKI 659 (902)
T ss_dssp SSSEEEEEEEEETTSEEEEEEE
T ss_pred CCCcceEEEEEecCCcEEEEEE
Confidence 85 89999999999999998
No 47
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=2.7e-33 Score=307.74 Aligned_cols=292 Identities=19% Similarity=0.210 Sum_probs=253.8
Q ss_pred cccCCccccceeeeccCCcceEEEEEeCCCcEEEEEecCCceEEEeccCCceeeeee-----ccccceEEEEEeCCCCEE
Q psy3053 563 SWCDKSILEPLHFCHSHKEAITAVAICGEGISVASVGRDAMLKIHSLKTGRQERSAV-----LSSMTLSSLCILPDNCTM 637 (917)
Q Consensus 563 ~w~~~~~l~~~~~l~~H~~~Vtsv~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~~~-----~~~~~V~sl~~spd~~~L 637 (917)
.|.......+.. ..+|.+.|++++|+|+++++++++ ||.|++|++.++.....+. .|...|.+++|+|+++.+
T Consensus 35 ~~~~~~~~~~~~-~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 112 (337)
T 1gxr_A 35 GPGIPRHARQIN-TLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTL 112 (337)
T ss_dssp STTCCSEEEEEE-EECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEE
T ss_pred ccccCCccccce-eccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEE
Confidence 344333333333 347999999999999999999999 9999999998876443332 678899999999999999
Q ss_pred EEEecccEEEEEEeccCe--eeEEeccCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCc
Q psy3053 638 LVGCWDSCVVIYDVECGR--IVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNR 715 (917)
Q Consensus 638 asgs~Dg~I~Iwdl~tg~--~i~~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~ 715 (917)
++|+.||.|++||+.+++ ....+.+|...|++++|+|+++++++++.||.|++||+.++ ........|...
T Consensus 113 ~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~-------~~~~~~~~~~~~ 185 (337)
T 1gxr_A 113 IVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQ-------TLVRQFQGHTDG 185 (337)
T ss_dssp EEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT-------EEEEEECCCSSC
T ss_pred EEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCC-------ceeeeeecccCc
Confidence 999999999999999887 66778889999999999999999999999999999999875 234445668899
Q ss_pred eEEEEEeCCCCEEEEEECCCeEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeEEEEee
Q psy3053 716 IKCLAISKDNNQLAVGTEAGELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCNKV 795 (917)
Q Consensus 716 V~~l~~spdg~~Lasgs~dG~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~tg~~i~~~~ 795 (917)
+.+++|+|+++.+++++.||.|++||+++++.+..+. +...+.+++|+|+++.+++++.++.|++||+.+++......
T Consensus 186 i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~ 263 (337)
T 1gxr_A 186 ASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHD--FTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHL 263 (337)
T ss_dssp EEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE--CSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEEECC
T ss_pred eEEEEECCCCCEEEEEecCCcEEEEECCCCceEeeec--CCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeEEEcC
Confidence 9999999999999999999999999999999888775 67889999999999999999999999999999998877777
Q ss_pred cCCceEEEEEeCCC-EEEEEeCCCeEEEEECCCCEEEEEEecCCCceEEE--eecCCEEEEEeCCCeEEEEECc
Q psy3053 796 FEEKLLCLSWAGEE-KVILGGALGMVYLVDLIQVQLLKQVRAHKDAVLSL--HFDNCTMLVGCWDSCVVIYDVE 866 (917)
Q Consensus 796 ~~~~i~~l~~s~~~-~lv~gs~dG~I~vwdl~~~~~i~~l~~h~~~V~si--s~dg~~Lasgs~DG~I~Iwdl~ 866 (917)
+...+.+++|++++ .+++++.+|.|++||+.+++.+.. ..|...+.++ ++++++|++++.||.|++|++.
T Consensus 264 ~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~ 336 (337)
T 1gxr_A 264 HESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQ-SKESSSVLSCDISVDDKYIVTGSGDKKATVYEVI 336 (337)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEE-EECSSCEEEEEECTTSCEEEEEETTSCEEEEEEE
T ss_pred CccceeEEEECCCCCEEEEecCCCcEEEEECCCCeEEEE-ecCCCcEEEEEECCCCCEEEEecCCCeEEEEEEe
Confidence 88899999999865 588899999999999999988754 3578888888 5689999999999999999963
No 48
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=2.9e-34 Score=324.00 Aligned_cols=292 Identities=17% Similarity=0.191 Sum_probs=246.2
Q ss_pred eccCCceeeeeeccccceEEEEEeCCC-CEEEEEecccEEEEEEeccCeeeEEec--cCCCceeEEEecC-CCCEEEEEE
Q psy3053 608 SLKTGRQERSAVLSSMTLSSLCILPDN-CTMLVGCWDSCVVIYDVECGRIVTELA--GHEDAISCVAWDE-KRKRLISGS 683 (917)
Q Consensus 608 d~~t~~~~~~~~~~~~~V~sl~~spd~-~~Lasgs~Dg~I~Iwdl~tg~~i~~l~--~H~~~Vt~l~~sp-d~~~L~Sgs 683 (917)
++.+.+....+..|...|.+++|+|++ ++|++|+.||.|++||+.+++....+. +|.+.|.+++|+| ++++|++++
T Consensus 59 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~ 138 (383)
T 3ei3_B 59 SLKSYKLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSS 138 (383)
T ss_dssp HHTTCEEEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEE
T ss_pred cccccceEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEe
Confidence 334455566677899999999999999 999999999999999999888777665 6999999999999 789999999
Q ss_pred CCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEEEECCCeEEEEECCCCeeeEEecCCCCCCeEEEE
Q psy3053 684 WDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGELIIWSLENHLMTQQLSDDINASVNGVL 763 (917)
Q Consensus 684 ~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~dG~I~iwDl~~~~~~~~l~~~h~~~V~~v~ 763 (917)
.|++|++||+.+. ..........+...|.+++|+|+++.+++|+.||.|++||+ +++.+..+. .|...|.+++
T Consensus 139 ~d~~i~iwd~~~~-----~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~-~h~~~v~~~~ 211 (383)
T 3ei3_B 139 IRGATTLRDFSGS-----VIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGL-DGHEIFKEK-LHKAKVTHAE 211 (383)
T ss_dssp TTTEEEEEETTSC-----EEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEET-TSCEEEEEE-CSSSCEEEEE
T ss_pred CCCEEEEEECCCC-----ceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEEC-CCCEEEEec-cCCCcEEEEE
Confidence 9999999999753 11112222345588999999999999999999999999999 566777777 7899999999
Q ss_pred EecCCC-EEEEEeCCCeEEEEECCC----CeEEEEeecCCceEEEEEeC-CC-EEEEEeCCCeEEEEECCCCEEEEEEec
Q psy3053 764 FSEDGC-RVLSCGNNCMLNVYDLTT----GMQVCNKVFEEKLLCLSWAG-EE-KVILGGALGMVYLVDLIQVQLLKQVRA 836 (917)
Q Consensus 764 fspdg~-~L~s~s~Dg~I~iwDl~t----g~~i~~~~~~~~i~~l~~s~-~~-~lv~gs~dG~I~vwdl~~~~~i~~l~~ 836 (917)
|+|+++ .+++++.|+.|++||+++ +..+....+...+.+++|++ ++ .+++++.||.|++||+.+++....+.+
T Consensus 212 ~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~ 291 (383)
T 3ei3_B 212 FNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIII 291 (383)
T ss_dssp ECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEEECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEE
T ss_pred ECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEecCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCcccccccc
Confidence 999999 999999999999999987 67777788899999999998 65 678899999999999998877666665
Q ss_pred CC-------C----------ceEEE--eecCCEEEEEeCCCeEEEEECcCCeEEEEecC--CCCCEEEEEEcCCCCEEEE
Q psy3053 837 HK-------D----------AVLSL--HFDNCTMLVGCWDSCVVIYDVECGRIVTELAG--HEDAISCVAWDEKRKRLIS 895 (917)
Q Consensus 837 h~-------~----------~V~si--s~dg~~Lasgs~DG~I~Iwdl~tg~~l~~l~~--h~~~V~slafSpdg~~LaS 895 (917)
|. . .+.++ ++++++ +|+.||.|++||+.+++.+..+.+ |.+.+..++|+|++++|++
T Consensus 292 ~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~~g~~l~s 369 (383)
T 3ei3_B 292 HPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSPTGDVLAS 369 (383)
T ss_dssp CCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEECTTSSEEEE
T ss_pred ccccccccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCceeeeecCCCCCceEEEEEEecCccEEEE
Confidence 43 1 22222 456665 777899999999999999999987 4577888899999999999
Q ss_pred EeCCCcEEEEecCc
Q psy3053 896 GNLVGAPKLYATEF 909 (917)
Q Consensus 896 gs~DG~V~IWdl~~ 909 (917)
|+ ||.|++|+++.
T Consensus 370 ~s-d~~i~iw~~~~ 382 (383)
T 3ei3_B 370 GM-GFNILIWNRED 382 (383)
T ss_dssp EE-TTEEEEEECC-
T ss_pred ec-CCcEEEEecCC
Confidence 97 99999999975
No 49
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=1.5e-33 Score=318.49 Aligned_cols=328 Identities=12% Similarity=0.157 Sum_probs=246.3
Q ss_pred cceeeeccCCcceEEEEEeC-CCcEEEEEecCCceEEEeccCCceeeeee-------------ccccceEEEEEeC-CCC
Q psy3053 571 EPLHFCHSHKEAITAVAICG-EGISVASVGRDAMLKIHSLKTGRQERSAV-------------LSSMTLSSLCILP-DNC 635 (917)
Q Consensus 571 ~~~~~l~~H~~~Vtsv~fSp-dg~~Lasgs~Dg~I~IWd~~t~~~~~~~~-------------~~~~~V~sl~~sp-d~~ 635 (917)
+....+.+|.+.|++++|+| ++++|++|+.||.|++|++.++....... .|...|.+++|+| ++.
T Consensus 34 ~~~~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 113 (408)
T 4a11_B 34 KDRDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTG 113 (408)
T ss_dssp TTEEECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTT
T ss_pred cceeeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCc
Confidence 45677889999999999999 99999999999999999999887665543 4888999999999 778
Q ss_pred EEEEEecccEEEEEEeccCeeeEEeccCCCceeEEEecCC---CCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccC
Q psy3053 636 TMLVGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEK---RKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDL 712 (917)
Q Consensus 636 ~Lasgs~Dg~I~Iwdl~tg~~i~~l~~H~~~Vt~l~~spd---~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h 712 (917)
++++|+.||.|++||+.+++....+. +...+.++++++. +.++++|+.||.|++||+.++ ........|
T Consensus 114 ~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~-------~~~~~~~~~ 185 (408)
T 4a11_B 114 MFTSSSFDKTLKVWDTNTLQTADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSG-------SCSHILQGH 185 (408)
T ss_dssp CEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSS-------CCCEEECCC
T ss_pred EEEEEeCCCeEEEeeCCCCccceecc-CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCc-------ceeeeecCC
Confidence 99999999999999999999888776 7888999999884 459999999999999999765 234445678
Q ss_pred CCceEEEEEeCCCC-EEEEEECCCeEEEEECCCCe-eeEEec--------------CCCCCCeEEEEEecCCCEEEEEeC
Q psy3053 713 DNRIKCLAISKDNN-QLAVGTEAGELIIWSLENHL-MTQQLS--------------DDINASVNGVLFSEDGCRVLSCGN 776 (917)
Q Consensus 713 ~~~V~~l~~spdg~-~Lasgs~dG~I~iwDl~~~~-~~~~l~--------------~~h~~~V~~v~fspdg~~L~s~s~ 776 (917)
...|.+++|+|+++ ++++|+.||.|++||++++. ....+. ..|...|.+++|+|+++++++++.
T Consensus 186 ~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 265 (408)
T 4a11_B 186 RQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGT 265 (408)
T ss_dssp CSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEET
T ss_pred CCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecC
Confidence 99999999999998 58999999999999998765 333331 267889999999999999999999
Q ss_pred CCeEEEEECCCCeEEEEeec-------CCceEEEEEeCCCEEEEEeCCCeEEEEECCCCEEEEEEecCCCceEEE--eec
Q psy3053 777 NCMLNVYDLTTGMQVCNKVF-------EEKLLCLSWAGEEKVILGGALGMVYLVDLIQVQLLKQVRAHKDAVLSL--HFD 847 (917)
Q Consensus 777 Dg~I~iwDl~tg~~i~~~~~-------~~~i~~l~~s~~~~lv~gs~dG~I~vwdl~~~~~i~~l~~h~~~V~si--s~d 847 (917)
||.|++||+.+++....... ..............+++++.+|.|++||+.+++.+..+.+|...|+++ +++
T Consensus 266 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~ 345 (408)
T 4a11_B 266 DNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSN 345 (408)
T ss_dssp TSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCSSCEEEEEEETT
T ss_pred CCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccCCCeEEEEEEcCC
Confidence 99999999998865432211 111223333455678889999999999999999999999999999998 668
Q ss_pred CCEEEEEeCCCeEEEEECcCCeEEEEecCCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEecCc
Q psy3053 848 NCTMLVGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDE-KRKRLISGNLVGAPKLYATEF 909 (917)
Q Consensus 848 g~~Lasgs~DG~I~Iwdl~tg~~l~~l~~h~~~V~slafSp-dg~~LaSgs~DG~V~IWdl~~ 909 (917)
+++|++|+.||.|++||+.+++.+.....+... ..+.+ ....+.+++.|+.+++|+...
T Consensus 346 ~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~W~~~~ 405 (408)
T 4a11_B 346 FQELYSGSRDCNILAWVPSLYEPVPDDDETTTK---SQLNPAFEDAWSSSDEEGGTSAWSHPQ 405 (408)
T ss_dssp TTEEEEEETTSCEEEEEECC-------------------------------------------
T ss_pred CCEEEEECCCCeEEEEeCCCCCccCCCCceEec---cccccccceeecccCccCceeecCCcc
Confidence 999999999999999999999887665543322 23333 334556778899999998753
No 50
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=1.3e-33 Score=313.14 Aligned_cols=287 Identities=13% Similarity=0.228 Sum_probs=242.7
Q ss_pred eeeccccceEEEEEeCCCCEE-EEEec---ccEEEEEEeccCeeeEEe-ccCCCceeEEEecCC---CCEEEEEECCCeE
Q psy3053 617 SAVLSSMTLSSLCILPDNCTM-LVGCW---DSCVVIYDVECGRIVTEL-AGHEDAISCVAWDEK---RKRLISGSWDCTV 688 (917)
Q Consensus 617 ~~~~~~~~V~sl~~spd~~~L-asgs~---Dg~I~Iwdl~tg~~i~~l-~~H~~~Vt~l~~spd---~~~L~Sgs~DgtI 688 (917)
...+|...|.+++|+|++..+ ++|+. ||.|++||+.+++..... .+|.+.|++++|+|+ +++|++|+.||.|
T Consensus 13 ~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i 92 (357)
T 3i2n_A 13 IQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGGNL 92 (357)
T ss_dssp EEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTSCE
T ss_pred hccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCCCeE
Confidence 345689999999999998654 56665 999999999998765443 379999999999998 6999999999999
Q ss_pred EEEeCCCCCCCccCCcceeeeccCCCceEEEEE------eCCCCEEEEEECCCeEEEEECCCCe-eeEEecCCC----CC
Q psy3053 689 RVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAI------SKDNNQLAVGTEAGELIIWSLENHL-MTQQLSDDI----NA 757 (917)
Q Consensus 689 ~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~------spdg~~Lasgs~dG~I~iwDl~~~~-~~~~l~~~h----~~ 757 (917)
++||+.++. .......+|...|.+++| +|+++.+++|+.||.|++||+.++. ....+. .+ ..
T Consensus 93 ~iwd~~~~~------~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~-~~~~~~~~ 165 (357)
T 3i2n_A 93 HIWNLEAPE------MPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANME-PVQGENKR 165 (357)
T ss_dssp EEECTTSCS------SCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEEC-CCTTSCCC
T ss_pred EEEeCCCCC------ccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceecc-ccCCCCCC
Confidence 999998762 134455689999999955 6789999999999999999999886 566665 33 34
Q ss_pred CeEEEE----EecCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCceEEEEEeC----CCEEEEEeCCCeEEEEECCCCE
Q psy3053 758 SVNGVL----FSEDGCRVLSCGNNCMLNVYDLTTGMQVCNKVFEEKLLCLSWAG----EEKVILGGALGMVYLVDLIQVQ 829 (917)
Q Consensus 758 ~V~~v~----fspdg~~L~s~s~Dg~I~iwDl~tg~~i~~~~~~~~i~~l~~s~----~~~lv~gs~dG~I~vwdl~~~~ 829 (917)
.+.+++ |+|+++.+++++.||.|++||+++++......+...+.+++|+| ...+++|+.+|.|++||+.+++
T Consensus 166 ~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~ 245 (357)
T 3i2n_A 166 DCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQH 245 (357)
T ss_dssp CEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEE
T ss_pred ceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeeecCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCC
Confidence 888998 77899999999999999999999999988888899999999996 4578899999999999998776
Q ss_pred EEEEE-----ecCCCceEEE--eecCC-EEEEEeCCCeEEEEECcCC-------------------eEEEEecCCCCCEE
Q psy3053 830 LLKQV-----RAHKDAVLSL--HFDNC-TMLVGCWDSCVVIYDVECG-------------------RIVTELAGHEDAIS 882 (917)
Q Consensus 830 ~i~~l-----~~h~~~V~si--s~dg~-~Lasgs~DG~I~Iwdl~tg-------------------~~l~~l~~h~~~V~ 882 (917)
....+ .+|...|.++ +++++ ++++|+.||.|++||+.++ +.+..+.+|.++|+
T Consensus 246 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~ 325 (357)
T 3i2n_A 246 PTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPIS 325 (357)
T ss_dssp TTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEE
T ss_pred cccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCee
Confidence 54443 4899999998 55677 8999999999999999754 46778899999999
Q ss_pred EEEEcCCCCEEE-EEeCCCcEEEEecCcc
Q psy3053 883 CVAWDEKRKRLI-SGNLVGAPKLYATEFY 910 (917)
Q Consensus 883 slafSpdg~~La-Sgs~DG~V~IWdl~~~ 910 (917)
+++|+|++++|+ +|+.||.|++|++...
T Consensus 326 ~~~~s~~~~~l~~s~~~d~~i~iw~~~~~ 354 (357)
T 3i2n_A 326 SLDWSPDKRGLCVCSSFDQTVRVLIVTKL 354 (357)
T ss_dssp EEEECSSSTTEEEEEETTSEEEEEEECC-
T ss_pred EEEEcCCCCeEEEEecCCCcEEEEECCCc
Confidence 999999999998 8999999999999753
No 51
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=2e-33 Score=317.09 Aligned_cols=286 Identities=11% Similarity=0.132 Sum_probs=242.5
Q ss_pred cccceeeeccCCcceEEEEEeCCC-cEEEEEecCCceEEEeccCCceeeeee--ccccceEEEEEeC-CCCEEEEEeccc
Q psy3053 569 ILEPLHFCHSHKEAITAVAICGEG-ISVASVGRDAMLKIHSLKTGRQERSAV--LSSMTLSSLCILP-DNCTMLVGCWDS 644 (917)
Q Consensus 569 ~l~~~~~l~~H~~~Vtsv~fSpdg-~~Lasgs~Dg~I~IWd~~t~~~~~~~~--~~~~~V~sl~~sp-d~~~Lasgs~Dg 644 (917)
..+....+.+|.+.|++++|+|+| ++|++|+.||.|++||+.+++....+. .|...|.+++|+| ++..+++|+.||
T Consensus 62 ~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~ 141 (383)
T 3ei3_B 62 SYKLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRG 141 (383)
T ss_dssp TCEEEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTT
T ss_pred ccceEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCC
Confidence 345667889999999999999999 999999999999999999888776665 5899999999999 779999999999
Q ss_pred EEEEEEeccCeeeEEecc---CCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEE
Q psy3053 645 CVVIYDVECGRIVTELAG---HEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAI 721 (917)
Q Consensus 645 ~I~Iwdl~tg~~i~~l~~---H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 721 (917)
.|++||+.+ .....+.. |...|.+++|+|++++|++|+.||.|++||+... .......|...|.+++|
T Consensus 142 ~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~--------~~~~~~~h~~~v~~~~~ 212 (383)
T 3ei3_B 142 ATTLRDFSG-SVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLDGH--------EIFKEKLHKAKVTHAEF 212 (383)
T ss_dssp EEEEEETTS-CEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETTSC--------EEEEEECSSSCEEEEEE
T ss_pred EEEEEECCC-CceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECCCC--------EEEEeccCCCcEEEEEE
Confidence 999999986 44455544 4588999999999999999999999999998432 45556789999999999
Q ss_pred eCCCC-EEEEEECCCeEEEEECCC----CeeeEEecCCCCCCeEEEEEec-CCCEEEEEeCCCeEEEEECCCCeEEEEee
Q psy3053 722 SKDNN-QLAVGTEAGELIIWSLEN----HLMTQQLSDDINASVNGVLFSE-DGCRVLSCGNNCMLNVYDLTTGMQVCNKV 795 (917)
Q Consensus 722 spdg~-~Lasgs~dG~I~iwDl~~----~~~~~~l~~~h~~~V~~v~fsp-dg~~L~s~s~Dg~I~iwDl~tg~~i~~~~ 795 (917)
+|+++ ++++|+.||.|++||+++ +..+..+ .|...|.+++|+| ++..|++++.|+.|++||+++++......
T Consensus 213 ~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~--~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~ 290 (383)
T 3ei3_B 213 NPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM--PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQII 290 (383)
T ss_dssp CSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE--ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEE
T ss_pred CCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe--cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCccccccc
Confidence 99998 999999999999999997 5566665 4889999999999 99999999999999999998875543322
Q ss_pred -c-----------------CCceEEEEEeCCCEEEEEeCCCeEEEEECCCCEEEEEEec--CCCceEEE--eecCCEEEE
Q psy3053 796 -F-----------------EEKLLCLSWAGEEKVILGGALGMVYLVDLIQVQLLKQVRA--HKDAVLSL--HFDNCTMLV 853 (917)
Q Consensus 796 -~-----------------~~~i~~l~~s~~~~lv~gs~dG~I~vwdl~~~~~i~~l~~--h~~~V~si--s~dg~~Las 853 (917)
+ ...+.++++++++.+ +|+.||.|++||+.+++.+..+.+ |...+.++ ++++++|++
T Consensus 291 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~-s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~~g~~l~s 369 (383)
T 3ei3_B 291 IHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL-LLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSPTGDVLAS 369 (383)
T ss_dssp ECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT-CTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEECTTSSEEEE
T ss_pred cccccccccccceEEeccCCCCceEEEecCCccc-ccCCCCeEEEEecCCCceeeeecCCCCCceEEEEEEecCccEEEE
Confidence 1 134455666776666 778899999999999999999987 45666654 779999999
Q ss_pred EeCCCeEEEEECcC
Q psy3053 854 GCWDSCVVIYDVEC 867 (917)
Q Consensus 854 gs~DG~I~Iwdl~t 867 (917)
|+ ||.|++||+++
T Consensus 370 ~s-d~~i~iw~~~~ 382 (383)
T 3ei3_B 370 GM-GFNILIWNRED 382 (383)
T ss_dssp EE-TTEEEEEECC-
T ss_pred ec-CCcEEEEecCC
Confidence 97 99999999864
No 52
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=7.6e-33 Score=343.39 Aligned_cols=331 Identities=16% Similarity=0.188 Sum_probs=270.5
Q ss_pred ccccCCccccceeeeccCCcceEEEEEeCCCcEEEEEecCCceEEEeccCCceeeeeeccccceEEEEEeCCCCEEEEEe
Q psy3053 562 NSWCDKSILEPLHFCHSHKEAITAVAICGEGISVASVGRDAMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTMLVGC 641 (917)
Q Consensus 562 ~~w~~~~~l~~~~~l~~H~~~Vtsv~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~~~~~~~~V~sl~~spd~~~Lasgs 641 (917)
.+|+..+ .+.+..+.+|.++|++++|+|+|++|++|+.||.|++||+.+++.+..+..|...|.+++|+|+++.|++|+
T Consensus 38 ~iwd~~~-~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 116 (814)
T 3mkq_A 38 EIWNYET-QVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGS 116 (814)
T ss_dssp EEEETTT-TEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEE
T ss_pred EEEECCC-CceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEEEEEEeCCCCEEEEEc
Confidence 5787544 356778889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccEEEEEEeccC-eeeEEeccCCCceeEEEecC-CCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEE
Q psy3053 642 WDSCVVIYDVECG-RIVTELAGHEDAISCVAWDE-KRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCL 719 (917)
Q Consensus 642 ~Dg~I~Iwdl~tg-~~i~~l~~H~~~Vt~l~~sp-d~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l 719 (917)
.||.|++||+.++ .....+.+|...|.+++|+| +++.+++++.||+|++||+.++. ........+...+.++
T Consensus 117 ~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~------~~~~~~~~~~~~v~~~ 190 (814)
T 3mkq_A 117 DDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQST------PNFTLTTGQERGVNYV 190 (814)
T ss_dssp TTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSS------CSEEEECCCTTCCCEE
T ss_pred CCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc------ceeEEecCCCCCEEEE
Confidence 9999999999987 77788899999999999999 88999999999999999997652 1222233455889999
Q ss_pred EEeC--CCCEEEEEECCCeEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeEEEEeec-
Q psy3053 720 AISK--DNNQLAVGTEAGELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCNKVF- 796 (917)
Q Consensus 720 ~~sp--dg~~Lasgs~dG~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~tg~~i~~~~~- 796 (917)
+|+| ++..+++|+.||.|++||+.+++.+..+. .|...|.+++|+|+|..+++++.||.|++||+.+++.......
T Consensus 191 ~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~ 269 (814)
T 3mkq_A 191 DYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLE-GHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVG 269 (814)
T ss_dssp EECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEE-CCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCSEEEEECCS
T ss_pred EEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEc-CCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecC
Confidence 9999 99999999999999999999999988887 7889999999999999999999999999999999988776654
Q ss_pred CCceEEEEEeCCCE--EEEEeCCCeEEEEECCCCE----------EEEE-------------------------------
Q psy3053 797 EEKLLCLSWAGEEK--VILGGALGMVYLVDLIQVQ----------LLKQ------------------------------- 833 (917)
Q Consensus 797 ~~~i~~l~~s~~~~--lv~gs~dG~I~vwdl~~~~----------~i~~------------------------------- 833 (917)
...+.+++|+|++. +++++.++.+.+|++.... .+..
T Consensus 270 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (814)
T 3mkq_A 270 LERSWCIATHPTGRKNYIASGFDNGFTVLSLGNDEPTLSLDPVGKLVWSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQT 349 (814)
T ss_dssp SSSEEEEEECTTCGGGEEEEEETTEEEEEECSCCSCCEEECSSSEEEEECCTTSCTTCEEEEECCSCCCCCSSSCBCCCC
T ss_pred CCcEEEEEEccCCCceEEEEEeCCCEEEEEcCCCCceeEECCCCCEEEECcccccceeeeeeecccccccccCccceeee
Confidence 57899999999875 5667778888899876432 2211
Q ss_pred --EecCCCceEEE--eecCCEEEEEeCCCeEEEEECcCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEe
Q psy3053 834 --VRAHKDAVLSL--HFDNCTMLVGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGNLVGAPKLYA 906 (917)
Q Consensus 834 --l~~h~~~V~si--s~dg~~Lasgs~DG~I~Iwdl~tg~~l~~l~~h~~~V~slafSpdg~~LaSgs~DG~V~IWd 906 (917)
+..+...+.++ +|+|+++++++ ||.+.+|++....... .+.|.+++|+|+|+++++++.||.|++|+
T Consensus 350 ~~~~~~~~~~~~~~~spdg~~la~~~-~~~~~i~~~~~~~~~~-----~~~i~~~~~spdg~~la~~~~~g~v~l~~ 420 (814)
T 3mkq_A 350 KELGSVDVFPQSLAHSPNGRFVTVVG-DGEYVIYTALAWRNKA-----FGKCQDFVWGPDSNSYALIDETGQIKYYK 420 (814)
T ss_dssp EEECCCSSCCSEEEECTTSSEEEEEE-TTEEEEEETTTTEEEE-----EEECSEEEECTTSSCEEEECTTCCEEEEE
T ss_pred ecCCCCccCCceeEECCCCCEEEEec-CCEEEEEECccccccC-----CCceEEEEEeCCCCeEEEEeCCCcEEEEE
Confidence 11233334455 77999999988 8999999976543321 23344555555555555555555555554
No 53
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=7.6e-33 Score=315.45 Aligned_cols=287 Identities=18% Similarity=0.241 Sum_probs=239.0
Q ss_pred eccCCcceEEEEEeCCCcEEEEEecCCceEEEeccCCceeeeeec-cccceEEEEEeCCCCEEEEEecccEEEEEEeccC
Q psy3053 576 CHSHKEAITAVAICGEGISVASVGRDAMLKIHSLKTGRQERSAVL-SSMTLSSLCILPDNCTMLVGCWDSCVVIYDVECG 654 (917)
Q Consensus 576 l~~H~~~Vtsv~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~~~~-~~~~V~sl~~spd~~~Lasgs~Dg~I~Iwdl~tg 654 (917)
..+|...+...++++++..+++++.||.|++|++.+++....+.. |...|.+++|+|++++|++|+.||.|++||+.++
T Consensus 87 ~~~~~~~~~~~~~~~s~~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~ 166 (401)
T 4aez_A 87 APGIIDDYYLNLLDWSNLNVVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQ 166 (401)
T ss_dssp CTTCCCCTTCBCEEECTTSEEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTC
T ss_pred CCCCcCCceEEEEeecCCCEEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCC
Confidence 346766655544554556688999999999999999998877766 7888999999999999999999999999999999
Q ss_pred eeeEEeccCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEEEECC
Q psy3053 655 RIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEA 734 (917)
Q Consensus 655 ~~i~~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~d 734 (917)
+.+..+.+|...|.+++|+ ++.+++|+.||.|++||+... ........+|...|.+++|+|+++.+++|+.|
T Consensus 167 ~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~------~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d 238 (401)
T 4aez_A 167 TKLRTMAGHQARVGCLSWN--RHVLSSGSRSGAIHHHDVRIA------NHQIGTLQGHSSEVCGLAWRSDGLQLASGGND 238 (401)
T ss_dssp CEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSS------SCEEEEEECCSSCEEEEEECTTSSEEEEEETT
T ss_pred eEEEEecCCCCceEEEEEC--CCEEEEEcCCCCEEEEecccC------cceeeEEcCCCCCeeEEEEcCCCCEEEEEeCC
Confidence 9999999999999999995 589999999999999999754 12345567899999999999999999999999
Q ss_pred CeEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCE-EEEEe--CCCeEEEEECCCCeEEEEeecCCceEEEEEeCCCEE
Q psy3053 735 GELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCR-VLSCG--NNCMLNVYDLTTGMQVCNKVFEEKLLCLSWAGEEKV 811 (917)
Q Consensus 735 G~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~-L~s~s--~Dg~I~iwDl~tg~~i~~~~~~~~i~~l~~s~~~~l 811 (917)
|.|++||+++++....+. .|...|.+++|+|++.. +++++ .|+.|++||+.+++.+....+...+.+++|+
T Consensus 239 ~~v~iwd~~~~~~~~~~~-~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~s----- 312 (401)
T 4aez_A 239 NVVQIWDARSSIPKFTKT-NHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDAGSQVTSLIWS----- 312 (401)
T ss_dssp SCEEEEETTCSSEEEEEC-CCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEECSSCEEEEEEC-----
T ss_pred CeEEEccCCCCCccEEec-CCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEEEC-----
Confidence 999999999999888887 78999999999997754 44544 5889999998887766554444444444443
Q ss_pred EEEeCCCeEEEEECCCCEEEEEEecCCCceEEEeecCCEEEE--EeCCCeEEEEECcCCeEEE--EecCCCCCEEEEEEc
Q psy3053 812 ILGGALGMVYLVDLIQVQLLKQVRAHKDAVLSLHFDNCTMLV--GCWDSCVVIYDVECGRIVT--ELAGHEDAISCVAWD 887 (917)
Q Consensus 812 v~gs~dG~I~vwdl~~~~~i~~l~~h~~~V~sis~dg~~Las--gs~DG~I~Iwdl~tg~~l~--~l~~h~~~V~slafS 887 (917)
++++.+++ |+.||.|++||+.+++... .+.+|.+.|.+++|+
T Consensus 313 ----------------------------------~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s 358 (401)
T 4aez_A 313 ----------------------------------PHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALS 358 (401)
T ss_dssp ----------------------------------SSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEEC
T ss_pred ----------------------------------CCCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEEC
Confidence 45666777 4478999999988866544 467899999999999
Q ss_pred CCCCEEEEEeCCCcEEEEecCcc
Q psy3053 888 EKRKRLISGNLVGAPKLYATEFY 910 (917)
Q Consensus 888 pdg~~LaSgs~DG~V~IWdl~~~ 910 (917)
|+|++|++++.||.|++|++...
T Consensus 359 ~dg~~l~s~~~dg~i~iw~~~~~ 381 (401)
T 4aez_A 359 PDGRILSTAASDENLKFWRVYDG 381 (401)
T ss_dssp TTSSEEEEECTTSEEEEEECCC-
T ss_pred CCCCEEEEEeCCCcEEEEECCCC
Confidence 99999999999999999999754
No 54
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=3.8e-33 Score=319.62 Aligned_cols=255 Identities=19% Similarity=0.303 Sum_probs=232.6
Q ss_pred ccccCCccccceeeeccCCcceEEEEEeCCCcEEEEEecCCceEEEeccCCceeeeeeccccceEEEEEeCCCCEEEEEe
Q psy3053 562 NSWCDKSILEPLHFCHSHKEAITAVAICGEGISVASVGRDAMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTMLVGC 641 (917)
Q Consensus 562 ~~w~~~~~l~~~~~l~~H~~~Vtsv~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~~~~~~~~V~sl~~spd~~~Lasgs 641 (917)
.+|+..++ +....+.+|.+.|++++|+|+|++|++|+.||+|++||+.+++.+..+.+|...|.+++|+|+++.+++|+
T Consensus 133 ~vwd~~~~-~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s 211 (410)
T 1vyh_C 133 KVWDYETG-DFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSAS 211 (410)
T ss_dssp EEEETTTC-CCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEE
T ss_pred EEEECCCC-cEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEEeCCCCEEEEEe
Confidence 68886543 56788999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccEEEEEEeccCeeeEEeccCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEE
Q psy3053 642 WDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAI 721 (917)
Q Consensus 642 ~Dg~I~Iwdl~tg~~i~~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 721 (917)
.|++|++||+.++.++..+.+|...|.++++++++.+|++|+.||+|++||+.++ .......+|...|.+++|
T Consensus 212 ~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~-------~~~~~~~~h~~~v~~~~~ 284 (410)
T 1vyh_C 212 RDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATK-------ECKAELREHRHVVECISW 284 (410)
T ss_dssp TTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTC-------CEEEEECCCSSCEEEEEE
T ss_pred CCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEcCCCeEEEEECCCC-------ceeeEecCCCceEEEEEE
Confidence 9999999999999999999999999999999999999999999999999999775 234456689999999999
Q ss_pred eCC--------------------CCEEEEEECCCeEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEEeCCCeEE
Q psy3053 722 SKD--------------------NNQLAVGTEAGELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCGNNCMLN 781 (917)
Q Consensus 722 spd--------------------g~~Lasgs~dG~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~Dg~I~ 781 (917)
+|+ +.++++|+.||.|++||++++..+..+. +|...|.+++|+|+|++|++|+.||.|+
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~-~h~~~v~~v~~~~~g~~l~s~s~D~~i~ 363 (410)
T 1vyh_C 285 APESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLV-GHDNWVRGVLFHSGGKFILSCADDKTLR 363 (410)
T ss_dssp CCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEE-CCSSCEEEEEECSSSSCEEEEETTTEEE
T ss_pred cCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEE-CCCCcEEEEEEcCCCCEEEEEeCCCeEE
Confidence 996 6789999999999999999999999888 8999999999999999999999999999
Q ss_pred EEECCCCeEEEEee-cCCceEEEEEeCCC-EEEEEeCCCeEEEEEC
Q psy3053 782 VYDLTTGMQVCNKV-FEEKLLCLSWAGEE-KVILGGALGMVYLVDL 825 (917)
Q Consensus 782 iwDl~tg~~i~~~~-~~~~i~~l~~s~~~-~lv~gs~dG~I~vwdl 825 (917)
+||+.+++.+..+. +...|.+++|++++ .+++|+.||.|++|++
T Consensus 364 vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sgs~D~~i~vW~~ 409 (410)
T 1vyh_C 364 VWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC 409 (410)
T ss_dssp EECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC-
T ss_pred EEECCCCceEEEEcCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEeC
Confidence 99999887766654 66789999999865 5778888999999985
No 55
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=6.8e-33 Score=306.89 Aligned_cols=258 Identities=21% Similarity=0.270 Sum_probs=234.4
Q ss_pred cccccCCcc-ccceeeeccCCcceEEEEEeCCCcEEEEEecCCceEEEeccCCceeeeeeccccceEEEEEeCCCCEEEE
Q psy3053 561 SNSWCDKSI-LEPLHFCHSHKEAITAVAICGEGISVASVGRDAMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTMLV 639 (917)
Q Consensus 561 ~~~w~~~~~-l~~~~~l~~H~~~Vtsv~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~~~~~~~~V~sl~~spd~~~Las 639 (917)
.++|+.... ......+.+|...|.++++++++..+++++.|++|++||+.+++.+..+..+...+.+++|+|++++|++
T Consensus 60 v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~ 139 (321)
T 3ow8_A 60 VKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLAT 139 (321)
T ss_dssp EEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCCCCEEECTTSSEEEE
T ss_pred EEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCCEEEEEeCCCccEEEEEECCCCCEEEE
Confidence 368875432 3445678999999999999999999999999999999999999999999989889999999999999999
Q ss_pred EecccEEEEEEeccCeeeEEeccCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEE
Q psy3053 640 GCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCL 719 (917)
Q Consensus 640 gs~Dg~I~Iwdl~tg~~i~~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l 719 (917)
|+.||.|++|++++++....+..|...|.+++|+|++++|++|+.||.|++||+.++ .......+|..+|.++
T Consensus 140 g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~-------~~~~~~~~h~~~v~~l 212 (321)
T 3ow8_A 140 GTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATG-------KLLHTLEGHAMPIRSL 212 (321)
T ss_dssp ECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT-------EEEEEECCCSSCCCEE
T ss_pred EcCCCcEEEEEcCCCceeEEecCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCC-------cEEEEEcccCCceeEE
Confidence 999999999999999999999999999999999999999999999999999999876 3344566789999999
Q ss_pred EEeCCCCEEEEEECCCeEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeEEEEe-ecCC
Q psy3053 720 AISKDNNQLAVGTEAGELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCNK-VFEE 798 (917)
Q Consensus 720 ~~spdg~~Lasgs~dG~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~tg~~i~~~-~~~~ 798 (917)
+|+|++++|++|+.||.|++||++++.....+. +|...|.+++|+|++.+|++++.|++|++||+.+++.+..+ .+..
T Consensus 213 ~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~ 291 (321)
T 3ow8_A 213 TFSPDSQLLVTASDDGYIKIYDVQHANLAGTLS-GHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQD 291 (321)
T ss_dssp EECTTSCEEEEECTTSCEEEEETTTCCEEEEEC-CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSS
T ss_pred EEcCCCCEEEEEcCCCeEEEEECCCcceeEEEc-CCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCCC
Confidence 999999999999999999999999999888887 89999999999999999999999999999999999988775 4677
Q ss_pred ceEEEEEeCCC-EEEEEeCCCeEEEEECC
Q psy3053 799 KLLCLSWAGEE-KVILGGALGMVYLVDLI 826 (917)
Q Consensus 799 ~i~~l~~s~~~-~lv~gs~dG~I~vwdl~ 826 (917)
.|.+++|++++ .+++++.||.|++||..
T Consensus 292 ~v~~v~~s~~g~~l~s~~~d~~i~vwd~p 320 (321)
T 3ow8_A 292 QVWGVKYNGNGSKIVSVGDDQEIHIYDCP 320 (321)
T ss_dssp CEEEEEECTTSSEEEEEETTCCEEEEECC
T ss_pred cEEEEEECCCCCEEEEEeCCCeEEEEeCC
Confidence 89999999865 58888999999999863
No 56
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.8e-33 Score=313.14 Aligned_cols=297 Identities=13% Similarity=0.165 Sum_probs=248.9
Q ss_pred ceEEEeccCCceeeeeeccccceEEEEEeCCCC-EEEEEecccEEEEEEe----ccCe------eeEEecc---------
Q psy3053 603 MLKIHSLKTGRQERSAVLSSMTLSSLCILPDNC-TMLVGCWDSCVVIYDV----ECGR------IVTELAG--------- 662 (917)
Q Consensus 603 ~I~IWd~~t~~~~~~~~~~~~~V~sl~~spd~~-~Lasgs~Dg~I~Iwdl----~tg~------~i~~l~~--------- 662 (917)
.+.+|++...........|..+|.+++|+|+++ +||+|+.||.|++|++ .+++ ....+..
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (425)
T 1r5m_A 26 IDSSDDLDGFVKILKEIVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSG 105 (425)
T ss_dssp --------CCCEECEEEEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC----
T ss_pred ccccccchhhhhheeeeeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCcccccccccccccccccccccccc
Confidence 446787766555555556678999999999999 9999999999999999 8887 4555544
Q ss_pred -CCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEEEECCCeEEEEE
Q psy3053 663 -HEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGELIIWS 741 (917)
Q Consensus 663 -H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~dG~I~iwD 741 (917)
|.+.|++++|+|++++|++|+.||.|++||... ........|...|.+++|+|+++.+++++.||.|++||
T Consensus 106 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~~~~~--------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd 177 (425)
T 1r5m_A 106 KTTNQVTCLAWSHDGNSIVTGVENGELRLWNKTG--------ALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWN 177 (425)
T ss_dssp --CBCEEEEEECTTSSEEEEEETTSCEEEEETTS--------CEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEE
T ss_pred CCCCceEEEEEcCCCCEEEEEeCCCeEEEEeCCC--------CeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEE
Confidence 688999999999999999999999999999432 24455667899999999999999999999999999999
Q ss_pred CCCCeeeEEecCCCCCC---------------eEEEEEecCCCEEEEEeCCCeEEEEECCCCeEEEEe-ecCCceEEEEE
Q psy3053 742 LENHLMTQQLSDDINAS---------------VNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCNK-VFEEKLLCLSW 805 (917)
Q Consensus 742 l~~~~~~~~l~~~h~~~---------------V~~v~fspdg~~L~s~s~Dg~I~iwDl~tg~~i~~~-~~~~~i~~l~~ 805 (917)
+.+++.+..+. .+... +.+++|+|++ .+++++.+|.|++||+.+++.+... .+...+.+++|
T Consensus 178 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~ 255 (425)
T 1r5m_A 178 VISGTVMQHFE-LKETGGSSINAENHSGDGSLGVDVEWVDDD-KFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEF 255 (425)
T ss_dssp TTTTEEEEEEC-CC---------------CCCBSCCEEEETT-EEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEE
T ss_pred CCCCcEEEEee-ccccCccceeeccccCCcceeeEEEEcCCC-EEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEE
Confidence 99999888877 44444 8999999986 6889999999999999988776555 46778999999
Q ss_pred eCCC-EEEEEeCCCeEEEEECCCCEEEEEEecCCCceEEE--eecCCEEEEEeCCCeEEEEECcCCeEEEEecCCCCCEE
Q psy3053 806 AGEE-KVILGGALGMVYLVDLIQVQLLKQVRAHKDAVLSL--HFDNCTMLVGCWDSCVVIYDVECGRIVTELAGHEDAIS 882 (917)
Q Consensus 806 s~~~-~lv~gs~dG~I~vwdl~~~~~i~~l~~h~~~V~si--s~dg~~Lasgs~DG~I~Iwdl~tg~~l~~l~~h~~~V~ 882 (917)
++++ .+++++.+|.|++||+.+++.+..+.+|...|.++ ++++ .+++++.||.|++||+.+++.+..+..|...|.
T Consensus 256 ~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~ 334 (425)
T 1r5m_A 256 NDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIVDGVPIF 334 (425)
T ss_dssp ETTTTEEEEEETTSCEEEECSSSBSCSEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEECTTCCEE
T ss_pred CCCCCEEEEEcCCCEEEEEECCCCccceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEecccCCccEE
Confidence 9865 68889999999999999999999999999999999 4466 999999999999999999999999999999999
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEecCcc
Q psy3053 883 CVAWDEKRKRLISGNLVGAPKLYATEFY 910 (917)
Q Consensus 883 slafSpdg~~LaSgs~DG~V~IWdl~~~ 910 (917)
+++|+|++++|++++.||.|++|++...
T Consensus 335 ~~~~s~~~~~l~~~~~dg~i~i~~~~~~ 362 (425)
T 1r5m_A 335 AGRISQDGQKYAVAFMDGQVNVYDLKKL 362 (425)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEECHHH
T ss_pred EEEEcCCCCEEEEEECCCeEEEEECCCC
Confidence 9999999999999999999999999743
No 57
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.4e-34 Score=341.48 Aligned_cols=312 Identities=11% Similarity=0.066 Sum_probs=226.7
Q ss_pred EeCCCcEEEEEecCCceEEEeccCCcee----eeeeccccceEEEEEeCC------CCEEEEEecccEEEEEEeccCee-
Q psy3053 588 ICGEGISVASVGRDAMLKIHSLKTGRQE----RSAVLSSMTLSSLCILPD------NCTMLVGCWDSCVVIYDVECGRI- 656 (917)
Q Consensus 588 fSpdg~~Lasgs~Dg~I~IWd~~t~~~~----~~~~~~~~~V~sl~~spd------~~~Lasgs~Dg~I~Iwdl~tg~~- 656 (917)
.+|+++.+++++.|++|+||++.+++.. ..+..|...|.+++|+|+ +.+||+|+.||+|++||+.+++.
T Consensus 169 ~~~~~~~laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~ 248 (524)
T 2j04_B 169 LNEHLEMFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATD 248 (524)
T ss_dssp -------------CEEEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSS
T ss_pred cchhhhhhccCCCCceEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccc
Confidence 3566667777889999999999887643 335567788999999996 57999999999999999987642
Q ss_pred ----------eEEeccCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEE--EEeCC
Q psy3053 657 ----------VTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCL--AISKD 724 (917)
Q Consensus 657 ----------i~~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l--~~spd 724 (917)
...+.+|...|++++|+++ ..|++|+.||+|++||+.++. ........|...|.++ +++++
T Consensus 249 ~~~~~~~~~p~~~l~~h~~~v~sv~~s~~-~~lasgs~DgtV~lWD~~~~~------~~~~~~~~H~~~V~sv~~~~s~~ 321 (524)
T 2j04_B 249 VHVFKMCEKPSLTLSLADSLITTFDFLSP-TTVVCGFKNGFVAEFDLTDPE------VPSFYDQVHDSYILSVSTAYSDF 321 (524)
T ss_dssp SSEEECCCSCSEEECCTTTCEEEEEESSS-SEEEEEETTSEEEEEETTBCS------SCSEEEECSSSCEEEEEEECCTT
T ss_pred cccceeecCceEEEEcCCCCEEEEEecCC-CeEEEEeCCCEEEEEECCCCC------CceEEeecccccEEEEEEEcCCC
Confidence 2367889999999999986 589999999999999997641 1223356899999999 56888
Q ss_pred C-CEEEEEECCCeEEEEECCCCeeeEEecCCCC--CCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeEEE-EeecCCce
Q psy3053 725 N-NQLAVGTEAGELIIWSLENHLMTQQLSDDIN--ASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVC-NKVFEEKL 800 (917)
Q Consensus 725 g-~~Lasgs~dG~I~iwDl~~~~~~~~l~~~h~--~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~tg~~i~-~~~~~~~i 800 (917)
+ .+|++|+.||+|++||+++++....+. +|. ..|.+++|+|+++.+++++.|++|++||++++.... ...+.+.|
T Consensus 322 g~~~laS~S~D~tvklWD~~~~~~~~~~~-~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V 400 (524)
T 2j04_B 322 EDTVVSTVAVDGYFYIFNPKDIATTKTTV-SRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSRETTI 400 (524)
T ss_dssp SCCEEEEEETTSEEEEECGGGHHHHCEEE-EECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEECSSCE
T ss_pred CCeEEEEeccCCeEEEEECCCCCcccccc-cccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccceeeecCCCce
Confidence 7 899999999999999999887665554 333 358899999999999999999999999999887643 34578899
Q ss_pred EEEEEeCCC-EEEEEeCCCeEEEEECCCCEEEEEEec-----CCCceEEE--eecCCEEEEEeCCCeEEEEECc-CCeEE
Q psy3053 801 LCLSWAGEE-KVILGGALGMVYLVDLIQVQLLKQVRA-----HKDAVLSL--HFDNCTMLVGCWDSCVVIYDVE-CGRIV 871 (917)
Q Consensus 801 ~~l~~s~~~-~lv~gs~dG~I~vwdl~~~~~i~~l~~-----h~~~V~si--s~dg~~Lasgs~DG~I~Iwdl~-tg~~l 871 (917)
.+++|+|++ .+++|+.||+|++||+... .+..... +...+.++ +++++.+ .... .+.+|+.. ++..+
T Consensus 401 ~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~-~~~~~~~~~~~~~~~~v~~v~~sp~g~~~-~~~~--~~~~~~~~~~g~~~ 476 (524)
T 2j04_B 401 TAIGVSRLHPMVLAGSADGSLIITNAARR-LLHGIKNSSATQKSLRLWKWDYSIKDDKY-RIDS--SYEVYPLTVNDVSK 476 (524)
T ss_dssp EEEECCSSCCBCEEEETTTEEECCBSCSS-TTTCC------CCCCEEEECBCCSSSCEE-EECC--CCCCCC--------
T ss_pred EEEEeCCCCCeEEEEECCCEEEEEechHh-hccccccCccceeeeEEEEeccCCCCCeE-EccC--CceecccccCCcce
Confidence 999999876 4789999999999998653 1111110 11235566 6677754 2222 23344433 57788
Q ss_pred EEecCCCCCEEEEEEcCCCC---EEEEEeCCCcEEEEecCcce
Q psy3053 872 TELAGHEDAISCVAWDEKRK---RLISGNLVGAPKLYATEFYL 911 (917)
Q Consensus 872 ~~l~~h~~~V~slafSpdg~---~LaSgs~DG~V~IWdl~~~l 911 (917)
..+.+|..+|.+++|+|++. .+|+|+.||.|+||++.+..
T Consensus 477 ~~l~gh~~~V~~Vafsp~~~~~~~lAsg~~~g~vrlw~l~~~~ 519 (524)
T 2j04_B 477 AKIDAHGINITCTKWNETSAGGKCYAFSNSAGLLTLEYLSLEH 519 (524)
T ss_dssp -----CCCSCCCEEECCSTTTTTEEEEECTTSEEEEEECSCC-
T ss_pred eeecCCCceEEEEECCCCCCccHHHHhhccCceEEEEEccccc
Confidence 88999999999999999964 99999999999999998764
No 58
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=3e-33 Score=310.32 Aligned_cols=289 Identities=14% Similarity=0.207 Sum_probs=240.4
Q ss_pred eeeccCCcceEEEEEeCCCcEE-EEEec---CCceEEEeccCCceeeee-eccccceEEEEEeCC---CCEEEEEecccE
Q psy3053 574 HFCHSHKEAITAVAICGEGISV-ASVGR---DAMLKIHSLKTGRQERSA-VLSSMTLSSLCILPD---NCTMLVGCWDSC 645 (917)
Q Consensus 574 ~~l~~H~~~Vtsv~fSpdg~~L-asgs~---Dg~I~IWd~~t~~~~~~~-~~~~~~V~sl~~spd---~~~Lasgs~Dg~ 645 (917)
..+++|.+.|++++|+|++..+ ++|+. ||.|++|++.+++..... ..|..+|.+++|+|+ +.++++|+.||.
T Consensus 12 ~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~ 91 (357)
T 3i2n_A 12 HIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGGN 91 (357)
T ss_dssp EEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTSC
T ss_pred hhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCCCe
Confidence 4568899999999999999655 55655 999999999988765443 368889999999998 699999999999
Q ss_pred EEEEEeccCe-eeEEeccCCCceeEEE------ecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccC----CC
Q psy3053 646 VVIYDVECGR-IVTELAGHEDAISCVA------WDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDL----DN 714 (917)
Q Consensus 646 I~Iwdl~tg~-~i~~l~~H~~~Vt~l~------~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h----~~ 714 (917)
|++||+.+++ .+..+.+|.+.|.+++ |+|+++.|++|+.||+|++||+.++.. .......+ ..
T Consensus 92 i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~------~~~~~~~~~~~~~~ 165 (357)
T 3i2n_A 92 LHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDD------PVANMEPVQGENKR 165 (357)
T ss_dssp EEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSS------CSEEECCCTTSCCC
T ss_pred EEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCC------cceeccccCCCCCC
Confidence 9999999988 8889999999999995 467899999999999999999987621 12222222 34
Q ss_pred ceEEEE----EeCCCCEEEEEECCCeEEEEECCCCeeeEEecCCCCCCeEEEEEec---CCCEEEEEeCCCeEEEEECCC
Q psy3053 715 RIKCLA----ISKDNNQLAVGTEAGELIIWSLENHLMTQQLSDDINASVNGVLFSE---DGCRVLSCGNNCMLNVYDLTT 787 (917)
Q Consensus 715 ~V~~l~----~spdg~~Lasgs~dG~I~iwDl~~~~~~~~l~~~h~~~V~~v~fsp---dg~~L~s~s~Dg~I~iwDl~t 787 (917)
.+.+++ |+|+++.+++|+.||.|++||+++++..... .+...|.+++|+| ++..+++++.||.|++||+++
T Consensus 166 ~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 243 (357)
T 3i2n_A 166 DCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWET--NIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRT 243 (357)
T ss_dssp CEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEEE--ECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEE
T ss_pred ceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeeec--CCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcC
Confidence 788888 6789999999999999999999999876554 5788999999999 999999999999999999987
Q ss_pred CeEEEEe------ecCCceEEEEEeCCCE--EEEEeCCCeEEEEECCCC-------------------EEEEEEecCCCc
Q psy3053 788 GMQVCNK------VFEEKLLCLSWAGEEK--VILGGALGMVYLVDLIQV-------------------QLLKQVRAHKDA 840 (917)
Q Consensus 788 g~~i~~~------~~~~~i~~l~~s~~~~--lv~gs~dG~I~vwdl~~~-------------------~~i~~l~~h~~~ 840 (917)
++..... .+...+.+++|+|++. +++|+.||.|++||+..+ +.+..+.+|...
T Consensus 244 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 323 (357)
T 3i2n_A 244 QHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQP 323 (357)
T ss_dssp EETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSC
T ss_pred CCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCC
Confidence 6543222 5778899999999864 788999999999999753 567888999999
Q ss_pred eEEE--eecCCEEE-EEeCCCeEEEEECcCCeE
Q psy3053 841 VLSL--HFDNCTML-VGCWDSCVVIYDVECGRI 870 (917)
Q Consensus 841 V~si--s~dg~~La-sgs~DG~I~Iwdl~tg~~ 870 (917)
|.++ ++++++++ +|+.||.|++||+.+.+.
T Consensus 324 v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~~~ 356 (357)
T 3i2n_A 324 ISSLDWSPDKRGLCVCSSFDQTVRVLIVTKLNK 356 (357)
T ss_dssp EEEEEECSSSTTEEEEEETTSEEEEEEECC---
T ss_pred eeEEEEcCCCCeEEEEecCCCcEEEEECCCccc
Confidence 9999 56888888 899999999999987654
No 59
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.8e-34 Score=324.47 Aligned_cols=321 Identities=14% Similarity=0.110 Sum_probs=237.0
Q ss_pred eeeccCCcceEEEEEeCCCcEEEEEecCCceEEEeccCC--ceeeeeeccccceEEEEEeCCCCEEEEEecccEEEEEEe
Q psy3053 574 HFCHSHKEAITAVAICGEGISVASVGRDAMLKIHSLKTG--RQERSAVLSSMTLSSLCILPDNCTMLVGCWDSCVVIYDV 651 (917)
Q Consensus 574 ~~l~~H~~~Vtsv~fSpdg~~Lasgs~Dg~I~IWd~~t~--~~~~~~~~~~~~V~sl~~spd~~~Lasgs~Dg~I~Iwdl 651 (917)
..++.|.++|++++|+|+|++|++|+.||.|++|++.++ +....+..|...|.+++|+|++++|++|+.||+|++||+
T Consensus 5 ~~~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~ 84 (377)
T 3dwl_C 5 QVLHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEK 84 (377)
T ss_dssp EEEEECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC--
T ss_pred eeEecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEc
Confidence 345667889999999999999999999999999999988 778888999999999999999999999999999999999
Q ss_pred ccCe---eeEEeccCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeecc-CCCceEEEEEeCCCCE
Q psy3053 652 ECGR---IVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLD-LDNRIKCLAISKDNNQ 727 (917)
Q Consensus 652 ~tg~---~i~~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~-h~~~V~~l~~spdg~~ 727 (917)
.+++ ....+.+|...|++++|+|++++|++|+.|++|++||+.++.. ......... |...|.+++|+|++++
T Consensus 85 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~----~~~~~~~~~~h~~~v~~~~~~~~~~~ 160 (377)
T 3dwl_C 85 RPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQEND----WWVSKHLKRPLRSTILSLDWHPNNVL 160 (377)
T ss_dssp ----CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC---------CCCCEEECSSCCSCEEEEEECTTSSE
T ss_pred CCCCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCccc----ceeeeEeecccCCCeEEEEEcCCCCE
Confidence 9887 6777888999999999999999999999999999999987621 111233444 8999999999999999
Q ss_pred EEEEECCCeEEEEECC------------------CCeeeEEecCCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCe
Q psy3053 728 LAVGTEAGELIIWSLE------------------NHLMTQQLSDDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGM 789 (917)
Q Consensus 728 Lasgs~dG~I~iwDl~------------------~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~tg~ 789 (917)
+++|+.||.|++||+. .++.+..+ .|...|.+++|+|+|++|++++.||.|++||+.+++
T Consensus 161 l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~ 238 (377)
T 3dwl_C 161 LAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY--PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPE 238 (377)
T ss_dssp EEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC--CCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTT
T ss_pred EEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc--cCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCC
Confidence 9999999999999985 24445555 788999999999999999999999999999999886
Q ss_pred E----EEE-eecCCceEEEEEeCCCEEEEEeCCCeEEEEECCCCEE--EEEEecCCCc---------------eEEEeec
Q psy3053 790 Q----VCN-KVFEEKLLCLSWAGEEKVILGGALGMVYLVDLIQVQL--LKQVRAHKDA---------------VLSLHFD 847 (917)
Q Consensus 790 ~----i~~-~~~~~~i~~l~~s~~~~lv~gs~dG~I~vwdl~~~~~--i~~l~~h~~~---------------V~sis~d 847 (917)
. +.. ..+...+.+++|++++.+++++.++.+.+|+...... ...+...... ..++.+.
T Consensus 239 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (377)
T 3dwl_C 239 QPPRALITVKLSQLPLRSLLWANESAIVAAGYNYSPILLQGNESGWAHTRDLDAGTSKTSFTHTGNTGEGREEEGPVSFT 318 (377)
T ss_dssp SCEEECCCEECSSSCEEEEEEEETTEEEEEESSSSEEEECCCC---CCSBCCCSCCCCCCBSSSSSBCCCCCC-------
T ss_pred CcceeeEeecCCCCceEEEEEcCCCCEEEEEcCCcEEEEEeCCCceEEEeeecccccccccccccccccccccccccccc
Confidence 5 333 3456779999999998888777787777888764321 1111111100 1111000
Q ss_pred CCEEEEEeCCCeEEEEECcC--CeEEEEecCCCCCEEEEEEcCCC-C---EEEEEeCCCcEEEEec
Q psy3053 848 NCTMLVGCWDSCVVIYDVEC--GRIVTELAGHEDAISCVAWDEKR-K---RLISGNLVGAPKLYAT 907 (917)
Q Consensus 848 g~~Lasgs~DG~I~Iwdl~t--g~~l~~l~~h~~~V~slafSpdg-~---~LaSgs~DG~V~IWdl 907 (917)
.........+... .........|.+.|+++++.+.. . .|+|||.||.|++||+
T Consensus 319 -------~~~~~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~iWdl 377 (377)
T 3dwl_C 319 -------ALRSTFRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNITAFTSSGTDGRVVLWTL 377 (377)
T ss_dssp -------------------------CCCSSSCSSCEEEEEEEEEETTEEEEEEEEETTSEEEEECC
T ss_pred -------cccccccchhhccccccccccCccccceeEEEeccCCCCCceEEEEeecCCCcEEEecC
Confidence 0001111111110 01122234699999999976543 3 6999999999999985
No 60
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=1.1e-32 Score=308.39 Aligned_cols=247 Identities=15% Similarity=0.197 Sum_probs=211.0
Q ss_pred eccCCcceEEEEEeCCCcEEEEEecCCceEEEeccCCceeee----eeccccceEEEEEeCCCCEEEEEecccEEEEEEe
Q psy3053 576 CHSHKEAITAVAICGEGISVASVGRDAMLKIHSLKTGRQERS----AVLSSMTLSSLCILPDNCTMLVGCWDSCVVIYDV 651 (917)
Q Consensus 576 l~~H~~~Vtsv~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~----~~~~~~~V~sl~~spd~~~Lasgs~Dg~I~Iwdl 651 (917)
...|...|.+++|+|++ .+++|+.||+|+|||+.+++.... ..+|...|.+++|+|++++|++|+.||+|++||+
T Consensus 78 ~~~~~~~v~~~~~s~d~-~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~ 156 (344)
T 4gqb_B 78 GVQTEAGVADLTWVGER-GILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDL 156 (344)
T ss_dssp EEEESSCEEEEEEETTT-EEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred eeccCCCEEEEEEeCCC-eEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEEC
Confidence 34567889999999996 688999999999999999876544 3478999999999999999999999999999999
Q ss_pred ccCeeeEEeccCCCceeEEEecCCC-CEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCC-CCEEE
Q psy3053 652 ECGRIVTELAGHEDAISCVAWDEKR-KRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKD-NNQLA 729 (917)
Q Consensus 652 ~tg~~i~~l~~H~~~Vt~l~~spd~-~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd-g~~La 729 (917)
.+++.+..+.+|.+.|++++|++++ ..|++|+.|++|++||++++... .......+...+.+++|+|+ +.+++
T Consensus 157 ~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~-----~~~~~~~~~~~~~~~~~~p~~~~~l~ 231 (344)
T 4gqb_B 157 AQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPA-----SQIGCSAPGYLPTSLAWHPQQSEVFV 231 (344)
T ss_dssp TTTEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCE-----EECC----CCCEEEEEECSSCTTEEE
T ss_pred CCCcEEEEEcCcCCceEEEEecCCCCCceeeecccccccccccccccee-----eeeecceeeccceeeeecCCCCcceE
Confidence 9999999999999999999999987 47899999999999999876211 11112345667999999995 57889
Q ss_pred EEECCCeEEEEECCCCeeeEEecCCCCCCeEEEEEecCC-CEEEEEeCCCeEEEEECCCCeEEEEeecCCceEEEEEeCC
Q psy3053 730 VGTEAGELIIWSLENHLMTQQLSDDINASVNGVLFSEDG-CRVLSCGNNCMLNVYDLTTGMQVCNKVFEEKLLCLSWAGE 808 (917)
Q Consensus 730 sgs~dG~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg-~~L~s~s~Dg~I~iwDl~tg~~i~~~~~~~~i~~l~~s~~ 808 (917)
+|+.||.|++||+++++.+..+. +|...|.+++|+|+| ++|++|+.|++|++||+.+++......|.+.|.+++|+|+
T Consensus 232 sg~~dg~v~~wd~~~~~~~~~~~-~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~~~~H~~~V~~v~~sp~ 310 (344)
T 4gqb_B 232 FGDENGTVSLVDTKSTSCVLSSA-VHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFRSQAHRDFVRDATWSPL 310 (344)
T ss_dssp EEETTSEEEEEESCC--CCEEEE-CCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEEEECCCSSCEEEEEECSS
T ss_pred EeccCCcEEEEECCCCcEEEEEc-CCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEEEEcCCCCCEEEEEEeCC
Confidence 99999999999999999999988 899999999999998 5799999999999999999998888888999999999986
Q ss_pred C--EEEEEeCCCeEEEEECCCCE
Q psy3053 809 E--KVILGGALGMVYLVDLIQVQ 829 (917)
Q Consensus 809 ~--~lv~gs~dG~I~vwdl~~~~ 829 (917)
+ .+++++.||+|++|++.+..
T Consensus 311 ~~~llas~s~D~~v~~w~v~~~~ 333 (344)
T 4gqb_B 311 NHSLLTTVGWDHQVVHHVVPTEP 333 (344)
T ss_dssp STTEEEEEETTSCEEEEECCC--
T ss_pred CCeEEEEEcCCCeEEEEECCCCC
Confidence 5 35678899999999997654
No 61
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=3.4e-32 Score=312.17 Aligned_cols=277 Identities=14% Similarity=0.199 Sum_probs=229.1
Q ss_pred ceEEEEEeCCCcEEEEEecCCceEEEeccCCceeeeee--ccccceEEEEEeCCCCEEEEEecccEEEEEEeccCeeeEE
Q psy3053 582 AITAVAICGEGISVASVGRDAMLKIHSLKTGRQERSAV--LSSMTLSSLCILPDNCTMLVGCWDSCVVIYDVECGRIVTE 659 (917)
Q Consensus 582 ~Vtsv~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~~~--~~~~~V~sl~~spd~~~Lasgs~Dg~I~Iwdl~tg~~i~~ 659 (917)
.+..|+||++ +.||+| .|++|+|||..+|+..+.+. .|...|++++|+|+|++||+|+.||+|++||+.+++.+..
T Consensus 107 y~~~l~wS~~-n~lAvg-ld~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~ 184 (420)
T 4gga_A 107 YLNLVDWSSG-NVLAVA-LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRN 184 (420)
T ss_dssp TCBCEEECTT-SEEEEE-ETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEE
T ss_pred cceeEEECCC-CEEEEE-eCCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEE
Confidence 3567999976 466665 59999999999999877665 4667899999999999999999999999999999999999
Q ss_pred eccCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEEEECCCeEEE
Q psy3053 660 LAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGELII 739 (917)
Q Consensus 660 l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~dG~I~i 739 (917)
+.+|...+.+++++ +..|++|+.|+.+++||.... ........+|...+.++.++|++..+++++.||.+++
T Consensus 185 ~~~h~~~v~~~s~~--~~~l~sgs~d~~i~~~d~~~~------~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i 256 (420)
T 4gga_A 185 MTSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVA------EHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNV 256 (420)
T ss_dssp ECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSS------SCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred EeCCCCceEEEeeC--CCEEEEEeCCCceeEeeeccc------ceeeEEecccccceeeeeecCCCCeeeeeeccccceE
Confidence 99999999999886 489999999999999998764 2234456789999999999999999999999999999
Q ss_pred EECCCCee----eEEecCCCCCCeEEEEEecCCC-EEEEE--eCCCeEEEEECCCCeEEEEeecCCceEEEEEeCCCEEE
Q psy3053 740 WSLENHLM----TQQLSDDINASVNGVLFSEDGC-RVLSC--GNNCMLNVYDLTTGMQVCNKVFEEKLLCLSWAGEEKVI 812 (917)
Q Consensus 740 wDl~~~~~----~~~l~~~h~~~V~~v~fspdg~-~L~s~--s~Dg~I~iwDl~tg~~i~~~~~~~~i~~l~~s~~~~lv 812 (917)
|+..+++. +.... .|...|.+++|+|++. .++++ +.|++|++||+.++...........+.++.|
T Consensus 257 ~~~~~~~~~~~~~~~~~-~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~~~v~~~~~------- 328 (420)
T 4gga_A 257 WPSAPGEGGWVPLQTFT-QHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILW------- 328 (420)
T ss_dssp EESSCCSSCSCCSEEEC-CCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEECSSCEEEEEE-------
T ss_pred Eeeccccccceeeeeec-ccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeeccccceeeeee-------
Confidence 99987653 33344 6889999999999654 44443 3577777777777665544443333333333
Q ss_pred EEeCCCeEEEEECCCCEEEEEEecCCCceEEEeecCCEEEEEe--CCCeEEEEECcCCeEEEEecCCCCCEEEEEEcCCC
Q psy3053 813 LGGALGMVYLVDLIQVQLLKQVRAHKDAVLSLHFDNCTMLVGC--WDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKR 890 (917)
Q Consensus 813 ~gs~dG~I~vwdl~~~~~i~~l~~h~~~V~sis~dg~~Lasgs--~DG~I~Iwdl~tg~~l~~l~~h~~~V~slafSpdg 890 (917)
+++++.+++++ .||.|++||+.+++++.++.+|.+.|++++|+|||
T Consensus 329 --------------------------------~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~spdg 376 (420)
T 4gga_A 329 --------------------------------SPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDG 376 (420)
T ss_dssp --------------------------------ETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTS
T ss_pred --------------------------------cCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCC
Confidence 44566666554 78999999999999999999999999999999999
Q ss_pred CEEEEEeCCCcEEEEecC
Q psy3053 891 KRLISGNLVGAPKLYATE 908 (917)
Q Consensus 891 ~~LaSgs~DG~V~IWdl~ 908 (917)
++||||+.||+|+|||+.
T Consensus 377 ~~l~S~s~D~tvriWdv~ 394 (420)
T 4gga_A 377 ATVASAAADETLRLWRCF 394 (420)
T ss_dssp SCEEEEETTTEEEEECCS
T ss_pred CEEEEEecCCeEEEEECC
Confidence 999999999999999985
No 62
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=1.1e-33 Score=326.33 Aligned_cols=302 Identities=13% Similarity=0.118 Sum_probs=233.7
Q ss_pred ceeeeccCCcceEEEEEeC-CCcEEEEEecCCceEEEeccCCcee--eeeeccccceEEEEEeC-CCCEEEEEecccEEE
Q psy3053 572 PLHFCHSHKEAITAVAICG-EGISVASVGRDAMLKIHSLKTGRQE--RSAVLSSMTLSSLCILP-DNCTMLVGCWDSCVV 647 (917)
Q Consensus 572 ~~~~l~~H~~~Vtsv~fSp-dg~~Lasgs~Dg~I~IWd~~t~~~~--~~~~~~~~~V~sl~~sp-d~~~Lasgs~Dg~I~ 647 (917)
......+|...|+||+|+| ++++||+|+.||.|+|||+.+++.. ..+.+|...|.+++|+| ++.+|++|+.||+|+
T Consensus 111 ~~~~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~ 190 (435)
T 4e54_B 111 ILQKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTR 190 (435)
T ss_dssp SCCEEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEE
T ss_pred ecccCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEE
Confidence 3455678999999999999 5679999999999999999877644 44567999999999998 688999999999999
Q ss_pred EEEeccCeeeEEecc--CCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCC
Q psy3053 648 IYDVECGRIVTELAG--HEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDN 725 (917)
Q Consensus 648 Iwdl~tg~~i~~l~~--H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg 725 (917)
+||++++........ +...+.+++|+|++.+|++|+.||+|++||++.. ......+|...|.+++|+|++
T Consensus 191 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~--------~~~~~~~h~~~v~~v~~~p~~ 262 (435)
T 4e54_B 191 LQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGK--------ELWNLRMHKKKVTHVALNPCC 262 (435)
T ss_dssp EEETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSSC--------BCCCSBCCSSCEEEEEECTTC
T ss_pred EeeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCcc--------eeEEEecccceEEeeeecCCC
Confidence 999987655444333 3456789999999999999999999999998653 334456789999999999987
Q ss_pred C-EEEEEECCCeEEEEECCCCeeeEEec--CCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeEEEEeec-CC---
Q psy3053 726 N-QLAVGTEAGELIIWSLENHLMTQQLS--DDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCNKVF-EE--- 798 (917)
Q Consensus 726 ~-~Lasgs~dG~I~iwDl~~~~~~~~l~--~~h~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~tg~~i~~~~~-~~--- 798 (917)
. ++++|+.||.|++||+++.+....+. .+|...|.+++|+|+|.+|++++.||.|++||+.++........ ..
T Consensus 263 ~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~ 342 (435)
T 4e54_B 263 DWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHF 342 (435)
T ss_dssp SSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCCCCC
T ss_pred ceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEeccccccc
Confidence 6 78899999999999998876544332 36889999999999999999999999999999998765443221 11
Q ss_pred ---ceEEEEEeCCCEEEEEeCCCeEEEEECCCCEEEEEEecCCCceEEEeecCCEEEEE-eCCCeEEEEECcCCeEEEEe
Q psy3053 799 ---KLLCLSWAGEEKVILGGALGMVYLVDLIQVQLLKQVRAHKDAVLSLHFDNCTMLVG-CWDSCVVIYDVECGRIVTEL 874 (917)
Q Consensus 799 ---~i~~l~~s~~~~lv~gs~dG~I~vwdl~~~~~i~~l~~h~~~V~sis~dg~~Lasg-s~DG~I~Iwdl~tg~~l~~l 874 (917)
.+....|++++.++ +.+.++++..++++ ..++.|++||..+++.+..+
T Consensus 343 ~~~~~~~~~~~~~~~~~----------------------------~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l 394 (435)
T 4e54_B 343 QHLTPIKAAWHPRYNLI----------------------------VVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQL 394 (435)
T ss_dssp SSSCCCBCEECSSSSCE----------------------------EEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEE
T ss_pred ccceeEEEEEcCCCCEE----------------------------EEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEE
Confidence 01112222221111 01113344444443 34568999999999998886
Q ss_pred c-CCCCCEEEE-EEcCCCCEEEEEeCCCcEEEEecCcc
Q psy3053 875 A-GHEDAISCV-AWDEKRKRLISGNLVGAPKLYATEFY 910 (917)
Q Consensus 875 ~-~h~~~V~sl-afSpdg~~LaSgs~DG~V~IWdl~~~ 910 (917)
. +|...|.++ +|+|+|++|++|+ |+.|+||+++..
T Consensus 395 ~~~~~~~v~s~~~fspdg~~lasg~-d~~i~iW~~~~g 431 (435)
T 4e54_B 395 YDPESSGISSLNEFNPMGDTLASAM-GYHILIWSQQEA 431 (435)
T ss_dssp CCSSCCCCCCEEEECTTSSCEEEEC-SSEEEECCCC--
T ss_pred eCCCCCcEEEEEEECCCCCEEEEEc-CCcEEEEECCcC
Confidence 4 688888887 6999999999876 889999999854
No 63
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=5.9e-33 Score=313.56 Aligned_cols=302 Identities=16% Similarity=0.247 Sum_probs=256.0
Q ss_pred cCCceEEEeccCCceeeeeeccccceEEEEEeC-CCCEEEEEecccEEEEEEeccCeeeEEec-------------cCCC
Q psy3053 600 RDAMLKIHSLKTGRQERSAVLSSMTLSSLCILP-DNCTMLVGCWDSCVVIYDVECGRIVTELA-------------GHED 665 (917)
Q Consensus 600 ~Dg~I~IWd~~t~~~~~~~~~~~~~V~sl~~sp-d~~~Lasgs~Dg~I~Iwdl~tg~~i~~l~-------------~H~~ 665 (917)
.++.+++|+++.++....+.+|..+|.+++|+| ++++|++|+.||.|++||+.+++....+. +|..
T Consensus 21 ~~~~~~v~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (408)
T 4a11_B 21 AESTRRVLGLELNKDRDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRY 100 (408)
T ss_dssp HHHHHHHHTEEECTTEEECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSS
T ss_pred ccCcceeeccccCcceeeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCC
Confidence 356688899988888888899999999999999 99999999999999999999886655443 5999
Q ss_pred ceeEEEecC-CCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCC---CCEEEEEECCCeEEEEE
Q psy3053 666 AISCVAWDE-KRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKD---NNQLAVGTEAGELIIWS 741 (917)
Q Consensus 666 ~Vt~l~~sp-d~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd---g~~Lasgs~dG~I~iwD 741 (917)
.|++++|+| ++.+|++++.||.|++||+.++ .......+...+.++++++. +..+++|+.+|.|.+||
T Consensus 101 ~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d 172 (408)
T 4a11_B 101 SVETVQWYPHDTGMFTSSSFDKTLKVWDTNTL--------QTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCD 172 (408)
T ss_dssp CEEEEEECTTCTTCEEEEETTSEEEEEETTTT--------EEEEEEECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEE
T ss_pred cEEEEEEccCCCcEEEEEeCCCeEEEeeCCCC--------ccceeccCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEe
Confidence 999999999 7789999999999999999876 33444557888999999985 45999999999999999
Q ss_pred CCCCeeeEEecCCCCCCeEEEEEecCCC-EEEEEeCCCeEEEEECCCCe-EEEE----------------eecCCceEEE
Q psy3053 742 LENHLMTQQLSDDINASVNGVLFSEDGC-RVLSCGNNCMLNVYDLTTGM-QVCN----------------KVFEEKLLCL 803 (917)
Q Consensus 742 l~~~~~~~~l~~~h~~~V~~v~fspdg~-~L~s~s~Dg~I~iwDl~tg~-~i~~----------------~~~~~~i~~l 803 (917)
+++++.+..+. .|...|.+++|+|++. .+++++.||.|++||++++. .... ..+...+.++
T Consensus 173 ~~~~~~~~~~~-~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 251 (408)
T 4a11_B 173 LKSGSCSHILQ-GHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGL 251 (408)
T ss_dssp SSSSCCCEEEC-CCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEE
T ss_pred CCCcceeeeec-CCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEE
Confidence 99999888887 7899999999999998 58899999999999998764 2222 2356779999
Q ss_pred EEeCCC-EEEEEeCCCeEEEEECCCCEEEEEEecCC------CceEEE-eecCCEEEEEeCCCeEEEEECcCCeEEEEec
Q psy3053 804 SWAGEE-KVILGGALGMVYLVDLIQVQLLKQVRAHK------DAVLSL-HFDNCTMLVGCWDSCVVIYDVECGRIVTELA 875 (917)
Q Consensus 804 ~~s~~~-~lv~gs~dG~I~vwdl~~~~~i~~l~~h~------~~V~si-s~dg~~Lasgs~DG~I~Iwdl~tg~~l~~l~ 875 (917)
+|++++ .+++++.||.|++||+.+++......++. ...... ...+..+++++.||.|++||+.+++.+..+.
T Consensus 252 ~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~ 331 (408)
T 4a11_B 252 CFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLK 331 (408)
T ss_dssp EECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEEC
T ss_pred EEcCCCCEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeec
Confidence 999876 58889999999999999887654443221 111222 2345667778889999999999999999999
Q ss_pred CCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcc
Q psy3053 876 GHEDAISCVAWDEKRKRLISGNLVGAPKLYATEFY 910 (917)
Q Consensus 876 ~h~~~V~slafSpdg~~LaSgs~DG~V~IWdl~~~ 910 (917)
+|.+.|++++|+|++++|++|+.||.|++|+++..
T Consensus 332 ~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~ 366 (408)
T 4a11_B 332 GHYKTVDCCVFQSNFQELYSGSRDCNILAWVPSLY 366 (408)
T ss_dssp CCSSCEEEEEEETTTTEEEEEETTSCEEEEEECC-
T ss_pred cCCCeEEEEEEcCCCCEEEEECCCCeEEEEeCCCC
Confidence 99999999999999999999999999999999865
No 64
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=1.3e-32 Score=310.40 Aligned_cols=282 Identities=12% Similarity=0.080 Sum_probs=219.0
Q ss_pred CcceEEEEEeCCCcEEEEEecCC-------ceEEEeccCCcee----------eeeeccccceEEEEEeCCCCEEEEE--
Q psy3053 580 KEAITAVAICGEGISVASVGRDA-------MLKIHSLKTGRQE----------RSAVLSSMTLSSLCILPDNCTMLVG-- 640 (917)
Q Consensus 580 ~~~Vtsv~fSpdg~~Lasgs~Dg-------~I~IWd~~t~~~~----------~~~~~~~~~V~sl~~spd~~~Lasg-- 640 (917)
.-||.+++|+|||++|++||.|. .|++|++..+... ..+..+...+.++++ +++.+++|
T Consensus 14 g~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~--~~~~~~~g~~ 91 (365)
T 4h5i_A 14 GYPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDA--SKGIILVGCN 91 (365)
T ss_dssp SSCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEE--ETTEEEEECC
T ss_pred CCCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEe--CCCEEEEEEC
Confidence 35899999999999999998644 4999998765432 124456666777655 45566665
Q ss_pred ---------ecccEEEEEEeccCeee----EEe-----ccCCCceeEEEecCCCCEEEEEE--CCCeEEEEeCCCCCCCc
Q psy3053 641 ---------CWDSCVVIYDVECGRIV----TEL-----AGHEDAISCVAWDEKRKRLISGS--WDCTVRVWNTGASWSHM 700 (917)
Q Consensus 641 ---------s~Dg~I~Iwdl~tg~~i----~~l-----~~H~~~Vt~l~~spd~~~L~Sgs--~DgtI~vWdl~~~~~~~ 700 (917)
+.|+.+++|++.++... ... ..+...+.+++|+|||+++++|+ .|++|++||+.++
T Consensus 92 ~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~---- 167 (365)
T 4h5i_A 92 ENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDL---- 167 (365)
T ss_dssp CCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTT----
T ss_pred CCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCC----
Confidence 45788999998765321 111 23456689999999999987655 7899999999876
Q ss_pred cCCcceeeeccCCCceEEEEEeCCCCEEEEEECCCeEEEEECCCCeeeE-EecCCCCCCeEEEEEecCCCEEEEEeCCC-
Q psy3053 701 KPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGELIIWSLENHLMTQ-QLSDDINASVNGVLFSEDGCRVLSCGNNC- 778 (917)
Q Consensus 701 ~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~dG~I~iwDl~~~~~~~-~l~~~h~~~V~~v~fspdg~~L~s~s~Dg- 778 (917)
.......|...|.+++|+|+|+++++++.+ .+.+|+..++.... .....|...|.+++|+|+|+.+++++.|+
T Consensus 168 ----~~~~~~~~~~~V~~v~fspdg~~l~s~s~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~ 242 (365)
T 4h5i_A 168 ----TEKFEIETRGEVKDLHFSTDGKVVAYITGS-SLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKG 242 (365)
T ss_dssp ----EEEEEEECSSCCCEEEECTTSSEEEEECSS-CEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSS
T ss_pred ----cEEEEeCCCCceEEEEEccCCceEEeccce-eEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCc
Confidence 333345688899999999999999999865 46666666665544 34446888999999999999999998876
Q ss_pred ---eEEEEECCCCeEEEEeecCCceEEEEEeCCCEEEEEeCCCeEEEEECCCCEEEEEEecCCCceEEE--eecCCEEEE
Q psy3053 779 ---MLNVYDLTTGMQVCNKVFEEKLLCLSWAGEEKVILGGALGMVYLVDLIQVQLLKQVRAHKDAVLSL--HFDNCTMLV 853 (917)
Q Consensus 779 ---~I~iwDl~tg~~i~~~~~~~~i~~l~~s~~~~lv~gs~dG~I~vwdl~~~~~i~~l~~h~~~V~si--s~dg~~Las 853 (917)
.+++|++..+.... .....+.+|...|+++ +|+|++||+
T Consensus 243 ~~~~i~~~~~~~~~~~~------------------------------------~~~~~~~~~~~~V~~~~~Spdg~~las 286 (365)
T 4h5i_A 243 KGIVLTKISIKSGNTSV------------------------------------LRSKQVTNRFKGITSMDVDMKGELAVL 286 (365)
T ss_dssp CCEEEEEEEEETTEEEE------------------------------------EEEEEEESSCSCEEEEEECTTSCEEEE
T ss_pred ceeEEeecccccceecc------------------------------------eeeeeecCCCCCeEeEEECCCCCceEE
Confidence 46666654432210 1234566788889887 679999999
Q ss_pred EeCCCeEEEEECcCCeEEEEe-cCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecC
Q psy3053 854 GCWDSCVVIYDVECGRIVTEL-AGHEDAISCVAWDEKRKRLISGNLVGAPKLYATE 908 (917)
Q Consensus 854 gs~DG~I~Iwdl~tg~~l~~l-~~h~~~V~slafSpdg~~LaSgs~DG~V~IWdl~ 908 (917)
|+.||+|+|||+.+++++..+ .+|..+|++++|||||++|||||.|++|+||++.
T Consensus 287 gs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip 342 (365)
T 4h5i_A 287 ASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVASVSAANTIHIIKLP 342 (365)
T ss_dssp EETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEECC
T ss_pred EcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcC
Confidence 999999999999999999885 7899999999999999999999999999999995
No 65
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=1.1e-31 Score=292.93 Aligned_cols=277 Identities=15% Similarity=0.211 Sum_probs=226.1
Q ss_pred eEEEEEeCCCcEEEEEecCCceEEEeccCCceeeeee--ccccceEEEEEeCCCCEEEEEecccEEEEEEeccCeeeEEe
Q psy3053 583 ITAVAICGEGISVASVGRDAMLKIHSLKTGRQERSAV--LSSMTLSSLCILPDNCTMLVGCWDSCVVIYDVECGRIVTEL 660 (917)
Q Consensus 583 Vtsv~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~~~--~~~~~V~sl~~spd~~~Lasgs~Dg~I~Iwdl~tg~~i~~l 660 (917)
..+|+||+++ .||+| .|++|+|||+.+++.++.+. .|...|.+++|+|+++++++|+.||+|++|++++++.+..+
T Consensus 28 ~~~l~WS~~~-~lAvg-~D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~ 105 (318)
T 4ggc_A 28 LNLVDWSSGN-VLAVA-LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNM 105 (318)
T ss_dssp CBCEEECTTS-EEEEE-ETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE
T ss_pred ceEEEECCCC-EEEEE-eCCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEe
Confidence 4679999986 56654 69999999999999887765 46678999999999999999999999999999999999999
Q ss_pred ccCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEEEECCCeEEEE
Q psy3053 661 AGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGELIIW 740 (917)
Q Consensus 661 ~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~dG~I~iw 740 (917)
.+|...+.++.+. +..+++|+.++.+++|+.... ........+|...+.+++++++++.+++++.||.|++|
T Consensus 106 ~~h~~~~~~~~~~--~~~l~s~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw 177 (318)
T 4ggc_A 106 TSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVA------EHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVW 177 (318)
T ss_dssp ECCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSS------SCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred cCccceEEEeecC--CCEEEEEecCCceEeeecCCC------ceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEE
Confidence 9999998877665 589999999999999998765 23444567899999999999999999999999999999
Q ss_pred ECCCCeee----EEecCCCCCCeEEEEEecCCCEEE---EEeCCCeEEEEECCCCeEEEEeecCCceEEEEEeCCCEEEE
Q psy3053 741 SLENHLMT----QQLSDDINASVNGVLFSEDGCRVL---SCGNNCMLNVYDLTTGMQVCNKVFEEKLLCLSWAGEEKVIL 813 (917)
Q Consensus 741 Dl~~~~~~----~~l~~~h~~~V~~v~fspdg~~L~---s~s~Dg~I~iwDl~tg~~i~~~~~~~~i~~l~~s~~~~lv~ 813 (917)
|+++++.. .... .+.+.|.+++++|++..++ +++.++.|++||...+.......+...+.++.+
T Consensus 178 d~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~~~~~v~~~~~-------- 248 (318)
T 4ggc_A 178 PSAPGEGGWVPLQTFT-QHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILW-------- 248 (318)
T ss_dssp ESSCBTTBSCCSEEEC-CCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEECSSCEEEEEE--------
T ss_pred ECCCCcccccceeeec-ccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccccccccceeeeeeeee--------
Confidence 99876532 2222 5778899999999765433 445667777777766654443333333333332
Q ss_pred EeCCCeEEEEECCCCEEEEEEecCCCceEEEeecCCEEEEE--eCCCeEEEEECcCCeEEEEecCCCCCEEEEEEcCCCC
Q psy3053 814 GGALGMVYLVDLIQVQLLKQVRAHKDAVLSLHFDNCTMLVG--CWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRK 891 (917)
Q Consensus 814 gs~dG~I~vwdl~~~~~i~~l~~h~~~V~sis~dg~~Lasg--s~DG~I~Iwdl~tg~~l~~l~~h~~~V~slafSpdg~ 891 (917)
+++++.++++ +.||.|++||+.+++++.++.+|.+.|++++|+|+|+
T Consensus 249 -------------------------------~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~spdg~ 297 (318)
T 4ggc_A 249 -------------------------------SPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGA 297 (318)
T ss_dssp -------------------------------ETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSS
T ss_pred -------------------------------cccccceEEEEEcCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCC
Confidence 4455555554 4799999999999999999999999999999999999
Q ss_pred EEEEEeCCCcEEEEecCc
Q psy3053 892 RLISGNLVGAPKLYATEF 909 (917)
Q Consensus 892 ~LaSgs~DG~V~IWdl~~ 909 (917)
+|||||.||+|+|||+..
T Consensus 298 ~l~S~s~D~~v~iWd~~~ 315 (318)
T 4ggc_A 298 TVASAAADETLRLWRCFE 315 (318)
T ss_dssp CEEEEETTTEEEEECCSC
T ss_pred EEEEEecCCeEEEEECCC
Confidence 999999999999999853
No 66
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.5e-33 Score=320.35 Aligned_cols=283 Identities=14% Similarity=0.269 Sum_probs=246.5
Q ss_pred ceEEEEEeCCCC-EEEEE----------ecccEEEEEEeccCe---eeEEeccCCCceeEEEecCCCCEEEEEECCCeEE
Q psy3053 624 TLSSLCILPDNC-TMLVG----------CWDSCVVIYDVECGR---IVTELAGHEDAISCVAWDEKRKRLISGSWDCTVR 689 (917)
Q Consensus 624 ~V~sl~~spd~~-~Lasg----------s~Dg~I~Iwdl~tg~---~i~~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~ 689 (917)
.+.+++|+|+++ ++++| +.|+.|++||+.++. .+..+ .|...|++++|+|++++|++|+.||.|+
T Consensus 14 ~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~v~ 92 (416)
T 2pm9_A 14 RTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASL-QVDSKFNDLDWSHNNKIIAGALDNGSLE 92 (416)
T ss_dssp ESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCC-CCSSCEEEEEECSSSSCEEEEESSSCEE
T ss_pred hcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEE-ecCCceEEEEECCCCCeEEEEccCCeEE
Confidence 578899999987 99999 889999999999875 33333 5899999999999999999999999999
Q ss_pred EEeCCCCCCCccCCcceeeeccCCCceEEEEEeCC-CCEEEEEECCCeEEEEECCCCe------eeEEe--cCCCCCCeE
Q psy3053 690 VWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKD-NNQLAVGTEAGELIIWSLENHL------MTQQL--SDDINASVN 760 (917)
Q Consensus 690 vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd-g~~Lasgs~dG~I~iwDl~~~~------~~~~l--~~~h~~~V~ 760 (917)
+||+..... .........+|...|.+++|+|+ ++++++|+.||.|++||+.+++ ..... ...|...|.
T Consensus 93 vw~~~~~~~---~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~ 169 (416)
T 2pm9_A 93 LYSTNEANN---AINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVI 169 (416)
T ss_dssp EECCSSTTS---CCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCC
T ss_pred Eeecccccc---cccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCee
Confidence 999976311 11244556679999999999998 8999999999999999999876 33322 126888999
Q ss_pred EEEEecC-CCEEEEEeCCCeEEEEECCCCeEEEEeec-------CCceEEEEEeCCC--EEEEEeCCC---eEEEEECCC
Q psy3053 761 GVLFSED-GCRVLSCGNNCMLNVYDLTTGMQVCNKVF-------EEKLLCLSWAGEE--KVILGGALG---MVYLVDLIQ 827 (917)
Q Consensus 761 ~v~fspd-g~~L~s~s~Dg~I~iwDl~tg~~i~~~~~-------~~~i~~l~~s~~~--~lv~gs~dG---~I~vwdl~~ 827 (917)
+++|+|+ +..+++++.||.|++||+++++.+..... ...+.+++|++++ .+++++.++ .|++||+++
T Consensus 170 ~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~ 249 (416)
T 2pm9_A 170 SLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRN 249 (416)
T ss_dssp EEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTS
T ss_pred EEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCC
Confidence 9999998 78999999999999999999998877765 5779999999875 688899998 999999998
Q ss_pred C-EEEEEEe-cCCCceEEEe--e-cCCEEEEEeCCCeEEEEECcCCeEEEEecCCCCCEEEEEEcCCC-CEEEEEeCCCc
Q psy3053 828 V-QLLKQVR-AHKDAVLSLH--F-DNCTMLVGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKR-KRLISGNLVGA 901 (917)
Q Consensus 828 ~-~~i~~l~-~h~~~V~sis--~-dg~~Lasgs~DG~I~Iwdl~tg~~l~~l~~h~~~V~slafSpdg-~~LaSgs~DG~ 901 (917)
+ ..+..+. +|...|.++. + ++++|++|+.||.|++||+.+++.+..+.+|...|.+++|+|++ .+|++++.||.
T Consensus 250 ~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~ 329 (416)
T 2pm9_A 250 ANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFACASFDNK 329 (416)
T ss_dssp TTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSSSCCCCEEECTTCTTEEEECCSSSE
T ss_pred CCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCCCceEEEEECCCCCCEEEEEecCCc
Confidence 6 6677777 8999999994 4 78999999999999999999999999999999999999999999 89999999999
Q ss_pred EEEEecCcc
Q psy3053 902 PKLYATEFY 910 (917)
Q Consensus 902 V~IWdl~~~ 910 (917)
|++|+++..
T Consensus 330 i~iw~~~~~ 338 (416)
T 2pm9_A 330 IEVQTLQNL 338 (416)
T ss_dssp EEEEESCCC
T ss_pred EEEEEccCC
Confidence 999999753
No 67
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=100.00 E-value=3.7e-32 Score=298.35 Aligned_cols=307 Identities=11% Similarity=0.107 Sum_probs=231.9
Q ss_pred eeeeccCCcceEEEEEeCCCcEEEEEecCCceEEEeccCC----ceeeeeeccccceEEEEEeC--CCCEEEEEecccEE
Q psy3053 573 LHFCHSHKEAITAVAICGEGISVASVGRDAMLKIHSLKTG----RQERSAVLSSMTLSSLCILP--DNCTMLVGCWDSCV 646 (917)
Q Consensus 573 ~~~l~~H~~~Vtsv~fSpdg~~Lasgs~Dg~I~IWd~~t~----~~~~~~~~~~~~V~sl~~sp--d~~~Lasgs~Dg~I 646 (917)
...+.+|.+.|++++|+|+|++|++|+.||.|++|++.++ +....+..|...|.+++|+| ++++|++|+.||.|
T Consensus 4 ~~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v 83 (351)
T 3f3f_A 4 QPFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTV 83 (351)
T ss_dssp CCEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCE
T ss_pred cccCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeE
Confidence 3567899999999999999999999999999999999876 35666778999999999999 69999999999999
Q ss_pred EEEEeccC---------eeeEEeccCCCceeEEEecCC--CCEEEEEECCCeEEEEeCCCCCCCccCCc------ceeee
Q psy3053 647 VIYDVECG---------RIVTELAGHEDAISCVAWDEK--RKRLISGSWDCTVRVWNTGASWSHMKPSK------SLVSQ 709 (917)
Q Consensus 647 ~Iwdl~tg---------~~i~~l~~H~~~Vt~l~~spd--~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~------~~~~~ 709 (917)
++||+.++ +....+.+|.+.|++++|+|+ +.+|++++.||.|++||+.++........ .....
T Consensus 84 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~ 163 (351)
T 3f3f_A 84 KLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPP 163 (351)
T ss_dssp EEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCC
T ss_pred EEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhcccccccccccccccc
Confidence 99999987 567888899999999999999 99999999999999999987632211100 00112
Q ss_pred ccCCCceEEEEEeCC---CCEEEEEECCCeEEEEECCCCee--eEEecCCCCCCeEEEEEecCC----CEEEEEeCCCeE
Q psy3053 710 LDLDNRIKCLAISKD---NNQLAVGTEAGELIIWSLENHLM--TQQLSDDINASVNGVLFSEDG----CRVLSCGNNCML 780 (917)
Q Consensus 710 ~~h~~~V~~l~~spd---g~~Lasgs~dG~I~iwDl~~~~~--~~~l~~~h~~~V~~v~fspdg----~~L~s~s~Dg~I 780 (917)
..+...+.+++|+|+ +..+++++.++.+.+|+...+.. ...+. +|...|.+++|+|++ .+|++++.||.|
T Consensus 164 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i 242 (351)
T 3f3f_A 164 ANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLP-GHKSLIRSISWAPSIGRWYQLIATGCKDGRI 242 (351)
T ss_dssp SSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECC-CCCSCEEEEEECCCSSCSSEEEEEEETTSCE
T ss_pred CCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecC-CCCcceeEEEECCCCCCcceEEEEEcCCCeE
Confidence 357788999999997 89999999999999888887765 45555 789999999999998 899999999999
Q ss_pred EEEECCCCeEEEEeecC-CceEEEEEeCCCEEEEEeCCCeEEEEECCCCEEEEEEecCCCceEEEeecCCEEEEEeCCCe
Q psy3053 781 NVYDLTTGMQVCNKVFE-EKLLCLSWAGEEKVILGGALGMVYLVDLIQVQLLKQVRAHKDAVLSLHFDNCTMLVGCWDSC 859 (917)
Q Consensus 781 ~iwDl~tg~~i~~~~~~-~~i~~l~~s~~~~lv~gs~dG~I~vwdl~~~~~i~~l~~h~~~V~sis~dg~~Lasgs~DG~ 859 (917)
++||++++......... ......... ......+.....+...+.
T Consensus 243 ~iwd~~~~~~~~~~~~~~~~~~~~~~~-----------------------------------~~~~~~~~~~~~~~~~~~ 287 (351)
T 3f3f_A 243 RIFKITEKLSPLASEESLTNSNMFDNS-----------------------------------ADVDMDAQGRSDSNTEEK 287 (351)
T ss_dssp EEEEEEECC-----------------------------------------------------------------------
T ss_pred EEEeCCCCcCccccCCcccceeccCCC-----------------------------------ccccccccccccccccee
Confidence 99998765332110000 000000000 000111111233344556
Q ss_pred EEEEECcCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcc-eEEEE
Q psy3053 860 VVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGNLVGAPKLYATEFY-LLYVL 915 (917)
Q Consensus 860 I~Iwdl~tg~~l~~l~~h~~~V~slafSpdg~~LaSgs~DG~V~IWdl~~~-ll~~L 915 (917)
+.+|+....+.+..+.+|.+.|++++|+|++++|++|+.||.|++|+++.. .+.++
T Consensus 288 ~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~ 344 (351)
T 3f3f_A 288 AELQSNLQVELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLWKATYSNEFKCM 344 (351)
T ss_dssp ---CCSEEEEEEEEECTTSSCEEEEEECSSSCCEEEEETTSCEEEEEECTTSCEEEE
T ss_pred eeecccccccEEEEEecccccEEEEEEcCCCCEEEEecCCCcEEEEecCcCcchhhe
Confidence 778888888899999999999999999999999999999999999999853 44444
No 68
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=2.9e-32 Score=314.13 Aligned_cols=298 Identities=16% Similarity=0.280 Sum_probs=247.4
Q ss_pred eeeeccCCcceEEEEEeCCCcEEEEEecCCceEEEeccCCceeeeeeccccceEEEEEeCCCCEEEEEecccEEEEEEec
Q psy3053 573 LHFCHSHKEAITAVAICGEGISVASVGRDAMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTMLVGCWDSCVVIYDVE 652 (917)
Q Consensus 573 ~~~l~~H~~~Vtsv~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~~~~~~~~V~sl~~spd~~~Lasgs~Dg~I~Iwdl~ 652 (917)
+....+|...|+++++ +++.+++|+.||.|++||+.+++....+.+|...|.++++ +++.+++|+.||+|++||+.
T Consensus 126 ~~~~~~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~ 201 (435)
T 1p22_A 126 IHCRSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVN 201 (435)
T ss_dssp EECCCSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESS
T ss_pred EecccCCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECC
Confidence 3344567788998877 7899999999999999999999999999999999999988 78899999999999999999
Q ss_pred cCeeeEEeccCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEEEE
Q psy3053 653 CGRIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGT 732 (917)
Q Consensus 653 tg~~i~~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs 732 (917)
+++.+..+.+|.+.|.+++|++ ..+++|+.||+|++||+.++.. ........+|...|.++++ +++.+++|+
T Consensus 202 ~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~----~~~~~~~~~~~~~v~~~~~--~~~~l~s~~ 273 (435)
T 1p22_A 202 TGEMLNTLIHHCEAVLHLRFNN--GMMVTCSKDRSIAVWDMASPTD----ITLRRVLVGHRAAVNVVDF--DDKYIVSAS 273 (435)
T ss_dssp SCCEEEEECCCCSCEEEEECCT--TEEEEEETTSCEEEEECSSSSC----CEEEEEECCCSSCEEEEEE--ETTEEEEEE
T ss_pred CCcEEEEEcCCCCcEEEEEEcC--CEEEEeeCCCcEEEEeCCCCCC----ceeeeEecCCCCcEEEEEe--CCCEEEEEe
Confidence 9999999999999999999975 6999999999999999977521 1122445688999999999 688999999
Q ss_pred CCCeEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeEEEEee-cCCceEEEEEeCCCEE
Q psy3053 733 EAGELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCNKV-FEEKLLCLSWAGEEKV 811 (917)
Q Consensus 733 ~dG~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~tg~~i~~~~-~~~~i~~l~~s~~~~l 811 (917)
.||.|++||+++++.+..+. .|...|.+++++ +..+++|+.||.|++||+++++.+.... +...+.++++++. .+
T Consensus 274 ~dg~i~vwd~~~~~~~~~~~-~~~~~v~~~~~~--~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~-~l 349 (435)
T 1p22_A 274 GDRTIKVWNTSTCEFVRTLN-GHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNK-RI 349 (435)
T ss_dssp TTSEEEEEETTTCCEEEEEE-CCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEECCSS-EE
T ss_pred CCCeEEEEECCcCcEEEEEc-CCCCcEEEEEeC--CCEEEEEeCCCeEEEEECCCCCEEEEEeCCcCcEEEEEecCC-EE
Confidence 99999999999999999888 889999999984 6799999999999999999998887765 6678999999655 89
Q ss_pred EEEeCCCeEEEEECCCCE---------EEEEEecCCCceEEEeecCCEEEEEeCCCeEEEEECcCCeEEEEecCCCCCEE
Q psy3053 812 ILGGALGMVYLVDLIQVQ---------LLKQVRAHKDAVLSLHFDNCTMLVGCWDSCVVIYDVECGRIVTELAGHEDAIS 882 (917)
Q Consensus 812 v~gs~dG~I~vwdl~~~~---------~i~~l~~h~~~V~sis~dg~~Lasgs~DG~I~Iwdl~tg~~l~~l~~h~~~V~ 882 (917)
++|+.||.|++||+.++. .+..+.+|.+.|.++++++..|++|+.||.|++||+.++....... ...+..
T Consensus 350 ~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~-~~~~~~ 428 (435)
T 1p22_A 350 VSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDEFQIVSSSHDDTILIWDFLNDPAAQAEP-PRSPSR 428 (435)
T ss_dssp EEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEECSSCEEECCSSSEEEEEC------------------
T ss_pred EEEeCCCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEeCCCEEEEEeCCCEEEEEECCCCCCcccCC-CCCCcc
Confidence 999999999999997766 8889999999999999999999999999999999998776554433 233445
Q ss_pred EEEEc
Q psy3053 883 CVAWD 887 (917)
Q Consensus 883 slafS 887 (917)
++.|.
T Consensus 429 ~~~~~ 433 (435)
T 1p22_A 429 TYTYI 433 (435)
T ss_dssp -----
T ss_pred ceeee
Confidence 55554
No 69
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=3.3e-31 Score=305.83 Aligned_cols=284 Identities=20% Similarity=0.373 Sum_probs=252.8
Q ss_pred eeeeeeccccceEEEEEeCCCCEEEEEecccEEEEEEeccCeeeEEeccCCCceeEEEecCCCCEEEEEECCCeEEEEeC
Q psy3053 614 QERSAVLSSMTLSSLCILPDNCTMLVGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNT 693 (917)
Q Consensus 614 ~~~~~~~~~~~V~sl~~spd~~~Lasgs~Dg~I~Iwdl~tg~~i~~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl 693 (917)
....+.+|...+.. ++.++++++++|+.||+|++||+.+++.+..+.+|.+.|++++|+ ++.+++|+.||+|++||+
T Consensus 110 ~~~~l~~h~~~v~~-~~~~~g~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~ 186 (445)
T 2ovr_B 110 SPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNA 186 (445)
T ss_dssp CCEEEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEET
T ss_pred eeEEecccCCCcEE-EEEEcCCEEEEEECCCcEEEEECCCCcEEEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEEC
Confidence 34556778776543 356678999999999999999999999999999999999999998 479999999999999999
Q ss_pred CCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEEEECCCeEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEE
Q psy3053 694 GASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLS 773 (917)
Q Consensus 694 ~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~dG~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s 773 (917)
.++ .......+|...|.+++++ ++.+++|+.||.|++||+.+++.+..+. .|...|.++++ ++..+++
T Consensus 187 ~~~-------~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~~~~~~~~-~~~~~v~~~~~--~~~~l~~ 254 (445)
T 2ovr_B 187 ETG-------ECIHTLYGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETGQCLHVLM-GHVAAVRCVQY--DGRRVVS 254 (445)
T ss_dssp TTT-------EEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEESSSCCEEEEEE-CCSSCEEEEEE--CSSCEEE
T ss_pred CcC-------cEEEEECCCCCcEEEEEec--CCEEEEEeCCCEEEEEECCCCcEEEEEc-CCcccEEEEEE--CCCEEEE
Confidence 876 3445566899999999996 5789999999999999999999988887 78999999999 7889999
Q ss_pred EeCCCeEEEEECCCCeEEEEee-cCCceEEEEEeCCCEEEEEeCCCeEEEEECCCCEEEEEEecCCCceEEEeecCCEEE
Q psy3053 774 CGNNCMLNVYDLTTGMQVCNKV-FEEKLLCLSWAGEEKVILGGALGMVYLVDLIQVQLLKQVRAHKDAVLSLHFDNCTML 852 (917)
Q Consensus 774 ~s~Dg~I~iwDl~tg~~i~~~~-~~~~i~~l~~s~~~~lv~gs~dG~I~vwdl~~~~~i~~l~~h~~~V~sis~dg~~La 852 (917)
++.||.|++||+++++.+.... +...+.++++++. .+++|+.||.|++||+.+++.+..+.+|...+.++++++++++
T Consensus 255 ~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~l~ 333 (445)
T 2ovr_B 255 GAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGI-HVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNILV 333 (445)
T ss_dssp EETTSCEEEEEGGGTEEEEEECCCSSCEEEEEECSS-EEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEETTEEE
T ss_pred EcCCCEEEEEECCCCcEeEEecCCCCceEEEEECCC-EEEEEeCCCeEEEEECCCCCEEEEEcCCcccEEEEEEeCCEEE
Confidence 9999999999999998887765 5678999999554 8999999999999999999999999999999999999999999
Q ss_pred EEeCCCeEEEEECcCCeEEEEecC---CCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcc-eEEEE
Q psy3053 853 VGCWDSCVVIYDVECGRIVTELAG---HEDAISCVAWDEKRKRLISGNLVGAPKLYATEFY-LLYVL 915 (917)
Q Consensus 853 sgs~DG~I~Iwdl~tg~~l~~l~~---h~~~V~slafSpdg~~LaSgs~DG~V~IWdl~~~-ll~~L 915 (917)
+|+.||.|++||+.+++.+..+.+ |..+|++++|+ +++|++|+.||.|++||+... .+..+
T Consensus 334 ~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~ 398 (445)
T 2ovr_B 334 SGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFIRNL 398 (445)
T ss_dssp EEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred EEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEEC--CCEEEEEeCCCeEEEEECCCCceeeee
Confidence 999999999999999999999986 88899999996 579999999999999999744 44444
No 70
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=8.3e-32 Score=310.31 Aligned_cols=271 Identities=20% Similarity=0.330 Sum_probs=241.1
Q ss_pred cccceEEEEEeCCCCEEEEEecccEEEEEEeccCeeeEEeccCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCc
Q psy3053 621 SSMTLSSLCILPDNCTMLVGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHM 700 (917)
Q Consensus 621 ~~~~V~sl~~spd~~~Lasgs~Dg~I~Iwdl~tg~~i~~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~ 700 (917)
+...|.++.+ +++.+++|+.||.|++||+.+++....+.+|.+.|++++| +++.|++|+.||+|++||+.++
T Consensus 132 ~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~---- 203 (435)
T 1p22_A 132 TSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTG---- 203 (435)
T ss_dssp SCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSC----
T ss_pred CCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCC----
Confidence 4456776655 8999999999999999999999999999999999999999 6789999999999999999876
Q ss_pred cCCcceeeeccCCCceEEEEEeCCCCEEEEEECCCeEEEEECCCCeee---EEecCCCCCCeEEEEEecCCCEEEEEeCC
Q psy3053 701 KPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGELIIWSLENHLMT---QQLSDDINASVNGVLFSEDGCRVLSCGNN 777 (917)
Q Consensus 701 ~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~dG~I~iwDl~~~~~~---~~l~~~h~~~V~~v~fspdg~~L~s~s~D 777 (917)
.......+|...|.+++++ ++.+++|+.||.|++||+.++... ..+. +|...|.++++ +++.+++++.|
T Consensus 204 ---~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~-~~~~~v~~~~~--~~~~l~s~~~d 275 (435)
T 1p22_A 204 ---EMLNTLIHHCEAVLHLRFN--NGMMVTCSKDRSIAVWDMASPTDITLRRVLV-GHRAAVNVVDF--DDKYIVSASGD 275 (435)
T ss_dssp ---CEEEEECCCCSCEEEEECC--TTEEEEEETTSCEEEEECSSSSCCEEEEEEC-CCSSCEEEEEE--ETTEEEEEETT
T ss_pred ---cEEEEEcCCCCcEEEEEEc--CCEEEEeeCCCcEEEEeCCCCCCceeeeEec-CCCCcEEEEEe--CCCEEEEEeCC
Confidence 3445566889999999997 469999999999999999987655 3444 78999999999 78899999999
Q ss_pred CeEEEEECCCCeEEEEee-cCCceEEEEEeCCCEEEEEeCCCeEEEEECCCCEEEEEEecCCCceEEEeecCCEEEEEeC
Q psy3053 778 CMLNVYDLTTGMQVCNKV-FEEKLLCLSWAGEEKVILGGALGMVYLVDLIQVQLLKQVRAHKDAVLSLHFDNCTMLVGCW 856 (917)
Q Consensus 778 g~I~iwDl~tg~~i~~~~-~~~~i~~l~~s~~~~lv~gs~dG~I~vwdl~~~~~i~~l~~h~~~V~sis~dg~~Lasgs~ 856 (917)
|.|++||+++++.+.... +...+.+++++++ .+++|+.||.|++||+.+++.+..+.+|...|.++++++.++++|+.
T Consensus 276 g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~-~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~l~sg~~ 354 (435)
T 1p22_A 276 RTIKVWNTSTCEFVRTLNGHKRGIACLQYRDR-LVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKRIVSGAY 354 (435)
T ss_dssp SEEEEEETTTCCEEEEEECCSSCEEEEEEETT-EEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEECCSSEEEEEET
T ss_pred CeEEEEECCcCcEEEEEcCCCCcEEEEEeCCC-EEEEEeCCCeEEEEECCCCCEEEEEeCCcCcEEEEEecCCEEEEEeC
Confidence 999999999998887765 6678999999765 99999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEECcCCe---------EEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcc
Q psy3053 857 DSCVVIYDVECGR---------IVTELAGHEDAISCVAWDEKRKRLISGNLVGAPKLYATEFY 910 (917)
Q Consensus 857 DG~I~Iwdl~tg~---------~l~~l~~h~~~V~slafSpdg~~LaSgs~DG~V~IWdl~~~ 910 (917)
||.|++||+.++. ++..+.+|.+.|.+++| ++.+|++|+.||.|++||+...
T Consensus 355 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~Dg~i~iwd~~~~ 415 (435)
T 1p22_A 355 DGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILIWDFLND 415 (435)
T ss_dssp TSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--CSSCEEECCSSSEEEEEC----
T ss_pred CCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEe--CCCEEEEEeCCCEEEEEECCCC
Confidence 9999999998766 88999999999999999 7889999999999999999754
No 71
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=3.2e-31 Score=295.43 Aligned_cols=257 Identities=13% Similarity=0.169 Sum_probs=222.2
Q ss_pred ceeeeeeccccceEEEEEeCCCCEEEEEecccEEEEEEeccCeeeEEeccCCCceeEEEecCCCCEEEEEECCCeEEEEe
Q psy3053 613 RQERSAVLSSMTLSSLCILPDNCTMLVGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWN 692 (917)
Q Consensus 613 ~~~~~~~~~~~~V~sl~~spd~~~Lasgs~Dg~I~Iwdl~tg~~i~~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWd 692 (917)
+....+.+|...|.+++|+|++++|++|+.||+|++||+.+++.+..+..|...|.+++|+|++++|++|+.|+.|++|+
T Consensus 46 ~~~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~ 125 (340)
T 1got_B 46 RTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYN 125 (340)
T ss_dssp CEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEEE
T ss_pred hhheeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEE
Confidence 34566788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEEEECCCeEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEE
Q psy3053 693 TGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVL 772 (917)
Q Consensus 693 l~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~dG~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~ 772 (917)
+.+.... ........+|...|.++.|++++. +++|+.||.|++||+.+++.+..+. +|.+.|.+++|+|++++++
T Consensus 126 ~~~~~~~---~~~~~~~~~h~~~v~~~~~~~~~~-l~s~s~d~~i~~wd~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~ 200 (340)
T 1got_B 126 LKTREGN---VRVSRELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQTTTFT-GHTGDVMSLSLAPDTRLFV 200 (340)
T ss_dssp TTTCSBS---CEEEEEEECCSSCEEEEEEEETTE-EEEEETTSCEEEEETTTTEEEEEEC-CCSSCEEEEEECTTSSEEE
T ss_pred CccCCCc---ceeEEEecCCCccEEEEEECCCCc-EEEEECCCcEEEEECCCCcEEEEEc-CCCCceEEEEECCCCCEEE
Confidence 9765211 122334568999999999998875 8899999999999999999998887 8999999999999999999
Q ss_pred EEeCCCeEEEEECCCCeEEEEeecCCceEEEEEeCCCEEEEEeCCCeEEEEECCCCEEEEEEecCCCceEEE--eecCCE
Q psy3053 773 SCGNNCMLNVYDLTTGMQVCNKVFEEKLLCLSWAGEEKVILGGALGMVYLVDLIQVQLLKQVRAHKDAVLSL--HFDNCT 850 (917)
Q Consensus 773 s~s~Dg~I~iwDl~tg~~i~~~~~~~~i~~l~~s~~~~lv~gs~dG~I~vwdl~~~~~i~~l~~h~~~V~si--s~dg~~ 850 (917)
+|+.|+.|++||++++.. ...+.+|...|.++ +|++++
T Consensus 201 sg~~d~~v~~wd~~~~~~----------------------------------------~~~~~~h~~~v~~v~~~p~~~~ 240 (340)
T 1got_B 201 SGACDASAKLWDVREGMC----------------------------------------RQTFTGHESDINAICFFPNGNA 240 (340)
T ss_dssp EEETTSCEEEEETTTCSE----------------------------------------EEEECCCSSCEEEEEECTTSSE
T ss_pred EEeCCCcEEEEECCCCee----------------------------------------EEEEcCCcCCEEEEEEcCCCCE
Confidence 999999999999876543 23445677788777 568899
Q ss_pred EEEEeCCCeEEEEECcCCeEEEEecC--CCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcc-eEEE
Q psy3053 851 MLVGCWDSCVVIYDVECGRIVTELAG--HEDAISCVAWDEKRKRLISGNLVGAPKLYATEFY-LLYV 914 (917)
Q Consensus 851 Lasgs~DG~I~Iwdl~tg~~l~~l~~--h~~~V~slafSpdg~~LaSgs~DG~V~IWdl~~~-ll~~ 914 (917)
|++|+.||+|++||+++++.+..+.. +...|++++|+|+|++|++|+.||.|++||+... .+..
T Consensus 241 l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~ 307 (340)
T 1got_B 241 FATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGV 307 (340)
T ss_dssp EEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEE
T ss_pred EEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEEECCCCCEEEEECCCCeEEEEEcccCcEeeE
Confidence 99999999999999999988877653 3357999999999999999999999999998643 4433
No 72
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=3.4e-32 Score=310.23 Aligned_cols=297 Identities=14% Similarity=0.141 Sum_probs=247.6
Q ss_pred ccccCCccccceeeeccCCcceEEEEEeCCCcEEEEEecCCceEEEeccCCceeeeeeccccceEEEEEeCCCCEEEEEe
Q psy3053 562 NSWCDKSILEPLHFCHSHKEAITAVAICGEGISVASVGRDAMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTMLVGC 641 (917)
Q Consensus 562 ~~w~~~~~l~~~~~l~~H~~~Vtsv~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~~~~~~~~V~sl~~spd~~~Lasgs 641 (917)
.+|+.... +....+..| ..+...++++++++|++|+.||.|++||+.+++....+..|...|.+++|+|++++|++|+
T Consensus 81 ~i~d~~~~-~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s 158 (420)
T 3vl1_A 81 FLFNTIIR-DGSKMLKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSS 158 (420)
T ss_dssp EEEECCSE-ETTTTSCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEEEETTSSSSCEEEEEECTTSSEEEEEE
T ss_pred EEEEeccc-ceeeEEecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCcceeeecccccCccEEEEECCCCCEEEEEe
Confidence 56775432 333445555 4556668899999999999999999999999988888889999999999999999999999
Q ss_pred cccEEEEEEeccCeeeEEeccCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeec---cC------
Q psy3053 642 WDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQL---DL------ 712 (917)
Q Consensus 642 ~Dg~I~Iwdl~tg~~i~~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~---~h------ 712 (917)
.||.|++||+.+++.+..+.+|.+.|++++|+|+++.|++|+.||+|++||+.++. ...... .+
T Consensus 159 ~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~-------~~~~~~~~~~~~~~v~~ 231 (420)
T 3vl1_A 159 QDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGT-------TIHTFNRKENPHDGVNS 231 (420)
T ss_dssp TTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTE-------EEEEECBTTBTTCCEEE
T ss_pred CCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCc-------eeEEeecCCCCCCCccE
Confidence 99999999999999999999999999999999999999999999999999998762 111111 22
Q ss_pred ---------------CCceEEEEEeCCCCEEEEEECCCeEEEEECCCCeeeEEecCCCCCCeEEEEEecCCC-EEEEEeC
Q psy3053 713 ---------------DNRIKCLAISKDNNQLAVGTEAGELIIWSLENHLMTQQLSDDINASVNGVLFSEDGC-RVLSCGN 776 (917)
Q Consensus 713 ---------------~~~V~~l~~spdg~~Lasgs~dG~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~-~L~s~s~ 776 (917)
...+.+++|+|+++++++|+.||.|++||+++++....+...|...|.+++|+|++. ++++++.
T Consensus 232 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~ 311 (420)
T 3vl1_A 232 IALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYE 311 (420)
T ss_dssp EEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEET
T ss_pred EEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEeC
Confidence 345555666889999999999999999999999988888767889999999999999 9999999
Q ss_pred CCeEEEEECCCCeE-EEEee--cCCceEEEEEeCCCEEEEEeCCCeEEEEECCCC---------EEEEEEecCCCceEEE
Q psy3053 777 NCMLNVYDLTTGMQ-VCNKV--FEEKLLCLSWAGEEKVILGGALGMVYLVDLIQV---------QLLKQVRAHKDAVLSL 844 (917)
Q Consensus 777 Dg~I~iwDl~tg~~-i~~~~--~~~~i~~l~~s~~~~lv~gs~dG~I~vwdl~~~---------~~i~~l~~h~~~V~si 844 (917)
||.|++||+++++. +.... +...+.++.+.+...+++++.||.|++|++... .....+.+|...|.++
T Consensus 312 dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 391 (420)
T 3vl1_A 312 NGMLAQWDLRSPECPVGEFLINEGTPINNVYFAAGALFVSSGFDTSIKLDIISDPESERPAIEFETPTFLVSNDDAVSQF 391 (420)
T ss_dssp TSEEEEEETTCTTSCSEEEEESTTSCEEEEEEETTEEEEEETTTEEEEEEEECCTTCCSCEECTTSCEEECCSSCCCCEE
T ss_pred CCeEEEEEcCCCcCchhhhhccCCCCceEEEeCCCCEEEEecCCccEEEEeccCCCCCccceeccCccEEccCCcceEEE
Confidence 99999999998743 33333 567788888887768899999999999998763 1123355677888777
Q ss_pred --eecCC---EEEEEeCCCeEEEEECcC
Q psy3053 845 --HFDNC---TMLVGCWDSCVVIYDVEC 867 (917)
Q Consensus 845 --s~dg~---~Lasgs~DG~I~Iwdl~t 867 (917)
++++. .+++++.+|.+.+|+++.
T Consensus 392 ~~s~~~~~~g~l~a~g~~g~~~~~~~~~ 419 (420)
T 3vl1_A 392 CYVSDDESNGEVLEVGKNNFCALYNLSN 419 (420)
T ss_dssp EEECCSSSSCEEEEEETTTEEEEEESCC
T ss_pred EEccCCCCcceEEEEcCCceEEEEeccC
Confidence 67888 788888899999999864
No 73
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=5e-31 Score=305.41 Aligned_cols=281 Identities=19% Similarity=0.243 Sum_probs=245.5
Q ss_pred eeeeeccccce-EEEEEeCCCCEEEEEecccEEEEEEeccCeeeEEeccCCCceeEEEecCCCCEEEEEECCCeEEEEeC
Q psy3053 615 ERSAVLSSMTL-SSLCILPDNCTMLVGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNT 693 (917)
Q Consensus 615 ~~~~~~~~~~V-~sl~~spd~~~Lasgs~Dg~I~Iwdl~tg~~i~~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl 693 (917)
...+.+|...+ .++. ++++++++|+.||+|++||+.+++.+..+.+|.+.|++++|++++ .+++|+.||+|++||+
T Consensus 114 ~~~l~~h~~~v~~~~~--~~~~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~ 190 (464)
T 3v7d_B 114 RTTLRGHMTSVITCLQ--FEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDI 190 (464)
T ss_dssp EEEEECCSSSCEEEEE--EETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEEET
T ss_pred eEEEcCCCCCcEEEEE--ECCCEEEEEcCCCcEEEEECCCCcEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEEC
Confidence 34566777775 4444 467899999999999999999999999999999999999999887 9999999999999999
Q ss_pred CCCCCCccCCcceeeeccCCCceEEEEEe--CCCCEEEEEECCCeEEEEECCCCeee-----------------------
Q psy3053 694 GASWSHMKPSKSLVSQLDLDNRIKCLAIS--KDNNQLAVGTEAGELIIWSLENHLMT----------------------- 748 (917)
Q Consensus 694 ~~~~~~~~~~~~~~~~~~h~~~V~~l~~s--pdg~~Lasgs~dG~I~iwDl~~~~~~----------------------- 748 (917)
.++ .......+|...|.+++++ +++..+++|+.||.|++||+.++...
T Consensus 191 ~~~-------~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (464)
T 3v7d_B 191 KKG-------CCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFV 263 (464)
T ss_dssp TTT-------EEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEE
T ss_pred CCC-------cEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEE
Confidence 876 3444566799999999999 57799999999999999999877532
Q ss_pred EEecCCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeEEEEee-cCCceEEEEEeCCC-EEEEEeCCCeEEEEECC
Q psy3053 749 QQLSDDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCNKV-FEEKLLCLSWAGEE-KVILGGALGMVYLVDLI 826 (917)
Q Consensus 749 ~~l~~~h~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~tg~~i~~~~-~~~~i~~l~~s~~~-~lv~gs~dG~I~vwdl~ 826 (917)
..+. +|...+.++ ++++..+++++.||.|++||+.+++.+.... +...+.++++++++ .+++|+.||.|++||+.
T Consensus 264 ~~~~-~~~~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~ 340 (464)
T 3v7d_B 264 GVLR-GHMASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLE 340 (464)
T ss_dssp EEEC-CCSSCEEEE--EEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETT
T ss_pred EEcc-CccceEEEE--cCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECC
Confidence 2333 677777776 6789999999999999999999999887765 67789999999864 68899999999999999
Q ss_pred CCEEEEEEecCCCceEEEeecCCEEEEEeCCCeEEEEECcCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEe
Q psy3053 827 QVQLLKQVRAHKDAVLSLHFDNCTMLVGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGNLVGAPKLYA 906 (917)
Q Consensus 827 ~~~~i~~l~~h~~~V~sis~dg~~Lasgs~DG~I~Iwdl~tg~~l~~l~~h~~~V~slafSpdg~~LaSgs~DG~V~IWd 906 (917)
+++.+..+.+|...|.++.++++++++|+.||.|++||+.++....... |...+..++|++++.+|++|+ ||.|++||
T Consensus 341 ~~~~~~~~~~h~~~v~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~-dg~i~iwd 418 (464)
T 3v7d_B 341 NGELMYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDANDYSRKFSYH-HTNLSAITTFYVSDNILVSGS-ENQFNIYN 418 (464)
T ss_dssp TTEEEEEECCCSSCEEEEEECSSEEEEEETTSEEEEEETTTCCEEEEEE-CTTCCCEEEEEECSSEEEEEE-TTEEEEEE
T ss_pred CCcEEEEEeCCCCcEEEEEEcCCEEEEEeCCCcEEEEECCCCceeeeec-CCCCccEEEEEeCCCEEEEec-CCeEEEEE
Confidence 9999999999999999999999999999999999999999988776664 677788899999999999998 89999999
Q ss_pred cCcc
Q psy3053 907 TEFY 910 (917)
Q Consensus 907 l~~~ 910 (917)
++..
T Consensus 419 ~~~g 422 (464)
T 3v7d_B 419 LRSG 422 (464)
T ss_dssp TTTC
T ss_pred CCCC
Confidence 9754
No 74
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=9.3e-32 Score=297.11 Aligned_cols=297 Identities=11% Similarity=0.082 Sum_probs=238.6
Q ss_pred eeeeccCCcceEEEEEeCCCcEEEEEecCCceEEEeccCCc---eeeeeeccccceEEEEEeCCCC-EEEEEecccEEEE
Q psy3053 573 LHFCHSHKEAITAVAICGEGISVASVGRDAMLKIHSLKTGR---QERSAVLSSMTLSSLCILPDNC-TMLVGCWDSCVVI 648 (917)
Q Consensus 573 ~~~l~~H~~~Vtsv~fSpdg~~Lasgs~Dg~I~IWd~~t~~---~~~~~~~~~~~V~sl~~spd~~-~Lasgs~Dg~I~I 648 (917)
.....+|.+.|++++|+|++++|++++.||.|++|++.++. .......|...|.+++|+|+++ ++++|+.||.|++
T Consensus 4 ~~~~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~ 83 (342)
T 1yfq_A 4 VQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILK 83 (342)
T ss_dssp EECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEE
T ss_pred eecccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEE
Confidence 34456899999999999999999999999999999998877 3455668889999999999999 9999999999999
Q ss_pred EEe-ccCeeeEEecc--CCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCc-cCCcceeeeccCCCceEEEEEeCC
Q psy3053 649 YDV-ECGRIVTELAG--HEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHM-KPSKSLVSQLDLDNRIKCLAISKD 724 (917)
Q Consensus 649 wdl-~tg~~i~~l~~--H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~-~~~~~~~~~~~h~~~V~~l~~spd 724 (917)
||+ .+++. ..+.+ |...|++++|+| ++.+++++.|+.|++||+.+..... ...........+...|.+++|+++
T Consensus 84 wd~~~~~~~-~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 161 (342)
T 1yfq_A 84 VDLIGSPSF-QALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSS 161 (342)
T ss_dssp ECSSSSSSE-EECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSS
T ss_pred EEeccCCce-EeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEeeCCceEEEEecCC
Confidence 999 87755 67788 999999999999 9999999999999999986510000 000011222347889999999988
Q ss_pred CCEEEEEECCCeEEEEECCC-Cee-eEEecCCCCCCeEEEEEec-CCCEEEEEeCCCeEEEEECCCC------eEEEEee
Q psy3053 725 NNQLAVGTEAGELIIWSLEN-HLM-TQQLSDDINASVNGVLFSE-DGCRVLSCGNNCMLNVYDLTTG------MQVCNKV 795 (917)
Q Consensus 725 g~~Lasgs~dG~I~iwDl~~-~~~-~~~l~~~h~~~V~~v~fsp-dg~~L~s~s~Dg~I~iwDl~tg------~~i~~~~ 795 (917)
+ +++|+.+|.|++||+++ +.. .......+...+.+++|+| +++.+++++.||.+++|++..+ +....+.
T Consensus 162 ~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~ 239 (342)
T 1yfq_A 162 R--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFR 239 (342)
T ss_dssp E--EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEE
T ss_pred c--EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeee
Confidence 7 99999999999999998 543 2333336788999999999 9999999999999999998764 1111110
Q ss_pred cCCceEEEEEeCCCEEEEEeCCCeEEEEECCCCEEEEEEecCCCceEEE--eecCCEEEEEeCCCeEEEEECcCCeEEEE
Q psy3053 796 FEEKLLCLSWAGEEKVILGGALGMVYLVDLIQVQLLKQVRAHKDAVLSL--HFDNCTMLVGCWDSCVVIYDVECGRIVTE 873 (917)
Q Consensus 796 ~~~~i~~l~~s~~~~lv~gs~dG~I~vwdl~~~~~i~~l~~h~~~V~si--s~dg~~Lasgs~DG~I~Iwdl~tg~~l~~ 873 (917)
.. .. . .. -.+|...|.++ ++++++|++|+.||.|++||+.+++.+..
T Consensus 240 ~~---------~~---------~-------~~------~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~ 288 (342)
T 1yfq_A 240 CH---------RL---------N-------LK------DTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKN 288 (342)
T ss_dssp CC---------CC---------C-------TT------CCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEE
T ss_pred cc---------cc---------c-------cc------ccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhh
Confidence 00 00 0 00 01345588887 55899999999999999999999999999
Q ss_pred ecCC-CCCEEEEEEcCCCCEEEEEeCCCc-EEEEe
Q psy3053 874 LAGH-EDAISCVAWDEKRKRLISGNLVGA-PKLYA 906 (917)
Q Consensus 874 l~~h-~~~V~slafSpdg~~LaSgs~DG~-V~IWd 906 (917)
+.+| .++|++++ |++++|++|+.||. .+.|.
T Consensus 289 ~~~~h~~~v~~~~--~~~~~l~s~s~Dg~~~~~~~ 321 (342)
T 1yfq_A 289 FAKFNEDSVVKIA--CSDNILCLATSDDTFKTNAA 321 (342)
T ss_dssp CCCCSSSEEEEEE--ECSSEEEEEEECTHHHHCSS
T ss_pred hhcccCCCceEec--CCCCeEEEEecCCccccccc
Confidence 9998 99999999 99999999999998 44444
No 75
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=6.3e-32 Score=310.34 Aligned_cols=318 Identities=12% Similarity=0.185 Sum_probs=237.0
Q ss_pred cCCcceEEEEEeCCCcEEEEEecCCceEEEeccCCc-----------eeeeeeccc------------cceEEEEEeCCC
Q psy3053 578 SHKEAITAVAICGEGISVASVGRDAMLKIHSLKTGR-----------QERSAVLSS------------MTLSSLCILPDN 634 (917)
Q Consensus 578 ~H~~~Vtsv~fSpdg~~Lasgs~Dg~I~IWd~~t~~-----------~~~~~~~~~------------~~V~sl~~spd~ 634 (917)
.|.+.|++++|+|+|++||+|+.||.|++|++.+++ ....+.+|. ..|.+++|+|++
T Consensus 26 ~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~ 105 (447)
T 3dw8_B 26 AEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQK 105 (447)
T ss_dssp CGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCC
T ss_pred cccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCC
Confidence 467899999999999999999999999999998876 467788887 889999999998
Q ss_pred --CEEEEEecccEEEEEEeccCeee---------------------------------------EE-eccCCCceeEEEe
Q psy3053 635 --CTMLVGCWDSCVVIYDVECGRIV---------------------------------------TE-LAGHEDAISCVAW 672 (917)
Q Consensus 635 --~~Lasgs~Dg~I~Iwdl~tg~~i---------------------------------------~~-l~~H~~~Vt~l~~ 672 (917)
..+++|+.||+|++||+.++... .. ..+|...|++++|
T Consensus 106 ~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 185 (447)
T 3dw8_B 106 NAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISI 185 (447)
T ss_dssp SSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEE
T ss_pred CcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEE
Confidence 79999999999999999875432 12 3689999999999
Q ss_pred cCCCCEEEEEECCCeEEEEeCCCCCCCccC-CcceeeeccCCCceEEEEEeCCC-CEEEEEECCCeEEEEECCCCee---
Q psy3053 673 DEKRKRLISGSWDCTVRVWNTGASWSHMKP-SKSLVSQLDLDNRIKCLAISKDN-NQLAVGTEAGELIIWSLENHLM--- 747 (917)
Q Consensus 673 spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~-~~~~~~~~~h~~~V~~l~~spdg-~~Lasgs~dG~I~iwDl~~~~~--- 747 (917)
+|++++|++| .||+|++||+......... ........+|...|.+++|+|++ +++++|+.||.|++||+++++.
T Consensus 186 ~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 264 (447)
T 3dw8_B 186 NSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDR 264 (447)
T ss_dssp CTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCT
T ss_pred cCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccccc
Confidence 9999999998 7999999999743100000 00001245789999999999998 9999999999999999999886
Q ss_pred -eEEecCCCCC------------CeEEEEEecCCCEEEEEeCCCeEEEEECCC-CeEEEEeecCCc--------------
Q psy3053 748 -TQQLSDDINA------------SVNGVLFSEDGCRVLSCGNNCMLNVYDLTT-GMQVCNKVFEEK-------------- 799 (917)
Q Consensus 748 -~~~l~~~h~~------------~V~~v~fspdg~~L~s~s~Dg~I~iwDl~t-g~~i~~~~~~~~-------------- 799 (917)
...+. .|.. .|.+++|+|+|++|++++. +.|++||+++ ++.+..+.....
T Consensus 265 ~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i 342 (447)
T 3dw8_B 265 HSKLFE-EPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCI 342 (447)
T ss_dssp TCEEEC-CC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSGG
T ss_pred eeeEec-cCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeecccccccccccccccccc
Confidence 56666 5554 8999999999999999999 9999999987 665555443332
Q ss_pred --eEEEEEeCCC-EEEEEeCCCeEEEEECCCCEEEEEEecCCCceEEEe-ecCCEEEEEeCCCeEEEEECcCCeEEEEec
Q psy3053 800 --LLCLSWAGEE-KVILGGALGMVYLVDLIQVQLLKQVRAHKDAVLSLH-FDNCTMLVGCWDSCVVIYDVECGRIVTELA 875 (917)
Q Consensus 800 --i~~l~~s~~~-~lv~gs~dG~I~vwdl~~~~~i~~l~~h~~~V~sis-~dg~~Lasgs~DG~I~Iwdl~tg~~l~~l~ 875 (917)
+..++|++++ .+++|+.||.|++||+.+++.+ .+.+|........ ...+.+..++... .........
T Consensus 343 ~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~ 413 (447)
T 3dw8_B 343 FDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDI-TLEASRENNKPRTVLKPRKVCASGKRK--------KDEISVDSL 413 (447)
T ss_dssp GCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEE-EEECCSTTCCTTCBCCCCCEECSSCCC--------TTCEEGGGC
T ss_pred ccceEEEECCCCCEEEEeccCCEEEEEEcCCCcce-eeeecccccccccccCCccccccCCcc--------ccccccccc
Confidence 2237888765 4778888899999998888765 4444544332111 1122222222110 011111112
Q ss_pred CCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecC
Q psy3053 876 GHEDAISCVAWDEKRKRLISGNLVGAPKLYATE 908 (917)
Q Consensus 876 ~h~~~V~slafSpdg~~LaSgs~DG~V~IWdl~ 908 (917)
.+...|.+++|+|++.+||+++.++ +.+|.-.
T Consensus 414 ~~~~~i~~~~~~p~~~~la~~~~~~-~~~~~~~ 445 (447)
T 3dw8_B 414 DFNKKILHTAWHPKENIIAVATTNN-LYIFQDK 445 (447)
T ss_dssp CTTSCCCEEEECSSSSEEEEECSSC-EEEEECC
T ss_pred ccCCceeEEEECCCCCEEEEEecce-eeeeccc
Confidence 3567899999999999999998886 7787643
No 76
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=3.1e-31 Score=289.72 Aligned_cols=247 Identities=16% Similarity=0.171 Sum_probs=208.1
Q ss_pred eeeccCCcceEEEEEeCCCcEEEEEecCCceEEEeccC--CceeeeeeccccceEEEEEeCC--CCEEEEEecccEEEEE
Q psy3053 574 HFCHSHKEAITAVAICGEGISVASVGRDAMLKIHSLKT--GRQERSAVLSSMTLSSLCILPD--NCTMLVGCWDSCVVIY 649 (917)
Q Consensus 574 ~~l~~H~~~Vtsv~fSpdg~~Lasgs~Dg~I~IWd~~t--~~~~~~~~~~~~~V~sl~~spd--~~~Lasgs~Dg~I~Iw 649 (917)
..+.+|.+.|++++|+|+|++||+|+.|++|++|++.+ ++.+..+.+|..+|.+++|+++ +++|++|+.||+|++|
T Consensus 3 ~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iW 82 (297)
T 2pm7_B 3 VIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIW 82 (297)
T ss_dssp EECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEE
T ss_pred eeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEE
Confidence 45789999999999999999999999999999999974 3667888999999999999864 8999999999999999
Q ss_pred EeccCe--eeEEeccCCCceeEEEecCC--CCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCC-
Q psy3053 650 DVECGR--IVTELAGHEDAISCVAWDEK--RKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKD- 724 (917)
Q Consensus 650 dl~tg~--~i~~l~~H~~~Vt~l~~spd--~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd- 724 (917)
|+.+++ .+..+.+|...|.+++|+|+ +.+|++|+.||+|++||+..... .......+|...|.+++|+|+
T Consensus 83 d~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~-----~~~~~~~~h~~~v~~~~~~p~~ 157 (297)
T 2pm7_B 83 KEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGT-----TSPIIIDAHAIGVNSASWAPAT 157 (297)
T ss_dssp EBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSC-----BCCEEEECCSSCEEEEEECCCC
T ss_pred EcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCc-----eeeeeeecccCccceEeecCCc
Confidence 999874 56678889999999999997 88999999999999999876421 112345678999999999997
Q ss_pred ------------CCEEEEEECCCeEEEEECCCCe----eeEEecCCCCCCeEEEEEecCC---CEEEEEeCCCeEEEEEC
Q psy3053 725 ------------NNQLAVGTEAGELIIWSLENHL----MTQQLSDDINASVNGVLFSEDG---CRVLSCGNNCMLNVYDL 785 (917)
Q Consensus 725 ------------g~~Lasgs~dG~I~iwDl~~~~----~~~~l~~~h~~~V~~v~fspdg---~~L~s~s~Dg~I~iwDl 785 (917)
++.|++|+.||.|++||++++. ....+. +|...|.+++|+|++ .+|++++.|++|++||+
T Consensus 158 ~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~-~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~ 236 (297)
T 2pm7_B 158 IEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLE-GHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQ 236 (297)
T ss_dssp ------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEEC-CCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEE
T ss_pred ccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEec-CCCCceEEEEECCCCCCceEEEEEECCCcEEEEEe
Confidence 5799999999999999998765 455565 899999999999984 89999999999999999
Q ss_pred CCCe---EEEE---eecCCceEEEEEeCCCE-EEEEeCCCeEEEEECC
Q psy3053 786 TTGM---QVCN---KVFEEKLLCLSWAGEEK-VILGGALGMVYLVDLI 826 (917)
Q Consensus 786 ~tg~---~i~~---~~~~~~i~~l~~s~~~~-lv~gs~dG~I~vwdl~ 826 (917)
.++. .... ..+...+.+++|+|++. +++++.||.|++|+..
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~ 284 (297)
T 2pm7_B 237 DNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN 284 (297)
T ss_dssp SSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEEC
T ss_pred CCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEEC
Confidence 7642 1111 23456788888887654 6677888888888865
No 77
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=100.00 E-value=3.6e-31 Score=294.13 Aligned_cols=289 Identities=13% Similarity=0.176 Sum_probs=242.5
Q ss_pred EeccCCceeeeeeccccceEEEEEeCC---CCEEEEEecccEEEEEEecc-Ceee-EEeccCCCceeEEEecCCCCEEEE
Q psy3053 607 HSLKTGRQERSAVLSSMTLSSLCILPD---NCTMLVGCWDSCVVIYDVEC-GRIV-TELAGHEDAISCVAWDEKRKRLIS 681 (917)
Q Consensus 607 Wd~~t~~~~~~~~~~~~~V~sl~~spd---~~~Lasgs~Dg~I~Iwdl~t-g~~i-~~l~~H~~~Vt~l~~spd~~~L~S 681 (917)
|+....+.+..+..|...|.+++|+|+ +++|++|+.||.|++||+.+ +..+ ..+.+|.+.|++++|+|++++|++
T Consensus 24 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s 103 (368)
T 3mmy_A 24 DNHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFT 103 (368)
T ss_dssp CSSCTTCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEE
T ss_pred CCCCCcceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEE
Confidence 344556677788899999999999999 59999999999999999997 5554 788899999999999999999999
Q ss_pred EECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEE--eCCCCEEEEEECCCeEEEEECCCCeeeEEecCCCCCCe
Q psy3053 682 GSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAI--SKDNNQLAVGTEAGELIIWSLENHLMTQQLSDDINASV 759 (917)
Q Consensus 682 gs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~--spdg~~Lasgs~dG~I~iwDl~~~~~~~~l~~~h~~~V 759 (917)
|+.||.|++||+.++ .......|...|.+++| ++++.++++|+.||.|++||+++++.+..+. . ...+
T Consensus 104 ~~~dg~v~iwd~~~~--------~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~-~-~~~~ 173 (368)
T 3mmy_A 104 ASCDKTAKMWDLSSN--------QAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQ-L-PERC 173 (368)
T ss_dssp EETTSEEEEEETTTT--------EEEEEEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEE-C-SSCE
T ss_pred EcCCCcEEEEEcCCC--------CceeeccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEe-c-CCCc
Confidence 999999999999876 34446679999999999 8999999999999999999999999888887 3 3456
Q ss_pred EEEEEecCCCEEEEEeCCCeEEEEECCCCeEEEEee---cCCceEEEEEe--CC---CEEEEEeCCCeEEEEECCCC---
Q psy3053 760 NGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCNKV---FEEKLLCLSWA--GE---EKVILGGALGMVYLVDLIQV--- 828 (917)
Q Consensus 760 ~~v~fspdg~~L~s~s~Dg~I~iwDl~tg~~i~~~~---~~~~i~~l~~s--~~---~~lv~gs~dG~I~vwdl~~~--- 828 (917)
.++.+. +..+++++.++.+.+|++.......... ......++++. +. ..+++++.+|.|++||+...
T Consensus 174 ~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~ 251 (368)
T 3mmy_A 174 YCADVI--YPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPA 251 (368)
T ss_dssp EEEEEE--TTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHH
T ss_pred eEEEec--CCeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCcc
Confidence 666665 4588899999999999998765443322 23445555554 22 13999999999999999987
Q ss_pred EEEEEEecCCC------------ceEEE--eecCCEEEEEeCCCeEEEEECcCCeEEEEecCCCCCEEEEEEcCCCCEEE
Q psy3053 829 QLLKQVRAHKD------------AVLSL--HFDNCTMLVGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLI 894 (917)
Q Consensus 829 ~~i~~l~~h~~------------~V~si--s~dg~~Lasgs~DG~I~Iwdl~tg~~l~~l~~h~~~V~slafSpdg~~La 894 (917)
..+..+.+|.. .|.++ ++++++|++|+.||.|++||+.+++++..+.+|..+|++++|+|+|++|+
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~ 331 (368)
T 3mmy_A 252 KDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISACCFNHNGNIFA 331 (368)
T ss_dssp HHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSCEEEEEECTTSSCEE
T ss_pred ccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEecCCCCCceEEEECCCCCeEE
Confidence 55667777765 68888 66899999999999999999999999999999999999999999999999
Q ss_pred EEeCCCcEEEEec
Q psy3053 895 SGNLVGAPKLYAT 907 (917)
Q Consensus 895 Sgs~DG~V~IWdl 907 (917)
+|+.|+..+.|++
T Consensus 332 ~~s~d~~~~~~~~ 344 (368)
T 3mmy_A 332 YASSYDWSKGHEF 344 (368)
T ss_dssp EEECCCSTTCGGG
T ss_pred EEecccccccccc
Confidence 9999986555554
No 78
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=6.1e-32 Score=306.11 Aligned_cols=266 Identities=12% Similarity=0.144 Sum_probs=224.2
Q ss_pred EEEeccCCceeeeeeccccceEEEEEeCCCCEEEEEecccEEEEEEeccCeeeEEeccCCCceeEEEecCCCCEEEEEEC
Q psy3053 605 KIHSLKTGRQERSAVLSSMTLSSLCILPDNCTMLVGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGSW 684 (917)
Q Consensus 605 ~IWd~~t~~~~~~~~~~~~~V~sl~~spd~~~Lasgs~Dg~I~Iwdl~tg~~i~~l~~H~~~Vt~l~~spd~~~L~Sgs~ 684 (917)
..|+..+..+.+.+.+|...|.+++|+|++++|++|+.||+|++||+.+++....+.+|...|.+++|+|++++|++|+.
T Consensus 49 ~~~~~~~~~~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~ 128 (380)
T 3iz6_a 49 VSFNPTDLVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGL 128 (380)
T ss_dssp CCCCCCCCEEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEECCS
T ss_pred cccccceeEEeecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEEeeC
Confidence 34555556667788999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCC-CEEEEEECCCeEEEEECCCCeeeEEec----CCCCCCe
Q psy3053 685 DCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDN-NQLAVGTEAGELIIWSLENHLMTQQLS----DDINASV 759 (917)
Q Consensus 685 DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg-~~Lasgs~dG~I~iwDl~~~~~~~~l~----~~h~~~V 759 (917)
|+.|++||+.+...............+|.+.|.+++|+|++ ..+++|+.||+|++||+.+++.+..+. .+|...|
T Consensus 129 d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v 208 (380)
T 3iz6_a 129 DSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADV 208 (380)
T ss_dssp SSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCE
T ss_pred CCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCe
Confidence 99999999976532222222333456899999999999974 579999999999999999998887662 3678889
Q ss_pred EEEEEec-CCCEEEEEeCCCeEEEEECCCCeEEEEeecCCceEEEEEeCCCEEEEEeCCCeEEEEECCCCEEEEEEecCC
Q psy3053 760 NGVLFSE-DGCRVLSCGNNCMLNVYDLTTGMQVCNKVFEEKLLCLSWAGEEKVILGGALGMVYLVDLIQVQLLKQVRAHK 838 (917)
Q Consensus 760 ~~v~fsp-dg~~L~s~s~Dg~I~iwDl~tg~~i~~~~~~~~i~~l~~s~~~~lv~gs~dG~I~vwdl~~~~~i~~l~~h~ 838 (917)
.+++|++ ++..+++|+.|++|++||++.. ++.+..+.+|.
T Consensus 209 ~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~---------------------------------------~~~~~~~~~h~ 249 (380)
T 3iz6_a 209 LSLSINSLNANMFISGSCDTTVRLWDLRIT---------------------------------------SRAVRTYHGHE 249 (380)
T ss_dssp EEEEECSSSCCEEEEEETTSCEEEEETTTT---------------------------------------CCCCEEECCCS
T ss_pred EEEEeecCCCCEEEEEECCCeEEEEECCCC---------------------------------------CcceEEECCcC
Confidence 9999977 7888889988988888887632 12234556788
Q ss_pred CceEEE--eecCCEEEEEeCCCeEEEEECcCCeEEEEecCCC-------CCEEEEEEcCCCCEEEEEeCCCcEEEEecCc
Q psy3053 839 DAVLSL--HFDNCTMLVGCWDSCVVIYDVECGRIVTELAGHE-------DAISCVAWDEKRKRLISGNLVGAPKLYATEF 909 (917)
Q Consensus 839 ~~V~si--s~dg~~Lasgs~DG~I~Iwdl~tg~~l~~l~~h~-------~~V~slafSpdg~~LaSgs~DG~V~IWdl~~ 909 (917)
+.|.++ +|++++|++|+.||+|++||+++++.+..+..+. ..|++++|+|+|++|++|+.||.|++||+..
T Consensus 250 ~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~ 329 (380)
T 3iz6_a 250 GDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLL 329 (380)
T ss_dssp SCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTT
T ss_pred CCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCC
Confidence 888887 5688999999999999999999999888876543 2489999999999999999999999999864
No 79
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=2.7e-30 Score=289.97 Aligned_cols=261 Identities=15% Similarity=0.141 Sum_probs=221.0
Q ss_pred ceeeeeeccccceEEEEEeCCCCEEEEEecccEEEEEEeccCeeeEEeccCCCceeEEEecCCCCEEEEEECCCeEEEEe
Q psy3053 613 RQERSAVLSSMTLSSLCILPDNCTMLVGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWN 692 (917)
Q Consensus 613 ~~~~~~~~~~~~V~sl~~spd~~~Lasgs~Dg~I~Iwdl~tg~~i~~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWd 692 (917)
+..+.+.+|...|.+++|+|++++|++|+.||+|++||..+++....+..|...|.+++|+|++..+++|+.|+.+++|+
T Consensus 55 ~~~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~ 134 (354)
T 2pbi_B 55 KTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYP 134 (354)
T ss_dssp CEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEE
T ss_pred EEEEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEE
Confidence 34566788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEEEECCCeEEEEECCCCeeeEEecCCCCCCeEEEEEec--CCCE
Q psy3053 693 TGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGELIIWSLENHLMTQQLSDDINASVNGVLFSE--DGCR 770 (917)
Q Consensus 693 l~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~dG~I~iwDl~~~~~~~~l~~~h~~~V~~v~fsp--dg~~ 770 (917)
+....... ..........|...|.+++|+|++..+++|+.||+|++||+++++.+..+. +|...|.+++++| +|..
T Consensus 135 ~~~~~~~~-~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~-~h~~~v~~~~~~~~~~g~~ 212 (354)
T 2pbi_B 135 LTFDKNEN-MAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFH-GHGADVLCLDLAPSETGNT 212 (354)
T ss_dssp CCCCTTCC-SGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEE-CCSSCEEEEEECCCSSCCE
T ss_pred Eecccccc-ccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEc-CCCCCeEEEEEEeCCCCCE
Confidence 86542111 112334456799999999999999999999999999999999999998887 8889999999987 4678
Q ss_pred EEEEeCCCeEEEEECCCCeEEEEeecCCceEEEEEeCCCEEEEEeCCCeEEEEECCCCEEEEEEecCCCceEEE--eecC
Q psy3053 771 VLSCGNNCMLNVYDLTTGMQVCNKVFEEKLLCLSWAGEEKVILGGALGMVYLVDLIQVQLLKQVRAHKDAVLSL--HFDN 848 (917)
Q Consensus 771 L~s~s~Dg~I~iwDl~tg~~i~~~~~~~~i~~l~~s~~~~lv~gs~dG~I~vwdl~~~~~i~~l~~h~~~V~si--s~dg 848 (917)
+++|+.||.|++||+++++ ++..+.+|...|.++ +|++
T Consensus 213 l~sgs~Dg~v~~wd~~~~~----------------------------------------~~~~~~~h~~~v~~v~~~p~~ 252 (354)
T 2pbi_B 213 FVSGGCDKKAMVWDMRSGQ----------------------------------------CVQAFETHESDVNSVRYYPSG 252 (354)
T ss_dssp EEEEETTSCEEEEETTTCC----------------------------------------EEEEECCCSSCEEEEEECTTS
T ss_pred EEEEeCCCeEEEEECCCCc----------------------------------------EEEEecCCCCCeEEEEEeCCC
Confidence 8888888888888776654 334455678888877 5578
Q ss_pred CEEEEEeCCCeEEEEECcCCeEEEEecCC--CCCEEEEEEcCCCCEEEEEeCCCcEEEEecC-cceEEEE
Q psy3053 849 CTMLVGCWDSCVVIYDVECGRIVTELAGH--EDAISCVAWDEKRKRLISGNLVGAPKLYATE-FYLLYVL 915 (917)
Q Consensus 849 ~~Lasgs~DG~I~Iwdl~tg~~l~~l~~h--~~~V~slafSpdg~~LaSgs~DG~V~IWdl~-~~ll~~L 915 (917)
..+++|+.||+|++||+++++.+..+..+ ...+++++|+|+|++|++|+.||.|++||+. +..+..+
T Consensus 253 ~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l 322 (354)
T 2pbi_B 253 DAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSIL 322 (354)
T ss_dssp SEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEE
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEE
Confidence 99999999999999999998887776544 3578999999999999999999999999995 4444443
No 80
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=2.1e-30 Score=286.22 Aligned_cols=251 Identities=16% Similarity=0.187 Sum_probs=220.4
Q ss_pred eeeEEeccCCCceeEEEecCCC-CEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEEEEC
Q psy3053 655 RIVTELAGHEDAISCVAWDEKR-KRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTE 733 (917)
Q Consensus 655 ~~i~~l~~H~~~Vt~l~~spd~-~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~ 733 (917)
.+..++.+|.+.|++++|+|++ ++|+||+.|++|++|++..... ..........+|...|.+++|+|+++++++|+.
T Consensus 8 ~l~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~--~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~ 85 (319)
T 3frx_A 8 VLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQ--KFGVPVRSFKGHSHIVQDCTLTADGAYALSASW 85 (319)
T ss_dssp EEEEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETT--EEEEEEEEEECCSSCEEEEEECTTSSEEEEEET
T ss_pred EEEEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCc--cccccceEEeCCcccEEEEEECCCCCEEEEEeC
Confidence 3456789999999999999964 8999999999999999864311 111234456789999999999999999999999
Q ss_pred CCeEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCceEEEEEeCCC----
Q psy3053 734 AGELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCNKVFEEKLLCLSWAGEE---- 809 (917)
Q Consensus 734 dG~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~tg~~i~~~~~~~~i~~l~~s~~~---- 809 (917)
||+|++||+.+++.+..+. +|...|.+++|+|++..+++++.|++|++||++.........+...+.++.+.|..
T Consensus 86 D~~v~~wd~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~~~~~~~~~h~~~v~~~~~~~~~~~~~ 164 (319)
T 3frx_A 86 DKTLRLWDVATGETYQRFV-GHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADD 164 (319)
T ss_dssp TSEEEEEETTTTEEEEEEE-CCSSCEEEEEECTTSCEEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECCC-----
T ss_pred CCEEEEEECCCCCeeEEEc-cCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEeccCCcEEEEEEccCCCCCC
Confidence 9999999999999998888 89999999999999999999999999999999866555556677889999998743
Q ss_pred ---EEEEEeCCCeEEEEECCCCEEEEEEecCCCceEEE--eecCCEEEEEeCCCeEEEEECcCCeEEEEecCCCCCEEEE
Q psy3053 810 ---KVILGGALGMVYLVDLIQVQLLKQVRAHKDAVLSL--HFDNCTMLVGCWDSCVVIYDVECGRIVTELAGHEDAISCV 884 (917)
Q Consensus 810 ---~lv~gs~dG~I~vwdl~~~~~i~~l~~h~~~V~si--s~dg~~Lasgs~DG~I~Iwdl~tg~~l~~l~~h~~~V~sl 884 (917)
.+++++.|+.|++||+.+++....+.+|...|.++ +|++++|++|+.||.|++||+.+++.+..+..+ ..|.++
T Consensus 165 ~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~v~~~ 243 (319)
T 3frx_A 165 DSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQ-DEVFSL 243 (319)
T ss_dssp -CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECC-SCEEEE
T ss_pred CccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCC-CcEEEE
Confidence 58999999999999999999999999999999998 668999999999999999999999999988854 689999
Q ss_pred EEcCCCCEEEEEeCCCcEEEEecCcc
Q psy3053 885 AWDEKRKRLISGNLVGAPKLYATEFY 910 (917)
Q Consensus 885 afSpdg~~LaSgs~DG~V~IWdl~~~ 910 (917)
+|+|++.+|++++.++ +++|+++..
T Consensus 244 ~~sp~~~~la~~~~~~-i~v~~~~~~ 268 (319)
T 3frx_A 244 AFSPNRYWLAAATATG-IKVFSLDPQ 268 (319)
T ss_dssp EECSSSSEEEEEETTE-EEEEEETTE
T ss_pred EEcCCCCEEEEEcCCC-cEEEEeCcC
Confidence 9999999999988664 999999864
No 81
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=5e-31 Score=294.59 Aligned_cols=269 Identities=15% Similarity=0.174 Sum_probs=218.0
Q ss_pred cccccCCcccc--ceeeeccCCcceEEEEEeCCCcEEEEEecCCceEEEeccCCc--eeeeeeccccceEEEEEeCCCCE
Q psy3053 561 SNSWCDKSILE--PLHFCHSHKEAITAVAICGEGISVASVGRDAMLKIHSLKTGR--QERSAVLSSMTLSSLCILPDNCT 636 (917)
Q Consensus 561 ~~~w~~~~~l~--~~~~l~~H~~~Vtsv~fSpdg~~Lasgs~Dg~I~IWd~~t~~--~~~~~~~~~~~V~sl~~spd~~~ 636 (917)
.++|+...... ......+|.+.|++++|+|+|++|++|+.|+++++|+..++. .+..+.+|...|.+++|+|++++
T Consensus 40 i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~ 119 (345)
T 3fm0_A 40 IRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNL 119 (345)
T ss_dssp EEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSE
T ss_pred EEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCE
Confidence 36887554321 122347899999999999999999999999999999988764 56778899999999999999999
Q ss_pred EEEEecccEEEEEEeccC---eeeEEeccCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCC
Q psy3053 637 MLVGCWDSCVVIYDVECG---RIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLD 713 (917)
Q Consensus 637 Lasgs~Dg~I~Iwdl~tg---~~i~~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~ 713 (917)
|++|+.|++|++||+.++ ..+..+.+|...|.+++|+|++++|++|+.|++|++||...+. ........+|.
T Consensus 120 l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~-----~~~~~~~~~h~ 194 (345)
T 3fm0_A 120 LATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDD-----WVCCATLEGHE 194 (345)
T ss_dssp EEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEETTE-----EEEEEEECCCS
T ss_pred EEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCC-----EEEEEEecCCC
Confidence 999999999999999876 3466788999999999999999999999999999999986541 11234567899
Q ss_pred CceEEEEEeCCCCEEEEEECCCeEEEEECCCC---------------eeeEEecCCCCCCeEEEEEecCCCEEEEEeCCC
Q psy3053 714 NRIKCLAISKDNNQLAVGTEAGELIIWSLENH---------------LMTQQLSDDINASVNGVLFSEDGCRVLSCGNNC 778 (917)
Q Consensus 714 ~~V~~l~~spdg~~Lasgs~dG~I~iwDl~~~---------------~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~Dg 778 (917)
..|.+++|+|+|++|++|+.||+|++||.... +.+..+...|...|.+++|+|++..+++++.|+
T Consensus 195 ~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~ 274 (345)
T 3fm0_A 195 STVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDD 274 (345)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTS
T ss_pred CceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCC
Confidence 99999999999999999999999999996321 234455545888999999999999999999999
Q ss_pred eEEEEECCCCe--------EEEE--eecCCceEEEEEeCCC--EEEEEeCCCeEEEEECCCCEEEEEE
Q psy3053 779 MLNVYDLTTGM--------QVCN--KVFEEKLLCLSWAGEE--KVILGGALGMVYLVDLIQVQLLKQV 834 (917)
Q Consensus 779 ~I~iwDl~tg~--------~i~~--~~~~~~i~~l~~s~~~--~lv~gs~dG~I~vwdl~~~~~i~~l 834 (917)
.|++|+...+. .... ..|...|.+++|+|++ .+++|+.||.|++|++.+++.....
T Consensus 275 ~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~s~Dg~v~~W~~~~~~~~~~~ 342 (345)
T 3fm0_A 275 AIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQRPEGLHHH 342 (345)
T ss_dssp CEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEECSSSTTEEEEEETTSCEEEEEECC-------
T ss_pred eEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEeCCCceEEEEcCCCCcEEEEEecCCCCcccc
Confidence 99999986542 1111 2466789999999864 6888999999999999887765443
No 82
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=1.2e-30 Score=284.96 Aligned_cols=245 Identities=18% Similarity=0.203 Sum_probs=207.5
Q ss_pred EEeccCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCC--CCEEEEEECCC
Q psy3053 658 TELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKD--NNQLAVGTEAG 735 (917)
Q Consensus 658 ~~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd--g~~Lasgs~dG 735 (917)
..+.+|.+.|++++|+|++++|++|+.|++|++||+.... ........+|...|.+++|+++ +++|++|+.||
T Consensus 3 ~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~-----~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~ 77 (297)
T 2pm7_B 3 VIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGET-----HKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDG 77 (297)
T ss_dssp EECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSC-----BCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTT
T ss_pred eeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCC-----cEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCC
Confidence 4567899999999999999999999999999999986431 1234456789999999999864 89999999999
Q ss_pred eEEEEECCCCe--eeEEecCCCCCCeEEEEEecC--CCEEEEEeCCCeEEEEECCCCe---EEEEeecCCceEEEEEeCC
Q psy3053 736 ELIIWSLENHL--MTQQLSDDINASVNGVLFSED--GCRVLSCGNNCMLNVYDLTTGM---QVCNKVFEEKLLCLSWAGE 808 (917)
Q Consensus 736 ~I~iwDl~~~~--~~~~l~~~h~~~V~~v~fspd--g~~L~s~s~Dg~I~iwDl~tg~---~i~~~~~~~~i~~l~~s~~ 808 (917)
+|++||+.+++ .+..+. .|...|.+++|+|+ |..|++++.|+.|++||++++. ......+...+.+++|+|+
T Consensus 78 ~v~iWd~~~~~~~~~~~~~-~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~ 156 (297)
T 2pm7_B 78 KVMIWKEENGRWSQIAVHA-VHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPA 156 (297)
T ss_dssp EEEEEEBSSSCBCCCEEEC-CCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCC
T ss_pred EEEEEEcCCCceEEEEEee-cCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCC
Confidence 99999998874 444554 78899999999997 8999999999999999998763 2233456778999999985
Q ss_pred --------------CEEEEEeCCCeEEEEECCCCE----EEEEEecCCCceEEEee--c---CCEEEEEeCCCeEEEEEC
Q psy3053 809 --------------EKVILGGALGMVYLVDLIQVQ----LLKQVRAHKDAVLSLHF--D---NCTMLVGCWDSCVVIYDV 865 (917)
Q Consensus 809 --------------~~lv~gs~dG~I~vwdl~~~~----~i~~l~~h~~~V~sis~--d---g~~Lasgs~DG~I~Iwdl 865 (917)
..+++|+.||.|++||+.+++ ....+.+|...|.++++ + +.+|++|+.||+|++||+
T Consensus 157 ~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~ 236 (297)
T 2pm7_B 157 TIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQ 236 (297)
T ss_dssp C------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEE
T ss_pred cccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEe
Confidence 379999999999999998765 66788999999999954 5 378999999999999999
Q ss_pred cCCe---EEEEe--cCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecC
Q psy3053 866 ECGR---IVTEL--AGHEDAISCVAWDEKRKRLISGNLVGAPKLYATE 908 (917)
Q Consensus 866 ~tg~---~l~~l--~~h~~~V~slafSpdg~~LaSgs~DG~V~IWdl~ 908 (917)
+++. ....+ .+|...|.+++|+|+|++||+++.||.|++|+..
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~ 284 (297)
T 2pm7_B 237 DNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN 284 (297)
T ss_dssp SSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEEC
T ss_pred CCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEEC
Confidence 7643 22333 5688999999999999999999999999999986
No 83
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=6.3e-30 Score=280.22 Aligned_cols=256 Identities=18% Similarity=0.285 Sum_probs=219.9
Q ss_pred ceeeeeeccccceEEEEEeCCCCEEEEEecccEEEEEEeccCeeeEEeccCCCceeEEEecCCCCEEEEEECCCeEEEEe
Q psy3053 613 RQERSAVLSSMTLSSLCILPDNCTMLVGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWN 692 (917)
Q Consensus 613 ~~~~~~~~~~~~V~sl~~spd~~~Lasgs~Dg~I~Iwdl~tg~~i~~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWd 692 (917)
.....+.+|...|.+++|+|++++|++|+.||.|++|++.+++....+.+|...|.+++|+|++++|++|+.||.|++||
T Consensus 14 ~~~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd 93 (312)
T 4ery_A 14 ALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWD 93 (312)
T ss_dssp EEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred eeEEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEEE
Confidence 34456778999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEEEECCCeEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEE
Q psy3053 693 TGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVL 772 (917)
Q Consensus 693 l~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~dG~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~ 772 (917)
+.++ .......+|...|.+++|+|+++.+++|+.||.|++||+++++.+..+. .|...|.+++|+|+++.++
T Consensus 94 ~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~ 165 (312)
T 4ery_A 94 VSSG-------KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLP-AHSDPVSAVHFNRDGSLIV 165 (312)
T ss_dssp TTTC-------CEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEEC-CCSSCEEEEEECTTSSEEE
T ss_pred CCCC-------cEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEec-CCCCcEEEEEEcCCCCEEE
Confidence 9876 3445566899999999999999999999999999999999999888887 7889999999999999999
Q ss_pred EEeCCCeEEEEECCCCeEEEEeecCCceEEEEEeCCCEEEEEeCCCeEEEEECCCCEEEEEEecCCCceEEE--eecCCE
Q psy3053 773 SCGNNCMLNVYDLTTGMQVCNKVFEEKLLCLSWAGEEKVILGGALGMVYLVDLIQVQLLKQVRAHKDAVLSL--HFDNCT 850 (917)
Q Consensus 773 s~s~Dg~I~iwDl~tg~~i~~~~~~~~i~~l~~s~~~~lv~gs~dG~I~vwdl~~~~~i~~l~~h~~~V~si--s~dg~~ 850 (917)
+++.||.|++||+++++.+.... ..+...+.++ ++++++
T Consensus 166 ~~~~d~~i~~wd~~~~~~~~~~~---------------------------------------~~~~~~~~~~~~~~~~~~ 206 (312)
T 4ery_A 166 SSSYDGLCRIWDTASGQCLKTLI---------------------------------------DDDNPPVSFVKFSPNGKY 206 (312)
T ss_dssp EEETTSCEEEEETTTCCEEEEEC---------------------------------------CSSCCCEEEEEECTTSSE
T ss_pred EEeCCCcEEEEECCCCceeeEEe---------------------------------------ccCCCceEEEEECCCCCE
Confidence 99999999999998776543211 1233344444 668899
Q ss_pred EEEEeCCCeEEEEECcCCeEEEEecCCCCCEE---EEEEcCCCCEEEEEeCCCcEEEEecCcc-eEEEE
Q psy3053 851 MLVGCWDSCVVIYDVECGRIVTELAGHEDAIS---CVAWDEKRKRLISGNLVGAPKLYATEFY-LLYVL 915 (917)
Q Consensus 851 Lasgs~DG~I~Iwdl~tg~~l~~l~~h~~~V~---slafSpdg~~LaSgs~DG~V~IWdl~~~-ll~~L 915 (917)
+++++.||.|++||+.+++.+..+.+|...+. .....+++.+|++|+.||.|++||++.. .+..+
T Consensus 207 l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~ 275 (312)
T 4ery_A 207 ILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKL 275 (312)
T ss_dssp EEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEEEE
T ss_pred EEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhhhh
Confidence 99999999999999999999999998876533 2333468899999999999999999854 44443
No 84
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.98 E-value=2.4e-30 Score=289.00 Aligned_cols=252 Identities=16% Similarity=0.173 Sum_probs=218.0
Q ss_pred ceeeeccCCcceEEEEEeCCCcEEEEEecCCceEEEecc--CCceeeeeeccccceEEEEEeCC--CCEEEEEecccEEE
Q psy3053 572 PLHFCHSHKEAITAVAICGEGISVASVGRDAMLKIHSLK--TGRQERSAVLSSMTLSSLCILPD--NCTMLVGCWDSCVV 647 (917)
Q Consensus 572 ~~~~l~~H~~~Vtsv~fSpdg~~Lasgs~Dg~I~IWd~~--t~~~~~~~~~~~~~V~sl~~spd--~~~Lasgs~Dg~I~ 647 (917)
++..+.+|.+.|++++|+|+|++|++|+.||.|++|++. +++....+..|...|.+++|+++ +++|++|+.||.|+
T Consensus 3 ~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~ 82 (379)
T 3jrp_A 3 MVVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVL 82 (379)
T ss_dssp --CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEE
T ss_pred ccEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEE
Confidence 457789999999999999999999999999999999998 56677888899999999999987 89999999999999
Q ss_pred EEEeccCe--eeEEeccCCCceeEEEecCC--CCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeC
Q psy3053 648 IYDVECGR--IVTELAGHEDAISCVAWDEK--RKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISK 723 (917)
Q Consensus 648 Iwdl~tg~--~i~~l~~H~~~Vt~l~~spd--~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp 723 (917)
+||+.+++ .+..+.+|...|++++|+|+ +.+|++++.||.|++||+.... .........|...|.+++|+|
T Consensus 83 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~-----~~~~~~~~~~~~~v~~~~~~~ 157 (379)
T 3jrp_A 83 IWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENG-----TTSPIIIDAHAIGVNSASWAP 157 (379)
T ss_dssp EEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTS-----CCCEEEEECCTTCEEEEEECC
T ss_pred EEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCC-----ceeeEEecCCCCceEEEEEcC
Confidence 99999997 77888899999999999999 9999999999999999997752 123334567899999999999
Q ss_pred -------------CCCEEEEEECCCeEEEEECCCCe----eeEEecCCCCCCeEEEEEecC---CCEEEEEeCCCeEEEE
Q psy3053 724 -------------DNNQLAVGTEAGELIIWSLENHL----MTQQLSDDINASVNGVLFSED---GCRVLSCGNNCMLNVY 783 (917)
Q Consensus 724 -------------dg~~Lasgs~dG~I~iwDl~~~~----~~~~l~~~h~~~V~~v~fspd---g~~L~s~s~Dg~I~iw 783 (917)
++..+++|+.||.|++||++++. ....+. .|...|.+++|+|+ +.+|++++.||.|++|
T Consensus 158 ~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iw 236 (379)
T 3jrp_A 158 ATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLE-GHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIW 236 (379)
T ss_dssp CC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEEC-CCSSCEEEEEECCCCSSSEEEEEEETTSCEEEE
T ss_pred ccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEe-cccCcEeEEEECCCCCCCCeEEEEeCCCEEEEE
Confidence 69999999999999999998764 334454 78999999999999 8999999999999999
Q ss_pred ECCCCe---EEEE---eecCCceEEEEEeCCCE-EEEEeCCCeEEEEECCCCE
Q psy3053 784 DLTTGM---QVCN---KVFEEKLLCLSWAGEEK-VILGGALGMVYLVDLIQVQ 829 (917)
Q Consensus 784 Dl~tg~---~i~~---~~~~~~i~~l~~s~~~~-lv~gs~dG~I~vwdl~~~~ 829 (917)
|+.++. .... ..+...+.+++|++++. +++++.||.|++|++....
T Consensus 237 d~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~ 289 (379)
T 3jrp_A 237 TQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEG 289 (379)
T ss_dssp EESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEETT
T ss_pred eCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCCCC
Confidence 998863 1222 22667899999998765 7788999999999997543
No 85
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=99.98 E-value=4.5e-30 Score=292.17 Aligned_cols=243 Identities=17% Similarity=0.233 Sum_probs=201.4
Q ss_pred cceEEEEEeCCCcEEEEEecCCceEEEeccCCceeeeeeccccceEEEEEeCCCCEEEEEecccEEEEEEeccCeeeEEe
Q psy3053 581 EAITAVAICGEGISVASVGRDAMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTMLVGCWDSCVVIYDVECGRIVTEL 660 (917)
Q Consensus 581 ~~Vtsv~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~~~~~~~~V~sl~~spd~~~Lasgs~Dg~I~Iwdl~tg~~i~~l 660 (917)
..|++++|+|+|++|++|+.||+|++||+.+++.+..+.+|...|.+++|+|+++.|++|+.|++|++||+.+++....+
T Consensus 124 ~~v~~v~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~ 203 (393)
T 1erj_A 124 LYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTL 203 (393)
T ss_dssp CBEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE
T ss_pred eeEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEE
Confidence 35999999999999999999999999999999999999999999999999999999999999999999999999988777
Q ss_pred ccCCCceeEEEecC-CCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEEEECCCeEEE
Q psy3053 661 AGHEDAISCVAWDE-KRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGELII 739 (917)
Q Consensus 661 ~~H~~~Vt~l~~sp-d~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~dG~I~i 739 (917)
. +...+.+++|+| ++++|++|+.||+|++||+.++..............+|...|.+++|+|+++.+++|+.||.|++
T Consensus 204 ~-~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~ 282 (393)
T 1erj_A 204 S-IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKL 282 (393)
T ss_dssp E-CSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred E-cCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEE
Confidence 6 567899999999 89999999999999999998762111100011112578899999999999999999999999999
Q ss_pred EECCCCe------------eeEEecCCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeEEEEee-cCCceEEEEEe
Q psy3053 740 WSLENHL------------MTQQLSDDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCNKV-FEEKLLCLSWA 806 (917)
Q Consensus 740 wDl~~~~------------~~~~l~~~h~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~tg~~i~~~~-~~~~i~~l~~s 806 (917)
||+++.. ....+. +|...|.+++|+|++.+|++++.|+.|++||..+++.+..+. |...+.+++++
T Consensus 283 wd~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~~v~~v~~~ 361 (393)
T 1erj_A 283 WNLQNANNKSDSKTPNSGTCEVTYI-GHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVA 361 (393)
T ss_dssp EEC---------------CEEEEEE-CCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEC
T ss_pred EECCCCCCcccccCCCCCcceEEEe-cccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCCCCCEEEEEec
Confidence 9997642 334444 788999999999999999999999999999999998876654 66778898887
Q ss_pred CC-------CEEEEEeCCCeEEEEEC
Q psy3053 807 GE-------EKVILGGALGMVYLVDL 825 (917)
Q Consensus 807 ~~-------~~lv~gs~dG~I~vwdl 825 (917)
+. ..+++|+.||.|++|++
T Consensus 362 ~~~~~~p~~~~l~sgs~Dg~i~iW~~ 387 (393)
T 1erj_A 362 NGSSLGPEYNVFATGSGDCKARIWKY 387 (393)
T ss_dssp SSCTTCTTCEEEEEEETTSEEEEEEE
T ss_pred CCcCcCCCCCEEEEECCCCcEEECcc
Confidence 53 24555556666666654
No 86
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=99.98 E-value=5.2e-31 Score=290.67 Aligned_cols=248 Identities=16% Similarity=0.183 Sum_probs=204.0
Q ss_pred eeeccCCcceEEEEEeCCCcEEEEEecCCceEEEeccCCc--eeeeeeccccceEEEEEeC--CCCEEEEEecccEEEEE
Q psy3053 574 HFCHSHKEAITAVAICGEGISVASVGRDAMLKIHSLKTGR--QERSAVLSSMTLSSLCILP--DNCTMLVGCWDSCVVIY 649 (917)
Q Consensus 574 ~~l~~H~~~Vtsv~fSpdg~~Lasgs~Dg~I~IWd~~t~~--~~~~~~~~~~~V~sl~~sp--d~~~Lasgs~Dg~I~Iw 649 (917)
..+.+|.+.|++++|+|+|++|++|+.|++|++||+.++. .+..+.+|..+|.+++|++ ++++|++|+.|++|++|
T Consensus 7 ~~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iW 86 (316)
T 3bg1_A 7 TVDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIW 86 (316)
T ss_dssp -------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEE
T ss_pred eecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEE
Confidence 3467999999999999999999999999999999998775 4567889999999999986 48999999999999999
Q ss_pred EeccC--eeeEEeccCCCceeEEEecCC--CCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCC-
Q psy3053 650 DVECG--RIVTELAGHEDAISCVAWDEK--RKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKD- 724 (917)
Q Consensus 650 dl~tg--~~i~~l~~H~~~Vt~l~~spd--~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd- 724 (917)
|+.++ +....+.+|.+.|++++|+|+ +.+|++|+.|++|++||+..... .........|...|.+++|+|+
T Consensus 87 d~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~----~~~~~~~~~h~~~v~~~~~~~~~ 162 (316)
T 3bg1_A 87 REENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQ----WEVKKINNAHTIGCNAVSWAPAV 162 (316)
T ss_dssp CCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSC----EEECCBTTSSSSCBCCCEECCCC
T ss_pred ECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCC----cceeeeeccccCCcceEEEcccc
Confidence 99987 456778899999999999997 78999999999999999876410 0011233568889999999997
Q ss_pred ----------------CCEEEEEECCCeEEEEECCCC---eeeEEecCCCCCCeEEEEEecCC----CEEEEEeCCCeEE
Q psy3053 725 ----------------NNQLAVGTEAGELIIWSLENH---LMTQQLSDDINASVNGVLFSEDG----CRVLSCGNNCMLN 781 (917)
Q Consensus 725 ----------------g~~Lasgs~dG~I~iwDl~~~---~~~~~l~~~h~~~V~~v~fspdg----~~L~s~s~Dg~I~ 781 (917)
+.+|++|+.||.|++||++.. +....+. +|...|.+++|+|++ ..|++++.|++|+
T Consensus 163 ~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~-~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~ 241 (316)
T 3bg1_A 163 VPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLE-AHSDWVRDVAWAPSIGLPTSTIASCSQDGRVF 241 (316)
T ss_dssp CC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCB-CCSSCEEEEECCCCSSCSCCEEEEEETTCEEE
T ss_pred CCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecc-cCCCceEEEEecCCCCCCCceEEEEcCCCeEE
Confidence 478999999999999999765 3555565 899999999999986 8899999999999
Q ss_pred EEECCCC---e--EEEEeecCCceEEEEEeCCC-EEEEEeCCCeEEEEECC
Q psy3053 782 VYDLTTG---M--QVCNKVFEEKLLCLSWAGEE-KVILGGALGMVYLVDLI 826 (917)
Q Consensus 782 iwDl~tg---~--~i~~~~~~~~i~~l~~s~~~-~lv~gs~dG~I~vwdl~ 826 (917)
+||+.+. . ......+...+.+++|+|++ .+++++.||.|++|+..
T Consensus 242 iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~~ 292 (316)
T 3bg1_A 242 IWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKES 292 (316)
T ss_dssp EEECSSTTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEESSSCEEEEEEC
T ss_pred EEEccCccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEEC
Confidence 9998762 1 11223467889999999876 47789999999999975
No 87
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=99.97 E-value=9.3e-31 Score=288.66 Aligned_cols=264 Identities=17% Similarity=0.192 Sum_probs=205.0
Q ss_pred eeeccccceEEEEEeCCCCEEEEEecccEEEEEEeccCe--eeEEeccCCCceeEEEecC--CCCEEEEEECCCeEEEEe
Q psy3053 617 SAVLSSMTLSSLCILPDNCTMLVGCWDSCVVIYDVECGR--IVTELAGHEDAISCVAWDE--KRKRLISGSWDCTVRVWN 692 (917)
Q Consensus 617 ~~~~~~~~V~sl~~spd~~~Lasgs~Dg~I~Iwdl~tg~--~i~~l~~H~~~Vt~l~~sp--d~~~L~Sgs~DgtI~vWd 692 (917)
.+.+|...|.+++|+|++++||+|+.|++|++||+.+++ .+..+.+|.+.|++++|++ ++++|++|+.|++|++||
T Consensus 8 ~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd 87 (316)
T 3bg1_A 8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWR 87 (316)
T ss_dssp ------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEEC
T ss_pred ecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEE
Confidence 345799999999999999999999999999999999875 4678899999999999986 489999999999999999
Q ss_pred CCCCCCCccCCcceeeeccCCCceEEEEEeCC--CCEEEEEECCCeEEEEECCCCeee--EEecCCCCCCeEEEEEecCC
Q psy3053 693 TGASWSHMKPSKSLVSQLDLDNRIKCLAISKD--NNQLAVGTEAGELIIWSLENHLMT--QQLSDDINASVNGVLFSEDG 768 (917)
Q Consensus 693 l~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd--g~~Lasgs~dG~I~iwDl~~~~~~--~~l~~~h~~~V~~v~fspdg 768 (917)
+.++. ........+|...|.+++|+|+ +.++++|+.||.|++||++.+... ......|...|.+++|+|++
T Consensus 88 ~~~~~-----~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~ 162 (316)
T 3bg1_A 88 EENGT-----WEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAV 162 (316)
T ss_dssp CSSSC-----CCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCC
T ss_pred CCCCc-----ceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEcccc
Confidence 87641 1223345679999999999998 789999999999999999876322 22233788899999999975
Q ss_pred CEEEEEeCCCeEEEEECCCCeEEEEeecCCceEEEEEeCCCEEEEEeCCCeEEEEECCCC---EEEEEEecCCCceEEEe
Q psy3053 769 CRVLSCGNNCMLNVYDLTTGMQVCNKVFEEKLLCLSWAGEEKVILGGALGMVYLVDLIQV---QLLKQVRAHKDAVLSLH 845 (917)
Q Consensus 769 ~~L~s~s~Dg~I~iwDl~tg~~i~~~~~~~~i~~l~~s~~~~lv~gs~dG~I~vwdl~~~---~~i~~l~~h~~~V~sis 845 (917)
.. +.+ .+...+.. ......+++|+.|+.|++||+... +.+..+.+|...|.++.
T Consensus 163 ~~-------~~~--~~~~~~~~--------------~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~ 219 (316)
T 3bg1_A 163 VP-------GSL--IDHPSGQK--------------PNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVA 219 (316)
T ss_dssp CC---------------CCSCC--------------CCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEE
T ss_pred CC-------ccc--cccccccC--------------ccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEE
Confidence 21 000 00001100 001236888888999999998754 56777889999999994
Q ss_pred --ecC----CEEEEEeCCCeEEEEECcCC---e-EEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecC
Q psy3053 846 --FDN----CTMLVGCWDSCVVIYDVECG---R-IVTELAGHEDAISCVAWDEKRKRLISGNLVGAPKLYATE 908 (917)
Q Consensus 846 --~dg----~~Lasgs~DG~I~Iwdl~tg---~-~l~~l~~h~~~V~slafSpdg~~LaSgs~DG~V~IWdl~ 908 (917)
|++ .+|++|+.||+|++|++.+. . ....+.+|.+.|.+++|+|++++||+|+.||+|++|+..
T Consensus 220 ~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~~ 292 (316)
T 3bg1_A 220 WAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKES 292 (316)
T ss_dssp CCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEESSSCEEEEEEC
T ss_pred ecCCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEEC
Confidence 454 78999999999999998762 1 223456788999999999999999999999999999976
No 88
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.97 E-value=1.2e-29 Score=281.69 Aligned_cols=286 Identities=13% Similarity=0.200 Sum_probs=236.2
Q ss_pred ccccceeeeccCCcceEEEEEeCC---CcEEEEEecCCceEEEeccC-Ccee-eeeeccccceEEEEEeCCCCEEEEEec
Q psy3053 568 SILEPLHFCHSHKEAITAVAICGE---GISVASVGRDAMLKIHSLKT-GRQE-RSAVLSSMTLSSLCILPDNCTMLVGCW 642 (917)
Q Consensus 568 ~~l~~~~~l~~H~~~Vtsv~fSpd---g~~Lasgs~Dg~I~IWd~~t-~~~~-~~~~~~~~~V~sl~~spd~~~Lasgs~ 642 (917)
...+++..+.+|.+.|++++|+|+ |++|++|+.||.|++||+.+ +... ..+..|...|.+++|+|++++|++|+.
T Consensus 27 ~~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~ 106 (368)
T 3mmy_A 27 NPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASC 106 (368)
T ss_dssp CTTCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEET
T ss_pred CCcceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcC
Confidence 445677888999999999999999 69999999999999999987 5554 678889999999999999999999999
Q ss_pred ccEEEEEEeccCeeeEEeccCCCceeEEEe--cCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEE
Q psy3053 643 DSCVVIYDVECGRIVTELAGHEDAISCVAW--DEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLA 720 (917)
Q Consensus 643 Dg~I~Iwdl~tg~~i~~l~~H~~~Vt~l~~--spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~ 720 (917)
||.|++||+.+++.+. +.+|...|++++| ++++++|++++.||.|++||+.++. .. ........+.++.
T Consensus 107 dg~v~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~-------~~-~~~~~~~~~~~~~ 177 (368)
T 3mmy_A 107 DKTAKMWDLSSNQAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSN-------PM-MVLQLPERCYCAD 177 (368)
T ss_dssp TSEEEEEETTTTEEEE-EEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSS-------CS-EEEECSSCEEEEE
T ss_pred CCcEEEEEcCCCCcee-eccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCc-------EE-EEEecCCCceEEE
Confidence 9999999999998776 5679999999999 8999999999999999999998762 22 2223344666666
Q ss_pred EeCCCCEEEEEECCCeEEEEECCCCeeeE-EecCCCCCCeEEEEEecCCCE----EEEEeCCCeEEEEECCCCe---EEE
Q psy3053 721 ISKDNNQLAVGTEAGELIIWSLENHLMTQ-QLSDDINASVNGVLFSEDGCR----VLSCGNNCMLNVYDLTTGM---QVC 792 (917)
Q Consensus 721 ~spdg~~Lasgs~dG~I~iwDl~~~~~~~-~l~~~h~~~V~~v~fspdg~~----L~s~s~Dg~I~iwDl~tg~---~i~ 792 (917)
+. +..+++++.++.+.+|+++...... .....+...+.++++.+++.. +++++.||.|++||+.... ...
T Consensus 178 ~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~ 255 (368)
T 3mmy_A 178 VI--YPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNF 255 (368)
T ss_dssp EE--TTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSE
T ss_pred ec--CCeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccce
Confidence 66 4588999999999999998765433 333345667778888776655 9999999999999998762 223
Q ss_pred EeecCC-------------ceEEEEEeCCC-EEEEEeCCCeEEEEECCCCEEEEEEecCCCceEEE--eecCCEEEEEeC
Q psy3053 793 NKVFEE-------------KLLCLSWAGEE-KVILGGALGMVYLVDLIQVQLLKQVRAHKDAVLSL--HFDNCTMLVGCW 856 (917)
Q Consensus 793 ~~~~~~-------------~i~~l~~s~~~-~lv~gs~dG~I~vwdl~~~~~i~~l~~h~~~V~si--s~dg~~Lasgs~ 856 (917)
...... .+.+++|++++ .+++|+.||.|++||+.+++.+..+.+|...|.++ ++++++|++|+.
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~s~ 335 (368)
T 3mmy_A 256 TFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISACCFNHNGNIFAYASS 335 (368)
T ss_dssp EEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSCEEEEEECTTSSCEEEEEC
T ss_pred eeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEecCCCCCceEEEECCCCCeEEEEec
Confidence 322221 69999999876 68899999999999999999999999999999998 568999999999
Q ss_pred CCeEEEEE
Q psy3053 857 DSCVVIYD 864 (917)
Q Consensus 857 DG~I~Iwd 864 (917)
|+..+.|+
T Consensus 336 d~~~~~~~ 343 (368)
T 3mmy_A 336 YDWSKGHE 343 (368)
T ss_dssp CCSTTCGG
T ss_pred cccccccc
Confidence 87554444
No 89
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.97 E-value=1.2e-28 Score=282.19 Aligned_cols=318 Identities=12% Similarity=0.069 Sum_probs=257.4
Q ss_pred CcceEEEE---EeCCCcEEEEE--------------ecCCceEEEeccC--C--ceeeeeeccccceEEEEEeCCCCEEE
Q psy3053 580 KEAITAVA---ICGEGISVASV--------------GRDAMLKIHSLKT--G--RQERSAVLSSMTLSSLCILPDNCTML 638 (917)
Q Consensus 580 ~~~Vtsv~---fSpdg~~Lasg--------------s~Dg~I~IWd~~t--~--~~~~~~~~~~~~V~sl~~spd~~~La 638 (917)
...+..++ |+|++..++.. +.++.+.+|.++. + +.+..+..+. .+.+++|+|++.+++
T Consensus 60 ~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~~ 138 (433)
T 3bws_A 60 NIALVEMAIPVYKDEKEIELKLSSPGFQNSSYRIRKPEELNEKLIALDKEGITHRFISRFKTGF-QPKSVRFIDNTRLAI 138 (433)
T ss_dssp TEEEEEEEEECCCTTCCEEEEEECTTBCCEEEEESSGGGGTTCEEECCBTTCSEEEEEEEECSS-CBCCCEESSSSEEEE
T ss_pred CCccEEEEEeeccCCCcEEEEEEccccCcceeeecccCCCceEEEEECCCCCcceEEEEEcCCC-CceEEEEeCCCeEEE
Confidence 34556666 77766655433 3344345555433 4 3444444443 456899999888888
Q ss_pred EEecccEEEEEEeccCeeeE-----EeccCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCC
Q psy3053 639 VGCWDSCVVIYDVECGRIVT-----ELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLD 713 (917)
Q Consensus 639 sgs~Dg~I~Iwdl~tg~~i~-----~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~ 713 (917)
+++.++.|++||+.+++... .+.+|.+.|.+++|++++..+++++.|+.|++||+.++ ........|.
T Consensus 139 ~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~-------~~~~~~~~~~ 211 (433)
T 3bws_A 139 PLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTL-------AYKATVDLTG 211 (433)
T ss_dssp EBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTC-------CEEEEEECSS
T ss_pred EeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCc-------eEEEEEcCCC
Confidence 88889999999999998877 45579999999999999999999999999999999765 2333444678
Q ss_pred CceEEEEEeCCCCEEEEEE-CCCeEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEEe--------CCCeEEEEE
Q psy3053 714 NRIKCLAISKDNNQLAVGT-EAGELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCG--------NNCMLNVYD 784 (917)
Q Consensus 714 ~~V~~l~~spdg~~Lasgs-~dG~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s--------~Dg~I~iwD 784 (917)
..+.+++|+|+++.+++++ .+|.|.+||+++++.+..+. ....+.+++|+|+|+.+++++ .|+.|++||
T Consensus 212 ~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~--~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d 289 (433)
T 3bws_A 212 KWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTD--KIGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYS 289 (433)
T ss_dssp SSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECC--CCSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEE
T ss_pred CCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEec--CCCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEE
Confidence 8999999999999885554 79999999999999888776 345699999999999999888 588999999
Q ss_pred CCCCeEEEEeecCCceEEEEEeCCC-E-EEEEeCCCeEEEEECCCCEEEEEEecCCCceEEE--eecCCEEEEEeC----
Q psy3053 785 LTTGMQVCNKVFEEKLLCLSWAGEE-K-VILGGALGMVYLVDLIQVQLLKQVRAHKDAVLSL--HFDNCTMLVGCW---- 856 (917)
Q Consensus 785 l~tg~~i~~~~~~~~i~~l~~s~~~-~-lv~gs~dG~I~vwdl~~~~~i~~l~~h~~~V~si--s~dg~~Lasgs~---- 856 (917)
+.+++......+...+.+++|++++ . +++++.++.|++||+.+++.+..+. +...+.++ +++++.+++++.
T Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~ 368 (433)
T 3bws_A 290 MDKEKLIDTIGPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIP-VFDKPNTIALSPDGKYLYVSCRGPNH 368 (433)
T ss_dssp TTTTEEEEEEEEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEE-CSSSEEEEEECTTSSEEEEEECCCCC
T ss_pred CCCCcEEeeccCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEec-CCCCCCeEEEcCCCCEEEEEecCCCc
Confidence 9999988887777789999999877 3 4566889999999999999888876 56667777 668998888876
Q ss_pred -----------CCeEEEEECcCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeC-CCcEEEEecCc
Q psy3053 857 -----------DSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGNL-VGAPKLYATEF 909 (917)
Q Consensus 857 -----------DG~I~Iwdl~tg~~l~~l~~h~~~V~slafSpdg~~LaSgs~-DG~V~IWdl~~ 909 (917)
||.|++||+.+++.+..+.. ...+.+++|+|+|++|++++. ||.|++|++++
T Consensus 369 ~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~~ 432 (433)
T 3bws_A 369 PTEGYLKKGLVLGKVYVIDTTTDTVKEFWEA-GNQPTGLDVSPDNRYLVISDFLDHQIRVYRRDG 432 (433)
T ss_dssp TTTCTTSCCSSCCEEEEEETTTTEEEEEEEC-SSSEEEEEECTTSCEEEEEETTTTEEEEEEETT
T ss_pred cccccccccccceEEEEEECCCCcEEEEecC-CCCCceEEEcCCCCEEEEEECCCCeEEEEEecC
Confidence 57999999999999988876 457999999999999998875 99999999975
No 90
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.97 E-value=9.7e-30 Score=284.12 Aligned_cols=255 Identities=14% Similarity=0.195 Sum_probs=209.4
Q ss_pred CceeeeeeccccceEEEEEeCCCCEEEEEecccEEEEEEec--cCeeeEEeccCCCceeEEEecCC--CCEEEEEECCCe
Q psy3053 612 GRQERSAVLSSMTLSSLCILPDNCTMLVGCWDSCVVIYDVE--CGRIVTELAGHEDAISCVAWDEK--RKRLISGSWDCT 687 (917)
Q Consensus 612 ~~~~~~~~~~~~~V~sl~~spd~~~Lasgs~Dg~I~Iwdl~--tg~~i~~l~~H~~~Vt~l~~spd--~~~L~Sgs~Dgt 687 (917)
|+.+..+.+|...|.+++|+|++++|++|+.||.|++|++. +++.+..+.+|.+.|++++|+++ +++|++|+.||.
T Consensus 1 G~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~ 80 (379)
T 3jrp_A 1 GSMVVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGK 80 (379)
T ss_dssp ----CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSC
T ss_pred CCccEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCE
Confidence 34567788999999999999999999999999999999998 66778889999999999999977 899999999999
Q ss_pred EEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCC--CCEEEEEECCCeEEEEECCCCe--eeEEecCCCCCCeEEEE
Q psy3053 688 VRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKD--NNQLAVGTEAGELIIWSLENHL--MTQQLSDDINASVNGVL 763 (917)
Q Consensus 688 I~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd--g~~Lasgs~dG~I~iwDl~~~~--~~~~l~~~h~~~V~~v~ 763 (917)
|++||+.++. .........|...|.+++|+|+ +..+++|+.||.|++||+.++. ....+. .|...|.+++
T Consensus 81 v~iwd~~~~~-----~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~-~~~~~v~~~~ 154 (379)
T 3jrp_A 81 VLIWKEENGR-----WSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIID-AHAIGVNSAS 154 (379)
T ss_dssp EEEEEEETTE-----EEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEE-CCTTCEEEEE
T ss_pred EEEEEcCCCc-----eeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEec-CCCCceEEEE
Confidence 9999987651 1134445678999999999999 9999999999999999998873 233343 7889999999
Q ss_pred Eec-------------CCCEEEEEeCCCeEEEEECCCCeEEEEeecCCceEEEEEeCCCEEEEEeCCCeEEEEECCCCEE
Q psy3053 764 FSE-------------DGCRVLSCGNNCMLNVYDLTTGMQVCNKVFEEKLLCLSWAGEEKVILGGALGMVYLVDLIQVQL 830 (917)
Q Consensus 764 fsp-------------dg~~L~s~s~Dg~I~iwDl~tg~~i~~~~~~~~i~~l~~s~~~~lv~gs~dG~I~vwdl~~~~~ 830 (917)
|+| ++..+++++.||.|++||++++... ...
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~------------------------------------~~~ 198 (379)
T 3jrp_A 155 WAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQT------------------------------------YVL 198 (379)
T ss_dssp ECCCC----------CTTCEEEEEETTSCEEEEEEETTTTE------------------------------------EEE
T ss_pred EcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcc------------------------------------eee
Confidence 999 5777777777777777776543211 123
Q ss_pred EEEEecCCCceEEE--eec---CCEEEEEeCCCeEEEEECcCCe---EEEE--ecCCCCCEEEEEEcCCCCEEEEEeCCC
Q psy3053 831 LKQVRAHKDAVLSL--HFD---NCTMLVGCWDSCVVIYDVECGR---IVTE--LAGHEDAISCVAWDEKRKRLISGNLVG 900 (917)
Q Consensus 831 i~~l~~h~~~V~si--s~d---g~~Lasgs~DG~I~Iwdl~tg~---~l~~--l~~h~~~V~slafSpdg~~LaSgs~DG 900 (917)
...+.+|...|.++ +|+ +++|++++.||.|++||+.++. .... ...|...|++++|+|+|++|++++.||
T Consensus 199 ~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg 278 (379)
T 3jrp_A 199 ESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDN 278 (379)
T ss_dssp EEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSS
T ss_pred EEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCC
Confidence 45567788888888 456 7899999999999999998864 2223 334889999999999999999999999
Q ss_pred cEEEEecC
Q psy3053 901 APKLYATE 908 (917)
Q Consensus 901 ~V~IWdl~ 908 (917)
.|++|+++
T Consensus 279 ~i~iw~~~ 286 (379)
T 3jrp_A 279 KVTLWKEN 286 (379)
T ss_dssp SEEEEEEE
T ss_pred cEEEEeCC
Confidence 99999997
No 91
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.97 E-value=7.2e-31 Score=309.83 Aligned_cols=294 Identities=8% Similarity=0.001 Sum_probs=222.4
Q ss_pred ccccCCcccc---ceeeeccCCcceEEEEEeCC------CcEEEEEecCCceEEEeccCCce-----------eeeeecc
Q psy3053 562 NSWCDKSILE---PLHFCHSHKEAITAVAICGE------GISVASVGRDAMLKIHSLKTGRQ-----------ERSAVLS 621 (917)
Q Consensus 562 ~~w~~~~~l~---~~~~l~~H~~~Vtsv~fSpd------g~~Lasgs~Dg~I~IWd~~t~~~-----------~~~~~~~ 621 (917)
.+|+...... ....+.+|.+.|.+++|+|+ +.+||+++.||+|++||+.++.. ...+.+|
T Consensus 186 ~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h 265 (524)
T 2j04_B 186 QIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLA 265 (524)
T ss_dssp EEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCT
T ss_pred EEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcC
Confidence 5787543211 12446788999999999997 57999999999999999987642 2356678
Q ss_pred ccceEEEEEeCCCCEEEEEecccEEEEEEeccCe-eeEEeccCCCceeEE--EecCCC-CEEEEEECCCeEEEEeCCCCC
Q psy3053 622 SMTLSSLCILPDNCTMLVGCWDSCVVIYDVECGR-IVTELAGHEDAISCV--AWDEKR-KRLISGSWDCTVRVWNTGASW 697 (917)
Q Consensus 622 ~~~V~sl~~spd~~~Lasgs~Dg~I~Iwdl~tg~-~i~~l~~H~~~Vt~l--~~spd~-~~L~Sgs~DgtI~vWdl~~~~ 697 (917)
...|.+++|++++ .|++|+.||+|++||+.++. ....+.+|.+.|+++ +|++++ .+|+|||.|++|++||++++.
T Consensus 266 ~~~v~sv~~s~~~-~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~ 344 (524)
T 2j04_B 266 DSLITTFDFLSPT-TVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIA 344 (524)
T ss_dssp TTCEEEEEESSSS-EEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHH
T ss_pred CCCEEEEEecCCC-eEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCC
Confidence 8999999999864 89999999999999999874 456688999999999 578887 899999999999999987641
Q ss_pred CCccCCcceeeeccCC--CceEEEEEeCCCCEEEEEECCCeEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEEe
Q psy3053 698 SHMKPSKSLVSQLDLD--NRIKCLAISKDNNQLAVGTEAGELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCG 775 (917)
Q Consensus 698 ~~~~~~~~~~~~~~h~--~~V~~l~~spdg~~Lasgs~dG~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s 775 (917)
......+|. ..|.+++|+|++..+++++.|++|++||++++..+..+. +|.+.|.+++|+|+|+.|++|+
T Consensus 345 -------~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~-gH~~~V~sva~Sp~g~~l~Sgs 416 (524)
T 2j04_B 345 -------TTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLV-SRETTITAIGVSRLHPMVLAGS 416 (524)
T ss_dssp -------HHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEE-ECSSCEEEEECCSSCCBCEEEE
T ss_pred -------cccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccceeee-cCCCceEEEEeCCCCCeEEEEE
Confidence 122222333 358899999999999999999999999999998877777 7999999999999999999999
Q ss_pred CCCeEEEEECCCCeEEEEe------ecCCceEEEEEeCCCEEEEEeCCCeEEEEECC-CCEEEEEEecCCCceEEEee--
Q psy3053 776 NNCMLNVYDLTTGMQVCNK------VFEEKLLCLSWAGEEKVILGGALGMVYLVDLI-QVQLLKQVRAHKDAVLSLHF-- 846 (917)
Q Consensus 776 ~Dg~I~iwDl~tg~~i~~~------~~~~~i~~l~~s~~~~lv~gs~dG~I~vwdl~-~~~~i~~l~~h~~~V~sis~-- 846 (917)
.||+|++||+..+. .... .....+.++++++++..+....+ ..+|+.. ++..+..+.+|...|.++++
T Consensus 417 ~Dgtv~lwd~~~~~-~~~~~~~~~~~~~~~v~~v~~sp~g~~~~~~~~--~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp 493 (524)
T 2j04_B 417 ADGSLIITNAARRL-LHGIKNSSATQKSLRLWKWDYSIKDDKYRIDSS--YEVYPLTVNDVSKAKIDAHGINITCTKWNE 493 (524)
T ss_dssp TTTEEECCBSCSST-TTCC------CCCCEEEECBCCSSSCEEEECCC--CCCCC-------------CCCSCCCEEECC
T ss_pred CCCEEEEEechHhh-ccccccCccceeeeEEEEeccCCCCCeEEccCC--ceecccccCCcceeeecCCCceEEEEECCC
Confidence 99999999986541 1110 01124567888888765544332 2333332 46677888999999999954
Q ss_pred cC---CEEEEEeCCCeEEEEECcC
Q psy3053 847 DN---CTMLVGCWDSCVVIYDVEC 867 (917)
Q Consensus 847 dg---~~Lasgs~DG~I~Iwdl~t 867 (917)
++ ..+|+|+.||.|+||+++-
T Consensus 494 ~~~~~~~lAsg~~~g~vrlw~l~~ 517 (524)
T 2j04_B 494 TSAGGKCYAFSNSAGLLTLEYLSL 517 (524)
T ss_dssp STTTTTEEEEECTTSEEEEEECSC
T ss_pred CCCccHHHHhhccCceEEEEEccc
Confidence 53 4899999999999999863
No 92
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.97 E-value=5e-30 Score=291.90 Aligned_cols=284 Identities=13% Similarity=0.176 Sum_probs=229.6
Q ss_pred eEEEEEeCCCcEE-EEEecCCceEEEeccCC----ceeeeeeccccceEEEEEeC-CCCEEEEEecccEEEEEEeccC--
Q psy3053 583 ITAVAICGEGISV-ASVGRDAMLKIHSLKTG----RQERSAVLSSMTLSSLCILP-DNCTMLVGCWDSCVVIYDVECG-- 654 (917)
Q Consensus 583 Vtsv~fSpdg~~L-asgs~Dg~I~IWd~~t~----~~~~~~~~~~~~V~sl~~sp-d~~~Lasgs~Dg~I~Iwdl~tg-- 654 (917)
...++++|+...+ ++++.||.|++|++... .....+.+|...|.+++|+| ++++|++|+.||.|++||+.++
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~ 116 (402)
T 2aq5_A 37 SGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGL 116 (402)
T ss_dssp SCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCC
T ss_pred CCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCC
Confidence 3457888887544 45788999999998654 23456778999999999999 8999999999999999999988
Q ss_pred -----eeeEEeccCCCceeEEEecCCC-CEEEEEECCCeEEEEeCCCCCCCccCCcceeee--ccCCCceEEEEEeCCCC
Q psy3053 655 -----RIVTELAGHEDAISCVAWDEKR-KRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQ--LDLDNRIKCLAISKDNN 726 (917)
Q Consensus 655 -----~~i~~l~~H~~~Vt~l~~spd~-~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~--~~h~~~V~~l~~spdg~ 726 (917)
+.+..+.+|.+.|++++|+|++ ++|++|+.||+|++||+.++ ...... ..|...|.+++|+|+++
T Consensus 117 ~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~-------~~~~~~~~~~~~~~v~~~~~~~~~~ 189 (402)
T 2aq5_A 117 VLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTG-------AAVLTLGPDVHPDTIYSVDWSRDGA 189 (402)
T ss_dssp SSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTT-------EEEEEECTTTCCSCEEEEEECTTSS
T ss_pred ccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCC-------CccEEEecCCCCCceEEEEECCCCC
Confidence 5678899999999999999998 69999999999999999876 233344 57899999999999999
Q ss_pred EEEEEECCCeEEEEECCCCeeeEEecCCCCCC-eEEEEEecCCCEEEEE---eCCCeEEEEECCCCeE-EEEeecCCceE
Q psy3053 727 QLAVGTEAGELIIWSLENHLMTQQLSDDINAS-VNGVLFSEDGCRVLSC---GNNCMLNVYDLTTGMQ-VCNKVFEEKLL 801 (917)
Q Consensus 727 ~Lasgs~dG~I~iwDl~~~~~~~~l~~~h~~~-V~~v~fspdg~~L~s~---s~Dg~I~iwDl~tg~~-i~~~~~~~~i~ 801 (917)
.+++|+.||.|++||+++++.+..+...|.+. +.+++|+|++.+++++ +.|+.|++||++++.. ....
T Consensus 190 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~------- 262 (402)
T 2aq5_A 190 LICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQ------- 262 (402)
T ss_dssp CEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEE-------
T ss_pred EEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEE-------
Confidence 99999999999999999999998883366655 8999999999999998 7899999999876532 1000
Q ss_pred EEEEeCCCEEEEEeCCCeEEEEECCCCEEEEEEecCCCceEEE--eecCCEEEE-EeCCCeEEEEECcCCeE-EEEecC-
Q psy3053 802 CLSWAGEEKVILGGALGMVYLVDLIQVQLLKQVRAHKDAVLSL--HFDNCTMLV-GCWDSCVVIYDVECGRI-VTELAG- 876 (917)
Q Consensus 802 ~l~~s~~~~lv~gs~dG~I~vwdl~~~~~i~~l~~h~~~V~si--s~dg~~Las-gs~DG~I~Iwdl~tg~~-l~~l~~- 876 (917)
...|...+.++ +++++.+++ |+.||.|++||+.+++. +..+..
T Consensus 263 --------------------------------~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~ 310 (402)
T 2aq5_A 263 --------------------------------ELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMF 310 (402)
T ss_dssp --------------------------------ECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEE
T ss_pred --------------------------------eccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeeccc
Confidence 01234445555 667888764 55799999999988873 444433
Q ss_pred -CCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcceEEE
Q psy3053 877 -HEDAISCVAWDEKRKRLISGNLVGAPKLYATEFYLLYV 914 (917)
Q Consensus 877 -h~~~V~slafSpdg~~LaSgs~DG~V~IWdl~~~ll~~ 914 (917)
|..+|.+++|+|++.++++ .++.+++|++....+..
T Consensus 311 ~~~~~v~~~~~sp~~~~~~s--~~~~~~~~~l~~~~~~~ 347 (402)
T 2aq5_A 311 SSKESQRGMGYMPKRGLEVN--KCEIARFYKLHERKCEP 347 (402)
T ss_dssp CCSSCCSEEEECCGGGSCGG--GTEEEEEEEEETTEEEE
T ss_pred ccCCcccceEEeccccccee--cceeEEEEEcCCCcEEE
Confidence 5689999999999998875 56799999998765443
No 93
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.5e-30 Score=301.67 Aligned_cols=291 Identities=12% Similarity=0.077 Sum_probs=228.0
Q ss_pred ccCCcceEEEEEeCCCcEEEEEecCCceEEEeccCCceeeeeeccccceEEEEEeCCCCEEEEEecccEEEEEEeccCee
Q psy3053 577 HSHKEAITAVAICGEGISVASVGRDAMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTMLVGCWDSCVVIYDVECGRI 656 (917)
Q Consensus 577 ~~H~~~Vtsv~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~~~~~~~~V~sl~~spd~~~Lasgs~Dg~I~Iwdl~tg~~ 656 (917)
+.-...|.+++|||||+++||++.|++|+ |...+ +.+.+|...|.+++|+|+| .++.+.+|+ ++.
T Consensus 12 ~~~~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~---~~l~gh~~~v~~V~FsPdg-------~~~~~~~~~---~~~ 76 (588)
T 2j04_A 12 KEFEDWKNNLTWARDGTLYLTTFPDISIG--QPKYA---KDINCNSKNLFHVKEFPLE-------FENKLDFEL---AQQ 76 (588)
T ss_dssp CCCSSSSCCEEECTTSCEEEECSSSEEEE--EECCC---SCCSSBGGGTEEEEEECCC-------CCCTTTTSC---CCS
T ss_pred hHhhccEEEEEECCCCCEEEEEcCCceee--ccccc---ceecCCCccEEEEEECCCC-------CcceEEEEe---CCC
Confidence 34457899999999999999999999999 64444 4557899999999999998 455555554 433
Q ss_pred eEEec-cCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCC-----ceEEEEEeCCCCEEEE
Q psy3053 657 VTELA-GHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDN-----RIKCLAISKDNNQLAV 730 (917)
Q Consensus 657 i~~l~-~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~-----~V~~l~~spdg~~Las 730 (917)
...+. +|.+.|.+++|+|+|+.||+++.||+|++||..+ ......|.. .+.+++|||+|++|++
T Consensus 77 ~~~~~~~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~----------~l~~l~~~~~~~~~sv~svafSPDG~~LAs 146 (588)
T 2j04_A 77 NGLLNSQPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK----------MLTNLDSKGNLSSRTYHCFEWNPIESSIVV 146 (588)
T ss_dssp SCSSTTSCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE----------EEEECCCSSCSTTTCEEEEEECSSSSCEEE
T ss_pred ceEeecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc----------eeeeccCCCccccccEEEEEEcCCCCEEEE
Confidence 23333 5688999999999999999999999999999532 222222443 5999999999999999
Q ss_pred EECCCeEEEEECCCCee-------eEEec---CCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeE---EEEe--e
Q psy3053 731 GTEAGELIIWSLENHLM-------TQQLS---DDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQ---VCNK--V 795 (917)
Q Consensus 731 gs~dG~I~iwDl~~~~~-------~~~l~---~~h~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~tg~~---i~~~--~ 795 (917)
|+.||+|++||+.++.. +..+. .+|...|.+++|+|+| +++++.|+++++||+.++.. ...+ .
T Consensus 147 gs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~~~ 224 (588)
T 2j04_A 147 GNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQNA 224 (588)
T ss_dssp EETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEEEEECC
T ss_pred EcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccceeeeccc
Confidence 99999999999998753 45552 3678899999999999 88899999999999988763 2333 3
Q ss_pred cCCceEEEEEeCCCEEEEEeCCCeEEEEECCCCEEEEEEecCCCceEEE----eecCCEEEEEeCCCeEEEEECcCCe--
Q psy3053 796 FEEKLLCLSWAGEEKVILGGALGMVYLVDLIQVQLLKQVRAHKDAVLSL----HFDNCTMLVGCWDSCVVIYDVECGR-- 869 (917)
Q Consensus 796 ~~~~i~~l~~s~~~~lv~gs~dG~I~vwdl~~~~~i~~l~~h~~~V~si----s~dg~~Lasgs~DG~I~Iwdl~tg~-- 869 (917)
+...|.+++|+ ++.+++++ +|.|++||+.+++......+|.+.+..+ ++++..++++++||+ ++|....-.
T Consensus 225 h~~~V~svaFs-g~~LASa~-~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~d~~~~s 301 (588)
T 2j04_A 225 SRRKITDLKIV-DYKVVLTC-PGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKESTILLMSNKTSY-KVLLEDELHVT 301 (588)
T ss_dssp CSSCCCCEEEE-TTEEEEEC-SSEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCEEEEECSSCEE-EEEESSSEEEE
T ss_pred ccCcEEEEEEE-CCEEEEEe-CCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEeeccEEEC
Confidence 55789999999 45777776 6999999999988855444899988866 557888999999999 999875211
Q ss_pred ---------------------EEEEecCCCCCEEEEEEcCCCCEEEEEeC
Q psy3053 870 ---------------------IVTELAGHEDAISCVAWDEKRKRLISGNL 898 (917)
Q Consensus 870 ---------------------~l~~l~~h~~~V~slafSpdg~~LaSgs~ 898 (917)
.+..+. +...|.+++|||||+.+|+++.
T Consensus 302 pd~~l~a~~d~~v~lW~~~g~~l~~~~-~~~~I~~va~SPdG~~lA~~~~ 350 (588)
T 2j04_A 302 ADNIIAPYLEKKFKKWSTIWNEFNNYE-TTLVIHGISLSPDGYSIAIVYD 350 (588)
T ss_dssp CCCSSHHHHHHHHHHTTTTTTSSSSSC-CEEEEEEEEECTTSSEEEEEEE
T ss_pred CCceEEEEcCCEEEEEECCCCceeeec-cceEEEEEEECCCCCEEEEEEe
Confidence 011111 2345999999999999999863
No 94
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=99.97 E-value=3.5e-29 Score=282.74 Aligned_cols=258 Identities=14% Similarity=0.115 Sum_probs=223.1
Q ss_pred ccccCCccc-----cceeeeccCCcceEEEEEeCC----C---cEEEEEecCCceEEEeccCCce-----eeeeecc---
Q psy3053 562 NSWCDKSIL-----EPLHFCHSHKEAITAVAICGE----G---ISVASVGRDAMLKIHSLKTGRQ-----ERSAVLS--- 621 (917)
Q Consensus 562 ~~w~~~~~l-----~~~~~l~~H~~~Vtsv~fSpd----g---~~Lasgs~Dg~I~IWd~~t~~~-----~~~~~~~--- 621 (917)
.+|+..... ++...+.+|...|++++|+|+ | ++|++++.||.|++|++.+++. ...+..|
T Consensus 39 ~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~ 118 (397)
T 1sq9_A 39 KVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSD 118 (397)
T ss_dssp EEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTT
T ss_pred EEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCcccccccceeecccccc
Confidence 577765432 367888899999999999999 9 9999999999999999999887 7778888
Q ss_pred --ccceEEEEEe----CCCCE-EEEEecccEEEEEEecc------CeeeE-----Ee-------ccCCCceeEEEecCCC
Q psy3053 622 --SMTLSSLCIL----PDNCT-MLVGCWDSCVVIYDVEC------GRIVT-----EL-------AGHEDAISCVAWDEKR 676 (917)
Q Consensus 622 --~~~V~sl~~s----pd~~~-Lasgs~Dg~I~Iwdl~t------g~~i~-----~l-------~~H~~~Vt~l~~spd~ 676 (917)
...|.+++|+ |+++. +++|+.||.|++||+.+ ++.+. .+ ..|...|++++|+|++
T Consensus 119 ~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 198 (397)
T 1sq9_A 119 MKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG 198 (397)
T ss_dssp GGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS
T ss_pred cCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc
Confidence 5899999999 99999 99999999999999998 66665 66 4489999999999999
Q ss_pred CEEEEEECCCeEEEEeCCCCCCCccCCcceeeecc---C---CCceEEEEEeCCCCEEEEEECC---CeEEEEECCCCee
Q psy3053 677 KRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLD---L---DNRIKCLAISKDNNQLAVGTEA---GELIIWSLENHLM 747 (917)
Q Consensus 677 ~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~---h---~~~V~~l~~spdg~~Lasgs~d---G~I~iwDl~~~~~ 747 (917)
.+++|+.||.|++||+.++ ........ | ...|.+++|+|+++++++|+.| |.|++||+++++.
T Consensus 199 -~l~~~~~dg~i~i~d~~~~-------~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~ 270 (397)
T 1sq9_A 199 -LIATGFNNGTVQISELSTL-------RPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGER 270 (397)
T ss_dssp -EEEEECTTSEEEEEETTTT-------EEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCE
T ss_pred -eEEEEeCCCcEEEEECCCC-------ceeEEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCcc
Confidence 9999999999999999765 23333445 7 8999999999999999999999 9999999999999
Q ss_pred eEEecCC-------------CCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeEEEEee-------c-----------
Q psy3053 748 TQQLSDD-------------INASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCNKV-------F----------- 796 (917)
Q Consensus 748 ~~~l~~~-------------h~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~tg~~i~~~~-------~----------- 796 (917)
+..+. . |...|.+++|+|++++|++++.||.|++||+.+++.+..+. +
T Consensus 271 ~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 349 (397)
T 1sq9_A 271 IGSLS-VPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHG 349 (397)
T ss_dssp EEEEC-BC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTS
T ss_pred cceec-cCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCceeEEEecccCcccchhhhhcccccc
Confidence 88887 5 88999999999999999999999999999999999888776 3
Q ss_pred ----CCceEEEEEeCCC-----------EEEEEeCCCeEEEEECCCC
Q psy3053 797 ----EEKLLCLSWAGEE-----------KVILGGALGMVYLVDLIQV 828 (917)
Q Consensus 797 ----~~~i~~l~~s~~~-----------~lv~gs~dG~I~vwdl~~~ 828 (917)
...+.+++|++++ .+++|+.||.|++|++.++
T Consensus 350 ~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g 396 (397)
T 1sq9_A 350 DSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAGG 396 (397)
T ss_dssp CBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC-
T ss_pred ccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEcCCC
Confidence 6789999999884 6778888888888887665
No 95
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.97 E-value=2.4e-28 Score=282.76 Aligned_cols=304 Identities=9% Similarity=0.040 Sum_probs=235.4
Q ss_pred CcceEEEEEeCCCcEEEEEecCCceEEEeccCCc---eeeeeecc-----------------------------------
Q psy3053 580 KEAITAVAICGEGISVASVGRDAMLKIHSLKTGR---QERSAVLS----------------------------------- 621 (917)
Q Consensus 580 ~~~Vtsv~fSpdg~~Lasgs~Dg~I~IWd~~t~~---~~~~~~~~----------------------------------- 621 (917)
..++.+++|+++|++|+++ .++.|++||+.+|+ .+..+..+
T Consensus 4 ~~p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (450)
T 2vdu_B 4 IHPLQNLLTSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGD 82 (450)
T ss_dssp ECCCCEEEECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC----------------------------------
T ss_pred cccEEEEEecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCc
Confidence 3578999999999966655 68899999999998 55444322
Q ss_pred -------------------ccceEEEEEeCCCCEE-EEEecccEEEEEEec--cCeeeEEec--cCCCceeEEEecCCCC
Q psy3053 622 -------------------SMTLSSLCILPDNCTM-LVGCWDSCVVIYDVE--CGRIVTELA--GHEDAISCVAWDEKRK 677 (917)
Q Consensus 622 -------------------~~~V~sl~~spd~~~L-asgs~Dg~I~Iwdl~--tg~~i~~l~--~H~~~Vt~l~~spd~~ 677 (917)
...|.+++|+|++++| ++|+.||.|++||+. +++.+..+. .|...|++++|+|+++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~ 162 (450)
T 2vdu_B 83 SIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDT 162 (450)
T ss_dssp -----------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSS
T ss_pred cccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCC
Confidence 2269999999999996 889999999999999 888888876 5778999999999999
Q ss_pred EEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCC---CCEEEEEECCCeEEEEECCCCeeeEEecCC
Q psy3053 678 RLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKD---NNQLAVGTEAGELIIWSLENHLMTQQLSDD 754 (917)
Q Consensus 678 ~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd---g~~Lasgs~dG~I~iwDl~~~~~~~~l~~~ 754 (917)
+|++|+.||.|.+|++.+...... ......+|...|.+++|+|+ +++|++|+.||.|++||+.+++.+..+..+
T Consensus 163 ~l~~~~~~g~v~~~~~~~~~~~~~---~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~ 239 (450)
T 2vdu_B 163 TVIIADKFGDVYSIDINSIPEEKF---TQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFG 239 (450)
T ss_dssp EEEEEETTSEEEEEETTSCCCSSC---CCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCC
T ss_pred EEEEEeCCCcEEEEecCCcccccc---cceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecC
Confidence 999999999999999977621110 11234578899999999999 999999999999999999999888875558
Q ss_pred CCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCceEEEEEeC---CCEEEEEeCCCeEEEEECCCCEEE
Q psy3053 755 INASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCNKVFEEKLLCLSWAG---EEKVILGGALGMVYLVDLIQVQLL 831 (917)
Q Consensus 755 h~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~tg~~i~~~~~~~~i~~l~~s~---~~~lv~gs~dG~I~vwdl~~~~~i 831 (917)
|...|.+++|+ ++++|++++.|+.|++||+.+++.+..+.....+..+.+.. ...+. .
T Consensus 240 h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------~ 300 (450)
T 2vdu_B 240 HKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQ------------------N 300 (450)
T ss_dssp CSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC------------------------
T ss_pred CCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhccccccccc------------------c
Confidence 99999999999 99999999999999999999998776654322111111100 00000 0
Q ss_pred EEEecCCCceEEE--eecCCEEEEEe-CCCeEEEEEC--cCC---eEEEEecCCCCCEEEEEEcCCCCEEEEE-eC----
Q psy3053 832 KQVRAHKDAVLSL--HFDNCTMLVGC-WDSCVVIYDV--ECG---RIVTELAGHEDAISCVAWDEKRKRLISG-NL---- 898 (917)
Q Consensus 832 ~~l~~h~~~V~si--s~dg~~Lasgs-~DG~I~Iwdl--~tg---~~l~~l~~h~~~V~slafSpdg~~LaSg-s~---- 898 (917)
.........|.++ +++++++++++ .|+.|++|++ .++ +.+..+.+| +.|.+++|+|++ .++++ +.
T Consensus 301 ~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~-~~v~~~~~~~~~-~~v~~~~~~~~~ 378 (450)
T 2vdu_B 301 ENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFP-YNVISLSAHNDE-FQVTLDNKESSG 378 (450)
T ss_dssp ----CBCCCEEEEEECSSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS-SCEEEEEEETTE-EEEEECCTTCCS
T ss_pred cccccceEEEEEEEEeCCCCEEEEEECCCCeEEEEEeccCCCCceeeccEeccC-CceEEEEecCCc-EEEEEecccCCC
Confidence 0001233456666 56899999998 8999999999 666 778888888 889999999964 44444 32
Q ss_pred --CCcEEEEecC
Q psy3053 899 --VGAPKLYATE 908 (917)
Q Consensus 899 --DG~V~IWdl~ 908 (917)
+..|.+|.++
T Consensus 379 ~~~~~i~v~~~~ 390 (450)
T 2vdu_B 379 VQKNFAKFIEYN 390 (450)
T ss_dssp SCCCSEEEEEEE
T ss_pred CCCcceEEEEEE
Confidence 5568999875
No 96
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.8e-29 Score=290.02 Aligned_cols=302 Identities=9% Similarity=0.121 Sum_probs=240.5
Q ss_pred EEeCCCcEEEEEecCCceEEEeccCCceeeee-eccccceEEEEEeC-CCCEEEEEecccEEEEEEecc---Ce---eeE
Q psy3053 587 AICGEGISVASVGRDAMLKIHSLKTGRQERSA-VLSSMTLSSLCILP-DNCTMLVGCWDSCVVIYDVEC---GR---IVT 658 (917)
Q Consensus 587 ~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~~-~~~~~~V~sl~~sp-d~~~Lasgs~Dg~I~Iwdl~t---g~---~i~ 658 (917)
.|+|++..+++++ .|+ .+++.+..+ .+|...|.+++|+| ++++|++|+.||+|++||+.+ +. ...
T Consensus 34 ~f~~~~~~~~~~~------~w~-~~g~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~ 106 (437)
T 3gre_A 34 EFGPIQEIVRSPN------MGN-LRGKLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSL 106 (437)
T ss_dssp GGCCCCCCCCCCC------GGG-CCCCEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSE
T ss_pred hcCCccccccccc------ccc-ccceEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceee
Confidence 4678887777665 377 557777778 78899999999999 999999999999999999987 43 222
Q ss_pred EeccCCCceeEEEecCCCCEEEEEECCCeEEEEeCC---CCCCCccCC-cce--eeecc--CCCceEEEE--EeCCCCEE
Q psy3053 659 ELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTG---ASWSHMKPS-KSL--VSQLD--LDNRIKCLA--ISKDNNQL 728 (917)
Q Consensus 659 ~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~---~~~~~~~~~-~~~--~~~~~--h~~~V~~l~--~spdg~~L 728 (917)
.+ +|.+.|++++|+|++++|++|+.||+|++||+. .+....... ... ..... +...+.++. +++++..+
T Consensus 107 ~~-~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l 185 (437)
T 3gre_A 107 TY-DCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLL 185 (437)
T ss_dssp EE-ECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEE
T ss_pred ec-cCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEE
Confidence 33 599999999999999999999999999999985 221000000 000 01111 567788887 56889999
Q ss_pred EEEECCCeEEEEECCCCeeeEEecCC-CCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeEEEEe--ecCCceEEEEE
Q psy3053 729 AVGTEAGELIIWSLENHLMTQQLSDD-INASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCNK--VFEEKLLCLSW 805 (917)
Q Consensus 729 asgs~dG~I~iwDl~~~~~~~~l~~~-h~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~tg~~i~~~--~~~~~i~~l~~ 805 (917)
++|+.||.|++||+++++.+..+... |...|.+++|+|++.+|++|+.||.|++||+++++.+... .+...+.++++
T Consensus 186 ~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~ 265 (437)
T 3gre_A 186 VALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEV 265 (437)
T ss_dssp EEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEE
T ss_pred EEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEe
Confidence 99999999999999999999988832 7899999999999999999999999999999999988876 45567999977
Q ss_pred eC----CC-EEEEEeCCCeEEEEECCCCEEEEEEecCC--------------------------CceEEEee-cCCEEEE
Q psy3053 806 AG----EE-KVILGGALGMVYLVDLIQVQLLKQVRAHK--------------------------DAVLSLHF-DNCTMLV 853 (917)
Q Consensus 806 s~----~~-~lv~gs~dG~I~vwdl~~~~~i~~l~~h~--------------------------~~V~sis~-dg~~Las 853 (917)
++ ++ .+++|+.||.|++||+.+++.+..+.+|. ..|.++++ ++++|++
T Consensus 266 ~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~~~~~l~s 345 (437)
T 3gre_A 266 CQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVSNDKILLT 345 (437)
T ss_dssp CTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEETTEEEEE
T ss_pred ccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEECCceEEEe
Confidence 64 44 57888999999999999999988887553 34555533 5678999
Q ss_pred EeCCCeEEEEECcCCeEEEEecCCC---CCEEEEEEcCCCCEEEEE
Q psy3053 854 GCWDSCVVIYDVECGRIVTELAGHE---DAISCVAWDEKRKRLISG 896 (917)
Q Consensus 854 gs~DG~I~Iwdl~tg~~l~~l~~h~---~~V~slafSpdg~~LaSg 896 (917)
|+.||.|++||+.+++....+.+|. ..+....+++...+++..
T Consensus 346 ~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (437)
T 3gre_A 346 DEATSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRK 391 (437)
T ss_dssp EGGGTEEEEEETTCGGGCEEEECC--CCCEEEEEEEETTEEEEEEE
T ss_pred cCCCCeEEEEECCCcccceEEecccccCceEEEEEeecceEEEEEe
Confidence 9999999999999999888888764 345666777766655554
No 97
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=99.97 E-value=8.3e-29 Score=276.44 Aligned_cols=262 Identities=15% Similarity=0.168 Sum_probs=222.6
Q ss_pred eeccccceEEEEEeCCCCEEEEEecccEEEEEEeccCe--eeEEeccCCCceeEEEecCCCCEEEEEECCCeEEEEeCCC
Q psy3053 618 AVLSSMTLSSLCILPDNCTMLVGCWDSCVVIYDVECGR--IVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGA 695 (917)
Q Consensus 618 ~~~~~~~V~sl~~spd~~~Lasgs~Dg~I~Iwdl~tg~--~i~~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~ 695 (917)
+..|..+|.+++|+|+++++++|+.||.|++||+.+++ .+..+.+|...|++++|+|++++|++++.||.|++||+.+
T Consensus 4 ~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~ 83 (372)
T 1k8k_C 4 HSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKG 83 (372)
T ss_dssp EESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEET
T ss_pred ecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCC
Confidence 34578899999999999999999999999999999997 8889999999999999999999999999999999999866
Q ss_pred CCCCccCCcceeeeccCCCceEEEEEeCCCCEEEEEECCCeEEEEECCCCee---eEEecCCCCCCeEEEEEecCCCEEE
Q psy3053 696 SWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGELIIWSLENHLM---TQQLSDDINASVNGVLFSEDGCRVL 772 (917)
Q Consensus 696 ~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~dG~I~iwDl~~~~~---~~~l~~~h~~~V~~v~fspdg~~L~ 772 (917)
+. .........|...|.+++|+|+++.+++|+.||.|++||++.+.. ...+...|...|.+++|+|+++.++
T Consensus 84 ~~-----~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 158 (372)
T 1k8k_C 84 RT-----WKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLA 158 (372)
T ss_dssp TE-----EEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEE
T ss_pred Ce-----eeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEE
Confidence 51 112233457889999999999999999999999999999988763 4445447889999999999999999
Q ss_pred EEeCCCeEEEEECCCCeEEEEeecCCceEEEEEeCCCEEEEEeCCCeEEEE--ECCCCEEEEEEecCCCceEEE--eecC
Q psy3053 773 SCGNNCMLNVYDLTTGMQVCNKVFEEKLLCLSWAGEEKVILGGALGMVYLV--DLIQVQLLKQVRAHKDAVLSL--HFDN 848 (917)
Q Consensus 773 s~s~Dg~I~iwDl~tg~~i~~~~~~~~i~~l~~s~~~~lv~gs~dG~I~vw--dl~~~~~i~~l~~h~~~V~si--s~dg 848 (917)
+++.||.|++||+......... . ...| ....++.+..+.+|...|.++ ++++
T Consensus 159 ~~~~dg~i~~~d~~~~~~~~~~-------------~-----------~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 214 (372)
T 1k8k_C 159 AGSCDFKCRIFSAYIKEVEERP-------------A-----------PTPWGSKMPFGELMFESSSSCGWVHGVCFSANG 214 (372)
T ss_dssp EEETTSCEEEEECCCTTTSCCC-------------C-----------CBTTBSCCCTTCEEEECCCCSSCEEEEEECSSS
T ss_pred EEcCCCCEEEEEcccccccccc-------------c-----------ccccccccchhhheEecCCCCCeEEEEEECCCC
Confidence 9999999999998643210000 0 0001 123566777788899999988 5588
Q ss_pred CEEEEEeCCCeEEEEECcCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCc
Q psy3053 849 CTMLVGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGNLVGAPKLYATEF 909 (917)
Q Consensus 849 ~~Lasgs~DG~I~Iwdl~tg~~l~~l~~h~~~V~slafSpdg~~LaSgs~DG~V~IWdl~~ 909 (917)
++|++++.||.|++||+.+++.+..+..|..+|.+++|+|++.+|++| .||.|++|++..
T Consensus 215 ~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~ 274 (372)
T 1k8k_C 215 SRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAG-HDCFPVLFTYDS 274 (372)
T ss_dssp SEEEEEETTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEET
T ss_pred CEEEEEeCCCEEEEEECCCCceeEEEccCCCCeEEEEEecCCCEEEEE-eCCeEEEEEccC
Confidence 999999999999999999999999999999999999999999988887 999999999976
No 98
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=99.97 E-value=2.8e-28 Score=270.88 Aligned_cols=273 Identities=13% Similarity=0.137 Sum_probs=231.6
Q ss_pred ccccCCccccceeeeccCCcceEEEEEeCCCcEEEEEecCCceEEEeccCCceeeeeeccccceEEEEEeCCCCEEEEEe
Q psy3053 562 NSWCDKSILEPLHFCHSHKEAITAVAICGEGISVASVGRDAMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTMLVGC 641 (917)
Q Consensus 562 ~~w~~~~~l~~~~~l~~H~~~Vtsv~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~~~~~~~~V~sl~~spd~~~Lasgs 641 (917)
.+|+... .+.+..+.+|.+.|++++|+|++++|++++.||.|++||+.+++.+..+. +...+.+++|+|+++.+++++
T Consensus 57 ~vwd~~~-~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~ 134 (369)
T 3zwl_B 57 SVWYSLN-GERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATWK-SPVPVKRVEFSPCGNYFLAIL 134 (369)
T ss_dssp EEEETTT-CCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEE-CSSCEEEEEECTTSSEEEEEE
T ss_pred EEEeCCC-chhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEee-cCCCeEEEEEccCCCEEEEec
Confidence 5787544 46778899999999999999999999999999999999999999888877 778999999999999999999
Q ss_pred cc-----cEEEEEEeccCe-----------eeEEeccCCC--ceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCC
Q psy3053 642 WD-----SCVVIYDVECGR-----------IVTELAGHED--AISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPS 703 (917)
Q Consensus 642 ~D-----g~I~Iwdl~tg~-----------~i~~l~~H~~--~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~ 703 (917)
.+ |.|++||+..+. ....+..|.+ .+.+++|+|+++.|++++.||.|++||+.+. .
T Consensus 135 ~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~------~ 208 (369)
T 3zwl_B 135 DNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNN------Y 208 (369)
T ss_dssp CCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTT------T
T ss_pred CCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCC------c
Confidence 99 999999998763 3445556666 9999999999999999999999999999763 1
Q ss_pred cceeeeccCCCceEEEEEeCCCCEEEEEECCCeEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEEeCCCeEEEE
Q psy3053 704 KSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCGNNCMLNVY 783 (917)
Q Consensus 704 ~~~~~~~~h~~~V~~l~~spdg~~Lasgs~dG~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~Dg~I~iw 783 (917)
........|...|.+++|+|+++++++++.||.|++||+++++....+. +...+.+++|+|+++.+++++.++...+|
T Consensus 209 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 286 (369)
T 3zwl_B 209 EYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYE--TDCPLNTAVITPLKEFIILGGGQEAKDVT 286 (369)
T ss_dssp EEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE--CSSCEEEEEECSSSSEEEEEECCC-----
T ss_pred EeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCceeeeec--CCCCceeEEecCCCceEEEeecCCCceEE
Confidence 2344556788999999999999999999999999999999999888886 67899999999999999999999877776
Q ss_pred ECCCCeEEEEeecCCceEEEEEeCCCEEEEEeCCCeEEEEECCCCEEEEEEecCCCceEEE--eecCCEEEEEeCCCeEE
Q psy3053 784 DLTTGMQVCNKVFEEKLLCLSWAGEEKVILGGALGMVYLVDLIQVQLLKQVRAHKDAVLSL--HFDNCTMLVGCWDSCVV 861 (917)
Q Consensus 784 Dl~tg~~i~~~~~~~~i~~l~~s~~~~lv~gs~dG~I~vwdl~~~~~i~~l~~h~~~V~si--s~dg~~Lasgs~DG~I~ 861 (917)
..... .....+++||..+++.+..+.+|...|.++ ++++++|++|+.||.|+
T Consensus 287 ~~~~~--------------------------~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~ 340 (369)
T 3zwl_B 287 TTSAN--------------------------EGKFEARFYHKIFEEEIGRVQGHFGPLNTVAISPQGTSYASGGEDGFIR 340 (369)
T ss_dssp ----------------------------------CEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred EEecC--------------------------CCcceeEEEecCCCcchhheecccCcEEEEEECCCCCEEEEEcCCCeEE
Confidence 54321 223478999999999999999999999998 55899999999999999
Q ss_pred EEECcCCeE
Q psy3053 862 IYDVECGRI 870 (917)
Q Consensus 862 Iwdl~tg~~ 870 (917)
+|+++++..
T Consensus 341 iw~~~~~~~ 349 (369)
T 3zwl_B 341 LHHFEKSYF 349 (369)
T ss_dssp EEEECHHHH
T ss_pred EEECccccc
Confidence 999976543
No 99
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.97 E-value=2.6e-27 Score=267.36 Aligned_cols=304 Identities=13% Similarity=0.137 Sum_probs=248.3
Q ss_pred cEEEEEecCCceEEEeccCCceeeeeeccccceEEEEEeCCCCEE-EEEecccEEEEEEeccCeeeEEeccCCCceeEEE
Q psy3053 593 ISVASVGRDAMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTM-LVGCWDSCVVIYDVECGRIVTELAGHEDAISCVA 671 (917)
Q Consensus 593 ~~Lasgs~Dg~I~IWd~~t~~~~~~~~~~~~~V~sl~~spd~~~L-asgs~Dg~I~Iwdl~tg~~i~~l~~H~~~Vt~l~ 671 (917)
..+++++.|+.|++||+.+++....+..+. .+.+++|+|+++.+ ++++.|+.|++||+.+++.+..+..+. .+.+++
T Consensus 3 ~l~vs~~~d~~v~v~d~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~-~v~~~~ 80 (391)
T 1l0q_A 3 FAYIANSESDNISVIDVTSNKVTATIPVGS-NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGVA 80 (391)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEEE
T ss_pred EEEEEcCCCCEEEEEECCCCeEEEEeecCC-CcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCC-CccceE
Confidence 467888899999999999999888887665 47999999999977 667789999999999999998887665 899999
Q ss_pred ecCCCCEEEEE-ECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEE-EEEECCCeEEEEECCCCeeeE
Q psy3053 672 WDEKRKRLISG-SWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQL-AVGTEAGELIIWSLENHLMTQ 749 (917)
Q Consensus 672 ~spd~~~L~Sg-s~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~L-asgs~dG~I~iwDl~~~~~~~ 749 (917)
|+|++++|+.+ +.|+.|++||+.++ .......+...+.+++|+|+++.+ ++++.++.|++||+.+++...
T Consensus 81 ~spdg~~l~~~~~~~~~v~v~d~~~~--------~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~ 152 (391)
T 1l0q_A 81 VSPDGKQVYVTNMASSTLSVIDTTSN--------TVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVIN 152 (391)
T ss_dssp ECTTSSEEEEEETTTTEEEEEETTTT--------EEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEE
T ss_pred ECCCCCEEEEEECCCCEEEEEECCCC--------eEEEEEeCCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEE
Confidence 99999988654 46799999999876 233334456678999999999977 677889999999999999888
Q ss_pred EecCCCCCCeEEEEEecCCCEE-EEEeCCCeEEEEECCCCeEEEEeecCCceEEEEEeCCC-EEEEEe---CCCeEEEEE
Q psy3053 750 QLSDDINASVNGVLFSEDGCRV-LSCGNNCMLNVYDLTTGMQVCNKVFEEKLLCLSWAGEE-KVILGG---ALGMVYLVD 824 (917)
Q Consensus 750 ~l~~~h~~~V~~v~fspdg~~L-~s~s~Dg~I~iwDl~tg~~i~~~~~~~~i~~l~~s~~~-~lv~gs---~dG~I~vwd 824 (917)
.+. ....+.+++|+|+|+.+ ++++.++.|++||+++++......+...+.++++++++ .+++++ .++.|++||
T Consensus 153 ~~~--~~~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d 230 (391)
T 1l0q_A 153 TVS--VGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMID 230 (391)
T ss_dssp EEE--CCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEE
T ss_pred EEe--cCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEecCCCccceEECCCCCEEEEEecCcCCCcEEEEE
Confidence 876 34567999999999988 56678899999999999998888888889999999876 466666 689999999
Q ss_pred CCCCEEEEEEecCCCceEEE--eecCCEE-EEEeCCCeEEEEECcCCeEEEEecCCCCCEE---EEEEcC----------
Q psy3053 825 LIQVQLLKQVRAHKDAVLSL--HFDNCTM-LVGCWDSCVVIYDVECGRIVTELAGHEDAIS---CVAWDE---------- 888 (917)
Q Consensus 825 l~~~~~i~~l~~h~~~V~si--s~dg~~L-asgs~DG~I~Iwdl~tg~~l~~l~~h~~~V~---slafSp---------- 888 (917)
+.+++.+..+..|.. +.++ +++++.+ ++++.|+.|++||+.+++.+..+..|..+.. .+.+.|
T Consensus 231 ~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~f 309 (391)
T 1l0q_A 231 TGTNKITARIPVGPD-PAGIAVTPDGKKVYVALSFXNTVSVIDTATNTITATMAVGKNPYASGQFIGSIPVQPVYPSADF 309 (391)
T ss_dssp TTTTEEEEEEECCSS-EEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEECCSSCEEECSSCCCCCBCCE
T ss_pred CCCCeEEEEEecCCC-ccEEEEccCCCEEEEEcCCCCEEEEEECCCCcEEEEEECCcCCCccceeeeccccccccccccc
Confidence 999999998887665 4555 6789877 6678899999999999999998877655421 122222
Q ss_pred --CC----------CEEEEEeCCCcEEEEecCc
Q psy3053 889 --KR----------KRLISGNLVGAPKLYATEF 909 (917)
Q Consensus 889 --dg----------~~LaSgs~DG~V~IWdl~~ 909 (917)
+. ..+...+.|..+++|++..
T Consensus 310 s~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~ 342 (391)
T 1l0q_A 310 KSNITSGYIFLSEPVQFTDLSKDATEWKWDFGD 342 (391)
T ss_dssp EESCCSSEEETTCCEEEEECCBSCSEEEEECSS
T ss_pred ccccccccccccceEEEEeCCCCceEEEEECCC
Confidence 11 2455667789999999964
No 100
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=99.97 E-value=3.5e-28 Score=278.80 Aligned_cols=277 Identities=19% Similarity=0.242 Sum_probs=217.1
Q ss_pred ccccccccCCcccccee--eeccCCcceEEEEEeCCCcEEEEEecCCceEEEeccCCceeeeeeccccceEEEEEeCCCC
Q psy3053 558 SDVSNSWCDKSILEPLH--FCHSHKEAITAVAICGEGISVASVGRDAMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNC 635 (917)
Q Consensus 558 ~d~~~~w~~~~~l~~~~--~l~~H~~~Vtsv~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~~~~~~~~V~sl~~spd~~ 635 (917)
.....+|+..++ +... .+.+|.+.|++|+|+|+|++|++|+.||+|++||+.+++.++.+.+|...+.++++ ++.
T Consensus 124 d~tV~lWd~~tg-~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~~~h~~~v~~~s~--~~~ 200 (420)
T 4gga_A 124 DNSVYLWSASSG-DILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSW--NSY 200 (420)
T ss_dssp TTEEEEEETTTC-CEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEE--ETT
T ss_pred CCEEEEEECCCC-CEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCceEEEee--CCC
Confidence 334478987664 3333 44678899999999999999999999999999999999999999999999988776 567
Q ss_pred EEEEEecccEEEEEEeccC-eeeEEeccCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCC
Q psy3053 636 TMLVGCWDSCVVIYDVECG-RIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDN 714 (917)
Q Consensus 636 ~Lasgs~Dg~I~Iwdl~tg-~~i~~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~ 714 (917)
.+++|+.|+.+++||.... ..+..+.+|...+.++.++|+++++++++.|+.+++|+...+... .........|..
T Consensus 201 ~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~---~~~~~~~~~~~~ 277 (420)
T 4gga_A 201 ILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGG---WVPLQTFTQHQG 277 (420)
T ss_dssp EEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSC---SCCSEEECCCSS
T ss_pred EEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCCCeeeeeeccccceEEeecccccc---ceeeeeecccCC
Confidence 9999999999999998864 556788999999999999999999999999999999999876321 123345667889
Q ss_pred ceEEEEEeCCC-CEEEEE--ECCCeEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEEe--CCCeEEEEECCCCe
Q psy3053 715 RIKCLAISKDN-NQLAVG--TEAGELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCG--NNCMLNVYDLTTGM 789 (917)
Q Consensus 715 ~V~~l~~spdg-~~Lasg--s~dG~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s--~Dg~I~iwDl~tg~ 789 (917)
.|.+++|+|.+ ..++++ +.||.|++||+.+++....+. +...+.++.|+|+++.+++++ .|+.|++||+
T Consensus 278 ~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~--~~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~---- 351 (420)
T 4gga_A 278 AVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVD--AHSQVCSILWSPHYKELISGHGFAQNQLVIWKY---- 351 (420)
T ss_dssp CEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEE--CSSCEEEEEEETTTTEEEEEECTTTCCEEEEET----
T ss_pred ceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeec--cccceeeeeecCCCCeEEEEEecCCCEEEEEEC----
Confidence 99999999976 455543 579999999999999988886 456899999999998887764 4555555554
Q ss_pred EEEEeecCCceEEEEEeCCCEEEEEeCCCeEEEEECCCCEEEEEEecCCCceEEE--eecCCEEEEEeCCCeEEEEECcC
Q psy3053 790 QVCNKVFEEKLLCLSWAGEEKVILGGALGMVYLVDLIQVQLLKQVRAHKDAVLSL--HFDNCTMLVGCWDSCVVIYDVEC 867 (917)
Q Consensus 790 ~i~~~~~~~~i~~l~~s~~~~lv~gs~dG~I~vwdl~~~~~i~~l~~h~~~V~si--s~dg~~Lasgs~DG~I~Iwdl~t 867 (917)
.+++++.++.+|.+.|+++ +|+|++|++|+.||+|++||+..
T Consensus 352 ------------------------------------~~~~~v~~l~gH~~~V~~l~~spdg~~l~S~s~D~tvriWdv~~ 395 (420)
T 4gga_A 352 ------------------------------------PTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFE 395 (420)
T ss_dssp ------------------------------------TTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSC
T ss_pred ------------------------------------CCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCC
Confidence 4455566677888888887 56888899999999999998876
Q ss_pred CeEEEEecCCCCCEE
Q psy3053 868 GRIVTELAGHEDAIS 882 (917)
Q Consensus 868 g~~l~~l~~h~~~V~ 882 (917)
..+......+...+.
T Consensus 396 ~~~~~~~~~~~~~~~ 410 (420)
T 4gga_A 396 LDPARRREREKASAA 410 (420)
T ss_dssp SSCC-----------
T ss_pred CCccchhhhccCCcc
Confidence 665555554444433
No 101
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=99.97 E-value=8.6e-30 Score=286.17 Aligned_cols=261 Identities=12% Similarity=0.140 Sum_probs=210.1
Q ss_pred eeccccceEEEEEeCCCCEEEEEecccEEEEEEeccC--eeeEEeccCCCceeEEEecCCCCEEEEEECCCeEEEEeCCC
Q psy3053 618 AVLSSMTLSSLCILPDNCTMLVGCWDSCVVIYDVECG--RIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGA 695 (917)
Q Consensus 618 ~~~~~~~V~sl~~spd~~~Lasgs~Dg~I~Iwdl~tg--~~i~~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~ 695 (917)
...+..+|.+++|+|++++|++|+.||.|++||+.++ +.+..+.+|.+.|++++|+|++++|++|+.||+|++||+.+
T Consensus 7 ~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~ 86 (377)
T 3dwl_C 7 LHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRP 86 (377)
T ss_dssp EEECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC----
T ss_pred EecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCC
Confidence 3445678999999999999999999999999999998 78888999999999999999999999999999999999987
Q ss_pred CCCCccCCcceeeeccCCCceEEEEEeCCCCEEEEEECCCeEEEEECCCCe---eeEEecCCCCCCeEEEEEecCCCEEE
Q psy3053 696 SWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGELIIWSLENHL---MTQQLSDDINASVNGVLFSEDGCRVL 772 (917)
Q Consensus 696 ~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~dG~I~iwDl~~~~---~~~~l~~~h~~~V~~v~fspdg~~L~ 772 (917)
+. ..........|...|.+++|+|+++.+++|+.||.|++||+++++ ....+...|...|.+++|+|++++|+
T Consensus 87 ~~----~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~ 162 (377)
T 3dwl_C 87 DG----TWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLA 162 (377)
T ss_dssp ------CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEE
T ss_pred CC----ceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEE
Confidence 62 112344566799999999999999999999999999999999887 36677644999999999999999999
Q ss_pred EEeCCCeEEEEECCCCeEEEEeecCCceEEEEEeCCCEEEEEeCCCeEEEEE--CCCCEEEEEEecCCCceEEE--eecC
Q psy3053 773 SCGNNCMLNVYDLTTGMQVCNKVFEEKLLCLSWAGEEKVILGGALGMVYLVD--LIQVQLLKQVRAHKDAVLSL--HFDN 848 (917)
Q Consensus 773 s~s~Dg~I~iwDl~tg~~i~~~~~~~~i~~l~~s~~~~lv~gs~dG~I~vwd--l~~~~~i~~l~~h~~~V~si--s~dg 848 (917)
+++.|+.|++||+.++........ ..|. +..++++..+ +|...|.++ +|++
T Consensus 163 ~~~~d~~i~iwd~~~~~~~~~~~~------------------------~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~ 217 (377)
T 3dwl_C 163 AGCADRKAYVLSAYVRDVDAKPEA------------------------SVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSG 217 (377)
T ss_dssp EEESSSCEEEEEECCSSCC-CCCS------------------------CSSCSCCCEEEEEECC-CCSSSEEEEEECTTS
T ss_pred EEeCCCEEEEEEEEecccCCCccc------------------------cccccccchhhhhhcc-cCCceEEEEEECCCC
Confidence 999999999999875432111000 0010 1234455666 899999988 5689
Q ss_pred CEEEEEeCCCeEEEEECcCCeE----EEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecC
Q psy3053 849 CTMLVGCWDSCVVIYDVECGRI----VTELAGHEDAISCVAWDEKRKRLISGNLVGAPKLYATE 908 (917)
Q Consensus 849 ~~Lasgs~DG~I~Iwdl~tg~~----l~~l~~h~~~V~slafSpdg~~LaSgs~DG~V~IWdl~ 908 (917)
++|++|+.||.|++||+.+++. +..+.+|..+|.+++|+|++++|++|+.|+.+ +|+..
T Consensus 218 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~ 280 (377)
T 3dwl_C 218 NALAYAGHDSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLWANESAIVAAGYNYSPI-LLQGN 280 (377)
T ss_dssp SCEEEEETTTEEC-CEECSTTSCEEECCCEECSSSCEEEEEEEETTEEEEEESSSSEE-EECCC
T ss_pred CEEEEEeCCCcEEEEECCCCCCcceeeEeecCCCCceEEEEEcCCCCEEEEEcCCcEE-EEEeC
Confidence 9999999999999999999887 77889999999999999999999998877665 66664
No 102
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.97 E-value=3.7e-28 Score=279.78 Aligned_cols=255 Identities=16% Similarity=0.211 Sum_probs=209.3
Q ss_pred eeeeccccceEEEEEeCC-CCEEEEEecccEEEEEEecc----------CeeeEEeccCCCceeEEEecCCCC-EEEEEE
Q psy3053 616 RSAVLSSMTLSSLCILPD-NCTMLVGCWDSCVVIYDVEC----------GRIVTELAGHEDAISCVAWDEKRK-RLISGS 683 (917)
Q Consensus 616 ~~~~~~~~~V~sl~~spd-~~~Lasgs~Dg~I~Iwdl~t----------g~~i~~l~~H~~~Vt~l~~spd~~-~L~Sgs 683 (917)
.....|...|.+++|+|+ +.++++|+.||.|++|++.+ .+....+.+|...|++++|+|++. +|++|+
T Consensus 122 ~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~ 201 (430)
T 2xyi_A 122 EIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSAS 201 (430)
T ss_dssp EEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEEC
T ss_pred EEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEe
Confidence 345568889999999997 68999999999999999987 577888899999999999999988 999999
Q ss_pred CCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeC-CCCEEEEEECCCeEEEEECCCC---eeeEEecCCCCCCe
Q psy3053 684 WDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISK-DNNQLAVGTEAGELIIWSLENH---LMTQQLSDDINASV 759 (917)
Q Consensus 684 ~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp-dg~~Lasgs~dG~I~iwDl~~~---~~~~~l~~~h~~~V 759 (917)
.||+|++||+..+...............|...|.+++|+| ++..+++++.||.|++||++++ +....+. .|...|
T Consensus 202 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~-~~~~~v 280 (430)
T 2xyi_A 202 DDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVD-AHTAEV 280 (430)
T ss_dssp TTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEE-CCSSCE
T ss_pred CCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEee-cCCCCe
Confidence 9999999999874221111112334557899999999999 6789999999999999999987 4566665 788999
Q ss_pred EEEEEecCCC-EEEEEeCCCeEEEEECCCCeEEEEeecCCceEEEEEeCCCEEEEEeCCCeEEEEECCCCEEEEEEecCC
Q psy3053 760 NGVLFSEDGC-RVLSCGNNCMLNVYDLTTGMQVCNKVFEEKLLCLSWAGEEKVILGGALGMVYLVDLIQVQLLKQVRAHK 838 (917)
Q Consensus 760 ~~v~fspdg~-~L~s~s~Dg~I~iwDl~tg~~i~~~~~~~~i~~l~~s~~~~lv~gs~dG~I~vwdl~~~~~i~~l~~h~ 838 (917)
++++|+|++. .+++|+.||.|++||+++.. .++..+.+|.
T Consensus 281 ~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~---------------------------------------~~~~~~~~h~ 321 (430)
T 2xyi_A 281 NCLSFNPYSEFILATGSADKTVALWDLRNLK---------------------------------------LKLHSFESHK 321 (430)
T ss_dssp EEEEECSSCTTEEEEEETTSEEEEEETTCTT---------------------------------------SCSEEEECCS
T ss_pred EEEEeCCCCCCEEEEEeCCCeEEEEeCCCCC---------------------------------------CCeEEeecCC
Confidence 9999999887 68889999999999987531 1223444566
Q ss_pred CceEEE--eecC-CEEEEEeCCCeEEEEECcC--------------CeEEEEecCCCCCEEEEEEcCCCC-EEEEEeCCC
Q psy3053 839 DAVLSL--HFDN-CTMLVGCWDSCVVIYDVEC--------------GRIVTELAGHEDAISCVAWDEKRK-RLISGNLVG 900 (917)
Q Consensus 839 ~~V~si--s~dg-~~Lasgs~DG~I~Iwdl~t--------------g~~l~~l~~h~~~V~slafSpdg~-~LaSgs~DG 900 (917)
..|.++ +|++ .++++++.||.|++||+.. .+.+....+|...|++++|+|+++ +|++++.||
T Consensus 322 ~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg 401 (430)
T 2xyi_A 322 DEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDN 401 (430)
T ss_dssp SCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTS
T ss_pred CCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCC
Confidence 777776 3445 4688888888888888876 367888889999999999999999 999999999
Q ss_pred cEEEEecCcc
Q psy3053 901 APKLYATEFY 910 (917)
Q Consensus 901 ~V~IWdl~~~ 910 (917)
.|++|++...
T Consensus 402 ~i~iw~~~~~ 411 (430)
T 2xyi_A 402 IMQVWQMAEN 411 (430)
T ss_dssp EEEEEEECHH
T ss_pred CEEEeEcccc
Confidence 9999999753
No 103
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=99.97 E-value=6.2e-28 Score=295.10 Aligned_cols=248 Identities=16% Similarity=0.235 Sum_probs=215.7
Q ss_pred EEeccCCCceeEEEecCC-CCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEEEECCCe
Q psy3053 658 TELAGHEDAISCVAWDEK-RKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGE 736 (917)
Q Consensus 658 ~~l~~H~~~Vt~l~~spd-~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~dG~ 736 (917)
..+.+|.+.|++++|+++ +++|+|||.|++|++||+...... .........+|...|.+++|+|++++|++|+.||+
T Consensus 376 ~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~--~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~ 453 (694)
T 3dm0_A 376 GTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKA--YGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGE 453 (694)
T ss_dssp EEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTC--SCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSE
T ss_pred hhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcc--cccccceecCCCCcEEEEEECCCCCEEEEEeCCCc
Confidence 457799999999999986 479999999999999999764211 11223456789999999999999999999999999
Q ss_pred EEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeEEEEe----ecCCceEEEEEeCCC---
Q psy3053 737 LIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCNK----VFEEKLLCLSWAGEE--- 809 (917)
Q Consensus 737 I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~tg~~i~~~----~~~~~i~~l~~s~~~--- 809 (917)
|++||+.++.....+. +|...|.+++|+|+++.|++++.|++|++||.......... .+...+.|++|++++
T Consensus 454 v~vwd~~~~~~~~~~~-~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~ 532 (694)
T 3dm0_A 454 LRLWDLAAGVSTRRFV-GHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQP 532 (694)
T ss_dssp EEEEETTTTEEEEEEE-CCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSC
T ss_pred EEEEECCCCcceeEEe-CCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCcc
Confidence 9999999999988887 89999999999999999999999999999998765444332 355679999999864
Q ss_pred EEEEEeCCCeEEEEECCCCEEEEEEecCCCceEEE--eecCCEEEEEeCCCeEEEEECcCCeEEEEecCCCCCEEEEEEc
Q psy3053 810 KVILGGALGMVYLVDLIQVQLLKQVRAHKDAVLSL--HFDNCTMLVGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWD 887 (917)
Q Consensus 810 ~lv~gs~dG~I~vwdl~~~~~i~~l~~h~~~V~si--s~dg~~Lasgs~DG~I~Iwdl~tg~~l~~l~~h~~~V~slafS 887 (917)
.+++|+.||.|++||+.+++....+.+|.+.|.++ ++++++|++|+.||.|++||+.+++.+..+.. ...|.+++|+
T Consensus 533 ~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~~-~~~v~~~~~s 611 (694)
T 3dm0_A 533 TIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEA-NSVIHALCFS 611 (694)
T ss_dssp EEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECCBC-SSCEEEEEEC
T ss_pred eEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEecC-CCcEEEEEEc
Confidence 68999999999999999999999999999999998 66899999999999999999999999888764 5689999999
Q ss_pred CCCCEEEEEeCCCcEEEEecCcc
Q psy3053 888 EKRKRLISGNLVGAPKLYATEFY 910 (917)
Q Consensus 888 pdg~~LaSgs~DG~V~IWdl~~~ 910 (917)
|++.+|++++ |+.|++||++..
T Consensus 612 p~~~~l~~~~-~~~i~iwd~~~~ 633 (694)
T 3dm0_A 612 PNRYWLCAAT-EHGIKIWDLESK 633 (694)
T ss_dssp SSSSEEEEEE-TTEEEEEETTTT
T ss_pred CCCcEEEEEc-CCCEEEEECCCC
Confidence 9998888776 456999999865
No 104
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.96 E-value=6.5e-29 Score=288.00 Aligned_cols=260 Identities=9% Similarity=0.089 Sum_probs=216.2
Q ss_pred ccceEEEEEeCCCCEEEEEecccEEEEEEeccCeeeEEeccCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCcc
Q psy3053 622 SMTLSSLCILPDNCTMLVGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMK 701 (917)
Q Consensus 622 ~~~V~sl~~spd~~~Lasgs~Dg~I~Iwdl~tg~~i~~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~ 701 (917)
...|.+++|+|||+++|+++.|++|+ |...++ .+.+|...|.+++|+|+| .++.+.+|+....
T Consensus 15 ~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~~---~l~gh~~~v~~V~FsPdg-------~~~~~~~~~~~~~----- 77 (588)
T 2j04_A 15 EDWKNNLTWARDGTLYLTTFPDISIG--QPKYAK---DINCNSKNLFHVKEFPLE-------FENKLDFELAQQN----- 77 (588)
T ss_dssp SSSSCCEEECTTSCEEEECSSSEEEE--EECCCS---CCSSBGGGTEEEEEECCC-------CCCTTTTSCCCSS-----
T ss_pred hccEEEEEECCCCCEEEEEcCCceee--cccccc---eecCCCccEEEEEECCCC-------CcceEEEEeCCCc-----
Confidence 46789999999999999999999999 755554 447999999999999988 5666666654322
Q ss_pred CCcceeeeccCCCceEEEEEeCCCCEEEEEECCCeEEEEECCCCeeeEEecCCCCC-----CeEEEEEecCCCEEEEEeC
Q psy3053 702 PSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGELIIWSLENHLMTQQLSDDINA-----SVNGVLFSEDGCRVLSCGN 776 (917)
Q Consensus 702 ~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~dG~I~iwDl~~~~~~~~l~~~h~~-----~V~~v~fspdg~~L~s~s~ 776 (917)
. .....+...|.+++|+|+|..||+++.||.|++||..+ .+..+. |.. .|.+++|||||++|++|+.
T Consensus 78 ---~-~~~~~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~--~~~~~~~~sv~svafSPDG~~LAsgs~ 149 (588)
T 2j04_A 78 ---G-LLNSQPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD--SKGNLSSRTYHCFEWNPIESSIVVGNE 149 (588)
T ss_dssp ---C-SSTTSCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECC--CSSCSTTTCEEEEEECSSSSCEEEEET
T ss_pred ---e-EeecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc--CCCccccccEEEEEEcCCCCEEEEEcC
Confidence 1 11224578899999999999999999999999999654 555544 333 6999999999999999999
Q ss_pred CCeEEEEECCCCe-------EEEEe-----ecCCceEEEEEeCCCEEEEEeCCCeEEEEECCCCEE---EEEE-ecCCCc
Q psy3053 777 NCMLNVYDLTTGM-------QVCNK-----VFEEKLLCLSWAGEEKVILGGALGMVYLVDLIQVQL---LKQV-RAHKDA 840 (917)
Q Consensus 777 Dg~I~iwDl~tg~-------~i~~~-----~~~~~i~~l~~s~~~~lv~gs~dG~I~vwdl~~~~~---i~~l-~~h~~~ 840 (917)
||+|++||+.++. .+..+ .|...|.+++|+|++ +++++.|+.|++||+.++.. ..++ .+|...
T Consensus 150 DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg-Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~ 228 (588)
T 2j04_A 150 DGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV-LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRK 228 (588)
T ss_dssp TSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE-EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSC
T ss_pred CCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc-EEEEeCCCeEEEEECCCCccccceeeecccccCc
Confidence 9999999999874 23443 244689999999999 99999999999999988773 4566 478899
Q ss_pred eEEEeecCCEEEEEeCCCeEEEEECcCCeEEEEecCCCCCEEEEEE--cCCCCEEEEEeCCCcEEEEecCc
Q psy3053 841 VLSLHFDNCTMLVGCWDSCVVIYDVECGRIVTELAGHEDAISCVAW--DEKRKRLISGNLVGAPKLYATEF 909 (917)
Q Consensus 841 V~sis~dg~~Lasgs~DG~I~Iwdl~tg~~l~~l~~h~~~V~slaf--Spdg~~LaSgs~DG~V~IWdl~~ 909 (917)
|.++++.|+.+|+++ +|+|++||+.+++......+|.+.|.+++| +|++..|++++.||+ ++|..+.
T Consensus 229 V~svaFsg~~LASa~-~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~d~ 297 (588)
T 2j04_A 229 ITDLKIVDYKVVLTC-PGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKESTILLMSNKTSY-KVLLEDE 297 (588)
T ss_dssp CCCEEEETTEEEEEC-SSEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCEEEEECSSCEE-EEEESSS
T ss_pred EEEEEEECCEEEEEe-CCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEeecc
Confidence 999977788999997 699999999988885555489999999999 999999999999999 9999873
No 105
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=99.96 E-value=9.5e-28 Score=273.30 Aligned_cols=261 Identities=13% Similarity=0.218 Sum_probs=216.4
Q ss_pred ccccCCccccceeeec-cCCcceEEEEEeCCCcEEEEEecCCceEEEeccCCceeeeeeccccceEEEEEeCCCCEEEEE
Q psy3053 562 NSWCDKSILEPLHFCH-SHKEAITAVAICGEGISVASVGRDAMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTMLVG 640 (917)
Q Consensus 562 ~~w~~~~~l~~~~~l~-~H~~~Vtsv~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~~~~~~~~V~sl~~spd~~~Lasg 640 (917)
.+|+..++. ....+. .|.+.|++++|+|+|++|++|+.||.|++||+.+++.+..+..|...|.+++| ++..+++|
T Consensus 116 ~lw~~~~~~-~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~ 192 (401)
T 4aez_A 116 YVWNADSGS-VSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSW--NRHVLSSG 192 (401)
T ss_dssp EEEETTTCC-EEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEE--ETTEEEEE
T ss_pred EEeeCCCCc-EeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEEEecCCCCceEEEEE--CCCEEEEE
Confidence 678866543 333443 48999999999999999999999999999999999999999999999999999 46799999
Q ss_pred ecccEEEEEEec-cCeeeEEeccCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEE
Q psy3053 641 CWDSCVVIYDVE-CGRIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCL 719 (917)
Q Consensus 641 s~Dg~I~Iwdl~-tg~~i~~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l 719 (917)
+.||.|++||+. .+.....+.+|.+.|.+++|+|++++|++|+.||.|++||+.++ ........|...|.++
T Consensus 193 ~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~-------~~~~~~~~~~~~v~~~ 265 (401)
T 4aez_A 193 SRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSS-------IPKFTKTNHNAAVKAV 265 (401)
T ss_dssp ETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCS-------SEEEEECCCSSCCCEE
T ss_pred cCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCC-------CccEEecCCcceEEEE
Confidence 999999999998 56778889999999999999999999999999999999999875 2344556789999999
Q ss_pred EEeCCC-CEEEEEE--CCCeEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEEe--CCCeEEEEECCCCeEEEEe
Q psy3053 720 AISKDN-NQLAVGT--EAGELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCG--NNCMLNVYDLTTGMQVCNK 794 (917)
Q Consensus 720 ~~spdg-~~Lasgs--~dG~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s--~Dg~I~iwDl~tg~~i~~~ 794 (917)
+|+|++ .++++|+ .||.|++||+.+++.+..+. +...|.+++|+|+++.+++++ .||.|++||+.++......
T Consensus 266 ~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~ 343 (401)
T 4aez_A 266 AWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVD--AGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQV 343 (401)
T ss_dssp EECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEE--CSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEE
T ss_pred EECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEe--CCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEE
Confidence 999977 4556654 79999999999999988886 667899999999999999954 8999999999987655432
Q ss_pred ---ecCCceEEEEEeCCC-EEEEEeCCCeEEEEECCCCEEEEEE
Q psy3053 795 ---VFEEKLLCLSWAGEE-KVILGGALGMVYLVDLIQVQLLKQV 834 (917)
Q Consensus 795 ---~~~~~i~~l~~s~~~-~lv~gs~dG~I~vwdl~~~~~i~~l 834 (917)
.+...+.+++|++++ .+++++.||.|++|++.+++.+...
T Consensus 344 ~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~~~~~~~~ 387 (401)
T 4aez_A 344 DIPAHDTRVLYSALSPDGRILSTAASDENLKFWRVYDGDHVKRP 387 (401)
T ss_dssp EEECCSSCCCEEEECTTSSEEEEECTTSEEEEEECCC-------
T ss_pred EecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCcccccc
Confidence 356678888888765 4667777888888888777665543
No 106
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.96 E-value=2.5e-29 Score=310.52 Aligned_cols=250 Identities=16% Similarity=0.183 Sum_probs=214.2
Q ss_pred eeeeccCCcceEEEEEeCCCcEEEEEecCCceEEEecc--CCceeeeeeccccceEEEEEeCC--CCEEEEEecccEEEE
Q psy3053 573 LHFCHSHKEAITAVAICGEGISVASVGRDAMLKIHSLK--TGRQERSAVLSSMTLSSLCILPD--NCTMLVGCWDSCVVI 648 (917)
Q Consensus 573 ~~~l~~H~~~Vtsv~fSpdg~~Lasgs~Dg~I~IWd~~--t~~~~~~~~~~~~~V~sl~~spd--~~~Lasgs~Dg~I~I 648 (917)
+..+.+|.++|++++|+|+|+++++|+.||+|++|++. +++....+.+|..+|.+++|+|+ ++.+++|+.||.|++
T Consensus 2 ~~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~v 81 (753)
T 3jro_A 2 VVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLI 81 (753)
T ss_dssp ------CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEE
T ss_pred eeecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEE
Confidence 35678999999999999999999999999999999998 55677888899999999999988 999999999999999
Q ss_pred EEeccCe--eeEEeccCCCceeEEEecCC--CCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeC-
Q psy3053 649 YDVECGR--IVTELAGHEDAISCVAWDEK--RKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISK- 723 (917)
Q Consensus 649 wdl~tg~--~i~~l~~H~~~Vt~l~~spd--~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp- 723 (917)
||+.+++ .+..+.+|.+.|++++|+|+ ++.+++|+.||+|++||+.++.. .......+|...|.+++|+|
T Consensus 82 wd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~-----~~~~~~~~~~~~v~~l~~~p~ 156 (753)
T 3jro_A 82 WKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGT-----TSPIIIDAHAIGVNSASWAPA 156 (753)
T ss_dssp EEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSC-----CCCEEEECCSSCEEEEEECCC
T ss_pred EECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCC-----cceeEeecCCCceEEEEecCc
Confidence 9999987 77888899999999999999 99999999999999999977521 22334567899999999999
Q ss_pred ------------CCCEEEEEECCCeEEEEECCCC----eeeEEecCCCCCCeEEEEEecC---CCEEEEEeCCCeEEEEE
Q psy3053 724 ------------DNNQLAVGTEAGELIIWSLENH----LMTQQLSDDINASVNGVLFSED---GCRVLSCGNNCMLNVYD 784 (917)
Q Consensus 724 ------------dg~~Lasgs~dG~I~iwDl~~~----~~~~~l~~~h~~~V~~v~fspd---g~~L~s~s~Dg~I~iwD 784 (917)
++..+++|+.||.|++||++++ .....+. +|...|.+++|+|+ +..+++++.||.|++||
T Consensus 157 ~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~-~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd 235 (753)
T 3jro_A 157 TIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLE-GHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWT 235 (753)
T ss_dssp C---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEEC-CCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEE
T ss_pred ccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeec-CCCCcEEEEEeccCCCCCCEEEEEecCCEEEEec
Confidence 5899999999999999999877 4445555 78999999999999 89999999999999999
Q ss_pred CCCCeE------EEEeecCCceEEEEEeCCC-EEEEEeCCCeEEEEECCCC
Q psy3053 785 LTTGMQ------VCNKVFEEKLLCLSWAGEE-KVILGGALGMVYLVDLIQV 828 (917)
Q Consensus 785 l~tg~~------i~~~~~~~~i~~l~~s~~~-~lv~gs~dG~I~vwdl~~~ 828 (917)
+.++.. .....+...+.+++|+|++ .+++|+.||.|++|++..+
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~~ 286 (753)
T 3jro_A 236 QDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLE 286 (753)
T ss_dssp ESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCSS
T ss_pred CCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCCC
Confidence 988632 1223356779999999876 4778899999999999854
No 107
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=99.96 E-value=2.6e-28 Score=271.13 Aligned_cols=261 Identities=13% Similarity=0.148 Sum_probs=215.0
Q ss_pred ccccCCccccceeeec-----cCCcceEEEEEeCC----CcEEEEEecCCceEEEeccCCceeeeeeccccceEEEEEeC
Q psy3053 562 NSWCDKSILEPLHFCH-----SHKEAITAVAICGE----GISVASVGRDAMLKIHSLKTGRQERSAVLSSMTLSSLCILP 632 (917)
Q Consensus 562 ~~w~~~~~l~~~~~l~-----~H~~~Vtsv~fSpd----g~~Lasgs~Dg~I~IWd~~t~~~~~~~~~~~~~V~sl~~sp 632 (917)
.+|+.... +.+..+. .|.+.|++++|+|+ |.+|++|+.||.|++||+.+++.+..+..|...|.+++|+|
T Consensus 47 ~vw~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~ 125 (366)
T 3k26_A 47 TLYECHSQ-GEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHP 125 (366)
T ss_dssp EEEEECGG-GCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEEESCCSCEEEEEECS
T ss_pred EEEEcCCC-cEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeeeecCCCCcEEEEEECC
Confidence 57775533 2333333 36788999999999 67999999999999999999999999999999999999999
Q ss_pred -CCCEEEEEecccEEEEEEeccCeeeEEe---ccCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCcc-------
Q psy3053 633 -DNCTMLVGCWDSCVVIYDVECGRIVTEL---AGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMK------- 701 (917)
Q Consensus 633 -d~~~Lasgs~Dg~I~Iwdl~tg~~i~~l---~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~------- 701 (917)
++..+++|+.||.|++||+.+++.+..+ .+|...|.+++|+|++++|++++.||.|++||+.++.....
T Consensus 126 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~ 205 (366)
T 3k26_A 126 RDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDY 205 (366)
T ss_dssp SCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTC
T ss_pred CCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEe
Confidence 8999999999999999999999998888 78999999999999999999999999999999976521000
Q ss_pred --------------CCcceeeeccCCCceEEEEEeCCCCEEEEEECCCeEEEEECCCCee--------------eEEecC
Q psy3053 702 --------------PSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGELIIWSLENHLM--------------TQQLSD 753 (917)
Q Consensus 702 --------------~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~dG~I~iwDl~~~~~--------------~~~l~~ 753 (917)
..........|...|.+++|+ ++++++++.||.|++||+.++.. +..+.
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~- 282 (366)
T 3k26_A 206 NPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFD- 282 (366)
T ss_dssp CGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEE-
T ss_pred cCCCCcccccceeeccCccccccCCcceEEEEEEc--CCEEEEEecCCEEEEEeCCCccccccccccCCcchheecccc-
Confidence 001112223488999999999 78999999999999999987643 55555
Q ss_pred CCCCCeEEEEEecC--CCEEEEEeCCCeEEEEECCCCeE----EEEee-c--CCceEEEEEeCCC-EEEEEeCCCeEEEE
Q psy3053 754 DINASVNGVLFSED--GCRVLSCGNNCMLNVYDLTTGMQ----VCNKV-F--EEKLLCLSWAGEE-KVILGGALGMVYLV 823 (917)
Q Consensus 754 ~h~~~V~~v~fspd--g~~L~s~s~Dg~I~iwDl~tg~~----i~~~~-~--~~~i~~l~~s~~~-~lv~gs~dG~I~vw 823 (917)
.|...|.+++|+|+ +++|++++.||.|++||+.+++. ..... + ...+.+++|++++ .+++++.||.|++|
T Consensus 283 ~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw 362 (366)
T 3k26_A 283 YSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRW 362 (366)
T ss_dssp CSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred ccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCccccceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEE
Confidence 78889999999999 99999999999999999998742 22333 2 5789999998765 57778888888888
Q ss_pred ECC
Q psy3053 824 DLI 826 (917)
Q Consensus 824 dl~ 826 (917)
|+.
T Consensus 363 d~~ 365 (366)
T 3k26_A 363 DRL 365 (366)
T ss_dssp EC-
T ss_pred Eec
Confidence 874
No 108
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.96 E-value=2.3e-27 Score=266.21 Aligned_cols=301 Identities=11% Similarity=0.136 Sum_probs=213.6
Q ss_pred cceeeeccCCcceEEEEEeCCCcEEEEEecCCceEEEeccCCceeeeeeccccceEEEEEeCCCCEE-EEEecccEEEEE
Q psy3053 571 EPLHFCHSHKEAITAVAICGEGISVASVGRDAMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTM-LVGCWDSCVVIY 649 (917)
Q Consensus 571 ~~~~~l~~H~~~Vtsv~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~~~~~~~~V~sl~~spd~~~L-asgs~Dg~I~Iw 649 (917)
+++....+|.+.|++++|+|||++|++|+.+| +++|++.+++.......+ .+..+++.++++.+ ++|+.|++|++|
T Consensus 10 ~~~~~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~d~~v~iW 86 (355)
T 3vu4_A 10 NPIVPENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQEMR--HLSKVRMLHRTNYVAFVTGVKEVVHIW 86 (355)
T ss_dssp ---------CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEEEECS--CCCEEEECTTSSEEEEECSSTTEEEEE
T ss_pred CCccccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeeeeecC--CeEEEEEcCCCCEEEEEECCccEEEEE
Confidence 45556789999999999999999999988775 789999887665543332 57788889888877 567788999999
Q ss_pred EeccCeeeEEeccCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEE
Q psy3053 650 DVECGRIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLA 729 (917)
Q Consensus 650 dl~tg~~i~~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~La 729 (917)
|..+++.+..+. |...|.+++++++ .++++ .|+.|++||+.+...... ... . +...+++++ ..++
T Consensus 87 d~~~~~~~~~~~-~~~~v~~v~~~~~--~~~~~-~~~~i~i~d~~~~~~~~~---~~~---~---~~~~~~~s~--~~la 151 (355)
T 3vu4_A 87 DDVKKQDVSRIK-VDAPVKDLFLSRE--FIVVS-YGDVISVFKFGNPWKRIT---DDI---R---FGGVCEFSN--GLLV 151 (355)
T ss_dssp ETTTTEEEEEEE-CSSCEEEEEECSS--EEEEE-ETTEEEEEESSTTCCBSS---CCE---E---EEEEEEEET--TEEE
T ss_pred ECCCCcEEEEEE-CCCceEEEEEcCC--EEEEE-EcCEEEEEECCCCceeeE---Eec---c---CCceEEEEc--cEEE
Confidence 999999998887 6779999999875 45544 488999999976511111 111 1 344566777 5666
Q ss_pred E--EECCCeEEEEECCCCe----------------eeEEecCCCCCCeEEEEEecCCCEEEEEeCCCe-EEEEECCCCeE
Q psy3053 730 V--GTEAGELIIWSLENHL----------------MTQQLSDDINASVNGVLFSEDGCRVLSCGNNCM-LNVYDLTTGMQ 790 (917)
Q Consensus 730 s--gs~dG~I~iwDl~~~~----------------~~~~l~~~h~~~V~~v~fspdg~~L~s~s~Dg~-I~iwDl~tg~~ 790 (917)
+ |+.+|.|++||+.++. .+..+. +|.+.|.+++|+|+|++|++|+.|++ |++||+++++.
T Consensus 152 ~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~-~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~ 230 (355)
T 3vu4_A 152 YSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIK-AHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVL 230 (355)
T ss_dssp EEESSCTTCEEEEECCC------------------CCEEEC-CCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCE
T ss_pred EeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEE-ccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcE
Confidence 6 5889999999999865 155565 89999999999999999999999998 99999999998
Q ss_pred EEEee---cCCceEEEEEeCCC-EEEEEeCCCeEEEEECCCCEEEE--EEecCCCceEEEeecCCEEEEEeCCCeEEEEE
Q psy3053 791 VCNKV---FEEKLLCLSWAGEE-KVILGGALGMVYLVDLIQVQLLK--QVRAHKDAVLSLHFDNCTMLVGCWDSCVVIYD 864 (917)
Q Consensus 791 i~~~~---~~~~i~~l~~s~~~-~lv~gs~dG~I~vwdl~~~~~i~--~l~~h~~~V~sis~dg~~Lasgs~DG~I~Iwd 864 (917)
+..+. +...+.+++|+|++ .+++++.||.|++||+..+.... .+..+ +. ..++. ..-.+..+.
T Consensus 231 ~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~------~~--~~~~~---~~~~~~~~~ 299 (355)
T 3vu4_A 231 VREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGW------IN--MKYFQ---SEWSLCNFK 299 (355)
T ss_dssp EEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTT------EE--CCCCC---CSSCSEEEE
T ss_pred EEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccce------ee--ccccc---cccceeEEE
Confidence 88776 77889999998865 46778888899999887652111 11100 00 00000 000011111
Q ss_pred CcCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCc
Q psy3053 865 VECGRIVTELAGHEDAISCVAWDEKRKRLISGNLVGAPKLYATEF 909 (917)
Q Consensus 865 l~tg~~l~~l~~h~~~V~slafSpdg~~LaSgs~DG~V~IWdl~~ 909 (917)
+. ..+......++|+++++.|++++.||.+++|++..
T Consensus 300 ~~--------~~~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~~ 336 (355)
T 3vu4_A 300 LS--------VDKHVRGCKIAWISESSLVVVWPHTRMIETFKVVF 336 (355)
T ss_dssp CC--------CCTTCCCCEEEESSSSEEEEEETTTTEEEEEEEEE
T ss_pred ec--------cCCCCCceEEEEeCCCCEEEEEeCCCeEEEEEEEc
Confidence 11 11233456799999999999999999999999853
No 109
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.96 E-value=4.8e-28 Score=267.26 Aligned_cols=248 Identities=15% Similarity=0.158 Sum_probs=213.3
Q ss_pred EeccCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCC-EEEEEECCCeE
Q psy3053 659 ELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNN-QLAVGTEAGEL 737 (917)
Q Consensus 659 ~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~-~Lasgs~dG~I 737 (917)
...+|.+.|++++|+|++++|++|+.||.|++||+.++. ..........|...|.+++|+|+++ .+++|+.||.|
T Consensus 6 ~~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~----~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i 81 (342)
T 1yfq_A 6 IEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQA----KNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEI 81 (342)
T ss_dssp CSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTT----TEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCE
T ss_pred cccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCC----ccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeE
Confidence 345899999999999999999999999999999987651 1112344568899999999999999 99999999999
Q ss_pred EEEEC-CCCeeeEEecCC--CCCCeEEEEEecCCCEEEEEeCCCeEEEEECCC---------CeEEEEeecCCceEEEEE
Q psy3053 738 IIWSL-ENHLMTQQLSDD--INASVNGVLFSEDGCRVLSCGNNCMLNVYDLTT---------GMQVCNKVFEEKLLCLSW 805 (917)
Q Consensus 738 ~iwDl-~~~~~~~~l~~~--h~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~t---------g~~i~~~~~~~~i~~l~~ 805 (917)
++||+ .+++. ..+. . |...|.+++|+| +..+++++.|+.|++||+++ ++.+....+...+.++++
T Consensus 82 ~~wd~~~~~~~-~~~~-~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 158 (342)
T 1yfq_A 82 LKVDLIGSPSF-QALT-NNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDT 158 (342)
T ss_dssp EEECSSSSSSE-EECB-SCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEE
T ss_pred EEEEeccCCce-Eecc-ccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEeeCCceEEEEe
Confidence 99999 87755 4555 6 899999999999 99999999999999999987 666666668889999999
Q ss_pred eCCCEEEEEeCCCeEEEEECCC-CE--EEEEEecCCCceEEE--ee-cCCEEEEEeCCCeEEEEECcCC------eEEEE
Q psy3053 806 AGEEKVILGGALGMVYLVDLIQ-VQ--LLKQVRAHKDAVLSL--HF-DNCTMLVGCWDSCVVIYDVECG------RIVTE 873 (917)
Q Consensus 806 s~~~~lv~gs~dG~I~vwdl~~-~~--~i~~l~~h~~~V~si--s~-dg~~Lasgs~DG~I~Iwdl~tg------~~l~~ 873 (917)
++++ +++++.+|.|++||+.+ +. .......|...+.++ ++ +++++++|+.||.|++|+++.+ +....
T Consensus 159 ~~~~-l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~ 237 (342)
T 1yfq_A 159 NSSR-LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFA 237 (342)
T ss_dssp CSSE-EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEE
T ss_pred cCCc-EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCccccccccee
Confidence 9986 99999999999999988 44 334455688889888 56 7899999999999999999887 77778
Q ss_pred ecCCCC---------CEEEEEEcCCCCEEEEEeCCCcEEEEecCcc-eEEE
Q psy3053 874 LAGHED---------AISCVAWDEKRKRLISGNLVGAPKLYATEFY-LLYV 914 (917)
Q Consensus 874 l~~h~~---------~V~slafSpdg~~LaSgs~DG~V~IWdl~~~-ll~~ 914 (917)
+.+|.. .|.+++|+|++++|++|+.||.|++||+... .+..
T Consensus 238 ~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~ 288 (342)
T 1yfq_A 238 FRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKN 288 (342)
T ss_dssp EECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEE
T ss_pred eecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhh
Confidence 888765 9999999999999999999999999999854 4443
No 110
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.96 E-value=2.8e-28 Score=277.47 Aligned_cols=253 Identities=14% Similarity=0.134 Sum_probs=182.3
Q ss_pred EEEeCCCCEEEEEecccEEEEEEeccCeee-----EEeccCCCceeEEEecC--------CCCEEEEEECCCeEEEEeCC
Q psy3053 628 LCILPDNCTMLVGCWDSCVVIYDVECGRIV-----TELAGHEDAISCVAWDE--------KRKRLISGSWDCTVRVWNTG 694 (917)
Q Consensus 628 l~~spd~~~Lasgs~Dg~I~Iwdl~tg~~i-----~~l~~H~~~Vt~l~~sp--------d~~~L~Sgs~DgtI~vWdl~ 694 (917)
..+.+++..+++|+.|++|++||.+++... ..+.+|.+.|.+++|+| ++++|+|||.|++|++||+.
T Consensus 95 ~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~ 174 (393)
T 4gq1_A 95 NSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLT 174 (393)
T ss_dssp --CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEE
T ss_pred eecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECC
Confidence 334556778999999999999999988653 34679999999999997 78999999999999999987
Q ss_pred CCCCCccCCcceeeeccCCCceEEEEEeCCC-CEEEEEECCCeEEEEECCCCeeeEEec---------------------
Q psy3053 695 ASWSHMKPSKSLVSQLDLDNRIKCLAISKDN-NQLAVGTEAGELIIWSLENHLMTQQLS--------------------- 752 (917)
Q Consensus 695 ~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg-~~Lasgs~dG~I~iwDl~~~~~~~~l~--------------------- 752 (917)
++ ........|...+.+++|+|++ .+|++|+.||+|++||+++++......
T Consensus 175 ~~-------~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~ 247 (393)
T 4gq1_A 175 DE-------GPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNT 247 (393)
T ss_dssp TT-------EEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC--
T ss_pred CC-------ceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceee
Confidence 65 3455667889999999999987 589999999999999999876543321
Q ss_pred ---CCCCCCeEEEEEe-cCCCEEEEEeCCCeEEEEECCCCeEEEEee-cCCceEEEEEeCCCEEEEEeCCCeEEEEECCC
Q psy3053 753 ---DDINASVNGVLFS-EDGCRVLSCGNNCMLNVYDLTTGMQVCNKV-FEEKLLCLSWAGEEKVILGGALGMVYLVDLIQ 827 (917)
Q Consensus 753 ---~~h~~~V~~v~fs-pdg~~L~s~s~Dg~I~iwDl~tg~~i~~~~-~~~~i~~l~~s~~~~lv~gs~dG~I~vwdl~~ 827 (917)
.+|...+.++.|+ ++|+.+++++.|+++++||+.++.....+. +...+..+.+.++
T Consensus 248 ~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~------------------- 308 (393)
T 4gq1_A 248 CHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPN------------------- 308 (393)
T ss_dssp ----CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCS-------------------
T ss_pred eecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccc-------------------
Confidence 1456678888887 688889999999999999987765443221 1112222222222
Q ss_pred CEEEEEEecCCCceEEE-e--ecCCEEEEEeCCCeEEEEECcCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEE
Q psy3053 828 VQLLKQVRAHKDAVLSL-H--FDNCTMLVGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGNLVGAPKL 904 (917)
Q Consensus 828 ~~~i~~l~~h~~~V~si-s--~dg~~Lasgs~DG~I~Iwdl~tg~~l~~l~~h~~~V~slafSpdg~~LaSgs~DG~V~I 904 (917)
......+...+.++ . .++.++++|+.||.|++||+.+++......+|..+|.+++|||||++||+++.|| +.+
T Consensus 309 ---~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~~V~svafspdG~~LA~as~~G-v~l 384 (393)
T 4gq1_A 309 ---VQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGMPIVDFCWHQDGSHLAIATEGS-VLL 384 (393)
T ss_dssp ---EEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEECSSCEEEEEECTTSSEEEEEESSE-EEE
T ss_pred ---cccccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEecCCCCcEEEEEEcCCCCEEEEEeCCC-eEE
Confidence 11222222222222 2 2555778888999999999999998888888999999999999999999998776 777
Q ss_pred EecCcc
Q psy3053 905 YATEFY 910 (917)
Q Consensus 905 Wdl~~~ 910 (917)
|.+.++
T Consensus 385 vrL~gf 390 (393)
T 4gq1_A 385 TRLMGF 390 (393)
T ss_dssp EEEGGG
T ss_pred EEEeCc
Confidence 776543
No 111
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.96 E-value=5.2e-28 Score=269.45 Aligned_cols=279 Identities=11% Similarity=0.065 Sum_probs=215.0
Q ss_pred EEEeCCCcEEEEEecCCceEEEeccCCceeeeeeccccceEEEEEeCCCCEEEEEecccEEEEEEec---------cCee
Q psy3053 586 VAICGEGISVASVGRDAMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTMLVGCWDSCVVIYDVE---------CGRI 656 (917)
Q Consensus 586 v~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~~~~~~~~V~sl~~spd~~~Lasgs~Dg~I~Iwdl~---------tg~~ 656 (917)
..+.+++..+++|+.||+|++||+.+++.+..+. ...|.++.++|+ +++|+.|++|++|+.. +++.
T Consensus 42 ~~~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~--~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~~ 116 (343)
T 3lrv_A 42 KSMYYDKWVCMCRCEDGALHFTQLKDSKTITTIT--TPNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILDSKTNKV 116 (343)
T ss_dssp SSSSEEEEEEEEEEETTEEEEEEESSSSCEEEEE--EECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEETTTCCE
T ss_pred hhhcCCCCEEEEECCCCcEEEEECCCCcEEEEEe--cCCceeeeeCCc---eEEecCCCeEEEEEccCceEEeecCCcce
Confidence 3455788999999999999999999998887776 456788888888 9999999999999665 4554
Q ss_pred eEEec-cCCCceeEEEecC--CCCEEEEEECCCeEEEEeCCCCCCCccCCcceee-eccCCCceEEEEEeCCCCEEEEEE
Q psy3053 657 VTELA-GHEDAISCVAWDE--KRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVS-QLDLDNRIKCLAISKDNNQLAVGT 732 (917)
Q Consensus 657 i~~l~-~H~~~Vt~l~~sp--d~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~-~~~h~~~V~~l~~spdg~~Lasgs 732 (917)
+..+. +|.+.|.+++|+| +++++++|+.||+|++||+.++. .... ...+...+.+++|+|++.++++|+
T Consensus 117 ~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~-------~~~~~~~~~~~~i~~~~~~pdg~~lasg~ 189 (343)
T 3lrv_A 117 LREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDS-------QYIVHSAKSDVEYSSGVLHKDSLLLALYS 189 (343)
T ss_dssp EEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSC-------EEEEECCCSSCCCCEEEECTTSCEEEEEC
T ss_pred eEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCc-------EEEEEecCCCCceEEEEECCCCCEEEEEc
Confidence 44443 6888999999999 99999999999999999998762 2221 234566799999999999999999
Q ss_pred CCCeEEEEECCCCeee-EEecCCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCceEEEEEeCCCEE
Q psy3053 733 EAGELIIWSLENHLMT-QQLSDDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCNKVFEEKLLCLSWAGEEKV 811 (917)
Q Consensus 733 ~dG~I~iwDl~~~~~~-~~l~~~h~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~tg~~i~~~~~~~~i~~l~~s~~~~l 811 (917)
.||.|++||+++++.. ..+...|.+.|.+++|+|+|.+|++++ |+.|++||+++++....+... .
T Consensus 190 ~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~~~~--------~----- 255 (343)
T 3lrv_A 190 PDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAYPTY--------T----- 255 (343)
T ss_dssp TTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBSSCCC--------B-----
T ss_pred CCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcceeeccc--------c-----
Confidence 9999999999999887 777744899999999999999999999 559999999876432211100 0
Q ss_pred EEEeCCCeEEEEECCCCEEEEEEecCCCceEEEeecCCEEEEEeC-CCeEEEEECcCCeEEEEecCCCCCEEEEEEcC--
Q psy3053 812 ILGGALGMVYLVDLIQVQLLKQVRAHKDAVLSLHFDNCTMLVGCW-DSCVVIYDVECGRIVTELAGHEDAISCVAWDE-- 888 (917)
Q Consensus 812 v~gs~dG~I~vwdl~~~~~i~~l~~h~~~V~sis~dg~~Lasgs~-DG~I~Iwdl~tg~~l~~l~~h~~~V~slafSp-- 888 (917)
. ...... ....+++++|++|++++. |+.|++|++.++...... .++..++|++
T Consensus 256 ----------------~---~~~~~~-~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~~~~~----~~~~~~~~~~~~ 311 (343)
T 3lrv_A 256 ----------------I---PEFKTG-TVTYDIDDSGKNMIAYSNESNSLTIYKFDKKTKNWTK----DEESALCLQSDT 311 (343)
T ss_dssp ----------------C--------C-CEEEEECTTSSEEEEEETTTTEEEEEEECTTTCSEEE----EEEEECCC----
T ss_pred ----------------c---cccccc-ceEEEECCCCCEEEEecCCCCcEEEEEEcccccceEe----cCceeEecCccc
Confidence 0 000000 022344778999999988 999999998665433322 5678889998
Q ss_pred -CCCEEEEEeCCCcEEEEecCcceEEE
Q psy3053 889 -KRKRLISGNLVGAPKLYATEFYLLYV 914 (917)
Q Consensus 889 -dg~~LaSgs~DG~V~IWdl~~~ll~~ 914 (917)
++..+++++.||.+.++-..+.....
T Consensus 312 ~~~~~l~~~~~d~~~~~~~~~~~~~~i 338 (343)
T 3lrv_A 312 ADFTDMDVVCGDGGIAAILKTNDSFNI 338 (343)
T ss_dssp CCCCEEEEEEETTEEEEEEECSSEEEE
T ss_pred cccceeEEEecCCceEEEEecCCeEeE
Confidence 88999999999999998776554443
No 112
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.96 E-value=7.4e-28 Score=273.93 Aligned_cols=261 Identities=14% Similarity=0.195 Sum_probs=219.3
Q ss_pred ccccCCccc---cceeeeccCCcceEEEEEeC-CCcEEEEEecCCceEEEeccCC-------ceeeeeeccccceEEEEE
Q psy3053 562 NSWCDKSIL---EPLHFCHSHKEAITAVAICG-EGISVASVGRDAMLKIHSLKTG-------RQERSAVLSSMTLSSLCI 630 (917)
Q Consensus 562 ~~w~~~~~l---~~~~~l~~H~~~Vtsv~fSp-dg~~Lasgs~Dg~I~IWd~~t~-------~~~~~~~~~~~~V~sl~~ 630 (917)
.+|+..... .....+.+|.+.|++++|+| ++++|++|+.||+|++|++.++ +.+..+.+|...|.+++|
T Consensus 60 ~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 139 (402)
T 2aq5_A 60 LVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAW 139 (402)
T ss_dssp EEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEE
T ss_pred EEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEE
Confidence 467643221 34566889999999999999 9999999999999999999987 567788899999999999
Q ss_pred eCCC-CEEEEEecccEEEEEEeccCeeeEEe--ccCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCccee
Q psy3053 631 LPDN-CTMLVGCWDSCVVIYDVECGRIVTEL--AGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLV 707 (917)
Q Consensus 631 spd~-~~Lasgs~Dg~I~Iwdl~tg~~i~~l--~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~ 707 (917)
+|++ .++++|+.||.|++||+.+++.+..+ .+|.+.|++++|+|++++|++++.||.|++||++++ ....
T Consensus 140 ~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~-------~~~~ 212 (402)
T 2aq5_A 140 HPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKG-------TVVA 212 (402)
T ss_dssp CSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTT-------EEEE
T ss_pred CcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCC-------ceee
Confidence 9998 69999999999999999999999999 889999999999999999999999999999999876 2233
Q ss_pred ee-ccCCCc-eEEEEEeCCCCEEEEE---ECCCeEEEEECCCCee-eEEecCCCCCCeEEEEEecCCCEEEEEe-CCCeE
Q psy3053 708 SQ-LDLDNR-IKCLAISKDNNQLAVG---TEAGELIIWSLENHLM-TQQLSDDINASVNGVLFSEDGCRVLSCG-NNCML 780 (917)
Q Consensus 708 ~~-~~h~~~-V~~l~~spdg~~Lasg---s~dG~I~iwDl~~~~~-~~~l~~~h~~~V~~v~fspdg~~L~s~s-~Dg~I 780 (917)
.. ..|.+. +.+++|+|++.++++| +.||.|++||++++.. .......+...+.+++|+|+++.+++++ .||.|
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i 292 (402)
T 2aq5_A 213 EKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSI 292 (402)
T ss_dssp EEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTCSCE
T ss_pred eeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeE
Confidence 33 456655 8999999999999999 7899999999998654 3333335778899999999999997554 79999
Q ss_pred EEEECCCCe----EEEEeecCCceEEEEEeCCCEEEEEeCCCeEEEEECCCCEE
Q psy3053 781 NVYDLTTGM----QVCNKVFEEKLLCLSWAGEEKVILGGALGMVYLVDLIQVQL 830 (917)
Q Consensus 781 ~iwDl~tg~----~i~~~~~~~~i~~l~~s~~~~lv~gs~dG~I~vwdl~~~~~ 830 (917)
++||+.+++ .+....+...+.+++|+|++.+++ +.++.+++|++.++..
T Consensus 293 ~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~-s~~~~~~~~~l~~~~~ 345 (402)
T 2aq5_A 293 RYFEITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEV-NKCEIARFYKLHERKC 345 (402)
T ss_dssp EEEEECSSTTCEEEEEEECCSSCCSEEEECCGGGSCG-GGTEEEEEEEEETTEE
T ss_pred EEEEecCCCcceEeecccccCCcccceEEecccccce-ecceeEEEEEcCCCcE
Confidence 999999887 233344568899999999877655 4677999999987654
No 113
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.96 E-value=2.1e-26 Score=263.54 Aligned_cols=285 Identities=14% Similarity=0.138 Sum_probs=239.5
Q ss_pred cceeeeccCCcceEEEEEeCCCcEEEEEecCCceEEEeccCCceee-----eeeccccceEEEEEeCCCCEEEEEecccE
Q psy3053 571 EPLHFCHSHKEAITAVAICGEGISVASVGRDAMLKIHSLKTGRQER-----SAVLSSMTLSSLCILPDNCTMLVGCWDSC 645 (917)
Q Consensus 571 ~~~~~l~~H~~~Vtsv~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~-----~~~~~~~~V~sl~~spd~~~Lasgs~Dg~ 645 (917)
+.+..+..+. .+.+++|+|++.++++++.|+.|++||+.+++... .+..|...|.+++|++++..+++++.|+.
T Consensus 114 ~~~~~~~~~~-~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~ 192 (433)
T 3bws_A 114 RFISRFKTGF-QPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANA 192 (433)
T ss_dssp EEEEEEECSS-CBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTE
T ss_pred eEEEEEcCCC-CceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCE
Confidence 4455555554 45699999988888888889999999999998876 34467788999999999999999999999
Q ss_pred EEEEEeccCeeeEEeccCCCceeEEEecCCCCEEEEEE-CCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCC
Q psy3053 646 VVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGS-WDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKD 724 (917)
Q Consensus 646 I~Iwdl~tg~~i~~l~~H~~~Vt~l~~spd~~~L~Sgs-~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd 724 (917)
|++||+++++.+..+..|...+.+++|+|+++.+++++ .|+.|++||+.++ ...........+.+++|+|+
T Consensus 193 v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~--------~~~~~~~~~~~~~~~~~~~~ 264 (433)
T 3bws_A 193 VHVFDLKTLAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTK--------LEIRKTDKIGLPRGLLLSKD 264 (433)
T ss_dssp EEEEETTTCCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTT--------EEEEECCCCSEEEEEEECTT
T ss_pred EEEEECCCceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCC--------cEEEEecCCCCceEEEEcCC
Confidence 99999999999999999999999999999999885544 7999999999765 23333445567999999999
Q ss_pred CCEEEEEE--------CCCeEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEE-EEEeCCCeEEEEECCCCeEEEEee
Q psy3053 725 NNQLAVGT--------EAGELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRV-LSCGNNCMLNVYDLTTGMQVCNKV 795 (917)
Q Consensus 725 g~~Lasgs--------~dG~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L-~s~s~Dg~I~iwDl~tg~~i~~~~ 795 (917)
++.+++++ .||.|++||+.+++....+. +...+.+++|+|+++.+ ++++.|+.|++||+.+++......
T Consensus 265 g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~--~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~ 342 (433)
T 3bws_A 265 GKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIG--PPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIP 342 (433)
T ss_dssp SSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEE--EEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred CCEEEEEECCCCccccCCCeEEEEECCCCcEEeecc--CCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEec
Confidence 99999888 58899999999998877764 55688999999999755 566889999999999999988888
Q ss_pred cCCceEEEEEeCCCE-EEEEeC---------------CCeEEEEECCCCEEEEEEecCCCceEEE--eecCCEEEEEeC-
Q psy3053 796 FEEKLLCLSWAGEEK-VILGGA---------------LGMVYLVDLIQVQLLKQVRAHKDAVLSL--HFDNCTMLVGCW- 856 (917)
Q Consensus 796 ~~~~i~~l~~s~~~~-lv~gs~---------------dG~I~vwdl~~~~~i~~l~~h~~~V~si--s~dg~~Lasgs~- 856 (917)
+...+.++++++++. +++++. ||.|++||+.+++.+..+..+ ..+.++ +++|++|++++.
T Consensus 343 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~ 421 (433)
T 3bws_A 343 VFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEAG-NQPTGLDVSPDNRYLVISDFL 421 (433)
T ss_dssp CSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEECS-SSEEEEEECTTSCEEEEEETT
T ss_pred CCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecCC-CCCceEEEcCCCCEEEEEECC
Confidence 888999999998874 666655 479999999999999888764 456666 678999988875
Q ss_pred CCeEEEEECcC
Q psy3053 857 DSCVVIYDVEC 867 (917)
Q Consensus 857 DG~I~Iwdl~t 867 (917)
|+.|++|+++.
T Consensus 422 d~~i~v~~~~~ 432 (433)
T 3bws_A 422 DHQIRVYRRDG 432 (433)
T ss_dssp TTEEEEEEETT
T ss_pred CCeEEEEEecC
Confidence 99999999863
No 114
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=99.96 E-value=1.9e-27 Score=272.95 Aligned_cols=256 Identities=11% Similarity=0.189 Sum_probs=206.2
Q ss_pred cccceEEEEEeCCCCEEEEEecccEEEEEEeccCe-----------eeEEeccCC------------CceeEEEecCCC-
Q psy3053 621 SSMTLSSLCILPDNCTMLVGCWDSCVVIYDVECGR-----------IVTELAGHE------------DAISCVAWDEKR- 676 (917)
Q Consensus 621 ~~~~V~sl~~spd~~~Lasgs~Dg~I~Iwdl~tg~-----------~i~~l~~H~------------~~Vt~l~~spd~- 676 (917)
+...|.+++|+|++++||+|+.||.|++|++.+++ ....+.+|. +.|++++|+|++
T Consensus 27 ~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~ 106 (447)
T 3dw8_B 27 EADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKN 106 (447)
T ss_dssp GGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCS
T ss_pred ccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCCC
Confidence 56789999999999999999999999999999877 578889998 889999999998
Q ss_pred -CEEEEEECCCeEEEEeCCCCCCCcc------------------C--C------------c-ceeeeccCCCceEEEEEe
Q psy3053 677 -KRLISGSWDCTVRVWNTGASWSHMK------------------P--S------------K-SLVSQLDLDNRIKCLAIS 722 (917)
Q Consensus 677 -~~L~Sgs~DgtI~vWdl~~~~~~~~------------------~--~------------~-~~~~~~~h~~~V~~l~~s 722 (917)
..|++++.||+|++||+.++..... . . . ......+|...|.+++|+
T Consensus 107 ~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~ 186 (447)
T 3dw8_B 107 AAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISIN 186 (447)
T ss_dssp SSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEEC
T ss_pred cceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEEc
Confidence 7999999999999999865311000 0 0 0 001135799999999999
Q ss_pred CCCCEEEEEECCCeEEEEECCC-CeeeEEe------cCCCCCCeEEEEEecCC-CEEEEEeCCCeEEEEECCCCeE----
Q psy3053 723 KDNNQLAVGTEAGELIIWSLEN-HLMTQQL------SDDINASVNGVLFSEDG-CRVLSCGNNCMLNVYDLTTGMQ---- 790 (917)
Q Consensus 723 pdg~~Lasgs~dG~I~iwDl~~-~~~~~~l------~~~h~~~V~~v~fspdg-~~L~s~s~Dg~I~iwDl~tg~~---- 790 (917)
|+++.+++| .||.|++||+++ +.....+ ...|...|.+++|+|++ ..+++++.||.|++||+++++.
T Consensus 187 ~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 265 (447)
T 3dw8_B 187 SDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRH 265 (447)
T ss_dssp TTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCTT
T ss_pred CCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccccce
Confidence 999999998 799999999994 4444422 23788999999999998 9999999999999999998875
Q ss_pred EEEeecC-C------------ceEEEEEeCCCE-EEEEeCCCeEEEEECCC-CEEEEEEecCCCce--------------
Q psy3053 791 VCNKVFE-E------------KLLCLSWAGEEK-VILGGALGMVYLVDLIQ-VQLLKQVRAHKDAV-------------- 841 (917)
Q Consensus 791 i~~~~~~-~------------~i~~l~~s~~~~-lv~gs~dG~I~vwdl~~-~~~i~~l~~h~~~V-------------- 841 (917)
...+... . .+.+++|++++. +++++. |.|++||+.+ ++++..+.+|...+
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~ 344 (447)
T 3dw8_B 266 SKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCIFD 344 (447)
T ss_dssp CEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSGGGC
T ss_pred eeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeecccccccccccccccccccc
Confidence 4444333 2 899999998875 555566 9999999997 88888888886422
Q ss_pred ---EEEeecCCEEEEEeCCCeEEEEECcCCeEEEEecCCCC
Q psy3053 842 ---LSLHFDNCTMLVGCWDSCVVIYDVECGRIVTELAGHED 879 (917)
Q Consensus 842 ---~sis~dg~~Lasgs~DG~I~Iwdl~tg~~l~~l~~h~~ 879 (917)
.++++++++|++|+.||.|++||+.+++.+ .+.+|..
T Consensus 345 ~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~-~~~~~~~ 384 (447)
T 3dw8_B 345 KFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDI-TLEASRE 384 (447)
T ss_dssp CCCEEECTTSSEEEEECSTTEEEEEETTTCCEE-EEECCST
T ss_pred ceEEEECCCCCEEEEeccCCEEEEEEcCCCcce-eeeeccc
Confidence 456889999999999999999999998876 4444543
No 115
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.96 E-value=1.7e-26 Score=252.66 Aligned_cols=289 Identities=10% Similarity=0.096 Sum_probs=216.2
Q ss_pred ccceeeeccCCcc----eEEEEEeCCCc---EEEEEecCCceEEEeccCC---ceeeeeeccccceEEEEEeCCCCEEEE
Q psy3053 570 LEPLHFCHSHKEA----ITAVAICGEGI---SVASVGRDAMLKIHSLKTG---RQERSAVLSSMTLSSLCILPDNCTMLV 639 (917)
Q Consensus 570 l~~~~~l~~H~~~----Vtsv~fSpdg~---~Lasgs~Dg~I~IWd~~t~---~~~~~~~~~~~~V~sl~~spd~~~Las 639 (917)
++.+..++.-.+. +.++-|-..|- -+++++ ...|++|+..++ +.++++.+|..+|..+++.||..-|++
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 103 (356)
T 2w18_A 25 LQLVSELKNPSGSCSVDVSAMFWERAGCKEPCIITAC-EDVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVC 103 (356)
T ss_dssp EEEEEEECCCCSSCEEEEEEEEEC----CEEEEEEEE-SSEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEE
T ss_pred eeeeehhcCCCCCeEEEEeeeeeccCCCCccEEEEec-cceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceee
Confidence 4555555544332 34455544442 455555 678999999998 789999999999999999998765554
Q ss_pred EecccEEEEEEeccCeeeEEeccCCCceeEEEecCC----CCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCc
Q psy3053 640 GCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEK----RKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNR 715 (917)
Q Consensus 640 gs~Dg~I~Iwdl~tg~~i~~l~~H~~~Vt~l~~spd----~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~ 715 (917)
..- | .-+...|.+++++|+ ++.+++++.+ +++|++.+
T Consensus 104 ~~~-----------~------~~~~~~v~sla~spd~~~~~~~l~s~g~~--~~v~~l~~-------------------- 144 (356)
T 2w18_A 104 VAL-----------G------NLEIREIRALFCSSDDESEKQVLLKSGNI--KAVLGLTK-------------------- 144 (356)
T ss_dssp EEE-----------C------SSSEEEEEEECC------CCEEEEEEEEE--EEEEEETT--------------------
T ss_pred eee-----------c------cccccceEEEEECCCccccccEEEeCCCe--EEEEecCC--------------------
Confidence 321 1 125568999999999 9999998854 77786532
Q ss_pred eEEEEEeCCCCEEEEEE--CCCeEEEEEC-CCCeeeEEecCCCCCCeEEEEEec---CCCEEEEEeCCCeEEEEECCCCe
Q psy3053 716 IKCLAISKDNNQLAVGT--EAGELIIWSL-ENHLMTQQLSDDINASVNGVLFSE---DGCRVLSCGNNCMLNVYDLTTGM 789 (917)
Q Consensus 716 V~~l~~spdg~~Lasgs--~dG~I~iwDl-~~~~~~~~l~~~h~~~V~~v~fsp---dg~~L~s~s~Dg~I~iwDl~tg~ 789 (917)
++++.+++ .|+.|++|++ .+++.+..+. .|...+..++|++ ++..|++++.|++|++||+.+|+
T Consensus 145 ---------g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~-~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk 214 (356)
T 2w18_A 145 ---------RRLVSSSGTLSDQQVEVMTFAEDGGGKENQF-LMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQ 214 (356)
T ss_dssp ---------TEEEEEESSSTTCEEEEEEECTTSCEEEEEE-ECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCC
T ss_pred ---------CcEEEecccCCCCcEEEEEECCCCceeeeec-cCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCc
Confidence 33333322 4677777777 3366555555 7888899999999 78999999999999999999999
Q ss_pred EEEEeec----CCceEEEEEeCCCEE-------------EEEeCCCeEEEEECCCCEEEEEE-----ecCCCceEEEeec
Q psy3053 790 QVCNKVF----EEKLLCLSWAGEEKV-------------ILGGALGMVYLVDLIQVQLLKQV-----RAHKDAVLSLHFD 847 (917)
Q Consensus 790 ~i~~~~~----~~~i~~l~~s~~~~l-------------v~gs~dG~I~vwdl~~~~~i~~l-----~~h~~~V~sis~d 847 (917)
.+..+.. ...+.+++++|++.+ ++|+.|++|++||..+++.+..+ .+|...+.+.+.+
T Consensus 215 ~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~s 294 (356)
T 2w18_A 215 LLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDVK 294 (356)
T ss_dssp EEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEEE
T ss_pred EEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEccccC
Confidence 9888753 235677788888764 45778999999999999988765 3677777777778
Q ss_pred CCEEEEEeCCCeEEEEECcCCeEEEEecCCCCCEE-EEEEcCCCCEEEEEeCCCcEEEEecC
Q psy3053 848 NCTMLVGCWDSCVVIYDVECGRIVTELAGHEDAIS-CVAWDEKRKRLISGNLVGAPKLYATE 908 (917)
Q Consensus 848 g~~Lasgs~DG~I~Iwdl~tg~~l~~l~~h~~~V~-slafSpdg~~LaSgs~DG~V~IWdl~ 908 (917)
+..+++|+.||+|+|||+.+++++.++.+|...+. +++|||||++|+||+.|++|+|||+.
T Consensus 295 g~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG~~LaSGS~D~TIklWd~~ 356 (356)
T 2w18_A 295 DHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHYS 356 (356)
T ss_dssp TTEEEEEETTSCEEEEETTTCSEEEEECCC--CCCCEEEECSSSSEEEEECTTSCEEEEEEC
T ss_pred CCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEECCCCCEEEEEECCCcEEEecCC
Confidence 99999999999999999999999999999987655 68999999999999999999999963
No 116
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=99.96 E-value=1.3e-27 Score=275.59 Aligned_cols=264 Identities=13% Similarity=0.109 Sum_probs=200.3
Q ss_pred cccccCCcc-ccceeeeccCCcceEEEEEeC-CCcEEEEEecCCceEEEeccCCceeeeeec--cccceEEEEEeCCCCE
Q psy3053 561 SNSWCDKSI-LEPLHFCHSHKEAITAVAICG-EGISVASVGRDAMLKIHSLKTGRQERSAVL--SSMTLSSLCILPDNCT 636 (917)
Q Consensus 561 ~~~w~~~~~-l~~~~~l~~H~~~Vtsv~fSp-dg~~Lasgs~Dg~I~IWd~~t~~~~~~~~~--~~~~V~sl~~spd~~~ 636 (917)
..+|+.... ......+.+|.+.|++|+|+| ++++|+||+.||+|++||+.++........ +...+.+++|+|++.+
T Consensus 144 i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (435)
T 4e54_B 144 IMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRM 223 (435)
T ss_dssp EEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCEEEEEECCSSCSCCCCCEEEETTTTE
T ss_pred EEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCceeEEeccCCCCccEEEEEECCCCCE
Confidence 368986543 234455679999999999998 689999999999999999986644332222 3445788999999999
Q ss_pred EEEEecccEEEEEEeccCeeeEEeccCCCceeEEEecCCCC-EEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCc
Q psy3053 637 MLVGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRK-RLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNR 715 (917)
Q Consensus 637 Lasgs~Dg~I~Iwdl~tg~~i~~l~~H~~~Vt~l~~spd~~-~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~ 715 (917)
|++|+.||.|++||++ ++.+..+.+|.+.|++++|+|++. ++++|+.|++|++||+.+... ........+|...
T Consensus 224 l~~g~~dg~i~~wd~~-~~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~----~~~~~~~~~h~~~ 298 (435)
T 4e54_B 224 VVTGDNVGNVILLNMD-GKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRG----KASFLYSLPHRHP 298 (435)
T ss_dssp EEEECSSSBEEEEESS-SCBCCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCS----SSCCSBCCBCSSC
T ss_pred EEEEeCCCcEeeeccC-cceeEEEecccceEEeeeecCCCceEEEEecCcceeeEEecccccc----cceEEEeeecccc
Confidence 9999999999999986 566778899999999999999875 788999999999999987521 1223334578999
Q ss_pred eEEEEEeCCCCEEEEEECCCeEEEEECCCCeeeEEecCCCC------CCeEEEEEecCCCEEEEEeC------------C
Q psy3053 716 IKCLAISKDNNQLAVGTEAGELIIWSLENHLMTQQLSDDIN------ASVNGVLFSEDGCRVLSCGN------------N 777 (917)
Q Consensus 716 V~~l~~spdg~~Lasgs~dG~I~iwDl~~~~~~~~l~~~h~------~~V~~v~fspdg~~L~s~s~------------D 777 (917)
|++++|+|+|.+|++|+.||.|++||+.++.....+. .|. ..+....|+|++..+++++. +
T Consensus 299 v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 377 (435)
T 4e54_B 299 VNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLI-PHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYEL 377 (435)
T ss_dssp EEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEEC-CCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCC
T ss_pred ccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEe-cccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCC
Confidence 9999999999999999999999999999988776665 222 12345567777777776642 3
Q ss_pred CeEEEEECCCCeEEEEee--cCCceEEE-EEeCCCEEEEEeCCCeEEEEECCCCEE
Q psy3053 778 CMLNVYDLTTGMQVCNKV--FEEKLLCL-SWAGEEKVILGGALGMVYLVDLIQVQL 830 (917)
Q Consensus 778 g~I~iwDl~tg~~i~~~~--~~~~i~~l-~~s~~~~lv~gs~dG~I~vwdl~~~~~ 830 (917)
+.|++||..+++.+.... +...|.++ +|+|++.+++++.|+.|++|++.+++.
T Consensus 378 ~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg~~lasg~d~~i~iW~~~~gk~ 433 (435)
T 4e54_B 378 RTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGDTLASAMGYHILIWSQQEART 433 (435)
T ss_dssp CCEEEECSSSCCEEEEECCSSCCCCCCEEEECTTSSCEEEECSSEEEECCCC----
T ss_pred CEEEEEECCCCcEEEEEeCCCCCcEEEEEEECCCCCEEEEEcCCcEEEEECCcCee
Confidence 568888888887776543 34455555 467776666666677777777776654
No 117
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.96 E-value=1.5e-25 Score=252.82 Aligned_cols=268 Identities=10% Similarity=0.154 Sum_probs=224.5
Q ss_pred CEEEEEecccEEEEEEeccCeeeEEeccCCCceeEEEecCCCCEE-EEEECCCeEEEEeCCCCCCCccCCcceeeeccCC
Q psy3053 635 CTMLVGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRL-ISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLD 713 (917)
Q Consensus 635 ~~Lasgs~Dg~I~Iwdl~tg~~i~~l~~H~~~Vt~l~~spd~~~L-~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~ 713 (917)
..+++++.|+.|++||+.+++.+..+.+|. .+.+++|+|+++.+ ++++.|++|++||+.++ .......+.
T Consensus 3 ~l~vs~~~d~~v~v~d~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~--------~~~~~~~~~ 73 (391)
T 1l0q_A 3 FAYIANSESDNISVIDVTSNKVTATIPVGS-NPMGAVISPDGTKVYVANAHSNDVSIIDTATN--------NVIATVPAG 73 (391)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEEGGGTEEEEEETTTT--------EEEEEEECS
T ss_pred EEEEEcCCCCEEEEEECCCCeEEEEeecCC-CcceEEECCCCCEEEEECCCCCeEEEEECCCC--------eEEEEEECC
Confidence 467888999999999999999999888775 48999999999987 67779999999999776 233334445
Q ss_pred CceEEEEEeCCCCEEEEEE-CCCeEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEE-EEEeCCCeEEEEECCCCeEE
Q psy3053 714 NRIKCLAISKDNNQLAVGT-EAGELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRV-LSCGNNCMLNVYDLTTGMQV 791 (917)
Q Consensus 714 ~~V~~l~~spdg~~Lasgs-~dG~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L-~s~s~Dg~I~iwDl~tg~~i 791 (917)
..+.+++|+|+++.+++++ .++.|++||+.+++.+..+. +...+.+++|+|+|+.+ ++++.++.|++||+.+++.+
T Consensus 74 ~~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~--~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~ 151 (391)
T 1l0q_A 74 SSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVK--TGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVI 151 (391)
T ss_dssp SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE--CSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEE
T ss_pred CCccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEe--CCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEE
Confidence 5899999999999876554 67999999999999888776 44578999999999987 67778999999999999998
Q ss_pred EEeecCCceEEEEEeCCCE-E-EEEeCCCeEEEEECCCCEEEEEEecCCCceEEE--eecCCEEEEEe---CCCeEEEEE
Q psy3053 792 CNKVFEEKLLCLSWAGEEK-V-ILGGALGMVYLVDLIQVQLLKQVRAHKDAVLSL--HFDNCTMLVGC---WDSCVVIYD 864 (917)
Q Consensus 792 ~~~~~~~~i~~l~~s~~~~-l-v~gs~dG~I~vwdl~~~~~i~~l~~h~~~V~si--s~dg~~Lasgs---~DG~I~Iwd 864 (917)
........+.++++++++. + ++++.++.|++||+.+++....+.. ...+.++ +++++.+++++ .++.|++||
T Consensus 152 ~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d 230 (391)
T 1l0q_A 152 NTVSVGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKV-EAAPSGIAVNPEGTKAYVTNVDKYFNTVSMID 230 (391)
T ss_dssp EEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC-SSEEEEEEECTTSSEEEEEEECSSCCEEEEEE
T ss_pred EEEecCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEec-CCCccceEECCCCCEEEEEecCcCCCcEEEEE
Confidence 8888888899999998774 4 4667889999999999998877764 4566666 66899988888 689999999
Q ss_pred CcCCeEEEEecCCCCCEEEEEEcCCCCEE-EEEeCCCcEEEEecCcc-eEEEE
Q psy3053 865 VECGRIVTELAGHEDAISCVAWDEKRKRL-ISGNLVGAPKLYATEFY-LLYVL 915 (917)
Q Consensus 865 l~tg~~l~~l~~h~~~V~slafSpdg~~L-aSgs~DG~V~IWdl~~~-ll~~L 915 (917)
+.+++.+..+..|. .+.+++|+|+|++| ++++.|+.|++||++.. .+..+
T Consensus 231 ~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~~~~~~ 282 (391)
T 1l0q_A 231 TGTNKITARIPVGP-DPAGIAVTPDGKKVYVALSFXNTVSVIDTATNTITATM 282 (391)
T ss_dssp TTTTEEEEEEECCS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred CCCCeEEEEEecCC-CccEEEEccCCCEEEEEcCCCCEEEEEECCCCcEEEEE
Confidence 99999999888765 57899999999988 67788999999999854 44443
No 118
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=99.95 E-value=3.3e-26 Score=249.50 Aligned_cols=261 Identities=20% Similarity=0.246 Sum_probs=204.9
Q ss_pred ccccccCCccccceee--eccCCcceEEEEEeCCCcEEEEEecCCceEEEeccCCceeeeeeccccceEEEEEeCCCCEE
Q psy3053 560 VSNSWCDKSILEPLHF--CHSHKEAITAVAICGEGISVASVGRDAMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTM 637 (917)
Q Consensus 560 ~~~~w~~~~~l~~~~~--l~~H~~~Vtsv~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~~~~~~~~V~sl~~spd~~~L 637 (917)
..++|+..++ ++++. +.+|...|++++|+|+|+++++|+.||+|++|++.+++.++.+.+|...+.++ ++++..+
T Consensus 46 tV~iWd~~tg-~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~--~~~~~~l 122 (318)
T 4ggc_A 46 SVYLWSASSG-DILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSL--SWNSYIL 122 (318)
T ss_dssp EEEEEETTTC-CEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEE--EEETTEE
T ss_pred EEEEEECCCC-CEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEecCccceEEEe--ecCCCEE
Confidence 3478986654 34444 45788899999999999999999999999999999999999999998877665 4567899
Q ss_pred EEEecccEEEEEEeccC-eeeEEeccCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCce
Q psy3053 638 LVGCWDSCVVIYDVECG-RIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRI 716 (917)
Q Consensus 638 asgs~Dg~I~Iwdl~tg-~~i~~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V 716 (917)
++|+.++.+++|+...+ ..+..+.+|...+.+++++++++++++++.||+|++||+.++... .........+...|
T Consensus 123 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~---~~~~~~~~~~~~~v 199 (318)
T 4ggc_A 123 SSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGG---WVPLQTFTQHQGAV 199 (318)
T ss_dssp EEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTB---SCCSEEECCCCSCE
T ss_pred EEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCccc---ccceeeecccCCce
Confidence 99999999999998875 556778899999999999999999999999999999999876321 12334456678899
Q ss_pred EEEEEeCCCCEE---EEEECCCeEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEEe--CCCeEEEEECCCCeEE
Q psy3053 717 KCLAISKDNNQL---AVGTEAGELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCG--NNCMLNVYDLTTGMQV 791 (917)
Q Consensus 717 ~~l~~spdg~~L---asgs~dG~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s--~Dg~I~iwDl~tg~~i 791 (917)
.++++++++..+ ++|+.++.|++||........... +...+..+.|+|++..+++++ .|+.|++||+.++
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~--- 274 (318)
T 4ggc_A 200 KAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVD--AHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTM--- 274 (318)
T ss_dssp EEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEE--CSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTC---
T ss_pred EEEEecCCCCcEEEEEecCCCCEEEEEeccccccccccc--ceeeeeeeeecccccceEEEEEcCCCEEEEEECCCC---
Confidence 999999977533 456778999999999888776664 677899999999988877654 4566666665554
Q ss_pred EEeecCCceEEEEEeCCCEEEEEeCCCeEEEEECCCCEEEEEEecCCCceEEE--eecCCEEEEEeCCCeEEEEECcCC
Q psy3053 792 CNKVFEEKLLCLSWAGEEKVILGGALGMVYLVDLIQVQLLKQVRAHKDAVLSL--HFDNCTMLVGCWDSCVVIYDVECG 868 (917)
Q Consensus 792 ~~~~~~~~i~~l~~s~~~~lv~gs~dG~I~vwdl~~~~~i~~l~~h~~~V~si--s~dg~~Lasgs~DG~I~Iwdl~tg 868 (917)
+++.++.+|.+.|+++ +|++++|++|+.||+|++||+.+.
T Consensus 275 -------------------------------------~~~~~l~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~~~ 316 (318)
T 4ggc_A 275 -------------------------------------AKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFEL 316 (318)
T ss_dssp -------------------------------------CEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCC
T ss_pred -------------------------------------cEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCC
Confidence 4445556666666666 446667777777777777776543
No 119
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.95 E-value=1.7e-26 Score=265.85 Aligned_cols=249 Identities=16% Similarity=0.214 Sum_probs=209.7
Q ss_pred eeeccCCcceEEEEEeCC-CcEEEEEecCCceEEEeccC----------CceeeeeeccccceEEEEEeCCCC-EEEEEe
Q psy3053 574 HFCHSHKEAITAVAICGE-GISVASVGRDAMLKIHSLKT----------GRQERSAVLSSMTLSSLCILPDNC-TMLVGC 641 (917)
Q Consensus 574 ~~l~~H~~~Vtsv~fSpd-g~~Lasgs~Dg~I~IWd~~t----------~~~~~~~~~~~~~V~sl~~spd~~-~Lasgs 641 (917)
.....|.+.|++++|+|+ +.++++++.||.|++|++.+ ......+..|...+.+++|+|++. +|++|+
T Consensus 122 ~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~ 201 (430)
T 2xyi_A 122 EIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSAS 201 (430)
T ss_dssp EEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEEC
T ss_pred EEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEe
Confidence 345679999999999997 68999999999999999987 567778889999999999999988 999999
Q ss_pred cccEEEEEEeccCee-------eEEeccCCCceeEEEecC-CCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCC
Q psy3053 642 WDSCVVIYDVECGRI-------VTELAGHEDAISCVAWDE-KRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLD 713 (917)
Q Consensus 642 ~Dg~I~Iwdl~tg~~-------i~~l~~H~~~Vt~l~~sp-d~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~ 713 (917)
.||.|++|++.++.. ...+.+|...|.+++|+| ++..+++++.||.|++||+++... .........|.
T Consensus 202 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~----~~~~~~~~~~~ 277 (430)
T 2xyi_A 202 DDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNT----SKPSHTVDAHT 277 (430)
T ss_dssp TTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCS----SSCSEEEECCS
T ss_pred CCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCC----CcceeEeecCC
Confidence 999999999987432 456778999999999999 778999999999999999986521 12333445788
Q ss_pred CceEEEEEeCCCC-EEEEEECCCeEEEEECCC-CeeeEEecCCCCCCeEEEEEecCCC-EEEEEeCCCeEEEEECCC---
Q psy3053 714 NRIKCLAISKDNN-QLAVGTEAGELIIWSLEN-HLMTQQLSDDINASVNGVLFSEDGC-RVLSCGNNCMLNVYDLTT--- 787 (917)
Q Consensus 714 ~~V~~l~~spdg~-~Lasgs~dG~I~iwDl~~-~~~~~~l~~~h~~~V~~v~fspdg~-~L~s~s~Dg~I~iwDl~t--- 787 (917)
..|++++|+|++. ++++|+.||.|++||+++ +..+..+. .|...|.+++|+|++. ++++++.||.|++||+..
T Consensus 278 ~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~-~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~ 356 (430)
T 2xyi_A 278 AEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFE-SHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGE 356 (430)
T ss_dssp SCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEE-CCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTC
T ss_pred CCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEee-cCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCcc
Confidence 9999999999987 789999999999999998 45666776 7899999999999985 689999999999999976
Q ss_pred -----------CeEEEEe-ecCCceEEEEEeCCC--EEEEEeCCCeEEEEECCC
Q psy3053 788 -----------GMQVCNK-VFEEKLLCLSWAGEE--KVILGGALGMVYLVDLIQ 827 (917)
Q Consensus 788 -----------g~~i~~~-~~~~~i~~l~~s~~~--~lv~gs~dG~I~vwdl~~ 827 (917)
.+.+... .+...+.+++|++++ .+++++.||.|++|++..
T Consensus 357 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~ 410 (430)
T 2xyi_A 357 EQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAE 410 (430)
T ss_dssp CCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECH
T ss_pred ccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEccc
Confidence 2333333 356679999999875 477888889999998864
No 120
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.95 E-value=2.3e-27 Score=292.90 Aligned_cols=247 Identities=18% Similarity=0.195 Sum_probs=209.6
Q ss_pred eEEeccCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCC--CCEEEEEECC
Q psy3053 657 VTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKD--NNQLAVGTEA 734 (917)
Q Consensus 657 i~~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd--g~~Lasgs~d 734 (917)
+..+.+|.+.|++++|+|++++|++|+.||+|++||+.++. ........+|.+.|.+++|+++ ++.+++|+.|
T Consensus 2 ~~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~-----~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~D 76 (753)
T 3jro_A 2 VVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGET-----HKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYD 76 (753)
T ss_dssp ------CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTE-----EEEEEEECCCSSCEEEEEECCTTSCSEEEEEETT
T ss_pred eeecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCC-----CccceeccCCcCceEEEEecCCCCCCEEEEEeCC
Confidence 34678999999999999999999999999999999986431 1234456689999999999988 9999999999
Q ss_pred CeEEEEECCCCe--eeEEecCCCCCCeEEEEEecC--CCEEEEEeCCCeEEEEECCCCe---EEEEeecCCceEEEEEeC
Q psy3053 735 GELIIWSLENHL--MTQQLSDDINASVNGVLFSED--GCRVLSCGNNCMLNVYDLTTGM---QVCNKVFEEKLLCLSWAG 807 (917)
Q Consensus 735 G~I~iwDl~~~~--~~~~l~~~h~~~V~~v~fspd--g~~L~s~s~Dg~I~iwDl~tg~---~i~~~~~~~~i~~l~~s~ 807 (917)
|.|++||+.+++ ....+. .|...|.+++|+|+ +..+++|+.||.|++||++++. ......+...+.+++|+|
T Consensus 77 g~I~vwd~~~~~~~~~~~~~-~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p 155 (753)
T 3jro_A 77 GKVLIWKEENGRWSQIAVHA-VHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAP 155 (753)
T ss_dssp SCEEEEEEETTEEEEEEEEC-CCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECC
T ss_pred CeEEEEECCCCccccccccc-CCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecC
Confidence 999999999986 555555 78999999999999 9999999999999999998773 333445778899999998
Q ss_pred --------------CCEEEEEeCCCeEEEEECCCC----EEEEEEecCCCceEEE--eec---CCEEEEEeCCCeEEEEE
Q psy3053 808 --------------EEKVILGGALGMVYLVDLIQV----QLLKQVRAHKDAVLSL--HFD---NCTMLVGCWDSCVVIYD 864 (917)
Q Consensus 808 --------------~~~lv~gs~dG~I~vwdl~~~----~~i~~l~~h~~~V~si--s~d---g~~Lasgs~DG~I~Iwd 864 (917)
...+++|+.||.|++||++++ .....+.+|...|+++ +|+ ++++++|+.||.|++||
T Consensus 156 ~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd 235 (753)
T 3jro_A 156 ATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWT 235 (753)
T ss_dssp CC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEE
T ss_pred cccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEec
Confidence 457999999999999999877 6677888999999999 556 88999999999999999
Q ss_pred CcCCe-----EEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCc
Q psy3053 865 VECGR-----IVTELAGHEDAISCVAWDEKRKRLISGNLVGAPKLYATEF 909 (917)
Q Consensus 865 l~tg~-----~l~~l~~h~~~V~slafSpdg~~LaSgs~DG~V~IWdl~~ 909 (917)
+.++. ......+|.+.|++++|+|+|++|++|+.||.|++|+++.
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~ 285 (753)
T 3jro_A 236 QDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL 285 (753)
T ss_dssp ESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCS
T ss_pred CCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCC
Confidence 98864 3333456889999999999999999999999999999973
No 121
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.95 E-value=4.8e-25 Score=261.65 Aligned_cols=322 Identities=9% Similarity=0.056 Sum_probs=252.5
Q ss_pred EEeCCCcEEEEEecCCceEEEeccCCceeeeeeccccceEEEEEeCCCCEEEEEecccEEEEEEe--ccCeeeEEeccCC
Q psy3053 587 AICGEGISVASVGRDAMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTMLVGCWDSCVVIYDV--ECGRIVTELAGHE 664 (917)
Q Consensus 587 ~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~~~~~~~~V~sl~~spd~~~Lasgs~Dg~I~Iwdl--~tg~~i~~l~~H~ 664 (917)
+++|++..+++++.|++|.+||..+++.+..+..+.. +.+++++||++++++++.|++|.+||+ .+++.+..+. +.
T Consensus 144 ~~~p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~-~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~-~g 221 (543)
T 1nir_A 144 DLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIK-IG 221 (543)
T ss_dssp CCCGGGEEEEEEGGGTEEEEEETTTCCEEEEEECSTT-EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEE-CC
T ss_pred ccCCCCEEEEEEcCCCeEEEEECCCceEEEEEecCcc-cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEe-cC
Confidence 3789999999999999999999999999988875433 789999999999999999999999999 8899888887 45
Q ss_pred CceeEEEecC----CCCEEEEEE-CCCeEEEEeCCCCCCCccCCcceeee--------ccCCCceEEEEEeCCCCE-EEE
Q psy3053 665 DAISCVAWDE----KRKRLISGS-WDCTVRVWNTGASWSHMKPSKSLVSQ--------LDLDNRIKCLAISKDNNQ-LAV 730 (917)
Q Consensus 665 ~~Vt~l~~sp----d~~~L~Sgs-~DgtI~vWdl~~~~~~~~~~~~~~~~--------~~h~~~V~~l~~spdg~~-Las 730 (917)
..+..++|+| +|+++++++ .+++|.+||..+..... .+... ......+.++.++|++.. +++
T Consensus 222 ~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~----~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs 297 (543)
T 1nir_A 222 IEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQ----IVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVN 297 (543)
T ss_dssp SEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEE----EEECCEECSSSCCEESCCCEEEEEECSSSSEEEEE
T ss_pred CCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccce----eecccCcccCccccccCCceEEEEECCCCCEEEEE
Confidence 5689999999 999999988 48999999987652110 00000 012337899999997754 556
Q ss_pred EECCCeEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEEe-CCCeEEEEECCCCeEEEEeec-----CCceEEEE
Q psy3053 731 GTEAGELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCG-NNCMLNVYDLTTGMQVCNKVF-----EEKLLCLS 804 (917)
Q Consensus 731 gs~dG~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s-~Dg~I~iwDl~tg~~i~~~~~-----~~~i~~l~ 804 (917)
...+|.|.+||+.+.+.+......+...+.+++|+|+|+++++++ .+++|.+||..+++.+..+.. .+....+
T Consensus 298 ~~~~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~- 376 (543)
T 1nir_A 298 VKETGKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANF- 376 (543)
T ss_dssp ETTTTEEEEEECTTSSSCEEEEEECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEE-
T ss_pred ECCCCeEEEEEecCCCcceeEEeccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCccc-
Confidence 677899999999887654411113566788999999999877665 588999999999998877653 3333333
Q ss_pred EeCC-CEEEEEe--CCCeEEEEECCC-------CEEEEEEecCCCceEEE--eecCCEEEEEe-------CCCeEEEEEC
Q psy3053 805 WAGE-EKVILGG--ALGMVYLVDLIQ-------VQLLKQVRAHKDAVLSL--HFDNCTMLVGC-------WDSCVVIYDV 865 (917)
Q Consensus 805 ~s~~-~~lv~gs--~dG~I~vwdl~~-------~~~i~~l~~h~~~V~si--s~dg~~Lasgs-------~DG~I~Iwdl 865 (917)
++|+ +.+++.+ .+++|.+||..+ ++.++++.+|.+.+..+ +|+++.|++++ .+++|.+||+
T Consensus 377 ~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~ 456 (543)
T 1nir_A 377 VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDL 456 (543)
T ss_dssp EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEET
T ss_pred CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEEC
Confidence 3554 5555443 579999999998 89999999988776555 88999999987 3779999999
Q ss_pred cCCeEE-EEe--------cCCCCCEEEEEEcCCCCEEEEEe-----CCCcEEEEecCcc-eEEEE
Q psy3053 866 ECGRIV-TEL--------AGHEDAISCVAWDEKRKRLISGN-----LVGAPKLYATEFY-LLYVL 915 (917)
Q Consensus 866 ~tg~~l-~~l--------~~h~~~V~slafSpdg~~LaSgs-----~DG~V~IWdl~~~-ll~~L 915 (917)
.+++.. ..+ ..+...+..++|+|+|+.|+++. .|+.|.|||.++. ++.++
T Consensus 457 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~i 521 (543)
T 1nir_A 457 KNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLKAVV 521 (543)
T ss_dssp TCTTSCCEEECHHHHHCCCSSCCEEEEEEECSSSSEEEEEEECCTTSCCEEEEEETTTTEEEEEE
T ss_pred CCCCCCeEEeechhhcccCCCCCceEeccCCCCCCEEEEEeecCCCCCCeEEEEECCCceEEEee
Confidence 998876 443 35677899999999999998763 4799999999865 55544
No 122
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=99.94 E-value=6.1e-26 Score=255.69 Aligned_cols=207 Identities=11% Similarity=0.082 Sum_probs=175.1
Q ss_pred ccCCcceEEEEEeCCCcEEEEEe--cCCceEEEeccCCceeeeeeccccceEEEEEeCCCCEEEEEecccEEEEEEeccC
Q psy3053 577 HSHKEAITAVAICGEGISVASVG--RDAMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTMLVGCWDSCVVIYDVECG 654 (917)
Q Consensus 577 ~~H~~~Vtsv~fSpdg~~Lasgs--~Dg~I~IWd~~t~~~~~~~~~~~~~V~sl~~spd~~~Lasgs~Dg~I~Iwdl~tg 654 (917)
..+...+.+++|||||+++++++ .|++|+|||+.+++.+..+. |...|.+++|+|||+++++++.+ .+.+|+..++
T Consensus 130 ~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~~-~~~~V~~v~fspdg~~l~s~s~~-~~~~~~~~~~ 207 (365)
T 4h5i_A 130 TNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEIE-TRGEVKDLHFSTDGKVVAYITGS-SLEVISTVTG 207 (365)
T ss_dssp CCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEEE-CSSCCCEEEECTTSSEEEEECSS-CEEEEETTTC
T ss_pred CCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEeC-CCCceEEEEEccCCceEEeccce-eEEEEEeccC
Confidence 34556789999999999987554 68999999999999888775 66789999999999999999855 5667777777
Q ss_pred eeeE--EeccCCCceeEEEecCCCCEEEEEECCC----eEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEE
Q psy3053 655 RIVT--ELAGHEDAISCVAWDEKRKRLISGSWDC----TVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQL 728 (917)
Q Consensus 655 ~~i~--~l~~H~~~Vt~l~~spd~~~L~Sgs~Dg----tI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~L 728 (917)
+.+. ...+|...|.+++|+|+++.+++++.|+ .+++|++...... ........+|...|++++|+|+|++|
T Consensus 208 ~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~---~~~~~~~~~~~~~V~~~~~Spdg~~l 284 (365)
T 4h5i_A 208 SCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTS---VLRSKQVTNRFKGITSMDVDMKGELA 284 (365)
T ss_dssp CEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEE---EEEEEEEESSCSCEEEEEECTTSCEE
T ss_pred cceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceec---ceeeeeecCCCCCeEeEEECCCCCce
Confidence 6543 3457899999999999999999999887 6888987654111 11223456788999999999999999
Q ss_pred EEEECCCeEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCC
Q psy3053 729 AVGTEAGELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTG 788 (917)
Q Consensus 729 asgs~dG~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~tg 788 (917)
|+|+.||+|++||+.+++++..+..+|...|++++|+|||++|++|+.|++|+|||+..+
T Consensus 285 asgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 285 VLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVASVSAANTIHIIKLPLN 344 (365)
T ss_dssp EEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEECCTT
T ss_pred EEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence 999999999999999999999876689999999999999999999999999999999643
No 123
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.94 E-value=3e-25 Score=256.70 Aligned_cols=243 Identities=10% Similarity=0.065 Sum_probs=205.7
Q ss_pred eeccCCcceEEEEEeCCCcEE-EEEecCCceEEEecc--CCceeeeee--ccccceEEEEEeCCCCEEEEEecccEEEEE
Q psy3053 575 FCHSHKEAITAVAICGEGISV-ASVGRDAMLKIHSLK--TGRQERSAV--LSSMTLSSLCILPDNCTMLVGCWDSCVVIY 649 (917)
Q Consensus 575 ~l~~H~~~Vtsv~fSpdg~~L-asgs~Dg~I~IWd~~--t~~~~~~~~--~~~~~V~sl~~spd~~~Lasgs~Dg~I~Iw 649 (917)
...+|.+.|++++|+|+|++| ++|+.||.|++|++. +++.+..+. .+...|.+++|+|++++|++|+.||.|++|
T Consensus 97 ~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~ 176 (450)
T 2vdu_B 97 GAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIADKFGDVYSI 176 (450)
T ss_dssp ---CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred CCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEEEEeCCCcEEEE
Confidence 346789999999999999996 899999999999999 888888776 456789999999999999999999999999
Q ss_pred EeccCeeeE----EeccCCCceeEEEecCC---CCEEEEEECCCeEEEEeCCCCCCCccCCcceee-eccCCCceEEEEE
Q psy3053 650 DVECGRIVT----ELAGHEDAISCVAWDEK---RKRLISGSWDCTVRVWNTGASWSHMKPSKSLVS-QLDLDNRIKCLAI 721 (917)
Q Consensus 650 dl~tg~~i~----~l~~H~~~Vt~l~~spd---~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~-~~~h~~~V~~l~~ 721 (917)
++.+++... .+.+|.+.|++++|+|+ +++|++|+.|++|++||+.++ ..... ..+|...|.+++|
T Consensus 177 ~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~-------~~~~~~~~~h~~~v~~~~~ 249 (450)
T 2vdu_B 177 DINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQC-------FIVDKWLFGHKHFVSSICC 249 (450)
T ss_dssp ETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCT-------TCEEEECCCCSSCEEEEEE
T ss_pred ecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCC-------ceeeeeecCCCCceEEEEE
Confidence 998887554 77889999999999999 999999999999999998765 22333 4478999999999
Q ss_pred eCCCCEEEEEECCCeEEEEECCCCeeeEEecC------------------------CCCCCeEEEEEecCCCEEEEEe-C
Q psy3053 722 SKDNNQLAVGTEAGELIIWSLENHLMTQQLSD------------------------DINASVNGVLFSEDGCRVLSCG-N 776 (917)
Q Consensus 722 spdg~~Lasgs~dG~I~iwDl~~~~~~~~l~~------------------------~h~~~V~~v~fspdg~~L~s~s-~ 776 (917)
+ ++++|++|+.||.|++||+.+++.+..+.. .....|.+++|+|+++++++++ .
T Consensus 250 s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~ 328 (450)
T 2vdu_B 250 G-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEA 328 (450)
T ss_dssp C-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETT
T ss_pred C-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECC
Confidence 9 999999999999999999999988877652 2245789999999999999999 8
Q ss_pred CCeEEEEEC--CCC---eEEEEeecCCceEEEEEeCCCEEEEEeC-------CCeEEEEEC
Q psy3053 777 NCMLNVYDL--TTG---MQVCNKVFEEKLLCLSWAGEEKVILGGA-------LGMVYLVDL 825 (917)
Q Consensus 777 Dg~I~iwDl--~tg---~~i~~~~~~~~i~~l~~s~~~~lv~gs~-------dG~I~vwdl 825 (917)
|+.|++|++ .++ ..+..+.....+.+++|++++.+++.+. +..|.+|.+
T Consensus 329 d~~i~iw~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v~~~ 389 (450)
T 2vdu_B 329 TKCIIILEMSEKQKGDLALKQIITFPYNVISLSAHNDEFQVTLDNKESSGVQKNFAKFIEY 389 (450)
T ss_dssp CSEEEEEEECSSSTTCEEEEEEEECSSCEEEEEEETTEEEEEECCTTCCSSCCCSEEEEEE
T ss_pred CCeEEEEEeccCCCCceeeccEeccCCceEEEEecCCcEEEEEecccCCCCCCcceEEEEE
Confidence 999999999 665 6666666678899999999766666544 344677754
No 124
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.94 E-value=1.1e-25 Score=252.52 Aligned_cols=244 Identities=10% Similarity=0.146 Sum_probs=185.6
Q ss_pred EEEeccCeeeEEeccCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCE
Q psy3053 648 IYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQ 727 (917)
Q Consensus 648 Iwdl~tg~~i~~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~ 727 (917)
+|++.+.+.+....+|.+.|++++|+|++++|++|+.|| +++|++.+. ...... +...+..+++.++++.
T Consensus 3 i~s~~~~~~~~~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~--------~~~~~~-~~~~~~~~~~~~~~~~ 72 (355)
T 3vu4_A 3 LGSMITRNPIVPENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPV--------AHIMSQ-EMRHLSKVRMLHRTNY 72 (355)
T ss_dssp ----------------CCCCCEEEECTTSSEEEEECSSE-EEEEEETTE--------EEEEEE-ECSCCCEEEECTTSSE
T ss_pred cccccccCCccccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCc--------ceeeee-ecCCeEEEEEcCCCCE
Confidence 566777777777889999999999999999999988775 789998654 111111 1224788899998887
Q ss_pred E-EEEECCCeEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCC-eEEEEeecCCceEEEEE
Q psy3053 728 L-AVGTEAGELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTG-MQVCNKVFEEKLLCLSW 805 (917)
Q Consensus 728 L-asgs~dG~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~tg-~~i~~~~~~~~i~~l~~ 805 (917)
+ ++|+.|+.|++||+.+++.+..+. +...|.++++++++ ++++ .|+.|++||+.++ +.+..... ....+++
T Consensus 73 ~~~~~~~d~~v~iWd~~~~~~~~~~~--~~~~v~~v~~~~~~--~~~~-~~~~i~i~d~~~~~~~~~~~~~--~~~~~~~ 145 (355)
T 3vu4_A 73 VAFVTGVKEVVHIWDDVKKQDVSRIK--VDAPVKDLFLSREF--IVVS-YGDVISVFKFGNPWKRITDDIR--FGGVCEF 145 (355)
T ss_dssp EEEECSSTTEEEEEETTTTEEEEEEE--CSSCEEEEEECSSE--EEEE-ETTEEEEEESSTTCCBSSCCEE--EEEEEEE
T ss_pred EEEEECCccEEEEEECCCCcEEEEEE--CCCceEEEEEcCCE--EEEE-EcCEEEEEECCCCceeeEEecc--CCceEEE
Confidence 7 567788999999999999988886 66799999998874 3433 4789999999987 54444333 3444556
Q ss_pred eCCCEEEE--EeCCCeEEEEECCCCE---------------E-EEEEecCCCceEEE--eecCCEEEEEeCCCe-EEEEE
Q psy3053 806 AGEEKVIL--GGALGMVYLVDLIQVQ---------------L-LKQVRAHKDAVLSL--HFDNCTMLVGCWDSC-VVIYD 864 (917)
Q Consensus 806 s~~~~lv~--gs~dG~I~vwdl~~~~---------------~-i~~l~~h~~~V~si--s~dg~~Lasgs~DG~-I~Iwd 864 (917)
++ ..+++ |+.+|.|++||+.+++ + +..+.+|.+.|.++ +|+|++|++|+.||+ |++||
T Consensus 146 s~-~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd 224 (355)
T 3vu4_A 146 SN-GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFK 224 (355)
T ss_dssp ET-TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEE
T ss_pred Ec-cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEE
Confidence 66 46665 5789999999999865 2 67889999999999 669999999999998 99999
Q ss_pred CcCCeEEEEec-C-CCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCc
Q psy3053 865 VECGRIVTELA-G-HEDAISCVAWDEKRKRLISGNLVGAPKLYATEF 909 (917)
Q Consensus 865 l~tg~~l~~l~-~-h~~~V~slafSpdg~~LaSgs~DG~V~IWdl~~ 909 (917)
+.+++++..+. + |.+.|.+++|+|+|++|++|+.||+|++||++.
T Consensus 225 ~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~ 271 (355)
T 3vu4_A 225 TEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFN 271 (355)
T ss_dssp TTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSC
T ss_pred CCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccC
Confidence 99999999998 5 999999999999999999999999999999964
No 125
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.94 E-value=4.1e-26 Score=254.04 Aligned_cols=234 Identities=11% Similarity=0.088 Sum_probs=195.6
Q ss_pred EeCCCCEEEEEecccEEEEEEeccCeeeEEeccCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeee
Q psy3053 630 ILPDNCTMLVGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQ 709 (917)
Q Consensus 630 ~spd~~~Lasgs~Dg~I~Iwdl~tg~~i~~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~ 709 (917)
+.+++..+++|+.||+|++||+.+++.+..+. ...|.+++++|+ +++|+.|++|++|+...
T Consensus 44 ~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~--~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~-------------- 104 (343)
T 3lrv_A 44 MYYDKWVCMCRCEDGALHFTQLKDSKTITTIT--TPNPRTGGEHPA---IISRGPCNRLLLLYPGN-------------- 104 (343)
T ss_dssp SSEEEEEEEEEEETTEEEEEEESSSSCEEEEE--EECCCTTCCCCS---EEEECSTTEEEEEETTT--------------
T ss_pred hcCCCCEEEEECCCCcEEEEECCCCcEEEEEe--cCCceeeeeCCc---eEEecCCCeEEEEEccC--------------
Confidence 34578899999999999999999999888776 567888899986 99999999999999632
Q ss_pred ccCCCceEEEEEeCCCCEEEEEECCCeEEEEECCCCeeeEEecCCCCCCeEEEEEec--CCCEEEEEeCCCeEEEEECCC
Q psy3053 710 LDLDNRIKCLAISKDNNQLAVGTEAGELIIWSLENHLMTQQLSDDINASVNGVLFSE--DGCRVLSCGNNCMLNVYDLTT 787 (917)
Q Consensus 710 ~~h~~~V~~l~~spdg~~Lasgs~dG~I~iwDl~~~~~~~~l~~~h~~~V~~v~fsp--dg~~L~s~s~Dg~I~iwDl~t 787 (917)
.+.+||+.+++.+......|.+.|.+++|+| +++++++++.||.|++||+++
T Consensus 105 --------------------------~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~ 158 (343)
T 3lrv_A 105 --------------------------QITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYED 158 (343)
T ss_dssp --------------------------EEEEEETTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSS
T ss_pred --------------------------ceEEeecCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCC
Confidence 4677898888877777767888999999999 999999999999999999999
Q ss_pred CeEEEEe--ecCCceEEEEEeCCCE-EEEEeCCCeEEEEECCCCEEE-EEEec-CCCceEEE--eecCCEEEEEeCCCeE
Q psy3053 788 GMQVCNK--VFEEKLLCLSWAGEEK-VILGGALGMVYLVDLIQVQLL-KQVRA-HKDAVLSL--HFDNCTMLVGCWDSCV 860 (917)
Q Consensus 788 g~~i~~~--~~~~~i~~l~~s~~~~-lv~gs~dG~I~vwdl~~~~~i-~~l~~-h~~~V~si--s~dg~~Lasgs~DG~I 860 (917)
++..... .+...+.+++|+|++. +++|+.||.|++||+++++.+ ..+.+ |.+.|.++ +|++.+|++|+ |+.|
T Consensus 159 ~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v 237 (343)
T 3lrv_A 159 DSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTV 237 (343)
T ss_dssp SCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE-SSBE
T ss_pred CcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeE
Confidence 9886554 3445699999998775 556799999999999999877 78888 99999999 55899999999 5599
Q ss_pred EEEECcCCeEEEEecC---CCCCEE--EEEEcCCCCEEEEEeC-CCcEEEEecCc
Q psy3053 861 VIYDVECGRIVTELAG---HEDAIS--CVAWDEKRKRLISGNL-VGAPKLYATEF 909 (917)
Q Consensus 861 ~Iwdl~tg~~l~~l~~---h~~~V~--slafSpdg~~LaSgs~-DG~V~IWdl~~ 909 (917)
++||+++++.+..+.. |...+. +++|+|+|++|++++. |+.|++|+++.
T Consensus 238 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~ 292 (343)
T 3lrv_A 238 VCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDK 292 (343)
T ss_dssp EEEETTSSTTCBSSCCCBC-----CCEEEEECTTSSEEEEEETTTTEEEEEEECT
T ss_pred EEEEcCCCCcceeecccccccccccceEEEECCCCCEEEEecCCCCcEEEEEEcc
Confidence 9999998876555443 434444 6999999999999998 99999999853
No 126
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.94 E-value=9.9e-26 Score=256.47 Aligned_cols=266 Identities=11% Similarity=0.052 Sum_probs=184.6
Q ss_pred eccCCcceEEEEEeCCCcEEEEEecCCceEEEeccCCcee-----eeeeccccceEEEEEeC--------CCCEEEEEec
Q psy3053 576 CHSHKEAITAVAICGEGISVASVGRDAMLKIHSLKTGRQE-----RSAVLSSMTLSSLCILP--------DNCTMLVGCW 642 (917)
Q Consensus 576 l~~H~~~Vtsv~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~-----~~~~~~~~~V~sl~~sp--------d~~~Lasgs~ 642 (917)
...|...+....+++++.+|++++.|++|++||..++... ..+.+|...|.+++|+| |+++||+|+.
T Consensus 85 ~~~~~~~~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~ 164 (393)
T 4gq1_A 85 ENLHDGDGNVNSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGD 164 (393)
T ss_dssp CC----------CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEET
T ss_pred ccccCCCcceeecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEEC
Confidence 3456666677777888899999999999999999887643 44678999999999998 7899999999
Q ss_pred ccEEEEEEeccCeeeEEeccCCCceeEEEecCCC-CEEEEEECCCeEEEEeCCCCCCCccCC------------------
Q psy3053 643 DSCVVIYDVECGRIVTELAGHEDAISCVAWDEKR-KRLISGSWDCTVRVWNTGASWSHMKPS------------------ 703 (917)
Q Consensus 643 Dg~I~Iwdl~tg~~i~~l~~H~~~Vt~l~~spd~-~~L~Sgs~DgtI~vWdl~~~~~~~~~~------------------ 703 (917)
|++|+|||+.++..+..+.+|.+.|.+++|+|++ .+|++|+.||+|++||+.++.......
T Consensus 165 D~tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~ 244 (393)
T 4gq1_A 165 DCTLIIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPL 244 (393)
T ss_dssp TSEEEEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGG
T ss_pred CCeEEEEECCCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccc
Confidence 9999999999998888888999999999999987 479999999999999998764211100
Q ss_pred cceeeeccCCCceEEEEEe-CCCCEEEEEECCCeEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEEeCCCeEEE
Q psy3053 704 KSLVSQLDLDNRIKCLAIS-KDNNQLAVGTEAGELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCGNNCMLNV 782 (917)
Q Consensus 704 ~~~~~~~~h~~~V~~l~~s-pdg~~Lasgs~dG~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~Dg~I~i 782 (917)
.......+|...+.++.|+ ++++.+++++.|+.+++||+..++....+. .+...+..+.+.|+++.+......
T Consensus 245 ~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~----- 318 (393)
T 4gq1_A 245 VNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEIS-DSTMKLGPKNLLPNVQGISLFPSL----- 318 (393)
T ss_dssp C------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC--------------------CCSCSEEEECSSCCS-----
T ss_pred eeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEe-eecCccccEEEccccccccccCcc-----
Confidence 0111234677889999987 799999999999999999999888777766 666777777777765433221111
Q ss_pred EECCCCeEEEEeecCCceEEEEEe-CCCE-EEEEeCCCeEEEEECCCCEEEEEEecCCCceEEE--eecCCEEEEEeCCC
Q psy3053 783 YDLTTGMQVCNKVFEEKLLCLSWA-GEEK-VILGGALGMVYLVDLIQVQLLKQVRAHKDAVLSL--HFDNCTMLVGCWDS 858 (917)
Q Consensus 783 wDl~tg~~i~~~~~~~~i~~l~~s-~~~~-lv~gs~dG~I~vwdl~~~~~i~~l~~h~~~V~si--s~dg~~Lasgs~DG 858 (917)
+.++.+. .++. +++|+.||.|++||..+++......+|..+|.++ +|||++||+++.+|
T Consensus 319 -----------------~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~~V~svafspdG~~LA~as~~G 381 (393)
T 4gq1_A 319 -----------------LGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGMPIVDFCWHQDGSHLAIATEGS 381 (393)
T ss_dssp -----------------SCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEECSSCEEEEEECTTSSEEEEEESSE
T ss_pred -----------------eeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEecCCCCcEEEEEEcCCCCEEEEEeCCC
Confidence 1111111 2334 4567789999999999998888888899999988 66999999998776
Q ss_pred eEEEEEC
Q psy3053 859 CVVIYDV 865 (917)
Q Consensus 859 ~I~Iwdl 865 (917)
+.+|.+
T Consensus 382 -v~lvrL 387 (393)
T 4gq1_A 382 -VLLTRL 387 (393)
T ss_dssp -EEEEEE
T ss_pred -eEEEEE
Confidence 666654
No 127
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.94 E-value=1.7e-24 Score=266.15 Aligned_cols=322 Identities=11% Similarity=0.018 Sum_probs=246.2
Q ss_pred CcceEEEEEeCCCcEEEEEec-CC-----ceEEEeccCCceeeeeecccc------------------------ceEEEE
Q psy3053 580 KEAITAVAICGEGISVASVGR-DA-----MLKIHSLKTGRQERSAVLSSM------------------------TLSSLC 629 (917)
Q Consensus 580 ~~~Vtsv~fSpdg~~Lasgs~-Dg-----~I~IWd~~t~~~~~~~~~~~~------------------------~V~sl~ 629 (917)
...|.+++|||||++|++++. |+ .|.+||+.+++....+..+.. .+.+++
T Consensus 36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 115 (741)
T 2ecf_A 36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQ 115 (741)
T ss_dssp CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCE
T ss_pred CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeE
Confidence 457899999999999999998 88 899999999887766655433 378999
Q ss_pred EeCCCCEEEEEecccEEEEEEeccCe--eeEEeccCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCccee
Q psy3053 630 ILPDNCTMLVGCWDSCVVIYDVECGR--IVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLV 707 (917)
Q Consensus 630 ~spd~~~Lasgs~Dg~I~Iwdl~tg~--~i~~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~ 707 (917)
|+|||+.|++++. +.|++||+.++. ....+..|...+.+++|+|||++|++++ ++.|.+||+.++.. ..
T Consensus 116 ~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~~-------~~ 186 (741)
T 2ecf_A 116 WSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASGRQ-------MQ 186 (741)
T ss_dssp ECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTTEE-------EE
T ss_pred ECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEe-CCcEEEEecCCCCE-------EE
Confidence 9999999999886 999999999883 4556777888999999999999999988 56999999977521 11
Q ss_pred eeccCCC----------------ceEEEEEeCCCCEEEEEECCC---------------------------------eEE
Q psy3053 708 SQLDLDN----------------RIKCLAISKDNNQLAVGTEAG---------------------------------ELI 738 (917)
Q Consensus 708 ~~~~h~~----------------~V~~l~~spdg~~Lasgs~dG---------------------------------~I~ 738 (917)
....+.. .+.+++|+|||+.|++++.|+ .|.
T Consensus 187 ~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~ 266 (741)
T 2ecf_A 187 LTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLG 266 (741)
T ss_dssp CCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEE
T ss_pred eccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEE
Confidence 1111111 247899999999999987765 789
Q ss_pred EEECCC-CeeeEEecC-CCCCCeEEEEEecCCCEEEEEeC-----CCeEEEEECCCCeEEEEeecCC-----ceEEEEEe
Q psy3053 739 IWSLEN-HLMTQQLSD-DINASVNGVLFSEDGCRVLSCGN-----NCMLNVYDLTTGMQVCNKVFEE-----KLLCLSWA 806 (917)
Q Consensus 739 iwDl~~-~~~~~~l~~-~h~~~V~~v~fspdg~~L~s~s~-----Dg~I~iwDl~tg~~i~~~~~~~-----~i~~l~~s 806 (917)
+||+.+ ++....... .+...+.+++| |||+.|++++. +..|.+||+.+++......... .+.+++|+
T Consensus 267 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~s 345 (741)
T 2ecf_A 267 VISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFL 345 (741)
T ss_dssp EECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEEC
T ss_pred EEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEEC
Confidence 999988 876554432 36678999999 99999997764 5689999999987765544322 34578899
Q ss_pred CCCE-EEEEeCCCeEEEEECC-CCEEEEEEecCCCceEE---EeecCCEEEE-EeCCC--eEEEEECcC-CeEEEEecCC
Q psy3053 807 GEEK-VILGGALGMVYLVDLI-QVQLLKQVRAHKDAVLS---LHFDNCTMLV-GCWDS--CVVIYDVEC-GRIVTELAGH 877 (917)
Q Consensus 807 ~~~~-lv~gs~dG~I~vwdl~-~~~~i~~l~~h~~~V~s---is~dg~~Las-gs~DG--~I~Iwdl~t-g~~l~~l~~h 877 (917)
+++. +++++.+|.+.+|.+. ++. ...+..|...+.+ ++++++.|+. ++.++ .+++|++.. +.....+..
T Consensus 346 pdg~~~~~~~~~g~~~l~~~~~~~~-~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~g~~~~~l~~- 423 (741)
T 2ecf_A 346 DDGSILWSSERTGFQHLYRIDSKGK-AAALTHGNWSVDELLAVDEKAGLAYFRAGIESARESQIYAVPLQGGQPQRLSK- 423 (741)
T ss_dssp TTSCEEEEECTTSSCEEEEECSSSC-EEESCCSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEETTCCCCEECCC-
T ss_pred CCCeEEEEecCCCccEEEEEcCCCC-eeeeeecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEcCCCCeeeccc-
Confidence 8875 4566777877777664 344 7777777777754 4779987754 55555 899999864 555666665
Q ss_pred CCCEEEEEEcCCCCEEEEEeCC----CcEEEEecCcceEE
Q psy3053 878 EDAISCVAWDEKRKRLISGNLV----GAPKLYATEFYLLY 913 (917)
Q Consensus 878 ~~~V~slafSpdg~~LaSgs~D----G~V~IWdl~~~ll~ 913 (917)
...+.+++|||||++|+....+ +.+.+|+.++..+.
T Consensus 424 ~~~~~~~~~spdg~~l~~~~~~~~~p~~~~l~~~~~~~~~ 463 (741)
T 2ecf_A 424 APGMHSASFARNASVYVDSWSNNSTPPQIELFRANGEKIA 463 (741)
T ss_dssp SCSEEEEEECTTSSEEEEEEEETTEEEEEEEEETTSCEEE
T ss_pred CCCceEEEECCCCCEEEEEecCCCCCCeEEEEEcCCCeEE
Confidence 6678999999999998876543 56889988766544
No 128
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.93 E-value=7.4e-25 Score=240.08 Aligned_cols=224 Identities=15% Similarity=0.156 Sum_probs=190.9
Q ss_pred ccccCCccc---cceeeeccCCcceEEEEEeC--CCcEEEEEecCCceEEEeccCC---------ceeeeeeccccceEE
Q psy3053 562 NSWCDKSIL---EPLHFCHSHKEAITAVAICG--EGISVASVGRDAMLKIHSLKTG---------RQERSAVLSSMTLSS 627 (917)
Q Consensus 562 ~~w~~~~~l---~~~~~l~~H~~~Vtsv~fSp--dg~~Lasgs~Dg~I~IWd~~t~---------~~~~~~~~~~~~V~s 627 (917)
.+|+..... +....+.+|.+.|++++|+| ++++|++|+.||.|++||+.++ +....+..|...|.+
T Consensus 36 ~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 115 (351)
T 3f3f_A 36 KVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYS 115 (351)
T ss_dssp EEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEE
T ss_pred EEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCcccccccCcceeeeecccCCceeE
Confidence 578755432 46677889999999999999 6999999999999999999887 446777789999999
Q ss_pred EEEeCC--CCEEEEEecccEEEEEEeccCeeeEEec-------------cCCCceeEEEecCC---CCEEEEEECCCeEE
Q psy3053 628 LCILPD--NCTMLVGCWDSCVVIYDVECGRIVTELA-------------GHEDAISCVAWDEK---RKRLISGSWDCTVR 689 (917)
Q Consensus 628 l~~spd--~~~Lasgs~Dg~I~Iwdl~tg~~i~~l~-------------~H~~~Vt~l~~spd---~~~L~Sgs~DgtI~ 689 (917)
++|+|+ +.++++|+.||.|++||+.+++.+..+. +|...+.+++|+|+ +..+++++.|+.+.
T Consensus 116 ~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~ 195 (351)
T 3f3f_A 116 VKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAII 195 (351)
T ss_dssp EEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEE
T ss_pred EEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEE
Confidence 999999 9999999999999999999876544332 68889999999997 89999999999998
Q ss_pred EEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCC----CEEEEEECCCeEEEEECCCC--------------------
Q psy3053 690 VWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDN----NQLAVGTEAGELIIWSLENH-------------------- 745 (917)
Q Consensus 690 vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg----~~Lasgs~dG~I~iwDl~~~-------------------- 745 (917)
+|+...+. ........+|...|.+++|+|++ +++++|+.||.|++||++++
T Consensus 196 ~~~~~~~~-----~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 270 (351)
T 3f3f_A 196 YQRGKDGK-----LHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSA 270 (351)
T ss_dssp EEECTTSC-----EEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC-------------------
T ss_pred EEccCCCc-----eeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCc
Confidence 88876541 11244456789999999999998 89999999999999999864
Q ss_pred --------------------------eeeEEecCCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeEE
Q psy3053 746 --------------------------LMTQQLSDDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQV 791 (917)
Q Consensus 746 --------------------------~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~tg~~i 791 (917)
+.+..+. +|...|++++|+|++++|++++.||.|++||+.+++..
T Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~ 341 (351)
T 3f3f_A 271 DVDMDAQGRSDSNTEEKAELQSNLQVELLSEHD-DHNGEVWSVSWNLTGTILSSAGDDGKVRLWKATYSNEF 341 (351)
T ss_dssp --------------------CCSEEEEEEEEEC-TTSSCEEEEEECSSSCCEEEEETTSCEEEEEECTTSCE
T ss_pred ccccccccccccccceeeeecccccccEEEEEe-cccccEEEEEEcCCCCEEEEecCCCcEEEEecCcCcch
Confidence 4455555 78899999999999999999999999999999887544
No 129
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.93 E-value=3.3e-24 Score=245.94 Aligned_cols=296 Identities=11% Similarity=0.091 Sum_probs=230.6
Q ss_pred cceEEEEEeCCCc-EEEEEe----cCC----ceEEEec--cCCcee--eeeeccccceEEEEEeC--------------C
Q psy3053 581 EAITAVAICGEGI-SVASVG----RDA----MLKIHSL--KTGRQE--RSAVLSSMTLSSLCILP--------------D 633 (917)
Q Consensus 581 ~~Vtsv~fSpdg~-~Lasgs----~Dg----~I~IWd~--~t~~~~--~~~~~~~~~V~sl~~sp--------------d 633 (917)
..|...+|++.|. .+++|+ .|| .+++||+ .+++.+ ..+.+|...+..+++.+ .
T Consensus 63 ~~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~ 142 (415)
T 2hqs_A 63 QEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAF 142 (415)
T ss_dssp GGCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCCT
T ss_pred cCcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCcC
Confidence 4566777888775 555765 467 8999999 888877 44777777777666554 2
Q ss_pred CCEEEEEecc------cEEEEEEeccCeeeEEeccCCCceeEEEecCCCCEEEEEECCC---eEEEEeCCCCCCCccCCc
Q psy3053 634 NCTMLVGCWD------SCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGSWDC---TVRVWNTGASWSHMKPSK 704 (917)
Q Consensus 634 ~~~Lasgs~D------g~I~Iwdl~tg~~i~~l~~H~~~Vt~l~~spd~~~L~Sgs~Dg---tI~vWdl~~~~~~~~~~~ 704 (917)
+..++.++.+ +.|++||++ +.....+.+|.+.|.+++|+|+|+.|++++.|+ .|++||+.++
T Consensus 143 ~~~l~~~s~~~~~~~~~~i~i~d~~-g~~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg-------- 213 (415)
T 2hqs_A 143 RTRIAYVVQTNGGQFPYELRVSDYD-GYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANG-------- 213 (415)
T ss_dssp TCEEEEEEECSSSSCCEEEEEEETT-SCSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTC--------
T ss_pred CCEEEEEEecCCCCccceEEEEcCC-CCCCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCC--------
Confidence 5666666654 799999997 455677888999999999999999999999885 9999999876
Q ss_pred ceeeeccCCCceEEEEEeCCCCEEE-EEECCCe--EEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEEeC-CC--
Q psy3053 705 SLVSQLDLDNRIKCLAISKDNNQLA-VGTEAGE--LIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCGN-NC-- 778 (917)
Q Consensus 705 ~~~~~~~h~~~V~~l~~spdg~~La-sgs~dG~--I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~-Dg-- 778 (917)
.......+...+.+++|+|+|+.|+ +++.+|. |++||+.+++. ..+. .+...+.+++|+|||+.|++++. ++
T Consensus 214 ~~~~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~-~~~~~~~~~~~spdg~~l~~~s~~~g~~ 291 (415)
T 2hqs_A 214 AVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI-RQVT-DGRSNNTEPTWFPDSQNLAFTSDQAGRP 291 (415)
T ss_dssp CEEEEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EECC-CCSSCEEEEEECTTSSEEEEEECTTSSC
T ss_pred cEEEeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCE-EeCc-CCCCcccceEECCCCCEEEEEECCCCCc
Confidence 2234556778899999999999888 5666654 99999998876 4444 57788999999999999998886 44
Q ss_pred eEEEEECCCCeEEEEeecCCceEEEEEeCCCE-EEEEeCC---CeEEEEECCCCEEEEEEecCCCceEEE--eecCCEEE
Q psy3053 779 MLNVYDLTTGMQVCNKVFEEKLLCLSWAGEEK-VILGGAL---GMVYLVDLIQVQLLKQVRAHKDAVLSL--HFDNCTML 852 (917)
Q Consensus 779 ~I~iwDl~tg~~i~~~~~~~~i~~l~~s~~~~-lv~gs~d---G~I~vwdl~~~~~i~~l~~h~~~V~si--s~dg~~La 852 (917)
.|.+||+.+++..........+.+++|+|++. +++++.+ +.|++||+.+++.. .+..+. .+.++ +|+|+.|+
T Consensus 292 ~i~~~d~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~-~l~~~~-~~~~~~~spdg~~l~ 369 (415)
T 2hqs_A 292 QVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLSSTF-LDETPSLAPNGTMVI 369 (415)
T ss_dssp EEEEEETTSSCCEECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEE-ECCCSS-SCEEEEECTTSSEEE
T ss_pred EEEEEECCCCCEEEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEE-EecCCC-CcCCeEEcCCCCEEE
Confidence 68888998887544444556788999999875 4445443 58999999988774 455443 56555 77999999
Q ss_pred EEeCCC---eEEEEECcCCeEEEEecCCCCCEEEEEEcCCC
Q psy3053 853 VGCWDS---CVVIYDVECGRIVTELAGHEDAISCVAWDEKR 890 (917)
Q Consensus 853 sgs~DG---~I~Iwdl~tg~~l~~l~~h~~~V~slafSpdg 890 (917)
+++.++ .|++||+. +.....+.+|.+.|.+++|+|..
T Consensus 370 ~~s~~~~~~~l~~~d~~-g~~~~~l~~~~~~v~~~~~~~~~ 409 (415)
T 2hqs_A 370 YSSSQGMGSVLNLVSTD-GRFKARLPATDGQVKFPAWSPYL 409 (415)
T ss_dssp EEEEETTEEEEEEEETT-SCCEEECCCSSSEEEEEEECCCC
T ss_pred EEEcCCCccEEEEEECC-CCcEEEeeCCCCCCcCCcccccc
Confidence 988877 79999987 56677889999999999999964
No 130
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.93 E-value=1.3e-23 Score=229.92 Aligned_cols=257 Identities=16% Similarity=0.118 Sum_probs=189.9
Q ss_pred ccccCCccc--cceeeeccCCcceEEEEEeCCCcEEEEEecCCceEEEeccCCceeeeeeccccceEEEEEeCC----CC
Q psy3053 562 NSWCDKSIL--EPLHFCHSHKEAITAVAICGEGISVASVGRDAMLKIHSLKTGRQERSAVLSSMTLSSLCILPD----NC 635 (917)
Q Consensus 562 ~~w~~~~~l--~~~~~l~~H~~~Vtsv~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~~~~~~~~V~sl~~spd----~~ 635 (917)
.+|+..... +.+++++.|..+|..+++.||..-|+...- -..+...|.+++++|| +.
T Consensus 66 ~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-----------------~~~~~~~v~sla~spd~~~~~~ 128 (356)
T 2w18_A 66 SLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVAL-----------------GNLEIREIRALFCSSDDESEKQ 128 (356)
T ss_dssp EEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEEE-----------------CSSSEEEEEEECC------CCE
T ss_pred EEcccCCCccceeeEEEeccCceeEEEEEcCcccceeeeee-----------------ccccccceEEEEECCCcccccc
Confidence 578876643 678999999999999999998644433221 1124457889999999 89
Q ss_pred EEEEEecccEEEEEEeccCeeeEE-eccCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCC
Q psy3053 636 TMLVGCWDSCVVIYDVECGRIVTE-LAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDN 714 (917)
Q Consensus 636 ~Lasgs~Dg~I~Iwdl~tg~~i~~-l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~ 714 (917)
.+++++.+ +.+|++.+++.+.. ..+|...|..++++|+|+.++ ....|..
T Consensus 129 ~l~s~g~~--~~v~~l~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~---------------------------s~~~~~~ 179 (356)
T 2w18_A 129 VLLKSGNI--KAVLGLTKRRLVSSSGTLSDQQVEVMTFAEDGGGKE---------------------------NQFLMPP 179 (356)
T ss_dssp EEEEEEEE--EEEEEETTTEEEEEESSSTTCEEEEEEECTTSCEEE---------------------------EEEECCC
T ss_pred EEEeCCCe--EEEEecCCCcEEEecccCCCCcEEEEEECCCCceee---------------------------eeccCCC
Confidence 99998844 77787766665555 345555555555555554443 2346777
Q ss_pred ceEEEEEeC---CCCEEEEEECCCeEEEEECCCCeeeEEecCCC--CCCeEEEEEecCCCEE------------EEEeCC
Q psy3053 715 RIKCLAISK---DNNQLAVGTEAGELIIWSLENHLMTQQLSDDI--NASVNGVLFSEDGCRV------------LSCGNN 777 (917)
Q Consensus 715 ~V~~l~~sp---dg~~Lasgs~dG~I~iwDl~~~~~~~~l~~~h--~~~V~~v~fspdg~~L------------~s~s~D 777 (917)
.++.++|++ ++..|++|+.|++|++||+.+++.++++..++ ...+.+++|+|+|..+ ++|+.|
T Consensus 180 ~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D 259 (356)
T 2w18_A 180 EETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPV 259 (356)
T ss_dssp SSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CC
T ss_pred ceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCC
Confidence 888899999 77999999999999999999999999997332 3478888999999876 567789
Q ss_pred CeEEEEECCCCeEEEEee------cCCceEEEEEeCCCEEEEEeCCCeEEEEECCCCEEEEEEecCCCceE---EEeecC
Q psy3053 778 CMLNVYDLTTGMQVCNKV------FEEKLLCLSWAGEEKVILGGALGMVYLVDLIQVQLLKQVRAHKDAVL---SLHFDN 848 (917)
Q Consensus 778 g~I~iwDl~tg~~i~~~~------~~~~i~~l~~s~~~~lv~gs~dG~I~vwdl~~~~~i~~l~~h~~~V~---sis~dg 848 (917)
+++++||..+++.+.... +.....+..+++. .+++|+.||+|++||+.+++.+.++.+|...+. +++|||
T Consensus 260 ~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~sg~-~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG 338 (356)
T 2w18_A 260 FQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDVKDH-CAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTD 338 (356)
T ss_dssp EEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEEETT-EEEEEETTSCEEEEETTTCSEEEEECCC--CCCCEEEECSSS
T ss_pred cEEEEEECCCCEEEEEEEeeccCCCcceeEccccCCC-EEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEECCCC
Confidence 999999999998876542 2223444455533 788899999999999999999999999876543 348899
Q ss_pred CEEEEEeCCCeEEEEEC
Q psy3053 849 CTMLVGCWDSCVVIYDV 865 (917)
Q Consensus 849 ~~Lasgs~DG~I~Iwdl 865 (917)
++|++|+.|++|+|||+
T Consensus 339 ~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 339 SHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp SEEEEECTTSCEEEEEE
T ss_pred CEEEEEECCCcEEEecC
Confidence 99999999999999985
No 131
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.92 E-value=1.6e-23 Score=267.97 Aligned_cols=337 Identities=13% Similarity=0.055 Sum_probs=258.8
Q ss_pred cccCCccccceeeeccCCcceEEEEEeCCCcEEEEEecC------CceEEEeccCCceeeeeeccccce-------EEEE
Q psy3053 563 SWCDKSILEPLHFCHSHKEAITAVAICGEGISVASVGRD------AMLKIHSLKTGRQERSAVLSSMTL-------SSLC 629 (917)
Q Consensus 563 ~w~~~~~l~~~~~l~~H~~~Vtsv~fSpdg~~Lasgs~D------g~I~IWd~~t~~~~~~~~~~~~~V-------~sl~ 629 (917)
+|+...+ ....+.+|.+.|.+++|||||++||+++.+ ..|.+|++.+++ .+.+..|...+ .+++
T Consensus 37 ~~~~~gg--~~~~lt~~~~~v~~~~~SPDG~~la~~s~~~~~~~~~~i~~~d~~~g~-~~~lt~~~~~~~~~~~~~~~~~ 113 (1045)
T 1k32_A 37 EHDLKSG--STRKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGE-IKRITYFSGKSTGRRMFTDVAG 113 (1045)
T ss_dssp EEETTTC--CEEEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTE-EEECCCCCEEEETTEECSEEEE
T ss_pred EEECCCC--cEEEeeeCCCcccCeEECCCCCEEEEEEeeccCCCCCeEEEEECCCCC-eEEcccCCCccccccccccccc
Confidence 4554332 345678899999999999999999988654 379999998776 56677777777 8999
Q ss_pred EeCCCCEEEEEecc------cEEEEEEeccCeee----------------------------------------------
Q psy3053 630 ILPDNCTMLVGCWD------SCVVIYDVECGRIV---------------------------------------------- 657 (917)
Q Consensus 630 ~spd~~~Lasgs~D------g~I~Iwdl~tg~~i---------------------------------------------- 657 (917)
|+|||+++++++.+ ..|++|++.+++..
T Consensus 114 ~SpDg~ll~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~spG~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~ 193 (1045)
T 1k32_A 114 FDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVPLNLGPATHILFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNS 193 (1045)
T ss_dssp ECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEECCSCSCSEEEEETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEET
T ss_pred CCCCCEEEEEECCcCCCcccceEEEEECCCCCeEEecCCCcceeeeCCCEEEEeccCCCccccccccCCCcCCEEEECCC
Confidence 99999977777654 46888887766432
Q ss_pred ---EEeccCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEEEECC
Q psy3053 658 ---TELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEA 734 (917)
Q Consensus 658 ---~~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~d 734 (917)
..+.+|...+.+++|+++ ..+++++.|+++.+|.+.... ........+. .+.+.+|+|+|+.++++. +
T Consensus 194 ~~~~~l~~~~~~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~g------~~~~~l~~~~-~~~~~~~SpDG~~la~~~-~ 264 (1045)
T 1k32_A 194 GAFKKIVDMSTHVSSPVIVGH-RIYFITDIDGFGQIYSTDLDG------KDLRKHTSFT-DYYPRHLNTDGRRILFSK-G 264 (1045)
T ss_dssp TEEEEEECCSSCCEEEEEETT-EEEEEECTTSSCEEEEEETTS------CSCEECCCCC-SSCEEEEEESSSCEEEEE-T
T ss_pred CCeEECcCCCCcccceEEeCC-EEEEEEeccCceEEEEEeCCC------CcceEecCCC-CcceeeEcCCCCEEEEEe-C
Confidence 123457778888899887 666778888999999865421 1112222333 466789999999998874 8
Q ss_pred CeEEEEECCCCeeeEEecCC----------CCCCeEEEEEe-cCCCEEEEEeCCCeEEEEECCCCeEEEEeecCC-ceEE
Q psy3053 735 GELIIWSLENHLMTQQLSDD----------INASVNGVLFS-EDGCRVLSCGNNCMLNVYDLTTGMQVCNKVFEE-KLLC 802 (917)
Q Consensus 735 G~I~iwDl~~~~~~~~l~~~----------h~~~V~~v~fs-pdg~~L~s~s~Dg~I~iwDl~tg~~i~~~~~~~-~i~~ 802 (917)
+.|.+||+.... +..+... +...+.+++|+ |||+.+++++ ++.+.+|+..++.......+.. .+.+
T Consensus 265 ~~i~~~d~~~~~-l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~ 342 (1045)
T 1k32_A 265 GSIYIFNPDTEK-IEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLKVPEPLRIRYVR 342 (1045)
T ss_dssp TEEEEECTTTCC-EEECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSBEEECSCCSCEEEEE
T ss_pred CEEEEecCCceE-eeeeccCcccccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCceEEccCCCcceEEe
Confidence 999999995544 3344421 23468999999 9999999888 7899999999887665545555 7888
Q ss_pred EEEeCCCE-EEEEeCCCeEE-EEECCCCEEEEEEecCCCceEEE--eecCCEEEEEeCCCeEEEEECcCCeEEEEecCCC
Q psy3053 803 LSWAGEEK-VILGGALGMVY-LVDLIQVQLLKQVRAHKDAVLSL--HFDNCTMLVGCWDSCVVIYDVECGRIVTELAGHE 878 (917)
Q Consensus 803 l~~s~~~~-lv~gs~dG~I~-vwdl~~~~~i~~l~~h~~~V~si--s~dg~~Lasgs~DG~I~Iwdl~tg~~l~~l~~h~ 878 (917)
++|+ ++. ++.++.++.+. +||+.+++... +.+|...+.++ +|||+.|++++.++.|++||+.+++......+|.
T Consensus 343 ~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~~-l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~ 420 (1045)
T 1k32_A 343 RGGD-TKVAFIHGTREGDFLGIYDYRTGKAEK-FEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSRE 420 (1045)
T ss_dssp ECSS-SEEEEEEEETTEEEEEEEETTTCCEEE-CCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSS
T ss_pred eeEc-CCCeEEEEECCCceEEEEECCCCCceE-ecCCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccCCC
Confidence 9999 764 66777788888 99998876543 44777777776 7799999999999999999999999888887899
Q ss_pred CCEEEEEEcCCCCEEEEEeCCC----------cEEEEecCcceEEEE
Q psy3053 879 DAISCVAWDEKRKRLISGNLVG----------APKLYATEFYLLYVL 915 (917)
Q Consensus 879 ~~V~slafSpdg~~LaSgs~DG----------~V~IWdl~~~ll~~L 915 (917)
+.+.+++|||||++|++++.++ .|++||+++..+..+
T Consensus 421 ~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~~~~l 467 (1045)
T 1k32_A 421 AMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAA 467 (1045)
T ss_dssp SCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEEC
T ss_pred CCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCcEEEe
Confidence 9999999999999999887654 899999987655443
No 132
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.91 E-value=9e-23 Score=233.98 Aligned_cols=280 Identities=16% Similarity=0.116 Sum_probs=219.1
Q ss_pred cceEEEEEeCCCC-EEEEEe----ccc----EEEEEEe--ccCeee--EEeccCCCceeEEEecC--------------C
Q psy3053 623 MTLSSLCILPDNC-TMLVGC----WDS----CVVIYDV--ECGRIV--TELAGHEDAISCVAWDE--------------K 675 (917)
Q Consensus 623 ~~V~sl~~spd~~-~Lasgs----~Dg----~I~Iwdl--~tg~~i--~~l~~H~~~Vt~l~~sp--------------d 675 (917)
..+....|.+.+. .+++|+ .|| .+++||+ .+++.+ ..+.+|...+..+++++ .
T Consensus 63 ~~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~ 142 (415)
T 2hqs_A 63 QEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAF 142 (415)
T ss_dssp GGCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCCT
T ss_pred cCcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCcC
Confidence 3556667777764 565776 357 8999999 899877 55888998888887764 1
Q ss_pred CCEEEEEECC------CeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEEEECCC---eEEEEECCCCe
Q psy3053 676 RKRLISGSWD------CTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAG---ELIIWSLENHL 746 (917)
Q Consensus 676 ~~~L~Sgs~D------gtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~dG---~I~iwDl~~~~ 746 (917)
+..++.++.+ ++|++||+... ......+|...+.+++|+|+|+.|++++.++ .|++||+.+++
T Consensus 143 ~~~l~~~s~~~~~~~~~~i~i~d~~g~--------~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~ 214 (415)
T 2hqs_A 143 RTRIAYVVQTNGGQFPYELRVSDYDGY--------NQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGA 214 (415)
T ss_dssp TCEEEEEEECSSSSCCEEEEEEETTSC--------SCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCC
T ss_pred CCEEEEEEecCCCCccceEEEEcCCCC--------CCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCc
Confidence 5677766654 79999998653 3344556788999999999999999999885 99999999987
Q ss_pred eeEEecCCCCCCeEEEEEecCCCEEE-EEeCCC--eEEEEECCCCeEEEEeecCCceEEEEEeCCCE-EEEEeC-CC--e
Q psy3053 747 MTQQLSDDINASVNGVLFSEDGCRVL-SCGNNC--MLNVYDLTTGMQVCNKVFEEKLLCLSWAGEEK-VILGGA-LG--M 819 (917)
Q Consensus 747 ~~~~l~~~h~~~V~~v~fspdg~~L~-s~s~Dg--~I~iwDl~tg~~i~~~~~~~~i~~l~~s~~~~-lv~gs~-dG--~ 819 (917)
... +. .+...+.+++|+|||+.|+ +++.++ .|++||+.+++......+...+.+++|+|++. +++++. +| .
T Consensus 215 ~~~-l~-~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~ 292 (415)
T 2hqs_A 215 VRQ-VA-SFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQ 292 (415)
T ss_dssp EEE-EE-CCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCE
T ss_pred EEE-ee-cCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCEEeCcCCCCcccceEECCCCCEEEEEECCCCCcE
Confidence 754 33 5677899999999999888 555555 49999999988765556677899999999876 555655 34 7
Q ss_pred EEEEECCCCEEEEEEecCCCceEEE--eecCCEEEEEeCC---CeEEEEECcCCeEEEEecCCCCCEEEEEEcCCCCEEE
Q psy3053 820 VYLVDLIQVQLLKQVRAHKDAVLSL--HFDNCTMLVGCWD---SCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLI 894 (917)
Q Consensus 820 I~vwdl~~~~~i~~l~~h~~~V~si--s~dg~~Lasgs~D---G~I~Iwdl~tg~~l~~l~~h~~~V~slafSpdg~~La 894 (917)
|++||+.+++. ..+..+...+.++ +|+|++|++++.+ +.|++||+.+++.. .+..|. .+.+++|+|+|++|+
T Consensus 293 i~~~d~~~~~~-~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~-~l~~~~-~~~~~~~spdg~~l~ 369 (415)
T 2hqs_A 293 VYKVNINGGAP-QRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLSSTF-LDETPSLAPNGTMVI 369 (415)
T ss_dssp EEEEETTSSCC-EECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEE-ECCCSS-SCEEEEECTTSSEEE
T ss_pred EEEEECCCCCE-EEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEE-EecCCC-CcCCeEEcCCCCEEE
Confidence 88889988764 3455566667665 7799999988764 58999999988874 455554 899999999999999
Q ss_pred EEeCCC---cEEEEecCcceEEEE
Q psy3053 895 SGNLVG---APKLYATEFYLLYVL 915 (917)
Q Consensus 895 Sgs~DG---~V~IWdl~~~ll~~L 915 (917)
+++.++ .|++||+++..+..|
T Consensus 370 ~~s~~~~~~~l~~~d~~g~~~~~l 393 (415)
T 2hqs_A 370 YSSSQGMGSVLNLVSTDGRFKARL 393 (415)
T ss_dssp EEEEETTEEEEEEEETTSCCEEEC
T ss_pred EEEcCCCccEEEEEECCCCcEEEe
Confidence 988877 799999998776655
No 133
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.91 E-value=6.8e-22 Score=241.61 Aligned_cols=319 Identities=12% Similarity=0.043 Sum_probs=226.1
Q ss_pred eEEEEEeCCCcEEEEEecCCceEEEeccCCcee-eeeeccc-----------------cceEEEEEeCCCCEEEEEeccc
Q psy3053 583 ITAVAICGEGISVASVGRDAMLKIHSLKTGRQE-RSAVLSS-----------------MTLSSLCILPDNCTMLVGCWDS 644 (917)
Q Consensus 583 Vtsv~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~-~~~~~~~-----------------~~V~sl~~spd~~~Lasgs~Dg 644 (917)
+..+.|+ |..+++++.|+ | +||+.+++.+ ..+..+. ..+.+++|+|| +.++.+ .++
T Consensus 28 ~~~~~w~--g~~~~~~~~~~-i-~~d~~tg~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd-~~~~~~-~~~ 101 (706)
T 2z3z_A 28 VVGLQWM--GDNYVFIEGDD-L-VFNKANGKSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGR-GLVVLF-TQG 101 (706)
T ss_dssp CTTCEEE--TTEEEEEETTE-E-EEEC-------CEEEEHHHHHTTC-----------CCCEEEEETTT-TEEEEE-ETT
T ss_pred CCCCcCc--CCeEEEEeCCc-E-EEECCCCcEeeEEeechhHhhhhccchhccccccccCceeEEECCC-CeEEEE-ECC
Confidence 5557788 66777777888 8 9999998873 3333332 46999999999 666655 469
Q ss_pred EEEEEEeccCeeeEEeccCCCceeEEEecCCCCEEEEEECCCeEEEEeCCC-----CCCCccCCccee-------eeccC
Q psy3053 645 CVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGA-----SWSHMKPSKSLV-------SQLDL 712 (917)
Q Consensus 645 ~I~Iwdl~tg~~i~~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~-----~~~~~~~~~~~~-------~~~~h 712 (917)
.|++||+.+++... +..+...+.+++|+|||+.|+++ .|+.|.+||+.+ +........... ....+
T Consensus 102 ~i~~~d~~~~~~~~-l~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee 179 (706)
T 2z3z_A 102 GLVGFDMLARKVTY-LFDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQRE 179 (706)
T ss_dssp EEEEEETTTTEEEE-EECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGGC
T ss_pred EEEEEECCCCceEE-ccCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCCeEcccchhhhh
Confidence 99999999887654 44567789999999999999995 689999999987 421100000000 00001
Q ss_pred CCceEEEEEeCCCCEEEEEE---------------------------------CCCeEEEEECCCCeeeEEecC-CCCCC
Q psy3053 713 DNRIKCLAISKDNNQLAVGT---------------------------------EAGELIIWSLENHLMTQQLSD-DINAS 758 (917)
Q Consensus 713 ~~~V~~l~~spdg~~Lasgs---------------------------------~dG~I~iwDl~~~~~~~~l~~-~h~~~ 758 (917)
...+.+++|+|||+.|++++ .++.|.+||+.+++....... .+...
T Consensus 180 ~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~ 259 (706)
T 2z3z_A 180 FGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKF 259 (706)
T ss_dssp TTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCE
T ss_pred cCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCcee
Confidence 12258999999999999987 457899999999886554432 45677
Q ss_pred eEEEEEecCCCEEEEEeCCC-----eEEEEECCCC-eEEEEe--ecCC---ceEEEEEeC--CCEEE-EEeCCCeEEEEE
Q psy3053 759 VNGVLFSEDGCRVLSCGNNC-----MLNVYDLTTG-MQVCNK--VFEE---KLLCLSWAG--EEKVI-LGGALGMVYLVD 824 (917)
Q Consensus 759 V~~v~fspdg~~L~s~s~Dg-----~I~iwDl~tg-~~i~~~--~~~~---~i~~l~~s~--~~~lv-~gs~dG~I~vwd 824 (917)
+.+++|+|||+.|++++.++ .|.+||+.++ ...... .... .+.+++|++ ++.++ +++.+|.+.+|+
T Consensus 260 ~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~ 339 (706)
T 2z3z_A 260 LTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYL 339 (706)
T ss_dssp EEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEE
T ss_pred EeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCCccEEEE
Confidence 99999999999999988775 8999999998 333222 1221 235678998 87654 566778888888
Q ss_pred CC-CCEEEEEEecCCCceEE---EeecCCEEEEEeC-CC----eEEEEECcCCeEEEEecCCCCCEEEEEEcCCCCEEEE
Q psy3053 825 LI-QVQLLKQVRAHKDAVLS---LHFDNCTMLVGCW-DS----CVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLIS 895 (917)
Q Consensus 825 l~-~~~~i~~l~~h~~~V~s---is~dg~~Lasgs~-DG----~I~Iwdl~tg~~l~~l~~h~~~V~slafSpdg~~LaS 895 (917)
+. ++..+..+..+...+.+ ++++++.|+.++. ++ .|..||+.+++ ...+. |...+.+++|||||++++.
T Consensus 340 ~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~-~~~l~-~~~~~~~~~~spdg~~l~~ 417 (706)
T 2z3z_A 340 YDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGK-TKDLT-PESGMHRTQLSPDGSAIID 417 (706)
T ss_dssp EETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCC-CEESC-CSSSEEEEEECTTSSEEEE
T ss_pred EECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCC-ceecc-CCCceEEEEECCCCCEEEE
Confidence 76 67777888877777754 4778988766554 44 67777877766 33444 6778999999999999887
Q ss_pred EeCC----CcEEEEecCcce
Q psy3053 896 GNLV----GAPKLYATEFYL 911 (917)
Q Consensus 896 gs~D----G~V~IWdl~~~l 911 (917)
++.+ +.|++||+++..
T Consensus 418 ~~~~~~~p~~i~l~d~~~~~ 437 (706)
T 2z3z_A 418 IFQSPTVPRKVTVTNIGKGS 437 (706)
T ss_dssp EEECSSCSCEEEEEESSSCE
T ss_pred EecCCCCCcEEEEEECCCCe
Confidence 6544 569999998765
No 134
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.90 E-value=6.1e-22 Score=234.92 Aligned_cols=272 Identities=11% Similarity=0.087 Sum_probs=221.5
Q ss_pred EeCCCCEEEEEecccEEEEEEeccCeeeEEeccCCCceeEEEecCCCCEEEEEECCCeEEEEeC--CCCCCCccCCccee
Q psy3053 630 ILPDNCTMLVGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNT--GASWSHMKPSKSLV 707 (917)
Q Consensus 630 ~spd~~~Lasgs~Dg~I~Iwdl~tg~~i~~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl--~~~~~~~~~~~~~~ 707 (917)
++|++..+++++.|++|.+||..+++++.++..+.. +.+++|+|++++|++++.|++|.+||+ .++ ...
T Consensus 145 ~~p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~-~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~--------~~~ 215 (543)
T 1nir_A 145 LDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDLWAKEP--------TKV 215 (543)
T ss_dssp CCGGGEEEEEEGGGTEEEEEETTTCCEEEEEECSTT-EEEEEECTTSCEEEEEETTSEEEEEETTSSSC--------EEE
T ss_pred cCCCCEEEEEEcCCCeEEEEECCCceEEEEEecCcc-cceEEECCCCCEEEEECCCCeEEEEECcCCCC--------cEE
Confidence 678888999999999999999999999999884433 889999999999999999999999999 443 223
Q ss_pred eeccCCCceEEEEEeC----CCCEEEEEEC-CCeEEEEECCCCeeeEEecCC---------C-CCCeEEEEEecCCCE-E
Q psy3053 708 SQLDLDNRIKCLAISK----DNNQLAVGTE-AGELIIWSLENHLMTQQLSDD---------I-NASVNGVLFSEDGCR-V 771 (917)
Q Consensus 708 ~~~~h~~~V~~l~~sp----dg~~Lasgs~-dG~I~iwDl~~~~~~~~l~~~---------h-~~~V~~v~fspdg~~-L 771 (917)
....+...+..++|+| +|+++++++. +++|.+||..+++.+..+... | ...+.++.++|++.. +
T Consensus 216 ~~i~~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~ 295 (543)
T 1nir_A 216 AEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFI 295 (543)
T ss_dssp EEEECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEE
T ss_pred EEEecCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEE
Confidence 3334566789999999 9999998884 899999999999988887621 1 237899999997665 5
Q ss_pred EEEeCCCeEEEEECCCCeEEE--EeecCCceEEEEEeCCCE-EEEE-eCCCeEEEEECCCCEEEEEEec----CCCceEE
Q psy3053 772 LSCGNNCMLNVYDLTTGMQVC--NKVFEEKLLCLSWAGEEK-VILG-GALGMVYLVDLIQVQLLKQVRA----HKDAVLS 843 (917)
Q Consensus 772 ~s~s~Dg~I~iwDl~tg~~i~--~~~~~~~i~~l~~s~~~~-lv~g-s~dG~I~vwdl~~~~~i~~l~~----h~~~V~s 843 (917)
++...++.|.+||..+++.+. .......+..++|+|++. ++++ ..+++|.+||..+++++..+.. |.+....
T Consensus 296 vs~~~~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~ 375 (543)
T 1nir_A 296 VNVKETGKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGAN 375 (543)
T ss_dssp EEETTTTEEEEEECTTSSSCEEEEEECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEE
T ss_pred EEECCCCeEEEEEecCCCcceeEEeccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCcc
Confidence 566678999999998764332 455566688899999876 4444 4579999999999999988874 6544444
Q ss_pred E-eec-CCEEEEEe-CCCeEEEEECcC-------CeEEEEecCCCCCEEEEEEcCCCCEEEEEe-------CCCcEEEEe
Q psy3053 844 L-HFD-NCTMLVGC-WDSCVVIYDVEC-------GRIVTELAGHEDAISCVAWDEKRKRLISGN-------LVGAPKLYA 906 (917)
Q Consensus 844 i-s~d-g~~Lasgs-~DG~I~Iwdl~t-------g~~l~~l~~h~~~V~slafSpdg~~LaSgs-------~DG~V~IWd 906 (917)
+ +++ +..++++. .|++|.+||+.+ +++++++.+|.+.+..++++|+|++|++++ .+++|.|||
T Consensus 376 ~~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d 455 (543)
T 1nir_A 376 FVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFD 455 (543)
T ss_dssp EEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEE
T ss_pred cCCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEE
Confidence 4 666 55666665 689999999998 899999999998899999999999999987 378999999
Q ss_pred cCcc
Q psy3053 907 TEFY 910 (917)
Q Consensus 907 l~~~ 910 (917)
+++.
T Consensus 456 ~~~~ 459 (543)
T 1nir_A 456 LKNL 459 (543)
T ss_dssp TTCT
T ss_pred CCCC
Confidence 9843
No 135
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.90 E-value=1.5e-21 Score=249.50 Aligned_cols=337 Identities=11% Similarity=0.020 Sum_probs=256.4
Q ss_pred ccccCCccccceeeeccCCcce-------EEEEEeCCCcEEEEEecC------CceEEEeccCCceee------------
Q psy3053 562 NSWCDKSILEPLHFCHSHKEAI-------TAVAICGEGISVASVGRD------AMLKIHSLKTGRQER------------ 616 (917)
Q Consensus 562 ~~w~~~~~l~~~~~l~~H~~~V-------tsv~fSpdg~~Lasgs~D------g~I~IWd~~t~~~~~------------ 616 (917)
.+|+...+ ....+..|...+ .+++|||||+.+++++.+ ..|.+|++.+++...
T Consensus 83 ~~~d~~~g--~~~~lt~~~~~~~~~~~~~~~~~~SpDg~ll~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~s 160 (1045)
T 1k32_A 83 YFYNGENG--EIKRITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVPLNLGPATHILFA 160 (1045)
T ss_dssp EEEETTTT--EEEECCCCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEECCSCSCSEEEEE
T ss_pred EEEECCCC--CeEEcccCCCcccccccccccccCCCCCEEEEEECCcCCCcccceEEEEECCCCCeEEecCCCcceeeeC
Confidence 35664433 256778899888 999999999977777754 347777776554321
Q ss_pred -------------------------------------eeeccccceEEEEEeCCCCEEEEEecccEEEEEEecc-CeeeE
Q psy3053 617 -------------------------------------SAVLSSMTLSSLCILPDNCTMLVGCWDSCVVIYDVEC-GRIVT 658 (917)
Q Consensus 617 -------------------------------------~~~~~~~~V~sl~~spd~~~Lasgs~Dg~I~Iwdl~t-g~~i~ 658 (917)
.+..|...+.++.|+++ .++++++.|+.+.+|.++. +....
T Consensus 161 pG~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~~~~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~g~~~~ 239 (1045)
T 1k32_A 161 DGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPVIVGH-RIYFITDIDGFGQIYSTDLDGKDLR 239 (1045)
T ss_dssp TTEEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCSSCCEEEEEETT-EEEEEECTTSSCEEEEEETTSCSCE
T ss_pred CCEEEEeccCCCccccccccCCCcCCEEEECCCCCeEECcCCCCcccceEEeCC-EEEEEEeccCceEEEEEeCCCCcce
Confidence 11234556777888887 6667778889999998764 44556
Q ss_pred EeccCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCC---cceeeeccCCCceEEEEEe-CCCCEEEEEECC
Q psy3053 659 ELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPS---KSLVSQLDLDNRIKCLAIS-KDNNQLAVGTEA 734 (917)
Q Consensus 659 ~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~---~~~~~~~~h~~~V~~l~~s-pdg~~Lasgs~d 734 (917)
.+..|. .+.+.+|+|+|+.|++++ ++.|.+||+.......... ........+...+.+++|+ |+|+.+++++ +
T Consensus 240 ~l~~~~-~~~~~~~SpDG~~la~~~-~~~i~~~d~~~~~l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~ 316 (1045)
T 1k32_A 240 KHTSFT-DYYPRHLNTDGRRILFSK-GGSIYIFNPDTEKIEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-R 316 (1045)
T ss_dssp ECCCCC-SSCEEEEEESSSCEEEEE-TTEEEEECTTTCCEEECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-T
T ss_pred EecCCC-CcceeeEcCCCCEEEEEe-CCEEEEecCCceEeeeeccCcccccccccccccccceeeecCCCCCEEEEEE-c
Confidence 666665 467789999999998875 8999999984321000000 0000011234578999999 9999999888 7
Q ss_pred CeEEEEECCCCeeeEEecCCCCC-CeEEEEEecCCCEEEEEeCCCeEE-EEECCCCeEEEEeecCCceEEEEEeCCCE-E
Q psy3053 735 GELIIWSLENHLMTQQLSDDINA-SVNGVLFSEDGCRVLSCGNNCMLN-VYDLTTGMQVCNKVFEEKLLCLSWAGEEK-V 811 (917)
Q Consensus 735 G~I~iwDl~~~~~~~~l~~~h~~-~V~~v~fspdg~~L~s~s~Dg~I~-iwDl~tg~~i~~~~~~~~i~~l~~s~~~~-l 811 (917)
+.+.+|++.++.... +. .+.. .+.+++|+ ||+.+++++.++.+. +||+.+++......+...+.+++|+|++. +
T Consensus 317 ~~i~~~~~~~~~~~~-~~-~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~~l~~~~~~~~~~~~SpDG~~l 393 (1045)
T 1k32_A 317 GQAFIQDVSGTYVLK-VP-EPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFA 393 (1045)
T ss_dssp TEEEEECTTSSBEEE-CS-CCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCCEEECCCCCCSEEEEEECTTSSEE
T ss_pred CEEEEEcCCCCceEE-cc-CCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCCceEecCCccceeeeEECCCCCEE
Confidence 899999998876544 44 4556 89999999 999999999888898 99998887655444557799999999875 6
Q ss_pred EEEeCCCeEEEEECCCCEEEEEEecCCCceEEE--eecCCEEEEEeCCC----------eEEEEECcCCeEEEEecCCCC
Q psy3053 812 ILGGALGMVYLVDLIQVQLLKQVRAHKDAVLSL--HFDNCTMLVGCWDS----------CVVIYDVECGRIVTELAGHED 879 (917)
Q Consensus 812 v~gs~dG~I~vwdl~~~~~i~~l~~h~~~V~si--s~dg~~Lasgs~DG----------~I~Iwdl~tg~~l~~l~~h~~ 879 (917)
++++.++.|++||+.+++......+|...+.++ +|||++|++++.++ .|++||+.+++ +..+..|..
T Consensus 394 a~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~-~~~l~~~~~ 472 (1045)
T 1k32_A 394 VVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-IFAATTENS 472 (1045)
T ss_dssp EEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE-EEECSCSSS
T ss_pred EEECCCCeEEEEECCCCceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCc-EEEeeCCCc
Confidence 778889999999999999888877888777665 77999998887654 89999999888 677888888
Q ss_pred CEEEEEEcCCCCEEEEEeCCCcEEEEecC
Q psy3053 880 AISCVAWDEKRKRLISGNLVGAPKLYATE 908 (917)
Q Consensus 880 ~V~slafSpdg~~LaSgs~DG~V~IWdl~ 908 (917)
.+.+++|+|||++|++++.++...+|+..
T Consensus 473 ~~~~~~~spdG~~l~~~s~~~~~~~~~~~ 501 (1045)
T 1k32_A 473 HDYAPAFDADSKNLYYLSYRSLDPSPDRV 501 (1045)
T ss_dssp BEEEEEECTTSCEEEEEESCCCCCEECSS
T ss_pred ccCCceEcCCCCEEEEEecccCCcCcchh
Confidence 89999999999999999999988888764
No 136
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.90 E-value=1.1e-22 Score=249.02 Aligned_cols=307 Identities=10% Similarity=0.013 Sum_probs=223.8
Q ss_pred ceEEEEEeCCCcEEEEEecCCceEEEeccCCceeeeeecccc---ceEEEEEeCCCCEEEEEecc---------cEEEEE
Q psy3053 582 AITAVAICGEGISVASVGRDAMLKIHSLKTGRQERSAVLSSM---TLSSLCILPDNCTMLVGCWD---------SCVVIY 649 (917)
Q Consensus 582 ~Vtsv~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~~~~~~~---~V~sl~~spd~~~Lasgs~D---------g~I~Iw 649 (917)
.+.+++|+|||+++++ +.||+|++||+.+++....+..+.. .+.+++|+|||++|++++.+ +.+++|
T Consensus 18 ~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~ 96 (723)
T 1xfd_A 18 HDPEAKWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLS 96 (723)
T ss_dssp CCCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEE
T ss_pred cccccEEcCCCcEEEE-eCCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEE
Confidence 4678999999997776 7899999999999988777766654 48999999999999999764 789999
Q ss_pred EeccCeee--EEeccCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCC-------------
Q psy3053 650 DVECGRIV--TELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDN------------- 714 (917)
Q Consensus 650 dl~tg~~i--~~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~------------- 714 (917)
|+.+++.. ....+|...+.+++|+|||+.|++++. +.|.+||+.++.. ......+..
T Consensus 97 d~~~~~~~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~-------~~~~~~~~~~~~~~g~~~~v~~ 168 (723)
T 1xfd_A 97 KIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQA-------IRVVSTGKEGVIYNGLSDWLYE 168 (723)
T ss_dssp ESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCC-------EEEECCCBTTTEEEEECCHHHH
T ss_pred ECCCCceEeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCce-------EEEecCCCCCceECcccceeEE
Confidence 99988762 222345556899999999999999886 7999999977521 111111111
Q ss_pred -----ceEEEEEeCCCCEEEEEECCC----------------------------------eEEEEECCCCeeeEEecCC-
Q psy3053 715 -----RIKCLAISKDNNQLAVGTEAG----------------------------------ELIIWSLENHLMTQQLSDD- 754 (917)
Q Consensus 715 -----~V~~l~~spdg~~Lasgs~dG----------------------------------~I~iwDl~~~~~~~~l~~~- 754 (917)
.+.+++|+|||+.|++++.++ .|.+||+.+++....+...
T Consensus 169 ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~ 248 (723)
T 1xfd_A 169 EEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPD 248 (723)
T ss_dssp HTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCC
T ss_pred EEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCc
Confidence 347899999999999987543 7999999988865666522
Q ss_pred ----CCCCeEEEEEecCCCEEEEEeC----CCeEEEEECCCCeEEEEee--cCCce----EEEEEeCCCE-EE-E-EeCC
Q psy3053 755 ----INASVNGVLFSEDGCRVLSCGN----NCMLNVYDLTTGMQVCNKV--FEEKL----LCLSWAGEEK-VI-L-GGAL 817 (917)
Q Consensus 755 ----h~~~V~~v~fspdg~~L~s~s~----Dg~I~iwDl~tg~~i~~~~--~~~~i----~~l~~s~~~~-lv-~-gs~d 817 (917)
+...+.+++|+|||+.+++.+. +..|.+||+.+++...... ....+ ..++|+|++. ++ + +..+
T Consensus 249 ~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~ 328 (723)
T 1xfd_A 249 DPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQ 328 (723)
T ss_dssp CGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECC
T ss_pred cCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEeccc
Confidence 2567899999999998877653 3579999999987665432 22322 3778998876 33 2 4566
Q ss_pred C------eEEEEE-CCCCE--EEEEEecCCCceE---EEeecCCEEEEEeCC---CeEEEEECcCCe--EEEEecC---C
Q psy3053 818 G------MVYLVD-LIQVQ--LLKQVRAHKDAVL---SLHFDNCTMLVGCWD---SCVVIYDVECGR--IVTELAG---H 877 (917)
Q Consensus 818 G------~I~vwd-l~~~~--~i~~l~~h~~~V~---sis~dg~~Lasgs~D---G~I~Iwdl~tg~--~l~~l~~---h 877 (917)
| .|++|| ..++. ....+..+...+. ++++||+.|+..+.+ +.+++|++.... ....+.. |
T Consensus 329 ~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~ 408 (723)
T 1xfd_A 329 GGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCDLVE 408 (723)
T ss_dssp SSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCCCBCSSTTSSS
T ss_pred CCCcceeEEEEEeccCCCCccceeEeecCCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeCCCCCCcceecccccC
Confidence 6 577788 34443 1444443333333 458899998766655 789999986432 3334443 6
Q ss_pred CCCEEEEEEcCCCCEEEEEe
Q psy3053 878 EDAISCVAWDEKRKRLISGN 897 (917)
Q Consensus 878 ~~~V~slafSpdg~~LaSgs 897 (917)
...+..++|+|||++|+...
T Consensus 409 ~~~~~~~~~spdg~~l~~~~ 428 (723)
T 1xfd_A 409 NCTYFSASFSHSMDFFLLKC 428 (723)
T ss_dssp SCCCCEEEECTTSSEEEEEC
T ss_pred CCCeEEEEECCCCCEEEEEc
Confidence 67789999999999888653
No 137
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.89 E-value=1.1e-20 Score=207.68 Aligned_cols=280 Identities=9% Similarity=0.061 Sum_probs=207.8
Q ss_pred EEeCCCcE-EEEEecCCceEEEeccCCceeeeeeccccceEEEEEeCCCCEEEEEec-ccEEEEEEeccCee-eEEeccC
Q psy3053 587 AICGEGIS-VASVGRDAMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTMLVGCW-DSCVVIYDVECGRI-VTELAGH 663 (917)
Q Consensus 587 ~fSpdg~~-Lasgs~Dg~I~IWd~~t~~~~~~~~~~~~~V~sl~~spd~~~Lasgs~-Dg~I~Iwdl~tg~~-i~~l~~H 663 (917)
.|.++++. +++++.++.|.+||..+++....+..+.... +++|+|+++.+++++. ++.|.+||..+++. ...+..+
T Consensus 4 ~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~ 82 (331)
T 3u4y_A 4 MFQTTSNFGIVVEQHLRRISFFSTDTLEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEG 82 (331)
T ss_dssp ---CCCCEEEEEEGGGTEEEEEETTTCCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEEC
T ss_pred eEcCCCCEEEEEecCCCeEEEEeCcccceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccC
Confidence 45565554 6677789999999999999888877766666 9999999997776665 89999999999987 7777777
Q ss_pred CCceeEEEecCCCCEEEEEECCC---eEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEE-EECCCe-EE
Q psy3053 664 EDAISCVAWDEKRKRLISGSWDC---TVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAV-GTEAGE-LI 738 (917)
Q Consensus 664 ~~~Vt~l~~spd~~~L~Sgs~Dg---tI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Las-gs~dG~-I~ 738 (917)
..+..+++|+|++++++++..++ .|.+||+.++ ...........+.+++|+|+|+.+++ +..++. +.
T Consensus 83 ~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~--------~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~i~ 154 (331)
T 3u4y_A 83 QSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKN--------KFISTIPIPYDAVGIAISPNGNGLILIDRSSANTVR 154 (331)
T ss_dssp SSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTT--------EEEEEEECCTTEEEEEECTTSSCEEEEEETTTTEEE
T ss_pred CCCccceEECCCCCEEEEecCCCCcccEEEEECCCC--------CeEEEEECCCCccceEECCCCCEEEEEecCCCceEE
Confidence 77776699999999999655553 8999999776 22333344566799999999985554 455588 99
Q ss_pred EEECCCCeee----EEecCCCCCCeEEEEEecCCCEEEEEe-CCCeEEEEECCCCeE---EEEeecCCceEEEEEeCCCE
Q psy3053 739 IWSLENHLMT----QQLSDDINASVNGVLFSEDGCRVLSCG-NNCMLNVYDLTTGMQ---VCNKVFEEKLLCLSWAGEEK 810 (917)
Q Consensus 739 iwDl~~~~~~----~~l~~~h~~~V~~v~fspdg~~L~s~s-~Dg~I~iwDl~tg~~---i~~~~~~~~i~~l~~s~~~~ 810 (917)
+|++.....+ .... .....+.+++|+|+|+++++++ .++.|.+||+.+++. +........+.+++++|++.
T Consensus 155 ~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~ 233 (331)
T 3u4y_A 155 RFKIDADGVLFDTGQEFI-SGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGTNNLPGTIVVSRDGS 233 (331)
T ss_dssp EEEECTTCCEEEEEEEEE-CSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEECSSCCCCEEECTTSS
T ss_pred EEEECCCCcEeecCCccc-cCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccCCCCCceEEECCCCC
Confidence 9998754332 1111 3445689999999999766555 688999999998887 77777777888999999877
Q ss_pred -EEEEe-CCCeEEEEECCCCEE--EEEEecC----CCce-----EEEeecCCEEEEEeC-CCeEEEEECcCCeEEEEecC
Q psy3053 811 -VILGG-ALGMVYLVDLIQVQL--LKQVRAH----KDAV-----LSLHFDNCTMLVGCW-DSCVVIYDVECGRIVTELAG 876 (917)
Q Consensus 811 -lv~gs-~dG~I~vwdl~~~~~--i~~l~~h----~~~V-----~sis~dg~~Lasgs~-DG~I~Iwdl~tg~~l~~l~~ 876 (917)
+++++ .++.|.+||+.+++. +..+..+ .... .++++++++|++++. ++.|.+||+..... ..+.+
T Consensus 234 ~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~-~~~~~ 312 (331)
T 3u4y_A 234 TVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFTISGKVV-GYVAG 312 (331)
T ss_dssp EEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTSCEE-EECTT
T ss_pred EEEEEEcCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEEecCCcc-cceec
Confidence 44443 468899999999887 4444432 2222 367899998866655 57999999986543 33433
Q ss_pred C
Q psy3053 877 H 877 (917)
Q Consensus 877 h 877 (917)
.
T Consensus 313 ~ 313 (331)
T 3u4y_A 313 I 313 (331)
T ss_dssp C
T ss_pred c
Confidence 3
No 138
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.89 E-value=7e-20 Score=202.66 Aligned_cols=270 Identities=12% Similarity=0.080 Sum_probs=209.3
Q ss_pred CcceEEEEEeCCCcEEEEEec-------CCceEEEeccCCceeeeeeccccceEEEEEeCCCCEEEEE-ecccEEEEEEe
Q psy3053 580 KEAITAVAICGEGISVASVGR-------DAMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTMLVG-CWDSCVVIYDV 651 (917)
Q Consensus 580 ~~~Vtsv~fSpdg~~Lasgs~-------Dg~I~IWd~~t~~~~~~~~~~~~~V~sl~~spd~~~Lasg-s~Dg~I~Iwdl 651 (917)
...+..++++|+|+.+++++. ++.|.+||..+++....+... ..+..++++|+++.++++ ..++.|.+||.
T Consensus 40 ~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~ 118 (353)
T 3vgz_A 40 GKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHND-LKPFGATINNTTQTLWFGNTVNSAVTAIDA 118 (353)
T ss_dssp ESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEES-SCCCSEEEETTTTEEEEEETTTTEEEEEET
T ss_pred ccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecC-CCcceEEECCCCCEEEEEecCCCEEEEEeC
Confidence 456789999999999888874 568999999999888877654 346789999999966554 55799999999
Q ss_pred ccCeeeEEeccCCCc---------eeEEEecCCCCEEEEEE--CCCeEEEEeCCCCCCCccCCcceeeecc-CCCceEEE
Q psy3053 652 ECGRIVTELAGHEDA---------ISCVAWDEKRKRLISGS--WDCTVRVWNTGASWSHMKPSKSLVSQLD-LDNRIKCL 719 (917)
Q Consensus 652 ~tg~~i~~l~~H~~~---------Vt~l~~spd~~~L~Sgs--~DgtI~vWdl~~~~~~~~~~~~~~~~~~-h~~~V~~l 719 (917)
.+++.+..+..+... +.+++|+|+++.+++++ .++.|.+||..++ ....... +...+.++
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~--------~~~~~~~~~~~~~~~~ 190 (353)
T 3vgz_A 119 KTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNI--------KLKTAIQNTGKMSTGL 190 (353)
T ss_dssp TTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTT--------EEEEEECCCCTTCCCC
T ss_pred CCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCC--------ceEEEecCCCCccceE
Confidence 999988887765432 78999999999888776 4789999999765 2222223 55568899
Q ss_pred EEeCCCCEEEEEECCCeEEEEECCCCeeeEEecC---CCCCCeEEEEEecCCCEEEEEeCC-CeEEEEECCCCeEEEEee
Q psy3053 720 AISKDNNQLAVGTEAGELIIWSLENHLMTQQLSD---DINASVNGVLFSEDGCRVLSCGNN-CMLNVYDLTTGMQVCNKV 795 (917)
Q Consensus 720 ~~spdg~~Lasgs~dG~I~iwDl~~~~~~~~l~~---~h~~~V~~v~fspdg~~L~s~s~D-g~I~iwDl~tg~~i~~~~ 795 (917)
+|+|+|+.+++++.++.|.+||+.+++....+.. ++...+.+++|+|+|+.+++++.+ +.|.+||..+++.+....
T Consensus 191 ~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~ 270 (353)
T 3vgz_A 191 ALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVA 270 (353)
T ss_dssp EEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEE
T ss_pred EECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEE
Confidence 9999999999999999999999999988877663 245567889999999977776654 788888887765443221
Q ss_pred cCCceEEEEEeCCCEEEEEeCCCeEEEEECCCCEEEEEEecCCCceEEEeecCCEEEEEe-CCCeEEEEECcCCeEEEEe
Q psy3053 796 FEEKLLCLSWAGEEKVILGGALGMVYLVDLIQVQLLKQVRAHKDAVLSLHFDNCTMLVGC-WDSCVVIYDVECGRIVTEL 874 (917)
Q Consensus 796 ~~~~i~~l~~s~~~~lv~gs~dG~I~vwdl~~~~~i~~l~~h~~~V~sis~dg~~Lasgs-~DG~I~Iwdl~tg~~l~~l 874 (917)
.....-.+++++++.+++++ .++.|.+||..+++.+..+
T Consensus 271 ----------------------------------------~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~ 310 (353)
T 3vgz_A 271 ----------------------------------------APESLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTF 310 (353)
T ss_dssp ----------------------------------------CSSCCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred ----------------------------------------cCCCceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEE
Confidence 11122245577888665555 6899999999999998888
Q ss_pred cCCCCCEEEEEEcCCCCEEEEEeCC
Q psy3053 875 AGHEDAISCVAWDEKRKRLISGNLV 899 (917)
Q Consensus 875 ~~h~~~V~slafSpdg~~LaSgs~D 899 (917)
..+ ..+.+++|+|+|++|+++..+
T Consensus 311 ~~~-~~~~~~~~s~dg~~l~v~~~~ 334 (353)
T 3vgz_A 311 DTP-THPNSLALSADGKTLYVSVKQ 334 (353)
T ss_dssp ECC-SEEEEEEECTTSCEEEEEEEC
T ss_pred ecC-CCCCeEEEcCCCCEEEEEEcc
Confidence 754 467999999999988776655
No 139
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.88 E-value=3.2e-20 Score=204.08 Aligned_cols=277 Identities=10% Similarity=0.074 Sum_probs=202.4
Q ss_pred EEeCCCC-EEEEEecccEEEEEEeccCeeeEEeccCCCceeEEEecCCCCEEEEEEC-CCeEEEEeCCCCCCCccCCcce
Q psy3053 629 CILPDNC-TMLVGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGSW-DCTVRVWNTGASWSHMKPSKSL 706 (917)
Q Consensus 629 ~~spd~~-~Lasgs~Dg~I~Iwdl~tg~~i~~l~~H~~~Vt~l~~spd~~~L~Sgs~-DgtI~vWdl~~~~~~~~~~~~~ 706 (917)
.|.+++. .+++++.++.|.+||..+++....+..+...+ +++|+|+++++++++. ++.|.+||..++.. ..
T Consensus 4 ~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~------~~ 76 (331)
T 3u4y_A 4 MFQTTSNFGIVVEQHLRRISFFSTDTLEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPP------KV 76 (331)
T ss_dssp ---CCCCEEEEEEGGGTEEEEEETTTCCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSC------EE
T ss_pred eEcCCCCEEEEEecCCCeEEEEeCcccceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCce------eE
Confidence 3555544 46777889999999999999988887777777 9999999997777666 89999999987621 02
Q ss_pred eeeccCCCceEEEEEeCCCCEEEEEECCC---eEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEE-eCCCe-EE
Q psy3053 707 VSQLDLDNRIKCLAISKDNNQLAVGTEAG---ELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSC-GNNCM-LN 781 (917)
Q Consensus 707 ~~~~~h~~~V~~l~~spdg~~Lasgs~dG---~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~-s~Dg~-I~ 781 (917)
.....+..+..+++|+|+|++++++..++ .|.+||+.+++.+..+. ......+++|+|+|++++++ ..++. +.
T Consensus 77 ~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~--~~~~~~~~~~spdg~~l~~~~~~~~~~i~ 154 (331)
T 3u4y_A 77 VAIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIP--IPYDAVGIAISPNGNGLILIDRSSANTVR 154 (331)
T ss_dssp EEEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEE--CCTTEEEEEECTTSSCEEEEEETTTTEEE
T ss_pred EecccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEE--CCCCccceEECCCCCEEEEEecCCCceEE
Confidence 22333444444499999999999655553 89999999999888776 34567999999999866555 55578 99
Q ss_pred EEECCCCeEE-----EEeecCCceEEEEEeCCCE-EEE-EeCCCeEEEEECCCCEE---EEEEecCCCc-eEEEeecCCE
Q psy3053 782 VYDLTTGMQV-----CNKVFEEKLLCLSWAGEEK-VIL-GGALGMVYLVDLIQVQL---LKQVRAHKDA-VLSLHFDNCT 850 (917)
Q Consensus 782 iwDl~tg~~i-----~~~~~~~~i~~l~~s~~~~-lv~-gs~dG~I~vwdl~~~~~---i~~l~~h~~~-V~sis~dg~~ 850 (917)
+|++.....+ ..........++++++++. +++ +..++.|.+||+.+++. +..+..+... -.+++|+|++
T Consensus 155 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~ 234 (331)
T 3u4y_A 155 RFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGTNNLPGTIVVSRDGST 234 (331)
T ss_dssp EEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEECSSCCCCEEECTTSSE
T ss_pred EEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccCCCCCceEEECCCCCE
Confidence 9998754322 2223445688999999875 444 44689999999998887 7777654322 2345889997
Q ss_pred EEEEe-CCCeEEEEECcCCeE--EEEecCC----CC---CEEEEEEcCCCCEEEEEe-CCCcEEEEecCcceEEE
Q psy3053 851 MLVGC-WDSCVVIYDVECGRI--VTELAGH----ED---AISCVAWDEKRKRLISGN-LVGAPKLYATEFYLLYV 914 (917)
Q Consensus 851 Lasgs-~DG~I~Iwdl~tg~~--l~~l~~h----~~---~V~slafSpdg~~LaSgs-~DG~V~IWdl~~~ll~~ 914 (917)
+++++ .++.|.+||..+++. +..+..+ .. ...+++|+|||++|++++ .++.|.+|+++...+..
T Consensus 235 l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~ 309 (331)
T 3u4y_A 235 VYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFTISGKVVGY 309 (331)
T ss_dssp EEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTSCEEEE
T ss_pred EEEEEcCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEEecCCcccc
Confidence 76665 578899999999887 4444322 22 235689999999887655 56799999998776543
No 140
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.88 E-value=5.6e-20 Score=202.06 Aligned_cols=289 Identities=12% Similarity=0.151 Sum_probs=201.1
Q ss_pred EEEEecCCceEEEecc-CCce-eeeeeccccceEEEEEeCCCCEEEEEecc-cEEEEEEec--cCee--eEEeccCCCce
Q psy3053 595 VASVGRDAMLKIHSLK-TGRQ-ERSAVLSSMTLSSLCILPDNCTMLVGCWD-SCVVIYDVE--CGRI--VTELAGHEDAI 667 (917)
Q Consensus 595 Lasgs~Dg~I~IWd~~-t~~~-~~~~~~~~~~V~sl~~spd~~~Lasgs~D-g~I~Iwdl~--tg~~--i~~l~~H~~~V 667 (917)
+++++.|+.|.+|++. ++.. ......+...+.+++|+|+++.+++++.+ +.|.+|+++ +++. +..+..+. .+
T Consensus 8 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~ 86 (343)
T 1ri6_A 8 YIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG-SL 86 (343)
T ss_dssp EEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS-CC
T ss_pred EEeCCCCCeEEEEEECCCCcEEEeeeEecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCC-CC
Confidence 4444779999999995 3322 12223356678899999999999988886 999999998 5553 34454444 78
Q ss_pred eEEEecCCCCEEEEEEC-CCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEEEE-CCCeEEEEECCC-
Q psy3053 668 SCVAWDEKRKRLISGSW-DCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGT-EAGELIIWSLEN- 744 (917)
Q Consensus 668 t~l~~spd~~~L~Sgs~-DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs-~dG~I~iwDl~~- 744 (917)
.+++|+|++++|++++. ++.|.+||+..+. .............+.+++|+|+++.+++++ .++.|.+||+.+
T Consensus 87 ~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~-----~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~ 161 (343)
T 1ri6_A 87 THISTDHQGQFVFVGSYNAGNVSVTRLEDGL-----PVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDD 161 (343)
T ss_dssp SEEEECTTSSEEEEEETTTTEEEEEEEETTE-----EEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTT
T ss_pred cEEEEcCCCCEEEEEecCCCeEEEEECCCCc-----cccccccccCCCCceEEEECCCCCEEEEecCCCCEEEEEEecCC
Confidence 99999999998877765 8899999985220 112222334455689999999999888887 899999999987
Q ss_pred CeeeE----EecCCCCCCeEEEEEecCCCEEEEEe-CCCeEEEEECCC--CeE--EEEee-c------CCceEEEEEeCC
Q psy3053 745 HLMTQ----QLSDDINASVNGVLFSEDGCRVLSCG-NNCMLNVYDLTT--GMQ--VCNKV-F------EEKLLCLSWAGE 808 (917)
Q Consensus 745 ~~~~~----~l~~~h~~~V~~v~fspdg~~L~s~s-~Dg~I~iwDl~t--g~~--i~~~~-~------~~~i~~l~~s~~ 808 (917)
++... .........+.+++|+|+|+.+++++ .++.+.+|++.. +.. ..... . ...+.+++|+++
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~d 241 (343)
T 1ri6_A 162 GHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPD 241 (343)
T ss_dssp SCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTT
T ss_pred CceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCC
Confidence 64432 22323456788999999999776655 789999999953 432 22221 1 124668999988
Q ss_pred C-EEE-EEeCCCeEEEEECC----CCEEEEEEecCCCceEE--EeecCCEEEEEe-CCCeEEEEEC--cCCeE--EEEec
Q psy3053 809 E-KVI-LGGALGMVYLVDLI----QVQLLKQVRAHKDAVLS--LHFDNCTMLVGC-WDSCVVIYDV--ECGRI--VTELA 875 (917)
Q Consensus 809 ~-~lv-~gs~dG~I~vwdl~----~~~~i~~l~~h~~~V~s--is~dg~~Lasgs-~DG~I~Iwdl--~tg~~--l~~l~ 875 (917)
+ .++ ++..++.|.+||+. ..+.+..+..+.. +.+ ++++|++|++++ .++.|.+|++ .+++. +..+.
T Consensus 242 g~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~ 320 (343)
T 1ri6_A 242 GRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQ-PRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLLHEKGRYA 320 (343)
T ss_dssp SSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSS-CCCEEECTTSSEEEEECTTTCEEEEEEEETTTTEEEEEEEEE
T ss_pred CCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCCc-cceEEECCCCCEEEEecCCCCeEEEEEEcCCCceeeEccccc
Confidence 7 454 44478999999998 3455555655444 444 477899888887 6899999954 46643 44444
Q ss_pred CCCCCEEEEEEcCCCC
Q psy3053 876 GHEDAISCVAWDEKRK 891 (917)
Q Consensus 876 ~h~~~V~slafSpdg~ 891 (917)
.. ....+++|.|+.+
T Consensus 321 ~g-~~p~~i~~~~~~~ 335 (343)
T 1ri6_A 321 VG-QGPMWVVVNAHEG 335 (343)
T ss_dssp CS-SSCCEEEEEEEC-
T ss_pred cC-CCCeeEEEEcccC
Confidence 32 3456777777543
No 141
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.88 E-value=9.5e-21 Score=232.66 Aligned_cols=277 Identities=14% Similarity=0.095 Sum_probs=214.2
Q ss_pred ccceEEEEEeCCCCEEEEEec-cc-----EEEEEEeccCeeeEEeccCCC------------------------ceeEEE
Q psy3053 622 SMTLSSLCILPDNCTMLVGCW-DS-----CVVIYDVECGRIVTELAGHED------------------------AISCVA 671 (917)
Q Consensus 622 ~~~V~sl~~spd~~~Lasgs~-Dg-----~I~Iwdl~tg~~i~~l~~H~~------------------------~Vt~l~ 671 (917)
...+.+++|+|||+.|++++. |+ .|++||+.+++....+..+.. .|.+++
T Consensus 36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 115 (741)
T 2ecf_A 36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQ 115 (741)
T ss_dssp CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCE
T ss_pred CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeE
Confidence 456899999999999999998 88 999999999988777765543 388999
Q ss_pred ecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEEEECCCeEEEEECCCCeeeEEe
Q psy3053 672 WDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGELIIWSLENHLMTQQL 751 (917)
Q Consensus 672 ~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~dG~I~iwDl~~~~~~~~l 751 (917)
|+|||++|++++. +.|.+||+.++.. ........+...+.+++|+|||+.|++++ ++.|++||+.+++.....
T Consensus 116 ~SpDg~~l~~~~~-~~i~~~d~~~~~~-----~~~~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~~~~~~ 188 (741)
T 2ecf_A 116 WSPDAQRLLFPLG-GELYLYDLKQEGK-----AAVRQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASGRQMQLT 188 (741)
T ss_dssp ECTTSSEEEEEET-TEEEEEESSSCST-----TSCCBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTTEEEECC
T ss_pred ECCCCCEEEEEeC-CcEEEEECCCCCc-----ceEEEcccCCcccccccCCCCCCEEEEEe-CCcEEEEecCCCCEEEec
Confidence 9999999999986 9999999976510 01223445667899999999999999987 468999999998766544
Q ss_pred cCCCCCC----------------eEEEEEecCCCEEEEEeCCC---------------------------------eEEE
Q psy3053 752 SDDINAS----------------VNGVLFSEDGCRVLSCGNNC---------------------------------MLNV 782 (917)
Q Consensus 752 ~~~h~~~----------------V~~v~fspdg~~L~s~s~Dg---------------------------------~I~i 782 (917)
. .+... +.+++|||||+.|++++.|+ .|.+
T Consensus 189 ~-~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~ 267 (741)
T 2ecf_A 189 A-DGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGV 267 (741)
T ss_dssp C-CCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEE
T ss_pred c-CCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEE
Confidence 4 23222 47899999999999988765 7899
Q ss_pred EECCC-CeEEEEe---ecCCceEEEEEeCCCE-EEEEe-----CCCeEEEEECCCCEEEEEEecCCC----c--eEEEee
Q psy3053 783 YDLTT-GMQVCNK---VFEEKLLCLSWAGEEK-VILGG-----ALGMVYLVDLIQVQLLKQVRAHKD----A--VLSLHF 846 (917)
Q Consensus 783 wDl~t-g~~i~~~---~~~~~i~~l~~s~~~~-lv~gs-----~dG~I~vwdl~~~~~i~~l~~h~~----~--V~sis~ 846 (917)
||+.+ ++..... .+...+.+++| +++. +++++ .++.|++||+.+++....+..+.. . -.++++
T Consensus 268 ~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~sp 346 (741)
T 2ecf_A 268 ISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFLD 346 (741)
T ss_dssp ECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEECT
T ss_pred EECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEECC
Confidence 99988 7654433 24456888999 8765 44443 257899999999987777665543 1 234578
Q ss_pred cCCEEEEEeCCCeEEEEECc-CCeEEEEecCCCCCEEEE-EEcCCCCEEEE-EeCCC--cEEEEecC
Q psy3053 847 DNCTMLVGCWDSCVVIYDVE-CGRIVTELAGHEDAISCV-AWDEKRKRLIS-GNLVG--APKLYATE 908 (917)
Q Consensus 847 dg~~Lasgs~DG~I~Iwdl~-tg~~l~~l~~h~~~V~sl-afSpdg~~LaS-gs~DG--~V~IWdl~ 908 (917)
||+++++++.||.+++|.+. ++. ...+..|...|.++ +|+|+|+.|+. ++.++ .+++|+++
T Consensus 347 dg~~~~~~~~~g~~~l~~~~~~~~-~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~ 412 (741)
T 2ecf_A 347 DGSILWSSERTGFQHLYRIDSKGK-AAALTHGNWSVDELLAVDEKAGLAYFRAGIESARESQIYAVP 412 (741)
T ss_dssp TSCEEEEECTTSSCEEEEECSSSC-EEESCCSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEE
T ss_pred CCeEEEEecCCCccEEEEEcCCCC-eeeeeecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEE
Confidence 99999999999988888765 455 77888888889887 59999998765 45555 89999985
No 142
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.87 E-value=8e-20 Score=200.85 Aligned_cols=265 Identities=10% Similarity=0.078 Sum_probs=188.9
Q ss_pred EEEEEecccEEEEEEec-cCe--eeEEeccCCCceeEEEecCCCCEEEEEECC-CeEEEEeCCCCCCCccCCcceeeecc
Q psy3053 636 TMLVGCWDSCVVIYDVE-CGR--IVTELAGHEDAISCVAWDEKRKRLISGSWD-CTVRVWNTGASWSHMKPSKSLVSQLD 711 (917)
Q Consensus 636 ~Lasgs~Dg~I~Iwdl~-tg~--~i~~l~~H~~~Vt~l~~spd~~~L~Sgs~D-gtI~vWdl~~~~~~~~~~~~~~~~~~ 711 (917)
.+++++.|+.|++|+++ +++ .+.. ..|...+.+++|+|++++|++++.+ +.|.+|++...... ........
T Consensus 7 l~~~~~~~~~v~~~~~~~~~~~~~~~~-~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~----~~~~~~~~ 81 (343)
T 1ri6_A 7 VYIASPESQQIHVWNLNHEGALTLTQV-VDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGA----LTFAAESA 81 (343)
T ss_dssp EEEEEGGGTEEEEEEECTTSCEEEEEE-EECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCC----EEEEEEEE
T ss_pred EEEeCCCCCeEEEEEECCCCcEEEeee-EecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCc----eeeccccc
Confidence 34445779999999996 342 2333 3477889999999999999999887 99999998722101 11112222
Q ss_pred CCCceEEEEEeCCCCEEEEEEC-CCeEEEEECC---CCeeeEEecCCCCCCeEEEEEecCCCEEEEEe-CCCeEEEEECC
Q psy3053 712 LDNRIKCLAISKDNNQLAVGTE-AGELIIWSLE---NHLMTQQLSDDINASVNGVLFSEDGCRVLSCG-NNCMLNVYDLT 786 (917)
Q Consensus 712 h~~~V~~l~~spdg~~Lasgs~-dG~I~iwDl~---~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s-~Dg~I~iwDl~ 786 (917)
....+.+++|+|+++.+++++. ++.|.+||+. ..+....+. ....+.+++|+|+|+.+++++ .++.|.+||+.
T Consensus 82 ~~~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~--~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~ 159 (343)
T 1ri6_A 82 LPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVE--GLDGCHSANISPDNRTLWVPALKQDRICLFTVS 159 (343)
T ss_dssp CSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEEC--CCTTBCCCEECTTSSEEEEEEGGGTEEEEEEEC
T ss_pred cCCCCcEEEEcCCCCEEEEEecCCCeEEEEECCCCcccccccccc--CCCCceEEEECCCCCEEEEecCCCCEEEEEEec
Confidence 2347899999999998877665 8899999994 334444443 345688999999999888887 89999999998
Q ss_pred C-CeEEE----E--eecCCceEEEEEeCCCE-EEEE-eCCCeEEEEECCC--CEE--EEEEec----C--CCce--EEEe
Q psy3053 787 T-GMQVC----N--KVFEEKLLCLSWAGEEK-VILG-GALGMVYLVDLIQ--VQL--LKQVRA----H--KDAV--LSLH 845 (917)
Q Consensus 787 t-g~~i~----~--~~~~~~i~~l~~s~~~~-lv~g-s~dG~I~vwdl~~--~~~--i~~l~~----h--~~~V--~sis 845 (917)
+ ++... . ......+.+++|++++. ++++ ..++.|.+|++.. ++. ...... + ...+ .+++
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s 239 (343)
T 1ri6_A 160 DDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHIT 239 (343)
T ss_dssp TTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEEC
T ss_pred CCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEEC
Confidence 7 65432 1 12345688899998875 5444 4789999999953 432 333321 1 1233 3447
Q ss_pred ecCCEEEEE-eCCCeEEEEECc--C--CeEEEEecCCCCCEEEEEEcCCCCEEEEEe-CCCcEEEEecC
Q psy3053 846 FDNCTMLVG-CWDSCVVIYDVE--C--GRIVTELAGHEDAISCVAWDEKRKRLISGN-LVGAPKLYATE 908 (917)
Q Consensus 846 ~dg~~Lasg-s~DG~I~Iwdl~--t--g~~l~~l~~h~~~V~slafSpdg~~LaSgs-~DG~V~IWdl~ 908 (917)
+++++++++ ..++.|.+|++. + .+.+..+..+.. +.+++|+|+|++|++++ .++.|.+|+++
T Consensus 240 ~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~v~v~~~d 307 (343)
T 1ri6_A 240 PDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQ-PRGFNVDHSGKYLIAAGQKSHHISVYEIV 307 (343)
T ss_dssp TTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSS-CCCEEECTTSSEEEEECTTTCEEEEEEEE
T ss_pred CCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCCc-cceEEECCCCCEEEEecCCCCeEEEEEEc
Confidence 789887754 478999999998 3 345555655544 88999999999998887 68999999665
No 143
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.87 E-value=3.3e-20 Score=203.37 Aligned_cols=268 Identities=13% Similarity=0.052 Sum_probs=201.2
Q ss_pred CEEEEEecccEEEEEEeccCeeeEEeccCCC--ceeEEEecCCCCEEE-EEECCCeEEEEeCCCCCCCccCCcceeee-c
Q psy3053 635 CTMLVGCWDSCVVIYDVECGRIVTELAGHED--AISCVAWDEKRKRLI-SGSWDCTVRVWNTGASWSHMKPSKSLVSQ-L 710 (917)
Q Consensus 635 ~~Lasgs~Dg~I~Iwdl~tg~~i~~l~~H~~--~Vt~l~~spd~~~L~-Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~-~ 710 (917)
.++++++.++.|.+||+.+++.+..+..... .+.+++|+|+++.++ +++.++.|.+||+.++. ..... .
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~-------~~~~~~~ 74 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGE-------TLGRIDL 74 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCC-------EEEEEEC
T ss_pred cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCC-------eEeeEEc
Confidence 4788999999999999999998887763322 588999999998765 55567899999997762 11111 1
Q ss_pred cC----CCceEEEEEeCCCCEEEEEE------------CCCeEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEE
Q psy3053 711 DL----DNRIKCLAISKDNNQLAVGT------------EAGELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSC 774 (917)
Q Consensus 711 ~h----~~~V~~l~~spdg~~Lasgs------------~dG~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~ 774 (917)
++ ...+.+++|+|+|+.+++++ .++.|.+||+.+++....+. ....+.+++|+|+|+.++++
T Consensus 75 ~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~--~~~~~~~~~~s~dg~~l~~~ 152 (337)
T 1pby_B 75 STPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFE--APRQITMLAWARDGSKLYGL 152 (337)
T ss_dssp CBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEE--CCSSCCCEEECTTSSCEEEE
T ss_pred CCcccccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEe--CCCCcceeEECCCCCEEEEe
Confidence 11 12577899999999998886 57999999999998887776 24567889999999988888
Q ss_pred eCCCeEEEEECCCCeEEEEeecCCceEEEEEeCCCE-EEEEe-CCC-----------------------eEEEEECCCCE
Q psy3053 775 GNNCMLNVYDLTTGMQVCNKVFEEKLLCLSWAGEEK-VILGG-ALG-----------------------MVYLVDLIQVQ 829 (917)
Q Consensus 775 s~Dg~I~iwDl~tg~~i~~~~~~~~i~~l~~s~~~~-lv~gs-~dG-----------------------~I~vwdl~~~~ 829 (917)
++.|.+||+.+++.............+.+++++. +++++ .++ .|.+||+.+++
T Consensus 153 --~~~i~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~ 230 (337)
T 1pby_B 153 --GRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGE 230 (337)
T ss_dssp --SSSEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCC
T ss_pred --CCeEEEEECCCCcEeeeeeccccCCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCC
Confidence 6889999999998876655433111224555543 22222 122 57899999987
Q ss_pred EE-EEEecCCCceEEE--eecCCEEEEEeCCCeEEEEECcCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEe
Q psy3053 830 LL-KQVRAHKDAVLSL--HFDNCTMLVGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGNLVGAPKLYA 906 (917)
Q Consensus 830 ~i-~~l~~h~~~V~si--s~dg~~Lasgs~DG~I~Iwdl~tg~~l~~l~~h~~~V~slafSpdg~~LaSgs~DG~V~IWd 906 (917)
.. ..+..+...+.++ ++++++++++ ++.|.+||+.+++.+..+..+ ..+.+++|+|+|++|++++.++.|.+||
T Consensus 231 ~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~i~v~d 307 (337)
T 1pby_B 231 MAMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPLP-HSYYSVNVSTDGSTVWLGGALGDLAAYD 307 (337)
T ss_dssp EEEEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEECS-SCCCEEEECTTSCEEEEESBSSEEEEEE
T ss_pred ceEeecCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceecCC-CceeeEEECCCCCEEEEEcCCCcEEEEE
Confidence 64 2334455566555 7799998888 799999999999988887643 4678999999999999999999999999
Q ss_pred cCc-ceEEEEe
Q psy3053 907 TEF-YLLYVLT 916 (917)
Q Consensus 907 l~~-~ll~~Lt 916 (917)
+++ ..+..+.
T Consensus 308 ~~~~~~~~~~~ 318 (337)
T 1pby_B 308 AETLEKKGQVD 318 (337)
T ss_dssp TTTCCEEEEEE
T ss_pred CcCCcEEEEEE
Confidence 975 4555543
No 144
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.86 E-value=8.7e-20 Score=200.00 Aligned_cols=272 Identities=14% Similarity=0.091 Sum_probs=208.2
Q ss_pred cEEEEEecCCceEEEeccCCceeeeeecccc--ceEEEEEeCCCCEEE-EEecccEEEEEEeccCeeeEEecc-C----C
Q psy3053 593 ISVASVGRDAMLKIHSLKTGRQERSAVLSSM--TLSSLCILPDNCTML-VGCWDSCVVIYDVECGRIVTELAG-H----E 664 (917)
Q Consensus 593 ~~Lasgs~Dg~I~IWd~~t~~~~~~~~~~~~--~V~sl~~spd~~~La-sgs~Dg~I~Iwdl~tg~~i~~l~~-H----~ 664 (917)
+++++++.++.|.+||..+++.+..+..... .+.+++|+|+++.++ +++.++.|.+||+.+++.+..+.. + .
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~ 81 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERV 81 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEE
T ss_pred cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCccccc
Confidence 4789999999999999999988877764432 478899999998664 555688999999999988776653 2 2
Q ss_pred CceeEEEecCCCCEEEEEE------------CCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEEEE
Q psy3053 665 DAISCVAWDEKRKRLISGS------------WDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGT 732 (917)
Q Consensus 665 ~~Vt~l~~spd~~~L~Sgs------------~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs 732 (917)
..+.+++|+|+++++++++ .++.|.+||+.++ ...........+.+++|+|+|+.++++
T Consensus 82 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~--------~~~~~~~~~~~~~~~~~s~dg~~l~~~- 152 (337)
T 1pby_B 82 KSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETL--------SRRKAFEAPRQITMLAWARDGSKLYGL- 152 (337)
T ss_dssp ECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTT--------EEEEEEECCSSCCCEEECTTSSCEEEE-
T ss_pred ccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCC--------cEEEEEeCCCCcceeEECCCCCEEEEe-
Confidence 2678899999999999886 5799999999765 222223335567889999999988887
Q ss_pred CCCeEEEEECCCCeeeEEecCCC-CCCeEEEEEecCCCEEEEEeCCC------------------------eEEEEECCC
Q psy3053 733 EAGELIIWSLENHLMTQQLSDDI-NASVNGVLFSEDGCRVLSCGNNC------------------------MLNVYDLTT 787 (917)
Q Consensus 733 ~dG~I~iwDl~~~~~~~~l~~~h-~~~V~~v~fspdg~~L~s~s~Dg------------------------~I~iwDl~t 787 (917)
++.|.+||+.+++....+.... .. .+.|+|+|+.++.++.++ .|.+||+.+
T Consensus 153 -~~~i~~~d~~~~~~~~~~~~~~~~~---~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~ 228 (337)
T 1pby_B 153 -GRDLHVMDPEAGTLVEDKPIQSWEA---ETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLET 228 (337)
T ss_dssp -SSSEEEEETTTTEEEEEECSTTTTT---TTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTT
T ss_pred -CCeEEEEECCCCcEeeeeeccccCC---CceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCC
Confidence 6899999999998887776332 12 237899988776554332 478999999
Q ss_pred CeEEE--EeecCCceEEEEEeCCCEEEEEeCCCeEEEEECCCCEEEEEEecCCC-ceEEEeecCCEEEEEeCCCeEEEEE
Q psy3053 788 GMQVC--NKVFEEKLLCLSWAGEEKVILGGALGMVYLVDLIQVQLLKQVRAHKD-AVLSLHFDNCTMLVGCWDSCVVIYD 864 (917)
Q Consensus 788 g~~i~--~~~~~~~i~~l~~s~~~~lv~gs~dG~I~vwdl~~~~~i~~l~~h~~-~V~sis~dg~~Lasgs~DG~I~Iwd 864 (917)
++... .......+.++++++++..+..+ ++.|.+||+.+++.+..+..+.. .-.+++++|+++++++.++.|.+||
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~-~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~v~d 307 (337)
T 1pby_B 229 GEMAMREVRIMDVFYFSTAVNPAKTRAFGA-YNVLESFDLEKNASIKRVPLPHSYYSVNVSTDGSTVWLGGALGDLAAYD 307 (337)
T ss_dssp CCEEEEEEEECSSCEEEEEECTTSSEEEEE-ESEEEEEETTTTEEEEEEECSSCCCEEEECTTSCEEEEESBSSEEEEEE
T ss_pred CCceEeecCCCCCceeeEEECCCCCEEEEe-CCeEEEEECCCCcCcceecCCCceeeEEECCCCCEEEEEcCCCcEEEEE
Confidence 87651 12234567889999987655444 79999999999998888764332 2233477899999999999999999
Q ss_pred CcCCeEEEEecCCC
Q psy3053 865 VECGRIVTELAGHE 878 (917)
Q Consensus 865 l~tg~~l~~l~~h~ 878 (917)
+.+++.+..+..+.
T Consensus 308 ~~~~~~~~~~~~~~ 321 (337)
T 1pby_B 308 AETLEKKGQVDLPG 321 (337)
T ss_dssp TTTCCEEEEEECGG
T ss_pred CcCCcEEEEEEcCC
Confidence 99999988886553
No 145
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.86 E-value=3.4e-20 Score=198.32 Aligned_cols=250 Identities=10% Similarity=0.131 Sum_probs=190.7
Q ss_pred EEecccEEEEEEeccCeeeEEeccCCCceeEEEecCCCCEEEEEECCCeEEEEeCCC-CCCCccCCcceeeeccC-CCce
Q psy3053 639 VGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGA-SWSHMKPSKSLVSQLDL-DNRI 716 (917)
Q Consensus 639 sgs~Dg~I~Iwdl~tg~~i~~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~-~~~~~~~~~~~~~~~~h-~~~V 716 (917)
.++.|+.|++||+.+++.. .+..|...|.+++|+|++++|++++ ++.|.+||+.+ +. .......+ ...+
T Consensus 17 ~~~~~~~i~~~d~~~~~~~-~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~-------~~~~~~~~~~~~~ 87 (297)
T 2ojh_A 17 GGSMRSSIEIFNIRTRKMR-VVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPS-------PEKVDTGFATICN 87 (297)
T ss_dssp -CCCCEEEEEEETTTTEEE-EEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCS-------CEECCCTTCCCBC
T ss_pred CCCcceeEEEEeCCCCcee-eeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCC-------ceEeccccccccc
Confidence 3467899999999988866 4556899999999999999999987 88999999987 52 11112222 4678
Q ss_pred EEEEEeCCCCEEEEEEC--C--CeEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEE-EEeCCCeEEEEEC--CCCe
Q psy3053 717 KCLAISKDNNQLAVGTE--A--GELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVL-SCGNNCMLNVYDL--TTGM 789 (917)
Q Consensus 717 ~~l~~spdg~~Lasgs~--d--G~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~-s~s~Dg~I~iwDl--~tg~ 789 (917)
.+++|+|+++.+++++. + ..|..+++.++. ...+. ....+..++|+|+|+.++ +++.++.+.+|++ .++.
T Consensus 88 ~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~--~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~ 164 (297)
T 2ojh_A 88 NDHGISPDGALYAISDKVEFGKSAIYLLPSTGGT-PRLMT--KNLPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGV 164 (297)
T ss_dssp SCCEECTTSSEEEEEECTTTSSCEEEEEETTCCC-CEECC--SSSSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCC
T ss_pred cceEECCCCCEEEEEEeCCCCcceEEEEECCCCc-eEEee--cCCCccceEECCCCCEEEEEECCCCceEEEEEECCCCc
Confidence 89999999999999983 3 445555656555 34443 233589999999999887 7778998899884 5565
Q ss_pred EEEEeecCCceEEEEEeCCCE-EEEEe-CCCeEEEEECC-CCEEEEEEecCCCceEEE--eecCCEEEEEeCC-------
Q psy3053 790 QVCNKVFEEKLLCLSWAGEEK-VILGG-ALGMVYLVDLI-QVQLLKQVRAHKDAVLSL--HFDNCTMLVGCWD------- 857 (917)
Q Consensus 790 ~i~~~~~~~~i~~l~~s~~~~-lv~gs-~dG~I~vwdl~-~~~~i~~l~~h~~~V~si--s~dg~~Lasgs~D------- 857 (917)
......+...+.+++|++++. +++++ .++.+.+|++. .+.....+..|...+.++ +++|++|++++.+
T Consensus 165 ~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~ 244 (297)
T 2ojh_A 165 ETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHP 244 (297)
T ss_dssp EEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCC
T ss_pred ceEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCccc
Confidence 555555667899999998875 44444 58899999886 555667777777777766 6799999888765
Q ss_pred ----CeEEEEECcCCeE--EEEecCCCCCEEEEEEcCCCCEEEEEeCCC
Q psy3053 858 ----SCVVIYDVECGRI--VTELAGHEDAISCVAWDEKRKRLISGNLVG 900 (917)
Q Consensus 858 ----G~I~Iwdl~tg~~--l~~l~~h~~~V~slafSpdg~~LaSgs~DG 900 (917)
+.|.+||+.+++. +..+.+|...+.+++|+|+|+.|++++.|.
T Consensus 245 ~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 245 RDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp SSEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred ccCceEEEEEecCCCCceeeeccCCCCcccccceECCCCCEEEEEEecc
Confidence 5699999988765 445557888999999999999999887654
No 146
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.85 E-value=1.6e-19 Score=220.54 Aligned_cols=293 Identities=12% Similarity=0.051 Sum_probs=206.0
Q ss_pred cceEEEEEeCCCcEEEEEecCCceEEEeccCCceeeeeeccccceEEEEEeCCCCEEEEEecccEEEEEEecc-----Ce
Q psy3053 581 EAITAVAICGEGISVASVGRDAMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTMLVGCWDSCVVIYDVEC-----GR 655 (917)
Q Consensus 581 ~~Vtsv~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~~~~~~~~V~sl~~spd~~~Lasgs~Dg~I~Iwdl~t-----g~ 655 (917)
..|.+++|||| +.++.+ .++.|.+||+.+++... +..+...+.+++|+|||+.|+++ .|+.|++|++.+ ++
T Consensus 82 ~~v~~~~~spd-~~~~~~-~~~~i~~~d~~~~~~~~-l~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~ 157 (706)
T 2z3z_A 82 FPSFRTLDAGR-GLVVLF-TQGGLVGFDMLARKVTY-LFDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSR 157 (706)
T ss_dssp CCCEEEEETTT-TEEEEE-ETTEEEEEETTTTEEEE-EECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCC
T ss_pred cCceeEEECCC-CeEEEE-ECCEEEEEECCCCceEE-ccCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCC
Confidence 57999999999 555554 46999999998876544 34456678899999999999985 689999999998 87
Q ss_pred eeEEeccCCCc--------------eeEEEecCCCCEEEEEE---------------------------------CCCeE
Q psy3053 656 IVTELAGHEDA--------------ISCVAWDEKRKRLISGS---------------------------------WDCTV 688 (917)
Q Consensus 656 ~i~~l~~H~~~--------------Vt~l~~spd~~~L~Sgs---------------------------------~DgtI 688 (917)
.......+... +.+++|+|||++|++++ .+..|
T Consensus 158 ~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l 237 (706)
T 2z3z_A 158 AIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTV 237 (706)
T ss_dssp CEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEE
T ss_pred cEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEE
Confidence 76655544443 48999999999999998 44789
Q ss_pred EEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEEEECCC-----eEEEEECCCCeeeEEec-CCCC---CCe
Q psy3053 689 RVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAG-----ELIIWSLENHLMTQQLS-DDIN---ASV 759 (917)
Q Consensus 689 ~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~dG-----~I~iwDl~~~~~~~~l~-~~h~---~~V 759 (917)
.+||+.++... .......+...+.+++|+|+|+.|++++.++ .|.+||+.+++....+. ..+. ..+
T Consensus 238 ~~~d~~~~~~~-----~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~ 312 (706)
T 2z3z_A 238 GIYHLATGKTV-----YLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPL 312 (706)
T ss_dssp EEEETTTTEEE-----ECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCC
T ss_pred EEEECCCCceE-----eeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECcc
Confidence 99999776210 1111124667799999999999999987775 89999999983333332 1122 234
Q ss_pred EEEEEec--CCCEEEEEeCCCeEEEEECC-CCeEEEEee-cCCceEE-EEEeCCCE-EEEE-eCCC----eEEEEECCCC
Q psy3053 760 NGVLFSE--DGCRVLSCGNNCMLNVYDLT-TGMQVCNKV-FEEKLLC-LSWAGEEK-VILG-GALG----MVYLVDLIQV 828 (917)
Q Consensus 760 ~~v~fsp--dg~~L~s~s~Dg~I~iwDl~-tg~~i~~~~-~~~~i~~-l~~s~~~~-lv~g-s~dG----~I~vwdl~~~ 828 (917)
.+++|+| ||+++++++.|+.+++|++. ++.....+. +...+.+ ++|++++. ++++ +.++ .|..||+.++
T Consensus 313 ~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~ 392 (706)
T 2z3z_A 313 HPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGG 392 (706)
T ss_dssp SCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCC
T ss_pred CCceeecCCCCEEEEEEccCCccEEEEEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCC
Confidence 6789999 99999999999999998875 555554443 3344665 79998763 4444 4444 7788888776
Q ss_pred EEEEEEecCCCceEEE--eecCCEEEEEeCC----CeEEEEECcCCeEEEEecCCCCCEEEEEE
Q psy3053 829 QLLKQVRAHKDAVLSL--HFDNCTMLVGCWD----SCVVIYDVECGRIVTELAGHEDAISCVAW 886 (917)
Q Consensus 829 ~~i~~l~~h~~~V~si--s~dg~~Lasgs~D----G~I~Iwdl~tg~~l~~l~~h~~~V~slaf 886 (917)
+ ...+. +...+.++ ++||++++.++.+ +.|++||+.+++ ...+. +..++....+
T Consensus 393 ~-~~~l~-~~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~~~~~-~~~~~-~~~~~~~~~~ 452 (706)
T 2z3z_A 393 K-TKDLT-PESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNIGKGS-HTLLE-AKNPDTGYAM 452 (706)
T ss_dssp C-CEESC-CSSSEEEEEECTTSSEEEEEEECSSCSCEEEEEESSSCE-EEEEE-CC------CC
T ss_pred C-ceecc-CCCceEEEEECCCCCEEEEEecCCCCCcEEEEEECCCCe-Eeecc-ccchhhhcCC
Confidence 5 33333 55566665 7789988776544 569999999887 33332 3334444444
No 147
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.85 E-value=1.6e-20 Score=229.74 Aligned_cols=276 Identities=13% Similarity=0.058 Sum_probs=204.3
Q ss_pred eEEEEEeCCCCEEEEEecccEEEEEEeccCeeeEEeccCCC---ceeEEEecCCCCEEEEEECC---------CeEEEEe
Q psy3053 625 LSSLCILPDNCTMLVGCWDSCVVIYDVECGRIVTELAGHED---AISCVAWDEKRKRLISGSWD---------CTVRVWN 692 (917)
Q Consensus 625 V~sl~~spd~~~Lasgs~Dg~I~Iwdl~tg~~i~~l~~H~~---~Vt~l~~spd~~~L~Sgs~D---------gtI~vWd 692 (917)
..+++|+|||+++++ +.||+|++||+.+++....+.+|.. .|.+++|+|||++|++++.+ +.+.+||
T Consensus 19 ~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d 97 (723)
T 1xfd_A 19 DPEAKWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSK 97 (723)
T ss_dssp CCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEE
T ss_pred ccccEEcCCCcEEEE-eCCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEEE
Confidence 567889999997766 7899999999999998888887765 49999999999999999875 7888999
Q ss_pred CCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEEEECCCeEEEEECCCCeeeEEecCCCCC---------------
Q psy3053 693 TGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGELIIWSLENHLMTQQLSDDINA--------------- 757 (917)
Q Consensus 693 l~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~dG~I~iwDl~~~~~~~~l~~~h~~--------------- 757 (917)
+.++.. ..+.....+...+.+++|||||+.|++++. +.|++||+.+++...... .+..
T Consensus 98 ~~~~~~-----~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~-~~~~~~~~~g~~~~v~~ee 170 (723)
T 1xfd_A 98 IPHGDP-----QSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVS-TGKEGVIYNGLSDWLYEEE 170 (723)
T ss_dssp SSSCCC-----EECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEEC-CCBTTTEEEEECCHHHHHT
T ss_pred CCCCce-----EeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEec-CCCCCceECcccceeEEEE
Confidence 987621 111112234455889999999999999886 799999999987766554 2222
Q ss_pred ---CeEEEEEecCCCEEEEEeCCC----------------------------------eEEEEECCCCeEEEEeec----
Q psy3053 758 ---SVNGVLFSEDGCRVLSCGNNC----------------------------------MLNVYDLTTGMQVCNKVF---- 796 (917)
Q Consensus 758 ---~V~~v~fspdg~~L~s~s~Dg----------------------------------~I~iwDl~tg~~i~~~~~---- 796 (917)
.+.+++|||||+.|++++.|+ .|++||+.+++....+..
T Consensus 171 ~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~ 250 (723)
T 1xfd_A 171 ILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDP 250 (723)
T ss_dssp TSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCG
T ss_pred eccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccC
Confidence 237899999999999887543 799999988875333332
Q ss_pred ---CCceEEEEEeCCCEEEE-EeC----CCeEEEEECCCCEEEEEEec-CCCc------eEEEeecCCEEEE--EeCCC-
Q psy3053 797 ---EEKLLCLSWAGEEKVIL-GGA----LGMVYLVDLIQVQLLKQVRA-HKDA------VLSLHFDNCTMLV--GCWDS- 858 (917)
Q Consensus 797 ---~~~i~~l~~s~~~~lv~-gs~----dG~I~vwdl~~~~~i~~l~~-h~~~------V~sis~dg~~Las--gs~DG- 858 (917)
...+.+++|+|++.+++ ... +..|++||+.+++....+.. +... -.+.+|||+.|+. +..+|
T Consensus 251 ~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~ 330 (723)
T 1xfd_A 251 RMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGG 330 (723)
T ss_dssp GGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSS
T ss_pred CCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCC
Confidence 34588999999997664 322 35799999999987666543 3332 2345889997665 45667
Q ss_pred -----eEEEEE-CcCCe--EEEEecCCCCCEEE-EEEcCCCCEEEEEeCC---CcEEEEecC
Q psy3053 859 -----CVVIYD-VECGR--IVTELAGHEDAISC-VAWDEKRKRLISGNLV---GAPKLYATE 908 (917)
Q Consensus 859 -----~I~Iwd-l~tg~--~l~~l~~h~~~V~s-lafSpdg~~LaSgs~D---G~V~IWdl~ 908 (917)
.|.+|| ..++. +...+..+...+.. ++|+|||+.|+..+.+ +.+++|+++
T Consensus 331 ~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~ 392 (723)
T 1xfd_A 331 RGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSAN 392 (723)
T ss_dssp SSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEEC
T ss_pred CcceeEEEEEeccCCCCccceeEeecCCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEe
Confidence 566777 34444 14455544445554 6999999999876655 789999986
No 148
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.84 E-value=6e-20 Score=224.92 Aligned_cols=320 Identities=11% Similarity=0.026 Sum_probs=221.0
Q ss_pred EEEEeCCCcEEEEEecCCceEEEeccCCceeeeeecccc---ceEEEEEeCCCCEEEEEec---------ccEEEEEEec
Q psy3053 585 AVAICGEGISVASVGRDAMLKIHSLKTGRQERSAVLSSM---TLSSLCILPDNCTMLVGCW---------DSCVVIYDVE 652 (917)
Q Consensus 585 sv~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~~~~~~~---~V~sl~~spd~~~Lasgs~---------Dg~I~Iwdl~ 652 (917)
+++|+|+|++++ ++.|+.|++||+.+++....+..+.. .+.+++|+|||++|++++. ++.|++||+.
T Consensus 20 ~~~~s~dg~~~~-~~~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~ 98 (719)
T 1z68_A 20 FPNWISGQEYLH-QSADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLS 98 (719)
T ss_dssp CCEESSSSEEEE-ECTTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETT
T ss_pred ccEECCCCeEEE-EcCCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECC
Confidence 679999996555 45699999999999988776665544 4899999999999999876 7899999999
Q ss_pred cCeee--EEeccCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccC--CcceeeeccCCC---------ceEEE
Q psy3053 653 CGRIV--TELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKP--SKSLVSQLDLDN---------RIKCL 719 (917)
Q Consensus 653 tg~~i--~~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~--~~~~~~~~~h~~---------~V~~l 719 (917)
+++.+ ..+ ...+.+++|+|||+.|++++ |+.|++|++.++...... ........++.. ...++
T Consensus 99 ~g~~~~~~~l---~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~ 174 (719)
T 1z68_A 99 NGEFVRGNEL---PRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYAL 174 (719)
T ss_dssp TTEECCSSCC---CSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCE
T ss_pred CCccccceec---CcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccE
Confidence 98863 222 35689999999999999986 789999999776311000 000000111211 12589
Q ss_pred EEeCCCCEEEEEECCC----------------------------------eEEEEECCCCeee--EEec-----CCCCCC
Q psy3053 720 AISKDNNQLAVGTEAG----------------------------------ELIIWSLENHLMT--QQLS-----DDINAS 758 (917)
Q Consensus 720 ~~spdg~~Lasgs~dG----------------------------------~I~iwDl~~~~~~--~~l~-----~~h~~~ 758 (917)
+|+|||+.|++++.|. .|.+||+.+++.. ..+. ..+...
T Consensus 175 ~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 254 (719)
T 1z68_A 175 WWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYY 254 (719)
T ss_dssp EECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEE
T ss_pred EECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcce
Confidence 9999999999987652 7889999987653 1221 146778
Q ss_pred eEEEEEecCCCEEEEEeCC----CeEEEEE----CCCCeEEEEe-----ecCCceE-----EEEEeCCCE--EE-EEeCC
Q psy3053 759 VNGVLFSEDGCRVLSCGNN----CMLNVYD----LTTGMQVCNK-----VFEEKLL-----CLSWAGEEK--VI-LGGAL 817 (917)
Q Consensus 759 V~~v~fspdg~~L~s~s~D----g~I~iwD----l~tg~~i~~~-----~~~~~i~-----~l~~s~~~~--lv-~gs~d 817 (917)
+.+++|+||++.+++.... ..|.+|| ..+++..... .+...+. ++.|++++. ++ ++..+
T Consensus 255 ~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~ 334 (719)
T 1z68_A 255 FSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKD 334 (719)
T ss_dssp EEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTT
T ss_pred EEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCCCCeEEEEEEccC
Confidence 9999999998776664432 2488899 7777654333 2333444 778998775 33 34445
Q ss_pred C--eEEEEECCCCEEEEEEecCCCceEEE-eecCCEEEEEeCC-----CeEEEEECcC--Ce-EEEEec----CCCCCEE
Q psy3053 818 G--MVYLVDLIQVQLLKQVRAHKDAVLSL-HFDNCTMLVGCWD-----SCVVIYDVEC--GR-IVTELA----GHEDAIS 882 (917)
Q Consensus 818 G--~I~vwdl~~~~~i~~l~~h~~~V~si-s~dg~~Lasgs~D-----G~I~Iwdl~t--g~-~l~~l~----~h~~~V~ 882 (917)
| .|.+||+.+++ ...+..+...+..+ .++++.|+..+.+ +.+++|.+.. +. ....+. +|...+.
T Consensus 335 g~~~l~~~~~~~~~-~~~lt~~~~~v~~~~~~d~~~i~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~l~~~~~~~~~~~~ 413 (719)
T 1z68_A 335 GYKHIHYIKDTVEN-AIQITSGKWEAINIFRVTQDSLFYSSNEFEEYPGRRNIYRISIGSYPPSKKCVTCHLRKERCQYY 413 (719)
T ss_dssp SCEEEEEESSCSTT-CEECSCSSSCEEEEEEECSSEEEEEESCGGGCTTCBEEEEEECSSSSCCEEESSTTTTTTTBCBE
T ss_pred CceEEEEEECCCCc-eEecccCceEEEEEEEEeCCEEEEEEecCCCCCceEEEEEEeCCCCCCCceeccCccCCCCCceE
Confidence 5 67778887766 44555555556554 2288877776654 7888998753 42 123333 2667788
Q ss_pred EEEEcCCCCEEEE-EeCC--CcEEEEecCcc
Q psy3053 883 CVAWDEKRKRLIS-GNLV--GAPKLYATEFY 910 (917)
Q Consensus 883 slafSpdg~~LaS-gs~D--G~V~IWdl~~~ 910 (917)
.+.|+|++++++. ++.+ ..+.+|++...
T Consensus 414 ~~~~s~dg~~l~~~~s~~~~p~~~l~d~~~g 444 (719)
T 1z68_A 414 TASFSDYAKYYALVCYGPGIPISTLHDGRTD 444 (719)
T ss_dssp EEEECGGGSSEEEEECCBSSCEEEEECSSSC
T ss_pred EEEECCCCCEEEEEcCCCCCCeEEEEECCCC
Confidence 9999999987774 3333 46889988643
No 149
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.83 E-value=3.5e-19 Score=190.44 Aligned_cols=250 Identities=10% Similarity=0.009 Sum_probs=186.2
Q ss_pred EecCCceEEEeccCCceeeeeeccccceEEEEEeCCCCEEEEEecccEEEEEEecc-CeeeEEeccC-CCceeEEEecCC
Q psy3053 598 VGRDAMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTMLVGCWDSCVVIYDVEC-GRIVTELAGH-EDAISCVAWDEK 675 (917)
Q Consensus 598 gs~Dg~I~IWd~~t~~~~~~~~~~~~~V~sl~~spd~~~Lasgs~Dg~I~Iwdl~t-g~~i~~l~~H-~~~Vt~l~~spd 675 (917)
++.|+.|++||+.+++.. .+..+...+.+++|+|+++++++++ ++.|++||+.+ ++......+| ...+.+++|+|+
T Consensus 18 ~~~~~~i~~~d~~~~~~~-~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spd 95 (297)
T 2ojh_A 18 GSMRSSIEIFNIRTRKMR-VVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHGISPD 95 (297)
T ss_dssp CCCCEEEEEEETTTTEEE-EEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCEECTT
T ss_pred CCcceeEEEEeCCCCcee-eeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccccccccceEECCC
Confidence 457899999999988765 4555788899999999999999986 88999999999 8877776666 478899999999
Q ss_pred CCEEEEEE--CCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEE-EEECCCeEEEEEC--CCCeeeEE
Q psy3053 676 RKRLISGS--WDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLA-VGTEAGELIIWSL--ENHLMTQQ 750 (917)
Q Consensus 676 ~~~L~Sgs--~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~La-sgs~dG~I~iwDl--~~~~~~~~ 750 (917)
++.|++++ .++...+|.+..... ... .......+.+++|+|+++.++ +++.++.+.+|++ .++.. ..
T Consensus 96 g~~l~~~~~~~~~~~~l~~~~~~~~------~~~-~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~-~~ 167 (297)
T 2ojh_A 96 GALYAISDKVEFGKSAIYLLPSTGG------TPR-LMTKNLPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVE-TR 167 (297)
T ss_dssp SSEEEEEECTTTSSCEEEEEETTCC------CCE-ECCSSSSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCE-EE
T ss_pred CCEEEEEEeCCCCcceEEEEECCCC------ceE-EeecCCCccceEECCCCCEEEEEECCCCceEEEEEECCCCcc-eE
Confidence 99999999 445566665432210 111 223334588999999999887 7788999999985 34433 44
Q ss_pred ecCCCCCCeEEEEEecCCCEEEEEe-CCCeEEEEECC-CCeEEEE-eecCCceEEEEEeCCCE-EEEEeCC---------
Q psy3053 751 LSDDINASVNGVLFSEDGCRVLSCG-NNCMLNVYDLT-TGMQVCN-KVFEEKLLCLSWAGEEK-VILGGAL--------- 817 (917)
Q Consensus 751 l~~~h~~~V~~v~fspdg~~L~s~s-~Dg~I~iwDl~-tg~~i~~-~~~~~~i~~l~~s~~~~-lv~gs~d--------- 817 (917)
+. .+...+.+++|+|+|+.+++++ .++.+.+|++. .+..... ..+...+.+++|++++. +++++.+
T Consensus 168 ~~-~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~ 246 (297)
T 2ojh_A 168 LT-HGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRD 246 (297)
T ss_dssp CC-CSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSS
T ss_pred cc-cCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCccccc
Confidence 44 5678899999999999888776 48889999875 3333333 33455688899998775 5555544
Q ss_pred --CeEEEEECCCCEE--EEEEecCCCceEEE--eecCCEEEEEeCCC
Q psy3053 818 --GMVYLVDLIQVQL--LKQVRAHKDAVLSL--HFDNCTMLVGCWDS 858 (917)
Q Consensus 818 --G~I~vwdl~~~~~--i~~l~~h~~~V~si--s~dg~~Lasgs~DG 858 (917)
+.|++||+.+++. +..+.+|...+.++ +|+++.|++++.+.
T Consensus 247 ~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 247 LDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp EEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred CceEEEEEecCCCCceeeeccCCCCcccccceECCCCCEEEEEEecc
Confidence 5699999988754 44555777777766 67899988887654
No 150
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.83 E-value=1.3e-17 Score=185.01 Aligned_cols=271 Identities=11% Similarity=0.132 Sum_probs=181.2
Q ss_pred CCceEEEecc--CCceee-eeeccccceEEEEEeCCCCEEEEEec---ccEEEEEEeccCe--eeEEeccCCCceeEEEe
Q psy3053 601 DAMLKIHSLK--TGRQER-SAVLSSMTLSSLCILPDNCTMLVGCW---DSCVVIYDVECGR--IVTELAGHEDAISCVAW 672 (917)
Q Consensus 601 Dg~I~IWd~~--t~~~~~-~~~~~~~~V~sl~~spd~~~Lasgs~---Dg~I~Iwdl~tg~--~i~~l~~H~~~Vt~l~~ 672 (917)
++.|.+|.++ +++... ....+......++|+||++ +++++. ++.|++|++.+++ .+..+..+...+..++|
T Consensus 15 ~~~i~v~~~d~~tg~~~~~~~~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~ 93 (347)
T 3hfq_A 15 SQGIYQGTLDTTAKTLTNDGLLAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAV 93 (347)
T ss_dssp CCEEEEEEEETTTTEEEEEEEEEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEE
T ss_pred CCCEEEEEEcCCCCeEEEeeeeeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEE
Confidence 5567777765 444332 2233445677899999999 555554 6899999998776 34455567788999999
Q ss_pred cCCCCEEEEEE-CCCeEEEEeCCCCCCCccCCcceeeec---------cCCCceEEEEEeCCCCEEEEEECCCeEEEEEC
Q psy3053 673 DEKRKRLISGS-WDCTVRVWNTGASWSHMKPSKSLVSQL---------DLDNRIKCLAISKDNNQLAVGTEAGELIIWSL 742 (917)
Q Consensus 673 spd~~~L~Sgs-~DgtI~vWdl~~~~~~~~~~~~~~~~~---------~h~~~V~~l~~spdg~~Lasgs~dG~I~iwDl 742 (917)
+|++++|++++ .+++|.+|++...... ....... .....+.+++|+|+|++++++..++.|.+|++
T Consensus 94 spdg~~l~~~~~~~~~v~v~~~~~~g~~----~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~ 169 (347)
T 3hfq_A 94 DEARQLVYSANYHKGTAEVMKIAADGAL----TLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNV 169 (347)
T ss_dssp ETTTTEEEEEETTTTEEEEEEECTTSCE----EEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEE
T ss_pred CCCCCEEEEEeCCCCEEEEEEeCCCCCe----eecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEE
Confidence 99999999888 7899999998643110 0111111 12235889999999996666667889999999
Q ss_pred C-CCeeeE--EecCCCCCCeEEEEEecCCCEEEEE-eCCCeEEEEECCC--CeEEEEeecCCceEEEEEeCCCEEEEEeC
Q psy3053 743 E-NHLMTQ--QLSDDINASVNGVLFSEDGCRVLSC-GNNCMLNVYDLTT--GMQVCNKVFEEKLLCLSWAGEEKVILGGA 816 (917)
Q Consensus 743 ~-~~~~~~--~l~~~h~~~V~~v~fspdg~~L~s~-s~Dg~I~iwDl~t--g~~i~~~~~~~~i~~l~~s~~~~lv~gs~ 816 (917)
. +++... .........+..++|+|||++++++ ..++.+.+|++.. ++...... +...+.
T Consensus 170 ~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~-------~~~~~~-------- 234 (347)
T 3hfq_A 170 SDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGI-------VKTIPA-------- 234 (347)
T ss_dssp CTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEE-------EESSCT--------
T ss_pred CCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeee-------eeecCC--------
Confidence 8 554332 2222234467889999999966664 5678899998763 33211000 000000
Q ss_pred CCeEEEEECCCCEEEEEEecCCCceE--EEeecCCEE-EEEeCCCeEEEEECc---CCeEEEEecCCCCCEEEEEEcCCC
Q psy3053 817 LGMVYLVDLIQVQLLKQVRAHKDAVL--SLHFDNCTM-LVGCWDSCVVIYDVE---CGRIVTELAGHEDAISCVAWDEKR 890 (917)
Q Consensus 817 dG~I~vwdl~~~~~i~~l~~h~~~V~--sis~dg~~L-asgs~DG~I~Iwdl~---tg~~l~~l~~h~~~V~slafSpdg 890 (917)
+ . .....+. +++|||++| +++..++.|.+|++. +.+.+..+..+...+.+++|+|||
T Consensus 235 -----------~-----~-~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg 297 (347)
T 3hfq_A 235 -----------D-----Y-TAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTE 297 (347)
T ss_dssp -----------T-----C-CSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTS
T ss_pred -----------C-----C-CCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCC
Confidence 0 0 0011233 347788877 455568999999986 235566677677778999999999
Q ss_pred CEEEEEeCC-CcEEEEecC
Q psy3053 891 KRLISGNLV-GAPKLYATE 908 (917)
Q Consensus 891 ~~LaSgs~D-G~V~IWdl~ 908 (917)
++|++++.+ +.|.+|+++
T Consensus 298 ~~l~v~~~~~~~v~v~~~d 316 (347)
T 3hfq_A 298 AFVVVVNQNTDNATLYARD 316 (347)
T ss_dssp SEEEEEETTTTEEEEEEEC
T ss_pred CEEEEEEcCCCcEEEEEEe
Confidence 999888765 899999654
No 151
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.83 E-value=2.6e-18 Score=193.24 Aligned_cols=302 Identities=12% Similarity=0.088 Sum_probs=208.7
Q ss_pred ccCCccccceeeeccCCcceEE-----EEEeCCCcEEEEEec-CCc--eEEEeccCCceeeeeeccccceEEEEEeCCCC
Q psy3053 564 WCDKSILEPLHFCHSHKEAITA-----VAICGEGISVASVGR-DAM--LKIHSLKTGRQERSAVLSSMTLSSLCILPDNC 635 (917)
Q Consensus 564 w~~~~~l~~~~~l~~H~~~Vts-----v~fSpdg~~Lasgs~-Dg~--I~IWd~~t~~~~~~~~~~~~~V~sl~~spd~~ 635 (917)
|-.......+..+..|...+.. .+|||||+.|+.++. +|. |.+||+.+++..+....+...+...+|+||++
T Consensus 14 ~~~~~~g~~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~ 93 (388)
T 3pe7_A 14 YQDASTGAQVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDD 93 (388)
T ss_dssp EECTTTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSS
T ss_pred EecCCCCcceEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCC
Confidence 4333333455667777766666 899999999998887 674 77889888887776666666666778999999
Q ss_pred EEEEEecccEEEEEEeccCeeeEEeccCCCceeEEEe--cCCCCEEEEEE----------------------CCCeEEEE
Q psy3053 636 TMLVGCWDSCVVIYDVECGRIVTELAGHEDAISCVAW--DEKRKRLISGS----------------------WDCTVRVW 691 (917)
Q Consensus 636 ~Lasgs~Dg~I~Iwdl~tg~~i~~l~~H~~~Vt~l~~--spd~~~L~Sgs----------------------~DgtI~vW 691 (917)
.|+.++.++.|++||+.+++.......+...+....| ++++..++... .++.|.+|
T Consensus 94 ~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 173 (388)
T 3pe7_A 94 ALFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRV 173 (388)
T ss_dssp EEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEE
T ss_pred EEEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEE
Confidence 9999999999999999999887777767666654444 88999887432 44789999
Q ss_pred eCCCCCCCccCCcceeeeccCCCceEEEEEeC-CCCEEEEEECC------CeEEEEECCCCeeeEEecCCCC-CCeEEEE
Q psy3053 692 NTGASWSHMKPSKSLVSQLDLDNRIKCLAISK-DNNQLAVGTEA------GELIIWSLENHLMTQQLSDDIN-ASVNGVL 763 (917)
Q Consensus 692 dl~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp-dg~~Lasgs~d------G~I~iwDl~~~~~~~~l~~~h~-~~V~~v~ 763 (917)
|+.++ .......+...+..++|+| +|+.|+.+..+ ..|.++|+.++.. ..+..... ..+...+
T Consensus 174 d~~~g--------~~~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~-~~l~~~~~~~~~~~~~ 244 (388)
T 3pe7_A 174 DLKTG--------ESTVILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNM-RKVKTHAEGESCTHEF 244 (388)
T ss_dssp ETTTC--------CEEEEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCC-EESCCCCTTEEEEEEE
T ss_pred ECCCC--------ceEEeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCce-EEeeeCCCCcccccce
Confidence 98876 2233345566789999999 99999887764 3788888876544 33432222 3578899
Q ss_pred EecCCCEEEEEeC-CC----eEEEEECCCCeEEEEeecCCceEEEEEeCCCEEEEEeCCCeEEEEECCCCEEEEEEecCC
Q psy3053 764 FSEDGCRVLSCGN-NC----MLNVYDLTTGMQVCNKVFEEKLLCLSWAGEEKVILGGALGMVYLVDLIQVQLLKQVRAHK 838 (917)
Q Consensus 764 fspdg~~L~s~s~-Dg----~I~iwDl~tg~~i~~~~~~~~i~~l~~s~~~~lv~gs~dG~I~vwdl~~~~~i~~l~~h~ 838 (917)
|+|||+.|+..+. ++ .|++||+.+++......... .....++ ..
T Consensus 245 ~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~-~~~~~~~------------------------------~~ 293 (388)
T 3pe7_A 245 WVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPA-CSHLMSN------------------------------YD 293 (388)
T ss_dssp ECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECC-EEEEEEC------------------------------TT
T ss_pred ECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCC-ceeeeec------------------------------CC
Confidence 9999998866543 22 38889988776432111111 0000000 11
Q ss_pred CceEEEeecCCEEEEE---------eCCCeEEEEECcCCeEEEEecCCCC-----------CEEEEEEcCCCCEEEEEe-
Q psy3053 839 DAVLSLHFDNCTMLVG---------CWDSCVVIYDVECGRIVTELAGHED-----------AISCVAWDEKRKRLISGN- 897 (917)
Q Consensus 839 ~~V~sis~dg~~Lasg---------s~DG~I~Iwdl~tg~~l~~l~~h~~-----------~V~slafSpdg~~LaSgs- 897 (917)
+. .++|||+.|+.. ..+..|++||+.+++.. .+..|.. .+.+++|+|||+.|+.++
T Consensus 294 ~~--~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~ 370 (388)
T 3pe7_A 294 GS--LMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQH-RVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSD 370 (388)
T ss_dssp SS--EEEEEECCC------------CCCCEEEEEETTTTEEE-EEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEEC
T ss_pred CC--eEccCCCcceeEeeeccccccCCCCEEEEEeccCCceE-EeccccCcccccccccccCCCCccCCCCCCEEEEEec
Confidence 11 357888776653 45678999999988763 4444554 578899999999888665
Q ss_pred CCCcEEEEecC
Q psy3053 898 LVGAPKLYATE 908 (917)
Q Consensus 898 ~DG~V~IWdl~ 908 (917)
.+|...+|.++
T Consensus 371 ~~g~~~l~~~~ 381 (388)
T 3pe7_A 371 VHGKPALYLAT 381 (388)
T ss_dssp TTSSCEEEEEE
T ss_pred CCCceeEEEEE
Confidence 57777777664
No 152
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.83 E-value=2e-18 Score=190.33 Aligned_cols=275 Identities=12% Similarity=0.116 Sum_probs=190.1
Q ss_pred EEEEeCCCCEEEEEecccEEEEEEeccCeeeEEeccCC-CceeEEEecCCCCEEE-EEECCCeEEEEeCCCCCCCccCCc
Q psy3053 627 SLCILPDNCTMLVGCWDSCVVIYDVECGRIVTELAGHE-DAISCVAWDEKRKRLI-SGSWDCTVRVWNTGASWSHMKPSK 704 (917)
Q Consensus 627 sl~~spd~~~Lasgs~Dg~I~Iwdl~tg~~i~~l~~H~-~~Vt~l~~spd~~~L~-Sgs~DgtI~vWdl~~~~~~~~~~~ 704 (917)
.+++++++..+++++.++.|++||..+++.+..+..+. ..+..++|+|+++.++ +++.++.|.+||+.++.
T Consensus 4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~------- 76 (349)
T 1jmx_B 4 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCK------- 76 (349)
T ss_dssp CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTE-------
T ss_pred cccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCc-------
Confidence 34577888899999999999999999999888877543 2578999999998665 45578999999997752
Q ss_pred ceeeec-cC-----CCceEEEEEeCCCCEEEEEECC------------CeEEEEECCCCee---eEEecCCCCCCeEEEE
Q psy3053 705 SLVSQL-DL-----DNRIKCLAISKDNNQLAVGTEA------------GELIIWSLENHLM---TQQLSDDINASVNGVL 763 (917)
Q Consensus 705 ~~~~~~-~h-----~~~V~~l~~spdg~~Lasgs~d------------G~I~iwDl~~~~~---~~~l~~~h~~~V~~v~ 763 (917)
...... .+ ...+.+++|+|+|+.+++++.+ +.|.+||+.+++. +.... +...+.+++
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~--~~~~~~~~~ 154 (349)
T 1jmx_B 77 NTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFP--MPRQVYLMR 154 (349)
T ss_dssp EEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEE--CCSSCCCEE
T ss_pred EEEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeecc--CCCccccee
Confidence 111111 11 2237889999999999998865 8999999988543 33333 344688999
Q ss_pred EecCCCEEEEEeCCCeEEEEECCCCeEEEEeecCC-------------------------ceEEEEEeCCCEEE--EEeC
Q psy3053 764 FSEDGCRVLSCGNNCMLNVYDLTTGMQVCNKVFEE-------------------------KLLCLSWAGEEKVI--LGGA 816 (917)
Q Consensus 764 fspdg~~L~s~s~Dg~I~iwDl~tg~~i~~~~~~~-------------------------~i~~l~~s~~~~lv--~gs~ 816 (917)
|+|+|+ +++++. .|.+||..+++......... ...++++.+++... ....
T Consensus 155 ~s~dg~-l~~~~~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 231 (349)
T 1jmx_B 155 AADDGS-LYVAGP--DIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADL 231 (349)
T ss_dssp ECTTSC-EEEESS--SEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEE
T ss_pred ECCCCc-EEEccC--cEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCcccccc
Confidence 999999 666543 49999999998776655432 23334444322100 0000
Q ss_pred CCeEEEEECCCCEEE-EEEecCCCceEEE--ee-cCCEEEEEeCCCeEEEEECcCCeEEEEecCCCCCEEEEEEcCCCCE
Q psy3053 817 LGMVYLVDLIQVQLL-KQVRAHKDAVLSL--HF-DNCTMLVGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKR 892 (917)
Q Consensus 817 dG~I~vwdl~~~~~i-~~l~~h~~~V~si--s~-dg~~Lasgs~DG~I~Iwdl~tg~~l~~l~~h~~~V~slafSpdg~~ 892 (917)
...+..++..+++.. ..+..+...+.++ ++ ++++++++ ++.|.+||+.+++.+..+..+ ..+.+++|+|+|++
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~ 308 (349)
T 1jmx_B 232 LYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAANLD-HTYYCVAFDKKGDK 308 (349)
T ss_dssp EEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEECS-SCCCEEEECSSSSC
T ss_pred ceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEcCC-CCccceEECCCCCE
Confidence 011222344433321 1112234444444 78 99999888 889999999999988887643 45678999999999
Q ss_pred EEEEeCCCcEEEEecCcc-eEEEEe
Q psy3053 893 LISGNLVGAPKLYATEFY-LLYVLT 916 (917)
Q Consensus 893 LaSgs~DG~V~IWdl~~~-ll~~Lt 916 (917)
|++++.++.|.+||++.. .+..+.
T Consensus 309 l~~~~~~~~v~v~d~~~~~~~~~~~ 333 (349)
T 1jmx_B 309 LYLGGTFNDLAVFNPDTLEKVKNIK 333 (349)
T ss_dssp EEEESBSSEEEEEETTTTEEEEEEE
T ss_pred EEEecCCCeEEEEeccccceeeeee
Confidence 999999999999999754 555553
No 153
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.83 E-value=9.3e-19 Score=209.07 Aligned_cols=269 Identities=11% Similarity=0.015 Sum_probs=201.3
Q ss_pred cccceEEEEEeCCCCEEEEEec-ccEEEEEEeccCeeeEEeccCCCceeEEEecCCCCEEEEEEC---CCeEEEEeCCC-
Q psy3053 621 SSMTLSSLCILPDNCTMLVGCW-DSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGSW---DCTVRVWNTGA- 695 (917)
Q Consensus 621 ~~~~V~sl~~spd~~~Lasgs~-Dg~I~Iwdl~tg~~i~~l~~H~~~Vt~l~~spd~~~L~Sgs~---DgtI~vWdl~~- 695 (917)
...+|.+++++|||+.||+++. ||++.||++++++..+....+...+.+++|+|| +.+++++. +....+|.+..
T Consensus 20 ~~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~ 98 (582)
T 3o4h_A 20 IAVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETVKLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTS 98 (582)
T ss_dssp HHSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEEECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEETT
T ss_pred hccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcEeeecccccccccccCCCC-eEEEEeccCCCCcceEEEEEecc
Confidence 3567999999999999999887 999999999777665544434368999999999 77887775 45566765543
Q ss_pred -CCCCccCCcceeeeccCCCceEEEEEeCCCCE-EEEEECCCeEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEE
Q psy3053 696 -SWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQ-LAVGTEAGELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLS 773 (917)
Q Consensus 696 -~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~-Lasgs~dG~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s 773 (917)
... .. .. .....+...+|+|+|+. +++++.++.+.+||+.+++...... .+ . .+++|||||+.+++
T Consensus 99 ~~g~------~~-~l-~~~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~-~~-~--~~~~~spDG~~la~ 166 (582)
T 3o4h_A 99 RPGE------EQ-RL-EAVKPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELAR-LP-G--FGFVSDIRGDLIAG 166 (582)
T ss_dssp STTC------CE-EC-TTSCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEE-ES-S--CEEEEEEETTEEEE
T ss_pred CCCc------cc-cc-cCCCCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeec-CC-C--ceEEECCCCCEEEE
Confidence 210 11 11 12223456788888853 3444445556699999987665544 22 2 78999999999998
Q ss_pred EeCC----CeEEEEECCCCeEEEEeecCCceEEEEEeCCCE-EEEEeCCC--eEEEEECCCCEEEEEEecCCCceE--E-
Q psy3053 774 CGNN----CMLNVYDLTTGMQVCNKVFEEKLLCLSWAGEEK-VILGGALG--MVYLVDLIQVQLLKQVRAHKDAVL--S- 843 (917)
Q Consensus 774 ~s~D----g~I~iwDl~tg~~i~~~~~~~~i~~l~~s~~~~-lv~gs~dG--~I~vwdl~~~~~i~~l~~h~~~V~--s- 843 (917)
++.+ +.|++||+.+++......+...+..++|+|+|. ++++..+| .|++||+.+++.. .+.+|...+. .
T Consensus 167 ~~~~~~~~~~i~~~d~~~g~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~ 245 (582)
T 3o4h_A 167 LGFFGGGRVSLFTSNLSSGGLRVFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLELPSKDFSSYRP 245 (582)
T ss_dssp EEEEETTEEEEEEEETTTCCCEEECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCCSCSHHHHHCC
T ss_pred EEEcCCCCeEEEEEcCCCCCceEeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccCCCcChhhhhh
Confidence 8877 789999999888765556667789999999886 44556677 8999999998887 6666765443 2
Q ss_pred -------EeecCCEEEEEeCCCeEEEEECcCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCc---EEEEecCc
Q psy3053 844 -------LHFDNCTMLVGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGNLVGA---PKLYATEF 909 (917)
Q Consensus 844 -------is~dg~~Lasgs~DG~I~Iwdl~tg~~l~~l~~h~~~V~slafSpdg~~LaSgs~DG~---V~IWdl~~ 909 (917)
++|||.++++++.||.+++|++ |+... .+.+.|.+++|+ +++.+++++.+.+ +.+|+.++
T Consensus 246 ~~~~~~~~spdg~~~~~~~~~g~~~l~~~--g~~~~---~~~~~v~~~~~s-dg~~l~~~s~~~~p~~l~~~d~~~ 315 (582)
T 3o4h_A 246 TAITWLGYLPDGRLAVVARREGRSAVFID--GERVE---APQGNHGRVVLW-RGKLVTSHTSLSTPPRIVSLPSGE 315 (582)
T ss_dssp SEEEEEEECTTSCEEEEEEETTEEEEEET--TEEEC---CCSSEEEEEEEE-TTEEEEEEEETTEEEEEEEETTCC
T ss_pred ccccceeEcCCCcEEEEEEcCCcEEEEEE--CCeec---cCCCceEEEEec-CCEEEEEEcCCCCCCeEEEEcCCC
Confidence 6789989999999999999999 76654 345679999999 9999999887744 67777665
No 154
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.82 E-value=2.8e-18 Score=189.18 Aligned_cols=285 Identities=13% Similarity=0.067 Sum_probs=198.7
Q ss_pred EEEEEeCCCcEEEEEecCCceEEEeccCCceeeeeeccc-cceEEEEEeCCCCEEE-EEecccEEEEEEeccCeeeEEec
Q psy3053 584 TAVAICGEGISVASVGRDAMLKIHSLKTGRQERSAVLSS-MTLSSLCILPDNCTML-VGCWDSCVVIYDVECGRIVTELA 661 (917)
Q Consensus 584 tsv~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~~~~~~-~~V~sl~~spd~~~La-sgs~Dg~I~Iwdl~tg~~i~~l~ 661 (917)
+++++++++.++++++.++.|.+||..+++....+..+. ..+..++|+|+++.++ ++..++.|.+||+.+++.+..+.
T Consensus 3 ~g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~ 82 (349)
T 1jmx_B 3 TGPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHAN 82 (349)
T ss_dssp -CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred ccccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEE
Confidence 356788899999999999999999999998887776543 2567899999998665 45568999999999998887776
Q ss_pred cCC------CceeEEEecCCCCEEEEEECC------------CeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeC
Q psy3053 662 GHE------DAISCVAWDEKRKRLISGSWD------------CTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISK 723 (917)
Q Consensus 662 ~H~------~~Vt~l~~spd~~~L~Sgs~D------------gtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp 723 (917)
.+. ..+.+++|+|+|+++++++.+ +.|.+||+.++.. ........+...+.+++|+|
T Consensus 83 ~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~-----~~~~~~~~~~~~~~~~~~s~ 157 (349)
T 1jmx_B 83 LSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLE-----AKPVRTFPMPRQVYLMRAAD 157 (349)
T ss_dssp SCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGG-----BCCSEEEECCSSCCCEEECT
T ss_pred cccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccc-----cceeeeccCCCcccceeECC
Confidence 332 337899999999999998866 9999999876411 01111223445688999999
Q ss_pred CCCEEEEEECCCeEEEEECCCCeeeEEecCCCCC-----------------------CeEEEEEecCCCEEEEEeCC-Ce
Q psy3053 724 DNNQLAVGTEAGELIIWSLENHLMTQQLSDDINA-----------------------SVNGVLFSEDGCRVLSCGNN-CM 779 (917)
Q Consensus 724 dg~~Lasgs~dG~I~iwDl~~~~~~~~l~~~h~~-----------------------~V~~v~fspdg~~L~s~s~D-g~ 779 (917)
+|+ +++++ +.|.+||+.+++....+...... ....+++++++......... ..
T Consensus 158 dg~-l~~~~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 234 (349)
T 1jmx_B 158 DGS-LYVAG--PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYG 234 (349)
T ss_dssp TSC-EEEES--SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEE
T ss_pred CCc-EEEcc--CcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCcccccccee
Confidence 999 55554 34999999999887776522100 33456666554221110001 11
Q ss_pred EEEEECCCCeEEE--EeecCCceEEEEEeC-CCEEEEEeCCCeEEEEECCCCEEEEEEecCC-CceEEEeecCCEEEEEe
Q psy3053 780 LNVYDLTTGMQVC--NKVFEEKLLCLSWAG-EEKVILGGALGMVYLVDLIQVQLLKQVRAHK-DAVLSLHFDNCTMLVGC 855 (917)
Q Consensus 780 I~iwDl~tg~~i~--~~~~~~~i~~l~~s~-~~~lv~gs~dG~I~vwdl~~~~~i~~l~~h~-~~V~sis~dg~~Lasgs 855 (917)
+..+|..+++... .......+.++++++ ++..+..+ ++.|.+||+.+++.+..+.... ..-.+++++++.|++++
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~-~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~ 313 (349)
T 1jmx_B 235 YLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV-LNRLAKYDLKQRKLIKAANLDHTYYCVAFDKKGDKLYLGG 313 (349)
T ss_dssp EEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE-ESEEEEEETTTTEEEEEEECSSCCCEEEECSSSSCEEEES
T ss_pred EEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE-cCeEEEEECccCeEEEEEcCCCCccceEECCCCCEEEEec
Confidence 2224544443221 112445678899998 77655544 8999999999999888776432 22334477898888888
Q ss_pred CCCeEEEEECcCCeEEEEecCC
Q psy3053 856 WDSCVVIYDVECGRIVTELAGH 877 (917)
Q Consensus 856 ~DG~I~Iwdl~tg~~l~~l~~h 877 (917)
.++.|.+||+.+++.+..+...
T Consensus 314 ~~~~v~v~d~~~~~~~~~~~~~ 335 (349)
T 1jmx_B 314 TFNDLAVFNPDTLEKVKNIKLP 335 (349)
T ss_dssp BSSEEEEEETTTTEEEEEEECS
T ss_pred CCCeEEEEeccccceeeeeecC
Confidence 8999999999999998887654
No 155
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.80 E-value=9.2e-19 Score=209.14 Aligned_cols=267 Identities=9% Similarity=-0.043 Sum_probs=191.2
Q ss_pred CCcceEEEEEeCCCcEEEEEec-CCceEEEeccCCceeeeeeccccceEEEEEeCCCCEEEEEec---ccEEEEEEecc-
Q psy3053 579 HKEAITAVAICGEGISVASVGR-DAMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTMLVGCW---DSCVVIYDVEC- 653 (917)
Q Consensus 579 H~~~Vtsv~fSpdg~~Lasgs~-Dg~I~IWd~~t~~~~~~~~~~~~~V~sl~~spd~~~Lasgs~---Dg~I~Iwdl~t- 653 (917)
+..+|.+++|+|||+.||+++. ||+++||++.+++..+....+...+.+++|+|| +.+++++. +....+|.++.
T Consensus 20 ~~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~ 98 (582)
T 3o4h_A 20 IAVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETVKLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTS 98 (582)
T ss_dssp HHSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEEECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEETT
T ss_pred hccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcEeeecccccccccccCCCC-eEEEEeccCCCCcceEEEEEecc
Confidence 3567999999999999999887 999999999766554433333367899999999 77777765 45566666543
Q ss_pred --CeeeEEeccCCCceeEEEecCCCC--EEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEE
Q psy3053 654 --GRIVTELAGHEDAISCVAWDEKRK--RLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLA 729 (917)
Q Consensus 654 --g~~i~~l~~H~~~Vt~l~~spd~~--~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~La 729 (917)
+... .+..+. .+...+|+|+++ .+++++. +.+.+||+.++ .......+.. .+++|+|||+.++
T Consensus 99 ~~g~~~-~l~~~~-~~~~~~~s~dg~~~~~~s~~~-~~~~l~d~~~g--------~~~~l~~~~~--~~~~~spDG~~la 165 (582)
T 3o4h_A 99 RPGEEQ-RLEAVK-PMRILSGVDTGEAVVFTGATE-DRVALYALDGG--------GLRELARLPG--FGFVSDIRGDLIA 165 (582)
T ss_dssp STTCCE-ECTTSC-SBEEEEEEECSSCEEEEEECS-SCEEEEEEETT--------EEEEEEEESS--CEEEEEEETTEEE
T ss_pred CCCccc-cccCCC-CceeeeeCCCCCeEEEEecCC-CCceEEEccCC--------cEEEeecCCC--ceEEECCCCCEEE
Confidence 3322 343322 344668888875 3444444 44559998765 2222222222 7899999999999
Q ss_pred EEECC----CeEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEEeCCC--eEEEEECCCCeEEEEeecCCceEEE
Q psy3053 730 VGTEA----GELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCGNNC--MLNVYDLTTGMQVCNKVFEEKLLCL 803 (917)
Q Consensus 730 sgs~d----G~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~Dg--~I~iwDl~tg~~i~~~~~~~~i~~l 803 (917)
+++.+ +.|++||+.+++.. .+. .+.+.+..++|||||+.|+++..++ .|++||+.+++......+...+..+
T Consensus 166 ~~~~~~~~~~~i~~~d~~~g~~~-~l~-~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~ 243 (582)
T 3o4h_A 166 GLGFFGGGRVSLFTSNLSSGGLR-VFD-SGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVEDLELPSKDFSSY 243 (582)
T ss_dssp EEEEEETTEEEEEEEETTTCCCE-EEC-CSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEEECCCSCSHHHHH
T ss_pred EEEEcCCCCeEEEEEcCCCCCce-Eee-cCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEEEccCCCcChhhh
Confidence 88877 78999999988765 444 6778899999999999999888888 8999999998877222233444445
Q ss_pred E--------EeCCCE-EEEEeCCCeEEEEECCCCEEEEEEecCCCceEEE--eecCCEEEEEeCCC---eEEEEECcC
Q psy3053 804 S--------WAGEEK-VILGGALGMVYLVDLIQVQLLKQVRAHKDAVLSL--HFDNCTMLVGCWDS---CVVIYDVEC 867 (917)
Q Consensus 804 ~--------~s~~~~-lv~gs~dG~I~vwdl~~~~~i~~l~~h~~~V~si--s~dg~~Lasgs~DG---~I~Iwdl~t 867 (917)
+ |+|++. +++++.+|.+++|++ ++... ...+.+.++ + +++.+++++.+. .+.+|+..+
T Consensus 244 ~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~--g~~~~---~~~~~v~~~~~s-dg~~l~~~s~~~~p~~l~~~d~~~ 315 (582)
T 3o4h_A 244 RPTAITWLGYLPDGRLAVVARREGRSAVFID--GERVE---APQGNHGRVVLW-RGKLVTSHTSLSTPPRIVSLPSGE 315 (582)
T ss_dssp CCSEEEEEEECTTSCEEEEEEETTEEEEEET--TEEEC---CCSSEEEEEEEE-TTEEEEEEEETTEEEEEEEETTCC
T ss_pred hhccccceeEcCCCcEEEEEEcCCcEEEEEE--CCeec---cCCCceEEEEec-CCEEEEEEcCCCCCCeEEEEcCCC
Confidence 5 998875 456778999999999 66554 334566666 5 888888888774 466666543
No 156
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.80 E-value=2.4e-17 Score=202.97 Aligned_cols=324 Identities=10% Similarity=0.006 Sum_probs=218.1
Q ss_pred ceEEEEEeCCCcEEEEEecCCceEEEeccCCceeeeeeccccc-----eEEEEEeCCCCEEEEEecc---------cEEE
Q psy3053 582 AITAVAICGEGISVASVGRDAMLKIHSLKTGRQERSAVLSSMT-----LSSLCILPDNCTMLVGCWD---------SCVV 647 (917)
Q Consensus 582 ~Vtsv~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~~~~~~~~-----V~sl~~spd~~~Lasgs~D---------g~I~ 647 (917)
...+++|+|||++++++ ||.|++||+.+++....+..+... ..+.+|||||+.|+.++.+ +.+.
T Consensus 18 ~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~ 95 (740)
T 4a5s_A 18 KLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYD 95 (740)
T ss_dssp CCCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEE
T ss_pred cccccEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEE
Confidence 45689999999988886 999999999999887766666432 2347899999999999876 5677
Q ss_pred EEEeccCeeeEEeccCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCC--cceeeeccCC---------Cce
Q psy3053 648 IYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPS--KSLVSQLDLD---------NRI 716 (917)
Q Consensus 648 Iwdl~tg~~i~~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~--~~~~~~~~h~---------~~V 716 (917)
+||+.+++.. .+..|.+.+...+|||||+.||.++ |+.|.+|++.++....... .......++. +..
T Consensus 96 ~~d~~~~~~~-~l~~~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~ 173 (740)
T 4a5s_A 96 IYDLNKRQLI-TEERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAY 173 (740)
T ss_dssp EEETTTTEEC-CSSCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSS
T ss_pred EEECCCCcEE-EcccCCCcceeeEECCCCCEEEEEE-CCeEEEEECCCCceEEEcCCCCccceecCcccccccchhcCCC
Confidence 9999998865 4667888999999999999999885 7899999987763110000 0000011111 222
Q ss_pred EEEEEeCCCCEEEEEECCC------------------------------------eEEEEECCC---Ce--eeEEecC--
Q psy3053 717 KCLAISKDNNQLAVGTEAG------------------------------------ELIIWSLEN---HL--MTQQLSD-- 753 (917)
Q Consensus 717 ~~l~~spdg~~Lasgs~dG------------------------------------~I~iwDl~~---~~--~~~~l~~-- 753 (917)
..++|||||+.||.++.|. .|.+||+.+ +. ....+..
T Consensus 174 ~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~ 253 (740)
T 4a5s_A 174 SALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPA 253 (740)
T ss_dssp BCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCH
T ss_pred cceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCc
Confidence 4589999999999875321 588899988 73 2233332
Q ss_pred ---CCCCCeEEEEEecCCCEEEEEeC----CCeEEEEECCCCe----EE-----EEeecCCce-----EEEEEeCCCE-E
Q psy3053 754 ---DINASVNGVLFSEDGCRVLSCGN----NCMLNVYDLTTGM----QV-----CNKVFEEKL-----LCLSWAGEEK-V 811 (917)
Q Consensus 754 ---~h~~~V~~v~fspdg~~L~s~s~----Dg~I~iwDl~tg~----~i-----~~~~~~~~i-----~~l~~s~~~~-l 811 (917)
++...+..++|+|||+.++.... +..|.+||+.+++ +. ....+...+ ...+|+|++. +
T Consensus 254 ~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l 333 (740)
T 4a5s_A 254 SMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSF 333 (740)
T ss_dssp HHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEE
T ss_pred cCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEcCCCCEE
Confidence 26778999999999997665543 3479999998876 21 112223222 3678998875 3
Q ss_pred E-EEe-CC--CeEEEEECCCCEEEEEEecCCCceEEE-eecCCEEEEEeCC-----CeEEEE--ECcCCeEEEEecC---
Q psy3053 812 I-LGG-AL--GMVYLVDLIQVQLLKQVRAHKDAVLSL-HFDNCTMLVGCWD-----SCVVIY--DVECGRIVTELAG--- 876 (917)
Q Consensus 812 v-~gs-~d--G~I~vwdl~~~~~i~~l~~h~~~V~si-s~dg~~Lasgs~D-----G~I~Iw--dl~tg~~l~~l~~--- 876 (917)
+ ..+ .+ ..|++||+.++... .+......+..+ .+|++.|+..+.. +...+| ++..+.....+..
T Consensus 334 ~~~~s~~~G~~~l~~~~~~~~~~~-~lT~g~~~v~~~~~~d~~~i~f~~~~~~~~~~~~~ly~v~~~g~~~~~~lt~~~~ 412 (740)
T 4a5s_A 334 YKIISNEEGYRHICYFQIDKKDCT-FITKGTWEVIGIEALTSDYLYYISNEYKGMPGGRNLYKIQLIDYTKVTCLSCELN 412 (740)
T ss_dssp EEEEECTTSCEEEEEEETTCSSCE-ESCCSSSCEEEEEEECSSEEEEEESCGGGCTTCBEEEEEETTEEEEEEESSTTTS
T ss_pred EEEEEcCCCceEEEEEECCCCceE-ecccCCEEEEEEEEEeCCEEEEEEecCCCCCceeEEEEEECCCCCcceeeccccC
Confidence 3 443 33 46888898876554 344445555555 5777776655443 334454 5544443334442
Q ss_pred -CCCCEEEEEEcCCCCEEEEEeCC---CcEEEEecCcc
Q psy3053 877 -HEDAISCVAWDEKRKRLISGNLV---GAPKLYATEFY 910 (917)
Q Consensus 877 -h~~~V~slafSpdg~~LaSgs~D---G~V~IWdl~~~ 910 (917)
....+....|||++++++..... ..+.+++..+.
T Consensus 413 ~~~~~~~~~~~S~dg~~~~~~~s~~~~p~~~l~~~~~~ 450 (740)
T 4a5s_A 413 PERCQYYSVSFSKEAKYYQLRCSGPGLPLYTLHSSVND 450 (740)
T ss_dssp TTTBCBEEEEECTTSSEEEEEECSBSSCEEEEEETTTT
T ss_pred CCCCceEEEEECCCCCEEEEEeCCCCCCEEEEEECCCC
Confidence 23568899999999987755433 46778887643
No 157
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.79 E-value=1.8e-16 Score=176.95 Aligned_cols=293 Identities=10% Similarity=0.072 Sum_probs=196.0
Q ss_pred CCcEEEEEe----cCCceEEEecc--CCceeeeeeccccceEEEEEeCCCCEEEEEecc----cEEEEEEecc--Cee--
Q psy3053 591 EGISVASVG----RDAMLKIHSLK--TGRQERSAVLSSMTLSSLCILPDNCTMLVGCWD----SCVVIYDVEC--GRI-- 656 (917)
Q Consensus 591 dg~~Lasgs----~Dg~I~IWd~~--t~~~~~~~~~~~~~V~sl~~spd~~~Lasgs~D----g~I~Iwdl~t--g~~-- 656 (917)
....++.|+ .++.|.+|.++ +++.......+......++|+||+++|++++.+ +.|.+|+++. ++.
T Consensus 12 ~~~~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~ 91 (361)
T 3scy_A 12 SELTMLVGTYTSGNSKGIYTFRFNEETGESLPLSDAEVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHL 91 (361)
T ss_dssp GEEEEEEEECCSSSCCEEEEEEEETTTCCEEEEEEEECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEE
T ss_pred CceEEEEEeccCCCCCCEEEEEEeCCCCCEEEeecccCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEE
Confidence 334555554 45688998774 454433322256667889999999999999886 7999999876 443
Q ss_pred eEEeccCCCceeEEEecCCCCEEEEEE-CCCeEEEEeCCCCCCCccCCcceeee--------ccCCCceEEEEEeCCCCE
Q psy3053 657 VTELAGHEDAISCVAWDEKRKRLISGS-WDCTVRVWNTGASWSHMKPSKSLVSQ--------LDLDNRIKCLAISKDNNQ 727 (917)
Q Consensus 657 i~~l~~H~~~Vt~l~~spd~~~L~Sgs-~DgtI~vWdl~~~~~~~~~~~~~~~~--------~~h~~~V~~l~~spdg~~ 727 (917)
+.....+......+++ ++++|++++ .+++|.+|++........ ....... ..+...+.+++|+|+|+.
T Consensus 92 ~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~ 168 (361)
T 3scy_A 92 LNTQKTMGADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLP-ASDVIEFKGSGPDKERQTMPHLHCVRITPDGKY 168 (361)
T ss_dssp EEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCS-CSEEEECCCCCSCTTTCSSCCEEEEEECTTSSE
T ss_pred eeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcc-cceeEEccCCCCCccccCCCcceEEEECCCCCE
Confidence 3344445566778888 778877776 578999999875421111 1111111 112334688999999997
Q ss_pred EEEEE-CCCeEEEEECCCCee------e------EEecCCCCCCeEEEEEecCCCEEEEEe-CCCeEEEEECCCCeEEEE
Q psy3053 728 LAVGT-EAGELIIWSLENHLM------T------QQLSDDINASVNGVLFSEDGCRVLSCG-NNCMLNVYDLTTGMQVCN 793 (917)
Q Consensus 728 Lasgs-~dG~I~iwDl~~~~~------~------~~l~~~h~~~V~~v~fspdg~~L~s~s-~Dg~I~iwDl~tg~~i~~ 793 (917)
+++++ .++.|.+|++..... + ..........+.+++|+|+|+++++++ .++.|.+||+.++.....
T Consensus 169 l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~ 248 (361)
T 3scy_A 169 LLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEI 248 (361)
T ss_dssp EEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEE
T ss_pred EEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEe
Confidence 76655 478999998875431 1 122224556788999999999888777 689999999987755322
Q ss_pred --eec----CCceEEEEEeCCCE-EEEEeC--CCeEEEEECC--CCE--EEEEEecCCCceE--EEeecCCEEEEEe-CC
Q psy3053 794 --KVF----EEKLLCLSWAGEEK-VILGGA--LGMVYLVDLI--QVQ--LLKQVRAHKDAVL--SLHFDNCTMLVGC-WD 857 (917)
Q Consensus 794 --~~~----~~~i~~l~~s~~~~-lv~gs~--dG~I~vwdl~--~~~--~i~~l~~h~~~V~--sis~dg~~Lasgs-~D 857 (917)
... .....+++|+|++. ++++.. ++.|.+|++. +++ .+..+.. ...+. +++|+|++|++++ .+
T Consensus 249 ~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g~~~~~~~~spdg~~l~~~~~~~ 327 (361)
T 3scy_A 249 QTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT-GIHPRNFIITPNGKYLLVACRDT 327 (361)
T ss_dssp EEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC-SSCCCEEEECTTSCEEEEEETTT
T ss_pred EEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC-CCCCceEEECCCCCEEEEEECCC
Confidence 221 23467999999886 445554 4899999985 444 4445544 33344 4478999988887 67
Q ss_pred CeEEEEE--CcCCeEEEEe-cCCCCCEEEEEEc
Q psy3053 858 SCVVIYD--VECGRIVTEL-AGHEDAISCVAWD 887 (917)
Q Consensus 858 G~I~Iwd--l~tg~~l~~l-~~h~~~V~slafS 887 (917)
+.|.+|+ ..+++..... ..+...+.|++|.
T Consensus 328 ~~v~v~~~d~~~g~~~~~~~~~~~~~p~~v~~~ 360 (361)
T 3scy_A 328 NVIQIFERDQATGLLTDIKKDIKVDKPVCLKFV 360 (361)
T ss_dssp TEEEEEEECTTTCCEEECSCCEECSSEEEEEEE
T ss_pred CCEEEEEEECCCCcEeecceeeeCCCCeEEEEc
Confidence 8999965 4577765543 2244578888886
No 158
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.78 E-value=1.1e-16 Score=176.74 Aligned_cols=247 Identities=12% Similarity=0.044 Sum_probs=190.1
Q ss_pred ccccCCccccceeeeccCCcceEEEEEeCCCcEEEEE-ecCCceEEEeccCCceeeeeeccccc---------eEEEEEe
Q psy3053 562 NSWCDKSILEPLHFCHSHKEAITAVAICGEGISVASV-GRDAMLKIHSLKTGRQERSAVLSSMT---------LSSLCIL 631 (917)
Q Consensus 562 ~~w~~~~~l~~~~~l~~H~~~Vtsv~fSpdg~~Lasg-s~Dg~I~IWd~~t~~~~~~~~~~~~~---------V~sl~~s 631 (917)
.+|+..+. +....+.. ...+.+++++|+|+.++.+ ..++.|.+||..+++....+..+... +.+++|+
T Consensus 72 ~~~d~~~~-~~~~~~~~-~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 149 (353)
T 3vgz_A 72 YRLDPVTL-EVTQAIHN-DLKPFGATINNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVAD 149 (353)
T ss_dssp EEECTTTC-CEEEEEEE-SSCCCSEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEE
T ss_pred EEEcCCCC-eEEEEEec-CCCcceEEECCCCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEEC
Confidence 35554432 34444433 3457889999999966554 55799999999999988777664322 6789999
Q ss_pred CCCCEEEEEe--cccEEEEEEeccCeeeEEeccCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceee-
Q psy3053 632 PDNCTMLVGC--WDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVS- 708 (917)
Q Consensus 632 pd~~~Lasgs--~Dg~I~Iwdl~tg~~i~~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~- 708 (917)
|+++.+++++ .++.|.+||..+++.+..+..+...+.+++|+|+++.+++++.++.|.+||..++... .....
T Consensus 150 ~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~----~~~~~~ 225 (353)
T 3vgz_A 150 DATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKIL----SRKKLL 225 (353)
T ss_dssp TTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEE----EEEECC
T ss_pred CCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEE----EEEEcC
Confidence 9999888776 4789999999999999888867777899999999999999999999999998876210 00000
Q ss_pred eccCCCceEEEEEeCCCCEEEEEECC-CeEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEEe-CCCeEEEEECC
Q psy3053 709 QLDLDNRIKCLAISKDNNQLAVGTEA-GELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCG-NNCMLNVYDLT 786 (917)
Q Consensus 709 ~~~h~~~V~~l~~spdg~~Lasgs~d-G~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s-~Dg~I~iwDl~ 786 (917)
..++...+.+++|+|+++.+++++.+ +.|.+||+.+++.+..+..+. ..+++|+|+|+.+++++ .++.|.+||..
T Consensus 226 ~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~---~~~~~~s~dg~~l~v~~~~~~~v~~~d~~ 302 (353)
T 3vgz_A 226 DDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAPE---SLAVLFNPARNEAYVTHRQAGKVSVIDAK 302 (353)
T ss_dssp CSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEECSS---CCCEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred CCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCC---CceEEECCCCCEEEEEECCCCeEEEEECC
Confidence 11245568889999999987776654 999999999999888776322 25699999999766665 68999999999
Q ss_pred CCeEEEEeecCCceEEEEEeCCCE-EEEEeCC
Q psy3053 787 TGMQVCNKVFEEKLLCLSWAGEEK-VILGGAL 817 (917)
Q Consensus 787 tg~~i~~~~~~~~i~~l~~s~~~~-lv~gs~d 817 (917)
+++.+........+.++++++++. ++++..+
T Consensus 303 ~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~ 334 (353)
T 3vgz_A 303 SYKVVKTFDTPTHPNSLALSADGKTLYVSVKQ 334 (353)
T ss_dssp TTEEEEEEECCSEEEEEEECTTSCEEEEEEEC
T ss_pred CCeEEEEEecCCCCCeEEEcCCCCEEEEEEcc
Confidence 999988888888899999998875 5555444
No 159
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.77 E-value=5.6e-18 Score=195.25 Aligned_cols=200 Identities=17% Similarity=0.145 Sum_probs=156.2
Q ss_pred CcceEEEEEeCCCcEEEEEecCCceEEEeccCCc----------eee-----eeeccccceEEEEEeCCCCEEE----EE
Q psy3053 580 KEAITAVAICGEGISVASVGRDAMLKIHSLKTGR----------QER-----SAVLSSMTLSSLCILPDNCTML----VG 640 (917)
Q Consensus 580 ~~~Vtsv~fSpdg~~Lasgs~Dg~I~IWd~~t~~----------~~~-----~~~~~~~~V~sl~~spd~~~La----sg 640 (917)
...+..+++++++.++++++.|+ +++|+..... ... ....+...|.+++|+|++++|+ +|
T Consensus 36 ~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~sg 114 (434)
T 2oit_A 36 KERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMSS 114 (434)
T ss_dssp CSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEEET
T ss_pred CCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEecc
Confidence 44688999999999999999888 8898764211 000 0112345699999999999999 78
Q ss_pred ecccEEEEEEeccC--------e---eeEEeccCCCceeEEEecCC-CCEEEEEECCCeEEEEeCCCCCCCccCCcceee
Q psy3053 641 CWDSCVVIYDVECG--------R---IVTELAGHEDAISCVAWDEK-RKRLISGSWDCTVRVWNTGASWSHMKPSKSLVS 708 (917)
Q Consensus 641 s~Dg~I~Iwdl~tg--------~---~i~~l~~H~~~Vt~l~~spd-~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~ 708 (917)
+.|+.|++||+.++ + ....+.+|.+.|++++|+|+ +.+|++++.||+|++||++++ .....
T Consensus 115 s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~-------~~~~~ 187 (434)
T 2oit_A 115 EYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTET-------VKVCA 187 (434)
T ss_dssp TTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSS-------EEEEE
T ss_pred CCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCC-------cceee
Confidence 88999999999765 1 24566789999999999997 889999999999999999765 22334
Q ss_pred eccCCCceEEEEEeCCCCEEEEEECCCeEEEEECCCCeeeEEecC------CCCCCeEEEEEecCCCEEEEEe-CCC---
Q psy3053 709 QLDLDNRIKCLAISKDNNQLAVGTEAGELIIWSLENHLMTQQLSD------DINASVNGVLFSEDGCRVLSCG-NNC--- 778 (917)
Q Consensus 709 ~~~h~~~V~~l~~spdg~~Lasgs~dG~I~iwDl~~~~~~~~l~~------~h~~~V~~v~fspdg~~L~s~s-~Dg--- 778 (917)
..+|...|.+++|+|+|++|++|+.||.|++||++ ++....+.. .|...|.+++|++++.++++.+ .+|
T Consensus 188 ~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~ 266 (434)
T 2oit_A 188 TLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLE 266 (434)
T ss_dssp EECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSS
T ss_pred ccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccC
Confidence 45678899999999999999999999999999998 555544431 1233899999999987776543 443
Q ss_pred ---eEEEEECCCC
Q psy3053 779 ---MLNVYDLTTG 788 (917)
Q Consensus 779 ---~I~iwDl~tg 788 (917)
.+++|++.+.
T Consensus 267 ~~~~v~i~~l~~~ 279 (434)
T 2oit_A 267 TSPDVVMALLPKK 279 (434)
T ss_dssp SCCEEEEEECCCT
T ss_pred CCCceEEEEeccC
Confidence 3899999754
No 160
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.77 E-value=1.2e-16 Score=177.26 Aligned_cols=250 Identities=11% Similarity=0.090 Sum_probs=170.5
Q ss_pred ccCCcceEEEEEeCCCcEEEEEec---CCceEEEeccCCce--eeeeeccccceEEEEEeCCCCEEEEEe-cccEEEEEE
Q psy3053 577 HSHKEAITAVAICGEGISVASVGR---DAMLKIHSLKTGRQ--ERSAVLSSMTLSSLCILPDNCTMLVGC-WDSCVVIYD 650 (917)
Q Consensus 577 ~~H~~~Vtsv~fSpdg~~Lasgs~---Dg~I~IWd~~t~~~--~~~~~~~~~~V~sl~~spd~~~Lasgs-~Dg~I~Iwd 650 (917)
..+...+..++|+|||+ |++++. ++.|.+|++.+++. +..+..+...+..++|+||+++|++++ .++.|.+|+
T Consensus 36 ~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~ 114 (347)
T 3hfq_A 36 LAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMK 114 (347)
T ss_dssp EEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred eeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEE
Confidence 34557788899999999 665554 68999999987653 344445667788999999999888888 689999999
Q ss_pred ec-cCe--eeEEecc---------CCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceee-eccCCCceE
Q psy3053 651 VE-CGR--IVTELAG---------HEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVS-QLDLDNRIK 717 (917)
Q Consensus 651 l~-tg~--~i~~l~~---------H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~-~~~h~~~V~ 717 (917)
+. ++. .+..+.. +...+.+++|+|+++.+++...++.|.+|++..... . ..... .......+.
T Consensus 115 ~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~-~---~~~~~~~~~~g~~p~ 190 (347)
T 3hfq_A 115 IAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQ-L---SEQSVLTMEAGFGPR 190 (347)
T ss_dssp ECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSC-E---EEEEEEECCTTCCEE
T ss_pred eCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCc-E---EEeeeEEcCCCCCCc
Confidence 96 332 2333321 123488999999999666666788999999973210 0 01111 122344678
Q ss_pred EEEEeCCCCEEEE-EECCCeEEEEECCC--Cee--eEEecCCC-----CCCeEEEEEecCCCEEE-EEeCCCeEEEEECC
Q psy3053 718 CLAISKDNNQLAV-GTEAGELIIWSLEN--HLM--TQQLSDDI-----NASVNGVLFSEDGCRVL-SCGNNCMLNVYDLT 786 (917)
Q Consensus 718 ~l~~spdg~~Las-gs~dG~I~iwDl~~--~~~--~~~l~~~h-----~~~V~~v~fspdg~~L~-s~s~Dg~I~iwDl~ 786 (917)
.++|+|+|+++++ +..++.+.+|++.. ++. ...+.... ...+..++|+|||++|+ ++..++.|.+|++.
T Consensus 191 ~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~ 270 (347)
T 3hfq_A 191 HLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVT 270 (347)
T ss_dssp EEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEEC
T ss_pred eEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEEC
Confidence 8999999996655 55678999999874 543 22222111 14588999999999875 55568999999986
Q ss_pred C-C--eEEEEeec-CCceEEEEEeCCCE-EEEEeC-CCeEEEE--ECCCCEEE
Q psy3053 787 T-G--MQVCNKVF-EEKLLCLSWAGEEK-VILGGA-LGMVYLV--DLIQVQLL 831 (917)
Q Consensus 787 t-g--~~i~~~~~-~~~i~~l~~s~~~~-lv~gs~-dG~I~vw--dl~~~~~i 831 (917)
. + ..+..... ...+.+++|+|++. +++++. ++.|.+| |..+++..
T Consensus 271 ~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d~~tg~l~ 323 (347)
T 3hfq_A 271 ADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLYARDLTSGKLS 323 (347)
T ss_dssp GGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEE
T ss_pred CCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEeCCCCeEE
Confidence 2 2 33333333 34577888888764 555554 4788888 44455543
No 161
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.77 E-value=3.3e-17 Score=198.49 Aligned_cols=301 Identities=14% Similarity=0.073 Sum_probs=207.1
Q ss_pred eeeccCCcceEEEEEeCCCcEEEEE--ecCCceEEEeccCCceeeeeeccccceE---------EEEEe--CCCCE-EEE
Q psy3053 574 HFCHSHKEAITAVAICGEGISVASV--GRDAMLKIHSLKTGRQERSAVLSSMTLS---------SLCIL--PDNCT-MLV 639 (917)
Q Consensus 574 ~~l~~H~~~Vtsv~fSpdg~~Lasg--s~Dg~I~IWd~~t~~~~~~~~~~~~~V~---------sl~~s--pd~~~-Las 639 (917)
..+.+|...|..+++++++-.+++. +.++...||....+...+.+..+...+. ...|+ |||+. |+.
T Consensus 17 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~ 96 (662)
T 3azo_A 17 ALVASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVF 96 (662)
T ss_dssp HHHHHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEE
T ss_pred HHHhhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCcceeCCCCccccccccccCCccceeeeecCCCeEEEE
Confidence 3467899999999999887666666 5588899999655555556666655555 56566 99998 776
Q ss_pred Eec-ccEEEEEEec--cCeeeEEecc-----CCCceeEEEecCCCCEEEEEECC----------CeEEEEeCCCCCCCcc
Q psy3053 640 GCW-DSCVVIYDVE--CGRIVTELAG-----HEDAISCVAWDEKRKRLISGSWD----------CTVRVWNTGASWSHMK 701 (917)
Q Consensus 640 gs~-Dg~I~Iwdl~--tg~~i~~l~~-----H~~~Vt~l~~spd~~~L~Sgs~D----------gtI~vWdl~~~~~~~~ 701 (917)
++. +..|+++++. ++.....+.. |...+.+++|+|||+.|++++.| ..|.+||+.+....
T Consensus 97 ~~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-- 174 (662)
T 3azo_A 97 THFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAA-- 174 (662)
T ss_dssp EBTTTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTT--
T ss_pred EECCCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccc--
Confidence 654 5566666665 2033455555 67789999999999999999877 58999998762000
Q ss_pred CCcceeeec-cCCCceEEEEEeCCCCEEEEEECC--------CeEEEEECC-CC--eeeEEecCCCCCCeEEEEEecCCC
Q psy3053 702 PSKSLVSQL-DLDNRIKCLAISKDNNQLAVGTEA--------GELIIWSLE-NH--LMTQQLSDDINASVNGVLFSEDGC 769 (917)
Q Consensus 702 ~~~~~~~~~-~h~~~V~~l~~spdg~~Lasgs~d--------G~I~iwDl~-~~--~~~~~l~~~h~~~V~~v~fspdg~ 769 (917)
......... .+...+..++|+|||+.|+.++.+ ..|.+||+. ++ .....+...+...+..++|+|||+
T Consensus 175 ~~~~~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~ 254 (662)
T 3azo_A 175 DRSAVRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGS 254 (662)
T ss_dssp CGGGSEESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSC
T ss_pred cCCceeEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCe
Confidence 000122233 445678889999999999987755 379999998 56 233344435578899999999999
Q ss_pred EEEEEeCCC--eEEEEECCCCeEEEEeecCCc---------eEEEEEeCCCEE-EEEeCCCeEEEE--ECCCCEEEEEEe
Q psy3053 770 RVLSCGNNC--MLNVYDLTTGMQVCNKVFEEK---------LLCLSWAGEEKV-ILGGALGMVYLV--DLIQVQLLKQVR 835 (917)
Q Consensus 770 ~L~s~s~Dg--~I~iwDl~tg~~i~~~~~~~~---------i~~l~~s~~~~l-v~gs~dG~I~vw--dl~~~~~i~~l~ 835 (917)
++++++.++ .|.+||+.+++.......... +.++++++++.+ ++++. +.+.+| |+.+++ +..+.
T Consensus 255 l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~~-~~~l~ 332 (662)
T 3azo_A 255 LIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILDPESGE-LVDAA 332 (662)
T ss_dssp EEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEETTTTE-EEECC
T ss_pred EEEEECCCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEEECCCCc-EEEec
Confidence 877887788 677777767765543332221 456788766554 45555 888888 666665 67778
Q ss_pred cCCCceEEE-eecCCEEE--EEeCCC--eEEEEECcCCeEEEEecCCC
Q psy3053 836 AHKDAVLSL-HFDNCTML--VGCWDS--CVVIYDVECGRIVTELAGHE 878 (917)
Q Consensus 836 ~h~~~V~si-s~dg~~La--sgs~DG--~I~Iwdl~tg~~l~~l~~h~ 878 (917)
.|...+.++ +++++.++ +++.+. .|.++|+.+++.......|.
T Consensus 333 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~l~~~~~ 380 (662)
T 3azo_A 333 GPWTEWAATLTVSGTRAVGVAASPRTAYEVVELDTVTGRARTIGARHT 380 (662)
T ss_dssp SSCCEEEEEEEEETTEEEEEEEETTEEEEEEEEETTTCCEEEEESCCC
T ss_pred CCCCeEEEEEecCCCEEEEEEcCCCCCCEEEEEECCCCceEEeecCCc
Confidence 888888888 88877544 334443 56666777777655444443
No 162
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.77 E-value=5.5e-17 Score=186.96 Aligned_cols=217 Identities=14% Similarity=0.075 Sum_probs=161.6
Q ss_pred CceEEEeccCCceeeeeeccccceEEEEEeCCCCEEEEEecccEEEEEEeccCe----------eeE-----EeccCCCc
Q psy3053 602 AMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTMLVGCWDSCVVIYDVECGR----------IVT-----ELAGHEDA 666 (917)
Q Consensus 602 g~I~IWd~~t~~~~~~~~~~~~~V~sl~~spd~~~Lasgs~Dg~I~Iwdl~tg~----------~i~-----~l~~H~~~ 666 (917)
+.+++|+.... .....+..+++++++.++++|+.|+ +++|+..... ... ....|...
T Consensus 23 ~~vri~~~~~~-------~~~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (434)
T 2oit_A 23 KKVRIFDSPEE-------LPKERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFP 94 (434)
T ss_dssp CEEECSCCCSS-------CCCSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSC
T ss_pred eeEEecCCccc-------cCCCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCc
Confidence 45777764311 2234578899999999999999888 8898764210 010 11235678
Q ss_pred eeEEEecCCCCEEE----EEECCCeEEEEeCCCCCCC----ccCCcceeeeccCCCceEEEEEeCC-CCEEEEEECCCeE
Q psy3053 667 ISCVAWDEKRKRLI----SGSWDCTVRVWNTGASWSH----MKPSKSLVSQLDLDNRIKCLAISKD-NNQLAVGTEAGEL 737 (917)
Q Consensus 667 Vt~l~~spd~~~L~----Sgs~DgtI~vWdl~~~~~~----~~~~~~~~~~~~h~~~V~~l~~spd-g~~Lasgs~dG~I 737 (917)
|++++|+|++++|+ +|+.|++|++||+.+.... ...........+|...|.+++|+|+ +.++++|+.||+|
T Consensus 95 v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v 174 (434)
T 2oit_A 95 IHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSI 174 (434)
T ss_dssp EEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCE
T ss_pred ccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeE
Confidence 99999999999999 7889999999998653100 0111123334568899999999998 7899999999999
Q ss_pred EEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeEEEEeec--------CCceEEEEEeCCC
Q psy3053 738 IIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCNKVF--------EEKLLCLSWAGEE 809 (917)
Q Consensus 738 ~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~tg~~i~~~~~--------~~~i~~l~~s~~~ 809 (917)
++||++++....... +|...|.+++|+|+|++|++|+.||.|++||.+ ++....... ...+.+++|++++
T Consensus 175 ~iwD~~~~~~~~~~~-~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~ 252 (434)
T 2oit_A 175 AVLQVTETVKVCATL-PSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTY 252 (434)
T ss_dssp EEEEESSSEEEEEEE-CGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETT
T ss_pred EEEEcCCCcceeecc-CCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCc
Confidence 999999987665555 678899999999999999999999999999998 544443321 1268999999887
Q ss_pred EEEEEe--CCC------eEEEEECCCC
Q psy3053 810 KVILGG--ALG------MVYLVDLIQV 828 (917)
Q Consensus 810 ~lv~gs--~dG------~I~vwdl~~~ 828 (917)
.++++. .+| .+++|++...
T Consensus 253 ~~l~~~~~~dg~~~~~~~v~i~~l~~~ 279 (434)
T 2oit_A 253 VFAIVYAAADGTLETSPDVVMALLPKK 279 (434)
T ss_dssp EEEEEEEETTCCSSSCCEEEEEECCCT
T ss_pred eEEEEEccCCCccCCCCceEEEEeccC
Confidence 766433 332 3899999764
No 163
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.77 E-value=3.5e-18 Score=209.24 Aligned_cols=270 Identities=13% Similarity=0.073 Sum_probs=197.2
Q ss_pred EEEEeCCCCEEEEEecccEEEEEEeccCeeeEEeccCCC---ceeEEEecCCCCEEEEEEC---------CCeEEEEeCC
Q psy3053 627 SLCILPDNCTMLVGCWDSCVVIYDVECGRIVTELAGHED---AISCVAWDEKRKRLISGSW---------DCTVRVWNTG 694 (917)
Q Consensus 627 sl~~spd~~~Lasgs~Dg~I~Iwdl~tg~~i~~l~~H~~---~Vt~l~~spd~~~L~Sgs~---------DgtI~vWdl~ 694 (917)
+++|+||++++++ +.|++|++||+.+++....+.+|.. .+.+++|||||++|++++. |++|.+||+.
T Consensus 20 ~~~~s~dg~~~~~-~~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~ 98 (719)
T 1z68_A 20 FPNWISGQEYLHQ-SADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLS 98 (719)
T ss_dssp CCEESSSSEEEEE-CTTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETT
T ss_pred ccEECCCCeEEEE-cCCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECC
Confidence 6789999965554 4699999999999998877776654 4899999999999999876 7899999998
Q ss_pred CCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEEEECCCeEEEEECCCCeeeEEecCCCCCCe---------------
Q psy3053 695 ASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGELIIWSLENHLMTQQLSDDINASV--------------- 759 (917)
Q Consensus 695 ~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~dG~I~iwDl~~~~~~~~l~~~h~~~V--------------- 759 (917)
++... ........+.+++|||||+.|+++. ++.|++||+.+++.......++...+
T Consensus 99 ~g~~~--------~~~~l~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~ 169 (719)
T 1z68_A 99 NGEFV--------RGNELPRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLA 169 (719)
T ss_dssp TTEEC--------CSSCCCSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTC
T ss_pred CCccc--------cceecCcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeeccc
Confidence 76210 0011124688999999999999986 78999999998877654433333322
Q ss_pred --EEEEEecCCCEEEEEeCCC----------------------------------eEEEEECCCCeEE--EEe-------
Q psy3053 760 --NGVLFSEDGCRVLSCGNNC----------------------------------MLNVYDLTTGMQV--CNK------- 794 (917)
Q Consensus 760 --~~v~fspdg~~L~s~s~Dg----------------------------------~I~iwDl~tg~~i--~~~------- 794 (917)
.+++|||||+.|++++.|. .|++||+.+++.. ...
T Consensus 170 ~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~ 249 (719)
T 1z68_A 170 TKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIA 249 (719)
T ss_dssp SSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHH
T ss_pred CcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCC
Confidence 4899999999999987652 7889999887642 111
Q ss_pred ecCCceEEEEEeCCCEEEEEeC-C----CeEEEEE----CCCCEEEEEE----ecCCCceE-------EEeecCCEEEE-
Q psy3053 795 VFEEKLLCLSWAGEEKVILGGA-L----GMVYLVD----LIQVQLLKQV----RAHKDAVL-------SLHFDNCTMLV- 853 (917)
Q Consensus 795 ~~~~~i~~l~~s~~~~lv~gs~-d----G~I~vwd----l~~~~~i~~l----~~h~~~V~-------sis~dg~~Las- 853 (917)
.+...+.+++|+|++.+++... . ..|.+|| +.+++....+ .+|...+. ..++||+.++.
T Consensus 250 ~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~ 329 (719)
T 1z68_A 250 SSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKI 329 (719)
T ss_dssp TSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEE
T ss_pred CCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCCCCeEEEE
Confidence 1344688999999988765522 2 3588999 8777655444 35555443 45789986554
Q ss_pred -EeCCC--eEEEEECcCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCC-----CcEEEEecC
Q psy3053 854 -GCWDS--CVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGNLV-----GAPKLYATE 908 (917)
Q Consensus 854 -gs~DG--~I~Iwdl~tg~~l~~l~~h~~~V~slafSpdg~~LaSgs~D-----G~V~IWdl~ 908 (917)
+..+| .|.+||+.+++ ...+..+...|..+.++ +++.|+..+.+ +.+++|.++
T Consensus 330 ~~~~~g~~~l~~~~~~~~~-~~~lt~~~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~ 390 (719)
T 1z68_A 330 FSDKDGYKHIHYIKDTVEN-AIQITSGKWEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRIS 390 (719)
T ss_dssp EECTTSCEEEEEESSCSTT-CEECSCSSSCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEE
T ss_pred EEccCCceEEEEEECCCCc-eEecccCceEEEEEEEE-eCCEEEEEEecCCCCCceEEEEEEe
Confidence 44555 57777877766 45566666678888888 88888877665 889999875
No 164
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.76 E-value=4.7e-16 Score=173.48 Aligned_cols=269 Identities=13% Similarity=0.084 Sum_probs=183.3
Q ss_pred CCEEEEEe----cccEEEEEEec--cCeeeEEeccCCCceeEEEecCCCCEEEEEECC----CeEEEEeCCCCCCCccCC
Q psy3053 634 NCTMLVGC----WDSCVVIYDVE--CGRIVTELAGHEDAISCVAWDEKRKRLISGSWD----CTVRVWNTGASWSHMKPS 703 (917)
Q Consensus 634 ~~~Lasgs----~Dg~I~Iwdl~--tg~~i~~l~~H~~~Vt~l~~spd~~~L~Sgs~D----gtI~vWdl~~~~~~~~~~ 703 (917)
...+++|+ .++.|++|.++ +++.......+...+..++|+|++++|++++.+ +.|.+|++.......
T Consensus 13 ~~~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~--- 89 (361)
T 3scy_A 13 ELTMLVGTYTSGNSKGIYTFRFNEETGESLPLSDAEVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTL--- 89 (361)
T ss_dssp EEEEEEEECCSSSCCEEEEEEEETTTCCEEEEEEEECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEE---
T ss_pred ceEEEEEeccCCCCCCEEEEEEeCCCCCEEEeecccCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcE---
Confidence 34555664 35689999875 455433222277788899999999999999986 799999986531110
Q ss_pred cceeeeccCCCceEEEEEeCCCCEEEEEE-CCCeEEEEECCCCeeeEEe----cC---------CCCCCeEEEEEecCCC
Q psy3053 704 KSLVSQLDLDNRIKCLAISKDNNQLAVGT-EAGELIIWSLENHLMTQQL----SD---------DINASVNGVLFSEDGC 769 (917)
Q Consensus 704 ~~~~~~~~h~~~V~~l~~spdg~~Lasgs-~dG~I~iwDl~~~~~~~~l----~~---------~h~~~V~~v~fspdg~ 769 (917)
........+...+..+++ +++.+++++ .++.+.+|++.....+... .. .+...+.+++|+|+|+
T Consensus 90 ~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~ 167 (361)
T 3scy_A 90 HLLNTQKTMGADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGK 167 (361)
T ss_dssp EEEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSS
T ss_pred EEeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCC
Confidence 112222234556777777 788777766 5789999999754322211 10 1123458899999999
Q ss_pred EEEEEe-CCCeEEEEECCCCe-------E-------EEEeecCCceEEEEEeCCCE-EEEEe-CCCeEEEEECCCCEE--
Q psy3053 770 RVLSCG-NNCMLNVYDLTTGM-------Q-------VCNKVFEEKLLCLSWAGEEK-VILGG-ALGMVYLVDLIQVQL-- 830 (917)
Q Consensus 770 ~L~s~s-~Dg~I~iwDl~tg~-------~-------i~~~~~~~~i~~l~~s~~~~-lv~gs-~dG~I~vwdl~~~~~-- 830 (917)
++++++ .++.+.+|++.... . .........+..++|+|++. +++++ .++.|.+|++.+++.
T Consensus 168 ~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~ 247 (361)
T 3scy_A 168 YLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDE 247 (361)
T ss_dssp EEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEE
T ss_pred EEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEE
Confidence 776665 47899999886433 1 22233455688999999885 55555 589999999987754
Q ss_pred EEEEec---CCCceEEE--eecCCEEEEEeCC--CeEEEEECc--CCe--EEEEecCCCCCEEEEEEcCCCCEEEEEe-C
Q psy3053 831 LKQVRA---HKDAVLSL--HFDNCTMLVGCWD--SCVVIYDVE--CGR--IVTELAGHEDAISCVAWDEKRKRLISGN-L 898 (917)
Q Consensus 831 i~~l~~---h~~~V~si--s~dg~~Lasgs~D--G~I~Iwdl~--tg~--~l~~l~~h~~~V~slafSpdg~~LaSgs-~ 898 (917)
+..+.. +.....++ +|||++|+++..+ +.|.+|++. +++ .+..+.. ...+.+++|+|||++|++++ .
T Consensus 248 ~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g~~~~~~~~spdg~~l~~~~~~ 326 (361)
T 3scy_A 248 IQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT-GIHPRNFIITPNGKYLLVACRD 326 (361)
T ss_dssp EEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC-SSCCCEEEECTTSCEEEEEETT
T ss_pred eEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC-CCCCceEEECCCCCEEEEEECC
Confidence 333332 22334444 7899998776654 899999985 455 4445554 45678999999999998887 6
Q ss_pred CCcEEEEecC
Q psy3053 899 VGAPKLYATE 908 (917)
Q Consensus 899 DG~V~IWdl~ 908 (917)
++.|.+|+++
T Consensus 327 ~~~v~v~~~d 336 (361)
T 3scy_A 327 TNVIQIFERD 336 (361)
T ss_dssp TTEEEEEEEC
T ss_pred CCCEEEEEEE
Confidence 7899997665
No 165
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.75 E-value=8.6e-16 Score=172.53 Aligned_cols=286 Identities=9% Similarity=0.022 Sum_probs=207.6
Q ss_pred CCcEEEEEe------cCCceEEEeccCCceeeeeeccccceEEEEEeCCCCEEEEEe----------cccEEEEEEeccC
Q psy3053 591 EGISVASVG------RDAMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTMLVGC----------WDSCVVIYDVECG 654 (917)
Q Consensus 591 dg~~Lasgs------~Dg~I~IWd~~t~~~~~~~~~~~~~V~sl~~spd~~~Lasgs----------~Dg~I~Iwdl~tg 654 (917)
++++++++. .|+.|.+||..+++.+..+..+..+ .++++||++++++++ .++.|.+||..++
T Consensus 14 ~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~ 91 (361)
T 2oiz_A 14 QENRIYVMDSVFMHLTESRVHVYDYTNGKFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKL 91 (361)
T ss_dssp GGGEEEEEECCGGGGGGCEEEEEETTTCCEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTC
T ss_pred CCCEEEEECCCCCccccCeEEEEECCCCeEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCC
Confidence 455555543 4789999999999988887776655 899999999999886 3778999999999
Q ss_pred eeeEEeccC------CCceeEEEecCCCCEEEEEEC--CCeEEEEeCCCCCCCccCCcceeee-ccCCCceEEEEEeCCC
Q psy3053 655 RIVTELAGH------EDAISCVAWDEKRKRLISGSW--DCTVRVWNTGASWSHMKPSKSLVSQ-LDLDNRIKCLAISKDN 725 (917)
Q Consensus 655 ~~i~~l~~H------~~~Vt~l~~spd~~~L~Sgs~--DgtI~vWdl~~~~~~~~~~~~~~~~-~~h~~~V~~l~~spdg 725 (917)
+.+..+... ......++++|+|++|++++. +++|.+||+.+. ..... ..... ...+.+.|++
T Consensus 92 ~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~--------~~~~~~i~~~~-~~~v~~~p~~ 162 (361)
T 2oiz_A 92 TFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKG--------DYVEDVTAAAG-CWSVIPQPNR 162 (361)
T ss_dssp CEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTT--------EEEEEEGGGTT-EEEEEECTTS
T ss_pred cEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCC--------cEEEEEecCCC-cceeEEcCCC
Confidence 888877632 345678999999999998874 589999999876 22222 33222 2235667765
Q ss_pred -CEEEEEECCCeEEEEECCC-CeeeEEec-----CCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeE--EEEeec
Q psy3053 726 -NQLAVGTEAGELIIWSLEN-HLMTQQLS-----DDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQ--VCNKVF 796 (917)
Q Consensus 726 -~~Lasgs~dG~I~iwDl~~-~~~~~~l~-----~~h~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~tg~~--i~~~~~ 796 (917)
..+++.+.||.+.+|+... ++...... .....+ ..+.+++++..++..+.++.+.++|+..+.. ......
T Consensus 163 ~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~ 241 (361)
T 2oiz_A 163 PRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDP-IFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSL 241 (361)
T ss_dssp SSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSC-BCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEES
T ss_pred CeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCc-eEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccc
Confidence 6778888999999998865 44432111 111222 2344578888888888899999999875532 222111
Q ss_pred C-----------CceEEEEEeCC-CEEEEEeC-----------CCeEEEEECCCCEEEEEEecCCCceEEE--eecCCEE
Q psy3053 797 E-----------EKLLCLSWAGE-EKVILGGA-----------LGMVYLVDLIQVQLLKQVRAHKDAVLSL--HFDNCTM 851 (917)
Q Consensus 797 ~-----------~~i~~l~~s~~-~~lv~gs~-----------dG~I~vwdl~~~~~i~~l~~h~~~V~si--s~dg~~L 851 (917)
. .....++++++ +.++++.. .+.|.+||+.+++.+.++..+. +.++ ++||++|
T Consensus 242 ~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~--p~~ia~spdg~~l 319 (361)
T 2oiz_A 242 LNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD--ALSMTIDQQRNLM 319 (361)
T ss_dssp CCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT--CCEEEEETTTTEE
T ss_pred cCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC--eeEEEECCCCCEE
Confidence 1 11112567765 45555432 3589999999999999998777 5554 8899999
Q ss_pred EEEeCCCeEEEEECcCC--eEEEEecCCCCCEEEEEEcCCCC
Q psy3053 852 LVGCWDSCVVIYDVECG--RIVTELAGHEDAISCVAWDEKRK 891 (917)
Q Consensus 852 asgs~DG~I~Iwdl~tg--~~l~~l~~h~~~V~slafSpdg~ 891 (917)
++++. ++|.+||..++ +.+..+..+......++++|+|+
T Consensus 320 ~v~n~-~~v~v~D~~t~~l~~~~~i~~~G~~P~~~~~~p~G~ 360 (361)
T 2oiz_A 320 LTLDG-GNVNVYDISQPEPKLLRTIEGAAEASLQVQFHPVGG 360 (361)
T ss_dssp EEECS-SCEEEEECSSSSCEEEEEETTSCSSEEEEEECCCSC
T ss_pred EEeCC-CeEEEEECCCCcceeeEEeccCCCCcEEEEecCCCC
Confidence 98887 99999999999 99999877777889999999985
No 166
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.73 E-value=1.5e-16 Score=178.76 Aligned_cols=277 Identities=10% Similarity=0.029 Sum_probs=187.5
Q ss_pred ceEEEEEeCCCcEEEEEecC---CceEEEeccCCceeeeeeccccceEEEEEeCCCCEEEEEecccEEEEEEeccCeeeE
Q psy3053 582 AITAVAICGEGISVASVGRD---AMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTMLVGCWDSCVVIYDVECGRIVT 658 (917)
Q Consensus 582 ~Vtsv~fSpdg~~Lasgs~D---g~I~IWd~~t~~~~~~~~~~~~~V~sl~~spd~~~Lasgs~Dg~I~Iwdl~tg~~i~ 658 (917)
.+.+++|||||++|+.++.. ..|.+|++.+++.......+......+.|+|||+.|+.++.++.|++|++.+++...
T Consensus 37 ~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~ 116 (396)
T 3c5m_A 37 YFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDERAFFYVKNELNLMKVDLETLEEQV 116 (396)
T ss_dssp CTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTTSSEEEEEETTTEEEEEETTTCCEEE
T ss_pred eeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCCCCEEEEEEcCCcEEEEECCCCCcEE
Confidence 37889999999998877543 367888988876554433333333347899999999999999999999999888766
Q ss_pred EeccCCCceeE-------------------EEecCCCCEEEEE-----ECCCeEEEEeCCCCCCCccCCcceeeeccCCC
Q psy3053 659 ELAGHEDAISC-------------------VAWDEKRKRLISG-----SWDCTVRVWNTGASWSHMKPSKSLVSQLDLDN 714 (917)
Q Consensus 659 ~l~~H~~~Vt~-------------------l~~spd~~~L~Sg-----s~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~ 714 (917)
....+...... ++|+|+++.++.+ ..+..|.+||+.++ .......+..
T Consensus 117 ~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g--------~~~~~~~~~~ 188 (396)
T 3c5m_A 117 IYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETG--------ELEVIHQDTA 188 (396)
T ss_dssp EEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTC--------CEEEEEEESS
T ss_pred EEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCC--------cEEeeccCCc
Confidence 66555443333 3467777766544 35678999998765 2222334566
Q ss_pred ceEEEEEeC-CCCEEEEEECC------CeEEEEECCCCeeeEEecCCC-CCCeEEEEEecCCCEEEEEeCC-----CeEE
Q psy3053 715 RIKCLAISK-DNNQLAVGTEA------GELIIWSLENHLMTQQLSDDI-NASVNGVLFSEDGCRVLSCGNN-----CMLN 781 (917)
Q Consensus 715 ~V~~l~~sp-dg~~Lasgs~d------G~I~iwDl~~~~~~~~l~~~h-~~~V~~v~fspdg~~L~s~s~D-----g~I~ 781 (917)
.+..+.|+| +++.++..+.+ ..|.+||+.+++.. .+.... ...+..++|+|+|+.|+.++.+ +.|+
T Consensus 189 ~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~-~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~ 267 (396)
T 3c5m_A 189 WLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVR-KIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIY 267 (396)
T ss_dssp CEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCE-ESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEE
T ss_pred ccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCcee-EeeccCCCccccceEECCCCCEEEEEecCCCCccceEE
Confidence 789999999 78877776643 36889998766533 333221 3357889999999988877544 4599
Q ss_pred EEECCCCeEEEEeecCCceEEEEEeC-CCEEEEE-e----------------CCCeEEEEECCCCEEEEEEecCCCc---
Q psy3053 782 VYDLTTGMQVCNKVFEEKLLCLSWAG-EEKVILG-G----------------ALGMVYLVDLIQVQLLKQVRAHKDA--- 840 (917)
Q Consensus 782 iwDl~tg~~i~~~~~~~~i~~l~~s~-~~~lv~g-s----------------~dG~I~vwdl~~~~~i~~l~~h~~~--- 840 (917)
+||+.+++......... .. ..|++ ++.+++. + .++.|++||+.+++.. .+..+...
T Consensus 268 ~~d~~~g~~~~l~~~~~-~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~~~~ 344 (396)
T 3c5m_A 268 KANPETLENEEVMVMPP-CS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSAQ-KLCKHSTSWDV 344 (396)
T ss_dssp EECTTTCCEEEEEECCS-EE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBCC-EEEECCCCCCC
T ss_pred EEECCCCCeEEeeeCCC-CC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCceE-EccCCCCcccc
Confidence 99999887654433333 33 78887 7665543 2 3478999999887643 34444331
Q ss_pred --------e--EEEeecCCEEEEEeC-CCe--EEEEECcCCeE
Q psy3053 841 --------V--LSLHFDNCTMLVGCW-DSC--VVIYDVECGRI 870 (917)
Q Consensus 841 --------V--~sis~dg~~Lasgs~-DG~--I~Iwdl~tg~~ 870 (917)
+ .+++++|+.|+.++. ++. |...++.++..
T Consensus 345 ~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~~~~~~~~ 387 (396)
T 3c5m_A 345 LDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIADVPESYK 387 (396)
T ss_dssp BTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEECCTTCC
T ss_pred ccccccCCCCCceEccCCCeEEEEecCCCCceEEEEEEccccc
Confidence 2 345889998887765 454 44445555544
No 167
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.73 E-value=4e-16 Score=175.00 Aligned_cols=271 Identities=10% Similarity=0.070 Sum_probs=182.4
Q ss_pred EEEEEecc--cEEEEEEec--cCeeeEE--ec-cCCCceeEEEecCCCCEEEEEECCCeEEEEeCC-CCCCCccCCccee
Q psy3053 636 TMLVGCWD--SCVVIYDVE--CGRIVTE--LA-GHEDAISCVAWDEKRKRLISGSWDCTVRVWNTG-ASWSHMKPSKSLV 707 (917)
Q Consensus 636 ~Lasgs~D--g~I~Iwdl~--tg~~i~~--l~-~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~-~~~~~~~~~~~~~ 707 (917)
.+++|+.. +.|.+|+++ +|+.... .. +....+..++|+|++++|++++.+ .|.+|++. ++.. ....
T Consensus 4 ~~~vg~~~~~~~i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~-----~~~~ 77 (365)
T 1jof_A 4 HLMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEI-----VHEA 77 (365)
T ss_dssp EEEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEE-----EEEE
T ss_pred EEEEEEccCCCcEEEEEEECCCCCEEEeeEEccCCCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCE-----EEee
Confidence 35556543 568887764 5654322 11 234568899999999999999988 99999986 4310 0111
Q ss_pred eeccCCCceEEEEEeCCCCE--EEEEE-------------CCCeEEEEECC-CCeeeEEec---CCCCCCeEEEEEecCC
Q psy3053 708 SQLDLDNRIKCLAISKDNNQ--LAVGT-------------EAGELIIWSLE-NHLMTQQLS---DDINASVNGVLFSEDG 768 (917)
Q Consensus 708 ~~~~h~~~V~~l~~spdg~~--Lasgs-------------~dG~I~iwDl~-~~~~~~~l~---~~h~~~V~~v~fspdg 768 (917)
.... .+.+.+++++|+|+. +++++ .+|.+.+|++. .++....+. ..+...+.+++|+|||
T Consensus 78 ~~~~-~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG 156 (365)
T 1jof_A 78 SHPI-GGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTE 156 (365)
T ss_dssp EEEC-CSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTS
T ss_pred Eeec-CCCCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCC
Confidence 1111 123566899999994 44543 68999999997 455443332 1245679999999999
Q ss_pred CEEEEEeC-CCeEEEEECC-CCeEE--EEee---cCCceEEEEEeCCCE-EEEEeC-CCeEEEEECC--CCEEE---EEE
Q psy3053 769 CRVLSCGN-NCMLNVYDLT-TGMQV--CNKV---FEEKLLCLSWAGEEK-VILGGA-LGMVYLVDLI--QVQLL---KQV 834 (917)
Q Consensus 769 ~~L~s~s~-Dg~I~iwDl~-tg~~i--~~~~---~~~~i~~l~~s~~~~-lv~gs~-dG~I~vwdl~--~~~~i---~~l 834 (917)
+++++++. ++.|++||+. +++.. .... +...+..++|+|++. +++++. ++.|.+|++. +++.. ..+
T Consensus 157 ~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~ 236 (365)
T 1jof_A 157 TYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSF 236 (365)
T ss_dssp SEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEE
T ss_pred CEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceE
Confidence 98887764 6799999998 77653 2233 245689999999884 555554 6899999765 55542 222
Q ss_pred e---c----CCC------ceE--E-EeecCCEEEEEeCC-C-----eEEEEECc-CCeEEE---EecCCCCCEEEEEEcC
Q psy3053 835 R---A----HKD------AVL--S-LHFDNCTMLVGCWD-S-----CVVIYDVE-CGRIVT---ELAGHEDAISCVAWDE 888 (917)
Q Consensus 835 ~---~----h~~------~V~--s-is~dg~~Lasgs~D-G-----~I~Iwdl~-tg~~l~---~l~~h~~~V~slafSp 888 (917)
. . |.. .+. + ++|||++|++++.+ + +|.+|++. +++... ....+...+..++|+|
T Consensus 237 ~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp 316 (365)
T 1jof_A 237 PLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSP 316 (365)
T ss_dssp ESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEE
T ss_pred EcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecC
Confidence 2 1 121 243 3 56899998876643 2 89999996 676543 2334555567899999
Q ss_pred ---CCCEEEEEeCC-CcEEEEecCcceEE
Q psy3053 889 ---KRKRLISGNLV-GAPKLYATEFYLLY 913 (917)
Q Consensus 889 ---dg~~LaSgs~D-G~V~IWdl~~~ll~ 913 (917)
||++|++++.+ +.|.+|+++...+.
T Consensus 317 ~~~dg~~l~v~~~~~~~v~v~~~~~~~l~ 345 (365)
T 1jof_A 317 CPWSDEWMAITDDQEGWLEIYRWKDEFLH 345 (365)
T ss_dssp CTTCTTEEEEECSSSCEEEEEEEETTEEE
T ss_pred CCcCCCEEEEEEcCCCeEEEEEEchhhCc
Confidence 89999999864 89999999866443
No 168
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.71 E-value=3.2e-16 Score=176.00 Aligned_cols=291 Identities=10% Similarity=0.024 Sum_probs=193.8
Q ss_pred EEeccCCceeeeeeccccc-----eEEEEEeCCCCEEEEEecc---cEEEEEEeccCeeeEEeccCCCceeEEEecCCCC
Q psy3053 606 IHSLKTGRQERSAVLSSMT-----LSSLCILPDNCTMLVGCWD---SCVVIYDVECGRIVTELAGHEDAISCVAWDEKRK 677 (917)
Q Consensus 606 IWd~~t~~~~~~~~~~~~~-----V~sl~~spd~~~Lasgs~D---g~I~Iwdl~tg~~i~~l~~H~~~Vt~l~~spd~~ 677 (917)
..|..++..+..+..+... +.+++|+|||+.|+.+... ..|.+||+.+++......++......+.|+|+|+
T Consensus 14 ~~d~~~g~~~~~l~~~~~~~~~~~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg~ 93 (396)
T 3c5m_A 14 FVDSDTQVKVTRLTPTDIICHRNYFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDER 93 (396)
T ss_dssp EECTTTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTTSS
T ss_pred eecCCCCcceEEEecCCCCccceeeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCCCC
Confidence 3466667666655544332 6778899999998877543 4788999988876554443433344488999999
Q ss_pred EEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEE-------------------EEEeCCCCEEEEE-----EC
Q psy3053 678 RLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKC-------------------LAISKDNNQLAVG-----TE 733 (917)
Q Consensus 678 ~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~-------------------l~~spdg~~Lasg-----s~ 733 (917)
.|+.++.++.|.+||+.++.. ......+...... ++++|+++.++.+ ..
T Consensus 94 ~l~~~~~~~~l~~~d~~~~~~-------~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~ 166 (396)
T 3c5m_A 94 AFFYVKNELNLMKVDLETLEE-------QVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNP 166 (396)
T ss_dssp EEEEEETTTEEEEEETTTCCE-------EEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCC
T ss_pred EEEEEEcCCcEEEEECCCCCc-------EEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCC
Confidence 999999999999999877621 1111111111111 3467777766554 35
Q ss_pred CCeEEEEECCCCeeeEEecCCCCCCeEEEEEec-CCCEEEEEeCC------CeEEEEECCCCeEEEEeec--CCceEEEE
Q psy3053 734 AGELIIWSLENHLMTQQLSDDINASVNGVLFSE-DGCRVLSCGNN------CMLNVYDLTTGMQVCNKVF--EEKLLCLS 804 (917)
Q Consensus 734 dG~I~iwDl~~~~~~~~l~~~h~~~V~~v~fsp-dg~~L~s~s~D------g~I~iwDl~tg~~i~~~~~--~~~i~~l~ 804 (917)
++.|.+||+.+++..... .+...+..+.|+| +|+.|+.++.+ ..|.+||+.++........ ...+..++
T Consensus 167 ~~~l~~~d~~~g~~~~~~--~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~ 244 (396)
T 3c5m_A 167 TCRLIKVDIETGELEVIH--QDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGESCTHEF 244 (396)
T ss_dssp CEEEEEEETTTCCEEEEE--EESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCTTEEEEEEE
T ss_pred cceEEEEECCCCcEEeec--cCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeeccCCCccccceE
Confidence 678999999988765544 3567789999999 88877776643 3688999876654333222 22477789
Q ss_pred EeCCCE-EEEEeCC-----CeEEEEECCCCEEEEEEecCCCceEEEee-cCCEEEEEe----------------CCCeEE
Q psy3053 805 WAGEEK-VILGGAL-----GMVYLVDLIQVQLLKQVRAHKDAVLSLHF-DNCTMLVGC----------------WDSCVV 861 (917)
Q Consensus 805 ~s~~~~-lv~gs~d-----G~I~vwdl~~~~~i~~l~~h~~~V~sis~-dg~~Lasgs----------------~DG~I~ 861 (917)
|+|++. ++.++.+ +.|++||+.+++........ ......++ +|+.+++++ .++.|+
T Consensus 245 ~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~-~~~~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~ 323 (396)
T 3c5m_A 245 WIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMVMP-PCSHLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLY 323 (396)
T ss_dssp ECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEECC-SEEEEEECSSSSEEEEEECCC----------CCCCCCEEE
T ss_pred ECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeeeCC-CCCCCccCCCCceEEEecCCcceeeccccccccCCCCcEE
Confidence 998875 5555433 45999999888654332221 11145578 999888765 347899
Q ss_pred EEECcCCeEEEEecCCCC-----------CEEEEEEcCCCCEEEEEeC-CCcEEEEec
Q psy3053 862 IYDVECGRIVTELAGHED-----------AISCVAWDEKRKRLISGNL-VGAPKLYAT 907 (917)
Q Consensus 862 Iwdl~tg~~l~~l~~h~~-----------~V~slafSpdg~~LaSgs~-DG~V~IWdl 907 (917)
+||+.+++.. .+..+.. .+..++|+|||+.|+.++. ++...+|.+
T Consensus 324 ~~d~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~ 380 (396)
T 3c5m_A 324 VLNTKAKSAQ-KLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIA 380 (396)
T ss_dssp EEETTTTBCC-EEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEE
T ss_pred EEecccCceE-EccCCCCccccccccccCCCCCceEccCCCeEEEEecCCCCceEEEE
Confidence 9999888753 3444443 2567899999999887764 566556654
No 169
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.69 E-value=1.2e-14 Score=162.82 Aligned_cols=270 Identities=10% Similarity=-0.021 Sum_probs=179.3
Q ss_pred EEEEecC--CceEEEec--cCCceeeeee---ccccceEEEEEeCCCCEEEEEecccEEEEEEec-cCeeeEEeccC-CC
Q psy3053 595 VASVGRD--AMLKIHSL--KTGRQERSAV---LSSMTLSSLCILPDNCTMLVGCWDSCVVIYDVE-CGRIVTELAGH-ED 665 (917)
Q Consensus 595 Lasgs~D--g~I~IWd~--~t~~~~~~~~---~~~~~V~sl~~spd~~~Lasgs~Dg~I~Iwdl~-tg~~i~~l~~H-~~ 665 (917)
++.|+.. +.|.+|++ .+++...... .....+..++++|++++|++++.+ .|.+|++. +++........ .+
T Consensus 5 ~~vg~~~~~~~i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~g 83 (365)
T 1jof_A 5 LMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIGG 83 (365)
T ss_dssp EEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECCS
T ss_pred EEEEEccCCCcEEEEEEECCCCCEEEeeEEccCCCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecCC
Confidence 4455542 45777665 3444322111 122357789999999999999888 99999997 78765433211 12
Q ss_pred ceeEEEecCCCCE--EEEEE-------------CCCeEEEEeCCCCCCCccCCcceeee--ccCCCceEEEEEeCCCCEE
Q psy3053 666 AISCVAWDEKRKR--LISGS-------------WDCTVRVWNTGASWSHMKPSKSLVSQ--LDLDNRIKCLAISKDNNQL 728 (917)
Q Consensus 666 ~Vt~l~~spd~~~--L~Sgs-------------~DgtI~vWdl~~~~~~~~~~~~~~~~--~~h~~~V~~l~~spdg~~L 728 (917)
.+.+++|+|+|++ +++++ .+|++.+|++...... ...... ..+...+.+++|+|+|+++
T Consensus 84 ~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~----~~~~~~~~~~~~~~~~~~~~spdG~~l 159 (365)
T 1jof_A 84 HPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKL----EKNVQNYEYQENTGIHGMVFDPTETYL 159 (365)
T ss_dssp SGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCE----EEEEEEEECCTTCCEEEEEECTTSSEE
T ss_pred CCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcC----cceEeeEEeCCCCcceEEEECCCCCEE
Confidence 3567899999994 45553 6899999998642110 011111 1245679999999999988
Q ss_pred EEEEC-CCeEEEEECC-CCeee--EEecC-CCCCCeEEEEEecCCCEEEEEeC-CCeEEEEECC--CCeEEE---Eee-c
Q psy3053 729 AVGTE-AGELIIWSLE-NHLMT--QQLSD-DINASVNGVLFSEDGCRVLSCGN-NCMLNVYDLT--TGMQVC---NKV-F 796 (917)
Q Consensus 729 asgs~-dG~I~iwDl~-~~~~~--~~l~~-~h~~~V~~v~fspdg~~L~s~s~-Dg~I~iwDl~--tg~~i~---~~~-~ 796 (917)
++++. ++.|.+||+. +++.. ..+.. .+...+..++|+|+|+++++++. ++.+.+|++. +++... ... .
T Consensus 160 ~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~ 239 (365)
T 1jof_A 160 YSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLI 239 (365)
T ss_dssp EEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESS
T ss_pred EEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcC
Confidence 87764 6799999998 67643 22321 13567999999999999988775 6899999764 565421 121 1
Q ss_pred C------C-------ceEEEE-EeCCCE-EEEEeCC-C-----eEEEEECC-CCEEEE---EEecCC--CceEEEee---
Q psy3053 797 E------E-------KLLCLS-WAGEEK-VILGGAL-G-----MVYLVDLI-QVQLLK---QVRAHK--DAVLSLHF--- 846 (917)
Q Consensus 797 ~------~-------~i~~l~-~s~~~~-lv~gs~d-G-----~I~vwdl~-~~~~i~---~l~~h~--~~V~sis~--- 846 (917)
. . .+..++ ++|++. +++++.+ + .|.+|++. +++... ....+. ..-.+++|
T Consensus 240 ~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~ 319 (365)
T 1jof_A 240 PPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPW 319 (365)
T ss_dssp CTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTT
T ss_pred CCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCc
Confidence 1 1 478899 999885 4444432 3 89999996 566543 233232 23345588
Q ss_pred cCCEEEEEeCC-CeEEEEECcCCe
Q psy3053 847 DNCTMLVGCWD-SCVVIYDVECGR 869 (917)
Q Consensus 847 dg~~Lasgs~D-G~I~Iwdl~tg~ 869 (917)
||++|++++.+ +.|.+|+++...
T Consensus 320 dg~~l~v~~~~~~~v~v~~~~~~~ 343 (365)
T 1jof_A 320 SDEWMAITDDQEGWLEIYRWKDEF 343 (365)
T ss_dssp CTTEEEEECSSSCEEEEEEEETTE
T ss_pred CCCEEEEEEcCCCeEEEEEEchhh
Confidence 89999999865 899999987663
No 170
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.68 E-value=1.3e-14 Score=162.88 Aligned_cols=266 Identities=14% Similarity=0.127 Sum_probs=186.9
Q ss_pred CCCEEEEEe------cccEEEEEEeccCeeeEEeccCCCceeEEEecCCCCEEEEEEC----------CCeEEEEeCCCC
Q psy3053 633 DNCTMLVGC------WDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGSW----------DCTVRVWNTGAS 696 (917)
Q Consensus 633 d~~~Lasgs------~Dg~I~Iwdl~tg~~i~~l~~H~~~Vt~l~~spd~~~L~Sgs~----------DgtI~vWdl~~~ 696 (917)
+++++.+.. .|+.|.+||..+++.+..+..+..+ .++++|+++++++++. +++|.+||..+.
T Consensus 14 ~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~ 91 (361)
T 2oiz_A 14 QENRIYVMDSVFMHLTESRVHVYDYTNGKFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKL 91 (361)
T ss_dssp GGGEEEEEECCGGGGGGCEEEEEETTTCCEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTC
T ss_pred CCCEEEEECCCCCccccCeEEEEECCCCeEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCC
Confidence 445555442 4789999999999998888877655 8999999999998873 678999998765
Q ss_pred CCCccCCcceeee---ccCCCceEEEEEeCCCCEEEEEEC--CCeEEEEECCCCeeeEE-ecCCCCCCeEEEEEecCC-C
Q psy3053 697 WSHMKPSKSLVSQ---LDLDNRIKCLAISKDNNQLAVGTE--AGELIIWSLENHLMTQQ-LSDDINASVNGVLFSEDG-C 769 (917)
Q Consensus 697 ~~~~~~~~~~~~~---~~h~~~V~~l~~spdg~~Lasgs~--dG~I~iwDl~~~~~~~~-l~~~h~~~V~~v~fspdg-~ 769 (917)
.. ...+... ..+......++++|+|++++++.. ++.|.+||+.+++.+.. +. .. ....+.+.|++ .
T Consensus 92 ~~----~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~--~~-~~~~v~~~p~~~~ 164 (361)
T 2oiz_A 92 TF----EKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTA--AA-GCWSVIPQPNRPR 164 (361)
T ss_dssp CE----EEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGG--GT-TEEEEEECTTSSS
T ss_pred cE----EEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEec--CC-CcceeEEcCCCCe
Confidence 21 0011000 012345678999999999998874 58999999999998887 65 22 22335677765 6
Q ss_pred EEEEEeCCCeEEEEECCC-CeEEEEee------cCCceEEEEEeC-CCEEEEEeCCCeEEEEECCCCE--EEEEEec---
Q psy3053 770 RVLSCGNNCMLNVYDLTT-GMQVCNKV------FEEKLLCLSWAG-EEKVILGGALGMVYLVDLIQVQ--LLKQVRA--- 836 (917)
Q Consensus 770 ~L~s~s~Dg~I~iwDl~t-g~~i~~~~------~~~~i~~l~~s~-~~~lv~gs~dG~I~vwdl~~~~--~i~~l~~--- 836 (917)
.+++.+.||.+.+|+... ++...... .......+...+ ...++..+.++.+.++|+.... ....+..
T Consensus 165 ~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~ 244 (361)
T 2oiz_A 165 SFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPIFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLND 244 (361)
T ss_dssp EEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCBCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCH
T ss_pred eEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCceEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCc
Confidence 778888999999998865 55442211 111111111122 2256666788999999987543 2232211
Q ss_pred ---------CCCceEEEeecCCEEEEEeC-----------CCeEEEEECcCCeEEEEecCCCCCEEEEEEcCCCCEEEEE
Q psy3053 837 ---------HKDAVLSLHFDNCTMLVGCW-----------DSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISG 896 (917)
Q Consensus 837 ---------h~~~V~sis~dg~~Lasgs~-----------DG~I~Iwdl~tg~~l~~l~~h~~~V~slafSpdg~~LaSg 896 (917)
.......++++++.++++.. ++.|.+||+.+++.+.++..+. +.+++|+|||++|+++
T Consensus 245 ~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~--p~~ia~spdg~~l~v~ 322 (361)
T 2oiz_A 245 EDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD--ALSMTIDQQRNLMLTL 322 (361)
T ss_dssp HHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT--CCEEEEETTTTEEEEE
T ss_pred cccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC--eeEEEECCCCCEEEEe
Confidence 11223567889888777653 3589999999999999998877 8999999999999998
Q ss_pred eCCCcEEEEecCcc
Q psy3053 897 NLVGAPKLYATEFY 910 (917)
Q Consensus 897 s~DG~V~IWdl~~~ 910 (917)
+. +.|.+||.++.
T Consensus 323 n~-~~v~v~D~~t~ 335 (361)
T 2oiz_A 323 DG-GNVNVYDISQP 335 (361)
T ss_dssp CS-SCEEEEECSSS
T ss_pred CC-CeEEEEECCCC
Confidence 87 99999999865
No 171
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.67 E-value=1.6e-13 Score=162.70 Aligned_cols=317 Identities=11% Similarity=0.033 Sum_probs=225.8
Q ss_pred CCCcEEEEEecCCceEEEeccCCceeeeeeccccceEEEEEeCCCCEEEEEecccEEEEEEec--cCeeeEEeccCCCce
Q psy3053 590 GEGISVASVGRDAMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTMLVGCWDSCVVIYDVE--CGRIVTELAGHEDAI 667 (917)
Q Consensus 590 pdg~~Lasgs~Dg~I~IWd~~t~~~~~~~~~~~~~V~sl~~spd~~~Lasgs~Dg~I~Iwdl~--tg~~i~~l~~H~~~V 667 (917)
+.+..+++...++.|.++|..+++.+..+.... .+..+.++||++++++++.|+.|.+||+. +++.+..+.... ..
T Consensus 165 ~~~~~~V~~~~~~~V~viD~~t~~v~~~i~~g~-~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~-~P 242 (567)
T 1qks_A 165 LENLFSVTLRDAGQIALIDGSTYEIKTVLDTGY-AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGS-EA 242 (567)
T ss_dssp GGGEEEEEETTTTEEEEEETTTCCEEEEEECSS-CEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCS-EE
T ss_pred CCceEEEEeCCCCeEEEEECCCCeEEEEEeCCC-CccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCC-CC
Confidence 444566777789999999999999888776543 45689999999999999999999999996 888888776543 46
Q ss_pred eEEEec----CCCCEEEEEEC-CCeEEEEeCCCCCCCccCCcceee-e--cc----C-CCceEEEEEeCCCCEEEE-EEC
Q psy3053 668 SCVAWD----EKRKRLISGSW-DCTVRVWNTGASWSHMKPSKSLVS-Q--LD----L-DNRIKCLAISKDNNQLAV-GTE 733 (917)
Q Consensus 668 t~l~~s----pd~~~L~Sgs~-DgtI~vWdl~~~~~~~~~~~~~~~-~--~~----h-~~~V~~l~~spdg~~Las-gs~ 733 (917)
..++++ |+|+++++++. +++|.++|..+.... ..+.. . .. | ...+..+..++++..++. ...
T Consensus 243 ~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~----~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~ 318 (567)
T 1qks_A 243 RSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPK----KIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKE 318 (567)
T ss_dssp EEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEE----EEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETT
T ss_pred ceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEE----EEEeccccccccccccCCCceEEEEEcCCCCEEEEEecC
Confidence 789999 69998887664 599999997765211 00000 0 00 1 226788888888765544 455
Q ss_pred CCeEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEEe-CCCeEEEEECCCCeEEEEeec-CCce---EEEE-EeC
Q psy3053 734 AGELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCG-NNCMLNVYDLTTGMQVCNKVF-EEKL---LCLS-WAG 807 (917)
Q Consensus 734 dG~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s-~Dg~I~iwDl~tg~~i~~~~~-~~~i---~~l~-~s~ 807 (917)
+|.|.++|....+..............++.|+|+|+++++++ .++.|.++|..+++.+..... .... .... ++|
T Consensus 319 ~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~~~p 398 (567)
T 1qks_A 319 TGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHP 398 (567)
T ss_dssp TTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEET
T ss_pred CCeEEEEecCCCccceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCccceeeECC
Confidence 699999999876433222213445677899999999987766 578999999999988776655 2111 1222 466
Q ss_pred C-CEEEEEe--CCCeEEEEECCC-------CEEEEEEecCCCc-e-EEEeecCCEEEEEeC-------CCeEEEEECcCC
Q psy3053 808 E-EKVILGG--ALGMVYLVDLIQ-------VQLLKQVRAHKDA-V-LSLHFDNCTMLVGCW-------DSCVVIYDVECG 868 (917)
Q Consensus 808 ~-~~lv~gs--~dG~I~vwdl~~-------~~~i~~l~~h~~~-V-~sis~dg~~Lasgs~-------DG~I~Iwdl~tg 868 (917)
+ +.+.+.+ .++.|.++|..+ .+.++++...... + ...+|+++++.+... .++|.++|+.+.
T Consensus 399 ~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~ 478 (567)
T 1qks_A 399 TFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAM 478 (567)
T ss_dssp TTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGC
T ss_pred CCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcc
Confidence 5 4555444 468999999987 6788888764333 2 345899999988763 459999999877
Q ss_pred -----e-EEEEec--------CCCCCEEEEEEcCCCCEEEEEe-----CCCcEEEEecCcceE
Q psy3053 869 -----R-IVTELA--------GHEDAISCVAWDEKRKRLISGN-----LVGAPKLYATEFYLL 912 (917)
Q Consensus 869 -----~-~l~~l~--------~h~~~V~slafSpdg~~LaSgs-----~DG~V~IWdl~~~ll 912 (917)
. ....+. .....+..+.|+|+|+.+..+. .++.|.|+|.++..+
T Consensus 479 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~s~~~~~~~~~~i~v~D~~t~~~ 541 (567)
T 1qks_A 479 TGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTLEL 541 (567)
T ss_dssp CCSSSCCCEEEECHHHHHTCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTTTEE
T ss_pred cccccCCCcEEeccccccccCCCCcceEeeeECCCCCEEEEEeecCCCCCCcEEEEECCCceE
Confidence 2 112332 1235789999999999887763 379999999987643
No 172
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.67 E-value=2.8e-15 Score=184.42 Aligned_cols=271 Identities=12% Similarity=0.100 Sum_probs=187.4
Q ss_pred eEEEEEeCCCCEEEEEecccEEEEEEeccCeeeEEeccCCCc-----eeEEEecCCCCEEEEEECC---------CeEEE
Q psy3053 625 LSSLCILPDNCTMLVGCWDSCVVIYDVECGRIVTELAGHEDA-----ISCVAWDEKRKRLISGSWD---------CTVRV 690 (917)
Q Consensus 625 V~sl~~spd~~~Lasgs~Dg~I~Iwdl~tg~~i~~l~~H~~~-----Vt~l~~spd~~~L~Sgs~D---------gtI~v 690 (917)
..++.|+||+.+++++ ||+|++||+.+++....+.+|... ...++|||||++|+.++.+ +.+.+
T Consensus 19 ~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~ 96 (740)
T 4a5s_A 19 LYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDI 96 (740)
T ss_dssp CCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEE
T ss_pred ccccEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEEE
Confidence 4578999999988886 999999999999988888887643 2347899999999999876 56679
Q ss_pred EeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEEEECCCeEEEEECCCCeeeEEecCCCCCCe-----------
Q psy3053 691 WNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGELIIWSLENHLMTQQLSDDINASV----------- 759 (917)
Q Consensus 691 Wdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~dG~I~iwDl~~~~~~~~l~~~h~~~V----------- 759 (917)
||+.++ .......+...+...+|||||+.||.+. ++.|++|++.++...+....++...+
T Consensus 97 ~d~~~~--------~~~~l~~~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~e 167 (740)
T 4a5s_A 97 YDLNKR--------QLITEERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEE 167 (740)
T ss_dssp EETTTT--------EECCSSCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHH
T ss_pred EECCCC--------cEEEcccCCCcceeeEECCCCCEEEEEE-CCeEEEEECCCCceEEEcCCCCccceecCcccccccc
Confidence 999886 2223445667899999999999999885 68999999998876543332332222
Q ss_pred ------EEEEEecCCCEEEEEeCCC------------------------------------eEEEEECCC---C---eEE
Q psy3053 760 ------NGVLFSEDGCRVLSCGNNC------------------------------------MLNVYDLTT---G---MQV 791 (917)
Q Consensus 760 ------~~v~fspdg~~L~s~s~Dg------------------------------------~I~iwDl~t---g---~~i 791 (917)
..+.|||||+.|+.++.|. .|++||+.+ + +..
T Consensus 168 e~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~ 247 (740)
T 4a5s_A 168 EVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSI 247 (740)
T ss_dssp HTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEE
T ss_pred hhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEE
Confidence 3589999999999875321 588899988 7 333
Q ss_pred EEee------cCCceEEEEEeCCCEEEE-EeC----CCeEEEEECCCCE----EE--EEE--ecCCCceE-------EEe
Q psy3053 792 CNKV------FEEKLLCLSWAGEEKVIL-GGA----LGMVYLVDLIQVQ----LL--KQV--RAHKDAVL-------SLH 845 (917)
Q Consensus 792 ~~~~------~~~~i~~l~~s~~~~lv~-gs~----dG~I~vwdl~~~~----~i--~~l--~~h~~~V~-------sis 845 (917)
.... +...+..++|+|++.+++ ... +..|.+||+.+++ +. ..+ .+|...+. ..+
T Consensus 248 ~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fs 327 (740)
T 4a5s_A 248 QITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFT 327 (740)
T ss_dssp EECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEEC
T ss_pred EecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEc
Confidence 2221 344588999999988443 222 2479999998876 21 111 34543332 347
Q ss_pred ecCCEEE-EEeC-CC--eEEEEECcCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCC-----CcEEEEecC
Q psy3053 846 FDNCTML-VGCW-DS--CVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGNLV-----GAPKLYATE 908 (917)
Q Consensus 846 ~dg~~La-sgs~-DG--~I~Iwdl~tg~~l~~l~~h~~~V~slafSpdg~~LaSgs~D-----G~V~IWdl~ 908 (917)
|||+.++ ..+. +| .|++||..+++... +......|..+.+ +|++.|+..+.. +...+|.++
T Consensus 328 pDG~~l~~~~s~~~G~~~l~~~~~~~~~~~~-lT~g~~~v~~~~~-~d~~~i~f~~~~~~~~~~~~~ly~v~ 397 (740)
T 4a5s_A 328 LDGNSFYKIISNEEGYRHICYFQIDKKDCTF-ITKGTWEVIGIEA-LTSDYLYYISNEYKGMPGGRNLYKIQ 397 (740)
T ss_dssp TTSSEEEEEEECTTSCEEEEEEETTCSSCEE-SCCSSSCEEEEEE-ECSSEEEEEESCGGGCTTCBEEEEEE
T ss_pred CCCCEEEEEEEcCCCceEEEEEECCCCceEe-cccCCEEEEEEEE-EeCCEEEEEEecCCCCCceeEEEEEE
Confidence 8999877 6653 44 68888988766554 4434455665542 446666554432 445555543
No 173
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.66 E-value=8.7e-14 Score=149.69 Aligned_cols=240 Identities=12% Similarity=0.137 Sum_probs=178.8
Q ss_pred ccCCcceEEEEEeCCCcEEEEEecCCceEEEeccCCceeeeeec------cccceEEEEEe-CCCCEEEEEec-ccEEEE
Q psy3053 577 HSHKEAITAVAICGEGISVASVGRDAMLKIHSLKTGRQERSAVL------SSMTLSSLCIL-PDNCTMLVGCW-DSCVVI 648 (917)
Q Consensus 577 ~~H~~~Vtsv~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~~~~------~~~~V~sl~~s-pd~~~Lasgs~-Dg~I~I 648 (917)
.+|-..+.+++++++|+++++.+.++.|.+||.. ++....+.. +...+.++++. +++.++++... ++.|.+
T Consensus 26 ~g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~ 104 (286)
T 1q7f_A 26 EGQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQI 104 (286)
T ss_dssp TTCBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEE
T ss_pred CCccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEE
Confidence 4566778999999999988888889999999977 555554432 23457888995 67766666544 899999
Q ss_pred EEeccCeeeEEec-cCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeee--ccCCCceEEEEEeCCC
Q psy3053 649 YDVECGRIVTELA-GHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQ--LDLDNRIKCLAISKDN 725 (917)
Q Consensus 649 wdl~tg~~i~~l~-~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~--~~h~~~V~~l~~spdg 725 (917)
|+ .+++.+..+. .+...+.+++++++++.+++.+.++.|.+||.... ..... ..+...+.+++++++|
T Consensus 105 ~d-~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~--------~~~~~~~~~~~~~p~~i~~~~~g 175 (286)
T 1q7f_A 105 YN-QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGN--------VLHKFGCSKHLEFPNGVVVNDKQ 175 (286)
T ss_dssp EC-TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTSC--------EEEEEECTTTCSSEEEEEECSSS
T ss_pred EC-CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCCCC--------EEEEeCCCCccCCcEEEEECCCC
Confidence 99 5677666664 34467899999999998888778899999996432 11111 1344568999999999
Q ss_pred CEEEEEECCCeEEEEECCCCeeeEEecC-CCCCCeEEEEEecCCCEEEEEeCCC-eEEEEECCCCeEEEEeecC---Cce
Q psy3053 726 NQLAVGTEAGELIIWSLENHLMTQQLSD-DINASVNGVLFSEDGCRVLSCGNNC-MLNVYDLTTGMQVCNKVFE---EKL 800 (917)
Q Consensus 726 ~~Lasgs~dG~I~iwDl~~~~~~~~l~~-~h~~~V~~v~fspdg~~L~s~s~Dg-~I~iwDl~tg~~i~~~~~~---~~i 800 (917)
+++++.+.++.|.+||.. ++.+..+.. ++...+.+++++++|+++++...++ .|.+||. +++.+..+... ..+
T Consensus 176 ~l~v~~~~~~~i~~~~~~-g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~ 253 (286)
T 1q7f_A 176 EIFISDNRAHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESKVKHAQC 253 (286)
T ss_dssp EEEEEEGGGTEEEEEETT-CCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEESSCCSCE
T ss_pred CEEEEECCCCEEEEEcCC-CCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECC-CCCEEEEEcccCCCCcc
Confidence 988887888999999985 455555542 2236789999999998888887776 9999996 45555544432 236
Q ss_pred EEEEEeCCCEEEEEeCCCeEEEEECCCC
Q psy3053 801 LCLSWAGEEKVILGGALGMVYLVDLIQV 828 (917)
Q Consensus 801 ~~l~~s~~~~lv~gs~dG~I~vwdl~~~ 828 (917)
.++++++++.+++++.++.|++|+....
T Consensus 254 ~~i~~~~~g~l~vs~~~~~v~v~~~~~~ 281 (286)
T 1q7f_A 254 FDVALMDDGSVVLASKDYRLYIYRYVQL 281 (286)
T ss_dssp EEEEEETTTEEEEEETTTEEEEEECSCC
T ss_pred eeEEECCCCcEEEECCCCeEEEEEcccc
Confidence 7889998888887788899999987543
No 174
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.66 E-value=2e-14 Score=174.05 Aligned_cols=288 Identities=14% Similarity=0.024 Sum_probs=196.8
Q ss_pred eeeccccceEEEEEeCCCCEEEEE--ecccEEEEEEeccCeeeEEeccCCCcee---------EEEec--CCCCE-EEEE
Q psy3053 617 SAVLSSMTLSSLCILPDNCTMLVG--CWDSCVVIYDVECGRIVTELAGHEDAIS---------CVAWD--EKRKR-LISG 682 (917)
Q Consensus 617 ~~~~~~~~V~sl~~spd~~~Lasg--s~Dg~I~Iwdl~tg~~i~~l~~H~~~Vt---------~l~~s--pd~~~-L~Sg 682 (917)
.+..|...+..++++++.-.++.+ +.++...||....+.....+..|...+. ...|+ |||+. |+.+
T Consensus 18 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~ 97 (662)
T 3azo_A 18 LVASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFT 97 (662)
T ss_dssp HHHHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEE
T ss_pred HHhhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCcceeCCCCccccccccccCCccceeeeecCCCeEEEEE
Confidence 345677789999999886666666 5588999999765666677777776666 66665 99998 7765
Q ss_pred EC-CCeEEEEeCC--C-CCCCccCCcceeeecc-----CCCceEEEEEeCCCCEEEEEECC----------CeEEEEECC
Q psy3053 683 SW-DCTVRVWNTG--A-SWSHMKPSKSLVSQLD-----LDNRIKCLAISKDNNQLAVGTEA----------GELIIWSLE 743 (917)
Q Consensus 683 s~-DgtI~vWdl~--~-~~~~~~~~~~~~~~~~-----h~~~V~~l~~spdg~~Lasgs~d----------G~I~iwDl~ 743 (917)
+. +..|.+|++. + + ....... +...+.+++|+|||+.|++++.+ ..|++||+.
T Consensus 98 ~~~~~~l~~~~~~~~g~~--------~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~ 169 (662)
T 3azo_A 98 HFGDQRLYAFEPDAPGGA--------VPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLD 169 (662)
T ss_dssp BTTTCCEEEECTTSTTCC--------CCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETT
T ss_pred ECCCCeEEEEcCCCCCCC--------CCEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECC
Confidence 53 5567777765 2 2 1111222 56678899999999999998876 589999998
Q ss_pred C------CeeeEEecCCCCCCeEEEEEecCCCEEEEEeCC--------CeEEEEECC-CC---eEEEEeec-CCceEEEE
Q psy3053 744 N------HLMTQQLSDDINASVNGVLFSEDGCRVLSCGNN--------CMLNVYDLT-TG---MQVCNKVF-EEKLLCLS 804 (917)
Q Consensus 744 ~------~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~D--------g~I~iwDl~-tg---~~i~~~~~-~~~i~~l~ 804 (917)
+ ++.. .+...+...+..++|||||+.|+.++.+ ..|.+||+. ++ +....... ...+..++
T Consensus 170 ~~~~~~~~~~~-~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~ 248 (662)
T 3azo_A 170 GSAAADRSAVR-ELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAE 248 (662)
T ss_dssp STTTTCGGGSE-ESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEE
T ss_pred CCccccCCcee-EEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceE
Confidence 8 5543 3321234677889999999999988755 379999998 56 43333333 57789999
Q ss_pred EeCCCEEE-EEeCCC--eEEEEECCCCEEEEEEecCCCc--------eE--EEeecCCEEEEEeCCCeEEEE--ECcCCe
Q psy3053 805 WAGEEKVI-LGGALG--MVYLVDLIQVQLLKQVRAHKDA--------VL--SLHFDNCTMLVGCWDSCVVIY--DVECGR 869 (917)
Q Consensus 805 ~s~~~~lv-~gs~dG--~I~vwdl~~~~~i~~l~~h~~~--------V~--sis~dg~~Lasgs~DG~I~Iw--dl~tg~ 869 (917)
|++++.++ +++.+| .|.+||+.+++.......+... +. +++++++++++++. |.+++| |+.+++
T Consensus 249 ~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~~ 327 (662)
T 3azo_A 249 WAPDGSLIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILDPESGE 327 (662)
T ss_dssp ECTTSCEEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEETTTTE
T ss_pred ECCCCeEEEEECCCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEEECCCCc
Confidence 99887654 455566 6777887677654433333221 22 33568899999998 999999 555555
Q ss_pred EEEEecCCCCCEEEE-EEcCCCCEEEEEeCCCc--EEEEecCcceEEEE
Q psy3053 870 IVTELAGHEDAISCV-AWDEKRKRLISGNLVGA--PKLYATEFYLLYVL 915 (917)
Q Consensus 870 ~l~~l~~h~~~V~sl-afSpdg~~LaSgs~DG~--V~IWdl~~~ll~~L 915 (917)
+..+..|...+..+ +++++.-.+++++.+.. |.+|++++..+..+
T Consensus 328 -~~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~l 375 (662)
T 3azo_A 328 -LVDAAGPWTEWAATLTVSGTRAVGVAASPRTAYEVVELDTVTGRARTI 375 (662)
T ss_dssp -EEECCSSCCEEEEEEEEETTEEEEEEEETTEEEEEEEEETTTCCEEEE
T ss_pred -EEEecCCCCeEEEEEecCCCEEEEEEcCCCCCCEEEEEECCCCceEEe
Confidence 67788888788877 55444334445566654 44555556555444
No 175
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.65 E-value=7e-14 Score=154.49 Aligned_cols=252 Identities=12% Similarity=0.109 Sum_probs=174.7
Q ss_pred eEEEEEeCCCCEEEEEe---------cccEEEEEEeccCeeeEEeccCCCceeEEEecCCCCEEEEEECC---C--eEEE
Q psy3053 625 LSSLCILPDNCTMLVGC---------WDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGSWD---C--TVRV 690 (917)
Q Consensus 625 V~sl~~spd~~~Lasgs---------~Dg~I~Iwdl~tg~~i~~l~~H~~~Vt~l~~spd~~~L~Sgs~D---g--tI~v 690 (917)
+...++ ||+.++... .++.|++|++.+++... + ..+.+++|+|||+.|+.++.+ + .|.+
T Consensus 17 ~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~-l----~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~ 89 (347)
T 2gop_A 17 LSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARRF-I----ENATMPRISPDGKKIAFMRANEEKKVSEIWV 89 (347)
T ss_dssp EEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEE-E----ESCEEEEECTTSSEEEEEEEETTTTEEEEEE
T ss_pred cccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceEE-c----ccCCCeEECCCCCEEEEEEeccCCCcceEEE
Confidence 455556 777776542 36789999999887543 3 568899999999999988754 3 3777
Q ss_pred EeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEEEECC---------------------------CeEEEEECC
Q psy3053 691 WNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEA---------------------------GELIIWSLE 743 (917)
Q Consensus 691 Wdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~d---------------------------G~I~iwDl~ 743 (917)
|++.++ .......+.. +.+++|+|+|+.|+.++.+ ..|.+||+.
T Consensus 90 ~~~~~g--------~~~~l~~~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~ 160 (347)
T 2gop_A 90 ADLETL--------SSKKILEAKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTE 160 (347)
T ss_dssp EETTTT--------EEEEEEEESE-EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETT
T ss_pred EECCCC--------ceEEEEcCCC-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECC
Confidence 787664 2222222333 8999999999998887642 579999999
Q ss_pred CCeeeEEecCCCCCCeEEEEEecCCCEEEEEeCCC---------eEEEEECCCCeEEEEeecCCceEEEEEeCCC-EEEE
Q psy3053 744 NHLMTQQLSDDINASVNGVLFSEDGCRVLSCGNNC---------MLNVYDLTTGMQVCNKVFEEKLLCLSWAGEE-KVIL 813 (917)
Q Consensus 744 ~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~Dg---------~I~iwDl~tg~~i~~~~~~~~i~~l~~s~~~-~lv~ 813 (917)
+++.+..+.. . .+..++|+|+| .++++..++ .|.++| +++....... ..+.++ +|++ .++.
T Consensus 161 ~~~~~~~l~~--~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~-~~~~~~--spdg~~l~~ 231 (347)
T 2gop_A 161 SEEVIEEFEK--P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWE--DGKEEKMFEK-VSFYAV--DSDGERILL 231 (347)
T ss_dssp TTEEEEEEEE--E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEE--TTEEEEEEEE-ESEEEE--EECSSCEEE
T ss_pred CCeEEeeecC--C-CcccccCCCCe-EEEEEecccccccccccccEEEeC--CCceEEeccC-cceeeE--CCCCCEEEE
Confidence 9887455552 3 78899999999 777775542 455555 5654433333 444444 5555 3555
Q ss_pred EeCC--------CeEEEEECCCCEEEEEEecCCCceEE-Eee-cCCEEEEEeCCCeEEEEECcCCeEEEEecCCCCCEEE
Q psy3053 814 GGAL--------GMVYLVDLIQVQLLKQVRAHKDAVLS-LHF-DNCTMLVGCWDSCVVIYDVECGRIVTELAGHEDAISC 883 (917)
Q Consensus 814 gs~d--------G~I~vwdl~~~~~i~~l~~h~~~V~s-is~-dg~~Lasgs~DG~I~Iwdl~tg~~l~~l~~h~~~V~s 883 (917)
++.+ +.|.+|| +++......++...+.. +.+ ++ ++++++.+|.+++| +.+++..... .+.+.|.+
T Consensus 232 ~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~~~~~~~~~~~~sdg-~~~~~~~~~~~~l~-~~~g~~~~~~-~~~~~v~~ 306 (347)
T 2gop_A 232 YGKPEKKYMSEHNKLYIYD--GKEVMGILDEVDRGVGQAKIKDGK-VYFTLFEEGSVNLY-IWDGEIKPIA-KGRHWIMG 306 (347)
T ss_dssp EECCSSSCCCSSCEEEEEC--SSCEEESSTTCCSEEEEEEEETTE-EEEEEEETTEEEEE-EESSSEEEEE-CSSSEEEE
T ss_pred EEccccCCccccceEEEEC--CCceEeccccCCcccCCccEEcCc-EEEEEecCCcEEEE-EcCCceEEEe-cCCCeEEe
Confidence 5533 4788888 56554444556667765 533 66 88889999999999 8877664444 45778999
Q ss_pred EEEcCCCCEEEEEeCCCcE-EEEecC
Q psy3053 884 VAWDEKRKRLISGNLVGAP-KLYATE 908 (917)
Q Consensus 884 lafSpdg~~LaSgs~DG~V-~IWdl~ 908 (917)
++|+| ..+++++.++.. .+|.++
T Consensus 307 ~~~s~--~~~~~~~~~~~~~~l~~~~ 330 (347)
T 2gop_A 307 FDVDE--IVVYLKETATRLRELFTWD 330 (347)
T ss_dssp EEESS--SEEEEEECSSSCCEEEEES
T ss_pred eeeeC--cEEEEEcCCCChHHheEeC
Confidence 99999 678888777765 788776
No 176
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.65 E-value=6.6e-14 Score=154.67 Aligned_cols=254 Identities=8% Similarity=-0.001 Sum_probs=185.0
Q ss_pred cceEEEEEeCCCCEEEEEecc------------------------cEEEEEEeccCeeeEEec-cCCCceeEEEecCCCC
Q psy3053 623 MTLSSLCILPDNCTMLVGCWD------------------------SCVVIYDVECGRIVTELA-GHEDAISCVAWDEKRK 677 (917)
Q Consensus 623 ~~V~sl~~spd~~~Lasgs~D------------------------g~I~Iwdl~tg~~i~~l~-~H~~~Vt~l~~spd~~ 677 (917)
..+.+++++|+|+++++...+ +.|.+||..+++....+. ++-.....++++++++
T Consensus 24 ~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g~ 103 (329)
T 3fvz_A 24 GQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDGN 103 (329)
T ss_dssp SCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTSC
T ss_pred CCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCCCC
Confidence 457889999999888887776 479999999998876664 4556789999999999
Q ss_pred EEEEEECCCeEEEEeCCCCCCCccCCc---ceeeeccCCCceEEEEEeC-CCCEEEEEE-CCCeEEEEECCCCeeeEEec
Q psy3053 678 RLISGSWDCTVRVWNTGASWSHMKPSK---SLVSQLDLDNRIKCLAISK-DNNQLAVGT-EAGELIIWSLENHLMTQQLS 752 (917)
Q Consensus 678 ~L~Sgs~DgtI~vWdl~~~~~~~~~~~---~~~~~~~h~~~V~~l~~sp-dg~~Lasgs-~dG~I~iwDl~~~~~~~~l~ 752 (917)
.+++.+.++.|.+||............ .......+-..+..++++| ++.++++.+ .++.|.+|| .++..+..+.
T Consensus 104 l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~-~~g~~~~~~~ 182 (329)
T 3fvz_A 104 YWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS-PSGKFVTQWG 182 (329)
T ss_dssp EEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEEC-TTSCEEEEEC
T ss_pred EEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc-CCCCEEEEec
Confidence 888888899999999754310000000 0000023344688999999 788888876 689999999 5566666654
Q ss_pred CC---------CCCCeEEEEEecC-CCEEEEEeCCCeEEEEECCCCeEEEEeec---CCceEEEEEeCCCEEEEEeCCCe
Q psy3053 753 DD---------INASVNGVLFSED-GCRVLSCGNNCMLNVYDLTTGMQVCNKVF---EEKLLCLSWAGEEKVILGGALGM 819 (917)
Q Consensus 753 ~~---------h~~~V~~v~fspd-g~~L~s~s~Dg~I~iwDl~tg~~i~~~~~---~~~i~~l~~s~~~~lv~gs~dG~ 819 (917)
.. +-.....++++|+ |.++++...++.|++||..+|+.+..+.. ...+.+++++| +.++..
T Consensus 183 ~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~p-g~~~~~----- 256 (329)
T 3fvz_A 183 EESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIP-GFLFAV----- 256 (329)
T ss_dssp EECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEET-TEEEEE-----
T ss_pred cCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecC-CEEEEe-----
Confidence 11 1234889999998 76777777888999999988877766532 23455555555 232221
Q ss_pred EEEEECCCCEEEEEEecCCCceEEEeecCCEEEEEeCCCeEEEEECcCCeEEEEe---cCCCCCEEEEEEcCCCCEEEEE
Q psy3053 820 VYLVDLIQVQLLKQVRAHKDAVLSLHFDNCTMLVGCWDSCVVIYDVECGRIVTEL---AGHEDAISCVAWDEKRKRLISG 896 (917)
Q Consensus 820 I~vwdl~~~~~i~~l~~h~~~V~sis~dg~~Lasgs~DG~I~Iwdl~tg~~l~~l---~~h~~~V~slafSpdg~~LaSg 896 (917)
+|+..++...++.|++|+..+++.+..+ .++...+.+++++|+|..+++.
T Consensus 257 ---------------------------~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad 309 (329)
T 3fvz_A 257 ---------------------------NGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGD 309 (329)
T ss_dssp ---------------------------ECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEE
T ss_pred ---------------------------CCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEE
Confidence 2333344455678999999999988887 3667789999999999888888
Q ss_pred eCCCcEEEEecCcc
Q psy3053 897 NLVGAPKLYATEFY 910 (917)
Q Consensus 897 s~DG~V~IWdl~~~ 910 (917)
..++.|++|++++.
T Consensus 310 ~~~~~I~~~~~~~~ 323 (329)
T 3fvz_A 310 AHTNTVWKFTLTEK 323 (329)
T ss_dssp SSSCCEEEEEEEEC
T ss_pred CCCCEEEEEeCCcc
Confidence 89999999998754
No 177
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.65 E-value=6.5e-14 Score=154.72 Aligned_cols=266 Identities=15% Similarity=0.165 Sum_probs=180.9
Q ss_pred cceEEEEEeCCCcEEEEEe---------cCCceEEEeccCCceeeeeeccccceEEEEEeCCCCEEEEEecc---c--EE
Q psy3053 581 EAITAVAICGEGISVASVG---------RDAMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTMLVGCWD---S--CV 646 (917)
Q Consensus 581 ~~Vtsv~fSpdg~~Lasgs---------~Dg~I~IWd~~t~~~~~~~~~~~~~V~sl~~spd~~~Lasgs~D---g--~I 646 (917)
..+...++ ||+.++... .++.|.+|++.+++... + ..+.+++|+|||+.|+.++.+ + .|
T Consensus 15 ~~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~-l----~~~~~~~~SpDg~~la~~~~~~~~~~~~l 87 (347)
T 2gop_A 15 AYLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARRF-I----ENATMPRISPDGKKIAFMRANEEKKVSEI 87 (347)
T ss_dssp CEEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEE-E----ESCEEEEECTTSSEEEEEEEETTTTEEEE
T ss_pred EEcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceEE-c----ccCCCeEECCCCCEEEEEEeccCCCcceE
Confidence 34566777 888777643 25679999998876533 3 467889999999999988764 3 48
Q ss_pred EEEEeccCeeeEEeccCCCceeEEEecCCCCEEEEEECC---------------------------CeEEEEeCCCCCCC
Q psy3053 647 VIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGSWD---------------------------CTVRVWNTGASWSH 699 (917)
Q Consensus 647 ~Iwdl~tg~~i~~l~~H~~~Vt~l~~spd~~~L~Sgs~D---------------------------gtI~vWdl~~~~~~ 699 (917)
++|++.+++.......+ . +.+++|+|+|+.|+.++.+ ..|.+||+.++.
T Consensus 88 ~~~~~~~g~~~~l~~~~-~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~-- 163 (347)
T 2gop_A 88 WVADLETLSSKKILEAK-N-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEE-- 163 (347)
T ss_dssp EEEETTTTEEEEEEEES-E-EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTE--
T ss_pred EEEECCCCceEEEEcCC-C-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCe--
Confidence 88888888766555433 3 9999999999999888743 578899987651
Q ss_pred ccCCcceeeeccCCCceEEEEEeCCCCEEEEEECCC---------eEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCE
Q psy3053 700 MKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAG---------ELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCR 770 (917)
Q Consensus 700 ~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~dG---------~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~ 770 (917)
....... . .+..++|+|+| +++++..++ .|.++| +++.. .+. .+ ..+..+ +|+|+.
T Consensus 164 -----~~~~l~~-~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d--~~~~~-~l~-~~-~~~~~~--spdg~~ 228 (347)
T 2gop_A 164 -----VIEEFEK-P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWE--DGKEE-KMF-EK-VSFYAV--DSDGER 228 (347)
T ss_dssp -----EEEEEEE-E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEE--TTEEE-EEE-EE-ESEEEE--EECSSC
T ss_pred -----EEeeecC-C-CcccccCCCCe-EEEEEecccccccccccccEEEeC--CCceE-Eec-cC-cceeeE--CCCCCE
Confidence 1011222 2 68899999999 777776542 455555 55543 333 23 445444 999999
Q ss_pred EEEEeCC--------CeEEEEECCCCeEEEEee-cCCceEE-EEEeCCCEEEEEeCCCeEEEEECCCCEEEEEEecCCCc
Q psy3053 771 VLSCGNN--------CMLNVYDLTTGMQVCNKV-FEEKLLC-LSWAGEEKVILGGALGMVYLVDLIQVQLLKQVRAHKDA 840 (917)
Q Consensus 771 L~s~s~D--------g~I~iwDl~tg~~i~~~~-~~~~i~~-l~~s~~~~lv~gs~dG~I~vwdl~~~~~i~~l~~h~~~ 840 (917)
|+.++.+ ..|.+|| +++...... +...+.. +.|+ ++.+++++.++.+++| +.+++.. .+..+...
T Consensus 229 l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~~~~~~~~~~~~s-dg~~~~~~~~~~~~l~-~~~g~~~-~~~~~~~~ 303 (347)
T 2gop_A 229 ILLYGKPEKKYMSEHNKLYIYD--GKEVMGILDEVDRGVGQAKIKD-GKVYFTLFEEGSVNLY-IWDGEIK-PIAKGRHW 303 (347)
T ss_dssp EEEEECCSSSCCCSSCEEEEEC--SSCEEESSTTCCSEEEEEEEET-TEEEEEEEETTEEEEE-EESSSEE-EEECSSSE
T ss_pred EEEEEccccCCccccceEEEEC--CCceEeccccCCcccCCccEEc-CcEEEEEecCCcEEEE-EcCCceE-EEecCCCe
Confidence 9887754 3688888 555443322 2455665 8898 7677778889999999 8766654 34445777
Q ss_pred eEEEeecCCEEEEEeCCCeE-EEEECcCCeEEEEecCCCC
Q psy3053 841 VLSLHFDNCTMLVGCWDSCV-VIYDVECGRIVTELAGHED 879 (917)
Q Consensus 841 V~sis~dg~~Lasgs~DG~I-~Iwdl~tg~~l~~l~~h~~ 879 (917)
|.++++.+..+++++.++.. .+|.+. ++ ...+..|..
T Consensus 304 v~~~~~s~~~~~~~~~~~~~~~l~~~~-g~-~~~lt~~n~ 341 (347)
T 2gop_A 304 IMGFDVDEIVVYLKETATRLRELFTWD-GE-EKQLTDYND 341 (347)
T ss_dssp EEEEEESSSEEEEEECSSSCCEEEEES-SS-EEECCCTTS
T ss_pred EEeeeeeCcEEEEEcCCCChHHheEeC-Cc-EEEeccccH
Confidence 88876544677777777665 777776 55 444555544
No 178
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.65 E-value=5.2e-14 Score=154.85 Aligned_cols=266 Identities=8% Similarity=-0.011 Sum_probs=190.6
Q ss_pred cceEEEEEeCCCCEEEEEecccEEEEEEeccCeeeEEeccCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccC
Q psy3053 623 MTLSSLCILPDNCTMLVGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKP 702 (917)
Q Consensus 623 ~~V~sl~~spd~~~Lasgs~Dg~I~Iwdl~tg~~i~~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~ 702 (917)
..+.+++|++++..++..+.++.++.| .++....+..+...+.+++|+++++.+++++.++.|.+||..++.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~----- 77 (333)
T 2dg1_A 6 QDLPTLFYSGKSNSAVPIISESELQTI---TAEPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKE----- 77 (333)
T ss_dssp CCCCBCCSCGGGGCSSCCCCGGGSCEE---ECEEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCC-----
T ss_pred cccceeeecCCccceeEEeecccCccc---ccceeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCc-----
Confidence 346677888888777777888899999 456667777777888999999999988888889999999987651
Q ss_pred CcceeeeccCCCceEEEEEeCCCCEEEEEECC----CeEEEEECCCCeeeEEec-CCCCCCeEEEEEecCCCEEEEEeC-
Q psy3053 703 SKSLVSQLDLDNRIKCLAISKDNNQLAVGTEA----GELIIWSLENHLMTQQLS-DDINASVNGVLFSEDGCRVLSCGN- 776 (917)
Q Consensus 703 ~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~d----G~I~iwDl~~~~~~~~l~-~~h~~~V~~v~fspdg~~L~s~s~- 776 (917)
.......+...+.+++++++|++++++..+ +.|.+||..++.....+. ......+.+++++|+|+.+++...
T Consensus 78 --~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~ 155 (333)
T 2dg1_A 78 --IKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRG 155 (333)
T ss_dssp --EEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCC
T ss_pred --EEEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECCCCCEEEEeccc
Confidence 111112456779999999999988877666 689999998876553332 134567899999999987776654
Q ss_pred -----CCeEEEEECCCCeEEEEeecCCceEEEEEeCCCE-EEE-EeCCCeEEEEECCC-CEEEE--------EEecCCCc
Q psy3053 777 -----NCMLNVYDLTTGMQVCNKVFEEKLLCLSWAGEEK-VIL-GGALGMVYLVDLIQ-VQLLK--------QVRAHKDA 840 (917)
Q Consensus 777 -----Dg~I~iwDl~tg~~i~~~~~~~~i~~l~~s~~~~-lv~-gs~dG~I~vwdl~~-~~~i~--------~l~~h~~~ 840 (917)
.+.|..+|..+++..........+..+++++++. +++ .+.++.|.+||..+ +..+. .+.++ ..
T Consensus 156 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~-~~ 234 (333)
T 2dg1_A 156 YSTNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGH-EG 234 (333)
T ss_dssp BTTBCCEEEEEECTTSCCEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSS-SE
T ss_pred cccCCCceEEEEeCCCCEEEEeecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCC-CC
Confidence 3567777776655443333334578899998864 544 44578999999963 32221 11122 34
Q ss_pred eEEE--eecCCEEEEEeCCCeEEEEECcCCeEEEEecCCCC------CEEEEEEcCCCCEEEEEeCCC
Q psy3053 841 VLSL--HFDNCTMLVGCWDSCVVIYDVECGRIVTELAGHED------AISCVAWDEKRKRLISGNLVG 900 (917)
Q Consensus 841 V~si--s~dg~~Lasgs~DG~I~Iwdl~tg~~l~~l~~h~~------~V~slafSpdg~~LaSgs~DG 900 (917)
+..+ +++|++.++...++.|.+||. +++.+..+..+.. .+.+++|+||++.|+.++.+|
T Consensus 235 ~~~i~~d~~G~l~v~~~~~~~v~~~d~-~g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~g 301 (333)
T 2dg1_A 235 PDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSNDI 301 (333)
T ss_dssp EEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEECG
T ss_pred CCceEECCCCCEEEEEcCCCEEEEECC-CCCEEEEEEcCCCccccccCcceEEECCCCCEEEEEeCcc
Confidence 4555 567888887778899999998 4666666654433 689999999988887666553
No 179
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.64 E-value=1.9e-14 Score=161.60 Aligned_cols=263 Identities=12% Similarity=-0.001 Sum_probs=169.2
Q ss_pred EEeccCCceeeeeeccccceEE-----EEEeCCCCEEEEEec-cc--EEEEEEeccCeeeEEeccCCCceeEEEecCCCC
Q psy3053 606 IHSLKTGRQERSAVLSSMTLSS-----LCILPDNCTMLVGCW-DS--CVVIYDVECGRIVTELAGHEDAISCVAWDEKRK 677 (917)
Q Consensus 606 IWd~~t~~~~~~~~~~~~~V~s-----l~~spd~~~Lasgs~-Dg--~I~Iwdl~tg~~i~~l~~H~~~Vt~l~~spd~~ 677 (917)
.++..++.....+..+...... .+|+|||+.|+.++. +| .|.+||+.+++......++...+.+++|+||++
T Consensus 14 ~~~~~~g~~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~ 93 (388)
T 3pe7_A 14 YQDASTGAQVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDD 93 (388)
T ss_dssp EECTTTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSS
T ss_pred EecCCCCcceEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCC
Confidence 3456667777777666554444 789999999999887 66 488889999988877777777776788999999
Q ss_pred EEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEE--EEeCCCCEEEEEE----------------------C
Q psy3053 678 RLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCL--AISKDNNQLAVGT----------------------E 733 (917)
Q Consensus 678 ~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l--~~spdg~~Lasgs----------------------~ 733 (917)
.|+.++.++.|.+||+.++. .......+...+... .+++++..++... .
T Consensus 94 ~l~~~~~~~~l~~~d~~~g~-------~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (388)
T 3pe7_A 94 ALFYVKDGRNLMRVDLATLE-------ENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKP 166 (388)
T ss_dssp EEEEEETTTEEEEEETTTCC-------EEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCC
T ss_pred EEEEEeCCCeEEEEECCCCc-------ceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCC
Confidence 99999999999999998762 111122233334333 3489999887432 3
Q ss_pred CCeEEEEECCCCeeeEEecCCCCCCeEEEEEec-CCCEEEEEeCC------CeEEEEECCCCeEEEEeecC--CceEEEE
Q psy3053 734 AGELIIWSLENHLMTQQLSDDINASVNGVLFSE-DGCRVLSCGNN------CMLNVYDLTTGMQVCNKVFE--EKLLCLS 804 (917)
Q Consensus 734 dG~I~iwDl~~~~~~~~l~~~h~~~V~~v~fsp-dg~~L~s~s~D------g~I~iwDl~tg~~i~~~~~~--~~i~~l~ 804 (917)
++.|.+||+.+++..... .+...+..++|+| ||+.|+.+..+ ..|.++|..++......... ..+...+
T Consensus 167 ~~~l~~~d~~~g~~~~l~--~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~ 244 (388)
T 3pe7_A 167 CCRLMRVDLKTGESTVIL--QENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRKVKTHAEGESCTHEF 244 (388)
T ss_dssp CEEEEEEETTTCCEEEEE--EESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEESCCCCTTEEEEEEE
T ss_pred cceEEEEECCCCceEEee--cCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEEeeeCCCCcccccce
Confidence 468999999998765444 3556789999999 99999887753 25666666544322111111 1122333
Q ss_pred EeCCCEEEEEeCCCeEEEEECCCCEEEEEEecCCCceEEEeecCCEEEEEeC-C----CeEEEEECcCCeEE--EEecCC
Q psy3053 805 WAGEEKVILGGALGMVYLVDLIQVQLLKQVRAHKDAVLSLHFDNCTMLVGCW-D----SCVVIYDVECGRIV--TELAGH 877 (917)
Q Consensus 805 ~s~~~~lv~gs~dG~I~vwdl~~~~~i~~l~~h~~~V~sis~dg~~Lasgs~-D----G~I~Iwdl~tg~~l--~~l~~h 877 (917)
| +|||+.|+..+. + +.|++||+.+++.. ..+.++
T Consensus 245 ~---------------------------------------spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~ 285 (388)
T 3pe7_A 245 W---------------------------------------VPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPAC 285 (388)
T ss_dssp E---------------------------------------CTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCE
T ss_pred E---------------------------------------CCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCc
Confidence 3 445554433222 1 13667777666532 222221
Q ss_pred CCC---EEEEEEcCCCCEEEEE---------eCCCcEEEEecCcceEEEEe
Q psy3053 878 EDA---ISCVAWDEKRKRLISG---------NLVGAPKLYATEFYLLYVLT 916 (917)
Q Consensus 878 ~~~---V~slafSpdg~~LaSg---------s~DG~V~IWdl~~~ll~~Lt 916 (917)
... ...++|+|||+.|+.. +.++.|++||+++..+..++
T Consensus 286 ~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~ 336 (388)
T 3pe7_A 286 SHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQHRVA 336 (388)
T ss_dssp EEEEECTTSSEEEEEECCC------------CCCCEEEEEETTTTEEEEEE
T ss_pred eeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCceEEec
Confidence 100 1113689999988754 45678999999887665553
No 180
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.62 E-value=3.5e-13 Score=144.94 Aligned_cols=242 Identities=10% Similarity=0.108 Sum_probs=174.8
Q ss_pred ccCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEe-CCCCEEEEEEC-CCeEE
Q psy3053 661 AGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAIS-KDNNQLAVGTE-AGELI 738 (917)
Q Consensus 661 ~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~s-pdg~~Lasgs~-dG~I~ 738 (917)
.++-..+.+++++++++.+++.+.++.|.+||...... ...........+...+.+++++ +++.++++... ++.|.
T Consensus 26 ~g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~g~~~--~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~ 103 (286)
T 1q7f_A 26 EGQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKEGRFK--FQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQ 103 (286)
T ss_dssp TTCBSCEEEEEECTTCCEEEEEGGGTEEEEECTTSCEE--EEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEE
T ss_pred CCccCCCceEEECCCCCEEEEECCCCEEEEECCCCcEE--EEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEE
Confidence 34667789999999999888888899999999763210 0000000001233568899995 66666666543 78999
Q ss_pred EEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeEEEEeec---CCceEEEEEeCCCEEEEEe
Q psy3053 739 IWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCNKVF---EEKLLCLSWAGEEKVILGG 815 (917)
Q Consensus 739 iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~tg~~i~~~~~---~~~i~~l~~s~~~~lv~gs 815 (917)
+|| .+++.+..+...+...+.+++++++|+.+++...++.|.+||.. ++.+..... ...+.++++++++.+++++
T Consensus 104 ~~d-~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~ 181 (286)
T 1q7f_A 104 IYN-QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIFISD 181 (286)
T ss_dssp EEC-TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEEEEEE
T ss_pred EEC-CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCC-CCEEEEeCCCCccCCcEEEEECCCCCEEEEE
Confidence 999 56677766654455678999999999988877788999999964 555555432 2458899999988776664
Q ss_pred -CCCeEEEEECCCCEEEEEEecC--CCceEEE--eecCCEEEEEeCCC-eEEEEECcCCeEEEEecCCCC--CEEEEEEc
Q psy3053 816 -ALGMVYLVDLIQVQLLKQVRAH--KDAVLSL--HFDNCTMLVGCWDS-CVVIYDVECGRIVTELAGHED--AISCVAWD 887 (917)
Q Consensus 816 -~dG~I~vwdl~~~~~i~~l~~h--~~~V~si--s~dg~~Lasgs~DG-~I~Iwdl~tg~~l~~l~~h~~--~V~slafS 887 (917)
.++.|.+||. +++.+..+..+ ...+.++ +++|+++++...++ .|.+|+. +++.+..+..+.. .+.+++++
T Consensus 182 ~~~~~i~~~~~-~g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~~i~~~ 259 (286)
T 1q7f_A 182 NRAHCVKVFNY-EGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESKVKHAQCFDVALM 259 (286)
T ss_dssp GGGTEEEEEET-TCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEESSCCSCEEEEEEE
T ss_pred CCCCEEEEEcC-CCCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECC-CCCEEEEEcccCCCCcceeEEEC
Confidence 5789999997 45566666443 2456666 56788888887776 9999995 5677776655433 47899999
Q ss_pred CCCCEEEEEeCCCcEEEEecCc
Q psy3053 888 EKRKRLISGNLVGAPKLYATEF 909 (917)
Q Consensus 888 pdg~~LaSgs~DG~V~IWdl~~ 909 (917)
|+|+.+++ +.|+.|++|++..
T Consensus 260 ~~g~l~vs-~~~~~v~v~~~~~ 280 (286)
T 1q7f_A 260 DDGSVVLA-SKDYRLYIYRYVQ 280 (286)
T ss_dssp TTTEEEEE-ETTTEEEEEECSC
T ss_pred CCCcEEEE-CCCCeEEEEEccc
Confidence 99987777 6799999999864
No 181
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.61 E-value=1.4e-13 Score=151.37 Aligned_cols=267 Identities=11% Similarity=0.083 Sum_probs=188.9
Q ss_pred cceEEEEEeCCCcEEEEEecCCceEEEeccCCceeeeeeccccceEEEEEeCCCCEEEEEecccEEEEEEeccCeeeEEe
Q psy3053 581 EAITAVAICGEGISVASVGRDAMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTMLVGCWDSCVVIYDVECGRIVTEL 660 (917)
Q Consensus 581 ~~Vtsv~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~~~~~~~~V~sl~~spd~~~Lasgs~Dg~I~Iwdl~tg~~i~~l 660 (917)
..|.+++|++++..++..+.++.++.| .++....+..+...+.+++|++++++++++..++.|.+||.++++.....
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~ 82 (333)
T 2dg1_A 6 QDLPTLFYSGKSNSAVPIISESELQTI---TAEPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPF 82 (333)
T ss_dssp CCCCBCCSCGGGGCSSCCCCGGGSCEE---ECEEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEE
T ss_pred cccceeeecCCccceeEEeecccCccc---ccceeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEe
Confidence 457788899998888777888999999 34455555556666789999999998888888999999999988776655
Q ss_pred ccCCCceeEEEecCCCCEEEEEECC----CeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEEEEC---
Q psy3053 661 AGHEDAISCVAWDEKRKRLISGSWD----CTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTE--- 733 (917)
Q Consensus 661 ~~H~~~Vt~l~~spd~~~L~Sgs~D----gtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~--- 733 (917)
..+...+.++++++++++++++..+ +.|.+||..++... ...........+.+++++|+|+++++...
T Consensus 83 ~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~-----~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~ 157 (333)
T 2dg1_A 83 VSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQ-----DIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYS 157 (333)
T ss_dssp ECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCE-----EEECSSSSCCCEEEEEECTTSCEEEEECCCBT
T ss_pred eCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEE-----EEEccCccCCcccceEECCCCCEEEEeccccc
Confidence 4567889999999999888877666 68999998765211 01111124467899999999987776653
Q ss_pred ---CCeEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEE-eCCCeEEEEECCC-CeEEEE------eecC--Cce
Q psy3053 734 ---AGELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSC-GNNCMLNVYDLTT-GMQVCN------KVFE--EKL 800 (917)
Q Consensus 734 ---dG~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~-s~Dg~I~iwDl~t-g~~i~~------~~~~--~~i 800 (917)
.+.|..+|..+++...... ....+..++|+|+|+.++.+ +.++.|.+||..+ +..... .... ..+
T Consensus 158 ~~~~~~l~~~~~~~~~~~~~~~--~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~~~ 235 (333)
T 2dg1_A 158 TNPLGGVYYVSPDFRTVTPIIQ--NISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGP 235 (333)
T ss_dssp TBCCEEEEEECTTSCCEEEEEE--EESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEE
T ss_pred cCCCceEEEEeCCCCEEEEeec--CCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCCCCC
Confidence 3667777776655433222 23457899999999866554 4578999999863 322111 1122 357
Q ss_pred EEEEEeCCCEEEEEe-CCCeEEEEECCCCEEEEEEecCCC------ceEEE--eecCCEEEEEeCCC
Q psy3053 801 LCLSWAGEEKVILGG-ALGMVYLVDLIQVQLLKQVRAHKD------AVLSL--HFDNCTMLVGCWDS 858 (917)
Q Consensus 801 ~~l~~s~~~~lv~gs-~dG~I~vwdl~~~~~i~~l~~h~~------~V~si--s~dg~~Lasgs~DG 858 (917)
..+++++++.+.+++ .++.|.+||. +++.+..+..+.. .+.++ +++++.|++++.+|
T Consensus 236 ~~i~~d~~G~l~v~~~~~~~v~~~d~-~g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~g 301 (333)
T 2dg1_A 236 DSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSNDI 301 (333)
T ss_dssp EEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEECG
T ss_pred CceEECCCCCEEEEEcCCCEEEEECC-CCCEEEEEEcCCCccccccCcceEEECCCCCEEEEEeCcc
Confidence 789999887776655 5689999998 5666666654432 35555 56777777666553
No 182
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.60 E-value=2.4e-13 Score=150.16 Aligned_cols=238 Identities=11% Similarity=0.023 Sum_probs=177.0
Q ss_pred CcceEEEEEeCCCcEEEEEecC------------------------CceEEEeccCCceeeeee-ccccceEEEEEeCCC
Q psy3053 580 KEAITAVAICGEGISVASVGRD------------------------AMLKIHSLKTGRQERSAV-LSSMTLSSLCILPDN 634 (917)
Q Consensus 580 ~~~Vtsv~fSpdg~~Lasgs~D------------------------g~I~IWd~~t~~~~~~~~-~~~~~V~sl~~spd~ 634 (917)
-+.|.+|+++++|+++++.+.+ +.|.+||..+++...... .+-.....+++++++
T Consensus 23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g 102 (329)
T 3fvz_A 23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDG 102 (329)
T ss_dssp CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTS
T ss_pred cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCCC
Confidence 3679999999999988888777 479999998888766544 233467889999999
Q ss_pred CEEEEEecccEEEEEEeccCe-eeEEe---------ccCCCceeEEEecC-CCCEEEEEE-CCCeEEEEeCCCCCCCccC
Q psy3053 635 CTMLVGCWDSCVVIYDVECGR-IVTEL---------AGHEDAISCVAWDE-KRKRLISGS-WDCTVRVWNTGASWSHMKP 702 (917)
Q Consensus 635 ~~Lasgs~Dg~I~Iwdl~tg~-~i~~l---------~~H~~~Vt~l~~sp-d~~~L~Sgs-~DgtI~vWdl~~~~~~~~~ 702 (917)
+++++.+.++.|++|+.+... .+..+ .++......++++| ++..+++.+ .++.|++|+....
T Consensus 103 ~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~~g~------ 176 (329)
T 3fvz_A 103 NYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSPSGK------ 176 (329)
T ss_dssp CEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEECTTSC------
T ss_pred CEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEcCCCC------
Confidence 988888889999999986442 44444 34555789999999 788888876 6999999995432
Q ss_pred Ccceeeec----------cCCCceEEEEEeCC-CCEEEEEECCCeEEEEECCCCeeeEEecC-CCCCCeEEEEEecCCCE
Q psy3053 703 SKSLVSQL----------DLDNRIKCLAISKD-NNQLAVGTEAGELIIWSLENHLMTQQLSD-DINASVNGVLFSEDGCR 770 (917)
Q Consensus 703 ~~~~~~~~----------~h~~~V~~l~~spd-g~~Lasgs~dG~I~iwDl~~~~~~~~l~~-~h~~~V~~v~fspdg~~ 770 (917)
...... .+-..+..++++|+ +.++++...++.|.+||..+++.+..+.. .+...+.+++++| +..
T Consensus 177 --~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~p-g~~ 253 (329)
T 3fvz_A 177 --FVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIP-GFL 253 (329)
T ss_dssp --EEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEET-TEE
T ss_pred --EEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecC-CEE
Confidence 111111 11234789999998 77777777889999999998888887752 3556788999999 433
Q ss_pred EEEE-------eCCCeEEEEECCCCeEEEEee----cCCceEEEEEeCCCEEE-EEeCCCeEEEEECC
Q psy3053 771 VLSC-------GNNCMLNVYDLTTGMQVCNKV----FEEKLLCLSWAGEEKVI-LGGALGMVYLVDLI 826 (917)
Q Consensus 771 L~s~-------s~Dg~I~iwDl~tg~~i~~~~----~~~~i~~l~~s~~~~lv-~gs~dG~I~vwdl~ 826 (917)
+++. ..+..+++||..+++.+..+. ....+..+++++++.++ +...++.|++|++.
T Consensus 254 ~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~ 321 (329)
T 3fvz_A 254 FAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLT 321 (329)
T ss_dssp EEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEEEE
T ss_pred EEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEEeCC
Confidence 3333 334589999999998887753 33457888998887654 44557788888864
No 183
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.60 E-value=5.7e-12 Score=135.33 Aligned_cols=279 Identities=6% Similarity=-0.051 Sum_probs=194.4
Q ss_pred ccCCcceEEEEEeCCCcEEEEEecCCceEEEeccCCceeeee-eccccceEEEEEeCCCCEEEEEecccEEEEEEeccCe
Q psy3053 577 HSHKEAITAVAICGEGISVASVGRDAMLKIHSLKTGRQERSA-VLSSMTLSSLCILPDNCTMLVGCWDSCVVIYDVECGR 655 (917)
Q Consensus 577 ~~H~~~Vtsv~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~~-~~~~~~V~sl~~spd~~~Lasgs~Dg~I~Iwdl~tg~ 655 (917)
..+...+.+++++++|+..++...++.|.+||.. ++..... ......+.++++++++.+.++...++.|..|+.. ++
T Consensus 11 ~~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~ 88 (299)
T 2z2n_A 11 TNQDTGPYGITVSDKGKVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKK-GI 88 (299)
T ss_dssp CSSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SC
T ss_pred CCcCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCC-Cc
Confidence 4455789999999999977776668899999987 5443221 2234568899999999888877778899999976 43
Q ss_pred ee-EEeccCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEEEECC
Q psy3053 656 IV-TELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEA 734 (917)
Q Consensus 656 ~i-~~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~d 734 (917)
.. ..+......+.++++.+++..+++...++.|..||. ++. ............+.+++++++|++.++...+
T Consensus 89 ~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~------~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~ 161 (299)
T 2z2n_A 89 IKEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGK------IREYELPNKGSYPSFITLGSDNALWFTENQN 161 (299)
T ss_dssp EEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCC------EEEEECSSTTCCEEEEEECTTSCEEEEETTT
T ss_pred EEEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCC------EEEecCCCCCCCCceEEEcCCCCEEEEeCCC
Confidence 32 222234567899999999988888777889999997 331 0111112234568999999999888777777
Q ss_pred CeEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeEEEEeec---CCceEEEEEeCCCEE
Q psy3053 735 GELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCNKVF---EEKLLCLSWAGEEKV 811 (917)
Q Consensus 735 G~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~tg~~i~~~~~---~~~i~~l~~s~~~~l 811 (917)
+.|..||. +++............+.+++++++|...++...++.|.+||. ++.... ... ...+.++++++++.+
T Consensus 162 ~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~-~~~~~~~~~~~~i~~~~~g~l 238 (299)
T 2z2n_A 162 NAIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEITE-FKIPTPNARPHAITAGAGIDL 238 (299)
T ss_dssp TEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEE-EECSSTTCCEEEEEECSTTCE
T ss_pred CEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcEEE-EECCCCCCCceeEEECCCCCE
Confidence 89999999 666544322234567889999999987777667889999999 665433 222 356889999988887
Q ss_pred EEEe-CCCeEEEEECCCCEEEEE-EecCCCceEEEe-ecCCEEEEEeCCCeEEEEECcCCe
Q psy3053 812 ILGG-ALGMVYLVDLIQVQLLKQ-VRAHKDAVLSLH-FDNCTMLVGCWDSCVVIYDVECGR 869 (917)
Q Consensus 812 v~gs-~dG~I~vwdl~~~~~i~~-l~~h~~~V~sis-~dg~~Lasgs~DG~I~Iwdl~tg~ 869 (917)
.+++ .++.|..||. +++.... +..+...+.++. +++.+.+ ++..+.+..++.++++
T Consensus 239 ~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~g~l~v-~~~~~~l~~~~~~~~~ 297 (299)
T 2z2n_A 239 WFTEWGANKIGRLTS-NNIIEEYPIQIKSAEPHGICFDGETIWF-AMECDKIGKLTLIKDN 297 (299)
T ss_dssp EEEETTTTEEEEEET-TTEEEEEECSSSSCCEEEEEECSSCEEE-EETTTEEEEEEEC---
T ss_pred EEeccCCceEEEECC-CCceEEEeCCCCCCccceEEecCCCEEE-EecCCcEEEEEcCccc
Confidence 7776 6689999998 4543322 233445666664 3455444 4446777777776543
No 184
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.59 E-value=8.2e-14 Score=170.14 Aligned_cols=246 Identities=9% Similarity=-0.107 Sum_probs=168.7
Q ss_pred cCCCceeEEEecCCCCEEE-----EEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEEEECCCe
Q psy3053 662 GHEDAISCVAWDEKRKRLI-----SGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGE 736 (917)
Q Consensus 662 ~H~~~Vt~l~~spd~~~L~-----Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~dG~ 736 (917)
+|...+.+++|||||++|+ +|+.+.+|++||+.++.... ..... ......++|+|||+.|+.++.++.
T Consensus 118 ~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~------~~~~~-~~~~~~~~wspDg~~l~~~~~d~~ 190 (695)
T 2bkl_A 118 DGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSK------VDVIE-GGKYATPKWTPDSKGFYYEWLPTD 190 (695)
T ss_dssp SSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCS------SCCBS-CCTTCCCEECTTSSEEEEEECCCC
T ss_pred CCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcC------CcccC-cccccceEEecCCCEEEEEEecCC
Confidence 4566799999999999998 44445789999998873210 00011 111267999999999999988776
Q ss_pred -------------EEEEECCCCee--eEEec-CCCCCCeEEEEEecCCCEEEEEeCCC----eEEEEECCCCeEEEEeec
Q psy3053 737 -------------LIIWSLENHLM--TQQLS-DDINASVNGVLFSEDGCRVLSCGNNC----MLNVYDLTTGMQVCNKVF 796 (917)
Q Consensus 737 -------------I~iwDl~~~~~--~~~l~-~~h~~~V~~v~fspdg~~L~s~s~Dg----~I~iwDl~tg~~i~~~~~ 796 (917)
|++|++.++.. ..... ..+...+.++.|||||++|+.++.++ .|.+|+..++........
T Consensus 191 ~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~~l~~~ 270 (695)
T 2bkl_A 191 PSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDFRLLVKG 270 (695)
T ss_dssp TTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSCEEEEEC
T ss_pred CCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCceEEeecC
Confidence 99999998762 12222 13456788999999999998887665 677887766654444444
Q ss_pred CCceEEEEEeCCCEEEEEeC----CCeEEEEECCCCEE---EEEEecC-CCceEEEee-cCCEEEEEeCCCeEEEEECc-
Q psy3053 797 EEKLLCLSWAGEEKVILGGA----LGMVYLVDLIQVQL---LKQVRAH-KDAVLSLHF-DNCTMLVGCWDSCVVIYDVE- 866 (917)
Q Consensus 797 ~~~i~~l~~s~~~~lv~gs~----dG~I~vwdl~~~~~---i~~l~~h-~~~V~sis~-dg~~Lasgs~DG~I~Iwdl~- 866 (917)
........+.+++ ++..+. ++.|.+||+.++.. ...+..+ ...+..+++ ++.+++++..||..++|.+.
T Consensus 271 ~~~~~~~~~~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~lv~~~~~dg~~~l~~~~~ 349 (695)
T 2bkl_A 271 VGAKYEVHAWKDR-FYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIVGGHLSLEYLKDATSEVRVATL 349 (695)
T ss_dssp SSCCEEEEEETTE-EEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEETTEEEEEEEETTEEEEEEEET
T ss_pred CCceEEEEecCCc-EEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEECCEEEEEEEECCEEEEEEEeC
Confidence 4445555555444 555443 58899999987652 2333333 445666655 56677888889988888665
Q ss_pred CCeEEEEecCC-CCCEEEEEEcCCCCEEEEE----eCCCcEEEEecCcceEEEE
Q psy3053 867 CGRIVTELAGH-EDAISCVAWDEKRKRLISG----NLVGAPKLYATEFYLLYVL 915 (917)
Q Consensus 867 tg~~l~~l~~h-~~~V~slafSpdg~~LaSg----s~DG~V~IWdl~~~ll~~L 915 (917)
+++....+..+ .+.|..++++|+++.++.. ...++|++||+.+.....+
T Consensus 350 ~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~~~~l 403 (695)
T 2bkl_A 350 KGKPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGKSELW 403 (695)
T ss_dssp TCCEEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCCEEEE
T ss_pred CCCeeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcEEEE
Confidence 46666667655 6678889999999877733 3457899999986544433
No 185
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.59 E-value=5.8e-13 Score=147.23 Aligned_cols=262 Identities=11% Similarity=-0.014 Sum_probs=190.2
Q ss_pred cccEEEEEEeccCeeeEEec------cCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCc
Q psy3053 642 WDSCVVIYDVECGRIVTELA------GHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNR 715 (917)
Q Consensus 642 ~Dg~I~Iwdl~tg~~i~~l~------~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~ 715 (917)
.+++|.++|.++++....+. ........+++. ++...++...++.|.+||..++ ...........
T Consensus 15 ~~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~--------~~~~~i~~~~~ 85 (328)
T 3dsm_A 15 SNATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIR-DGIGWIVVNNSHVIFAIDINTF--------KEVGRITGFTS 85 (328)
T ss_dssp CCBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEE-TTEEEEEEGGGTEEEEEETTTC--------CEEEEEECCSS
T ss_pred CCceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEE-CCEEEEEEcCCCEEEEEECccc--------EEEEEcCCCCC
Confidence 48899999999998766542 122446778775 3455566666899999999876 22222234567
Q ss_pred eEEEEEeCCCCEEEEEECCCeEEEEECCCCeeeEEecCCCC----CCeEEEEEecCCCEEEEEe--CCCeEEEEECCCCe
Q psy3053 716 IKCLAISKDNNQLAVGTEAGELIIWSLENHLMTQQLSDDIN----ASVNGVLFSEDGCRVLSCG--NNCMLNVYDLTTGM 789 (917)
Q Consensus 716 V~~l~~spdg~~Lasgs~dG~I~iwDl~~~~~~~~l~~~h~----~~V~~v~fspdg~~L~s~s--~Dg~I~iwDl~tg~ 789 (917)
...+++++++...++...++.|.+||+.+++....+..+.. .....+++ . +..+++++ .++.|.++|..+++
T Consensus 86 p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~-~-~~~lyv~~~~~~~~v~viD~~t~~ 163 (328)
T 3dsm_A 86 PRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ-Y-GKYVYVNCWSYQNRILKIDTETDK 163 (328)
T ss_dssp EEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE-E-TTEEEEEECTTCCEEEEEETTTTE
T ss_pred CcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE-E-CCEEEEEcCCCCCEEEEEECCCCe
Confidence 88999999985444444889999999999988877652221 14567777 3 44555554 48899999999999
Q ss_pred EEEEeecCCceEEEEEeCCCEEEEEeCC-----------CeEEEEECCCCEEEEEEecC-CCceEEE--eecCCEEEEEe
Q psy3053 790 QVCNKVFEEKLLCLSWAGEEKVILGGAL-----------GMVYLVDLIQVQLLKQVRAH-KDAVLSL--HFDNCTMLVGC 855 (917)
Q Consensus 790 ~i~~~~~~~~i~~l~~s~~~~lv~gs~d-----------G~I~vwdl~~~~~i~~l~~h-~~~V~si--s~dg~~Lasgs 855 (917)
.+...........+.+++++.+++++.. +.|.++|..+++....+... ......+ +++++.++++.
T Consensus 164 ~~~~i~~g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~ 243 (328)
T 3dsm_A 164 VVDELTIGIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWIN 243 (328)
T ss_dssp EEEEEECSSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEES
T ss_pred EEEEEEcCCCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEc
Confidence 8888877777788899998887777654 68999999999988777532 2234444 66789888876
Q ss_pred CCCeEEEEECcCCeEEEE--ecCCCCCEEEEEEcC-CCCEEEEE----eCCCcEEEEecCcceEEEEe
Q psy3053 856 WDSCVVIYDVECGRIVTE--LAGHEDAISCVAWDE-KRKRLISG----NLVGAPKLYATEFYLLYVLT 916 (917)
Q Consensus 856 ~DG~I~Iwdl~tg~~l~~--l~~h~~~V~slafSp-dg~~LaSg----s~DG~V~IWdl~~~ll~~Lt 916 (917)
. .|.+||..+++.... +..+.....+++++| ++...++. ..++.|.+|+.++.++..+.
T Consensus 244 ~--~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~g~~~~~i~ 309 (328)
T 3dsm_A 244 N--DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQGKLIDEFY 309 (328)
T ss_dssp S--SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTTCCEEEEEE
T ss_pred c--EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCCCCEEEEEE
Confidence 5 899999988876321 122245689999999 55555665 57899999999988888775
No 186
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.56 E-value=7.5e-13 Score=143.32 Aligned_cols=241 Identities=10% Similarity=-0.040 Sum_probs=174.1
Q ss_pred eeeccCCcceEEEEEeCCCc-EEEEEecCCceEEEeccCCceeeeeeccccceEEEEEeCCCCEEEEEecccEEEEEEec
Q psy3053 574 HFCHSHKEAITAVAICGEGI-SVASVGRDAMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTMLVGCWDSCVVIYDVE 652 (917)
Q Consensus 574 ~~l~~H~~~Vtsv~fSpdg~-~Lasgs~Dg~I~IWd~~t~~~~~~~~~~~~~V~sl~~spd~~~Lasgs~Dg~I~Iwdl~ 652 (917)
..+..+.....+++|+|+|+ +++++..++.|..|+..++ ...+..+...+.+++++++++++++...++.|.+||..
T Consensus 21 ~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~ 98 (296)
T 3e5z_A 21 RRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREP 98 (296)
T ss_dssp EEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEECST
T ss_pred EEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEcCC
Confidence 44455666788999999998 7778888999999999877 55566667778999999999988877778999999998
Q ss_pred cCeeeEEeccC----CCceeEEEecCCCCEEEEEEC-----------------CCeEEEEeCCCCCCCccCCcceeeecc
Q psy3053 653 CGRIVTELAGH----EDAISCVAWDEKRKRLISGSW-----------------DCTVRVWNTGASWSHMKPSKSLVSQLD 711 (917)
Q Consensus 653 tg~~i~~l~~H----~~~Vt~l~~spd~~~L~Sgs~-----------------DgtI~vWdl~~~~~~~~~~~~~~~~~~ 711 (917)
+++........ ...+.+++++|+|+++++.+. .+.|..++.. + .......
T Consensus 99 ~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g--------~~~~~~~ 169 (296)
T 3e5z_A 99 GGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-G--------TLSAPIR 169 (296)
T ss_dssp TCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-S--------CEEEEEC
T ss_pred CCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-C--------CEEEeec
Confidence 88765443322 234678999999998887431 2345555443 2 2222334
Q ss_pred CCCceEEEEEeCCCCEEEEEECCCeEEEEECC-CCee---eEEecCCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCC
Q psy3053 712 LDNRIKCLAISKDNNQLAVGTEAGELIIWSLE-NHLM---TQQLSDDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTT 787 (917)
Q Consensus 712 h~~~V~~l~~spdg~~Lasgs~dG~I~iwDl~-~~~~---~~~l~~~h~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~t 787 (917)
+......++|+|+++.+++.+.++.|.+|++. ++.. ...+ ..+...+.+++++++|++.++. ++.|.+||..
T Consensus 170 ~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~-~~~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~- 245 (296)
T 3e5z_A 170 DRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHF-TVEPGKTDGLRVDAGGLIWASA--GDGVHVLTPD- 245 (296)
T ss_dssp CCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEE-CCSSSCCCSEEEBTTSCEEEEE--TTEEEEECTT-
T ss_pred CCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEe-eCCCCCCCeEEECCCCCEEEEc--CCeEEEECCC-
Confidence 55667899999999988777778999999987 4544 3334 3455667889999999866655 7899999986
Q ss_pred CeEEEEeecCCceEEEEEe-CCC-EEEEEeCCCeEEEEECCCCEE
Q psy3053 788 GMQVCNKVFEEKLLCLSWA-GEE-KVILGGALGMVYLVDLIQVQL 830 (917)
Q Consensus 788 g~~i~~~~~~~~i~~l~~s-~~~-~lv~gs~dG~I~vwdl~~~~~ 830 (917)
++.+..+.....+.++++. +++ .+++++. +.+..++..+.+.
T Consensus 246 g~~~~~~~~~~~~~~~~f~~~d~~~L~v~t~-~~l~~~~~~~~~~ 289 (296)
T 3e5z_A 246 GDELGRVLTPQTTSNLCFGGPEGRTLYMTVS-TEFWSIETNVRGL 289 (296)
T ss_dssp SCEEEEEECSSCCCEEEEESTTSCEEEEEET-TEEEEEECSCCBC
T ss_pred CCEEEEEECCCCceeEEEECCCCCEEEEEcC-CeEEEEEcccccc
Confidence 6666666654448888884 554 4666655 4566667665543
No 187
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.56 E-value=1.8e-11 Score=131.31 Aligned_cols=276 Identities=3% Similarity=-0.070 Sum_probs=195.1
Q ss_pred cccceEEEEEeCCCCEEEEEecccEEEEEEeccCeeeEE-eccCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCC
Q psy3053 621 SSMTLSSLCILPDNCTMLVGCWDSCVVIYDVECGRIVTE-LAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSH 699 (917)
Q Consensus 621 ~~~~V~sl~~spd~~~Lasgs~Dg~I~Iwdl~tg~~i~~-l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~ 699 (917)
+...+.+++++++++..++...++.|.+||.. ++.... ...+...+.++++++++...++...++.|..||....
T Consensus 13 ~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~--- 88 (299)
T 2z2n_A 13 QDTGPYGITVSDKGKVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKKGI--- 88 (299)
T ss_dssp SSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTTSC---
T ss_pred cCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCCCc---
Confidence 34567899999999877776668999999988 654332 2335577999999999988887777889999997522
Q ss_pred ccCCcceeeeccCCCceEEEEEeCCCCEEEEEECCCeEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEEeCCCe
Q psy3053 700 MKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCGNNCM 779 (917)
Q Consensus 700 ~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~dG~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~Dg~ 779 (917)
............+.+++++++|.+.++...++.|..||. +++............+.+++++++|...++...++.
T Consensus 89 ----~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~ 163 (299)
T 2z2n_A 89 ----IKEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNALWFTENQNNA 163 (299)
T ss_dssp ----EEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTE
T ss_pred ----EEEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCCEEEEeCCCCE
Confidence 111111124557899999999988887777889999998 555443332234567899999999988777777789
Q ss_pred EEEEECCCCeEEEE-e-ecCCceEEEEEeCCCEEEEEe-CCCeEEEEECCCCEEEEE-EecCCCceEEE--eecCCEEEE
Q psy3053 780 LNVYDLTTGMQVCN-K-VFEEKLLCLSWAGEEKVILGG-ALGMVYLVDLIQVQLLKQ-VRAHKDAVLSL--HFDNCTMLV 853 (917)
Q Consensus 780 I~iwDl~tg~~i~~-~-~~~~~i~~l~~s~~~~lv~gs-~dG~I~vwdl~~~~~i~~-l~~h~~~V~si--s~dg~~Las 853 (917)
|..||. +++.... . .....+.++++++++.+.+++ .++.|.+||. +++.... ...+...+.++ +++|+..++
T Consensus 164 i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~ 241 (299)
T 2z2n_A 164 IGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEITEFKIPTPNARPHAITAGAGIDLWFT 241 (299)
T ss_dssp EEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEE
T ss_pred EEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcEEEEECCCCCCCceeEEECCCCCEEEe
Confidence 999998 6655432 1 123457889999877776665 4689999999 6654332 23344567777 456776666
Q ss_pred EeCCCeEEEEECcCCeEEEE-ecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcc
Q psy3053 854 GCWDSCVVIYDVECGRIVTE-LAGHEDAISCVAWDEKRKRLISGNLVGAPKLYATEFY 910 (917)
Q Consensus 854 gs~DG~I~Iwdl~tg~~l~~-l~~h~~~V~slafSpdg~~LaSgs~DG~V~IWdl~~~ 910 (917)
...++.|..||. +++.... +..+...+.++++ ++|...++.+ .+.+..++.+..
T Consensus 242 ~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~-~~g~l~v~~~-~~~l~~~~~~~~ 296 (299)
T 2z2n_A 242 EWGANKIGRLTS-NNIIEEYPIQIKSAEPHGICF-DGETIWFAME-CDKIGKLTLIKD 296 (299)
T ss_dssp ETTTTEEEEEET-TTEEEEEECSSSSCCEEEEEE-CSSCEEEEET-TTEEEEEEEC--
T ss_pred ccCCceEEEECC-CCceEEEeCCCCCCccceEEe-cCCCEEEEec-CCcEEEEEcCcc
Confidence 557889999998 4554322 3445567999999 8888777655 566777777654
No 188
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.56 E-value=1.8e-12 Score=158.60 Aligned_cols=241 Identities=15% Similarity=0.095 Sum_probs=169.7
Q ss_pred cceEEEEEeCCCCEEEEEeccc-----EEEEEEeccCeeeEEeccCCCceeEEEecCCCCEEEEEECCCe----------
Q psy3053 623 MTLSSLCILPDNCTMLVGCWDS-----CVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGSWDCT---------- 687 (917)
Q Consensus 623 ~~V~sl~~spd~~~Lasgs~Dg-----~I~Iwdl~tg~~i~~l~~H~~~Vt~l~~spd~~~L~Sgs~Dgt---------- 687 (917)
..+..++|||||++||.++.++ .|++||+.+|+.......+ ..+.+++|+|||+.|+.++.++.
T Consensus 125 ~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~-~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~ 203 (710)
T 2xdw_A 125 VALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER-VKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETS 203 (710)
T ss_dssp EEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE-ECSCCEEECTTSSEEEEEECCCCSSCCSSSCCC
T ss_pred EEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccC-cccceEEEEeCCCEEEEEEECCccccccccccc
Confidence 3578899999999999876644 8999999999877643322 23678999999999999998876
Q ss_pred ------EEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEEEEC-----CCeEEEEECCC------Ce-eeE
Q psy3053 688 ------VRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTE-----AGELIIWSLEN------HL-MTQ 749 (917)
Q Consensus 688 ------I~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~-----dG~I~iwDl~~------~~-~~~ 749 (917)
|.+|++.++... ...+.....+...+..++|+|+|+.|+.++. +..|.+||+.+ +. ...
T Consensus 204 ~~~~~~v~~~~l~t~~~~---~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~ 280 (710)
T 2xdw_A 204 TNLHQKLYYHVLGTDQSE---DILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWV 280 (710)
T ss_dssp CCCCCEEEEEETTSCGGG---CEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCE
T ss_pred cCCCCEEEEEECCCCccc---ceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceE
Confidence 999999765210 0011112224556789999999999988765 56899999986 43 344
Q ss_pred EecCCCCCCeEEEEEecCCCEEEEEeCC----CeEEEEECCCCeE---EEEeecCC--ceEEEEEeCCCE-EEEEeCCC-
Q psy3053 750 QLSDDINASVNGVLFSEDGCRVLSCGNN----CMLNVYDLTTGMQ---VCNKVFEE--KLLCLSWAGEEK-VILGGALG- 818 (917)
Q Consensus 750 ~l~~~h~~~V~~v~fspdg~~L~s~s~D----g~I~iwDl~tg~~---i~~~~~~~--~i~~l~~s~~~~-lv~gs~dG- 818 (917)
.+. .+...+.. .|+|+|..|+..+.. +.|.+||+.++.. .....+.. .+..+++.+++. ++++..++
T Consensus 281 ~l~-~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~ 358 (710)
T 2xdw_A 281 KLI-DNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVK 358 (710)
T ss_dssp EEE-CSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTE
T ss_pred Eee-CCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEEEEEECCE
Confidence 454 34444444 588999988877653 3699999987641 22223322 577888885555 45566666
Q ss_pred -eEEEEECCCCEEEEEEecCCCceEEE--eecCCEEEEE-e---CCCeEEEEECcCCe
Q psy3053 819 -MVYLVDLIQVQLLKQVRAHKDAVLSL--HFDNCTMLVG-C---WDSCVVIYDVECGR 869 (917)
Q Consensus 819 -~I~vwdl~~~~~i~~l~~h~~~V~si--s~dg~~Lasg-s---~DG~I~Iwdl~tg~ 869 (917)
.|.+|++.+++.+..+..+.+.+..+ ++++..++.. + ..++|+.||+.+++
T Consensus 359 ~~l~~~~~~~g~~~~~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 359 NTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp EEEEEEETTTCCEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred EEEEEEECCCCCEEEecCCCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 46777887888878888787777777 4577665543 2 34789999998876
No 189
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.55 E-value=8.8e-13 Score=161.37 Aligned_cols=240 Identities=13% Similarity=0.038 Sum_probs=164.5
Q ss_pred CCCceeEEEecCCCCEEEEEECCC-----eEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEEEECCCe-
Q psy3053 663 HEDAISCVAWDEKRKRLISGSWDC-----TVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGE- 736 (917)
Q Consensus 663 H~~~Vt~l~~spd~~~L~Sgs~Dg-----tI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~dG~- 736 (917)
|...+..++|||||++|+.++.++ +|++||+.++. ..........+.+++|+|||+.|+.++.++.
T Consensus 123 ~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~--------~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~ 194 (710)
T 2xdw_A 123 GTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAK--------ELPDVLERVKFSCMAWTHDGKGMFYNAYPQQD 194 (710)
T ss_dssp SCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTE--------EEEEEEEEECSCCEEECTTSSEEEEEECCCCS
T ss_pred CCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCC--------CCcccccCcccceEEEEeCCCEEEEEEECCcc
Confidence 445688999999999998776543 89999998762 1111111223678999999999999988766
Q ss_pred ---------------EEEEECCCCeee--EEec-CCCCCCeEEEEEecCCCEEEEEeC-----CCeEEEEECCC------
Q psy3053 737 ---------------LIIWSLENHLMT--QQLS-DDINASVNGVLFSEDGCRVLSCGN-----NCMLNVYDLTT------ 787 (917)
Q Consensus 737 ---------------I~iwDl~~~~~~--~~l~-~~h~~~V~~v~fspdg~~L~s~s~-----Dg~I~iwDl~t------ 787 (917)
|++|++.++... .... ..+...+..+.|+|||++|+.++. +..|++||+.+
T Consensus 195 ~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~ 274 (710)
T 2xdw_A 195 GKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGIT 274 (710)
T ss_dssp SCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSC
T ss_pred ccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccC
Confidence 999999887632 2222 124556889999999999988765 56899999976
Q ss_pred C--eEEEEeecCCceEEEEEeC-CCEEEEEeCC----CeEEEEECCCCE--EEEEEecCCC--ceEEEee--cCCEEEEE
Q psy3053 788 G--MQVCNKVFEEKLLCLSWAG-EEKVILGGAL----GMVYLVDLIQVQ--LLKQVRAHKD--AVLSLHF--DNCTMLVG 854 (917)
Q Consensus 788 g--~~i~~~~~~~~i~~l~~s~-~~~lv~gs~d----G~I~vwdl~~~~--~i~~l~~h~~--~V~sis~--dg~~Lasg 854 (917)
+ .............. .+++ .+.++..+.. +.|.+||+.++. ....+..|.. .+..+.+ ++.+++++
T Consensus 275 ~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~ 353 (710)
T 2xdw_A 275 GILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCY 353 (710)
T ss_dssp SSCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEE
T ss_pred CccceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEEEE
Confidence 4 22222223333333 2333 2355554443 469999998764 2244444544 5666644 55667778
Q ss_pred eCCCe--EEEEECcCCeEEEEecCCCCCEEEEEEcCCCCEEEEE-e---CCCcEEEEecCcce
Q psy3053 855 CWDSC--VVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISG-N---LVGAPKLYATEFYL 911 (917)
Q Consensus 855 s~DG~--I~Iwdl~tg~~l~~l~~h~~~V~slafSpdg~~LaSg-s---~DG~V~IWdl~~~l 911 (917)
..||. |.+|++.+|+.+..+..+.+.|.+++++|++..++.. + ..++|..||+.+..
T Consensus 354 ~~~g~~~l~~~~~~~g~~~~~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 354 LHDVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp EETTEEEEEEEETTTCCEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred EECCEEEEEEEECCCCCEEEecCCCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 88884 5667777788888888888889999999999876633 2 45789999987543
No 190
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.53 E-value=3.2e-13 Score=164.92 Aligned_cols=273 Identities=11% Similarity=-0.025 Sum_probs=178.9
Q ss_pred eCCCcEEEEEecCC---ceEEEecc--CCceeeeee------ccccceEEEEEeCCCCEEEE-----EecccEEEEEEec
Q psy3053 589 CGEGISVASVGRDA---MLKIHSLK--TGRQERSAV------LSSMTLSSLCILPDNCTMLV-----GCWDSCVVIYDVE 652 (917)
Q Consensus 589 Spdg~~Lasgs~Dg---~I~IWd~~--t~~~~~~~~------~~~~~V~sl~~spd~~~Las-----gs~Dg~I~Iwdl~ 652 (917)
+|+|++++....++ .-.+|... .+.....+. .|...+.+++|||||++||. |+.+..|++||+.
T Consensus 76 ~~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~ 155 (695)
T 2bkl_A 76 SRRNGRFFYVRTHKDKEKAILYWRQGESGQEKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVD 155 (695)
T ss_dssp EEETTEEEEEEECTTCSSCEEEEEESTTSCCEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETT
T ss_pred EEECCEEEEEEEcCCCeEEEEEEEcCCCCCcEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECC
Confidence 47788877766544 34555543 343222221 23346889999999999984 3445689999999
Q ss_pred cCeeeEEeccCCCce--eEEEecCCCCEEEEEECCCe-------------EEEEeCCCCCCCccCCcceeeeccCCCceE
Q psy3053 653 CGRIVTELAGHEDAI--SCVAWDEKRKRLISGSWDCT-------------VRVWNTGASWSHMKPSKSLVSQLDLDNRIK 717 (917)
Q Consensus 653 tg~~i~~l~~H~~~V--t~l~~spd~~~L~Sgs~Dgt-------------I~vWdl~~~~~~~~~~~~~~~~~~h~~~V~ 717 (917)
+|+.+. ..+...+ ..++|+|||+.|+.++.|.. |.+|++.++... ...+.....+...+.
T Consensus 156 tg~~~~--~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~---~~lv~~~~~~~~~~~ 230 (695)
T 2bkl_A 156 SGEWSK--VDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSK---DTVVHERTGDPTTFL 230 (695)
T ss_dssp TCCBCS--SCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGG---CEEEECCCCCTTCEE
T ss_pred CCCCcC--CcccCcccccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchh---ceEEEecCCCCEEEE
Confidence 998651 1122223 68999999999999998876 999999876211 011112223456788
Q ss_pred EEEEeCCCCEEEEEECCC----eEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEEeC----CCeEEEEECCCCe
Q psy3053 718 CLAISKDNNQLAVGTEAG----ELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCGN----NCMLNVYDLTTGM 789 (917)
Q Consensus 718 ~l~~spdg~~Lasgs~dG----~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~----Dg~I~iwDl~tg~ 789 (917)
++.|+|+|++|++++.++ .|.+++..++... .+. .+...+....+ ++|. ++..+. ++.|.+||+.++.
T Consensus 231 ~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~-~l~-~~~~~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~ 306 (695)
T 2bkl_A 231 QSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDFR-LLV-KGVGAKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPA 306 (695)
T ss_dssp EEEECTTSCCEEEEEEETTTEEEEEEECTTCSSCE-EEE-ECSSCCEEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCS
T ss_pred EEEECCCCCEEEEEEeCCCCceEEEEEcCCCCceE-Eee-cCCCceEEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCC
Confidence 999999999998887666 6778877665433 333 23445555556 5666 544443 5789999998764
Q ss_pred E---EEEeec--CCceEEEEEeCCCEEEEEeCCCeEEEEECC-CCEEEEEEecC-CCceEEE--eecCCEEEEEe----C
Q psy3053 790 Q---VCNKVF--EEKLLCLSWAGEEKVILGGALGMVYLVDLI-QVQLLKQVRAH-KDAVLSL--HFDNCTMLVGC----W 856 (917)
Q Consensus 790 ~---i~~~~~--~~~i~~l~~s~~~~lv~gs~dG~I~vwdl~-~~~~i~~l~~h-~~~V~si--s~dg~~Lasgs----~ 856 (917)
. ...... ...+..++++++..+++...++..++|.+. +++....+..+ .+.+..+ +++++.++... .
T Consensus 307 ~~~~~~l~~~~~~~~l~~~~~~~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~ 386 (695)
T 2bkl_A 307 RASWKEIVPEDSSASLLSVSIVGGHLSLEYLKDATSEVRVATLKGKPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTT 386 (695)
T ss_dssp GGGCEEEECCCSSCEEEEEEEETTEEEEEEEETTEEEEEEEETTCCEEEECCCSSSSEECCCBSCTTCSEEEEEEEETTE
T ss_pred ccCCeEEecCCCCCeEEEEEEECCEEEEEEEECCEEEEEEEeCCCCeeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCC
Confidence 2 222222 345777888866566777888887777554 45556666554 5555555 56777766333 3
Q ss_pred CCeEEEEECcCCeE
Q psy3053 857 DSCVVIYDVECGRI 870 (917)
Q Consensus 857 DG~I~Iwdl~tg~~ 870 (917)
.++|++||+.+++.
T Consensus 387 P~~v~~~d~~~g~~ 400 (695)
T 2bkl_A 387 PRQIYKTSVSTGKS 400 (695)
T ss_dssp EEEEEEEETTTCCE
T ss_pred CCEEEEEECCCCcE
Confidence 47899999988774
No 191
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.52 E-value=3e-12 Score=138.58 Aligned_cols=240 Identities=8% Similarity=-0.041 Sum_probs=171.6
Q ss_pred eeeccccceEEEEEeCCCC-EEEEEecccEEEEEEeccCeeeEEeccCCCceeEEEecCCCCEEEEEECCCeEEEEeCCC
Q psy3053 617 SAVLSSMTLSSLCILPDNC-TMLVGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGA 695 (917)
Q Consensus 617 ~~~~~~~~V~sl~~spd~~-~Lasgs~Dg~I~Iwdl~tg~~i~~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~ 695 (917)
.+..+.....+++|+|+++ +++++..++.|..|+..++ ...+..+...+.+++++++++++++.+.++.|.+||..+
T Consensus 22 ~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~ 99 (296)
T 3e5z_A 22 RLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREPG 99 (296)
T ss_dssp EEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEECSTT
T ss_pred EEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEcCCC
Confidence 3333444567899999998 7788888999999999887 566667778899999999999888777778999999866
Q ss_pred CCCCccCCcceeee--ccCCCceEEEEEeCCCCEEEEE----E-------------CCCeEEEEECCCCeeeEEecCCCC
Q psy3053 696 SWSHMKPSKSLVSQ--LDLDNRIKCLAISKDNNQLAVG----T-------------EAGELIIWSLENHLMTQQLSDDIN 756 (917)
Q Consensus 696 ~~~~~~~~~~~~~~--~~h~~~V~~l~~spdg~~Lasg----s-------------~dG~I~iwDl~~~~~~~~l~~~h~ 756 (917)
+... ..... ......+..++++|+|+++++. + ..+.|..++.. ++.. .+. .+.
T Consensus 100 g~~~-----~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~-~~~-~~~ 171 (296)
T 3e5z_A 100 GEWE-----SIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLS-API-RDR 171 (296)
T ss_dssp CCEE-----EEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEE-EEE-CCC
T ss_pred CcEE-----EEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCEE-Eee-cCC
Confidence 5210 11000 0112346789999999988873 3 13467677665 4433 333 355
Q ss_pred CCeEEEEEecCCCEEEEEeCCCeEEEEECC-CCeE---EEEe-ecCCceEEEEEeCCCEEEEEeCCCeEEEEECCCCEEE
Q psy3053 757 ASVNGVLFSEDGCRVLSCGNNCMLNVYDLT-TGMQ---VCNK-VFEEKLLCLSWAGEEKVILGGALGMVYLVDLIQVQLL 831 (917)
Q Consensus 757 ~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~-tg~~---i~~~-~~~~~i~~l~~s~~~~lv~gs~dG~I~vwdl~~~~~i 831 (917)
.....++|+|+|+.+++.+.++.|.+|++. ++.. .... .....+.++++++++.+.+++ ++.|.+||.. ++.+
T Consensus 172 ~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~-~~~v~~~~~~-g~~~ 249 (296)
T 3e5z_A 172 VKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA-GDGVHVLTPD-GDEL 249 (296)
T ss_dssp SSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE-TTEEEEECTT-SCEE
T ss_pred CCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc-CCeEEEECCC-CCEE
Confidence 678899999999999777778999999986 5544 1122 123446788999998888888 8999999986 7777
Q ss_pred EEEecCCCceEEEe---ecCCEEEEEeCCCeEEEEECcCCeE
Q psy3053 832 KQVRAHKDAVLSLH---FDNCTMLVGCWDSCVVIYDVECGRI 870 (917)
Q Consensus 832 ~~l~~h~~~V~sis---~dg~~Lasgs~DG~I~Iwdl~tg~~ 870 (917)
..+..+.. +.++. ++++.|++++.++ +.-++..+.+.
T Consensus 250 ~~~~~~~~-~~~~~f~~~d~~~L~v~t~~~-l~~~~~~~~~~ 289 (296)
T 3e5z_A 250 GRVLTPQT-TSNLCFGGPEGRTLYMTVSTE-FWSIETNVRGL 289 (296)
T ss_dssp EEEECSSC-CCEEEEESTTSCEEEEEETTE-EEEEECSCCBC
T ss_pred EEEECCCC-ceeEEEECCCCCEEEEEcCCe-EEEEEcccccc
Confidence 78877666 66653 5778888888764 55556655543
No 192
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.51 E-value=2.7e-12 Score=141.82 Aligned_cols=269 Identities=10% Similarity=0.072 Sum_probs=185.8
Q ss_pred cCCceEEEeccCCceeeeeec------cccceEEEEEeCCCCEEEEEecccEEEEEEeccCeeeEEeccCCCceeEEEec
Q psy3053 600 RDAMLKIHSLKTGRQERSAVL------SSMTLSSLCILPDNCTMLVGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWD 673 (917)
Q Consensus 600 ~Dg~I~IWd~~t~~~~~~~~~------~~~~V~sl~~spd~~~Lasgs~Dg~I~Iwdl~tg~~i~~l~~H~~~Vt~l~~s 673 (917)
.+++|.++|.++++....+.. .......+++. +++..++...++.|.+||..+++.+.++. .......++++
T Consensus 15 ~~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~-~~~~p~~i~~~ 92 (328)
T 3dsm_A 15 SNATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRIT-GFTSPRYIHFL 92 (328)
T ss_dssp CCBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEE-CCSSEEEEEEE
T ss_pred CCceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEcC-CCCCCcEEEEe
Confidence 378999999999887655421 11234566664 45555666668999999999999988885 34678899998
Q ss_pred CCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCC------ceEEEEEeCCCCEEEEEE--CCCeEEEEECCCC
Q psy3053 674 EKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDN------RIKCLAISKDNNQLAVGT--EAGELIIWSLENH 745 (917)
Q Consensus 674 pd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~------~V~~l~~spdg~~Lasgs--~dG~I~iwDl~~~ 745 (917)
+++...++...++.|.+||..+.. ......... ....+++ ++..+.+++ .++.|.++|+.++
T Consensus 93 ~~g~lyv~~~~~~~v~~iD~~t~~--------~~~~i~~g~~~~~~~~p~~i~~--~~~~lyv~~~~~~~~v~viD~~t~ 162 (328)
T 3dsm_A 93 SDEKAYVTQIWDYRIFIINPKTYE--------ITGYIECPDMDMESGSTEQMVQ--YGKYVYVNCWSYQNRILKIDTETD 162 (328)
T ss_dssp ETTEEEEEEBSCSEEEEEETTTTE--------EEEEEECTTCCTTTCBCCCEEE--ETTEEEEEECTTCCEEEEEETTTT
T ss_pred CCCeEEEEECCCCeEEEEECCCCe--------EEEEEEcCCccccCCCcceEEE--ECCEEEEEcCCCCCEEEEEECCCC
Confidence 888544444489999999988762 111111112 4556777 344455544 4889999999999
Q ss_pred eeeEEecCCCCCCeEEEEEecCCCEEEEEeCC----------CeEEEEECCCCeEEEEeec--CCceEEEEEeCCCE-EE
Q psy3053 746 LMTQQLSDDINASVNGVLFSEDGCRVLSCGNN----------CMLNVYDLTTGMQVCNKVF--EEKLLCLSWAGEEK-VI 812 (917)
Q Consensus 746 ~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~D----------g~I~iwDl~tg~~i~~~~~--~~~i~~l~~s~~~~-lv 812 (917)
+....+.. ......++++|+|++++++..+ +.|.++|..+++....... ......+++++++. ++
T Consensus 163 ~~~~~i~~--g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~ly 240 (328)
T 3dsm_A 163 KVVDELTI--GIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLY 240 (328)
T ss_dssp EEEEEEEC--SSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEE
T ss_pred eEEEEEEc--CCCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEE
Confidence 98887762 3456789999999877776554 7899999999988776665 34689999998554 54
Q ss_pred EEeCCCeEEEEECCCCEEEEE--EecCCCceEEE--ee-cCCEEEEE----eCCCeEEEEECcCCeEEEEecCCCCCEEE
Q psy3053 813 LGGALGMVYLVDLIQVQLLKQ--VRAHKDAVLSL--HF-DNCTMLVG----CWDSCVVIYDVECGRIVTELAGHEDAISC 883 (917)
Q Consensus 813 ~gs~dG~I~vwdl~~~~~i~~--l~~h~~~V~si--s~-dg~~Lasg----s~DG~I~Iwdl~tg~~l~~l~~h~~~V~s 883 (917)
++.. .|.+||..+++.... +..+......+ +| ++...++. ..++.|.+||.. ++.+.++... ..-..
T Consensus 241 v~~~--~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~~~~~i~~G-~~P~~ 316 (328)
T 3dsm_A 241 WINN--DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GKLIDEFYVG-IIPGA 316 (328)
T ss_dssp EESS--SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-CCEEEEEEEE-ESEEE
T ss_pred EEcc--EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-CCEEEEEEec-cCcce
Confidence 5443 899999988775321 11113445555 55 45555555 568999999998 9888887632 22345
Q ss_pred EEE
Q psy3053 884 VAW 886 (917)
Q Consensus 884 laf 886 (917)
++|
T Consensus 317 ~~~ 319 (328)
T 3dsm_A 317 FCW 319 (328)
T ss_dssp EEE
T ss_pred EEE
Confidence 554
No 193
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.51 E-value=3e-11 Score=143.24 Aligned_cols=270 Identities=13% Similarity=0.064 Sum_probs=198.4
Q ss_pred CCCCEEEEEecccEEEEEEeccCeeeEEeccCCCceeEEEecCCCCEEEEEECCCeEEEEeCC--CCCCCccCCcceeee
Q psy3053 632 PDNCTMLVGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTG--ASWSHMKPSKSLVSQ 709 (917)
Q Consensus 632 pd~~~Lasgs~Dg~I~Iwdl~tg~~i~~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~--~~~~~~~~~~~~~~~ 709 (917)
+.+..+++...+++|.++|..+++.+..+... ..+..+.++||++++++++.|+.|.+||+. +. .....
T Consensus 165 ~~~~~~V~~~~~~~V~viD~~t~~v~~~i~~g-~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~--------~~v~~ 235 (567)
T 1qks_A 165 LENLFSVTLRDAGQIALIDGSTYEIKTVLDTG-YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEP--------TTVAE 235 (567)
T ss_dssp GGGEEEEEETTTTEEEEEETTTCCEEEEEECS-SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSC--------CEEEE
T ss_pred CCceEEEEeCCCCeEEEEECCCCeEEEEEeCC-CCccceEECCCCCEEEEEcCCCeEEEEECCCCCC--------cEeEE
Confidence 34456677778999999999999999888643 356799999999999999999999999985 33 22223
Q ss_pred ccCCCceEEEEEe----CCCCEEEEEEC-CCeEEEEECCCCeeeEEecCC---------C-CCCeEEEEEecCCCEEE-E
Q psy3053 710 LDLDNRIKCLAIS----KDNNQLAVGTE-AGELIIWSLENHLMTQQLSDD---------I-NASVNGVLFSEDGCRVL-S 773 (917)
Q Consensus 710 ~~h~~~V~~l~~s----pdg~~Lasgs~-dG~I~iwDl~~~~~~~~l~~~---------h-~~~V~~v~fspdg~~L~-s 773 (917)
.........++++ |+|+++++++. ++.+.++|..+.+.+..+... | ...+..+..++++..++ .
T Consensus 236 i~~G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~ 315 (567)
T 1qks_A 236 IKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVN 315 (567)
T ss_dssp EECCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEE
T ss_pred EecCCCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEE
Confidence 3334557899999 69998887665 589999999999888876521 1 22678888998766544 4
Q ss_pred EeCCCeEEEEECCCCeE--EEEeecCCceEEEEEeCCCEE-E-EEeCCCeEEEEECCCCEEEEEEec-----CCC-ceEE
Q psy3053 774 CGNNCMLNVYDLTTGMQ--VCNKVFEEKLLCLSWAGEEKV-I-LGGALGMVYLVDLIQVQLLKQVRA-----HKD-AVLS 843 (917)
Q Consensus 774 ~s~Dg~I~iwDl~tg~~--i~~~~~~~~i~~l~~s~~~~l-v-~gs~dG~I~vwdl~~~~~i~~l~~-----h~~-~V~s 843 (917)
...+|.|.++|..+... +..+........+.|++++.. + +...++.|.++|+.+++.+..+.. |.+ .+.-
T Consensus 316 ~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~ 395 (567)
T 1qks_A 316 VKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANF 395 (567)
T ss_dssp ETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEE
T ss_pred ecCCCeEEEEecCCCccceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCccceee
Confidence 45679999999877543 333445556778899987753 3 344678999999999998877754 433 2232
Q ss_pred EeecCCEEE-EEe-CCCeEEEEECcC-------CeEEEEecCCCCCEEEEEEcCCCCEEEEEeC-------CCcEEEEec
Q psy3053 844 LHFDNCTML-VGC-WDSCVVIYDVEC-------GRIVTELAGHEDAISCVAWDEKRKRLISGNL-------VGAPKLYAT 907 (917)
Q Consensus 844 is~dg~~La-sgs-~DG~I~Iwdl~t-------g~~l~~l~~h~~~V~slafSpdg~~LaSgs~-------DG~V~IWdl 907 (917)
+++++..+. ++. .++.|.++|..+ .+.++++......-..+..+|++++|.+... .++|.|+|+
T Consensus 396 ~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~ 475 (567)
T 1qks_A 396 VHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDI 475 (567)
T ss_dssp EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEG
T ss_pred ECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEEC
Confidence 467655444 443 468999999987 6788888765443344778999999998663 459999999
Q ss_pred Ccc
Q psy3053 908 EFY 910 (917)
Q Consensus 908 ~~~ 910 (917)
+..
T Consensus 476 ~~~ 478 (567)
T 1qks_A 476 KAM 478 (567)
T ss_dssp GGC
T ss_pred Ccc
Confidence 755
No 194
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.50 E-value=2.1e-11 Score=136.71 Aligned_cols=299 Identities=15% Similarity=0.101 Sum_probs=202.8
Q ss_pred CCcEEEEEecCCceEEEeccCCceeeeeeccc---------cceEEEEEeCCCCEEEEEecccEEEEEEeccCeeeEEec
Q psy3053 591 EGISVASVGRDAMLKIHSLKTGRQERSAVLSS---------MTLSSLCILPDNCTMLVGCWDSCVVIYDVECGRIVTELA 661 (917)
Q Consensus 591 dg~~Lasgs~Dg~I~IWd~~t~~~~~~~~~~~---------~~V~sl~~spd~~~Lasgs~Dg~I~Iwdl~tg~~i~~l~ 661 (917)
++..+++++.++.|..+|..+|+.+....... ..+.+ ....++..+++++.++.|..+|..+|+......
T Consensus 52 ~~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~v~~~~g~l~a~d~~tG~~~W~~~ 130 (376)
T 3q7m_A 52 ADNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSG-GVTVSGGHVYIGSEKAQVYALNTSDGTVAWQTK 130 (376)
T ss_dssp ETTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEE-EEEEETTEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred ECCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCccccc-CceEeCCEEEEEcCCCEEEEEECCCCCEEEEEe
Confidence 35678888889999999999999887665532 22222 222346678888999999999999999887766
Q ss_pred cCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCce------EEEEEeCCCCEEEEEECCC
Q psy3053 662 GHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRI------KCLAISKDNNQLAVGTEAG 735 (917)
Q Consensus 662 ~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V------~~l~~spdg~~Lasgs~dG 735 (917)
............ +..++.++.++.|..+|..++..... ......+ ...... +..+++++.+|
T Consensus 131 ~~~~~~~~p~~~--~~~v~v~~~~g~l~~~d~~tG~~~W~--------~~~~~~~~~~~~~~~~~~~--~~~v~~g~~~g 198 (376)
T 3q7m_A 131 VAGEALSRPVVS--DGLVLIHTSNGQLQALNEADGAVKWT--------VNLDMPSLSLRGESAPTTA--FGAAVVGGDNG 198 (376)
T ss_dssp CSSCCCSCCEEE--TTEEEEECTTSEEEEEETTTCCEEEE--------EECCC-----CCCCCCEEE--TTEEEECCTTT
T ss_pred CCCceEcCCEEE--CCEEEEEcCCCeEEEEECCCCcEEEE--------EeCCCCceeecCCCCcEEE--CCEEEEEcCCC
Confidence 543322222232 35788888999999999987731111 1111111 111222 45788888899
Q ss_pred eEEEEECCCCeeeEEecCCCCCC------eEEEEEec--CCCEEEEEeCCCeEEEEECCCCeEEEEeecCCceEEEEEeC
Q psy3053 736 ELIIWSLENHLMTQQLSDDINAS------VNGVLFSE--DGCRVLSCGNNCMLNVYDLTTGMQVCNKVFEEKLLCLSWAG 807 (917)
Q Consensus 736 ~I~iwDl~~~~~~~~l~~~h~~~------V~~v~fsp--dg~~L~s~s~Dg~I~iwDl~tg~~i~~~~~~~~i~~l~~s~ 807 (917)
.+..+|..+++.+.......... +..+...| .+..+++++.++.+..+|..+|+.+....... ..++...+
T Consensus 199 ~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~~w~~~~~~-~~~~~~~~ 277 (376)
T 3q7m_A 199 RVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQIMWKRELGS-VNDFIVDG 277 (376)
T ss_dssp EEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETTTCCEEEEECCCC-EEEEEEET
T ss_pred EEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCCcEEeeccCCC-CCCceEEC
Confidence 99999999998887765221100 00011111 34577888889999999999998887665433 44555554
Q ss_pred CCEEEEEeCCCeEEEEECCCCEEEEEEec-CCCceEEEeecCCEEEEEeCCCeEEEEECcCCeEEEEecCCCCCEEE-EE
Q psy3053 808 EEKVILGGALGMVYLVDLIQVQLLKQVRA-HKDAVLSLHFDNCTMLVGCWDSCVVIYDVECGRIVTELAGHEDAISC-VA 885 (917)
Q Consensus 808 ~~~lv~gs~dG~I~vwdl~~~~~i~~l~~-h~~~V~sis~dg~~Lasgs~DG~I~Iwdl~tg~~l~~l~~h~~~V~s-la 885 (917)
+.+++++.+|.+..+|..+++.+..... ......+....+..|++++.+|.+.++|..+|+.+.........+.+ ..
T Consensus 278 -~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~l~v~~~~g~l~~~d~~tG~~~~~~~~~~~~~~~~~~ 356 (376)
T 3q7m_A 278 -NRIYLVDQNDRVMALTIDGGVTLWTQSDLLHRLLTSPVLYNGNLVVGDSEGYLHWINVEDGRFVAQQKVDSSGFQTEPV 356 (376)
T ss_dssp -TEEEEEETTCCEEEEETTTCCEEEEECTTTTSCCCCCEEETTEEEEECTTSEEEEEETTTCCEEEEEECCTTCBCSCCE
T ss_pred -CEEEEEcCCCeEEEEECCCCcEEEeecccCCCcccCCEEECCEEEEEeCCCeEEEEECCCCcEEEEEecCCCcceeCCE
Confidence 4888999999999999999998877652 22223333445788999999999999999999998877653333322 22
Q ss_pred EcCCCCEEEEEeCCCcEEEEe
Q psy3053 886 WDEKRKRLISGNLVGAPKLYA 906 (917)
Q Consensus 886 fSpdg~~LaSgs~DG~V~IWd 906 (917)
. .+..|+.++.+|.|..|+
T Consensus 357 ~--~~~~l~v~~~~G~l~~~~ 375 (376)
T 3q7m_A 357 A--ADGKLLIQAKDGTVYSIT 375 (376)
T ss_dssp E--ETTEEEEEBTTSCEEEEE
T ss_pred E--ECCEEEEEeCCCEEEEEe
Confidence 2 256888899999999886
No 195
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.49 E-value=4e-12 Score=137.07 Aligned_cols=218 Identities=10% Similarity=-0.001 Sum_probs=166.6
Q ss_pred CCCcEEEEEecCCceEEEeccCCceeeeeeccc-cceEEEEEeCCCCEEEEEecccEEEEEEeccCeeeEEeccCC-Cce
Q psy3053 590 GEGISVASVGRDAMLKIHSLKTGRQERSAVLSS-MTLSSLCILPDNCTMLVGCWDSCVVIYDVECGRIVTELAGHE-DAI 667 (917)
Q Consensus 590 pdg~~Lasgs~Dg~I~IWd~~t~~~~~~~~~~~-~~V~sl~~spd~~~Lasgs~Dg~I~Iwdl~tg~~i~~l~~H~-~~V 667 (917)
..++.|++++.++.|.+||.++|+.+.++..+. ..+.+++++|+|++++ +.++.|..||. +|+.+..+..+. ..+
T Consensus 3 ~~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~~~ 79 (276)
T 3no2_A 3 SPQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGRELWNIAAPAGCEM 79 (276)
T ss_dssp CCCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEEEECCTTCEE
T ss_pred CCCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEEEcCCCCccc
Confidence 346789999999999999999999999888765 4688999999999888 45788999999 899999888753 578
Q ss_pred eEEEecCCCCEEEEEEC-CCeEEEEeCCCCCCCccCCccee-eeccCCCceEEEEEeCCCCEEEEEECCCeEEEEECCCC
Q psy3053 668 SCVAWDEKRKRLISGSW-DCTVRVWNTGASWSHMKPSKSLV-SQLDLDNRIKCLAISKDNNQLAVGTEAGELIIWSLENH 745 (917)
Q Consensus 668 t~l~~spd~~~L~Sgs~-DgtI~vWdl~~~~~~~~~~~~~~-~~~~h~~~V~~l~~spdg~~Lasgs~dG~I~iwDl~~~ 745 (917)
.++.+.++|+.+++.+. ++.|..+|.... .... .... ....+......++..++|+++++...++.|..||.. |
T Consensus 80 ~~~~~~~dG~~lv~~~~~~~~v~~vd~~Gk-~l~~--~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G 155 (276)
T 3no2_A 80 QTARILPDGNALVAWCGHPSTILEVNMKGE-VLSK--TEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-G 155 (276)
T ss_dssp EEEEECTTSCEEEEEESTTEEEEEECTTSC-EEEE--EEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-S
T ss_pred cccEECCCCCEEEEecCCCCEEEEEeCCCC-EEEE--EeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-C
Confidence 89999999999999887 777877775322 0000 0000 000111234566789999999999999999999998 9
Q ss_pred eeeEEecCCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeEEEEeecC-------CceEEEEEeCCCEEEEEeC
Q psy3053 746 LMTQQLSDDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCNKVFE-------EKLLCLSWAGEEKVILGGA 816 (917)
Q Consensus 746 ~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~tg~~i~~~~~~-------~~i~~l~~s~~~~lv~gs~ 816 (917)
+.+.++.. ...+.++...++|+.+++++.++.|..+|..+|+.+...... ..+..+...+++.+++++.
T Consensus 156 ~~~w~~~~--~~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~ 231 (276)
T 3no2_A 156 QLLNSVKL--SGTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICNW 231 (276)
T ss_dssp CEEEEEEC--SSCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEEE
T ss_pred CEEEEEEC--CCCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcCCCCEEEEec
Confidence 99888873 245667888999999999988889999999999998776532 1155666666666665553
No 196
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.48 E-value=4.5e-12 Score=155.86 Aligned_cols=274 Identities=12% Similarity=-0.003 Sum_probs=175.1
Q ss_pred CCCCEEEEEecccE---EEEEEec-----cCeeeEEe------ccCCCceeEEEecCCCCEEEEEECC-----CeEEEEe
Q psy3053 632 PDNCTMLVGCWDSC---VVIYDVE-----CGRIVTEL------AGHEDAISCVAWDEKRKRLISGSWD-----CTVRVWN 692 (917)
Q Consensus 632 pd~~~Lasgs~Dg~---I~Iwdl~-----tg~~i~~l------~~H~~~Vt~l~~spd~~~L~Sgs~D-----gtI~vWd 692 (917)
|+|++++....++. -.+|... .++....+ .+|...+..++|||||++|+.++.+ .+|++||
T Consensus 116 pdG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~d 195 (741)
T 1yr2_A 116 RRGASVFYSWNSGLMNQSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVG 195 (741)
T ss_dssp EETTEEEEEEECSSCSSCEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEE
T ss_pred EECCEEEEEEEcCCCeEEEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEE
Confidence 77877776654432 4445443 33322211 2344478899999999999887654 4699999
Q ss_pred CCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEEEECCCe--------------EEEEECCCCee--eEEec-CCC
Q psy3053 693 TGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGE--------------LIIWSLENHLM--TQQLS-DDI 755 (917)
Q Consensus 693 l~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~dG~--------------I~iwDl~~~~~--~~~l~-~~h 755 (917)
+.++.. .....+...+..++|+|| +.|+.++.++. |++|++.++.. ..... ..+
T Consensus 196 l~tg~~--------~~~~~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~ 266 (741)
T 1yr2_A 196 VADGKP--------LADELKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPEL 266 (741)
T ss_dssp TTTCCE--------EEEEEEEEESCCCEESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTC
T ss_pred CCCCCC--------CCccCCCceeccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCC
Confidence 988721 111111122357899999 99998887654 89999987652 22222 123
Q ss_pred CCCeEEEEEecCCCEEEEEeCCC-----eEEEEECCCC--e-EEEEeecCCceEEEEEeCCCEEEEEeC----CCeEEEE
Q psy3053 756 NASVNGVLFSEDGCRVLSCGNNC-----MLNVYDLTTG--M-QVCNKVFEEKLLCLSWAGEEKVILGGA----LGMVYLV 823 (917)
Q Consensus 756 ~~~V~~v~fspdg~~L~s~s~Dg-----~I~iwDl~tg--~-~i~~~~~~~~i~~l~~s~~~~lv~gs~----dG~I~vw 823 (917)
...+.++.|||||++|+..+.++ .|++||+.++ + ...............+...+.++..+. .+.|.+|
T Consensus 267 ~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~dg~~l~~~s~~~~~~~~l~~~ 346 (741)
T 1yr2_A 267 PKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWDFVDGVGDQLWFVSGDGAPLKKIVRV 346 (741)
T ss_dssp TTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEEEEEEETTEEEEEECTTCTTCEEEEE
T ss_pred CeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceEEEEeccCCEEEEEECCCCCCCEEEEE
Confidence 34588999999999998877544 8999999877 3 222222333333333333346666654 3569999
Q ss_pred ECCCC--EEEEEEecCCCceEEEee-cCCEEEEEeCCCeEEEEECc-CCeEEEEecC-CCCCEEEEEEcCCCCEEEEE--
Q psy3053 824 DLIQV--QLLKQVRAHKDAVLSLHF-DNCTMLVGCWDSCVVIYDVE-CGRIVTELAG-HEDAISCVAWDEKRKRLISG-- 896 (917)
Q Consensus 824 dl~~~--~~i~~l~~h~~~V~sis~-dg~~Lasgs~DG~I~Iwdl~-tg~~l~~l~~-h~~~V~slafSpdg~~LaSg-- 896 (917)
|+.++ .....+..+...+..+++ ++.+++++..||..++|.+. +++....+.. +.+.|..++++|+++.|+..
T Consensus 347 d~~~~~~~~~~l~~~~~~~l~~~~~~~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~s 426 (741)
T 1yr2_A 347 DLSGSTPRFDTVVPESKDNLESVGIAGNRLFASYIHDAKSQVLAFDLDGKPAGAVSLPGIGSASGLSGRPGDRHAYLSFS 426 (741)
T ss_dssp ECSSSSCEEEEEECCCSSEEEEEEEEBTEEEEEEEETTEEEEEEEETTSCEEEECBCSSSCEEEEEECCBTCSCEEEEEE
T ss_pred eCCCCccccEEEecCCCCeEEEEEEECCEEEEEEEECCEEEEEEEeCCCCceeeccCCCCeEEEEeecCCCCCEEEEEEc
Confidence 99874 344444555555666665 45567778889987777654 4666666664 36678999999998866632
Q ss_pred --eCCCcEEEEecCcceEEE
Q psy3053 897 --NLVGAPKLYATEFYLLYV 914 (917)
Q Consensus 897 --s~DG~V~IWdl~~~ll~~ 914 (917)
...++|++||+.+.....
T Consensus 427 s~~~P~~i~~~d~~tg~~~~ 446 (741)
T 1yr2_A 427 SFTQPATVLALDPATAKTTP 446 (741)
T ss_dssp ETTEEEEEEEEETTTTEEEE
T ss_pred CCCCCCEEEEEECCCCcEEE
Confidence 345789999998765443
No 197
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.47 E-value=1.2e-11 Score=133.19 Aligned_cols=240 Identities=12% Similarity=0.085 Sum_probs=177.7
Q ss_pred CCCEEEEEecccEEEEEEeccCeeeEEeccCC-CceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeec-
Q psy3053 633 DNCTMLVGCWDSCVVIYDVECGRIVTELAGHE-DAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQL- 710 (917)
Q Consensus 633 d~~~Lasgs~Dg~I~Iwdl~tg~~i~~l~~H~-~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~- 710 (917)
.+++|++++.|+.|.+||.++|+.+..+..+. ..+.+++++|+|+.++ +.++.|..||. ++. .+-...
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~-------~~W~~~~ 73 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGR-------ELWNIAA 73 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSC-------EEEEEEC
T ss_pred CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCC-------EEEEEcC
Confidence 46789999999999999999999999998876 5789999999999888 45788999998 441 111111
Q ss_pred cCCCceEEEEEeCCCCEEEEEEC-CCeEEEEECCCCeeeEEecC-----CCCCCeEEEEEecCCCEEEEEeCCCeEEEEE
Q psy3053 711 DLDNRIKCLAISKDNNQLAVGTE-AGELIIWSLENHLMTQQLSD-----DINASVNGVLFSEDGCRVLSCGNNCMLNVYD 784 (917)
Q Consensus 711 ~h~~~V~~l~~spdg~~Lasgs~-dG~I~iwDl~~~~~~~~l~~-----~h~~~V~~v~fspdg~~L~s~s~Dg~I~iwD 784 (917)
+....+.++.+.++|+.+++.+. ++.+..+|. +++.+..+.. .+......++..++|+++++...++.|..||
T Consensus 74 ~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d 152 (276)
T 3no2_A 74 PAGCEMQTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIA 152 (276)
T ss_dssp CTTCEEEEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEEC
T ss_pred CCCccccccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEEC
Confidence 22356889999999999999887 888888886 6776666541 1112455677899999999999999999999
Q ss_pred CCCCeEEEEeecCCceEEEEEeCCCE-EEEEeCCCeEEEEECCCCEEEEEEecCC------CceEEE--eecCCEEEEEe
Q psy3053 785 LTTGMQVCNKVFEEKLLCLSWAGEEK-VILGGALGMVYLVDLIQVQLLKQVRAHK------DAVLSL--HFDNCTMLVGC 855 (917)
Q Consensus 785 l~tg~~i~~~~~~~~i~~l~~s~~~~-lv~gs~dG~I~vwdl~~~~~i~~l~~h~------~~V~si--s~dg~~Lasgs 855 (917)
.. |+.+........+.++...+++. +++++.++.|..+|..+++.+.++..+. ..+..+ .++|..+++..
T Consensus 153 ~~-G~~~w~~~~~~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~ 231 (276)
T 3no2_A 153 PN-GQLLNSVKLSGTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICNW 231 (276)
T ss_dssp TT-SCEEEEEECSSCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEEE
T ss_pred CC-CCEEEEEECCCCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcCCCCEEEEec
Confidence 98 99988888776677777777655 5555666789999999999999886432 124444 45788777764
Q ss_pred CC--------CeEEEEEC-cCCeEEEEecCCC--CCEEEE
Q psy3053 856 WD--------SCVVIYDV-ECGRIVTELAGHE--DAISCV 884 (917)
Q Consensus 856 ~D--------G~I~Iwdl-~tg~~l~~l~~h~--~~V~sl 884 (917)
.. +..+++++ .+|+.+.++..+. +.++++
T Consensus 232 ~g~~~~~~~~~~~~~~~~~~~g~~~W~~~~~~~~~~~~~~ 271 (276)
T 3no2_A 232 QGHDREAGKGKHPQLVEIDSEGKVVWQLNDKVKFGMISTI 271 (276)
T ss_dssp CTTCTTGGGSCCCSEEEECTTSBEEEEECCTTTSCCCCEE
T ss_pred cCccccccccCCceEEEECCCCCEEEEecCcccccceeee
Confidence 21 23456665 5778887776543 345544
No 198
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.46 E-value=8.2e-12 Score=132.53 Aligned_cols=238 Identities=11% Similarity=-0.012 Sum_probs=163.9
Q ss_pred ceEEEEEeCCCcEEE-EEecCCceEEEeccCCceeeeeeccccceEEEEEeCCCCEEEEEecccEEEEEEeccCeeeEEe
Q psy3053 582 AITAVAICGEGISVA-SVGRDAMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTMLVGCWDSCVVIYDVECGRIVTEL 660 (917)
Q Consensus 582 ~Vtsv~fSpdg~~La-sgs~Dg~I~IWd~~t~~~~~~~~~~~~~V~sl~~spd~~~Lasgs~Dg~I~Iwdl~tg~~i~~l 660 (917)
...+++++++|+..+ +.+.++.|.+|+..++............+.+++++++++++++.. ++.|.+||..++......
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~~~~~ 103 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQTVLP 103 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSCCEECC
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCceEeeee
Confidence 567899999998666 446788999999766543322222334578899999998666655 889999998765443222
Q ss_pred ccCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEEEECCCeEEEE
Q psy3053 661 AGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGELIIW 740 (917)
Q Consensus 661 ~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~dG~I~iw 740 (917)
......+.+++++++++.+++...++.|.+|+..+.. ...........+.+++++++|+++++...++.|.+|
T Consensus 104 ~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~-------~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~ 176 (270)
T 1rwi_B 104 FDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKT-------QTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKL 176 (270)
T ss_dssp CCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCS-------CEECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEE
T ss_pred cCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCce-------eEeeccccCCCceeEEEeCCCCEEEEECCCCEEEEE
Confidence 2333678999999999877777778999999754431 111111223457889999999977777778899999
Q ss_pred ECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeEEEEee-cCCceEEEEEeCCCEEE-EEeCCC
Q psy3053 741 SLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCNKV-FEEKLLCLSWAGEEKVI-LGGALG 818 (917)
Q Consensus 741 Dl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~tg~~i~~~~-~~~~i~~l~~s~~~~lv-~gs~dG 818 (917)
|..+........ .....+.+++++++|..+++...++.|.+||..+........ ....+.++++++++.++ +...++
T Consensus 177 ~~~~~~~~~~~~-~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~ 255 (270)
T 1rwi_B 177 EAESNNQVVLPF-TDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADRGND 255 (270)
T ss_dssp CTTTCCEEECCC-SSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEECCCCSCSCEEEEEECTTCCEEEEEGGGT
T ss_pred ecCCCceEeecc-cCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcceeeccCCCCCceeEEECCCCCEEEEECCCC
Confidence 988766544332 333678999999999777777778899999987654332221 12457888888766544 445678
Q ss_pred eEEEEECCCC
Q psy3053 819 MVYLVDLIQV 828 (917)
Q Consensus 819 ~I~vwdl~~~ 828 (917)
.|.++++...
T Consensus 256 ~v~~~~~~~~ 265 (270)
T 1rwi_B 256 RVVKLTSLEH 265 (270)
T ss_dssp EEEEECCCGG
T ss_pred EEEEEcCCCc
Confidence 8888887654
No 199
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.45 E-value=4.6e-11 Score=133.77 Aligned_cols=273 Identities=14% Similarity=0.073 Sum_probs=194.0
Q ss_pred EEeCCCCEEEEEec-----ccEEEEEEeccCeeeEEeccCCCceeEEEecCCCCEEEEEE----------CCCeEEEEeC
Q psy3053 629 CILPDNCTMLVGCW-----DSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGS----------WDCTVRVWNT 693 (917)
Q Consensus 629 ~~spd~~~Lasgs~-----Dg~I~Iwdl~tg~~i~~l~~H~~~Vt~l~~spd~~~L~Sgs----------~DgtI~vWdl 693 (917)
...|+++.+.+... ++.|.+.|..+++.+..+..-..+ .++++|||+++++++ .++.|.+||.
T Consensus 39 ~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P--~va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~ 116 (386)
T 3sjl_D 39 APAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP--NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDP 116 (386)
T ss_dssp CCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECT
T ss_pred ccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCCC--cEEECCCCCEEEEEcccccccccCCCCCEEEEEEC
Confidence 45688988888765 689999999999999988765555 499999999888775 3678999999
Q ss_pred CCCCCCccCCcceeee-cc------CCCceEEEEEeCCCCEEEEEEC--CCeEEEEECCCCeeeEEecCCCCCCeEEEEE
Q psy3053 694 GASWSHMKPSKSLVSQ-LD------LDNRIKCLAISKDNNQLAVGTE--AGELIIWSLENHLMTQQLSDDINASVNGVLF 764 (917)
Q Consensus 694 ~~~~~~~~~~~~~~~~-~~------h~~~V~~l~~spdg~~Lasgs~--dG~I~iwDl~~~~~~~~l~~~h~~~V~~v~f 764 (917)
.+.. ..... .+ .......++++|||+++.++.. ++.|.++|+.+++.+.++..+ +. ...+
T Consensus 117 ~t~~-------v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~--g~--~~~~ 185 (386)
T 3sjl_D 117 VTLL-------PTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVP--DC--YHIF 185 (386)
T ss_dssp TTCC-------EEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECC--SE--EEEE
T ss_pred CCCe-------EEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECC--Cc--ceee
Confidence 8762 11111 11 1234667999999999988864 689999999999999988622 21 2233
Q ss_pred ecCCCEEEEEeCCCeEEEEECCC-CeEEEEee-cC----CceE-EEEEe-CCCEEEEEeCCCeEEEEECCCCE--EEEEE
Q psy3053 765 SEDGCRVLSCGNNCMLNVYDLTT-GMQVCNKV-FE----EKLL-CLSWA-GEEKVILGGALGMVYLVDLIQVQ--LLKQV 834 (917)
Q Consensus 765 spdg~~L~s~s~Dg~I~iwDl~t-g~~i~~~~-~~----~~i~-~l~~s-~~~~lv~gs~dG~I~vwdl~~~~--~i~~l 834 (917)
....+.+++.+.||.+.+.++.+ ++...... .- ..+. ...|. +++.++..+.+|.|++.|..+.. .+..+
T Consensus 186 P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~vs~~g~V~v~d~~~~~~~v~~~~ 265 (386)
T 3sjl_D 186 PTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAV 265 (386)
T ss_dssp EEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCE
T ss_pred cCCCceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEEEeCCCEEEEEECCCCcceeecce
Confidence 33556777888899999998876 55432111 10 1111 13554 67777778889999999997653 33333
Q ss_pred e------------cCCCceEEEeecCCEEEEEeC----------CCeEEEEECcCCeEEEEecCCCCCEEEEEEcCCCC-
Q psy3053 835 R------------AHKDAVLSLHFDNCTMLVGCW----------DSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRK- 891 (917)
Q Consensus 835 ~------------~h~~~V~sis~dg~~Lasgs~----------DG~I~Iwdl~tg~~l~~l~~h~~~V~slafSpdg~- 891 (917)
. .......+++++++.++.... .+.|.+.|+.+++.+..+..- ..+.++++++|++
T Consensus 266 ~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg-~~~~~lavs~D~~~ 344 (386)
T 3sjl_D 266 EALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMG-HEIDSINVSQDEKP 344 (386)
T ss_dssp ESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEE-EEECEEEECSSSSC
T ss_pred eccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECC-CCcceEEECCCCCe
Confidence 2 223345666888888877643 257999999999999888642 3688999999997
Q ss_pred EEEEE-eCCCcEEEEecCc-ceEEEE
Q psy3053 892 RLISG-NLVGAPKLYATEF-YLLYVL 915 (917)
Q Consensus 892 ~LaSg-s~DG~V~IWdl~~-~ll~~L 915 (917)
+|+++ ..++.|.++|..+ ..+.++
T Consensus 345 ~ly~tn~~~~~VsViD~~t~k~~~~i 370 (386)
T 3sjl_D 345 LLYALSTGDKTLYIHDAESGEELRSV 370 (386)
T ss_dssp EEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred EEEEEcCCCCeEEEEECCCCcEEEEe
Confidence 67665 4589999999974 455554
No 200
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.44 E-value=1.8e-11 Score=129.82 Aligned_cols=239 Identities=10% Similarity=-0.049 Sum_probs=157.3
Q ss_pred ceEEEEEeCCCCEEE-EEecccEEEEEEeccCeeeEEeccCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccC
Q psy3053 624 TLSSLCILPDNCTML-VGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKP 702 (917)
Q Consensus 624 ~V~sl~~spd~~~La-sgs~Dg~I~Iwdl~tg~~i~~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~ 702 (917)
...++++++++++.+ +.+.++.|.+|+..++........+...+.+++++++++.+++.. ++.|.+||..+...
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~---- 99 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQ---- 99 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSCC----
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCceE----
Confidence 457889999998777 547789999999766544332233445788999999988666555 88999999765411
Q ss_pred CcceeeeccCCCceEEEEEeCCCCEEEEEECCCeEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEEeCCCeEEE
Q psy3053 703 SKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCGNNCMLNV 782 (917)
Q Consensus 703 ~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~dG~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~Dg~I~i 782 (917)
..........+.+++++++|+++++...++.|.+|+..+........ .....+.+++++++|+.+++...++.|.+
T Consensus 100 ---~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~-~~~~~p~~i~~~~~g~l~v~~~~~~~i~~ 175 (270)
T 1rwi_B 100 ---TVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPF-TGLNDPDGVAVDNSGNVYVTDTDNNRVVK 175 (270)
T ss_dssp ---EECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCC-CSCCSCCCEEECTTCCEEEEEGGGTEEEE
T ss_pred ---eeeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeecc-ccCCCceeEEEeCCCCEEEEECCCCEEEE
Confidence 11111223568899999999988777778899999876554333222 23346788999999987777667788999
Q ss_pred EECCCCeEEEEeecC-CceEEEEEeCCCEEEEEeCCCeEEEEECCCCEEEEEEecCCCceEEEeecCCEEEEEeCCCeEE
Q psy3053 783 YDLTTGMQVCNKVFE-EKLLCLSWAGEEKVILGGALGMVYLVDLIQVQLLKQVRAHKDAVLSLHFDNCTMLVGCWDSCVV 861 (917)
Q Consensus 783 wDl~tg~~i~~~~~~-~~i~~l~~s~~~~lv~gs~dG~I~vwdl~~~~~i~~l~~h~~~V~sis~dg~~Lasgs~DG~I~ 861 (917)
||..++......... ..+.++++ +++|...++...++.|.
T Consensus 176 ~~~~~~~~~~~~~~~~~~p~~i~~---------------------------------------d~~g~l~v~~~~~~~v~ 216 (270)
T 1rwi_B 176 LEAESNNQVVLPFTDITAPWGIAV---------------------------------------DEAGTVYVTEHNTNQVV 216 (270)
T ss_dssp ECTTTCCEEECCCSSCCSEEEEEE---------------------------------------CTTCCEEEEETTTSCEE
T ss_pred EecCCCceEeecccCCCCceEEEE---------------------------------------CCCCCEEEEECCCCcEE
Confidence 987755432111000 11222222 34555555555566777
Q ss_pred EEECcCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcc
Q psy3053 862 IYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGNLVGAPKLYATEFY 910 (917)
Q Consensus 862 Iwdl~tg~~l~~l~~h~~~V~slafSpdg~~LaSgs~DG~V~IWdl~~~ 910 (917)
+|+............+...+.+++++++|+.+++...++.|++++....
T Consensus 217 ~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~ 265 (270)
T 1rwi_B 217 KLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSLEH 265 (270)
T ss_dssp EECTTCSCCEECCCCSCSCEEEEEECTTCCEEEEEGGGTEEEEECCCGG
T ss_pred EEcCCCCcceeeccCCCCCceeEEECCCCCEEEEECCCCEEEEEcCCCc
Confidence 7776544333222233456899999999998888889999999998754
No 201
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.44 E-value=3e-10 Score=121.81 Aligned_cols=274 Identities=6% Similarity=-0.062 Sum_probs=188.1
Q ss_pred cCCcceEEEEEeCCCcEEEEEecCCceEEEeccCCceeee-eeccccceEEEEEeCCCCEEEEEecccEEEEEEeccCee
Q psy3053 578 SHKEAITAVAICGEGISVASVGRDAMLKIHSLKTGRQERS-AVLSSMTLSSLCILPDNCTMLVGCWDSCVVIYDVECGRI 656 (917)
Q Consensus 578 ~H~~~Vtsv~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~-~~~~~~~V~sl~~spd~~~Lasgs~Dg~I~Iwdl~tg~~ 656 (917)
.....+.+++++++|+..++...++.|.+|+.. ++.... +......+.++++.+++.+.++...++.|..+|.. ++.
T Consensus 17 ~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~ 94 (300)
T 2qc5_A 17 IPDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGF 94 (300)
T ss_dssp STTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCE
T ss_pred CCCCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CCe
Confidence 345678899999999987777778999999987 554331 22223567889999999877777668899999988 554
Q ss_pred eE-EeccCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEEEECCC
Q psy3053 657 VT-ELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAG 735 (917)
Q Consensus 657 i~-~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~dG 735 (917)
.. ........+.++++.++++..++...++.|..+|.. +. ............+.+++++++|++.++...++
T Consensus 95 ~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~------~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~ 167 (300)
T 2qc5_A 95 TEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GT------IYEYDLPNKGSYPAFITLGSDNALWFTENQNN 167 (300)
T ss_dssp EEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SC------EEEEECSSTTCCEEEEEECTTSSEEEEETTTT
T ss_pred EEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CC------EEEccCCCCCCCceeEEECCCCCEEEEecCCC
Confidence 32 223344678999999999888877778899999876 31 01111122345788999999999766666678
Q ss_pred eEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeEEEEe-e-cCCceEEEEEeCCCEEEE
Q psy3053 736 ELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCNK-V-FEEKLLCLSWAGEEKVIL 813 (917)
Q Consensus 736 ~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~tg~~i~~~-~-~~~~i~~l~~s~~~~lv~ 813 (917)
.|..+|. +++............+.+++++++|...++....+.|.++|. ++...... . ....+.++++++++.+.+
T Consensus 168 ~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v 245 (300)
T 2qc5_A 168 SIGRITN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGEISEYDIPTPNARPHAITAGKNSEIWF 245 (300)
T ss_dssp EEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEE
T ss_pred eEEEECC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCcEEEEECCCCCCCceEEEECCCCCEEE
Confidence 9999998 555443222234467899999999987777666788999998 55443321 1 235588999998887777
Q ss_pred EeC-CCeEEEEECCCCEEEE-EEecCCCceEEE--eecCCEEEEEeCCCeEEEEEC
Q psy3053 814 GGA-LGMVYLVDLIQVQLLK-QVRAHKDAVLSL--HFDNCTMLVGCWDSCVVIYDV 865 (917)
Q Consensus 814 gs~-dG~I~vwdl~~~~~i~-~l~~h~~~V~si--s~dg~~Lasgs~DG~I~Iwdl 865 (917)
++. ++.|..+|. +++... .+......+.++ .++|++.++.. . .|..+|.
T Consensus 246 ~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~-~-~i~~~~p 298 (300)
T 2qc5_A 246 TEWGANQIGRITN-DNTIQEYQLQTENAEPHGITFGKDGSVWFALK-C-KIGKLNL 298 (300)
T ss_dssp EETTTTEEEEECT-TSCEEEEECCSTTCCCCCEEECTTSCEEEECS-S-EEEEEEE
T ss_pred eccCCCeEEEECC-CCcEEEEECCccCCccceeEeCCCCCEEEEcc-C-ceEEeCC
Confidence 764 589999998 454332 223233445555 45666555444 4 6666664
No 202
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.43 E-value=4.2e-10 Score=120.69 Aligned_cols=272 Identities=5% Similarity=-0.061 Sum_probs=189.6
Q ss_pred ccceEEEEEeCCCCEEEEEecccEEEEEEeccCeeeE-EeccCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCc
Q psy3053 622 SMTLSSLCILPDNCTMLVGCWDSCVVIYDVECGRIVT-ELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHM 700 (917)
Q Consensus 622 ~~~V~sl~~spd~~~Lasgs~Dg~I~Iwdl~tg~~i~-~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~ 700 (917)
.....++++.++++..++...++.|.+||.. ++... .+..+...+.++++.++++..++...++.|..+|.. +.
T Consensus 19 ~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~--- 93 (300)
T 2qc5_A 19 DSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GG--- 93 (300)
T ss_dssp TCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SC---
T ss_pred CCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CC---
Confidence 3456889999999888877778999999988 65443 233344678999999999887777668899999976 31
Q ss_pred cCCcceeeeccCCCceEEEEEeCCCCEEEEEECCCeEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEEeCCCeE
Q psy3053 701 KPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCGNNCML 780 (917)
Q Consensus 701 ~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~dG~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~Dg~I 780 (917)
............+.+++++++|++.++...++.|..+|.. ++............+.++++.++|+..++...++.|
T Consensus 94 ---~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i 169 (300)
T 2qc5_A 94 ---FTEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNALWFTENQNNSI 169 (300)
T ss_dssp ---EEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEE
T ss_pred ---eEEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCCEEEEecCCCeE
Confidence 0111112234678999999999988877778899999987 555433222345678999999999966666667899
Q ss_pred EEEECCCCeEEEEe--ecCCceEEEEEeCCCEEEEEeC-CCeEEEEECCCCEEEEE-EecCCCceEEE--eecCCEEEEE
Q psy3053 781 NVYDLTTGMQVCNK--VFEEKLLCLSWAGEEKVILGGA-LGMVYLVDLIQVQLLKQ-VRAHKDAVLSL--HFDNCTMLVG 854 (917)
Q Consensus 781 ~iwDl~tg~~i~~~--~~~~~i~~l~~s~~~~lv~gs~-dG~I~vwdl~~~~~i~~-l~~h~~~V~si--s~dg~~Lasg 854 (917)
..+|. +++..... .....+.++++++++.+.++.. .+.|.++|. +++.... ...+...+.++ +++|+..++.
T Consensus 170 ~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~ 247 (300)
T 2qc5_A 170 GRITN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGEISEYDIPTPNARPHAITAGKNSEIWFTE 247 (300)
T ss_dssp EEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEE
T ss_pred EEECC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCcEEEEECCCCCCCceEEEECCCCCEEEec
Confidence 99998 55544321 1234578899998877777665 568999998 5544332 33345556666 4567766666
Q ss_pred eCCCeEEEEECcCCeEEE-EecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEec
Q psy3053 855 CWDSCVVIYDVECGRIVT-ELAGHEDAISCVAWDEKRKRLISGNLVGAPKLYAT 907 (917)
Q Consensus 855 s~DG~I~Iwdl~tg~~l~-~l~~h~~~V~slafSpdg~~LaSgs~DG~V~IWdl 907 (917)
..++.|..++. +++... .+......+.+++++++|...++.. . .|..++.
T Consensus 248 ~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~-~-~i~~~~p 298 (300)
T 2qc5_A 248 WGANQIGRITN-DNTIQEYQLQTENAEPHGITFGKDGSVWFALK-C-KIGKLNL 298 (300)
T ss_dssp TTTTEEEEECT-TSCEEEEECCSTTCCCCCEEECTTSCEEEECS-S-EEEEEEE
T ss_pred cCCCeEEEECC-CCcEEEEECCccCCccceeEeCCCCCEEEEcc-C-ceEEeCC
Confidence 66789999998 454432 2333456688999999998666554 4 6666654
No 203
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.43 E-value=2.2e-11 Score=149.73 Aligned_cols=275 Identities=12% Similarity=0.034 Sum_probs=177.8
Q ss_pred eCCCcEEEEEecCCc---eEEEecc-----CCceeeee------eccccceEEEEEeCCCCEEEEEecc-----cEEEEE
Q psy3053 589 CGEGISVASVGRDAM---LKIHSLK-----TGRQERSA------VLSSMTLSSLCILPDNCTMLVGCWD-----SCVVIY 649 (917)
Q Consensus 589 Spdg~~Lasgs~Dg~---I~IWd~~-----t~~~~~~~------~~~~~~V~sl~~spd~~~Lasgs~D-----g~I~Iw 649 (917)
+|+|++++....++. -.+|... .+.....+ ..+...+..++|||||++||.++.+ ..|++|
T Consensus 115 ~pdG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~ 194 (741)
T 1yr2_A 115 QRRGASVFYSWNSGLMNQSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFV 194 (741)
T ss_dssp EEETTEEEEEEECSSCSSCEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECTTSSEEEEEEEETTCSEEEEEEE
T ss_pred EEECCEEEEEEEcCCCeEEEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEE
Confidence 488988877665543 5666654 23222211 1122367889999999999987654 469999
Q ss_pred EeccCeeeEEeccCCCceeEEEecCCCCEEEEEECCCe--------------EEEEeCCCCCCCccCCcceeeeccCCCc
Q psy3053 650 DVECGRIVTELAGHEDAISCVAWDEKRKRLISGSWDCT--------------VRVWNTGASWSHMKPSKSLVSQLDLDNR 715 (917)
Q Consensus 650 dl~tg~~i~~l~~H~~~Vt~l~~spd~~~L~Sgs~Dgt--------------I~vWdl~~~~~~~~~~~~~~~~~~h~~~ 715 (917)
|+.+|+.+... .+...+..++|+|| +.|+.++.|+. |.+|++.++... ...+.....+...
T Consensus 195 dl~tg~~~~~~-~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~---~~lv~~~~~~~~~ 269 (741)
T 1yr2_A 195 GVADGKPLADE-LKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSA---DQPVFATPELPKR 269 (741)
T ss_dssp ETTTCCEEEEE-EEEEESCCCEESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGG---CEEEECCTTCTTC
T ss_pred ECCCCCCCCcc-CCCceeccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchh---CEEEeccCCCCeE
Confidence 99999875532 12222467899999 99998887664 889998765210 0111111223335
Q ss_pred eEEEEEeCCCCEEEEEECCC-----eEEEEECCCC--eeeEEecCCCCCCeEEEEEecCCCEEEEEeCC----CeEEEEE
Q psy3053 716 IKCLAISKDNNQLAVGTEAG-----ELIIWSLENH--LMTQQLSDDINASVNGVLFSEDGCRVLSCGNN----CMLNVYD 784 (917)
Q Consensus 716 V~~l~~spdg~~Lasgs~dG-----~I~iwDl~~~--~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~D----g~I~iwD 784 (917)
+..+.|+|||+.|+.++.++ .|.+||+.++ +....+. .+...+... ++|+|+.|+..+.+ +.|.+||
T Consensus 270 ~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~-~~~~~~~~~-~~~dg~~l~~~s~~~~~~~~l~~~d 347 (741)
T 1yr2_A 270 GHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALI-PDLKAQWDF-VDGVGDQLWFVSGDGAPLKKIVRVD 347 (741)
T ss_dssp EEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEE-CSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEE
T ss_pred EEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEec-CCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEe
Confidence 88999999999988877554 8999999877 3134444 233344444 35899988887764 4599999
Q ss_pred CCCC--eEEEEeec-CCceEEEEEeCCCEEEEEeCCCeEEEEECC-CCEEEEEEec-CCCceEEE--eecCCEEEEE-e-
Q psy3053 785 LTTG--MQVCNKVF-EEKLLCLSWAGEEKVILGGALGMVYLVDLI-QVQLLKQVRA-HKDAVLSL--HFDNCTMLVG-C- 855 (917)
Q Consensus 785 l~tg--~~i~~~~~-~~~i~~l~~s~~~~lv~gs~dG~I~vwdl~-~~~~i~~l~~-h~~~V~si--s~dg~~Lasg-s- 855 (917)
+.++ ........ ...+..+++.++..+++...+|..++|... +++....+.. +.+.+..+ +++++.++.. +
T Consensus 348 ~~~~~~~~~~l~~~~~~~l~~~~~~~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss 427 (741)
T 1yr2_A 348 LSGSTPRFDTVVPESKDNLESVGIAGNRLFASYIHDAKSQVLAFDLDGKPAGAVSLPGIGSASGLSGRPGDRHAYLSFSS 427 (741)
T ss_dssp CSSSSCEEEEEECCCSSEEEEEEEEBTEEEEEEEETTEEEEEEEETTSCEEEECBCSSSCEEEEEECCBTCSCEEEEEEE
T ss_pred CCCCccccEEEecCCCCeEEEEEEECCEEEEEEEECCEEEEEEEeCCCCceeeccCCCCeEEEEeecCCCCCEEEEEEcC
Confidence 9874 33322332 234667788866566777788876666543 4556666654 35566666 5677655532 2
Q ss_pred --CCCeEEEEECcCCeE
Q psy3053 856 --WDSCVVIYDVECGRI 870 (917)
Q Consensus 856 --~DG~I~Iwdl~tg~~ 870 (917)
..++|++||+.+++.
T Consensus 428 ~~~P~~i~~~d~~tg~~ 444 (741)
T 1yr2_A 428 FTQPATVLALDPATAKT 444 (741)
T ss_dssp TTEEEEEEEEETTTTEE
T ss_pred CCCCCEEEEEECCCCcE
Confidence 347899999988873
No 204
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.42 E-value=6e-11 Score=132.82 Aligned_cols=290 Identities=11% Similarity=0.017 Sum_probs=194.5
Q ss_pred EEEeCCCcEEEEEec-----CCceEEEeccCCceeeeeeccccceEEEEEeCCCCEEEEEe----------cccEEEEEE
Q psy3053 586 VAICGEGISVASVGR-----DAMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTMLVGC----------WDSCVVIYD 650 (917)
Q Consensus 586 v~fSpdg~~Lasgs~-----Dg~I~IWd~~t~~~~~~~~~~~~~V~sl~~spd~~~Lasgs----------~Dg~I~Iwd 650 (917)
....|+++.++.+.. ++.|.+.|..+++.+..+.....+ . ++++||++.+.+++ .++.|.+||
T Consensus 38 ~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD 115 (386)
T 3sjl_D 38 EAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFD 115 (386)
T ss_dssp CCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEEC
T ss_pred eccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEE
Confidence 455789988888765 679999999999999888876666 4 99999999887775 367899999
Q ss_pred eccCeeeEEeccCC-------CceeEEEecCCCCEEEEEEC--CCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEE
Q psy3053 651 VECGRIVTELAGHE-------DAISCVAWDEKRKRLISGSW--DCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAI 721 (917)
Q Consensus 651 l~tg~~i~~l~~H~-------~~Vt~l~~spd~~~L~Sgs~--DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 721 (917)
..+++.+..+.-.. .....++++|||++++.+.. +++|.++|+.+. .........+. ...+
T Consensus 116 ~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~--------~vv~tI~v~g~--~~~~ 185 (386)
T 3sjl_D 116 PVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGK--------AFKRMLDVPDC--YHIF 185 (386)
T ss_dssp TTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTT--------EEEEEEECCSE--EEEE
T ss_pred CCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCC--------cEEEEEECCCc--ceee
Confidence 99999888775321 24567999999999998874 689999999876 22222222221 1223
Q ss_pred eCCCCEEEEEECCCeEEEEECCC-CeeeEEecC---CCCCCeE-EEEEe-cCCCEEEEEeCCCeEEEEECCCCe--EEEE
Q psy3053 722 SKDNNQLAVGTEAGELIIWSLEN-HLMTQQLSD---DINASVN-GVLFS-EDGCRVLSCGNNCMLNVYDLTTGM--QVCN 793 (917)
Q Consensus 722 spdg~~Lasgs~dG~I~iwDl~~-~~~~~~l~~---~h~~~V~-~v~fs-pdg~~L~s~s~Dg~I~iwDl~tg~--~i~~ 793 (917)
....+.+++.+.||.+.+.++.+ ++....... ....++. ...|. ++|++++ .+.+|.+++.|..++. ....
T Consensus 186 P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~~v~~~ 264 (386)
T 3sjl_D 186 PTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDAKFLPA 264 (386)
T ss_dssp EEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSSCEECCC
T ss_pred cCCCceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEE-EeCCCEEEEEECCCCcceeecc
Confidence 33446677888899998888876 554332210 1112221 24665 5775444 5668999999997664 2222
Q ss_pred ee-----------cCCceEEEEEeCC-CEEEEEeC----------CCeEEEEECCCCEEEEEEecCC-CceEEEeecCC-
Q psy3053 794 KV-----------FEEKLLCLSWAGE-EKVILGGA----------LGMVYLVDLIQVQLLKQVRAHK-DAVLSLHFDNC- 849 (917)
Q Consensus 794 ~~-----------~~~~i~~l~~s~~-~~lv~gs~----------dG~I~vwdl~~~~~i~~l~~h~-~~V~sis~dg~- 849 (917)
.. ..+....++++++ +.+.+... .+.|.++|+.+++.+..+.... ..-..+++|++
T Consensus 265 ~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg~~~~~lavs~D~~~ 344 (386)
T 3sjl_D 265 VEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQDEKP 344 (386)
T ss_dssp EESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECSSSSC
T ss_pred eeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECCCCcceEEECCCCCe
Confidence 21 0122233555643 34444432 2579999999999998886432 22344488986
Q ss_pred EEEEEe-CCCeEEEEECcCCeEEEEecCCCCCEEEEEEcCC
Q psy3053 850 TMLVGC-WDSCVVIYDVECGRIVTELAGHEDAISCVAWDEK 889 (917)
Q Consensus 850 ~Lasgs-~DG~I~Iwdl~tg~~l~~l~~h~~~V~slafSpd 889 (917)
.|+++. .++.|.++|..+++.+.++..-. .-..|.+++|
T Consensus 345 ~ly~tn~~~~~VsViD~~t~k~~~~i~~~~-~p~~l~~s~d 384 (386)
T 3sjl_D 345 LLYALSTGDKTLYIHDAESGEELRSVNQLG-HGPQVITTAD 384 (386)
T ss_dssp EEEEEETTTTEEEEEETTTCCEEEEECCCC-SSCCEEEECC
T ss_pred EEEEEcCCCCeEEEEECCCCcEEEEecCCC-CCceeEECCc
Confidence 666654 58999999999999999886432 2244566655
No 205
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.42 E-value=9.7e-10 Score=123.66 Aligned_cols=272 Identities=10% Similarity=-0.043 Sum_probs=185.3
Q ss_pred EeCCCcEEEEEec--CC---ceEEEeccCCceeeeeeccccceEEEEEeCCCCEEEEEe----------cccEEEEEEec
Q psy3053 588 ICGEGISVASVGR--DA---MLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTMLVGC----------WDSCVVIYDVE 652 (917)
Q Consensus 588 fSpdg~~Lasgs~--Dg---~I~IWd~~t~~~~~~~~~~~~~V~sl~~spd~~~Lasgs----------~Dg~I~Iwdl~ 652 (917)
..|++++++++.. .. +|.++|..+++.+..+.....+ .++++||++.++++. .++.|.+||..
T Consensus 28 ~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~ 105 (373)
T 2mad_H 28 PGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPV 105 (373)
T ss_pred CCCCCCEEEEeCCcccCCccEEEEEECCCCeEEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEECC
Confidence 4467777766653 22 7899999999988777665544 899999999998886 36789999999
Q ss_pred cCeeeEEeccC-------CCceeEEEecCCCCEEEEEEC--CCeEEEEeCCCCCCCccCCcceeee-ccCCCceEEEEEe
Q psy3053 653 CGRIVTELAGH-------EDAISCVAWDEKRKRLISGSW--DCTVRVWNTGASWSHMKPSKSLVSQ-LDLDNRIKCLAIS 722 (917)
Q Consensus 653 tg~~i~~l~~H-------~~~Vt~l~~spd~~~L~Sgs~--DgtI~vWdl~~~~~~~~~~~~~~~~-~~h~~~V~~l~~s 722 (917)
+++.+..+.-. ......++++|||++|+.++. +++|.++| .++ ..... ..... |+.+.
T Consensus 106 t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~--------~~~~~~i~~~~---~~~~~ 173 (373)
T 2mad_H 106 TFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGG--------SSDDQLLSSPT---CYHIH 173 (373)
T ss_pred CCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCC--------CEEeEEcCCCc---eEEEE
Confidence 98887766422 123458999999999998874 47899999 776 22222 22222 34555
Q ss_pred CCC-CEEEEEECCCeEEEEECCCCeeeEEecC----CCCCC-eEEEEEecCCCEEEEEeCCCeEEEEECCCCe--EEEEe
Q psy3053 723 KDN-NQLAVGTEAGELIIWSLENHLMTQQLSD----DINAS-VNGVLFSEDGCRVLSCGNNCMLNVYDLTTGM--QVCNK 794 (917)
Q Consensus 723 pdg-~~Lasgs~dG~I~iwDl~~~~~~~~l~~----~h~~~-V~~v~fspdg~~L~s~s~Dg~I~iwDl~tg~--~i~~~ 794 (917)
|++ +.+++.+.||.+.++|. +++....... ....+ .....+.+++..++..+.++.+.+.|+.++. .+..+
T Consensus 174 ~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~ 252 (373)
T 2mad_H 174 PGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPI 252 (373)
T ss_pred eCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeee
Confidence 655 45667778999999999 7776633210 11112 2335567776666655678899999987653 22222
Q ss_pred ec-----------CCceEEEEEeCCC-EEEEEeC----------CCeEEEEECCCCEEEEEEecCC-CceEEEeecCC-E
Q psy3053 795 VF-----------EEKLLCLSWAGEE-KVILGGA----------LGMVYLVDLIQVQLLKQVRAHK-DAVLSLHFDNC-T 850 (917)
Q Consensus 795 ~~-----------~~~i~~l~~s~~~-~lv~gs~----------dG~I~vwdl~~~~~i~~l~~h~-~~V~sis~dg~-~ 850 (917)
.. ......+.+++++ .+.++.. .+.|.++|..+++.+.++.... ..-..+++||+ .
T Consensus 253 ~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~g~~p~~i~~s~Dg~~~ 332 (373)
T 2mad_H 253 DALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLGHDVDAISVAQDGGPD 332 (373)
T ss_pred eecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEECCCCcCeEEECCCCCeE
Confidence 11 1223335666653 3444332 3689999999999999886433 33344588999 7
Q ss_pred EEEEe-CCCeEEEEECcCCeEEEEe
Q psy3053 851 MLVGC-WDSCVVIYDVECGRIVTEL 874 (917)
Q Consensus 851 Lasgs-~DG~I~Iwdl~tg~~l~~l 874 (917)
++++. .++.|.++|..+++.+..+
T Consensus 333 l~v~~~~~~~V~ViD~~t~~vv~~i 357 (373)
T 2mad_H 333 LYALSAGTEVLHIYDAGAGDQDQST 357 (373)
T ss_pred EEEEcCCCCeEEEEECCCCCEEeee
Confidence 77777 5899999999999998884
No 206
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.41 E-value=5.5e-10 Score=125.66 Aligned_cols=270 Identities=10% Similarity=-0.027 Sum_probs=180.0
Q ss_pred eCCCCEEEEEec--cc---EEEEEEeccCeeeEEeccCCCceeEEEecCCCCEEEEEE----------CCCeEEEEeCCC
Q psy3053 631 LPDNCTMLVGCW--DS---CVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGS----------WDCTVRVWNTGA 695 (917)
Q Consensus 631 spd~~~Lasgs~--Dg---~I~Iwdl~tg~~i~~l~~H~~~Vt~l~~spd~~~L~Sgs----------~DgtI~vWdl~~ 695 (917)
.|+++.+.+... .+ .|.++|..+++.+..+.....+ .++++||+++++.+. .++.|.+||..+
T Consensus 29 ~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t 106 (373)
T 2mad_H 29 GADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVT 106 (373)
T ss_pred CCCCCEEEEeCCcccCCccEEEEEECCCCeEEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCC
Confidence 366666666543 22 8899999999998888754444 999999999999886 367899999876
Q ss_pred CCCCccCCcceeeeccCCCceEEEEEeCCCCEEEEEEC--CCeEEEEECCCCeeeEE-ecCCCCCCeEEEEEecCC-CEE
Q psy3053 696 SWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTE--AGELIIWSLENHLMTQQ-LSDDINASVNGVLFSEDG-CRV 771 (917)
Q Consensus 696 ~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~--dG~I~iwDl~~~~~~~~-l~~~h~~~V~~v~fspdg-~~L 771 (917)
.......................++++|+|+++++++. ++.|.++| .+++.+.. +. ..+ ++.+.|++ +.+
T Consensus 107 ~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~--~~~---~~~~~~~~~~~~ 180 (373)
T 2mad_H 107 FLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLS--SPT---CYHIHPGAPSTF 180 (373)
T ss_pred CcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcC--CCc---eEEEEeCCCceE
Confidence 52100000000000001133558999999999998874 47899999 99988877 65 222 24555655 455
Q ss_pred EEEeCCCeEEEEECCCCeEEEEee-----c-CCce-EEEEEeC-CCEEEEEeCCCeEEEEECCCCE--EEEEEec-----
Q psy3053 772 LSCGNNCMLNVYDLTTGMQVCNKV-----F-EEKL-LCLSWAG-EEKVILGGALGMVYLVDLIQVQ--LLKQVRA----- 836 (917)
Q Consensus 772 ~s~s~Dg~I~iwDl~tg~~i~~~~-----~-~~~i-~~l~~s~-~~~lv~gs~dG~I~vwdl~~~~--~i~~l~~----- 836 (917)
++.+.||.+.++|. +++...... . ..++ ....+.+ .+.++..+..+.+.+.|+.... .+..+..
T Consensus 181 ~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~ 259 (373)
T 2mad_H 181 YLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGR 259 (373)
T ss_pred EEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcc
Confidence 67778999999999 877663322 1 1111 1122222 2344444578899999997552 2333321
Q ss_pred -------CCCceEEEeecCCEEEEEeC----------CCeEEEEECcCCeEEEEecCCCCCEEEEEEcCCCC-EEEEEe-
Q psy3053 837 -------HKDAVLSLHFDNCTMLVGCW----------DSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRK-RLISGN- 897 (917)
Q Consensus 837 -------h~~~V~sis~dg~~Lasgs~----------DG~I~Iwdl~tg~~l~~l~~h~~~V~slafSpdg~-~LaSgs- 897 (917)
.......++++++.++++.. ++.|.++|..+++.+.++.. .....+++|+|||+ .++++.
T Consensus 260 ~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~-g~~p~~i~~s~Dg~~~l~v~~~ 338 (373)
T 2mad_H 260 KADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISL-GHDVDAISVAQDGGPDLYALSA 338 (373)
T ss_pred cccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEEC-CCCcCeEEECCCCCeEEEEEcC
Confidence 11112455788888777653 35799999999999998863 33578999999999 788877
Q ss_pred CCCcEEEEecCcc
Q psy3053 898 LVGAPKLYATEFY 910 (917)
Q Consensus 898 ~DG~V~IWdl~~~ 910 (917)
.++.|.+||+.+.
T Consensus 339 ~~~~V~ViD~~t~ 351 (373)
T 2mad_H 339 GTEVLHIYDAGAG 351 (373)
T ss_pred CCCeEEEEECCCC
Confidence 5899999999864
No 207
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.40 E-value=1.3e-10 Score=125.95 Aligned_cols=241 Identities=9% Similarity=0.051 Sum_probs=165.4
Q ss_pred CCCceeEEEecCCCCEEEE-------EECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCC-CCEEEEEECC
Q psy3053 663 HEDAISCVAWDEKRKRLIS-------GSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKD-NNQLAVGTEA 734 (917)
Q Consensus 663 H~~~Vt~l~~spd~~~L~S-------gs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd-g~~Lasgs~d 734 (917)
.-....+++|++++..+++ ++.++.|.+||..++..... ......++...+.+++++++ |+++++ +..
T Consensus 16 ~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~---~~~~~~~~~~~~~~i~~~~~~g~l~v~-~~~ 91 (314)
T 1pjx_A 16 DIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVI---CKPEVNGYGGIPAGCQCDRDANQLFVA-DMR 91 (314)
T ss_dssp CCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEE---ECCEETTEECCEEEEEECSSSSEEEEE-ETT
T ss_pred cCCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEE---EecccCCCCCCCceEEEecCCCcEEEE-ECC
Confidence 3345689999999988887 57789999999766521000 00000123456899999999 664544 445
Q ss_pred CeEEEEECCCCeeeEE-ecC---CCCCCeEEEEEecCCCEEEEEeCC---------------CeEEEEECCCCeEEEEee
Q psy3053 735 GELIIWSLENHLMTQQ-LSD---DINASVNGVLFSEDGCRVLSCGNN---------------CMLNVYDLTTGMQVCNKV 795 (917)
Q Consensus 735 G~I~iwDl~~~~~~~~-l~~---~h~~~V~~v~fspdg~~L~s~s~D---------------g~I~iwDl~tg~~i~~~~ 795 (917)
+.|.+||.. ++.... ... .....+.+++++++|+..++...+ +.|..+|.. ++......
T Consensus 92 ~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~ 169 (314)
T 1pjx_A 92 LGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDT 169 (314)
T ss_dssp TEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEE
T ss_pred CCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEecc
Confidence 579999998 665433 221 122458899999999887777655 578888876 55444333
Q ss_pred cCCceEEEEEe----CCC-EEEEE-eCCCeEEEEECC-CCEE-----EEEEecCC-CceEEE--eecCCEEEEEeCCCeE
Q psy3053 796 FEEKLLCLSWA----GEE-KVILG-GALGMVYLVDLI-QVQL-----LKQVRAHK-DAVLSL--HFDNCTMLVGCWDSCV 860 (917)
Q Consensus 796 ~~~~i~~l~~s----~~~-~lv~g-s~dG~I~vwdl~-~~~~-----i~~l~~h~-~~V~si--s~dg~~Lasgs~DG~I 860 (917)
.......++++ +++ .++++ ..++.|.+||.. +++. ...+.++. ..+..+ +++|++.++...++.|
T Consensus 170 ~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i 249 (314)
T 1pjx_A 170 AFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHI 249 (314)
T ss_dssp EESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEE
T ss_pred CCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCCCEE
Confidence 34456788898 887 45444 467899999986 4542 22333333 445555 5678888887788999
Q ss_pred EEEECcCCeEEEEecCCCCCEEEEEEcCCCCEEE-EEeCCCcEEEEecCc
Q psy3053 861 VIYDVECGRIVTELAGHEDAISCVAWDEKRKRLI-SGNLVGAPKLYATEF 909 (917)
Q Consensus 861 ~Iwdl~tg~~l~~l~~h~~~V~slafSpdg~~La-Sgs~DG~V~IWdl~~ 909 (917)
.+||..+++.+..+..+...+.+++++|+|+.|+ +...++.|..|+++.
T Consensus 250 ~~~d~~~g~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 250 EVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp EEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred EEEcCCCCcEeEEEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence 9999987777777776778899999999999555 445678899999864
No 208
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=99.35 E-value=2.2e-11 Score=133.09 Aligned_cols=301 Identities=12% Similarity=0.030 Sum_probs=200.9
Q ss_pred EEEEEeCCCcEEEEEecCCceEEEeccCCceeeeeeccccceEEEEEeCCCCEEEEEecccEEEEEEeccCeeeEEeccC
Q psy3053 584 TAVAICGEGISVASVGRDAMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTMLVGCWDSCVVIYDVECGRIVTELAGH 663 (917)
Q Consensus 584 tsv~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~~~~~~~~V~sl~~spd~~~Lasgs~Dg~I~Iwdl~tg~~i~~l~~H 663 (917)
.+..+..+| .++.++.++.|..|| .+++...........+.++...+++. +.+++.+ +..+|. +++....+...
T Consensus 23 ~~~~~d~~g-~l~v~t~~~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~-l~v~t~~--l~~~d~-~g~~~~~~~~~ 96 (330)
T 3hxj_A 23 SSPILAKNG-TIYLGSSNKNLYAIN-TDGSVKWFFKSGEIIECRPSIGKDGT-IYFGSDK--VYAINP-DGTEKWRFDTK 96 (330)
T ss_dssp CCCEECTTS-CEECSSTTTTTEEEC-TTSCEEESSCGGGEEEECCEETTTTE-ECCSSCE--EEEECC-CGGGGGGSCC-
T ss_pred cCceEccCC-eEEEEcCCCEEEEEC-CCCcEEEEEecCCCcccceEEecCCc-EEEecCc--EEEECC-CCcEEEEEECC
Confidence 344455565 466677888999999 88888776666555566777766665 4555544 888885 56555444433
Q ss_pred CCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEEEECCCeEEEEECC
Q psy3053 664 EDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGELIIWSLE 743 (917)
Q Consensus 664 ~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~dG~I~iwDl~ 743 (917)
.......... +..+..++.++.|..+|.. +. ...........+.++...+++. +.+|+.++.|..+|..
T Consensus 97 ~~~~~~~~~~--~~~l~v~t~~~~l~~~d~~-g~-------~~~~~~~~~~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~ 165 (330)
T 3hxj_A 97 KAIVSDFTIF--EDILYVTSMDGHLYAINTD-GT-------EKWRFKTKKAIYATPIVSEDGT-IYVGSNDNYLYAINPD 165 (330)
T ss_dssp ----CCEEEE--TTEEEEECTTSEEEEECTT-SC-------EEEEEECSSCCCSCCEECTTSC-EEEECTTSEEEEECTT
T ss_pred CCcccCceEE--CCEEEEEecCCEEEEEcCC-CC-------EEEEEcCCCceeeeeEEcCCCE-EEEEcCCCEEEEECCC
Confidence 3333333443 4678888889999999976 41 1111122333455666676766 6667888999999998
Q ss_pred CCeeeEEecCCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeEEEEeecC-CceEEEEEeCCCEEEEEeCCCeEEE
Q psy3053 744 NHLMTQQLSDDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCNKVFE-EKLLCLSWAGEEKVILGGALGMVYL 822 (917)
Q Consensus 744 ~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~tg~~i~~~~~~-~~i~~l~~s~~~~lv~gs~dG~I~v 822 (917)
++...... .....+.++...++|...+. + +.+..+| .+++........ ..+.++..++++.+.+++.++.+..
T Consensus 166 -g~~~~~~~-~~~~~~~~~~~d~~g~l~v~-t--~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~l~v~t~~~gl~~ 239 (330)
T 3hxj_A 166 -GTEKWRFK-TNDAITSAASIGKDGTIYFG-S--DKVYAIN-PDGTEKWNFYAGYWTVTRPAISEDGTIYVTSLDGHLYA 239 (330)
T ss_dssp -SCEEEEEE-CSSCCCSCCEECTTCCEEEE-S--SSEEEEC-TTSCEEEEECCSSCCCSCCEECTTSCEEEEETTTEEEE
T ss_pred -CCEeEEEe-cCCCceeeeEEcCCCEEEEE-e--CEEEEEC-CCCcEEEEEccCCcceeceEECCCCeEEEEcCCCeEEE
Confidence 77766665 33456677777778765544 4 7899999 777666554433 4577788888889999999999999
Q ss_pred EECCCCEEEEEEecCCCceEEEeec-CCEEEEEeCCCeEEEEECcCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCc
Q psy3053 823 VDLIQVQLLKQVRAHKDAVLSLHFD-NCTMLVGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGNLVGA 901 (917)
Q Consensus 823 wdl~~~~~i~~l~~h~~~V~sis~d-g~~Lasgs~DG~I~Iwdl~tg~~l~~l~~h~~~V~slafSpdg~~LaSgs~DG~ 901 (917)
+|. +++.+..+......+.++..+ +..|..++.+|.|..+|. +++.+.........+.++..+++|. |..|+.+|.
T Consensus 240 ~~~-~g~~~~~~~~~~~~~~~~~~~~~g~l~v~t~~ggl~~~d~-~g~~~~~~~~~~~~~~~~~~d~~g~-l~~gt~~G~ 316 (330)
T 3hxj_A 240 INP-DGTEKWRFKTGKRIESSPVIGNTDTIYFGSYDGHLYAINP-DGTEKWNFETGSWIIATPVIDENGT-IYFGTRNGK 316 (330)
T ss_dssp ECT-TSCEEEEEECSSCCCSCCEECTTSCEEEECTTCEEEEECT-TSCEEEEEECSSCCCSCCEECTTCC-EEEECTTSC
T ss_pred ECC-CCCEeEEeeCCCCccccceEcCCCeEEEecCCCCEEEECC-CCcEEEEEEcCCccccceEEcCCCE-EEEEcCCCe
Confidence 974 566666665443333333333 556788888989999996 6777777665566677788877775 566889999
Q ss_pred EEEEecCcc
Q psy3053 902 PKLYATEFY 910 (917)
Q Consensus 902 V~IWdl~~~ 910 (917)
+++...+..
T Consensus 317 ~~~~~~~~~ 325 (330)
T 3hxj_A 317 FYALFNLEH 325 (330)
T ss_dssp EEEEEC---
T ss_pred EEEEecccc
Confidence 998877643
No 209
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.34 E-value=4.1e-10 Score=122.07 Aligned_cols=236 Identities=12% Similarity=0.080 Sum_probs=162.0
Q ss_pred CcceEEEEEeCCCcEEEE-------EecCCceEEEeccCCceeeeee----ccccceEEEEEeCC-CCEEEEEecccEEE
Q psy3053 580 KEAITAVAICGEGISVAS-------VGRDAMLKIHSLKTGRQERSAV----LSSMTLSSLCILPD-NCTMLVGCWDSCVV 647 (917)
Q Consensus 580 ~~~Vtsv~fSpdg~~Las-------gs~Dg~I~IWd~~t~~~~~~~~----~~~~~V~sl~~spd-~~~Lasgs~Dg~I~ 647 (917)
-....+++|+++|..+++ +..++.|.+|+..+++...... .+...+.+++++++ ++++++ +..+.|.
T Consensus 17 ~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~-~~~~~l~ 95 (314)
T 1pjx_A 17 IPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVA-DMRLGLL 95 (314)
T ss_dssp CTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEE-ETTTEEE
T ss_pred CCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEE-ECCCCEE
Confidence 345678999999987777 5778999999988776543221 14456889999999 655544 4445799
Q ss_pred EEEeccCeeeEE-ecc----CCCceeEEEecCCCCEEEEEECC---------------CeEEEEeCCCCCCCccCCccee
Q psy3053 648 IYDVECGRIVTE-LAG----HEDAISCVAWDEKRKRLISGSWD---------------CTVRVWNTGASWSHMKPSKSLV 707 (917)
Q Consensus 648 Iwdl~tg~~i~~-l~~----H~~~Vt~l~~spd~~~L~Sgs~D---------------gtI~vWdl~~~~~~~~~~~~~~ 707 (917)
+||.+ ++.... ... ....+.+++++++++..++.+.+ +.|..|+.. + ...
T Consensus 96 ~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g--------~~~ 165 (314)
T 1pjx_A 96 VVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-G--------QMI 165 (314)
T ss_dssp EEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-S--------CEE
T ss_pred EEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-C--------CEE
Confidence 99988 765433 221 12458899999999888777655 466666654 2 111
Q ss_pred eeccCCCceEEEEEe----CCCCEEEEE-ECCCeEEEEECC-CCee-----eEEecCCCC-CCeEEEEEecCCCEEEEEe
Q psy3053 708 SQLDLDNRIKCLAIS----KDNNQLAVG-TEAGELIIWSLE-NHLM-----TQQLSDDIN-ASVNGVLFSEDGCRVLSCG 775 (917)
Q Consensus 708 ~~~~h~~~V~~l~~s----pdg~~Lasg-s~dG~I~iwDl~-~~~~-----~~~l~~~h~-~~V~~v~fspdg~~L~s~s 775 (917)
....+......++++ ++++.+.++ ..++.|.+||+. +++. ...+. .+. ..+..++++++|+..++..
T Consensus 166 ~~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~-~~~~~~p~~i~~d~~G~l~v~~~ 244 (314)
T 1pjx_A 166 QVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIP-GTHEGGADGMDFDEDNNLLVANW 244 (314)
T ss_dssp EEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECC-CCSSCEEEEEEEBTTCCEEEEEE
T ss_pred EeccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECC-CCCCCCCCceEECCCCCEEEEEc
Confidence 112223456789999 999766555 567899999976 4432 22222 222 5678899999999888888
Q ss_pred CCCeEEEEECCCCeEEEEeecC-CceEEEEEeCCCE-EEEEe-CCCeEEEEECCC
Q psy3053 776 NNCMLNVYDLTTGMQVCNKVFE-EKLLCLSWAGEEK-VILGG-ALGMVYLVDLIQ 827 (917)
Q Consensus 776 ~Dg~I~iwDl~tg~~i~~~~~~-~~i~~l~~s~~~~-lv~gs-~dG~I~vwdl~~ 827 (917)
.++.|.+||..+++........ ..+.++++++++. +++++ .++.|..|++..
T Consensus 245 ~~~~i~~~d~~~g~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 245 GSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp TTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred CCCEEEEEcCCCCcEeEEEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence 8899999999867655444443 5688889887765 55544 457888888754
No 210
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.32 E-value=6.1e-10 Score=126.72 Aligned_cols=271 Identities=12% Similarity=0.046 Sum_probs=187.4
Q ss_pred CCCcEEEEEecC-----CceEEEeccCCceeeeeeccccceEEEEEeCCCCEEEEEe----------cccEEEEEEeccC
Q psy3053 590 GEGISVASVGRD-----AMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTMLVGC----------WDSCVVIYDVECG 654 (917)
Q Consensus 590 pdg~~Lasgs~D-----g~I~IWd~~t~~~~~~~~~~~~~V~sl~~spd~~~Lasgs----------~Dg~I~Iwdl~tg 654 (917)
++++.++++... +.|.+.|..+++.+..+.....+ .++++||++.++++. .++.|.++|..++
T Consensus 82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~ 159 (426)
T 3c75_H 82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTF 159 (426)
T ss_dssp CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTC
T ss_pred CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCC
Confidence 456666655542 69999999999999998877776 899999999888876 4778999999999
Q ss_pred eeeEEeccC-------CCceeEEEecCCCCEEEEEEC--CCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCC
Q psy3053 655 RIVTELAGH-------EDAISCVAWDEKRKRLISGSW--DCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDN 725 (917)
Q Consensus 655 ~~i~~l~~H-------~~~Vt~l~~spd~~~L~Sgs~--DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg 725 (917)
+.+..+.-- ......++++|||++++.+.. +++|.+.|+.+. .......... +....|++
T Consensus 160 ~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~--------kvv~~I~v~g---~~~~~p~g 228 (426)
T 3c75_H 160 LPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGK--------TFDRMLDVPD---CYHIFPAS 228 (426)
T ss_dssp CEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTT--------EEEEEEECCS---EEEEEEEE
T ss_pred cEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCC--------eEEEEEEcCC---ceeeccCC
Confidence 988876421 133567899999999999874 578999999876 2222222111 12334433
Q ss_pred -CEEEEEECCCeEEEEECCCCeeeEE----ecCCCCCC-eEEEEEecCCCEEEEEeCCCeEEEEECCCCeEEEE--eec-
Q psy3053 726 -NQLAVGTEAGELIIWSLENHLMTQQ----LSDDINAS-VNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCN--KVF- 796 (917)
Q Consensus 726 -~~Lasgs~dG~I~iwDl~~~~~~~~----l~~~h~~~-V~~v~fspdg~~L~s~s~Dg~I~iwDl~tg~~i~~--~~~- 796 (917)
..+++.+.||.+.+.+..+++.... +. ....+ ...+.+++++..++..+..+.+.+.|..++..... ...
T Consensus 229 ~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~-v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~ 307 (426)
T 3c75_H 229 PTVFYMNCRDGSLARVDFADGETKVTNTEVFH-TEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEAL 307 (426)
T ss_dssp TTEEEEEETTSSEEEEECCTTCCEEEECCCCS-CTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESS
T ss_pred CcEEEEEcCCCCEEEEECCCCcEEEEeeeeec-cCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeec
Confidence 5566677788888888766554432 11 11112 12356799999888888889999999876543211 110
Q ss_pred ----------CCceEEEEEeCC-CEEEEEeC----------CCeEEEEECCCCEEEEEEecCC-CceEEEeecCC-EEEE
Q psy3053 797 ----------EEKLLCLSWAGE-EKVILGGA----------LGMVYLVDLIQVQLLKQVRAHK-DAVLSLHFDNC-TMLV 853 (917)
Q Consensus 797 ----------~~~i~~l~~s~~-~~lv~gs~----------dG~I~vwdl~~~~~i~~l~~h~-~~V~sis~dg~-~Las 853 (917)
......++++++ +.+++... ++.|.++|..+++.+.++.... ..-..+++||+ .+++
T Consensus 308 ~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg~~P~gia~spDg~~~lyv 387 (426)
T 3c75_H 308 TEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELGHEIDSINVSQDAEPLLYA 387 (426)
T ss_dssp CTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECCSSSCEEEE
T ss_pred cccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEECCCCcCeEEEccCCCEEEEE
Confidence 111112566654 34444432 3579999999999999886432 23334488999 8888
Q ss_pred Ee-CCCeEEEEECcCCeEEEEe
Q psy3053 854 GC-WDSCVVIYDVECGRIVTEL 874 (917)
Q Consensus 854 gs-~DG~I~Iwdl~tg~~l~~l 874 (917)
+. .++.|.++|+.+++.+.++
T Consensus 388 ~n~~s~~VsVID~~t~kvv~tI 409 (426)
T 3c75_H 388 LSAGTQTLHIYDAATGEELRSV 409 (426)
T ss_dssp EETTTTEEEEEETTTCCEEEEE
T ss_pred EcCCCCeEEEEECCCCCEEEEe
Confidence 88 5899999999999999887
No 211
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.29 E-value=9e-10 Score=133.96 Aligned_cols=301 Identities=13% Similarity=0.097 Sum_probs=197.5
Q ss_pred CcEEEEEecCCceEEEeccCCceeeeeeccccc----------e-EEEEEeCCCCEEEEEecccEEEEEEeccCeeeEEe
Q psy3053 592 GISVASVGRDAMLKIHSLKTGRQERSAVLSSMT----------L-SSLCILPDNCTMLVGCWDSCVVIYDVECGRIVTEL 660 (917)
Q Consensus 592 g~~Lasgs~Dg~I~IWd~~t~~~~~~~~~~~~~----------V-~sl~~spd~~~Lasgs~Dg~I~Iwdl~tg~~i~~l 660 (917)
+..|++++.++.|..+|..+|+.+.+....... + ..+++ ++..|++++.|+.|..+|..+|+.+...
T Consensus 70 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~v~v~~~dg~l~AlDa~TG~~~W~~ 147 (689)
T 1yiq_A 70 DGVMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAV--WKGKVYVGVLDGRLEAIDAKTGQRAWSV 147 (689)
T ss_dssp TTEEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred CCEEEEEcCCCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEE--ECCEEEEEccCCEEEEEECCCCCEeeee
Confidence 557788888999999999999998776543211 0 11122 4568888999999999999999998776
Q ss_pred ccC--CCceeEEEecC---CCCEEEEEE------CCCeEEEEeCCCCCCCccCCc----ceee-----e-----------
Q psy3053 661 AGH--EDAISCVAWDE---KRKRLISGS------WDCTVRVWNTGASWSHMKPSK----SLVS-----Q----------- 709 (917)
Q Consensus 661 ~~H--~~~Vt~l~~sp---d~~~L~Sgs------~DgtI~vWdl~~~~~~~~~~~----~~~~-----~----------- 709 (917)
... ......+..+| ++ .++.++ .+|.|..||..++........ .... .
T Consensus 148 ~~~~~~~~~~~~~~sP~v~~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~ 226 (689)
T 1yiq_A 148 DTRADHKRSYTITGAPRVVNG-KVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDA 226 (689)
T ss_dssp ECCSCTTSCCBCCSCCEEETT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSST
T ss_pred cCcCCCCCCccccCCcEEECC-EEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCcccccccccccccccccCCce
Confidence 542 11111111122 44 444443 378999999988742211000 0000 0
Q ss_pred ----ccCCCceEEEEEeCCCCEEEEEECCCe-------------------EEEEECCCCeeeEEecCC-CC-------CC
Q psy3053 710 ----LDLDNRIKCLAISKDNNQLAVGTEAGE-------------------LIIWSLENHLMTQQLSDD-IN-------AS 758 (917)
Q Consensus 710 ----~~h~~~V~~l~~spdg~~Lasgs~dG~-------------------I~iwDl~~~~~~~~l~~~-h~-------~~ 758 (917)
.+.......++++|++..+++++.++. |..+|..+|+.+..+... |. ..
T Consensus 227 w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~ 306 (689)
T 1yiq_A 227 YVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQH 306 (689)
T ss_dssp HHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSC
T ss_pred eeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCC
Confidence 011111236788999999999988764 999999999998877632 21 12
Q ss_pred eEEEEEecCCC---EEEEEeCCCeEEEEECCCCeEEEEeecCCc------------------------------------
Q psy3053 759 VNGVLFSEDGC---RVLSCGNNCMLNVYDLTTGMQVCNKVFEEK------------------------------------ 799 (917)
Q Consensus 759 V~~v~fspdg~---~L~s~s~Dg~I~iwDl~tg~~i~~~~~~~~------------------------------------ 799 (917)
........+|+ .++.++.+|.++++|..+|+.+........
T Consensus 307 ~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~ 386 (689)
T 1yiq_A 307 MILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFW 386 (689)
T ss_dssp EEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTT
T ss_pred cEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcc
Confidence 22222333665 788899999999999999998854332210
Q ss_pred ----eEEEEEeCC-CEEEEEeC---------------------------------------------CCeEEEEECCCCE
Q psy3053 800 ----LLCLSWAGE-EKVILGGA---------------------------------------------LGMVYLVDLIQVQ 829 (917)
Q Consensus 800 ----i~~l~~s~~-~~lv~gs~---------------------------------------------dG~I~vwdl~~~~ 829 (917)
-..++++|+ +.+++... +|.|..||+.+++
T Consensus 387 Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~ 466 (689)
T 1yiq_A 387 GAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQ 466 (689)
T ss_dssp CSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTE
T ss_pred cccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCC
Confidence 011466654 34444321 3789999999999
Q ss_pred EEEEEecCCCceE-EEeecCCEEEEEeCCCeEEEEECcCCeEEEEecCCCCC-EEEEEEcCCCCEEEE
Q psy3053 830 LLKQVRAHKDAVL-SLHFDNCTMLVGCWDSCVVIYDVECGRIVTELAGHEDA-ISCVAWDEKRKRLIS 895 (917)
Q Consensus 830 ~i~~l~~h~~~V~-sis~dg~~Lasgs~DG~I~Iwdl~tg~~l~~l~~h~~~-V~slafSpdg~~LaS 895 (917)
.+.+...+..... .++..+..+++|+.||.++.||.++|+.+.++....+. ..-+.|+.+|+..++
T Consensus 467 ~~W~~~~~~~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~ty~~~G~qyv~ 534 (689)
T 1yiq_A 467 AAWEVPYVTIFNGGTLSTAGNLVFEGSADGRVIAYAADTGEKLWEQPAASGVMAAPVTYSVDGEQYVT 534 (689)
T ss_dssp EEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEE
T ss_pred eEeEccCCCCccCccceECCCEEEEECCCCcEEEEECCCCccceeeeCCCCcccCceEEEECCEEEEE
Confidence 9888876543222 44668889999999999999999999999988754332 234667788875443
No 212
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.28 E-value=6.1e-10 Score=135.21 Aligned_cols=300 Identities=14% Similarity=0.101 Sum_probs=199.8
Q ss_pred CcEEEEEecCCceEEEeccCCceeeeeeccccc-----------eEEEEEeCCCCEEEEEecccEEEEEEeccCeeeEEe
Q psy3053 592 GISVASVGRDAMLKIHSLKTGRQERSAVLSSMT-----------LSSLCILPDNCTMLVGCWDSCVVIYDVECGRIVTEL 660 (917)
Q Consensus 592 g~~Lasgs~Dg~I~IWd~~t~~~~~~~~~~~~~-----------V~sl~~spd~~~Lasgs~Dg~I~Iwdl~tg~~i~~l 660 (917)
+..|+.++.++.|..+|..+|+.+.+....... ...+++ ++..|++++.|+.|..+|..+|+.+..+
T Consensus 77 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~--~~~~v~v~~~dg~l~alD~~tG~~~W~~ 154 (677)
T 1kb0_A 77 DGIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVAL--WKGKVYVGAWDGRLIALDAATGKEVWHQ 154 (677)
T ss_dssp TTEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceE--ECCEEEEEcCCCEEEEEECCCCCEEeee
Confidence 556777888899999999999988776543210 112222 4668888999999999999999998887
Q ss_pred ccC-C----CceeE-EEecCCCCEEEEEEC------CCeEEEEeCCCCCCCccCCcceee--------------------
Q psy3053 661 AGH-E----DAISC-VAWDEKRKRLISGSW------DCTVRVWNTGASWSHMKPSKSLVS-------------------- 708 (917)
Q Consensus 661 ~~H-~----~~Vt~-l~~spd~~~L~Sgs~------DgtI~vWdl~~~~~~~~~~~~~~~-------------------- 708 (917)
..+ . ..+.+ ... .+..++.++. +|.|..+|..++............
T Consensus 155 ~~~~~~~~~~~~~~~p~v--~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~ 232 (677)
T 1kb0_A 155 NTFEGQKGSLTITGAPRV--FKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPS 232 (677)
T ss_dssp ETTTTCCSSCBCCSCCEE--ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGG
T ss_pred cCCcCcCcCcccccCcEE--ECCEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCcccccccccccccccccccc
Confidence 754 2 12221 111 2345555543 799999999887422110000000
Q ss_pred -----eccCCCceEEEEEeCCCCEEEEEECCC-------------------eEEEEECCCCeeeEEecCCCC--------
Q psy3053 709 -----QLDLDNRIKCLAISKDNNQLAVGTEAG-------------------ELIIWSLENHLMTQQLSDDIN-------- 756 (917)
Q Consensus 709 -----~~~h~~~V~~l~~spdg~~Lasgs~dG-------------------~I~iwDl~~~~~~~~l~~~h~-------- 756 (917)
..+.......+++++++..+++++.++ .|..+|..+|+.+..+...+.
T Consensus 233 g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~ 312 (677)
T 1kb0_A 233 GKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTST 312 (677)
T ss_dssp GCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCC
T ss_pred CceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccC
Confidence 001112224678899999999887764 599999999999888763221
Q ss_pred CCeEEEEEecCC---CEEEEEeCCCeEEEEECCCCeEEEEeecCC-----------c-e---------------------
Q psy3053 757 ASVNGVLFSEDG---CRVLSCGNNCMLNVYDLTTGMQVCNKVFEE-----------K-L--------------------- 800 (917)
Q Consensus 757 ~~V~~v~fspdg---~~L~s~s~Dg~I~iwDl~tg~~i~~~~~~~-----------~-i--------------------- 800 (917)
.....+....+| ..+++++.+|.++++|..+|+.+....... . +
T Consensus 313 ~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~ 392 (677)
T 1kb0_A 313 QPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGA 392 (677)
T ss_dssp SCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCS
T ss_pred CCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccc
Confidence 222333444477 678899999999999999999987655321 0 0
Q ss_pred ---EEEEEeCC-CEEEEEeC-------------------------------------------CCeEEEEECCCCEEEEE
Q psy3053 801 ---LCLSWAGE-EKVILGGA-------------------------------------------LGMVYLVDLIQVQLLKQ 833 (917)
Q Consensus 801 ---~~l~~s~~-~~lv~gs~-------------------------------------------dG~I~vwdl~~~~~i~~ 833 (917)
..++++++ +.+++... .|.|..||+.+++.+.+
T Consensus 393 ~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~ 472 (677)
T 1kb0_A 393 HNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWS 472 (677)
T ss_dssp SCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEE
T ss_pred cCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEee
Confidence 13566764 45555432 27899999999999888
Q ss_pred EecCCCce-EEEeecCCEEEEEeCCCeEEEEECcCCeEEEEecCCCC-CEEEEEEcCCCCEEEE
Q psy3053 834 VRAHKDAV-LSLHFDNCTMLVGCWDSCVVIYDVECGRIVTELAGHED-AISCVAWDEKRKRLIS 895 (917)
Q Consensus 834 l~~h~~~V-~sis~dg~~Lasgs~DG~I~Iwdl~tg~~l~~l~~h~~-~V~slafSpdg~~LaS 895 (917)
........ ..+..++..+++++.||.+++||..+|+.+..+....+ ...-+.+..+|+..++
T Consensus 473 ~~~~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~y~~~G~~~v~ 536 (677)
T 1kb0_A 473 VEHVSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGRQYVS 536 (677)
T ss_dssp EEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEE
T ss_pred cCCCCCCcCcceEeCCCEEEEECCCCcEEEEECCCCceeeeeeCCCCcccCCEEEEeCCEEEEE
Confidence 76432211 23466888999999999999999999999998874432 2234556778875544
No 213
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.25 E-value=3.5e-09 Score=120.63 Aligned_cols=235 Identities=14% Similarity=0.087 Sum_probs=158.8
Q ss_pred cceEEEEEeCCCcEEEEEecCCceEEEeccCCceeeeeeccccceEEEEEeCCCCEEEEEeccc--EEEEEEeccCeeeE
Q psy3053 581 EAITAVAICGEGISVASVGRDAMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTMLVGCWDS--CVVIYDVECGRIVT 658 (917)
Q Consensus 581 ~~Vtsv~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~~~~~~~~V~sl~~spd~~~Lasgs~Dg--~I~Iwdl~tg~~i~ 658 (917)
.....++++++|+++++...++.|++||..++.......... ... ++|+++++.|+++..++ .|.+++..++....
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~-~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~ 208 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFK-GGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPT 208 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETCC-BCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEE
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccCC-CCc-eeEecCCCcEEEEecCCCceEEEEEcCCCceeE
Confidence 357789999999977777778999999998776655444332 233 89999999998888766 89999988765544
Q ss_pred Ee----ccCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceee---eccCCCce--EEEEEeCC-CCEE
Q psy3053 659 EL----AGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVS---QLDLDNRI--KCLAISKD-NNQL 728 (917)
Q Consensus 659 ~l----~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~---~~~h~~~V--~~l~~spd-g~~L 728 (917)
.+ ..+...+.+++++|++..|+.+..++.|..||..++.. .... ..+....- ..++++|+ +.++
T Consensus 209 ~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~------~~~~~~~~~g~~~~~P~~~ia~~p~~g~ly 282 (409)
T 3hrp_A 209 RIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEV------TLIKQLELSGSLGTNPGPYLIYYFVDSNFY 282 (409)
T ss_dssp EEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCE------EEEEECCCCSCCCCSSCCEEEEETTTTEEE
T ss_pred EeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCE------EEEecccccCCCCCCccccEEEeCCCCEEE
Confidence 44 22456788999999655666677789999999876521 1110 11111111 38999995 5666
Q ss_pred EEEECCCeEEEEECCCCeeeEEecCCC--------------CCCeEEEEEecCCCEEEEEe-CCCeEEEEECCCCeEEEE
Q psy3053 729 AVGTEAGELIIWSLENHLMTQQLSDDI--------------NASVNGVLFSEDGCRVLSCG-NNCMLNVYDLTTGMQVCN 793 (917)
Q Consensus 729 asgs~dG~I~iwDl~~~~~~~~l~~~h--------------~~~V~~v~fspdg~~L~s~s-~Dg~I~iwDl~tg~~i~~ 793 (917)
++-..++.|..|+.... ...+.... -.....++++++|+++++-. .++.|+.|+..++.....
T Consensus 283 v~d~~~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v~~~ 360 (409)
T 3hrp_A 283 MSDQNLSSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYVSTV 360 (409)
T ss_dssp EEETTTTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEEEEE
T ss_pred EEeCCCCEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEEEEE
Confidence 66667789999997654 22222111 23578999999999777777 789999999888865443
Q ss_pred eec---------------CCceEEEEEeCCCEEEEEe-CCCeEEEEEC
Q psy3053 794 KVF---------------EEKLLCLSWAGEEKVILGG-ALGMVYLVDL 825 (917)
Q Consensus 794 ~~~---------------~~~i~~l~~s~~~~lv~gs-~dG~I~vwdl 825 (917)
... -.....+++++++.++++. .++.|+.+++
T Consensus 361 ~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 361 AGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp EECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred eCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence 332 1236677777766555443 3455655543
No 214
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.24 E-value=1.4e-10 Score=130.20 Aligned_cols=173 Identities=12% Similarity=0.059 Sum_probs=136.6
Q ss_pred ceEEEEEeCCCcEEEEEecCCceEEEeccCCc---------e--eeeeeccccceEEEEEeCCCCEEEEEecccEEEEEE
Q psy3053 582 AITAVAICGEGISVASVGRDAMLKIHSLKTGR---------Q--ERSAVLSSMTLSSLCILPDNCTMLVGCWDSCVVIYD 650 (917)
Q Consensus 582 ~Vtsv~fSpdg~~Lasgs~Dg~I~IWd~~t~~---------~--~~~~~~~~~~V~sl~~spd~~~Lasgs~Dg~I~Iwd 650 (917)
++..+++++.+.++++|+.++ +.+|++++.+ . ..... ... |+.++| |++.|+++ .++.|++||
T Consensus 39 ~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~~~-lp~-V~~l~f--d~~~L~v~-~~~~l~v~d 112 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKE-IPD-VIFVCF--HGDQVLVS-TRNALYSLD 112 (388)
T ss_dssp CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEE-CTT-EEEEEE--ETTEEEEE-ESSEEEEEE
T ss_pred cccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccceEEee-CCC-eeEEEE--CCCEEEEE-cCCcEEEEE
Confidence 688999999999999999885 5569876443 1 12222 344 999999 89999999 889999999
Q ss_pred eccCeeeEEeccCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEE
Q psy3053 651 VECGRIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAV 730 (917)
Q Consensus 651 l~tg~~i~~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Las 730 (917)
+.+.........|...+.++.+.+. .+++++.||+|.+||+.++. .. .+...|+|++|||+| ++.
T Consensus 113 v~sl~~~~~~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~--------~~---~~~~~Vs~v~WSpkG--~~v 177 (388)
T 1xip_A 113 LEELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKS--------TK---QLAQNVTSFDVTNSQ--LAV 177 (388)
T ss_dssp SSSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCC--------EE---EEEESEEEEEECSSE--EEE
T ss_pred chhhhccCccceeecceeeEEecCC--CEEEEECCCCEEEEEccCCc--------cc---cccCCceEEEEcCCc--eEE
Confidence 9887666667778888998887754 38999999999999998652 11 134589999999999 788
Q ss_pred EECCCeEEEEECCCCee--eEEec------C--CCCCCeEEEEEecCCCEEEEEe
Q psy3053 731 GTEAGELIIWSLENHLM--TQQLS------D--DINASVNGVLFSEDGCRVLSCG 775 (917)
Q Consensus 731 gs~dG~I~iwDl~~~~~--~~~l~------~--~h~~~V~~v~fspdg~~L~s~s 775 (917)
|..||.+.+|+...+.. ...+. . +|...|.++.|.+++.++++-+
T Consensus 178 g~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y~ 232 (388)
T 1xip_A 178 LLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVFG 232 (388)
T ss_dssp EETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEEE
T ss_pred EEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEEc
Confidence 99999999999988775 45552 1 3678899999999998888643
No 215
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.23 E-value=5.8e-09 Score=116.75 Aligned_cols=264 Identities=12% Similarity=0.063 Sum_probs=178.2
Q ss_pred CCCEEEEEecccEEEEEEeccCeeeEEeccC---------CCcee-EEEecCCCCEEEEEECCCeEEEEeCCCCCCCccC
Q psy3053 633 DNCTMLVGCWDSCVVIYDVECGRIVTELAGH---------EDAIS-CVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKP 702 (917)
Q Consensus 633 d~~~Lasgs~Dg~I~Iwdl~tg~~i~~l~~H---------~~~Vt-~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~ 702 (917)
++..+++++.++.|..+|.++|+.+...... ...+. .+.. ++..++.++.++.|..+|..++....
T Consensus 52 ~~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~~g~l~a~d~~tG~~~W-- 127 (376)
T 3q7m_A 52 ADNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTV--SGGHVYIGSEKAQVYALNTSDGTVAW-- 127 (376)
T ss_dssp ETTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEEE--ETTEEEEEETTSEEEEEETTTCCEEE--
T ss_pred ECCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccCceE--eCCEEEEEcCCCEEEEEECCCCCEEE--
Confidence 3567788888999999999999988766542 12232 2222 45678889999999999998773111
Q ss_pred CcceeeeccCCCce-EEEEEeCCCCEEEEEECCCeEEEEECCCCeeeEEecCCCCCC----eEEEEEecCCCEEEEEeCC
Q psy3053 703 SKSLVSQLDLDNRI-KCLAISKDNNQLAVGTEAGELIIWSLENHLMTQQLSDDINAS----VNGVLFSEDGCRVLSCGNN 777 (917)
Q Consensus 703 ~~~~~~~~~h~~~V-~~l~~spdg~~Lasgs~dG~I~iwDl~~~~~~~~l~~~h~~~----V~~v~fspdg~~L~s~s~D 777 (917)
.......+ ...... +..+++++.+|.+..+|..+++.+.......... ....... +..+++++.+
T Consensus 128 ------~~~~~~~~~~~p~~~--~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~--~~~v~~g~~~ 197 (376)
T 3q7m_A 128 ------QTKVAGEALSRPVVS--DGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTA--FGAAVVGGDN 197 (376)
T ss_dssp ------EEECSSCCCSCCEEE--TTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEE--TTEEEECCTT
T ss_pred ------EEeCCCceEcCCEEE--CCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEE--CCEEEEEcCC
Confidence 11111111 111222 4578888999999999999999887775221100 0112222 4467788889
Q ss_pred CeEEEEECCCCeEEEEeecCCc-----------e-EEEEEeCCCEEEEEeCCCeEEEEECCCCEEEEEEecCCCceEEEe
Q psy3053 778 CMLNVYDLTTGMQVCNKVFEEK-----------L-LCLSWAGEEKVILGGALGMVYLVDLIQVQLLKQVRAHKDAVLSLH 845 (917)
Q Consensus 778 g~I~iwDl~tg~~i~~~~~~~~-----------i-~~l~~s~~~~lv~gs~dG~I~vwdl~~~~~i~~l~~h~~~V~sis 845 (917)
+.+..+|..+|+.+........ + ...... ++.+++++.+|.+..+|..+++.+..... ....++.
T Consensus 198 g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~-~~~v~~~~~~g~l~~~d~~tG~~~w~~~~--~~~~~~~ 274 (376)
T 3q7m_A 198 GRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVV-NGVVFALAYNGNLTALDLRSGQIMWKREL--GSVNDFI 274 (376)
T ss_dssp TEEEEEETTTCCEEEEEECCC-----------CCCCCCEEE-TTEEEEECTTSCEEEEETTTCCEEEEECC--CCEEEEE
T ss_pred CEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEE-CCEEEEEecCcEEEEEECCCCcEEeeccC--CCCCCce
Confidence 9999999999998876654321 1 111122 45888899999999999999998866542 3345566
Q ss_pred ecCCEEEEEeCCCeEEEEECcCCeEEEEecC-CCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCc-ceEEEE
Q psy3053 846 FDNCTMLVGCWDSCVVIYDVECGRIVTELAG-HEDAISCVAWDEKRKRLISGNLVGAPKLYATEF-YLLYVL 915 (917)
Q Consensus 846 ~dg~~Lasgs~DG~I~Iwdl~tg~~l~~l~~-h~~~V~slafSpdg~~LaSgs~DG~V~IWdl~~-~ll~~L 915 (917)
.++..+++++.+|.|..+|..+|+.+..... ....+.+... .+..|+.++.+|.|.++|.++ ..+...
T Consensus 275 ~~~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~--~~~~l~v~~~~g~l~~~d~~tG~~~~~~ 344 (376)
T 3q7m_A 275 VDGNRIYLVDQNDRVMALTIDGGVTLWTQSDLLHRLLTSPVL--YNGNLVVGDSEGYLHWINVEDGRFVAQQ 344 (376)
T ss_dssp EETTEEEEEETTCCEEEEETTTCCEEEEECTTTTSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred EECCEEEEEcCCCeEEEEECCCCcEEEeecccCCCcccCCEE--ECCEEEEEeCCCeEEEEECCCCcEEEEE
Confidence 6788899999999999999999998877652 2222222333 356888999999999999764 455443
No 216
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.20 E-value=1.2e-09 Score=133.09 Aligned_cols=244 Identities=13% Similarity=0.052 Sum_probs=158.1
Q ss_pred cCCCceeEEEecCCCCEEEEEE-----CCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEEEECCCe
Q psy3053 662 GHEDAISCVAWDEKRKRLISGS-----WDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGE 736 (917)
Q Consensus 662 ~H~~~Vt~l~~spd~~~L~Sgs-----~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~dG~ 736 (917)
+|...+..++|||||++|+-+. .+.+|++||+.++. .............++|+ ||+.|+.++.+..
T Consensus 126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~--------~~~~~~~~~k~~~~~Ws-Dg~~l~y~~~~~~ 196 (693)
T 3iuj_A 126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQ--------PLETPLKDVKFSGISWL-GNEGFFYSSYDKP 196 (693)
T ss_dssp TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCS--------EEEEEEEEEESCCCEEE-TTTEEEEEESSCC
T ss_pred CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCC--------CCccccCCceeccEEEe-CCCEEEEEEecCc
Confidence 3556788999999999888432 33579999998872 11111111113567899 9999999887743
Q ss_pred -------------EEEEECCCCee--eEEecC-C-CCCCeEEEEEecCCCEEEEEeC----CCeEEEEECCCC--eEEEE
Q psy3053 737 -------------LIIWSLENHLM--TQQLSD-D-INASVNGVLFSEDGCRVLSCGN----NCMLNVYDLTTG--MQVCN 793 (917)
Q Consensus 737 -------------I~iwDl~~~~~--~~~l~~-~-h~~~V~~v~fspdg~~L~s~s~----Dg~I~iwDl~tg--~~i~~ 793 (917)
|++|++.++.. ...... . +...+.++.|+|||++|+.... ++.++++|+.++ .....
T Consensus 197 ~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l 276 (693)
T 3iuj_A 197 DGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTV 276 (693)
T ss_dssp C-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEE
T ss_pred ccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEE
Confidence 99999987643 222221 2 3445788999999998865543 248999999766 33322
Q ss_pred eecCCceEE-EEEeCCCEEEEEeCC---CeEEEEECCCCEE--EEEEecCCCceEEEeecCCEEEEEeC-CC--eEEEEE
Q psy3053 794 KVFEEKLLC-LSWAGEEKVILGGAL---GMVYLVDLIQVQL--LKQVRAHKDAVLSLHFDNCTMLVGCW-DS--CVVIYD 864 (917)
Q Consensus 794 ~~~~~~i~~-l~~s~~~~lv~gs~d---G~I~vwdl~~~~~--i~~l~~h~~~V~sis~dg~~Lasgs~-DG--~I~Iwd 864 (917)
......... +...++..++.+..+ +.|..+|+.++.. ...+..|...+..++++++.|+.... +| .|++|+
T Consensus 277 ~~~~~~~~~~~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~s~~g~~lv~~~~~~g~~~l~~~d 356 (693)
T 3iuj_A 277 QGDLDADVSLVDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVLTVHSGSGYLFAEYMVDATARVEQFD 356 (693)
T ss_dssp ECSSSSCEEEEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEETTEEEEEEEETTEEEEEEEC
T ss_pred eCCCCceEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEEEEEEECCEEEEEEEECCeeEEEEEE
Confidence 223333333 333344233444333 6899999987653 23455555444488999988776655 44 688999
Q ss_pred CcCCeEEEEec-CCCCCEEEEEEcCCCCEEEEEeCC----CcEEEEecCcceEEEE
Q psy3053 865 VECGRIVTELA-GHEDAISCVAWDEKRKRLISGNLV----GAPKLYATEFYLLYVL 915 (917)
Q Consensus 865 l~tg~~l~~l~-~h~~~V~slafSpdg~~LaSgs~D----G~V~IWdl~~~ll~~L 915 (917)
+..+. ...+. .+.+.+..+.++++++.|+....+ +.+..||+.+.....+
T Consensus 357 ~~g~~-~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~~~~l 411 (693)
T 3iuj_A 357 YEGKR-VREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGAISLY 411 (693)
T ss_dssp TTSCE-EEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCCEEEE
T ss_pred CCCCe-eEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCeEEEE
Confidence 88554 44443 345568888889988877765544 8899999876654444
No 217
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.20 E-value=1.7e-08 Score=109.42 Aligned_cols=223 Identities=10% Similarity=0.042 Sum_probs=152.2
Q ss_pred CCCceeEEEecCCCC-EEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEEEECCCeEEEEE
Q psy3053 663 HEDAISCVAWDEKRK-RLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGELIIWS 741 (917)
Q Consensus 663 H~~~Vt~l~~spd~~-~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~dG~I~iwD 741 (917)
+..-..+..|++++. .+++...++.|..||..++. . ........+.+++++++|+++++ . ++.|.+||
T Consensus 11 ~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~--------~-~~~~~~~~~~~i~~~~dG~l~v~-~-~~~l~~~d 79 (297)
T 3g4e_A 11 NCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQ--------V-QRVTMDAPVSSVALRQSGGYVAT-I-GTKFCALN 79 (297)
T ss_dssp CCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCC--------E-EEEECSSCEEEEEEBTTSSEEEE-E-TTEEEEEE
T ss_pred CCccccCCeEECCCCEEEEEECCCCEEEEEECCCCc--------E-EEEeCCCceEEEEECCCCCEEEE-E-CCeEEEEE
Confidence 444566889998544 55666678999999987651 1 12234567999999999995554 4 56799999
Q ss_pred CCCCeeeEEecC---CCCCCeEEEEEecCCCEEEEEeC-----------CCeEEEEECCCCeEEEEeecCCceEEEEEeC
Q psy3053 742 LENHLMTQQLSD---DINASVNGVLFSEDGCRVLSCGN-----------NCMLNVYDLTTGMQVCNKVFEEKLLCLSWAG 807 (917)
Q Consensus 742 l~~~~~~~~l~~---~h~~~V~~v~fspdg~~L~s~s~-----------Dg~I~iwDl~tg~~i~~~~~~~~i~~l~~s~ 807 (917)
..+++....... .....+++++++|+|++.++... .+.|..++.. ++.............++|++
T Consensus 80 ~~~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~-g~~~~~~~~~~~pngi~~sp 158 (297)
T 3g4e_A 80 WKEQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPD-HHVKKYFDQVDISNGLDWSL 158 (297)
T ss_dssp TTTTEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTT-SCEEEEEEEESBEEEEEECT
T ss_pred CCCCcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECC-CCEEEEeeccccccceEEcC
Confidence 988765433321 12345789999999997665432 2344445543 34333333334567899998
Q ss_pred CCE-E-EEEeCCCeEEEEEC--CCCEE-----EEEEecCCCceEEE--eecCCEEEEEeCCCeEEEEECcCCeEEEEecC
Q psy3053 808 EEK-V-ILGGALGMVYLVDL--IQVQL-----LKQVRAHKDAVLSL--HFDNCTMLVGCWDSCVVIYDVECGRIVTELAG 876 (917)
Q Consensus 808 ~~~-l-v~gs~dG~I~vwdl--~~~~~-----i~~l~~h~~~V~si--s~dg~~Lasgs~DG~I~Iwdl~tg~~l~~l~~ 876 (917)
++. + ++.+.++.|.+|++ .++.. ...+..+......+ +++|++.++...++.|..||..+++.+..+..
T Consensus 159 dg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~ 238 (297)
T 3g4e_A 159 DHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVKL 238 (297)
T ss_dssp TSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEEC
T ss_pred CCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEEC
Confidence 774 4 45556789999987 45543 22222233445555 56788777777788999999999999999988
Q ss_pred CCCCEEEEEEc-CCCCEEEEEe
Q psy3053 877 HEDAISCVAWD-EKRKRLISGN 897 (917)
Q Consensus 877 h~~~V~slafS-pdg~~LaSgs 897 (917)
+...+++++|. |+++.|+.++
T Consensus 239 p~~~~t~~~f~g~d~~~L~vt~ 260 (297)
T 3g4e_A 239 PVDKTTSCCFGGKNYSEMYVTC 260 (297)
T ss_dssp SSSBEEEEEEESGGGCEEEEEE
T ss_pred CCCCceEEEEeCCCCCEEEEEc
Confidence 77889999998 8888776554
No 218
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.19 E-value=1e-08 Score=116.79 Aligned_cols=232 Identities=13% Similarity=0.060 Sum_probs=161.1
Q ss_pred CceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEEEECCC--eEEEEEC
Q psy3053 665 DAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAG--ELIIWSL 742 (917)
Q Consensus 665 ~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~dG--~I~iwDl 742 (917)
.....++|+++++.+++...++.|++||..++ .+........... ++|+++++.+++++.++ .|..++.
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g--------~~~~~~~~~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~ 201 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDN--------KVTTVHPGFKGGK-PAVTKDKQRVYSIGWEGTHTVYVYMK 201 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTTT--------EEEEEEETCCBCB-CEECTTSSEEEEEBSSTTCEEEEEEG
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCCC--------EEEEeeccCCCCc-eeEecCCCcEEEEecCCCceEEEEEc
Confidence 46789999999987777777899999998765 2222222233334 99999999998888766 7999998
Q ss_pred CCCeeeEEe---cCCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeEEEE----eecC-Cce-E-EEEEeC-CCEE
Q psy3053 743 ENHLMTQQL---SDDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCN----KVFE-EKL-L-CLSWAG-EEKV 811 (917)
Q Consensus 743 ~~~~~~~~l---~~~h~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~tg~~i~~----~~~~-~~i-~-~l~~s~-~~~l 811 (917)
..+.....+ .......+.+++++|++..|+++..++.|+.||..++..... .... ... . .+++++ ++.+
T Consensus 202 ~~~~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~l 281 (409)
T 3hrp_A 202 ASGWAPTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNF 281 (409)
T ss_dssp GGTTCEEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEE
T ss_pred CCCceeEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEE
Confidence 766543333 112456778999999555666677788999999987754322 1111 111 2 899998 4666
Q ss_pred EEE-eCCCeEEEEECCCCEEEEEEecCC---------------CceEEE--eecCCEEEEEe-CCCeEEEEECcCCeEEE
Q psy3053 812 ILG-GALGMVYLVDLIQVQLLKQVRAHK---------------DAVLSL--HFDNCTMLVGC-WDSCVVIYDVECGRIVT 872 (917)
Q Consensus 812 v~g-s~dG~I~vwdl~~~~~i~~l~~h~---------------~~V~si--s~dg~~Lasgs-~DG~I~Iwdl~tg~~l~ 872 (917)
+++ ...+.|+.|+.... +..+.++. .....+ +++|+++++-+ .++.|+.|++.++...
T Consensus 282 yv~d~~~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v~- 358 (409)
T 3hrp_A 282 YMSDQNLSSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYVS- 358 (409)
T ss_dssp EEEETTTTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEEE-
T ss_pred EEEeCCCCEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEEE-
Confidence 555 45689999987654 33333332 224444 66888777777 7899999998778743
Q ss_pred EecCC---------------CCCEEEEEEcCCCCEEEEEeCCCcEEEEecC
Q psy3053 873 ELAGH---------------EDAISCVAWDEKRKRLISGNLVGAPKLYATE 908 (917)
Q Consensus 873 ~l~~h---------------~~~V~slafSpdg~~LaSgs~DG~V~IWdl~ 908 (917)
.+.++ -.....++++++|.++++-..++.|+.++++
T Consensus 359 ~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~e 409 (409)
T 3hrp_A 359 TVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAVE 409 (409)
T ss_dssp EEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEEC
T ss_pred EEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEeC
Confidence 34333 2458999999998888888888899888764
No 219
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.18 E-value=3e-09 Score=121.04 Aligned_cols=257 Identities=12% Similarity=0.066 Sum_probs=177.9
Q ss_pred ccceeeeccCCcceEEEEEeCCCcEEEEEe----------cCCceEEEeccCCceeeeeecc-------ccceEEEEEeC
Q psy3053 570 LEPLHFCHSHKEAITAVAICGEGISVASVG----------RDAMLKIHSLKTGRQERSAVLS-------SMTLSSLCILP 632 (917)
Q Consensus 570 l~~~~~l~~H~~~Vtsv~fSpdg~~Lasgs----------~Dg~I~IWd~~t~~~~~~~~~~-------~~~V~sl~~sp 632 (917)
.+.+..+..-..+ .+++||||++++++. .++.|.++|..+++.+..+... ...-..++++|
T Consensus 109 ~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~sp 186 (426)
T 3c75_H 109 GRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTP 186 (426)
T ss_dssp TEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECT
T ss_pred CEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccCCCcceEEEcC
Confidence 3445555544455 899999999888876 4678999999999988877643 22345788999
Q ss_pred CCCEEEEEec--ccEEEEEEeccCeeeEEeccCCCceeEEEecCC-CCEEEEEECCCeEEEEeCCCCCCCccCCcceeee
Q psy3053 633 DNCTMLVGCW--DSCVVIYDVECGRIVTELAGHEDAISCVAWDEK-RKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQ 709 (917)
Q Consensus 633 d~~~Lasgs~--Dg~I~Iwdl~tg~~i~~l~~H~~~Vt~l~~spd-~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~ 709 (917)
||++++++.. ++.|.+.|+.+++.+..+.--. +....|+ ...+++.+.||.+.+.+..++....... ... .
T Consensus 187 DGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g----~~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~-~~~-~ 260 (426)
T 3c75_H 187 DNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPD----CYHIFPASPTVFYMNCRDGSLARVDFADGETKVTNT-EVF-H 260 (426)
T ss_dssp TSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS----EEEEEEEETTEEEEEETTSSEEEEECCTTCCEEEEC-CCC-S
T ss_pred CCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCC----ceeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEee-eee-c
Confidence 9999999874 5889999999999988876421 1223332 2566777788888888874331100000 000 0
Q ss_pred ccCCCceEEEEEeCCCCEEEEEECCCeEEEEECCCCeeeE--EecC--C-------CCCCeEEEEEecCCCEEEEEeC--
Q psy3053 710 LDLDNRIKCLAISKDNNQLAVGTEAGELIIWSLENHLMTQ--QLSD--D-------INASVNGVLFSEDGCRVLSCGN-- 776 (917)
Q Consensus 710 ~~h~~~V~~l~~spdg~~Lasgs~dG~I~iwDl~~~~~~~--~l~~--~-------h~~~V~~v~fspdg~~L~s~s~-- 776 (917)
.+.......+.+.+++..++..+..|.+.+.|+....... .+.. . .......++++|+++.++++..
T Consensus 261 v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~ 340 (426)
T 3c75_H 261 TEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQR 340 (426)
T ss_dssp CTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEEC
T ss_pred cCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEeccc
Confidence 0001111235678898888888888999999987654221 1110 0 0112234789999988777642
Q ss_pred --------CCeEEEEECCCCeEEEEeecCCceEEEEEeCCCE--EEEEe-CCCeEEEEECCCCEEEEEE
Q psy3053 777 --------NCMLNVYDLTTGMQVCNKVFEEKLLCLSWAGEEK--VILGG-ALGMVYLVDLIQVQLLKQV 834 (917)
Q Consensus 777 --------Dg~I~iwDl~tg~~i~~~~~~~~i~~l~~s~~~~--lv~gs-~dG~I~vwdl~~~~~i~~l 834 (917)
++.|.++|..+++.+..+........+.+++++. ++++. .++.|.++|+.+++.++++
T Consensus 341 ~~gthk~~s~~VsVID~~T~kvv~~I~vg~~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~kvv~tI 409 (426)
T 3c75_H 341 DEWKHKAASRFVVVLNAETGERINKIELGHEIDSINVSQDAEPLLYALSAGTQTLHIYDAATGEELRSV 409 (426)
T ss_dssp CTTCTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred ccccccCCCCEEEEEECCCCeEEEEEECCCCcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCCEEEEe
Confidence 3579999999999999988888889999998765 55665 4899999999999999987
No 220
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.16 E-value=3.8e-08 Score=108.20 Aligned_cols=219 Identities=11% Similarity=0.012 Sum_probs=147.8
Q ss_pred ceeEEEecCCCC-EEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEEEECCCeEEEEECCC
Q psy3053 666 AISCVAWDEKRK-RLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGELIIWSLEN 744 (917)
Q Consensus 666 ~Vt~l~~spd~~-~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~dG~I~iwDl~~ 744 (917)
...+.+|+|++. .+++...++.|..||..++. .. .......+.+++++++|+++++. .+ .|.+||..+
T Consensus 50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~--------~~-~~~~~~~v~~i~~~~dg~l~v~~-~~-gl~~~d~~~ 118 (326)
T 2ghs_A 50 LGEGPTFDPASGTAWWFNILERELHELHLASGR--------KT-VHALPFMGSALAKISDSKQLIAS-DD-GLFLRDTAT 118 (326)
T ss_dssp BEEEEEEETTTTEEEEEEGGGTEEEEEETTTTE--------EE-EEECSSCEEEEEEEETTEEEEEE-TT-EEEEEETTT
T ss_pred CCcCCeEeCCCCEEEEEECCCCEEEEEECCCCc--------EE-EEECCCcceEEEEeCCCeEEEEE-CC-CEEEEECCC
Confidence 346778999754 55666678899999987651 11 12234679999999999877654 44 499999988
Q ss_pred CeeeEEecCC---CCCCeEEEEEecCCCEEEEEeC------CCeEEEEECCCCeEEEEeecCCceEEEEEeCCCE-EE-E
Q psy3053 745 HLMTQQLSDD---INASVNGVLFSEDGCRVLSCGN------NCMLNVYDLTTGMQVCNKVFEEKLLCLSWAGEEK-VI-L 813 (917)
Q Consensus 745 ~~~~~~l~~~---h~~~V~~v~fspdg~~L~s~s~------Dg~I~iwDl~tg~~i~~~~~~~~i~~l~~s~~~~-lv-~ 813 (917)
++........ ....+.+++++|+|++.++... .+.|..++ +++.............++|++++. ++ +
T Consensus 119 g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~~~~~~~~~~~i~~s~dg~~lyv~ 196 (326)
T 2ghs_A 119 GVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTKLFADISIPNSICFSPDGTTGYFV 196 (326)
T ss_dssp CCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEEEEEEESSEEEEEECTTSCEEEEE
T ss_pred CcEEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEEeeCCCcccCCeEEcCCCCEEEEE
Confidence 8754332211 1246889999999987665542 25666677 565443333334567899998874 43 4
Q ss_pred EeCCCeEEEEECC--CC-E-----EEEEEecCCCceEEE--eecCCEEEEEeCCCeEEEEECcCCeEEEEecCCCCCEEE
Q psy3053 814 GGALGMVYLVDLI--QV-Q-----LLKQVRAHKDAVLSL--HFDNCTMLVGCWDSCVVIYDVECGRIVTELAGHEDAISC 883 (917)
Q Consensus 814 gs~dG~I~vwdl~--~~-~-----~i~~l~~h~~~V~si--s~dg~~Lasgs~DG~I~Iwdl~tg~~l~~l~~h~~~V~s 883 (917)
.+.++.|.+||.. ++ . ....+.........+ +.+|.+.++...++.|.+|+. +++.+..+..+...+++
T Consensus 197 ~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g~~~~~i~~~~~~~~~ 275 (326)
T 2ghs_A 197 DTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVPGKQTTC 275 (326)
T ss_dssp ETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECSCSBEEE
T ss_pred ECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECC-CCCEEEEEECCCCCcEE
Confidence 4557899999985 55 2 233332233444555 457877777667789999998 67777778777778999
Q ss_pred EEEc-CCCCEEEEEeC
Q psy3053 884 VAWD-EKRKRLISGNL 898 (917)
Q Consensus 884 lafS-pdg~~LaSgs~ 898 (917)
++|+ ++++.|+.++.
T Consensus 276 ~af~g~d~~~L~vt~~ 291 (326)
T 2ghs_A 276 PAFIGPDASRLLVTSA 291 (326)
T ss_dssp EEEESTTSCEEEEEEB
T ss_pred EEEecCCCCEEEEEec
Confidence 9998 88887765543
No 221
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.15 E-value=3e-08 Score=107.35 Aligned_cols=226 Identities=8% Similarity=-0.005 Sum_probs=153.2
Q ss_pred cCCcceEEEEEeCCC-cEEEEEecCCceEEEeccCCceeeeeeccccceEEEEEeCCCCEEEEEecccEEEEEEeccCee
Q psy3053 578 SHKEAITAVAICGEG-ISVASVGRDAMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTMLVGCWDSCVVIYDVECGRI 656 (917)
Q Consensus 578 ~H~~~Vtsv~fSpdg-~~Lasgs~Dg~I~IWd~~t~~~~~~~~~~~~~V~sl~~spd~~~Lasgs~Dg~I~Iwdl~tg~~ 656 (917)
.+..--.+..|++++ .++++...++.|..||..+++.. .+. ....+.+++++++++++++ . ++.|.+||.++++.
T Consensus 10 ~~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~-~~~~~~~i~~~~dG~l~v~-~-~~~l~~~d~~~g~~ 85 (297)
T 3g4e_A 10 ENCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQ-RVT-MDAPVSSVALRQSGGYVAT-I-GTKFCALNWKEQSA 85 (297)
T ss_dssp CCCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEE-EEE-CSSCEEEEEEBTTSSEEEE-E-TTEEEEEETTTTEE
T ss_pred cCCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcEE-EEe-CCCceEEEEECCCCCEEEE-E-CCeEEEEECCCCcE
Confidence 334455678899964 55666667889999999877652 222 3456889999999995554 3 67899999988875
Q ss_pred eEEecc----CCCceeEEEecCCCCEEEEEECC---------CeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeC
Q psy3053 657 VTELAG----HEDAISCVAWDEKRKRLISGSWD---------CTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISK 723 (917)
Q Consensus 657 i~~l~~----H~~~Vt~l~~spd~~~L~Sgs~D---------gtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp 723 (917)
...... ....+.+++++|+|++.++...+ ..-.+|.+.... ..............++|+|
T Consensus 86 ~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g-------~~~~~~~~~~~pngi~~sp 158 (297)
T 3g4e_A 86 VVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDH-------HVKKYFDQVDISNGLDWSL 158 (297)
T ss_dssp EEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTS-------CEEEEEEEESBEEEEEECT
T ss_pred EEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCC-------CEEEEeeccccccceEEcC
Confidence 433322 12357899999999977654332 334566554321 1111222334567899999
Q ss_pred CCCEEE-EEECCCeEEEEEC--CCCeee-----EEecCCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeEEEEee
Q psy3053 724 DNNQLA-VGTEAGELIIWSL--ENHLMT-----QQLSDDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCNKV 795 (917)
Q Consensus 724 dg~~La-sgs~dG~I~iwDl--~~~~~~-----~~l~~~h~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~tg~~i~~~~ 795 (917)
+++.+. +.+.++.|.+|++ .++... ..+. ........++++++|++.++...++.|..||..+|+.+..+.
T Consensus 159 dg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~-~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~ 237 (297)
T 3g4e_A 159 DHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLE-KEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVK 237 (297)
T ss_dssp TSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECC-GGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEE
T ss_pred CCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECC-CCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEE
Confidence 998665 4556789999987 455432 1222 234567899999999888888788899999999899888877
Q ss_pred cC-CceEEEEEe-CC-CEEEEEe
Q psy3053 796 FE-EKLLCLSWA-GE-EKVILGG 815 (917)
Q Consensus 796 ~~-~~i~~l~~s-~~-~~lv~gs 815 (917)
.+ ..+++++|. ++ +.+++++
T Consensus 238 ~p~~~~t~~~f~g~d~~~L~vt~ 260 (297)
T 3g4e_A 238 LPVDKTTSCCFGGKNYSEMYVTC 260 (297)
T ss_dssp CSSSBEEEEEEESGGGCEEEEEE
T ss_pred CCCCCceEEEEeCCCCCEEEEEc
Confidence 66 578999997 33 2444443
No 222
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.15 E-value=6.3e-09 Score=113.17 Aligned_cols=236 Identities=11% Similarity=0.035 Sum_probs=155.5
Q ss_pred eeeeccCCcceEEEEEeCCCc-EEEEEecCCceEEEeccCCceeeeeeccccceEEEEEeCCCCEEEEEecccEEEEEEe
Q psy3053 573 LHFCHSHKEAITAVAICGEGI-SVASVGRDAMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTMLVGCWDSCVVIYDV 651 (917)
Q Consensus 573 ~~~l~~H~~~Vtsv~fSpdg~-~Lasgs~Dg~I~IWd~~t~~~~~~~~~~~~~V~sl~~spd~~~Lasgs~Dg~I~Iwdl 651 (917)
+..+..+.....+.+|+++|+ ++++...++.|..|+. +++ ...+..+...+..++++++|+++++...++.|.+|+.
T Consensus 37 ~~~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~-~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~ 114 (305)
T 3dr2_A 37 LLTLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGT-VDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDA 114 (305)
T ss_dssp CEEEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSC-EEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECT
T ss_pred eEEEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCC-EEEEeCCCCccceeeECCCCCEEEEECCCCEEEEECC
Confidence 344445556678899999998 5667667889999987 444 3445555667889999999997777666788999998
Q ss_pred ccCeeeEEec---c-CCCceeEEEecCCCCEEEE----EEC-------------CCeEEEEeCCCCCCCccCCcceeeec
Q psy3053 652 ECGRIVTELA---G-HEDAISCVAWDEKRKRLIS----GSW-------------DCTVRVWNTGASWSHMKPSKSLVSQL 710 (917)
Q Consensus 652 ~tg~~i~~l~---~-H~~~Vt~l~~spd~~~L~S----gs~-------------DgtI~vWdl~~~~~~~~~~~~~~~~~ 710 (917)
+ ++...... + ....+.+++++++|+..+| |.. .+.|..||..++. .....
T Consensus 115 ~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~--------~~~~~ 185 (305)
T 3dr2_A 115 D-GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSP--------LQRMA 185 (305)
T ss_dssp T-SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCC--------CEEEE
T ss_pred C-CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCc--------EEEEe
Confidence 6 55432221 1 1134678999999998886 332 2456667664441 11111
Q ss_pred cCCCceEEEEEeCCCCEEEEEECC------CeEEEEECCCCeee--EEecCCCCCCeEEEEEecCCCEEEEEeCCCeEEE
Q psy3053 711 DLDNRIKCLAISKDNNQLAVGTEA------GELIIWSLENHLMT--QQLSDDINASVNGVLFSEDGCRVLSCGNNCMLNV 782 (917)
Q Consensus 711 ~h~~~V~~l~~spdg~~Lasgs~d------G~I~iwDl~~~~~~--~~l~~~h~~~V~~v~fspdg~~L~s~s~Dg~I~i 782 (917)
.......++|+|+++.|+++... +.|.+|++..+... ..+.....+....++++++|++ .+++.+ .|.+
T Consensus 186 -~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~l-wv~~~~-gv~~ 262 (305)
T 3dr2_A 186 -DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWL-WSSSGT-GVCV 262 (305)
T ss_dssp -EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSCE-EECCSS-EEEE
T ss_pred -cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCCE-EEecCC-cEEE
Confidence 23456789999999988777665 68999998765411 1121122345567899999984 444444 5999
Q ss_pred EECCCCeEEEEeecCCceEEEEEeCCC-EEEEEeCCCeEEEEE
Q psy3053 783 YDLTTGMQVCNKVFEEKLLCLSWAGEE-KVILGGALGMVYLVD 824 (917)
Q Consensus 783 wDl~tg~~i~~~~~~~~i~~l~~s~~~-~lv~gs~dG~I~vwd 824 (917)
|+. .++.+..+.....+.++++.+++ .+++++.+ .+..++
T Consensus 263 ~~~-~g~~~~~~~~~~~~~~~~f~~d~~~L~it~~~-~l~~~~ 303 (305)
T 3dr2_A 263 FDS-DGQLLGHIPTPGTASNCTFDQAQQRLFITGGP-CLWMLP 303 (305)
T ss_dssp ECT-TSCEEEEEECSSCCCEEEECTTSCEEEEEETT-EEEEEE
T ss_pred ECC-CCCEEEEEECCCceeEEEEeCCCCEEEEEcCC-eEEEEE
Confidence 998 56676666666677888887654 45555554 444433
No 223
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.13 E-value=4e-09 Score=128.58 Aligned_cols=241 Identities=10% Similarity=0.038 Sum_probs=158.1
Q ss_pred ccCCcceEEEEEeCCCcEEEEEe-----cCCceEEEeccCCceeeeeeccccceEEEEEeCCCCEEEEEeccc-------
Q psy3053 577 HSHKEAITAVAICGEGISVASVG-----RDAMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTMLVGCWDS------- 644 (917)
Q Consensus 577 ~~H~~~Vtsv~fSpdg~~Lasgs-----~Dg~I~IWd~~t~~~~~~~~~~~~~V~sl~~spd~~~Lasgs~Dg------- 644 (917)
.+|...+.+++|||||++||-+. ....|++||+.+|+.+.. ........+++|+ |++.|+.++.+.
T Consensus 125 ~~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~-~~~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~ 202 (693)
T 3iuj_A 125 PDGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLET-PLKDVKFSGISWL-GNEGFFYSSYDKPDGSELS 202 (693)
T ss_dssp TTSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEE-EEEEEESCCCEEE-TTTEEEEEESSCCC-----
T ss_pred CCCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcc-ccCCceeccEEEe-CCCEEEEEEecCccccccc
Confidence 44667889999999999888443 235799999999986543 2222224678899 999999988774
Q ss_pred ------EEEEEEeccCee----eEEecc-CCCceeEEEecCCCCEEEEEEC----CCeEEEEeCCCCCCCccCCcceeee
Q psy3053 645 ------CVVIYDVECGRI----VTELAG-HEDAISCVAWDEKRKRLISGSW----DCTVRVWNTGASWSHMKPSKSLVSQ 709 (917)
Q Consensus 645 ------~I~Iwdl~tg~~----i~~l~~-H~~~Vt~l~~spd~~~L~Sgs~----DgtI~vWdl~~~~~~~~~~~~~~~~ 709 (917)
.|++|++.++.. +..... |...+..+.|+|||++|+..+. ++.|.+||+.++. ......
T Consensus 203 ~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~------~~~~~l 276 (693)
T 3iuj_A 203 ARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQEN------APLLTV 276 (693)
T ss_dssp --CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTT------CCCEEE
T ss_pred ccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCC------CceEEE
Confidence 499999887642 333333 5556788999999998865442 2589999987652 122223
Q ss_pred ccCCCceEEEEEeCCCCEEEEEEC-C---CeEEEEECCCCee--eEEecCCCCCCeEEEEEecCCCEEEEEeCCC---eE
Q psy3053 710 LDLDNRIKCLAISKDNNQLAVGTE-A---GELIIWSLENHLM--TQQLSDDINASVNGVLFSEDGCRVLSCGNNC---ML 780 (917)
Q Consensus 710 ~~h~~~V~~l~~spdg~~Lasgs~-d---G~I~iwDl~~~~~--~~~l~~~h~~~V~~v~fspdg~~L~s~s~Dg---~I 780 (917)
..+....... ++++|+.++..+. + +.|..+|+.++.. ...+. .+...+. .|+++++.|+....++ .|
T Consensus 277 ~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~-~~~~~~~--~~s~~g~~lv~~~~~~g~~~l 352 (693)
T 3iuj_A 277 QGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLI-PERQQVL--TVHSGSGYLFAEYMVDATARV 352 (693)
T ss_dssp ECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEE-CCCSSCE--EEEEETTEEEEEEEETTEEEE
T ss_pred eCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEe-cCCCCEE--EEEEECCEEEEEEEECCeeEE
Confidence 3344444444 6676766655443 2 6799999988654 23444 3444444 8999998887766544 68
Q ss_pred EEEECCCCeEEEEeecC--CceEEEEEeCCC-EEEEEeCC----CeEEEEECCCCEE
Q psy3053 781 NVYDLTTGMQVCNKVFE--EKLLCLSWAGEE-KVILGGAL----GMVYLVDLIQVQL 830 (917)
Q Consensus 781 ~iwDl~tg~~i~~~~~~--~~i~~l~~s~~~-~lv~gs~d----G~I~vwdl~~~~~ 830 (917)
++||+.++. ...+..+ +.+..+++++++ .++....+ +.++.||+.+++.
T Consensus 353 ~~~d~~g~~-~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~~ 408 (693)
T 3iuj_A 353 EQFDYEGKR-VREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGAI 408 (693)
T ss_dssp EEECTTSCE-EEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCCE
T ss_pred EEEECCCCe-eEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCeE
Confidence 999987553 3444433 345556665443 34444333 8899999987754
No 224
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.13 E-value=1.6e-09 Score=121.69 Aligned_cols=170 Identities=9% Similarity=0.069 Sum_probs=130.2
Q ss_pred ceEEEEEeCCCCEEEEEecccEEEEEEeccCe---------ee-EEeccCCCceeEEEecCCCCEEEEEECCCeEEEEeC
Q psy3053 624 TLSSLCILPDNCTMLVGCWDSCVVIYDVECGR---------IV-TELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNT 693 (917)
Q Consensus 624 ~V~sl~~spd~~~Lasgs~Dg~I~Iwdl~tg~---------~i-~~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl 693 (917)
++..+++++...++++|+.++ +.+|++++.+ .. .....+.+ |+.++| +++.|+++ .++.|++||+
T Consensus 39 ~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f--d~~~L~v~-~~~~l~v~dv 113 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF--HGDQVLVS-TRNALYSLDL 113 (388)
T ss_dssp CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE--ETTEEEEE-ESSEEEEEES
T ss_pred cccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE--CCCEEEEE-cCCcEEEEEc
Confidence 688999999999999999886 5569976543 11 12224666 999999 88999998 8899999998
Q ss_pred CCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEEEECCCeEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEE
Q psy3053 694 GASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLS 773 (917)
Q Consensus 694 ~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~dG~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s 773 (917)
.+.. .......+...+.++.+.+. .+++++.||.|.+||+.++.... +...|++++|||+| ++.
T Consensus 114 ~sl~-------~~~~~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~~~-----~~~~Vs~v~WSpkG--~~v 177 (388)
T 1xip_A 114 EELS-------EFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQ-----LAQNVTSFDVTNSQ--LAV 177 (388)
T ss_dssp SSTT-------CEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEE-----EEESEEEEEECSSE--EEE
T ss_pred hhhh-------ccCccceeecceeeEEecCC--CEEEEECCCCEEEEEccCCcccc-----ccCCceEEEEcCCc--eEE
Confidence 7652 22223455666777776654 38889999999999999877643 34589999999999 678
Q ss_pred EeCCCeEEEEECCCCeE--EEEe------e----cCCceEEEEEeCCCEEEEE
Q psy3053 774 CGNNCMLNVYDLTTGMQ--VCNK------V----FEEKLLCLSWAGEEKVILG 814 (917)
Q Consensus 774 ~s~Dg~I~iwDl~tg~~--i~~~------~----~~~~i~~l~~s~~~~lv~g 814 (917)
|..||.+++|+...+.. ...+ . +...+.++.|.+++.+++.
T Consensus 178 g~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~ 230 (388)
T 1xip_A 178 LLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAV 230 (388)
T ss_dssp EETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEE
T ss_pred EEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEE
Confidence 99999999999887775 4444 1 4567999999988776653
No 225
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.10 E-value=1.1e-08 Score=124.30 Aligned_cols=277 Identities=12% Similarity=0.073 Sum_probs=185.1
Q ss_pred CCEEEEEecccEEEEEEeccCeeeEEeccCCCc-----------eeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccC
Q psy3053 634 NCTMLVGCWDSCVVIYDVECGRIVTELAGHEDA-----------ISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKP 702 (917)
Q Consensus 634 ~~~Lasgs~Dg~I~Iwdl~tg~~i~~l~~H~~~-----------Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~ 702 (917)
+..+++++.++.|..+|..+|+.+..+...... ...+++ ++..|+.++.|+.|..+|..++......
T Consensus 77 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~--~~~~v~v~~~dg~l~alD~~tG~~~W~~ 154 (677)
T 1kb0_A 77 DGIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVAL--WKGKVYVGAWDGRLIALDAATGKEVWHQ 154 (677)
T ss_dssp TTEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceE--ECCEEEEEcCCCEEEEEECCCCCEEeee
Confidence 456777778899999999999998877643211 112333 3568888999999999999887321110
Q ss_pred CcceeeeccCCCceEE-EEEeCCCCEEEEEEC------CCeEEEEECCCCeeeEEecCCCCC------------------
Q psy3053 703 SKSLVSQLDLDNRIKC-LAISKDNNQLAVGTE------AGELIIWSLENHLMTQQLSDDINA------------------ 757 (917)
Q Consensus 703 ~~~~~~~~~h~~~V~~-l~~spdg~~Lasgs~------dG~I~iwDl~~~~~~~~l~~~h~~------------------ 757 (917)
.... .......+.+ ..+ .+..+++++. +|.|+.+|..+|+.+..+......
T Consensus 155 ~~~~--~~~~~~~~~~~p~v--~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~ 230 (677)
T 1kb0_A 155 NTFE--GQKGSLTITGAPRV--FKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWD 230 (677)
T ss_dssp ETTT--TCCSSCBCCSCCEE--ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSC
T ss_pred cCCc--CcCcCcccccCcEE--ECCEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCcccccccccccccccccc
Confidence 0000 0000011111 111 1345555553 689999999999998877522111
Q ss_pred -------------CeEEEEEecCCCEEEEEeCCC-------------------eEEEEECCCCeEEEEeecCC-------
Q psy3053 758 -------------SVNGVLFSEDGCRVLSCGNNC-------------------MLNVYDLTTGMQVCNKVFEE------- 798 (917)
Q Consensus 758 -------------~V~~v~fspdg~~L~s~s~Dg-------------------~I~iwDl~tg~~i~~~~~~~------- 798 (917)
....++++|++..++.++.++ .|..+|..+|+.+.......
T Consensus 231 ~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~ 310 (677)
T 1kb0_A 231 PSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYT 310 (677)
T ss_dssp GGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCC
T ss_pred ccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccc
Confidence 113578899988988887664 59999999999887765321
Q ss_pred ---ceEEEEE--eCC--CEEEEEeCCCeEEEEECCCCEEEEEEecCCCc-------------------------------
Q psy3053 799 ---KLLCLSW--AGE--EKVILGGALGMVYLVDLIQVQLLKQVRAHKDA------------------------------- 840 (917)
Q Consensus 799 ---~i~~l~~--s~~--~~lv~gs~dG~I~vwdl~~~~~i~~l~~h~~~------------------------------- 840 (917)
....+.. ++. ..+++++.+|.++++|..+|+.+.........
T Consensus 311 ~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~ 390 (677)
T 1kb0_A 311 STQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPY 390 (677)
T ss_dssp CCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTT
T ss_pred cCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcc
Confidence 1222222 221 36888999999999999999988766522100
Q ss_pred ------eEEEeecCCEEEEEeC-------------------------------------------CCeEEEEECcCCeEE
Q psy3053 841 ------VLSLHFDNCTMLVGCW-------------------------------------------DSCVVIYDVECGRIV 871 (917)
Q Consensus 841 ------V~sis~dg~~Lasgs~-------------------------------------------DG~I~Iwdl~tg~~l 871 (917)
-.++++++..+++... .|.|..||+.+++.+
T Consensus 391 G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~ 470 (677)
T 1kb0_A 391 GAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAA 470 (677)
T ss_dssp CSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEE
T ss_pred cccCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcEE
Confidence 1244667777777543 278999999999998
Q ss_pred EEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecC-cceEEEEeC
Q psy3053 872 TELAGHEDAISCVAWDEKRKRLISGNLVGAPKLYATE-FYLLYVLTV 917 (917)
Q Consensus 872 ~~l~~h~~~V~slafSpdg~~LaSgs~DG~V~IWdl~-~~ll~~Ltv 917 (917)
.... +..++.+..++.++..+++++.||.+++||.. +..++.+.+
T Consensus 471 W~~~-~~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~ 516 (677)
T 1kb0_A 471 WSVE-HVSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPT 516 (677)
T ss_dssp EEEE-ESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred eecC-CCCCCcCcceEeCCCEEEEECCCCcEEEEECCCCceeeeeeC
Confidence 8876 33445555667788899999999999999997 667777753
No 226
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=99.08 E-value=5e-09 Score=114.25 Aligned_cols=267 Identities=12% Similarity=0.039 Sum_probs=176.0
Q ss_pred ccCCcceEEEEEeCCCcEEEEEecCCceEEEeccCCceeeeeeccccceEEEEEeCCCCEEEEEecccEEEEEEeccCee
Q psy3053 577 HSHKEAITAVAICGEGISVASVGRDAMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTMLVGCWDSCVVIYDVECGRI 656 (917)
Q Consensus 577 ~~H~~~Vtsv~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~~~~~~~~V~sl~~spd~~~Lasgs~Dg~I~Iwdl~tg~~ 656 (917)
..+...+.++...++|... .++.+ |..+|. +++................+. +..+.+|+.++.+..+|.. ++.
T Consensus 56 ~~~~~~~~~~~~~~~g~l~-v~t~~--l~~~d~-~g~~~~~~~~~~~~~~~~~~~--~~~l~v~t~~~~l~~~d~~-g~~ 128 (330)
T 3hxj_A 56 KSGEIIECRPSIGKDGTIY-FGSDK--VYAINP-DGTEKWRFDTKKAIVSDFTIF--EDILYVTSMDGHLYAINTD-GTE 128 (330)
T ss_dssp CGGGEEEECCEETTTTEEC-CSSCE--EEEECC-CGGGGGGSCC-----CCEEEE--TTEEEEECTTSEEEEECTT-SCE
T ss_pred ecCCCcccceEEecCCcEE-EecCc--EEEECC-CCcEEEEEECCCCcccCceEE--CCEEEEEecCCEEEEEcCC-CCE
Confidence 3344556778887777644 44444 888885 666655554443333344444 5567888889999999988 877
Q ss_pred eEEeccCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEEEECCCe
Q psy3053 657 VTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGE 736 (917)
Q Consensus 657 i~~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~dG~ 736 (917)
......+...+.++...+++. ++.++.++.|..+|.. +. ...........+.++...+++.+.+ ++ +.
T Consensus 129 ~~~~~~~~~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g~-------~~~~~~~~~~~~~~~~~d~~g~l~v-~t--~~ 196 (330)
T 3hxj_A 129 KWRFKTKKAIYATPIVSEDGT-IYVGSNDNYLYAINPD-GT-------EKWRFKTNDAITSAASIGKDGTIYF-GS--DK 196 (330)
T ss_dssp EEEEECSSCCCSCCEECTTSC-EEEECTTSEEEEECTT-SC-------EEEEEECSSCCCSCCEECTTCCEEE-ES--SS
T ss_pred EEEEcCCCceeeeeEEcCCCE-EEEEcCCCEEEEECCC-CC-------EeEEEecCCCceeeeEEcCCCEEEE-Ee--CE
Confidence 777666666677777776665 6667788999999986 41 1111122234566677777777554 44 78
Q ss_pred EEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCc-eEEEEEeCCCEEEEEe
Q psy3053 737 LIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCNKVFEEK-LLCLSWAGEEKVILGG 815 (917)
Q Consensus 737 I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~tg~~i~~~~~~~~-i~~l~~s~~~~lv~gs 815 (917)
+..+| .+++...... .....+.++...++|. +..++.++.+..+|. ++........... +.++..++++.+.+++
T Consensus 197 l~~~d-~~g~~~~~~~-~~~~~~~~~~~~~~g~-l~v~t~~~gl~~~~~-~g~~~~~~~~~~~~~~~~~~~~~g~l~v~t 272 (330)
T 3hxj_A 197 VYAIN-PDGTEKWNFY-AGYWTVTRPAISEDGT-IYVTSLDGHLYAINP-DGTEKWRFKTGKRIESSPVIGNTDTIYFGS 272 (330)
T ss_dssp EEEEC-TTSCEEEEEC-CSSCCCSCCEECTTSC-EEEEETTTEEEEECT-TSCEEEEEECSSCCCSCCEECTTSCEEEEC
T ss_pred EEEEC-CCCcEEEEEc-cCCcceeceEECCCCe-EEEEcCCCeEEEECC-CCCEeEEeeCCCCccccceEcCCCeEEEec
Confidence 99999 7777766665 3446678888888874 555667788888874 5555555444332 3445667678999999
Q ss_pred CCCeEEEEECCCCEEEEEEecCCCceEEEee-cCCEEEEEeCCCeEEEEECcC
Q psy3053 816 ALGMVYLVDLIQVQLLKQVRAHKDAVLSLHF-DNCTMLVGCWDSCVVIYDVEC 867 (917)
Q Consensus 816 ~dG~I~vwdl~~~~~i~~l~~h~~~V~sis~-dg~~Lasgs~DG~I~Iwdl~t 867 (917)
.+|.|..+|. +++.+..+......+.++.. .+..|..|+.+|.+++...+.
T Consensus 273 ~~ggl~~~d~-~g~~~~~~~~~~~~~~~~~~d~~g~l~~gt~~G~~~~~~~~~ 324 (330)
T 3hxj_A 273 YDGHLYAINP-DGTEKWNFETGSWIIATPVIDENGTIYFGTRNGKFYALFNLE 324 (330)
T ss_dssp TTCEEEEECT-TSCEEEEEECSSCCCSCCEECTTCCEEEECTTSCEEEEEC--
T ss_pred CCCCEEEECC-CCcEEEEEEcCCccccceEEcCCCEEEEEcCCCeEEEEeccc
Confidence 9999999996 77777666655555555533 344577789999998877653
No 227
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.08 E-value=1.5e-08 Score=110.23 Aligned_cols=222 Identities=10% Similarity=-0.004 Sum_probs=150.5
Q ss_pred cceEEEEEeCCCC-EEEEEecccEEEEEEeccCeeeEEeccCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCcc
Q psy3053 623 MTLSSLCILPDNC-TMLVGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMK 701 (917)
Q Consensus 623 ~~V~sl~~spd~~-~Lasgs~Dg~I~Iwdl~tg~~i~~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~ 701 (917)
......+|+|+++ +++++..++.|..|+. +++ ...+..+...+.+++++++|+.+++...++.|.+|+.. +. .
T Consensus 45 ~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~-~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g~--~- 118 (305)
T 3dr2_A 45 TWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGT-VDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-GQ--A- 118 (305)
T ss_dssp SSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSC-EEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SC--E-
T ss_pred cCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCC-EEEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC-CC--E-
Confidence 3456788999998 5667777899999987 454 34455566789999999999866665566889999975 31 0
Q ss_pred CCcceeee-c-cCCCceEEEEEeCCCCEEEE----EEC-------------CCeEEEEECCCCeeeEEecCCCCCCeEEE
Q psy3053 702 PSKSLVSQ-L-DLDNRIKCLAISKDNNQLAV----GTE-------------AGELIIWSLENHLMTQQLSDDINASVNGV 762 (917)
Q Consensus 702 ~~~~~~~~-~-~h~~~V~~l~~spdg~~Las----gs~-------------dG~I~iwDl~~~~~~~~l~~~h~~~V~~v 762 (917)
...... . .....+..++++++|++.++ |.. .+.|..+|..+++..... .......+
T Consensus 119 --~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~---~~~~p~gl 193 (305)
T 3dr2_A 119 --HLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA---DLDHPNGL 193 (305)
T ss_dssp --EEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE---EESSEEEE
T ss_pred --EEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe---cCCCCcce
Confidence 011100 0 11234678999999998876 332 356888888766544332 23456789
Q ss_pred EEecCCCEEEEEeCC------CeEEEEECCCCeEEEEee----cCCceEEEEEeCCCEEEEEeCCCeEEEEECCCCEEEE
Q psy3053 763 LFSEDGCRVLSCGNN------CMLNVYDLTTGMQVCNKV----FEEKLLCLSWAGEEKVILGGALGMVYLVDLIQVQLLK 832 (917)
Q Consensus 763 ~fspdg~~L~s~s~D------g~I~iwDl~tg~~i~~~~----~~~~i~~l~~s~~~~lv~gs~dG~I~vwdl~~~~~i~ 832 (917)
+|+|+++.|+++... +.|.+|++..+....... .......+++++++.+.+++.+ .|.+|+. +++.+.
T Consensus 194 ~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~lwv~~~~-gv~~~~~-~g~~~~ 271 (305)
T 3dr2_A 194 AFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWLWSSSGT-GVCVFDS-DGQLLG 271 (305)
T ss_dssp EECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSCEEECCSS-EEEEECT-TSCEEE
T ss_pred EEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCCEEEecCC-cEEEECC-CCCEEE
Confidence 999999988877665 789999987654211111 1234556888888888887754 5999998 577777
Q ss_pred EEecCCCceEEE--eecCCEEEEEeCCC
Q psy3053 833 QVRAHKDAVLSL--HFDNCTMLVGCWDS 858 (917)
Q Consensus 833 ~l~~h~~~V~si--s~dg~~Lasgs~DG 858 (917)
.+..+. .+.++ +++++.|..++.++
T Consensus 272 ~~~~~~-~~~~~~f~~d~~~L~it~~~~ 298 (305)
T 3dr2_A 272 HIPTPG-TASNCTFDQAQQRLFITGGPC 298 (305)
T ss_dssp EEECSS-CCCEEEECTTSCEEEEEETTE
T ss_pred EEECCC-ceeEEEEeCCCCEEEEEcCCe
Confidence 776554 34444 45788888887764
No 228
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=99.07 E-value=1.3e-06 Score=107.91 Aligned_cols=322 Identities=14% Similarity=0.106 Sum_probs=210.8
Q ss_pred CcceEEEEEeCCCcEEEEEecCCceEEEeccCCceeeeee-------ccccceEEEEEeCCCCEEEEEecccEEEEEEec
Q psy3053 580 KEAITAVAICGEGISVASVGRDAMLKIHSLKTGRQERSAV-------LSSMTLSSLCILPDNCTMLVGCWDSCVVIYDVE 652 (917)
Q Consensus 580 ~~~Vtsv~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~~~-------~~~~~V~sl~~spd~~~Lasgs~Dg~I~Iwdl~ 652 (917)
...|.++...++|.+.+ |+.++-+..|+..+++...... .....|.++...++|.+. .|+.+ -|.+|+..
T Consensus 214 ~~~i~~i~~d~~g~lwi-gt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lW-igt~~-Gl~~~~~~ 290 (795)
T 4a2l_A 214 TKQIQAILQQSPTRIWV-ATEGAGLFLINPKTKEIKNYLHSPSNPKSISSNYIRSLAMDSQNRLW-IGTFN-DLNIYHEG 290 (795)
T ss_dssp CCCEEEEEEEETTEEEE-EEBSSCEEEEETTTTEEEEECCCTTCTTSCSCSBEEEEEECTTSCEE-EEESS-CEEEEETT
T ss_pred CCeeEEEEEcCCCCEEE-EECCCCeEEEeCCCCeEEEeecCCCCccccCCCeEEEEEEcCCCCEE-EEeCC-hhheEcCC
Confidence 45788898888887555 4444448889987665432211 124568888888777644 45555 58889988
Q ss_pred cCeeeEEecc-------CCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCC
Q psy3053 653 CGRIVTELAG-------HEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDN 725 (917)
Q Consensus 653 tg~~i~~l~~-------H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg 725 (917)
+++....... ....|.++...++|. |..|+.++-|..|+..+..-........ ...-....|.++...++|
T Consensus 291 ~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~-~~~l~~~~V~~i~~d~~g 368 (795)
T 4a2l_A 291 TDSFASYSSNPVENGSLSQRSVRSIFMDSQGG-MWLGTYFGGLNYYHPIRNRFKNIRNIPY-KNSLSDNVVSCIVEDKDK 368 (795)
T ss_dssp TTEEEEECCCTTSTTSCSSSCEEEEEECTTSC-EEEEESSSCEEEECGGGGSSEEECCCTT-SSSCSCSSEEEEEECTTS
T ss_pred CCeEEEEecCCCCCCCCCCCcEEEEEEeCCcC-EEEEECCCCeEEeCCCcccceEEcCCCC-CCCCCCCeeEEEEECCCC
Confidence 7765433211 235799999988775 5567777888899865431000000000 001124568999988887
Q ss_pred CEEEEEECCCeEEEEECCCCeeeEEecC-------CCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeEEEEee---
Q psy3053 726 NQLAVGTEAGELIIWSLENHLMTQQLSD-------DINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCNKV--- 795 (917)
Q Consensus 726 ~~Lasgs~dG~I~iwDl~~~~~~~~l~~-------~h~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~tg~~i~~~~--- 795 (917)
. |.+|+.++-|..||..++........ .....|.+++..++|..|..|+.++-|..+|..+++......
T Consensus 369 ~-lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~ 447 (795)
T 4a2l_A 369 N-LWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQRNS 447 (795)
T ss_dssp C-EEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEECTTTS
T ss_pred C-EEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeecCCC
Confidence 6 55678887899999887765443221 124678999998888857777877789999998876543321
Q ss_pred --cCCceEEEEEeCCCEEEEEeCCCeEEEEECCCCEEEEEEec------CCCceEEEee--cCCEEEEEeCCCeEEEEEC
Q psy3053 796 --FEEKLLCLSWAGEEKVILGGALGMVYLVDLIQVQLLKQVRA------HKDAVLSLHF--DNCTMLVGCWDSCVVIYDV 865 (917)
Q Consensus 796 --~~~~i~~l~~s~~~~lv~gs~dG~I~vwdl~~~~~i~~l~~------h~~~V~sis~--dg~~Lasgs~DG~I~Iwdl 865 (917)
....|.++..++++.+.+|+. +.+.+||..+++....... ....|.++.. +|. +..|+. +.+..|+.
T Consensus 448 ~l~~~~v~~i~~d~~g~lwigt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~-lWigt~-~Gl~~~~~ 524 (795)
T 4a2l_A 448 QLVNENVYAILPDGEGNLWLGTL-SALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKR-LWIGGE-EGLSVFKQ 524 (795)
T ss_dssp CCSCSCEEEEEECSSSCEEEEES-SCEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCC-EEEEES-SCEEEEEE
T ss_pred CcCCCeeEEEEECCCCCEEEEec-CceeEEeCCCCeEEEccccccccccCCceEEEEEECCCCC-EEEEeC-CceEEEeC
Confidence 235688999998889999888 5689999988765432211 2356788844 455 444555 45889998
Q ss_pred cCCeEEEEec-------CCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcceEEE
Q psy3053 866 ECGRIVTELA-------GHEDAISCVAWDEKRKRLISGNLVGAPKLYATEFYLLYV 914 (917)
Q Consensus 866 ~tg~~l~~l~-------~h~~~V~slafSpdg~~LaSgs~DG~V~IWdl~~~ll~~ 914 (917)
.+++. .+. .....|.++..+++|...+++. . -+..|+.+......
T Consensus 525 ~~~~~--~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT~-~-Gl~~~d~~~~~~~~ 576 (795)
T 4a2l_A 525 EGLDI--QKASILPVSNVTKLFTNCIYEASNGIIWVGTR-E-GFYCFNEKDKQIKR 576 (795)
T ss_dssp ETTEE--EECCCSCSCGGGGSCEEEEEECTTSCEEEEES-S-CEEEEETTTTEEEE
T ss_pred CCCeE--EEecCCCCCCCCCCeeEEEEECCCCCEEEEeC-C-CceeECCCCCcEEE
Confidence 87776 332 1345799999999998666543 3 57788876654443
No 229
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.07 E-value=1.7e-07 Score=103.05 Aligned_cols=219 Identities=11% Similarity=0.045 Sum_probs=145.4
Q ss_pred ceEEEEEeCCCc-EEEEEecCCceEEEeccCCceeeeeeccccceEEEEEeCCCCEEEEEecccEEEEEEeccCeeeEEe
Q psy3053 582 AITAVAICGEGI-SVASVGRDAMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTMLVGCWDSCVVIYDVECGRIVTEL 660 (917)
Q Consensus 582 ~Vtsv~fSpdg~-~Lasgs~Dg~I~IWd~~t~~~~~~~~~~~~~V~sl~~spd~~~Lasgs~Dg~I~Iwdl~tg~~i~~l 660 (917)
-..+.+|+|++. .+++...++.|..|+..+++.. .+. ....+.+++++++++++++. . +.|.+||..+++.....
T Consensus 50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~-~~~~v~~i~~~~dg~l~v~~-~-~gl~~~d~~~g~~~~~~ 125 (326)
T 2ghs_A 50 LGEGPTFDPASGTAWWFNILERELHELHLASGRKT-VHA-LPFMGSALAKISDSKQLIAS-D-DGLFLRDTATGVLTLHA 125 (326)
T ss_dssp BEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEE-CSSCEEEEEEEETTEEEEEE-T-TEEEEEETTTCCEEEEE
T ss_pred CCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEE-EEE-CCCcceEEEEeCCCeEEEEE-C-CCEEEEECCCCcEEEEe
Confidence 346788999754 5566667889999998876543 222 23568899999999877654 3 44999999888754332
Q ss_pred cc---C-CCceeEEEecCCCCEEEEEEC------CCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEE
Q psy3053 661 AG---H-EDAISCVAWDEKRKRLISGSW------DCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAV 730 (917)
Q Consensus 661 ~~---H-~~~Vt~l~~spd~~~L~Sgs~------DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Las 730 (917)
.. . ...+.+++++++|+.+++... .+.|..++ ++ ..............++|+|+++.++.
T Consensus 126 ~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g--------~~~~~~~~~~~~~~i~~s~dg~~lyv 195 (326)
T 2ghs_A 126 ELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KG--------KVTKLFADISIPNSICFSPDGTTGYF 195 (326)
T ss_dssp CSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TT--------EEEEEEEEESSEEEEEECTTSCEEEE
T ss_pred eCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CC--------cEEEeeCCCcccCCeEEcCCCCEEEE
Confidence 21 1 235889999999987765542 23444454 22 11111122234678999999987755
Q ss_pred E-ECCCeEEEEECC--CC-ee-----eEEecCCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeEEEEeecCC-ce
Q psy3053 731 G-TEAGELIIWSLE--NH-LM-----TQQLSDDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCNKVFEE-KL 800 (917)
Q Consensus 731 g-s~dG~I~iwDl~--~~-~~-----~~~l~~~h~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~tg~~i~~~~~~~-~i 800 (917)
+ +.++.|.+||+. ++ .. ...+. .....+..++++++|.+.++...++.|..||. +++.+..+.... .+
T Consensus 196 ~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~-~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g~~~~~i~~~~~~~ 273 (326)
T 2ghs_A 196 VDTKVNRLMRVPLDARTGLPTGKAEVFIDST-GIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVPGKQT 273 (326)
T ss_dssp EETTTCEEEEEEBCTTTCCBSSCCEEEEECT-TSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECSCSBE
T ss_pred EECCCCEEEEEEcccccCCcccCceEEEECC-CCCCCCCeeEECCCCCEEEEEeCCCEEEEECC-CCCEEEEEECCCCCc
Confidence 5 456899999986 55 31 22222 23456788999999988777777789999998 566666665544 58
Q ss_pred EEEEEe-CCC-EEEEEeC
Q psy3053 801 LCLSWA-GEE-KVILGGA 816 (917)
Q Consensus 801 ~~l~~s-~~~-~lv~gs~ 816 (917)
.+++++ +++ .+++++.
T Consensus 274 ~~~af~g~d~~~L~vt~~ 291 (326)
T 2ghs_A 274 TCPAFIGPDASRLLVTSA 291 (326)
T ss_dssp EEEEEESTTSCEEEEEEB
T ss_pred EEEEEecCCCCEEEEEec
Confidence 899997 543 4544443
No 230
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.06 E-value=2e-08 Score=122.10 Aligned_cols=276 Identities=12% Similarity=0.082 Sum_probs=180.8
Q ss_pred CCEEEEEecccEEEEEEeccCeeeEEeccCCCc----------e-eEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccC
Q psy3053 634 NCTMLVGCWDSCVVIYDVECGRIVTELAGHEDA----------I-SCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKP 702 (917)
Q Consensus 634 ~~~Lasgs~Dg~I~Iwdl~tg~~i~~l~~H~~~----------V-t~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~ 702 (917)
+..+++++.++.|..+|..+|+.+..+..+... + ..++. .+..++.++.|+.|..+|..++......
T Consensus 70 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~v~v~~~dg~l~AlDa~TG~~~W~~ 147 (689)
T 1yiq_A 70 DGVMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAV--WKGKVYVGVLDGRLEAIDAKTGQRAWSV 147 (689)
T ss_dssp TTEEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred CCEEEEEcCCCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEE--ECCEEEEEccCCEEEEEECCCCCEeeee
Confidence 557777888999999999999998887643221 1 11222 3468888999999999999887422110
Q ss_pred CcceeeeccCCCceEE-EEEeCCCCEEEEEE------CCCeEEEEECCCCeeeEEecCCCC-------------------
Q psy3053 703 SKSLVSQLDLDNRIKC-LAISKDNNQLAVGT------EAGELIIWSLENHLMTQQLSDDIN------------------- 756 (917)
Q Consensus 703 ~~~~~~~~~h~~~V~~-l~~spdg~~Lasgs------~dG~I~iwDl~~~~~~~~l~~~h~------------------- 756 (917)
.... .......+.+ ..+ .++ .+++++ .+|.|..||..+|+.+..+.....
T Consensus 148 ~~~~--~~~~~~~~~~sP~v-~~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~ 223 (689)
T 1yiq_A 148 DTRA--DHKRSYTITGAPRV-VNG-KVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWF 223 (689)
T ss_dssp ECCS--CTTSCCBCCSCCEE-ETT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCC
T ss_pred cCcC--CCCCCccccCCcEE-ECC-EEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCcccccccccccccccccC
Confidence 0000 0000011111 011 133 455543 368999999999998877652110
Q ss_pred -----------CCeEEEEEecCCCEEEEEeCCCe-------------------EEEEECCCCeEEEEeecC---------
Q psy3053 757 -----------ASVNGVLFSEDGCRVLSCGNNCM-------------------LNVYDLTTGMQVCNKVFE--------- 797 (917)
Q Consensus 757 -----------~~V~~v~fspdg~~L~s~s~Dg~-------------------I~iwDl~tg~~i~~~~~~--------- 797 (917)
.....++++|++..++.++.++. |..+|..+|+.+......
T Consensus 224 g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~ 303 (689)
T 1yiq_A 224 GDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTA 303 (689)
T ss_dssp SSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCC
T ss_pred CceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccC
Confidence 11125788998889999887764 999999999998776532
Q ss_pred -CceEEEEEeCCC----EEEEEeCCCeEEEEECCCCEEEEEEecCC----------------------------------
Q psy3053 798 -EKLLCLSWAGEE----KVILGGALGMVYLVDLIQVQLLKQVRAHK---------------------------------- 838 (917)
Q Consensus 798 -~~i~~l~~s~~~----~lv~gs~dG~I~vwdl~~~~~i~~l~~h~---------------------------------- 838 (917)
..........++ .++.++.+|.++++|..+|+.+.......
T Consensus 304 ~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p 383 (689)
T 1yiq_A 304 TQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTP 383 (689)
T ss_dssp CSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESS
T ss_pred CCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCC
Confidence 112222211122 57788999999999999999875432111
Q ss_pred -------CceEEEeecCCEEEEEeC---------------------------------------------CCeEEEEECc
Q psy3053 839 -------DAVLSLHFDNCTMLVGCW---------------------------------------------DSCVVIYDVE 866 (917)
Q Consensus 839 -------~~V~sis~dg~~Lasgs~---------------------------------------------DG~I~Iwdl~ 866 (917)
-.-.+++|+...++++.. +|.|..||+.
T Consensus 384 ~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~ 463 (689)
T 1yiq_A 384 AFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPV 463 (689)
T ss_dssp CTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETT
T ss_pred CcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECC
Confidence 001244566666666522 3789999999
Q ss_pred CCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecC-cceEEEEe
Q psy3053 867 CGRIVTELAGHEDAISCVAWDEKRKRLISGNLVGAPKLYATE-FYLLYVLT 916 (917)
Q Consensus 867 tg~~l~~l~~h~~~V~slafSpdg~~LaSgs~DG~V~IWdl~-~~ll~~Lt 916 (917)
+|+.+.....+. ++..-.++..+..+++|+.||.++.||.+ +..+..++
T Consensus 464 tG~~~W~~~~~~-~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~ 513 (689)
T 1yiq_A 464 KQQAAWEVPYVT-IFNGGTLSTAGNLVFEGSADGRVIAYAADTGEKLWEQP 513 (689)
T ss_dssp TTEEEEEEEESS-SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred CCCeEeEccCCC-CccCccceECCCEEEEECCCCcEEEEECCCCccceeee
Confidence 999998887554 33334566678899999999999999987 56777765
No 231
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=99.03 E-value=1.1e-06 Score=108.72 Aligned_cols=319 Identities=12% Similarity=0.120 Sum_probs=205.0
Q ss_pred eEEEEEeCCCcEEEEEecCCceEEEeccCCceeeee-eccccceEEEEEeCCCCEEEEEecccEEEEEEeccCeeeEEec
Q psy3053 583 ITAVAICGEGISVASVGRDAMLKIHSLKTGRQERSA-VLSSMTLSSLCILPDNCTMLVGCWDSCVVIYDVECGRIVTELA 661 (917)
Q Consensus 583 Vtsv~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~~-~~~~~~V~sl~~spd~~~Lasgs~Dg~I~Iwdl~tg~~i~~l~ 661 (917)
|.++...++|.+.+ ++.++-|..|+..+++..... ......|.++...+++. +.+|+.++.+..||..+++......
T Consensus 175 i~~i~~d~~g~lwi-gt~~~Gl~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~-lwigt~~~Gl~~~~~~~~~~~~~~~ 252 (795)
T 4a2l_A 175 IASTLYRQGDQIYI-GTSTDGLYTYSITQKTFEKVIPILGTKQIQAILQQSPTR-IWVATEGAGLFLINPKTKEIKNYLH 252 (795)
T ss_dssp CEEEEEEETTEEEE-EESSSCEEEEETTTCCEEECC----CCCEEEEEEEETTE-EEEEEBSSCEEEEETTTTEEEEECC
T ss_pred eEEEEECCCCCEEE-EECCCCEEEEeCCCCeEEEecCCCCCCeeEEEEEcCCCC-EEEEECCCCeEEEeCCCCeEEEeec
Confidence 88898888886554 555555888888776543321 12345678887777765 4455555558899988776543322
Q ss_pred c-------CCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEEEECC
Q psy3053 662 G-------HEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEA 734 (917)
Q Consensus 662 ~-------H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~d 734 (917)
. ....|.++...++|... .|+.+ -|.+||..+..-............-....|.++...++|. +.+|+.+
T Consensus 253 ~~~~~~~l~~~~i~~i~~d~~g~lW-igt~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~-lWigt~~ 329 (795)
T 4a2l_A 253 SPSNPKSISSNYIRSLAMDSQNRLW-IGTFN-DLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGG-MWLGTYF 329 (795)
T ss_dssp CTTCTTSCSCSBEEEEEECTTSCEE-EEESS-CEEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTSC-EEEEESS
T ss_pred CCCCccccCCCeEEEEEEcCCCCEE-EEeCC-hhheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcC-EEEEECC
Confidence 1 23569999998877654 45555 5888987654100000000000011235799999998887 5567777
Q ss_pred CeEEEEECCCCeeeEEec-----CCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeEEEEee---------cCCce
Q psy3053 735 GELIIWSLENHLMTQQLS-----DDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCNKV---------FEEKL 800 (917)
Q Consensus 735 G~I~iwDl~~~~~~~~l~-----~~h~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~tg~~i~~~~---------~~~~i 800 (917)
+-|..++..++....... ......|.++...++|. |..|+.++-|..||..++....... ....|
T Consensus 330 ~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~~g~-lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v 408 (795)
T 4a2l_A 330 GGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVEDKDKN-LWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNI 408 (795)
T ss_dssp SCEEEECGGGGSSEEECCCTTSSSCSCSSEEEEEECTTSC-EEEEESSSCEEEECTTTCCEEEECCC------CCSCSCE
T ss_pred CCeEEeCCCcccceEEcCCCCCCCCCCCeeEEEEECCCCC-EEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccE
Confidence 779999876654332211 01245689999888875 5567777779999988775443221 13568
Q ss_pred EEEEEeCCCE-EEEEeCCCeEEEEECCCCEEEEEEe----cCCCceEEEee--cCCEEEEEeCCCeEEEEECcCCeEEEE
Q psy3053 801 LCLSWAGEEK-VILGGALGMVYLVDLIQVQLLKQVR----AHKDAVLSLHF--DNCTMLVGCWDSCVVIYDVECGRIVTE 873 (917)
Q Consensus 801 ~~l~~s~~~~-lv~gs~dG~I~vwdl~~~~~i~~l~----~h~~~V~sis~--dg~~Lasgs~DG~I~Iwdl~tg~~l~~ 873 (917)
.++..++++. +.+|+.++.|..+|..+++...-.. .....|.++.. +|. |..|+.+ .+.+||..+++....
T Consensus 409 ~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~-lwigt~~-Gl~~~~~~~~~~~~~ 486 (795)
T 4a2l_A 409 KAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGN-LWLGTLS-ALVRFNPEQRSFTTI 486 (795)
T ss_dssp EEEEEETTTTEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSC-EEEEESS-CEEEEETTTTEEEEC
T ss_pred EEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCC-EEEEecC-ceeEEeCCCCeEEEc
Confidence 8999988888 9999998889999998876443221 13457888855 455 4455554 488999888765443
Q ss_pred ecC------CCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcce
Q psy3053 874 LAG------HEDAISCVAWDEKRKRLISGNLVGAPKLYATEFYL 911 (917)
Q Consensus 874 l~~------h~~~V~slafSpdg~~LaSgs~DG~V~IWdl~~~l 911 (917)
... ....|.++...++|...+.+. +.|..|+.++..
T Consensus 487 ~~~~~~~~~~~~~i~~i~~d~~g~lWigt~--~Gl~~~~~~~~~ 528 (795)
T 4a2l_A 487 EKEKDGTPVVSKQITTLFRDSHKRLWIGGE--EGLSVFKQEGLD 528 (795)
T ss_dssp CBCTTCCBCCCCCEEEEEECTTCCEEEEES--SCEEEEEEETTE
T ss_pred cccccccccCCceEEEEEECCCCCEEEEeC--CceEEEeCCCCe
Confidence 211 236799999999988766554 458888876543
No 232
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.01 E-value=1e-08 Score=114.62 Aligned_cols=249 Identities=7% Similarity=-0.019 Sum_probs=166.7
Q ss_pred EEEEEEeccCeeeEEeccCCCceeEEEecCCCCEEEEEE----------CCCeEEEEeCCCCCCCccCCcceeee-cc--
Q psy3053 645 CVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGS----------WDCTVRVWNTGASWSHMKPSKSLVSQ-LD-- 711 (917)
Q Consensus 645 ~I~Iwdl~tg~~i~~l~~H~~~Vt~l~~spd~~~L~Sgs----------~DgtI~vWdl~~~~~~~~~~~~~~~~-~~-- 711 (917)
+|.++|..+++.+.++.....+ .++++||++.++++. .+++|.+||..+.. ..... .+
T Consensus 47 ~vsvID~~t~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~-------vv~~I~v~~~ 117 (368)
T 1mda_H 47 ENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFL-------PIADIELPDA 117 (368)
T ss_dssp EEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCC-------EEEEEEETTS
T ss_pred eEEEEECCCCeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCC-------EEEEEECCCc
Confidence 8899999999999998765566 799999999998886 37899999998862 11111 11
Q ss_pred ----CCCceEEEEEeCCCCEEEEEEC--CCeEEE--EECCCCeeeEEecCCCCCCeEEEEEecCCC-EEEEEeCCCeEEE
Q psy3053 712 ----LDNRIKCLAISKDNNQLAVGTE--AGELII--WSLENHLMTQQLSDDINASVNGVLFSEDGC-RVLSCGNNCMLNV 782 (917)
Q Consensus 712 ----h~~~V~~l~~spdg~~Lasgs~--dG~I~i--wDl~~~~~~~~l~~~h~~~V~~v~fspdg~-~L~s~s~Dg~I~i 782 (917)
.......++++|||++++++.. +..+.+ +|+.+ +..+..+ +. ..+.|+|+ .+++.+.||.+.+
T Consensus 118 ~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~--~~---~~~~p~g~~~~~~~~~dg~~~~ 189 (368)
T 1mda_H 118 PRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSA--SC---FHIHPGAAATHYLGSCPASLAA 189 (368)
T ss_dssp CSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECS--SC---CCCEEEETTEEECCCCTTSCEE
T ss_pred cccccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEECC--Cc---eEEccCCCeEEEEEcCCCCEEE
Confidence 0134568999999999998875 457888 88877 4444311 11 12334443 4455667888888
Q ss_pred EECCC-----CeEEEE----eecCCceEEEEEeCCCEEEEEeCCCeEEEEECCCC--EEEEEEe------------cCCC
Q psy3053 783 YDLTT-----GMQVCN----KVFEEKLLCLSWAGEEKVILGGALGMVYLVDLIQV--QLLKQVR------------AHKD 839 (917)
Q Consensus 783 wDl~t-----g~~i~~----~~~~~~i~~l~~s~~~~lv~gs~dG~I~vwdl~~~--~~i~~l~------------~h~~ 839 (917)
.|+.+ ++.... ........ .....+.++..+. +.+.+.|.... +.+..+. ....
T Consensus 190 vd~~~~~~~~~~v~~~~t~~i~vg~~P~--~~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~ 266 (368)
T 1mda_H 190 SDLAAAPAAAGIVGAQCTGAQNCSSQAA--QANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGF 266 (368)
T ss_dssp EECCSSCCCCEECCCCSCTTSCBCSCCE--EETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSS
T ss_pred EECccccccCCeEEEEeeeeeeCCCCcc--ccccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcc
Confidence 88876 332211 11111112 2444456666666 99999998653 3333321 1112
Q ss_pred ceEEEeecCCEEEEEeC---------CCeEEEEECcCCeEEEEecCCCCCEEEEEEcCCCC-EEEEEe-CCCcEEEEecC
Q psy3053 840 AVLSLHFDNCTMLVGCW---------DSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRK-RLISGN-LVGAPKLYATE 908 (917)
Q Consensus 840 ~V~sis~dg~~Lasgs~---------DG~I~Iwdl~tg~~l~~l~~h~~~V~slafSpdg~-~LaSgs-~DG~V~IWdl~ 908 (917)
....++++++.++++.. ++.+.++|+.+++.+..+.... ...+++|+|||+ .+++.. .++.|.++|+.
T Consensus 267 ~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~-~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~ 345 (368)
T 1mda_H 267 QMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGH-DSDAIIAAQDGASDNYANSAGTEVLDIYDAA 345 (368)
T ss_dssp SCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEE-EECEEEECCSSSCEEEEEETTTTEEEEEESS
T ss_pred eeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCC-CcceEEECCCCCEEEEEccCCCCeEEEEECC
Confidence 22567899998877643 2356799999999998886443 578999999998 556666 59999999998
Q ss_pred cc-eEEE
Q psy3053 909 FY-LLYV 914 (917)
Q Consensus 909 ~~-ll~~ 914 (917)
+. .+..
T Consensus 346 t~kvv~~ 352 (368)
T 1mda_H 346 SDQDQSS 352 (368)
T ss_dssp SCEEEEE
T ss_pred CCcEEEE
Confidence 65 4443
No 233
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=99.01 E-value=2.3e-07 Score=112.33 Aligned_cols=302 Identities=11% Similarity=0.088 Sum_probs=192.4
Q ss_pred CcEEEEEecCCceEEEeccCCceeeeeeccccc----------e-EEEEEeCCCCEEEEEecccEEEEEEeccCeeeEEe
Q psy3053 592 GISVASVGRDAMLKIHSLKTGRQERSAVLSSMT----------L-SSLCILPDNCTMLVGCWDSCVVIYDVECGRIVTEL 660 (917)
Q Consensus 592 g~~Lasgs~Dg~I~IWd~~t~~~~~~~~~~~~~----------V-~sl~~spd~~~Lasgs~Dg~I~Iwdl~tg~~i~~l 660 (917)
+..++.++.++.|..+|..+|+.+.+....... + ..+++ ++..+++++.|+.|..+|..+|+.+...
T Consensus 66 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~~~W~~ 143 (668)
T 1kv9_A 66 DGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVAL--WGDKVYVGTLDGRLIALDAKTGKAIWSQ 143 (668)
T ss_dssp TTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--EBTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred CCEEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEE--ECCEEEEEcCCCEEEEEECCCCCEeeee
Confidence 456777888999999999999988776543211 0 11222 3567888899999999999999998877
Q ss_pred ccCC----CceeE-EEecCCCCEEEEEEC------CCeEEEEeCCCCCCCccCCc----ceee---------e-------
Q psy3053 661 AGHE----DAISC-VAWDEKRKRLISGSW------DCTVRVWNTGASWSHMKPSK----SLVS---------Q------- 709 (917)
Q Consensus 661 ~~H~----~~Vt~-l~~spd~~~L~Sgs~------DgtI~vWdl~~~~~~~~~~~----~~~~---------~------- 709 (917)
.... ..+.+ .... + ..++.++. +|.|..+|..++........ .... .
T Consensus 144 ~~~~~~~~~~~~~~P~v~-~-~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~ 221 (668)
T 1kv9_A 144 QTTDPAKPYSITGAPRVV-K-GKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQ 221 (668)
T ss_dssp ECSCTTSSCBCCSCCEEE-T-TEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSC
T ss_pred ccCCCCCcceecCCCEEE-C-CEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCccc
Confidence 6421 11111 1111 3 35555443 58999999988742211000 0000 0
Q ss_pred ----ccCCCceEEEEEeCCCCEEEEEECCCe-------------------EEEEECCCCeeeEEecCC-CC-------CC
Q psy3053 710 ----LDLDNRIKCLAISKDNNQLAVGTEAGE-------------------LIIWSLENHLMTQQLSDD-IN-------AS 758 (917)
Q Consensus 710 ----~~h~~~V~~l~~spdg~~Lasgs~dG~-------------------I~iwDl~~~~~~~~l~~~-h~-------~~ 758 (917)
.........+++++++..++.++.++. |..+|..+|+.+..+... |. .+
T Consensus 222 ~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~ 301 (668)
T 1kv9_A 222 YWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQ 301 (668)
T ss_dssp HHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSC
T ss_pred eeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCC
Confidence 011112235788898889988887763 999999999998887633 21 23
Q ss_pred eEEEEEecCCC---EEEEEeCCCeEEEEECCCCeEEEEeecCC-------------ce----------------------
Q psy3053 759 VNGVLFSEDGC---RVLSCGNNCMLNVYDLTTGMQVCNKVFEE-------------KL---------------------- 800 (917)
Q Consensus 759 V~~v~fspdg~---~L~s~s~Dg~I~iwDl~tg~~i~~~~~~~-------------~i---------------------- 800 (917)
.....+..+|+ .++.++.+|.++++|..+|+.+....... ++
T Consensus 302 ~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~ 381 (668)
T 1kv9_A 302 ITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAH 381 (668)
T ss_dssp EEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSS
T ss_pred cEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEeccccccccccccccccccCCccccccccccCCeeEECCCCcccc
Confidence 33333344675 68889999999999999999885433221 00
Q ss_pred --EEEEEeCCC-EEEEE------------------------------------eCCCeEEEEECCCCEEEEEEecCCCce
Q psy3053 801 --LCLSWAGEE-KVILG------------------------------------GALGMVYLVDLIQVQLLKQVRAHKDAV 841 (917)
Q Consensus 801 --~~l~~s~~~-~lv~g------------------------------------s~dG~I~vwdl~~~~~i~~l~~h~~~V 841 (917)
..++++++. .+++. ..+|.|..||+.+++.+.+...+....
T Consensus 382 ~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~~~~~~ 461 (668)
T 1kv9_A 382 NWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYPTHWN 461 (668)
T ss_dssp CSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEESSSCC
T ss_pred CCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCCCcEEEEccCCCCCc
Confidence 014455432 32221 123889999999999988776543322
Q ss_pred -EEEeecCCEEEEEeCCCeEEEEECcCCeEEEEecCCCCCE-EEEEEcCCCC-EEEEEe
Q psy3053 842 -LSLHFDNCTMLVGCWDSCVVIYDVECGRIVTELAGHEDAI-SCVAWDEKRK-RLISGN 897 (917)
Q Consensus 842 -~sis~dg~~Lasgs~DG~I~Iwdl~tg~~l~~l~~h~~~V-~slafSpdg~-~LaSgs 897 (917)
..+...+..+++|+.||.++.||.++|+.+..+....+.. .-+.+..+|+ +++.++
T Consensus 462 ~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l~~~~~~~~~~~~p~~~~~~G~~yva~~~ 520 (668)
T 1kv9_A 462 GGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFELAGRQYVAIMA 520 (668)
T ss_dssp CCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEE
T ss_pred CceeEeCCCEEEEECCcccchhhhhhcChhheEecCCCCcccCceEEEECCEEEEEEEe
Confidence 2446688899999999999999999999998886543211 2233445666 444443
No 234
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=99.01 E-value=1.4e-10 Score=130.30 Aligned_cols=258 Identities=10% Similarity=0.010 Sum_probs=148.3
Q ss_pred CCcEEEEEecCCceEEEeccCCceeeeeeccccceEEEEEeCCCCEEEEEecccEEEEEEeccCeeeEEeccCCCc-ee-
Q psy3053 591 EGISVASVGRDAMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTMLVGCWDSCVVIYDVECGRIVTELAGHEDA-IS- 668 (917)
Q Consensus 591 dg~~Lasgs~Dg~I~IWd~~t~~~~~~~~~~~~~V~sl~~spd~~~Lasgs~Dg~I~Iwdl~tg~~i~~l~~H~~~-Vt- 668 (917)
++..+++++.||.|..||..+|+.+..... ..+.+..+..++..+++++.||.|+.||..+|+.+..+..+... +.
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~ 85 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQA 85 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHTT
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCcccccc
Confidence 567899999999999999999999888776 45555556677878888899999999999999887766543211 11
Q ss_pred EEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEEEECCCeEEEEECCCCeee
Q psy3053 669 CVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGELIIWSLENHLMT 748 (917)
Q Consensus 669 ~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~dG~I~iwDl~~~~~~ 748 (917)
+.... .+..+++|+.|+.|..||..++..... ..... ...++|++..+++++.+|.|..||.++++.+
T Consensus 86 sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~--------~~~~~---~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~ 153 (369)
T 2hz6_A 86 SPCRS-SDGILYMGKKQDIWYVIDLLTGEKQQT--------LSSAF---ADSLSPSTSLLYLGRTEYTITMYDTKTRELR 153 (369)
T ss_dssp CSCC------CCCCEEEEEEEEECCC---------------------------------EEEEEEEEEEECCCSSSSSCC
T ss_pred CceEe-cCCEEEEEeCCCEEEEEECCCCcEEEE--------ecCCC---cccccccCCEEEEEecCCEEEEEECCCCCEE
Confidence 11111 345788888999999999988732211 11111 2344568889999999999999999999876
Q ss_pred EEecCCCCCCeEEEEEecCC---CEEEEEeCCCeEEEEECCCCeEEEEeecCCceEE-EEEeCCCEEEEE---eCCCeEE
Q psy3053 749 QQLSDDINASVNGVLFSEDG---CRVLSCGNNCMLNVYDLTTGMQVCNKVFEEKLLC-LSWAGEEKVILG---GALGMVY 821 (917)
Q Consensus 749 ~~l~~~h~~~V~~v~fspdg---~~L~s~s~Dg~I~iwDl~tg~~i~~~~~~~~i~~-l~~s~~~~lv~g---s~dG~I~ 821 (917)
..+... .....+++++. ..+++++.||.+..||..+|+.+.......++.. ..+++++.+.+. ..++.++
T Consensus 154 W~~~~~---~~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~pv~~~~~~~~dg~~~v~~~~~~~~~l~ 230 (369)
T 2hz6_A 154 WNATYF---DYAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQNYASPVVAFYVWQREGLRKVMHINVAVETLR 230 (369)
T ss_dssp CEEEEE---EECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEECSSCEEEEEECTTSSCEEECCEEEEHHHHH
T ss_pred EeEecc---cccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEecCCCceEEEEEecCCceEeccceeeccccee
Confidence 665411 11222233332 5677888999999999999999888777766554 333444433210 1133455
Q ss_pred EEECCCCE----EEEEEecCCCceEEEeecCCEEEEEeCCCeEEEEECc
Q psy3053 822 LVDLIQVQ----LLKQVRAHKDAVLSLHFDNCTMLVGCWDSCVVIYDVE 866 (917)
Q Consensus 822 vwdl~~~~----~i~~l~~h~~~V~sis~dg~~Lasgs~DG~I~Iwdl~ 866 (917)
.+|..+|+ .+...... ..+.+....+..++.++.||.++.++..
T Consensus 231 ~ld~~tG~~~~~~~W~~~~~-~~~~sp~~~~g~lyv~~~~G~l~al~~~ 278 (369)
T 2hz6_A 231 YLTFMSGEVGRITKWKYPFP-KETEAKSKLTPTLYVGKYSTSLYASPSM 278 (369)
T ss_dssp HHHHHHHHHHHHHTSCCCCC-CHHHHHHHSEEEECBEECSSCEECCEEE
T ss_pred eeehhcCCcccceeeeeccC-ccccccccccceEEEecccCCEEecCcc
Confidence 55554444 22222111 1111111134567888888988888765
No 235
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.00 E-value=6.6e-08 Score=107.07 Aligned_cols=233 Identities=7% Similarity=-0.013 Sum_probs=149.3
Q ss_pred cceEEEEEeCCCcEEEEEec--CCceEEEeccCCceeeee-------eccccceEEEEEeCCCCEEEEEec-----ccEE
Q psy3053 581 EAITAVAICGEGISVASVGR--DAMLKIHSLKTGRQERSA-------VLSSMTLSSLCILPDNCTMLVGCW-----DSCV 646 (917)
Q Consensus 581 ~~Vtsv~fSpdg~~Lasgs~--Dg~I~IWd~~t~~~~~~~-------~~~~~~V~sl~~spd~~~Lasgs~-----Dg~I 646 (917)
.....++++++|+.+++... ++.++||.+.+++.. .+ ..+-..+..+++++++++.++... ++.|
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~~-~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i 95 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGLI-PFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKL 95 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEEE-ESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCEE
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCee-cCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCeE
Confidence 67899999999998888642 344667766555432 11 123356889999999887666544 5789
Q ss_pred EEEEeccCeeeEEecc------CCCceeEEEecCCCCEE-EEEE---CCCeEEEEeCCCCCCCccC----C--c--ceee
Q psy3053 647 VIYDVECGRIVTELAG------HEDAISCVAWDEKRKRL-ISGS---WDCTVRVWNTGASWSHMKP----S--K--SLVS 708 (917)
Q Consensus 647 ~Iwdl~tg~~i~~l~~------H~~~Vt~l~~spd~~~L-~Sgs---~DgtI~vWdl~~~~~~~~~----~--~--~~~~ 708 (917)
.+||+.+++.+..+.. +...+..+++++++..+ ++.+ .++.|.+||..++...... . . ....
T Consensus 96 ~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~ 175 (343)
T 2qe8_A 96 VAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDLV 175 (343)
T ss_dssp EEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCCCE
T ss_pred EEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCccccccccee
Confidence 9999999987766643 22356899999865444 5554 6789999998765310000 0 0 0000
Q ss_pred ecc--------------CCCceEEEEEeCCCCEEEEEECCC-eEEEEECC---CCe-----e---eEEecCCCCCCeEEE
Q psy3053 709 QLD--------------LDNRIKCLAISKDNNQLAVGTEAG-ELIIWSLE---NHL-----M---TQQLSDDINASVNGV 762 (917)
Q Consensus 709 ~~~--------------h~~~V~~l~~spdg~~Lasgs~dG-~I~iwDl~---~~~-----~---~~~l~~~h~~~V~~v 762 (917)
..+ ....+..++++|+|+.|.++..++ .+..++.. .+. . +... ++.+....+
T Consensus 176 ~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--g~~g~pdgi 253 (343)
T 2qe8_A 176 IDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERY--SEKPICDGI 253 (343)
T ss_dssp ETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEE--EECCSCSCE
T ss_pred ECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEec--ccCCCCceE
Confidence 000 113468899999999888887765 55555432 110 0 0111 123356679
Q ss_pred EEecCCCEEEEEeCCCeEEEEECCCCeEEEEeec--CCceEEEEEeCCCEEEEEeC
Q psy3053 763 LFSEDGCRVLSCGNNCMLNVYDLTTGMQVCNKVF--EEKLLCLSWAGEEKVILGGA 816 (917)
Q Consensus 763 ~fspdg~~L~s~s~Dg~I~iwDl~tg~~i~~~~~--~~~i~~l~~s~~~~lv~gs~ 816 (917)
+++++|..+++...++.|.+||..+++....... ...+.++++++++.+++.+.
T Consensus 254 a~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~~~g~l~v~~~ 309 (343)
T 2qe8_A 254 SIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDEKLSWTDSFNFGSDGYLYFDCN 309 (343)
T ss_dssp EECTTCCEEEEEGGGTEEEEEETTTTEEEEEEECGGGSCEEEEEECTTSCEEEEEC
T ss_pred EECCCCCEEEEccCCCeEEEEECCCCCEEEEEECCceecCCeeEECCCCcEEEEeC
Confidence 9999999998888899999999856754333322 23477888887766554443
No 236
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=98.95 E-value=1.1e-07 Score=105.43 Aligned_cols=259 Identities=10% Similarity=0.045 Sum_probs=164.5
Q ss_pred cceEEEEEeCCCCEEEEEec--ccEEEEEEeccCeeeEEe-------ccCCCceeEEEecCCCCEEEEEEC-----CCeE
Q psy3053 623 MTLSSLCILPDNCTMLVGCW--DSCVVIYDVECGRIVTEL-------AGHEDAISCVAWDEKRKRLISGSW-----DCTV 688 (917)
Q Consensus 623 ~~V~sl~~spd~~~Lasgs~--Dg~I~Iwdl~tg~~i~~l-------~~H~~~Vt~l~~spd~~~L~Sgs~-----DgtI 688 (917)
.....++++++|+.+++... ++.++||.+.+++.. .+ .+|-..+.+++++++++.+++-+. ++.|
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~~-~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i 95 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGLI-PFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKL 95 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEEE-ESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCEE
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCee-cCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCeE
Confidence 46788999999998888642 343666666666543 22 235568999999999876665443 5789
Q ss_pred EEEeCCCCCCCccCCcceeee----ccCCCceEEEEEeCCCCEE-EEEE---CCCeEEEEECCCCeeeEEecCCCCCCe-
Q psy3053 689 RVWNTGASWSHMKPSKSLVSQ----LDLDNRIKCLAISKDNNQL-AVGT---EAGELIIWSLENHLMTQQLSDDINASV- 759 (917)
Q Consensus 689 ~vWdl~~~~~~~~~~~~~~~~----~~h~~~V~~l~~spdg~~L-asgs---~dG~I~iwDl~~~~~~~~l~~~h~~~V- 759 (917)
.+||+.++... ..... ..+...+..+++++++..+ ++.. .++.|.+||+.+++..+.+. .|....
T Consensus 96 ~~~d~~tg~~~-----~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~-~~~~~~~ 169 (343)
T 2qe8_A 96 VAWDTLNNQLS-----RVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQ-GYPGIAP 169 (343)
T ss_dssp EEEETTTTEEE-----EEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECT-TCTTTSC
T ss_pred EEEECCCCeEE-----EEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEec-CCCcccc
Confidence 99998776200 00000 1223456899999865555 4444 57899999999888776654 321111
Q ss_pred EEEEEecCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCceEEEEEeCCC-EEEEEeCCC-eEEEEECC---CCE-----
Q psy3053 760 NGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCNKVFEEKLLCLSWAGEE-KVILGGALG-MVYLVDLI---QVQ----- 829 (917)
Q Consensus 760 ~~v~fspdg~~L~s~s~Dg~I~iwDl~tg~~i~~~~~~~~i~~l~~s~~~-~lv~gs~dG-~I~vwdl~---~~~----- 829 (917)
....+.++|..+.+.+.++.+..|. ..+..+++++++ .++++...+ .+..++.. .+.
T Consensus 170 ~~~~~~~~g~~~~~~~~~g~~~~~~-------------~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~ 236 (343)
T 2qe8_A 170 EDIDLVIDGVPVQIGQPDGTVIRPH-------------LGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAE 236 (343)
T ss_dssp CSCCCEETTEECBEECTTSCEECCC-------------CCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHH
T ss_pred cccceeECCEEEEeccCCCceecee-------------cccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhh
Confidence 0144566777777777788776653 135678899887 455655554 66666532 110
Q ss_pred ---EEEEEecCCCc--eEEEeecCCEEEEEeCCCeEEEEECcCCeEEEEecC-CCCCEEEEEEcCCCCEEEEEeCCCcE
Q psy3053 830 ---LLKQVRAHKDA--VLSLHFDNCTMLVGCWDSCVVIYDVECGRIVTELAG-HEDAISCVAWDEKRKRLISGNLVGAP 902 (917)
Q Consensus 830 ---~i~~l~~h~~~--V~sis~dg~~Lasgs~DG~I~Iwdl~tg~~l~~l~~-h~~~V~slafSpdg~~LaSgs~DG~V 902 (917)
.+.. .++.+. -.+++++|.+.++...++.|.+||..+++....... +.....+++++++|.++++.+..+.+
T Consensus 237 ~~~~~~~-~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~~~g~l~v~~~~~~~~ 314 (343)
T 2qe8_A 237 LGSKIER-YSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDEKLSWTDSFNFGSDGYLYFDCNQLHHS 314 (343)
T ss_dssp HHTTCEE-EEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEECGGGSCEEEEEECTTSCEEEEECCGGGS
T ss_pred hhcceEe-cccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEECCceecCCeeEECCCCcEEEEeCccccc
Confidence 0011 112122 245577899888888899999999866765433332 24568999999999988887755444
No 237
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=98.95 E-value=2.8e-08 Score=111.13 Aligned_cols=232 Identities=6% Similarity=-0.071 Sum_probs=153.5
Q ss_pred ceEEEeccCCceeeeeeccccceEEEEEeCCCCEEEEEe----------cccEEEEEEeccCeeeEEeccC-------CC
Q psy3053 603 MLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTMLVGC----------WDSCVVIYDVECGRIVTELAGH-------ED 665 (917)
Q Consensus 603 ~I~IWd~~t~~~~~~~~~~~~~V~sl~~spd~~~Lasgs----------~Dg~I~Iwdl~tg~~i~~l~~H-------~~ 665 (917)
+|.+.|..+++.+.++.....+ .++++||++.+.++. .++.|.+||..+++.+.++..+ ..
T Consensus 47 ~vsvID~~t~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~ 124 (368)
T 1mda_H 47 ENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGP 124 (368)
T ss_dssp EEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSC
T ss_pred eEEEEECCCCeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCC
Confidence 7889999999999998877777 799999999998886 3789999999999999888643 12
Q ss_pred ceeEEEecCCCCEEEEEEC--CCeEEE--EeCCCCCCCccCCcc---------eeeeccCCCceEEEE------------
Q psy3053 666 AISCVAWDEKRKRLISGSW--DCTVRV--WNTGASWSHMKPSKS---------LVSQLDLDNRIKCLA------------ 720 (917)
Q Consensus 666 ~Vt~l~~spd~~~L~Sgs~--DgtI~v--Wdl~~~~~~~~~~~~---------~~~~~~h~~~V~~l~------------ 720 (917)
....++++|||++++++.. +..|.+ +|..+ ........+ .......++.+..+.
T Consensus 125 ~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t-v~~i~v~~~~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~ 203 (368)
T 1mda_H 125 RVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD-DQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVG 203 (368)
T ss_dssp CTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE-EEEEECSSCCCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECC
T ss_pred CcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh-ceEEECCCceEEccCCCeEEEEEcCCCCEEEEECccccccCCeEE
Confidence 4568999999999998875 467888 88754 100000000 000000000111111
Q ss_pred --------------EeCCCCEEEEEECCCeEEEEECCCCe--eeEEecCC---------CCCCeEEEEEecCCCEEEEEe
Q psy3053 721 --------------ISKDNNQLAVGTEAGELIIWSLENHL--MTQQLSDD---------INASVNGVLFSEDGCRVLSCG 775 (917)
Q Consensus 721 --------------~spdg~~Lasgs~dG~I~iwDl~~~~--~~~~l~~~---------h~~~V~~v~fspdg~~L~s~s 775 (917)
.++++..++..+. +.+.+.|+.+.. .+..+... .......++++|+++.++++.
T Consensus 204 ~~~t~~i~vg~~P~~~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~ 282 (368)
T 1mda_H 204 AQCTGAQNCSSQAAQANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILT 282 (368)
T ss_dssp CCSCTTSCBCSCCEEETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEE
T ss_pred EEeeeeeeCCCCccccccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEe
Confidence 1444454555555 778888876432 22222100 011122267999988888654
Q ss_pred C---------CCeEEEEECCCCeEEEEeecCCceEEEEEeCCCE--EEEEe-CCCeEEEEECCCCEEEEEEecCC
Q psy3053 776 N---------NCMLNVYDLTTGMQVCNKVFEEKLLCLSWAGEEK--VILGG-ALGMVYLVDLIQVQLLKQVRAHK 838 (917)
Q Consensus 776 ~---------Dg~I~iwDl~tg~~i~~~~~~~~i~~l~~s~~~~--lv~gs-~dG~I~vwdl~~~~~i~~l~~h~ 838 (917)
. ++.+.++|+.+++.+..+........+++++++. +++.. .++.|.++|+.+++.+.++....
T Consensus 283 ~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv~~I~vg~ 357 (368)
T 1mda_H 283 VEHSRSCLAAAENTSSVTASVGQTSGPISNGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVELDK 357 (368)
T ss_dssp EECSSCTTSCEEEEEEEESSSCCEEECCEEEEEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCCCS
T ss_pred ccccCcccccCCCEEEEECCCCeEEEEEECCCCcceEEECCCCCEEEEEccCCCCeEEEEECCCCcEEEEEECCC
Confidence 3 2356699999998888887777788888888764 44555 48899999999999888886443
No 238
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.93 E-value=6.5e-07 Score=106.51 Aligned_cols=300 Identities=13% Similarity=0.072 Sum_probs=185.5
Q ss_pred CcEEEEEec-CCceEEEec-cCCceeeeeeccccc-----------eEEEEEeCCCCE----EEEEecccEEEEEEeccC
Q psy3053 592 GISVASVGR-DAMLKIHSL-KTGRQERSAVLSSMT-----------LSSLCILPDNCT----MLVGCWDSCVVIYDVECG 654 (917)
Q Consensus 592 g~~Lasgs~-Dg~I~IWd~-~t~~~~~~~~~~~~~-----------V~sl~~spd~~~----Lasgs~Dg~I~Iwdl~tg 654 (917)
+..|+.++. ++.|..+|. .+|+.+.+....... ...++++|.+.. |++++.|+.+..+|..+|
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG 141 (599)
T 1w6s_A 62 DGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETG 141 (599)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTC
T ss_pred CCEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEECCCC
Confidence 456777777 889999999 899988766543211 123455444444 888899999999999999
Q ss_pred eeeEEeccCC----CceeE-EEecCCCCEEEEEE------CCCeEEEEeCCCCCCCccCCcceeee--------------
Q psy3053 655 RIVTELAGHE----DAISC-VAWDEKRKRLISGS------WDCTVRVWNTGASWSHMKPSKSLVSQ-------------- 709 (917)
Q Consensus 655 ~~i~~l~~H~----~~Vt~-l~~spd~~~L~Sgs------~DgtI~vWdl~~~~~~~~~~~~~~~~-------------- 709 (917)
+.+....... ..+++ .... ++ .++.++ .+|.|..+|..++.............
T Consensus 142 ~~~W~~~~~~~~~~~~~~ssP~v~-~g-~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~ 219 (599)
T 1w6s_A 142 ETVWKVENSDIKVGSTLTIAPYVV-KD-KVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPH 219 (599)
T ss_dssp CEEEEEECCCGGGTCBCCSCCEEE-TT-EEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGG
T ss_pred CEEEeecCCCCCccceeecCCEEE-CC-EEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCCcccccccccccccccc
Confidence 9887654322 01221 1111 33 455554 38999999998874221100000000
Q ss_pred ---------------cc-CCCce-EEEEEeCCCCEEEEEECC----------------CeEEEEECCCCeeeEEecCCCC
Q psy3053 710 ---------------LD-LDNRI-KCLAISKDNNQLAVGTEA----------------GELIIWSLENHLMTQQLSDDIN 756 (917)
Q Consensus 710 ---------------~~-h~~~V-~~l~~spdg~~Lasgs~d----------------G~I~iwDl~~~~~~~~l~~~h~ 756 (917)
.. ....+ ..+++.++...+..++.+ +.|..+|.++|+.+..+...+.
T Consensus 220 ~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~ 299 (599)
T 1w6s_A 220 YGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPH 299 (599)
T ss_dssp GCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTT
T ss_pred ccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecCCC
Confidence 00 00011 245677788888887765 3899999999999888764322
Q ss_pred C--------CeEEEEEe-cCC---CEEEEEeCCCeEEEEECCCCeEEEEeecCC-------------c-e----------
Q psy3053 757 A--------SVNGVLFS-EDG---CRVLSCGNNCMLNVYDLTTGMQVCNKVFEE-------------K-L---------- 800 (917)
Q Consensus 757 ~--------~V~~v~fs-pdg---~~L~s~s~Dg~I~iwDl~tg~~i~~~~~~~-------------~-i---------- 800 (917)
. ...-+... .+| ..++.++.+|.++++|..+|+.+....... . +
T Consensus 300 d~wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~ 379 (599)
T 1w6s_A 300 DEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKSVDLKTGQPVRDPEYGTRMD 379 (599)
T ss_dssp CSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCCEEECGGGCCCTT
T ss_pred ccccccCCCccEEEeccccCCcEEEEEEEECCCcEEEEEECCCCCEeecccccCCcccccccccCCCceeeccccCCCCC
Confidence 1 11112222 467 467778899999999999999887654321 0 0
Q ss_pred ----------------EEEEEeCCC-EEEEE---------------------------------e------CCCeEEEEE
Q psy3053 801 ----------------LCLSWAGEE-KVILG---------------------------------G------ALGMVYLVD 824 (917)
Q Consensus 801 ----------------~~l~~s~~~-~lv~g---------------------------------s------~dG~I~vwd 824 (917)
..++++|+. .+++. + ..|.+..||
T Consensus 380 ~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~p~~~~~~~~~~G~l~A~D 459 (599)
T 1w6s_A 380 HLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPGPKGDRQNYEGLGQIKAYN 459 (599)
T ss_dssp CCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSBTTTTBCCEEEEEEC
T ss_pred CCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccccccCCcceecccceeccCCcCCcccCCCcCeEEEEE
Confidence 122333321 11110 1 358899999
Q ss_pred CCCCEEEEEEecCCCce-EEEeecCCEEEEEeCCCeEEEEECcCCeEEEEecCCCCCE-EEEEEcCCCCEE
Q psy3053 825 LIQVQLLKQVRAHKDAV-LSLHFDNCTMLVGCWDSCVVIYDVECGRIVTELAGHEDAI-SCVAWDEKRKRL 893 (917)
Q Consensus 825 l~~~~~i~~l~~h~~~V-~sis~dg~~Lasgs~DG~I~Iwdl~tg~~l~~l~~h~~~V-~slafSpdg~~L 893 (917)
+.+++.+-+........ ..+...+..++.|+.||.++.+|.++|+.+.+++...+.+ .-+.+..+|+..
T Consensus 460 ~~tG~~~W~~~~~~~~~~g~~~tagg~vf~gt~dg~l~A~D~~tG~~lW~~~l~~g~~~~P~~y~~~G~qy 530 (599)
T 1w6s_A 460 AITGDYKWEKMERFAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGAIGYPMTYTHKGTQY 530 (599)
T ss_dssp TTTCCEEEEEEESSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEE
T ss_pred CCCCCEEeEecCCCCccCcceEecCCEEEEECCCCeEEEEECCCCCEEEEeeCCCCcEeccEEEEeCCEEE
Confidence 99999887765321111 1234578888889999999999999999998886433221 224455677643
No 239
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.91 E-value=5.1e-07 Score=107.17 Aligned_cols=300 Identities=12% Similarity=0.037 Sum_probs=185.3
Q ss_pred CcEEEEEec-CCceEEEec-cCCceeeeeeccccc-e----------EEEEEeCCCCEEEEEecccEEEEEEeccCeeeE
Q psy3053 592 GISVASVGR-DAMLKIHSL-KTGRQERSAVLSSMT-L----------SSLCILPDNCTMLVGCWDSCVVIYDVECGRIVT 658 (917)
Q Consensus 592 g~~Lasgs~-Dg~I~IWd~-~t~~~~~~~~~~~~~-V----------~sl~~spd~~~Lasgs~Dg~I~Iwdl~tg~~i~ 658 (917)
+..++.++. ++.|..+|. .+|+.+.+....... + ..+++ ++..+++++.|+.+..+|..+|+.+.
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~~~W 139 (571)
T 2ad6_A 62 GDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAY--GAGQIVKKQANGHLLALDAKTGKINW 139 (571)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEE
T ss_pred CCEEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEE--ECCEEEEEeCCCEEEEEECCCCCEEE
Confidence 446677777 899999999 899988766543210 0 11222 35678888899999999999999887
Q ss_pred EeccCC----CceeE-EEecCCCCEEEEEEC------CCeEEEEeCCCCCCCccCCc--ceee-----------------
Q psy3053 659 ELAGHE----DAISC-VAWDEKRKRLISGSW------DCTVRVWNTGASWSHMKPSK--SLVS----------------- 708 (917)
Q Consensus 659 ~l~~H~----~~Vt~-l~~spd~~~L~Sgs~------DgtI~vWdl~~~~~~~~~~~--~~~~----------------- 708 (917)
...... ..+.+ .... + ..++.++. ++.|..+|..++........ ....
T Consensus 140 ~~~~~~~~~~~~~~~~P~v~-~-g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~~~G~~ 217 (571)
T 2ad6_A 140 EVEVCDPKVGSTLTQAPFVA-K-DTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQF 217 (571)
T ss_dssp EEECCCGGGTCBCCSCCEEE-T-TEEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCS
T ss_pred EecCCCCCccceeccCCEEE-C-CEEEEEecCCccCCCCEEEEEECCCCcEEEEEccCCCccccccCccccccccccccc
Confidence 654321 01211 1111 3 45555554 78999999988742211000 0000
Q ss_pred ------------eccCCCceEEEEEeCCCCEEEEEECC----------------CeEEEEECCCCeeeEEecCCC-C---
Q psy3053 709 ------------QLDLDNRIKCLAISKDNNQLAVGTEA----------------GELIIWSLENHLMTQQLSDDI-N--- 756 (917)
Q Consensus 709 ------------~~~h~~~V~~l~~spdg~~Lasgs~d----------------G~I~iwDl~~~~~~~~l~~~h-~--- 756 (917)
..+.......++++++...+..++.+ +.|..+|..+|+.+..+...+ .
T Consensus 218 ~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d 297 (571)
T 2ad6_A 218 GLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWD 297 (571)
T ss_dssp SHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSC
T ss_pred ccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCcccc
Confidence 00000011235677777777776642 369999999999988776322 1
Q ss_pred ----CCeEEEEEecCCC---EEEEEeCCCeEEEEECCCCeEEEEeecCCc--------------e---------------
Q psy3053 757 ----ASVNGVLFSEDGC---RVLSCGNNCMLNVYDLTTGMQVCNKVFEEK--------------L--------------- 800 (917)
Q Consensus 757 ----~~V~~v~fspdg~---~L~s~s~Dg~I~iwDl~tg~~i~~~~~~~~--------------i--------------- 800 (917)
....-+....+|+ .++.++.+|.++++|..+|+.+........ +
T Consensus 298 ~~~~~~p~l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~ 377 (571)
T 2ad6_A 298 FAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTN 377 (571)
T ss_dssp CCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEE
T ss_pred cccCCCCEEEecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCccccccccccCCceecccccCCCCCCCceE
Confidence 1111122334774 577888899999999999998876554321 1
Q ss_pred -----------EEEEEeCC-CEEEEEe-------------------------------------CCCeEEEEECCCCEEE
Q psy3053 801 -----------LCLSWAGE-EKVILGG-------------------------------------ALGMVYLVDLIQVQLL 831 (917)
Q Consensus 801 -----------~~l~~s~~-~~lv~gs-------------------------------------~dG~I~vwdl~~~~~i 831 (917)
..++++|+ +.+++.+ .+|.|..||+.+++.+
T Consensus 378 ~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~~ 457 (571)
T 2ad6_A 378 ICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAK 457 (571)
T ss_dssp ESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCEE
T ss_pred ECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCccccccceeccCccccCCCCCCeEEEEECCCCCEE
Confidence 12345543 3444432 3588999999999988
Q ss_pred EEEecCCCce-EEEeecCCEEEEEeCCCeEEEEECcCCeEEEEecCCCCC-EEEEEEcCCCCEEEE
Q psy3053 832 KQVRAHKDAV-LSLHFDNCTMLVGCWDSCVVIYDVECGRIVTELAGHEDA-ISCVAWDEKRKRLIS 895 (917)
Q Consensus 832 ~~l~~h~~~V-~sis~dg~~Lasgs~DG~I~Iwdl~tg~~l~~l~~h~~~-V~slafSpdg~~LaS 895 (917)
.+........ ..+...+..+++++.||.|+.+|.++|+.+.++...... -..+.+..+|+.++.
T Consensus 458 W~~~~~~~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~~~~~G~~yv~ 523 (571)
T 2ad6_A 458 WTKWEKFAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGSPMTYSFKGKQYIG 523 (571)
T ss_dssp EEEEESSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEE
T ss_pred EEecCCCCccceeEEECCCEEEEEcCCCeEEEEECCCCCEEEEEeCCCCcEeeeEEEEECCEEEEE
Confidence 7775432211 122445778888999999999999999999888643221 122335567765543
No 240
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=98.88 E-value=4.9e-10 Score=125.85 Aligned_cols=204 Identities=15% Similarity=0.049 Sum_probs=113.8
Q ss_pred CCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEEEECCCeEEEEECCCCeeeEEecCC
Q psy3053 675 KRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGELIIWSLENHLMTQQLSDD 754 (917)
Q Consensus 675 d~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~dG~I~iwDl~~~~~~~~l~~~ 754 (917)
++..+++++.||.|..||..++.. ...... ..+.+..+..++..+++++.||.|+.||..+++.+......
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~--------~W~~~~-~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~ 78 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSI--------KWTLKE-DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFT 78 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCE--------EEEEEC-CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCC
T ss_pred eCCEEEEEcCCCEEEEEECCCCCE--------EEEecC-CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeecc
Confidence 568899999999999999988731 111111 34444445567778888889999999999998877665421
Q ss_pred CCCCeE-EEEEecCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCceEEEEEeCCCEEEEEeCCCeEEEEECCCCEEEEE
Q psy3053 755 INASVN-GVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCNKVFEEKLLCLSWAGEEKVILGGALGMVYLVDLIQVQLLKQ 833 (917)
Q Consensus 755 h~~~V~-~v~fspdg~~L~s~s~Dg~I~iwDl~tg~~i~~~~~~~~i~~l~~s~~~~lv~gs~dG~I~vwdl~~~~~i~~ 833 (917)
....+. +..+. ++..+++++.++.++.||..+|+.+.......... .+. .++.+++++.+|.|+.||..+++.+..
T Consensus 79 ~~~~~~~sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~~~~-~~p-~~~~v~~~~~dg~v~a~d~~tG~~~W~ 155 (369)
T 2hz6_A 79 IPELVQASPCRS-SDGILYMGKKQDIWYVIDLLTGEKQQTLSSAFADS-LSP-STSLLYLGRTEYTITMYDTKTRELRWN 155 (369)
T ss_dssp HHHHHTTCSCC------CCCCEEEEEEEEECCC------------------------EEEEEEEEEEECCCSSSSSCCCE
T ss_pred CccccccCceEe-cCCEEEEEeCCCEEEEEECCCCcEEEEecCCCccc-ccc-cCCEEEEEecCCEEEEEECCCCCEEEe
Confidence 111110 00111 34567788889999999999998876655443221 111 345788899999999999999986655
Q ss_pred EecCCCceEEEeecC---CEEEEEeCCCeEEEEECcCCeEEEEecCCCCCE-EEEEEcCCCC
Q psy3053 834 VRAHKDAVLSLHFDN---CTMLVGCWDSCVVIYDVECGRIVTELAGHEDAI-SCVAWDEKRK 891 (917)
Q Consensus 834 l~~h~~~V~sis~dg---~~Lasgs~DG~I~Iwdl~tg~~l~~l~~h~~~V-~slafSpdg~ 891 (917)
+..+......++.+. ..+++++.||.|+.||..+|+.+..... ..++ ...+++++|.
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~-~~pv~~~~~~~~dg~ 216 (369)
T 2hz6_A 156 ATYFDYAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQNY-ASPVVAFYVWQREGL 216 (369)
T ss_dssp EEEEEECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEEC-SSCEEEEEECTTSSC
T ss_pred EecccccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEecC-CCceEEEEEecCCce
Confidence 432211111112221 5677889999999999999999887763 3444 3345566664
No 241
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.88 E-value=1.1e-05 Score=99.54 Aligned_cols=326 Identities=13% Similarity=0.103 Sum_probs=204.0
Q ss_pred cceEEEEEeCCCcEEEEEecCCceEEEeccCCceeeee-------eccccceEEEEEeCCCCEEEEEecccEEEEEEecc
Q psy3053 581 EAITAVAICGEGISVASVGRDAMLKIHSLKTGRQERSA-------VLSSMTLSSLCILPDNCTMLVGCWDSCVVIYDVEC 653 (917)
Q Consensus 581 ~~Vtsv~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~~-------~~~~~~V~sl~~spd~~~Lasgs~Dg~I~Iwdl~t 653 (917)
..|.++...++|.+.+ |+.++-|..|+..+++..... ......|.++...+++.+.+ |+.+ -+.+||..+
T Consensus 163 ~~i~~i~~d~~g~lwi-gt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lwi-gt~~-Gl~~~d~~~ 239 (781)
T 3v9f_A 163 EQTWTATEAEDGKLYI-GHVEGGLSILSLNDKSVKHFVHDPQNPNSLPGNDVRCIYKDTNGNIWI-GTSK-GLALFNANT 239 (781)
T ss_dssp CCEEEEEEEETTEEEE-EETTTEEEEEETTTTEEEEECC--------CCSSEEEEEECTTCCEEE-EETT-EEEEEETTT
T ss_pred cceEEEEECCCCCEEE-EecCCCeEEEcCCCCceEeeecCCCCcccCCCCceeEEEEcCCCCEEE-EeCC-cHheECCCC
Confidence 4688888888886554 555655888887766433211 11235688888877776544 4555 688999877
Q ss_pred CeeeEEecc-------CCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCC-------cceeeeccCCCceEEE
Q psy3053 654 GRIVTELAG-------HEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPS-------KSLVSQLDLDNRIKCL 719 (917)
Q Consensus 654 g~~i~~l~~-------H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~-------~~~~~~~~h~~~V~~l 719 (917)
++....... ....|.++...++|. |..|+..+-|.++|..+........ .......-....|.++
T Consensus 240 ~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i 318 (781)
T 3v9f_A 240 ETFTNFHNNPGNIHGALSSYIFSIKQLKDNK-LWIATELNGIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYI 318 (781)
T ss_dssp TEEEC-----------CCCCEEEEEECTTSE-EEEEESSSCEEEEETTCC---------CEEECBCSSTTSBSSSCEEEE
T ss_pred CcEEEEEcCCCccccccCceEEEEEECCCCC-EEEEeCCCCeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEE
Confidence 654432211 235689999887765 5566765678889876542110000 0000001134578999
Q ss_pred EEeCCCCEEEEEECCCeEEEEECCCCeeeEEec--------CCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeEE
Q psy3053 720 AISKDNNQLAVGTEAGELIIWSLENHLMTQQLS--------DDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQV 791 (917)
Q Consensus 720 ~~spdg~~Lasgs~dG~I~iwDl~~~~~~~~l~--------~~h~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~tg~~i 791 (917)
...++|. |.+|+.++-|..++..++....... ......|.+++..++|. |..|+.++-|..+|..++...
T Consensus 319 ~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~ 396 (781)
T 3v9f_A 319 FQDSFNN-IWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQGK-LWIGTDGGGINVFENGKRVAI 396 (781)
T ss_dssp EECSSCC-EEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECTTSC-EEEEEBSSCEEEEETTEEEEE
T ss_pred EEeCCCC-EEEEecCCeEEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcCCCC-EEEEeCCCcEEEEECCCCeEE
Confidence 9988876 6667777778899887654333211 11345689998888775 455665666889998655432
Q ss_pred EE----eecCCceEEEEEeCCCEEEEEeCCCeEEEEECCCCEEEEEEe--cCCCceEEEeec-CCEEEEEeCCCeEEEEE
Q psy3053 792 CN----KVFEEKLLCLSWAGEEKVILGGALGMVYLVDLIQVQLLKQVR--AHKDAVLSLHFD-NCTMLVGCWDSCVVIYD 864 (917)
Q Consensus 792 ~~----~~~~~~i~~l~~s~~~~lv~gs~dG~I~vwdl~~~~~i~~l~--~h~~~V~sis~d-g~~Lasgs~DG~I~Iwd 864 (917)
.. ......|.++..+.++.+.+|+.++.+..+|..+++...... .....|.++..+ ...|..|+. +.|..+|
T Consensus 397 ~~~~~~~~~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lwigt~-~Gl~~~~ 475 (781)
T 3v9f_A 397 YNKENRELLSNSVLCSLKDSEGNLWFGTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYEDKNKKIWIGTH-AGVFVID 475 (781)
T ss_dssp CC-----CCCSBEEEEEECTTSCEEEEETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEECTTSEEEEEET-TEEEEEE
T ss_pred EccCCCCCCCcceEEEEECCCCCEEEEeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECCCCCEEEEEC-CceEEEe
Confidence 21 112356889999888899999988889999988776433221 134678888654 345666666 5689999
Q ss_pred CcCCeEEEEecCC-----CCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcceEEE
Q psy3053 865 VECGRIVTELAGH-----EDAISCVAWDEKRKRLISGNLVGAPKLYATEFYLLYV 914 (917)
Q Consensus 865 l~tg~~l~~l~~h-----~~~V~slafSpdg~~LaSgs~DG~V~IWdl~~~ll~~ 914 (917)
..+++........ ...|.++...++|...+. +.++-+..|+.++.....
T Consensus 476 ~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWig-t~~~Gl~~~~~~~~~~~~ 529 (781)
T 3v9f_A 476 LASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIG-TFGGGVGIYTPDMQLVRK 529 (781)
T ss_dssp SSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEE-ESSSCEEEECTTCCEEEE
T ss_pred CCCCeEEecccCcccccccceeEEEEEcCCCCEEEE-EcCCCEEEEeCCCCeEEE
Confidence 8877654332222 467999999998876654 443347778876554433
No 242
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.86 E-value=1.1e-05 Score=85.52 Aligned_cols=235 Identities=8% Similarity=-0.049 Sum_probs=148.3
Q ss_pred cEEEEEecCCceEEEeccCCcee-----eeeeccccceEEEEEeCCCCEEEEE-ecccEEEEEEeccCeeeEEeccCCCc
Q psy3053 593 ISVASVGRDAMLKIHSLKTGRQE-----RSAVLSSMTLSSLCILPDNCTMLVG-CWDSCVVIYDVECGRIVTELAGHEDA 666 (917)
Q Consensus 593 ~~Lasgs~Dg~I~IWd~~t~~~~-----~~~~~~~~~V~sl~~spd~~~Lasg-s~Dg~I~Iwdl~tg~~i~~l~~H~~~ 666 (917)
.+|+.+.. +.|+.+++...... ..+.........+++++++..|..+ ..++.|..++.+.+.....+......
T Consensus 2 ~~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~ 80 (267)
T 1npe_A 2 THLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGS 80 (267)
T ss_dssp EEEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCC
T ss_pred cEEEEEcC-CeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCC
Confidence 34444443 46788887654321 1122223456789999976655554 45789999999866544444333356
Q ss_pred eeEEEecCCCCEEEEE-ECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEEEEC---CCeEEEEEC
Q psy3053 667 ISCVAWDEKRKRLISG-SWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTE---AGELIIWSL 742 (917)
Q Consensus 667 Vt~l~~spd~~~L~Sg-s~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~---dG~I~iwDl 742 (917)
..++++++++..|+.+ ...+.|.+++..... .... ..........++++|++..+..+.. .+.|..+++
T Consensus 81 p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~------~~~~-~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~ 153 (267)
T 1npe_A 81 PEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQ------RRVL-FDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHM 153 (267)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTSCS------CEEE-ECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEET
T ss_pred ccEEEEEecCCeEEEEECCCCEEEEEEcCCCC------EEEE-EECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEec
Confidence 7899999876655544 456789999986431 0111 1112245789999997666655554 368888887
Q ss_pred CCCeeeEEecCCCCCCeEEEEEecCCCEEEEEe-CCCeEEEEECCCCeEEEEeecCCceEEEEEeCCCEEEEEeCCCeEE
Q psy3053 743 ENHLMTQQLSDDINASVNGVLFSEDGCRVLSCG-NNCMLNVYDLTTGMQVCNKVFEEKLLCLSWAGEEKVILGGALGMVY 821 (917)
Q Consensus 743 ~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s-~Dg~I~iwDl~tg~~i~~~~~~~~i~~l~~s~~~~lv~gs~dG~I~ 821 (917)
.... ...+..........+++++++..|..+. ..+.|.++|..................++.+.+..+++....+.|.
T Consensus 154 dg~~-~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~P~gi~~d~~~lyva~~~~~~v~ 232 (267)
T 1npe_A 154 DGTN-RRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGLQYPFAVTSYGKNLYYTDWKTNSVI 232 (267)
T ss_dssp TSCC-CEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEECCCSEEEEEEETTEEEEEETTTTEEE
T ss_pred CCCC-cEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEecCCCCceEEEEeCCEEEEEECCCCeEE
Confidence 6433 2333212335678999999877665554 5678999998755433333333445677777553344444568999
Q ss_pred EEECCCCEEEEEEec
Q psy3053 822 LVDLIQVQLLKQVRA 836 (917)
Q Consensus 822 vwdl~~~~~i~~l~~ 836 (917)
.+|..+++.+..+..
T Consensus 233 ~~d~~~g~~~~~i~~ 247 (267)
T 1npe_A 233 AMDLAISKEMDTFHP 247 (267)
T ss_dssp EEETTTTEEEEEECC
T ss_pred EEeCCCCCceEEEcc
Confidence 999999998888754
No 243
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.85 E-value=8.7e-06 Score=100.37 Aligned_cols=322 Identities=11% Similarity=0.086 Sum_probs=200.9
Q ss_pred cceEEEEEeCCCcEEEEEecCCceEEEeccCCceeeeee-------ccccceEEEEEeCCCCEEEEEecccEEEEEEecc
Q psy3053 581 EAITAVAICGEGISVASVGRDAMLKIHSLKTGRQERSAV-------LSSMTLSSLCILPDNCTMLVGCWDSCVVIYDVEC 653 (917)
Q Consensus 581 ~~Vtsv~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~~~-------~~~~~V~sl~~spd~~~Lasgs~Dg~I~Iwdl~t 653 (917)
..|.++...++|.+.+. +.+ -+.+||..+++...... .....|.++...++|. |..|+..+-|.+++..+
T Consensus 211 ~~i~~i~~d~~g~lwig-t~~-Gl~~~d~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~-lWigt~~~Gl~~~~~~~ 287 (781)
T 3v9f_A 211 NDVRCIYKDTNGNIWIG-TSK-GLALFNANTETFTNFHNNPGNIHGALSSYIFSIKQLKDNK-LWIATELNGIMILDLQQ 287 (781)
T ss_dssp SSEEEEEECTTCCEEEE-ETT-EEEEEETTTTEEEC-----------CCCCEEEEEECTTSE-EEEEESSSCEEEEETTC
T ss_pred CceeEEEEcCCCCEEEE-eCC-cHheECCCCCcEEEEEcCCCccccccCceEEEEEECCCCC-EEEEeCCCCeEEECCCC
Confidence 56889998888876554 444 58889877655432211 2245688888777765 55666656688888877
Q ss_pred CeeeEEec--------------cCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcce--eeeccCCCceE
Q psy3053 654 GRIVTELA--------------GHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSL--VSQLDLDNRIK 717 (917)
Q Consensus 654 g~~i~~l~--------------~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~--~~~~~h~~~V~ 717 (917)
++...... .....|.++...++|. |..|+.++-|..++.....-........ ....-....|.
T Consensus 288 ~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~ 366 (781)
T 3v9f_A 288 NQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNN-IWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVS 366 (781)
T ss_dssp C---------CEEECBCSSTTSBSSSCEEEEEECSSCC-EEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSCEE
T ss_pred CeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCC-EEEEecCCeEEEeCCCCCcceeeccCccccccCCCCCcceE
Confidence 65432111 1345789999988775 6667777888889876542100000000 00011235689
Q ss_pred EEEEeCCCCEEEEEECCCeEEEEECCCCeeeEEec--CCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeEEEEee
Q psy3053 718 CLAISKDNNQLAVGTEAGELIIWSLENHLMTQQLS--DDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCNKV 795 (917)
Q Consensus 718 ~l~~spdg~~Lasgs~dG~I~iwDl~~~~~~~~l~--~~h~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~tg~~i~~~~ 795 (917)
+++..++|. |.+|+.++-|..+|..++....... ......|.++...++|.+ ..|+.++.+..+|..+++......
T Consensus 367 ~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~l-Wigt~~~Gl~~~~~~~~~~~~~~~ 444 (781)
T 3v9f_A 367 SVCDDGQGK-LWIGTDGGGINVFENGKRVAIYNKENRELLSNSVLCSLKDSEGNL-WFGTYLGNISYYNTRLKKFQIIEL 444 (781)
T ss_dssp EEEECTTSC-EEEEEBSSCEEEEETTEEEEECC-----CCCSBEEEEEECTTSCE-EEEETTEEEEEECSSSCEEEECCS
T ss_pred EEEEcCCCC-EEEEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEEEECCCCCE-EEEeccCCEEEEcCCCCcEEEecc
Confidence 999888776 5566766678999987654322111 123467889988887764 456666779999988776543221
Q ss_pred ---cCCceEEEEEeCCCEEEEEeCCCeEEEEECCCCEEEEEEecC-----CCceEEEee--cCCEEEEEeCCCeEEEEEC
Q psy3053 796 ---FEEKLLCLSWAGEEKVILGGALGMVYLVDLIQVQLLKQVRAH-----KDAVLSLHF--DNCTMLVGCWDSCVVIYDV 865 (917)
Q Consensus 796 ---~~~~i~~l~~s~~~~lv~gs~dG~I~vwdl~~~~~i~~l~~h-----~~~V~sis~--dg~~Lasgs~DG~I~Iwdl 865 (917)
....+.++..++++.+.+|+. +.|..+|..+++........ ...|.++.. +|. |..|+.++.+..+|.
T Consensus 445 ~~~~~~~v~~i~~d~~g~lwigt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~-lWigt~~~Gl~~~~~ 522 (781)
T 3v9f_A 445 EKNELLDVRVFYEDKNKKIWIGTH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGR-FWIGTFGGGVGIYTP 522 (781)
T ss_dssp TTTCCCCEEEEEECTTSEEEEEET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCC-EEEEESSSCEEEECT
T ss_pred CCCCCCeEEEEEECCCCCEEEEEC-CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCC-EEEEEcCCCEEEEeC
Confidence 235689999998889999988 66899998876543322222 356888844 444 555665445888988
Q ss_pred cCCeEEEEecC---CCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcce
Q psy3053 866 ECGRIVTELAG---HEDAISCVAWDEKRKRLISGNLVGAPKLYATEFYL 911 (917)
Q Consensus 866 ~tg~~l~~l~~---h~~~V~slafSpdg~~LaSgs~DG~V~IWdl~~~l 911 (917)
.+++...-... ....|.++...++|...++.. +|.|..|+.+...
T Consensus 523 ~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~T~-~Glv~~~d~~~~~ 570 (781)
T 3v9f_A 523 DMQLVRKFNQYEGFCSNTINQIYRSSKGQMWLATG-EGLVCFPSARNFD 570 (781)
T ss_dssp TCCEEEEECTTTTCSCSCEEEEEECTTSCEEEEET-TEEEEESCTTTCC
T ss_pred CCCeEEEccCCCCCCCCeeEEEEECCCCCEEEEEC-CCceEEECCCCCc
Confidence 77654432221 235689999999988666544 6655778776543
No 244
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.84 E-value=1.5e-06 Score=103.27 Aligned_cols=301 Identities=13% Similarity=0.123 Sum_probs=184.9
Q ss_pred CcEEEEEecCCceEEEeccCCceeeeeeccccce---------EEEEEeCCCCEEEEEecccEEEEEEeccCeeeEEecc
Q psy3053 592 GISVASVGRDAMLKIHSLKTGRQERSAVLSSMTL---------SSLCILPDNCTMLVGCWDSCVVIYDVECGRIVTELAG 662 (917)
Q Consensus 592 g~~Lasgs~Dg~I~IWd~~t~~~~~~~~~~~~~V---------~sl~~spd~~~Lasgs~Dg~I~Iwdl~tg~~i~~l~~ 662 (917)
+..++.++.++.|..+|..+|+.+.+........ ..+++ .+..+++++.|+.|..+|..+|+.+.....
T Consensus 68 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~--~~~~v~~~t~dg~l~AlD~~TG~~~W~~~~ 145 (582)
T 1flg_A 68 DGVIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAI--YGDKVFFGTLDASVVALNKNTGKVVWKKKF 145 (582)
T ss_dssp TTEEEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEE--ETTEEEEEETTTEEEEEESSSCCEEEEEEC
T ss_pred CCEEEEEcCCCCEEEEECCCCcEEEEEcCCCCcccccccccCCCccEE--ECCEEEEEeCCCEEEEEECCCCCEEeeecC
Confidence 3355556654448999999999887765432210 11222 356788889999999999999999877653
Q ss_pred CCC----cee-EEEecC---CCC-EEEEEE------CCCeEEEEeCCCCCCCccCCcc--eee-----------------
Q psy3053 663 HED----AIS-CVAWDE---KRK-RLISGS------WDCTVRVWNTGASWSHMKPSKS--LVS----------------- 708 (917)
Q Consensus 663 H~~----~Vt-~l~~sp---d~~-~L~Sgs------~DgtI~vWdl~~~~~~~~~~~~--~~~----------------- 708 (917)
... .+. ...... +++ .+++++ .+|.|..+|..++......... ...
T Consensus 146 ~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~~~~~~~~~p~~~~~~~~~g~~g~~~ 225 (582)
T 1flg_A 146 ADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEGHMGRLNGKDSTVTGDVKAPS 225 (582)
T ss_dssp SCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEESSTTCEEEETTEEEEESSCTTCTT
T ss_pred CCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEEeecCCCccccccccCccccccccccccc
Confidence 321 111 111111 122 566654 3789999998887422211000 000
Q ss_pred -------------e--ccCCCceEEEEEeCCCCEEEEEEC--------------------C----CeEEEEECCCCeeeE
Q psy3053 709 -------------Q--LDLDNRIKCLAISKDNNQLAVGTE--------------------A----GELIIWSLENHLMTQ 749 (917)
Q Consensus 709 -------------~--~~h~~~V~~l~~spdg~~Lasgs~--------------------d----G~I~iwDl~~~~~~~ 749 (917)
. .+....-..++++|+...+.+++. | +.|..+|..+|+.+.
T Consensus 226 w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W 305 (582)
T 1flg_A 226 WPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKW 305 (582)
T ss_dssp SCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCEEE
T ss_pred CCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCCCEEE
Confidence 0 000011124677788888887763 2 689999999999998
Q ss_pred EecCC-CCC----CeE-EEEEe---cCCC---EEEEEeCCCeEEEEECCCCeEEEEeecCCce-----------------
Q psy3053 750 QLSDD-INA----SVN-GVLFS---EDGC---RVLSCGNNCMLNVYDLTTGMQVCNKVFEEKL----------------- 800 (917)
Q Consensus 750 ~l~~~-h~~----~V~-~v~fs---pdg~---~L~s~s~Dg~I~iwDl~tg~~i~~~~~~~~i----------------- 800 (917)
.+... |.. .+. -+.+. .+|+ .++.++.+|.++++|..+|+.+........+
T Consensus 306 ~~q~~~~d~wd~~~~~~p~l~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~ 385 (582)
T 1flg_A 306 FYQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNITWASHIDLKTGRPVERE 385 (582)
T ss_dssp EEESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCCSEEEECTTTCCEEECT
T ss_pred EEeCCCCCcccccCCCCcEEEeeecCCCCEEEEEEEECCCceEEEEECCCCCEecccccccCccccccccccCCCEeEcc
Confidence 87632 211 111 12222 4674 6788899999999999999988765543210
Q ss_pred -----------------------------EEEEEeCC-CEEEEEe---------------------------------CC
Q psy3053 801 -----------------------------LCLSWAGE-EKVILGG---------------------------------AL 817 (917)
Q Consensus 801 -----------------------------~~l~~s~~-~~lv~gs---------------------------------~d 817 (917)
..++++|+ +.+++.. ..
T Consensus 386 ~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~p~~~~~~ 465 (582)
T 1flg_A 386 GQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSAYLGMGFRIKRMYDDHV 465 (582)
T ss_dssp TCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEESCSSCS
T ss_pred ccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhcceeeecccccccCCCceeccceeecCCCCCCc
Confidence 01233432 2333221 35
Q ss_pred CeEEEEECCCCEEEEEEecCCCce-EEEeecCCEEEEEeCCCeEEEEECcCCeEEEEecCCCCCE-EEEEEcCCCCEEE
Q psy3053 818 GMVYLVDLIQVQLLKQVRAHKDAV-LSLHFDNCTMLVGCWDSCVVIYDVECGRIVTELAGHEDAI-SCVAWDEKRKRLI 894 (917)
Q Consensus 818 G~I~vwdl~~~~~i~~l~~h~~~V-~sis~dg~~Lasgs~DG~I~Iwdl~tg~~l~~l~~h~~~V-~slafSpdg~~La 894 (917)
|.|..||+.+++.+-+........ ..+...+..++.|+.||.++.||.++|+.+.+++...+.+ .-+.+..+|+..+
T Consensus 466 G~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~~~~~~g~~a~P~~y~~~G~qYv 544 (582)
T 1flg_A 466 GSLRAMDPVSGKVVWEHKEHLPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQYL 544 (582)
T ss_dssp EEEEEECTTTCCEEEEEEESSCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred ceEEEEECCCCCEEEEecCCCCCcccceEeCCCEEEEECCCCcEEEEECCCCCEEEEecCCCCcccCceEEEECCEEEE
Confidence 889999999999887765432211 1234467888889999999999999999999887543322 2256667887444
No 245
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.79 E-value=7.2e-07 Score=108.01 Aligned_cols=275 Identities=9% Similarity=0.072 Sum_probs=176.8
Q ss_pred CCEEEEEecccEEEEEEeccCeeeEEeccCCCc----------e-eEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccC
Q psy3053 634 NCTMLVGCWDSCVVIYDVECGRIVTELAGHEDA----------I-SCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKP 702 (917)
Q Consensus 634 ~~~Lasgs~Dg~I~Iwdl~tg~~i~~l~~H~~~----------V-t~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~ 702 (917)
+..+++++.++.|..+|..+|+.+..+...... + ..++. .+..++.++.|+.|..+|..++......
T Consensus 66 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~~~W~~ 143 (668)
T 1kv9_A 66 DGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVAL--WGDKVYVGTLDGRLIALDAKTGKAIWSQ 143 (668)
T ss_dssp TTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--EBTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred CCEEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEE--ECCEEEEEcCCCEEEEEECCCCCEeeee
Confidence 557777888999999999999998877543221 1 11222 3467888899999999999887422110
Q ss_pred CcceeeeccCCCceEE-EEEeCCCCEEEEEEC------CCeEEEEECCCCeeeEEecCCCC-------------------
Q psy3053 703 SKSLVSQLDLDNRIKC-LAISKDNNQLAVGTE------AGELIIWSLENHLMTQQLSDDIN------------------- 756 (917)
Q Consensus 703 ~~~~~~~~~h~~~V~~-l~~spdg~~Lasgs~------dG~I~iwDl~~~~~~~~l~~~h~------------------- 756 (917)
... .......+.+ ..+ .+..+++++. +|.|..+|..+|+.+..+.....
T Consensus 144 ~~~---~~~~~~~~~~~P~v--~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~ 218 (668)
T 1kv9_A 144 QTT---DPAKPYSITGAPRV--VKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQ 218 (668)
T ss_dssp ECS---CTTSSCBCCSCCEE--ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCC
T ss_pred ccC---CCCCcceecCCCEE--ECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCC
Confidence 000 0000011110 011 1345555543 58999999999999887752110
Q ss_pred -----------CCeEEEEEecCCCEEEEEeCCC-------------------eEEEEECCCCeEEEEeecC---------
Q psy3053 757 -----------ASVNGVLFSEDGCRVLSCGNNC-------------------MLNVYDLTTGMQVCNKVFE--------- 797 (917)
Q Consensus 757 -----------~~V~~v~fspdg~~L~s~s~Dg-------------------~I~iwDl~tg~~i~~~~~~--------- 797 (917)
.....++++|++..++.++.++ .|..+|..+|+.+......
T Consensus 219 g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~ 298 (668)
T 1kv9_A 219 GDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTA 298 (668)
T ss_dssp SSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCC
T ss_pred ccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccC
Confidence 0112468888888888887766 3999999999998776542
Q ss_pred -CceEEEEEeCCC----EEEEEeCCCeEEEEECCCCEEEEEEecCCC---------------------------------
Q psy3053 798 -EKLLCLSWAGEE----KVILGGALGMVYLVDLIQVQLLKQVRAHKD--------------------------------- 839 (917)
Q Consensus 798 -~~i~~l~~s~~~----~lv~gs~dG~I~vwdl~~~~~i~~l~~h~~--------------------------------- 839 (917)
.+........++ .+++++.+|.++++|..+|+.+........
T Consensus 299 ~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~ 378 (668)
T 1kv9_A 299 TQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPF 378 (668)
T ss_dssp CSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTT
T ss_pred CCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEeccccccccccccccccccCCccccccccccCCeeEECCCCc
Confidence 222222222233 478889999999999999998854432110
Q ss_pred -----ceEEEeecCCEEEEE------------------------------------eCCCeEEEEECcCCeEEEEecCCC
Q psy3053 840 -----AVLSLHFDNCTMLVG------------------------------------CWDSCVVIYDVECGRIVTELAGHE 878 (917)
Q Consensus 840 -----~V~sis~dg~~Lasg------------------------------------s~DG~I~Iwdl~tg~~l~~l~~h~ 878 (917)
.-.+++++...+++. ..+|.|..||+.+|+.+.....+.
T Consensus 379 G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~~~ 458 (668)
T 1kv9_A 379 GAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYPT 458 (668)
T ss_dssp CSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEESS
T ss_pred cccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCCCcEEEEccCCC
Confidence 002344554554431 124889999999999988776433
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEecC-cceEEEEe
Q psy3053 879 DAISCVAWDEKRKRLISGNLVGAPKLYATE-FYLLYVLT 916 (917)
Q Consensus 879 ~~V~slafSpdg~~LaSgs~DG~V~IWdl~-~~ll~~Lt 916 (917)
++....+...+..+++++.||.++.||.+ +..+..+.
T Consensus 459 -~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l~~~~ 496 (668)
T 1kv9_A 459 -HWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFE 496 (668)
T ss_dssp -SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred -CCcCceeEeCCCEEEEECCcccchhhhhhcChhheEec
Confidence 33334455578899999999999999997 55666654
No 246
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=98.79 E-value=3.2e-06 Score=95.43 Aligned_cols=230 Identities=11% Similarity=0.053 Sum_probs=146.7
Q ss_pred CCCCEEEE-EecccEEEEEEeccC----eeeEEec------c-CCCceeEEEecCCCCEEEEEECC------CeEEEEeC
Q psy3053 632 PDNCTMLV-GCWDSCVVIYDVECG----RIVTELA------G-HEDAISCVAWDEKRKRLISGSWD------CTVRVWNT 693 (917)
Q Consensus 632 pd~~~Las-gs~Dg~I~Iwdl~tg----~~i~~l~------~-H~~~Vt~l~~spd~~~L~Sgs~D------gtI~vWdl 693 (917)
+++++|++ |..++.|+++|+.+. +...++. . -...-..+...|+| .++++..+ |.|.+.|.
T Consensus 93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~ 171 (462)
T 2ece_A 93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDH 171 (462)
T ss_dssp CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECT
T ss_pred ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEEC
Confidence 67777665 455788999999765 6666663 1 11234567788999 77776665 78999998
Q ss_pred CCCCCCccCCcceeeecc----CCCceEEEEEeCCCCEEEEEE-------------------CCCeEEEEECCCCeeeEE
Q psy3053 694 GASWSHMKPSKSLVSQLD----LDNRIKCLAISKDNNQLAVGT-------------------EAGELIIWSLENHLMTQQ 750 (917)
Q Consensus 694 ~~~~~~~~~~~~~~~~~~----h~~~V~~l~~spdg~~Lasgs-------------------~dG~I~iwDl~~~~~~~~ 750 (917)
.+.. ...... ...--..+.|+|+++.++++. .+.+|.+||+.+++.+.+
T Consensus 172 ~T~~--------v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~t 243 (462)
T 2ece_A 172 YSFE--------PLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHS 243 (462)
T ss_dssp TTCC--------EEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEE
T ss_pred CCCe--------EEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeE
Confidence 8762 111111 112234578899999888874 368999999999988888
Q ss_pred ecCC-CCCCeEEEEE--ecCCCEEEEEeC------CCeEEEEECCCCeEEEEeecCCceEEEEEeCCCEEEEEeCCCeEE
Q psy3053 751 LSDD-INASVNGVLF--SEDGCRVLSCGN------NCMLNVYDLTTGMQVCNKVFEEKLLCLSWAGEEKVILGGALGMVY 821 (917)
Q Consensus 751 l~~~-h~~~V~~v~f--spdg~~L~s~s~------Dg~I~iwDl~tg~~i~~~~~~~~i~~l~~s~~~~lv~gs~dG~I~ 821 (917)
+..+ .......+.| +|+|+++.+++. +++|.+|....|... .+.
T Consensus 244 I~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~---------------------------~~~ 296 (462)
T 2ece_A 244 LTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWN---------------------------AEK 296 (462)
T ss_dssp EESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEE---------------------------EEE
T ss_pred EecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCcee---------------------------EEE
Confidence 7743 2234556666 999998887764 557777665433211 111
Q ss_pred EEECCCCEEEEEEe---------cCCCceEEEeecCCEEEEEeC-CCeEEEEECc---CCeEEEEecCCC----------
Q psy3053 822 LVDLIQVQLLKQVR---------AHKDAVLSLHFDNCTMLVGCW-DSCVVIYDVE---CGRIVTELAGHE---------- 878 (917)
Q Consensus 822 vwdl~~~~~i~~l~---------~h~~~V~sis~dg~~Lasgs~-DG~I~Iwdl~---tg~~l~~l~~h~---------- 878 (917)
+.|+.+.+....+. +....-..+++||++|.++.. .+.|.++|+. +.+.+..+....
T Consensus 297 vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G 376 (462)
T 2ece_A 297 VIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAG 376 (462)
T ss_dssp EEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTS
T ss_pred EEeCCCccccccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeecccccccc
Confidence 22222211111110 111222346899999888775 6899999985 345665554321
Q ss_pred ----CCEEEEEEcCCCCEEEEEe
Q psy3053 879 ----DAISCVAWDEKRKRLISGN 897 (917)
Q Consensus 879 ----~~V~slafSpdg~~LaSgs 897 (917)
+.-..++++|||++|+++.
T Consensus 377 ~~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 377 HKLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp CCCCSCCCCEEECTTSSEEEEEC
T ss_pred ccCCCCCCEEEEcCCCCEEEEEc
Confidence 1247799999999999988
No 247
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.73 E-value=3.2e-05 Score=81.80 Aligned_cols=247 Identities=6% Similarity=-0.062 Sum_probs=155.4
Q ss_pred CEEEEEecccEEEEEEeccCeee-----EEeccCCCceeEEEecCCCCEEEEEE-CCCeEEEEeCCCCCCCccCCcceee
Q psy3053 635 CTMLVGCWDSCVVIYDVECGRIV-----TELAGHEDAISCVAWDEKRKRLISGS-WDCTVRVWNTGASWSHMKPSKSLVS 708 (917)
Q Consensus 635 ~~Lasgs~Dg~I~Iwdl~tg~~i-----~~l~~H~~~Vt~l~~spd~~~L~Sgs-~DgtI~vWdl~~~~~~~~~~~~~~~ 708 (917)
.+|+.+. .+.|+.++++..... ..+......+.++++++++..|+.+. .++.|..++..+.. ....
T Consensus 2 ~~l~~~~-~~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~-------~~~~ 73 (267)
T 1npe_A 2 THLLFAQ-TGKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGE-------PTTI 73 (267)
T ss_dssp EEEEEEE-EEEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCC-------CEEE
T ss_pred cEEEEEc-CCeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCC-------cEEE
Confidence 3455544 357888888754321 11222224578999999766665544 56899999986541 1111
Q ss_pred eccCCCceEEEEEeCCCCEEEEE-ECCCeEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEEeC---CCeEEEEE
Q psy3053 709 QLDLDNRIKCLAISKDNNQLAVG-TEAGELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCGN---NCMLNVYD 784 (917)
Q Consensus 709 ~~~h~~~V~~l~~spdg~~Lasg-s~dG~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~---Dg~I~iwD 784 (917)
.........++++++++..+..+ ...+.|.++++.......... ........++++|++..|..+.. .+.|..++
T Consensus 74 ~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~-~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~ 152 (267)
T 1npe_A 74 IRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFD-TGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSH 152 (267)
T ss_dssp ECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC-SSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEE
T ss_pred EECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEE-CCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEe
Confidence 11222467899999976555544 456789999987543322222 22356789999997666665554 36888888
Q ss_pred CCCCeEEEEe-ecCCceEEEEEeCC-CEEEE-EeCCCeEEEEECCCCEEEEEEecCCCceEEEeecCCEEEEEe-CCCeE
Q psy3053 785 LTTGMQVCNK-VFEEKLLCLSWAGE-EKVIL-GGALGMVYLVDLIQVQLLKQVRAHKDAVLSLHFDNCTMLVGC-WDSCV 860 (917)
Q Consensus 785 l~tg~~i~~~-~~~~~i~~l~~s~~-~~lv~-gs~dG~I~vwdl~~~~~i~~l~~h~~~V~sis~dg~~Lasgs-~DG~I 860 (917)
+......... ........++++++ +.+.+ ....+.|.++|.........+.+ ......++.++..++.+. .++.|
T Consensus 153 ~dg~~~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~-~~~P~gi~~d~~~lyva~~~~~~v 231 (267)
T 1npe_A 153 MDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEG-LQYPFAVTSYGKNLYYTDWKTNSV 231 (267)
T ss_dssp TTSCCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEEC-CCSEEEEEEETTEEEEEETTTTEE
T ss_pred cCCCCcEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEecC-CCCceEEEEeCCEEEEEECCCCeE
Confidence 7543221111 12245788999874 45554 44568999999976544433332 334456767777776666 45899
Q ss_pred EEEECcCCeEEEEecCCC-CCEEEEEEcCCCC
Q psy3053 861 VIYDVECGRIVTELAGHE-DAISCVAWDEKRK 891 (917)
Q Consensus 861 ~Iwdl~tg~~l~~l~~h~-~~V~slafSpdg~ 891 (917)
.++|..+++.+..+.... .....+++.|++.
T Consensus 232 ~~~d~~~g~~~~~i~~g~~~~p~gi~~~~~~~ 263 (267)
T 1npe_A 232 IAMDLAISKEMDTFHPHKQTRLYGITIALSQC 263 (267)
T ss_dssp EEEETTTTEEEEEECCSSCCCCCCEEEECSCC
T ss_pred EEEeCCCCCceEEEccccccccceeeecCccC
Confidence 999999999988886443 2467788888764
No 248
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=98.72 E-value=1.3e-06 Score=101.95 Aligned_cols=227 Identities=9% Similarity=-0.001 Sum_probs=161.8
Q ss_pred CCCEEEEEec-ccEEEEEEeccCeeeEEecc-CCCceeEEEe-c-CCCCEEEEEEC------------------CCeEEE
Q psy3053 633 DNCTMLVGCW-DSCVVIYDVECGRIVTELAG-HEDAISCVAW-D-EKRKRLISGSW------------------DCTVRV 690 (917)
Q Consensus 633 d~~~Lasgs~-Dg~I~Iwdl~tg~~i~~l~~-H~~~Vt~l~~-s-pd~~~L~Sgs~------------------DgtI~v 690 (917)
||+++.+... ++.|.+.|+++.++.+.+.- .......+++ + |++.+++.++. ++.+.+
T Consensus 100 DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtv 179 (595)
T 1fwx_A 100 DGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTA 179 (595)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEE
T ss_pred CCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEE
Confidence 7887777655 56799999999998875432 2245778887 5 89999988852 457899
Q ss_pred EeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEEEECCC-----------------------------------
Q psy3053 691 WNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAG----------------------------------- 735 (917)
Q Consensus 691 Wdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~dG----------------------------------- 735 (917)
.|..+. .......-......++++|+|+++++.+.+.
T Consensus 180 ID~~t~--------~v~~qI~Vgg~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~ 251 (595)
T 1fwx_A 180 VDADKW--------EVAWQVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQ 251 (595)
T ss_dssp EETTTT--------EEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSE
T ss_pred EECCCC--------eEEEEEEeCCCccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCee
Confidence 998765 2222222222456788999999988887553
Q ss_pred ---eEEEEECCC--Cee-eEEecCCCCCCeEEEEEecCCCEEEEEe-CCCeEEEEECCCCe------------EEEEeec
Q psy3053 736 ---ELIIWSLEN--HLM-TQQLSDDINASVNGVLFSEDGCRVLSCG-NNCMLNVYDLTTGM------------QVCNKVF 796 (917)
Q Consensus 736 ---~I~iwDl~~--~~~-~~~l~~~h~~~V~~v~fspdg~~L~s~s-~Dg~I~iwDl~tg~------------~i~~~~~ 796 (917)
.|.+.|..+ ++. +..+. ......++.++|||+++++++ .+.+|.++|+.+.+ .......
T Consensus 252 ~i~~V~VID~~~~~~~~~~~~Ip--vg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~v 329 (595)
T 1fwx_A 252 ELNGVKVVDGRKEASSLFTRYIP--IANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPEL 329 (595)
T ss_dssp EETTEEEEECSGGGCCSSEEEEE--EESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBC
T ss_pred EECcEEEEeCcccCCceeEEEEe--cCCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCC
Confidence 477777776 444 44443 234667899999999887776 57899999998653 4556667
Q ss_pred CCceEEEEEeCCCEEE-EEeCCCeEEEEECCC----------CEEEEEEecCCCce-EEE------eecCCEEEEEeCC-
Q psy3053 797 EEKLLCLSWAGEEKVI-LGGALGMVYLVDLIQ----------VQLLKQVRAHKDAV-LSL------HFDNCTMLVGCWD- 857 (917)
Q Consensus 797 ~~~i~~l~~s~~~~lv-~gs~dG~I~vwdl~~----------~~~i~~l~~h~~~V-~si------s~dg~~Lasgs~D- 857 (917)
......++|+++|.+. +..-+++|.+||+.+ .+.+.++..|..+- .+. ++||++|+++..-
T Consensus 330 G~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk~s 409 (595)
T 1fwx_A 330 GLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSKFS 409 (595)
T ss_dssp CSCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEESCC
T ss_pred CCCcceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEcCCCC
Confidence 7789999999988644 455689999999977 56788887765532 222 6799999987642
Q ss_pred -CeE-----------EEEECcCCe
Q psy3053 858 -SCV-----------VIYDVECGR 869 (917)
Q Consensus 858 -G~I-----------~Iwdl~tg~ 869 (917)
.++ .++|+..++
T Consensus 410 kdr~~~~gp~~~~~~ql~dis~~~ 433 (595)
T 1fwx_A 410 KDRFLNVGPLKPENDQLIDISGDK 433 (595)
T ss_dssp TTSSCCCCSSCCEEEEEEECSSSS
T ss_pred ccccccCCCCCCCcceEEEcCCCc
Confidence 223 788986554
No 249
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.68 E-value=7.4e-06 Score=86.87 Aligned_cols=198 Identities=13% Similarity=0.127 Sum_probs=138.9
Q ss_pred eeccCCC--ceEEEEEeCCCCEEEEEEC--CCeEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEE-eCCCeEEE
Q psy3053 708 SQLDLDN--RIKCLAISKDNNQLAVGTE--AGELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSC-GNNCMLNV 782 (917)
Q Consensus 708 ~~~~h~~--~V~~l~~spdg~~Lasgs~--dG~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~-s~Dg~I~i 782 (917)
....|+. ....+++++++.+.++.+. ++.|.++|+.+++.+..+..+.......+++. |..|..+ -.++.+.+
T Consensus 13 ~~~p~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~~~v~v 90 (266)
T 2iwa_A 13 NEFPHDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLKNIGFI 90 (266)
T ss_dssp EEEECCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETTCSEEEE
T ss_pred EEEECCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEecCCEEEE
Confidence 3445554 3589999998755555443 57999999999999988763322233455554 4455544 46789999
Q ss_pred EECCCCeEEEEeecC-CceEEEEEeCCCEEEEEeCCCeEEEEECCCCEEEEEEecCC--C---ceEEEee-cCCEEEEEe
Q psy3053 783 YDLTTGMQVCNKVFE-EKLLCLSWAGEEKVILGGALGMVYLVDLIQVQLLKQVRAHK--D---AVLSLHF-DNCTMLVGC 855 (917)
Q Consensus 783 wDl~tg~~i~~~~~~-~~i~~l~~s~~~~lv~gs~dG~I~vwdl~~~~~i~~l~~h~--~---~V~sis~-dg~~Lasgs 855 (917)
+|..+++.+..+... ..-..++.++. .++++..++.|.++|..+.+.+..+.... . ....+.+ +|...+...
T Consensus 91 iD~~t~~v~~~i~~g~~~g~glt~Dg~-~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~dg~lyvn~~ 169 (266)
T 2iwa_A 91 YDRRTLSNIKNFTHQMKDGWGLATDGK-ILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYINGEVWANIW 169 (266)
T ss_dssp EETTTTEEEEEEECCSSSCCEEEECSS-SEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEETTEEEEEET
T ss_pred EECCCCcEEEEEECCCCCeEEEEECCC-EEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEECCEEEEecC
Confidence 999999999888765 44455666665 55566678999999999999888876322 1 2344433 554444444
Q ss_pred CCCeEEEEECcCCeEEEEecCC-------------CCCEEEEEEcCCCCEEE-EEeCCCcEEEEecC
Q psy3053 856 WDSCVVIYDVECGRIVTELAGH-------------EDAISCVAWDEKRKRLI-SGNLVGAPKLYATE 908 (917)
Q Consensus 856 ~DG~I~Iwdl~tg~~l~~l~~h-------------~~~V~slafSpdg~~La-Sgs~DG~V~IWdl~ 908 (917)
.++.|.+.|..+++.+..+... ......++|+|+++.++ ++...+.|.+-++.
T Consensus 170 ~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~ 236 (266)
T 2iwa_A 170 QTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLH 236 (266)
T ss_dssp TSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEE
T ss_pred CCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEe
Confidence 5789999999999999888632 13568999999987555 55577888887764
No 250
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=98.66 E-value=7.8e-07 Score=103.66 Aligned_cols=267 Identities=11% Similarity=0.016 Sum_probs=182.8
Q ss_pred EEEEEecccEEEEEEeccCeeeEEec----------------------c-----------C------CCceeEEEecC--
Q psy3053 636 TMLVGCWDSCVVIYDVECGRIVTELA----------------------G-----------H------EDAISCVAWDE-- 674 (917)
Q Consensus 636 ~Lasgs~Dg~I~Iwdl~tg~~i~~l~----------------------~-----------H------~~~Vt~l~~sp-- 674 (917)
.+.+|+..|.++|+-+.+++.+..+. + + .+.......|.
T Consensus 17 ~f~s~g~~g~~~v~g~ps~r~~~~i~vf~~~~~~g~g~~~es~~~l~~~~~~~~~~~~~~~g~~~~~~gd~hh~~~s~t~ 96 (595)
T 1fwx_A 17 GFWSSGQSGEMRILGIPSMRELMRVPVFNRCSATGWGQTNESVRIHERTMSERTKKFLAANGKRIHDNGDLHHVHMSFTE 96 (595)
T ss_dssp EEECCBTTCEEEEEEETTCCEEEEEESSSCCTTTCTTTBHHHHHHHHTTCCHHHHHHHHHTTCSSCCCCCBCCEEEEEET
T ss_pred EEeeCCcCceEEEEecCCcceEEEeeeecCCCCcccCCchhHHHHHhccCCccchhhhhccCceecccCCCCccccCCCC
Confidence 35678889999999998887766442 0 0 11222344444
Q ss_pred ---CCCEEEEEEC-CCeEEEEeCCCCCCCccCCcceee--eccCCCceEEEEE-e-CCCCEEEEEE--------------
Q psy3053 675 ---KRKRLISGSW-DCTVRVWNTGASWSHMKPSKSLVS--QLDLDNRIKCLAI-S-KDNNQLAVGT-------------- 732 (917)
Q Consensus 675 ---d~~~L~Sgs~-DgtI~vWdl~~~~~~~~~~~~~~~--~~~h~~~V~~l~~-s-pdg~~Lasgs-------------- 732 (917)
||++++.... ++.|.+.|+.+. .... .......+..+++ + |+++++++++
T Consensus 97 g~~DG~~lfVnd~~~~rVavIdl~t~--------~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~ 168 (595)
T 1fwx_A 97 GKYDGRFLFMNDKANTRVARVRCDVM--------KCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNME 168 (595)
T ss_dssp TEEEEEEEEEEETTTTEEEEEETTTT--------EEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTT
T ss_pred CCcCCCEEEEEcCCCCEEEEEECCCc--------eEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccc
Confidence 7787777665 457999999876 2222 2333456788887 5 8999998885
Q ss_pred ----CCCeEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEEeCCC------------------------------
Q psy3053 733 ----EAGELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCGNNC------------------------------ 778 (917)
Q Consensus 733 ----~dG~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~Dg------------------------------ 778 (917)
.++.+.++|..+.+...++.-+ +....++++|+|+++++++.+.
T Consensus 169 ~~~~~~~~vtvID~~t~~v~~qI~Vg--g~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~ 246 (595)
T 1fwx_A 169 DVANYVNVFTAVDADKWEVAWQVLVS--GNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIA 246 (595)
T ss_dssp CGGGEEEEEEEEETTTTEEEEEEEES--SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHH
T ss_pred cccccCceEEEEECCCCeEEEEEEeC--CCccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEecc
Confidence 2457999999999998888732 2457788999999999888553
Q ss_pred --------eEEEEECCC--CeE-EEEeecCCceEEEEEeCCCEEE--EEeCCCeEEEEECCCCE------------EEEE
Q psy3053 779 --------MLNVYDLTT--GMQ-VCNKVFEEKLLCLSWAGEEKVI--LGGALGMVYLVDLIQVQ------------LLKQ 833 (917)
Q Consensus 779 --------~I~iwDl~t--g~~-i~~~~~~~~i~~l~~s~~~~lv--~gs~dG~I~vwdl~~~~------------~i~~ 833 (917)
.|.+.|.++ ++. +..+.......++.++|+|..+ ++..+++|.++|+.+.+ ....
T Consensus 247 ~Gk~~~i~~V~VID~~~~~~~~~~~~Ipvg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~ 326 (595)
T 1fwx_A 247 AGDYQELNGVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAE 326 (595)
T ss_dssp HTCSEEETTEEEEECSGGGCCSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEEC
T ss_pred CCCeeEECcEEEEeCcccCCceeEEEEecCCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEE
Confidence 477788877 544 5566666677889999988644 34456899999998653 4444
Q ss_pred EecCCCce-EEEeecCCEEEEEeCCCeEEEEECcC----------CeEEEEecCCCCCE-----EEEEEcCCCCEEEEEe
Q psy3053 834 VRAHKDAV-LSLHFDNCTMLVGCWDSCVVIYDVEC----------GRIVTELAGHEDAI-----SCVAWDEKRKRLISGN 897 (917)
Q Consensus 834 l~~h~~~V-~sis~dg~~Lasgs~DG~I~Iwdl~t----------g~~l~~l~~h~~~V-----~slafSpdg~~LaSgs 897 (917)
+....++- ++++++|...++...|++|.+||+.+ .+.+..+..|-.+- .++..+|||++|+++.
T Consensus 327 v~vG~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~N 406 (595)
T 1fwx_A 327 PELGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLS 406 (595)
T ss_dssp CBCCSCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEE
T ss_pred cCCCCCcceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEcC
Confidence 44333332 34577884344556799999999987 56788887765432 1224589999999975
Q ss_pred C---CCc----------EEEEecCcceE
Q psy3053 898 L---VGA----------PKLYATEFYLL 912 (917)
Q Consensus 898 ~---DG~----------V~IWdl~~~ll 912 (917)
. |.- -.++|+++..+
T Consensus 407 k~skdr~~~~gp~~~~~~ql~dis~~~m 434 (595)
T 1fwx_A 407 KFSKDRFLNVGPLKPENDQLIDISGDKM 434 (595)
T ss_dssp SCCTTSSCCCCSSCCEEEEEEECSSSSC
T ss_pred CCCccccccCCCCCCCcceEEEcCCCcE
Confidence 3 432 17888876543
No 251
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.66 E-value=4.2e-06 Score=87.94 Aligned_cols=188 Identities=14% Similarity=0.154 Sum_probs=134.8
Q ss_pred eeccCCCce--EEEEEeCCCCEEEEEECCC--eEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEEe-CCCeEEE
Q psy3053 708 SQLDLDNRI--KCLAISKDNNQLAVGTEAG--ELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCG-NNCMLNV 782 (917)
Q Consensus 708 ~~~~h~~~V--~~l~~spdg~~Lasgs~dG--~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s-~Dg~I~i 782 (917)
....|+... ..+.|+ ++.+..+++.+| .|+.+|+.+++.+..+.. ..........+++..|.... .++.+.+
T Consensus 35 ~~~phd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l--~~~~FgeGit~~g~~ly~ltw~~~~v~v 111 (262)
T 3nol_A 35 HSYPHDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIEL--GKRYFGEGISDWKDKIVGLTWKNGLGFV 111 (262)
T ss_dssp EEEECCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEEC--CTTCCEEEEEEETTEEEEEESSSSEEEE
T ss_pred EEecCCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEec--CCccceeEEEEeCCEEEEEEeeCCEEEE
Confidence 344555444 789998 677777777766 899999999999988863 23333333334455555554 5889999
Q ss_pred EECCCCeEEEEeecCCceEEEEEeCCCEEEEEeCCCeEEEEECCCCEEEEEEecC--CCc---eEEEee-cCCEEEEEeC
Q psy3053 783 YDLTTGMQVCNKVFEEKLLCLSWAGEEKVILGGALGMVYLVDLIQVQLLKQVRAH--KDA---VLSLHF-DNCTMLVGCW 856 (917)
Q Consensus 783 wDl~tg~~i~~~~~~~~i~~l~~s~~~~lv~gs~dG~I~vwdl~~~~~i~~l~~h--~~~---V~sis~-dg~~Lasgs~ 856 (917)
+|..+.+.+.++.....-..++.++. .++.+..++.|.++|..+.+.+.++... ..+ +..+.+ +|+..+....
T Consensus 112 ~D~~t~~~~~ti~~~~eG~glt~dg~-~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~~G~lyan~w~ 190 (262)
T 3nol_A 112 WNIRNLRQVRSFNYDGEGWGLTHNDQ-YLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWVDGEIFANVWQ 190 (262)
T ss_dssp EETTTCCEEEEEECSSCCCCEEECSS-CEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEETTEEEEEETT
T ss_pred EECccCcEEEEEECCCCceEEecCCC-EEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEECCEEEEEEcc
Confidence 99999999999887665556666655 6666666889999999999988887642 222 333433 5654444446
Q ss_pred CCeEEEEECcCCeEEEEecCC------------CCCEEEEEEcCCCCEEEEEeCC
Q psy3053 857 DSCVVIYDVECGRIVTELAGH------------EDAISCVAWDEKRKRLISGNLV 899 (917)
Q Consensus 857 DG~I~Iwdl~tg~~l~~l~~h------------~~~V~slafSpdg~~LaSgs~D 899 (917)
++.|.+.|.++|+.+..+... .+..+.+||+|+++.|+..|..
T Consensus 191 ~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~ 245 (262)
T 3nol_A 191 TNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKL 245 (262)
T ss_dssp SSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEETT
T ss_pred CCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECCC
Confidence 889999999999999887532 1356899999998888877754
No 252
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.64 E-value=6e-06 Score=97.93 Aligned_cols=275 Identities=11% Similarity=0.047 Sum_probs=170.1
Q ss_pred CCEEEEEec-ccEEEEEEe-ccCeeeEEeccCCC-c---------e-eEEEecCCCCEEEEEECCCeEEEEeCCCCCCCc
Q psy3053 634 NCTMLVGCW-DSCVVIYDV-ECGRIVTELAGHED-A---------I-SCVAWDEKRKRLISGSWDCTVRVWNTGASWSHM 700 (917)
Q Consensus 634 ~~~Lasgs~-Dg~I~Iwdl-~tg~~i~~l~~H~~-~---------V-t~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~ 700 (917)
+..+.+++. ++.|..+|. .+|+.+........ . + ..++. .+..++.++.|+.+..+|..++....
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~~~W 139 (571)
T 2ad6_A 62 GDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAY--GAGQIVKKQANGHLLALDAKTGKINW 139 (571)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEE
T ss_pred CCEEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEE--ECCEEEEEeCCCEEEEEECCCCCEEE
Confidence 445666666 888999999 89998877653221 0 0 11223 34678888899999999998873221
Q ss_pred cCCcceeeeccCCCceEE-EEEeCCCCEEEEEEC------CCeEEEEECCCCeeeEEecCCCCC----------------
Q psy3053 701 KPSKSLVSQLDLDNRIKC-LAISKDNNQLAVGTE------AGELIIWSLENHLMTQQLSDDINA---------------- 757 (917)
Q Consensus 701 ~~~~~~~~~~~h~~~V~~-l~~spdg~~Lasgs~------dG~I~iwDl~~~~~~~~l~~~h~~---------------- 757 (917)
..... .......+.+ ..+ .+..+++++. +|.|..+|..+|+.+..+......
T Consensus 140 ~~~~~---~~~~~~~~~~~P~v--~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~~~ 214 (571)
T 2ad6_A 140 EVEVC---DPKVGSTLTQAPFV--AKDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHY 214 (571)
T ss_dssp EEECC---CGGGTCBCCSCCEE--ETTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGG
T ss_pred EecCC---CCCccceeccCCEE--ECCEEEEEecCCccCCCCEEEEEECCCCcEEEEEccCCCccccccCcccccccccc
Confidence 10000 0000001111 111 1345666655 789999999999988876522110
Q ss_pred ---------------------CeEEEEEecCCCEEEEEeCC----------------CeEEEEECCCCeEEEEeecCC--
Q psy3053 758 ---------------------SVNGVLFSEDGCRVLSCGNN----------------CMLNVYDLTTGMQVCNKVFEE-- 798 (917)
Q Consensus 758 ---------------------~V~~v~fspdg~~L~s~s~D----------------g~I~iwDl~tg~~i~~~~~~~-- 798 (917)
....+++.++...+..++.+ +.|..+|..+|+.+.......
T Consensus 215 G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d 294 (571)
T 2ad6_A 215 GQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHD 294 (571)
T ss_dssp CCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTC
T ss_pred cccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCc
Confidence 00235677766677666532 369999999999887765321
Q ss_pred --------ceEEEEEeCCC----EEEEEeCCCeEEEEECCCCEEEEEEecCC-------------Cce------------
Q psy3053 799 --------KLLCLSWAGEE----KVILGGALGMVYLVDLIQVQLLKQVRAHK-------------DAV------------ 841 (917)
Q Consensus 799 --------~i~~l~~s~~~----~lv~gs~dG~I~vwdl~~~~~i~~l~~h~-------------~~V------------ 841 (917)
...-+....++ .++.++.+|.++++|..+++.+....... .++
T Consensus 295 ~~d~~~~~~p~l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~ 374 (571)
T 2ad6_A 295 EWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHK 374 (571)
T ss_dssp SSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCC
T ss_pred ccccccCCCCEEEecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCccccccccccCCceecccccCCCCCCC
Confidence 11112221234 36678889999999999999887664321 111
Q ss_pred ----------------EEEeecCCEEEEEe-------------------------------------CCCeEEEEECcCC
Q psy3053 842 ----------------LSLHFDNCTMLVGC-------------------------------------WDSCVVIYDVECG 868 (917)
Q Consensus 842 ----------------~sis~dg~~Lasgs-------------------------------------~DG~I~Iwdl~tg 868 (917)
.+++|+...+++.+ .+|.|..||..++
T Consensus 375 ~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG 454 (571)
T 2ad6_A 375 GTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTG 454 (571)
T ss_dssp EEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTC
T ss_pred ceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCccccccceeccCccccCCCCCCeEEEEECCCC
Confidence 13355556665543 3578999999999
Q ss_pred eEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecC-cceEEEEe
Q psy3053 869 RIVTELAGHEDAISCVAWDEKRKRLISGNLVGAPKLYATE-FYLLYVLT 916 (917)
Q Consensus 869 ~~l~~l~~h~~~V~slafSpdg~~LaSgs~DG~V~IWdl~-~~ll~~Lt 916 (917)
+.+.+.... .++.+......+..++.++.||.|+.||.. +..+..+.
T Consensus 455 ~~~W~~~~~-~~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~lw~~~ 502 (571)
T 2ad6_A 455 KAKWTKWEK-FAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFK 502 (571)
T ss_dssp CEEEEEEES-SCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred CEEEEecCC-CCccceeEEECCCEEEEEcCCCeEEEEECCCCCEEEEEe
Confidence 988877532 222222333356788889999999999986 55776654
No 253
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.58 E-value=1.4e-05 Score=94.92 Aligned_cols=277 Identities=12% Similarity=0.065 Sum_probs=169.4
Q ss_pred CCEEEEEec-ccEEEEEEe-ccCeeeEEeccCCCc-----------eeEEEecCCCCE----EEEEECCCeEEEEeCCCC
Q psy3053 634 NCTMLVGCW-DSCVVIYDV-ECGRIVTELAGHEDA-----------ISCVAWDEKRKR----LISGSWDCTVRVWNTGAS 696 (917)
Q Consensus 634 ~~~Lasgs~-Dg~I~Iwdl-~tg~~i~~l~~H~~~-----------Vt~l~~spd~~~----L~Sgs~DgtI~vWdl~~~ 696 (917)
+..+.+++. ++.|.-+|. .+|+.+......... ...++++|.+.. |+.++.|+.+..+|..++
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG 141 (599)
T 1w6s_A 62 DGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETG 141 (599)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTC
T ss_pred CCEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEECCCC
Confidence 445666666 888999999 899988776543211 123455433334 888889999999999887
Q ss_pred CCCccCCcceeeeccCCCceEE-EEEeCCCCEEEEEE------CCCeEEEEECCCCeeeEEecCCCCC------------
Q psy3053 697 WSHMKPSKSLVSQLDLDNRIKC-LAISKDNNQLAVGT------EAGELIIWSLENHLMTQQLSDDINA------------ 757 (917)
Q Consensus 697 ~~~~~~~~~~~~~~~h~~~V~~-l~~spdg~~Lasgs------~dG~I~iwDl~~~~~~~~l~~~h~~------------ 757 (917)
......... .......+.+ ..+. + ..+++++ .+|.|+.+|..+|+.+.........
T Consensus 142 ~~~W~~~~~---~~~~~~~~~ssP~v~-~-g~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~ 216 (599)
T 1w6s_A 142 ETVWKVENS---DIKVGSTLTIAPYVV-K-DKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIK 216 (599)
T ss_dssp CEEEEEECC---CGGGTCBCCSCCEEE-T-TEEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTT
T ss_pred CEEEeecCC---CCCccceeecCCEEE-C-CEEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCCccccccccccccc
Confidence 322110000 0000001111 1111 3 3555555 3799999999999998876532111
Q ss_pred -------------------------CeEEEEEecCCCEEEEEeCC----------------CeEEEEECCCCeEEEEeec
Q psy3053 758 -------------------------SVNGVLFSEDGCRVLSCGNN----------------CMLNVYDLTTGMQVCNKVF 796 (917)
Q Consensus 758 -------------------------~V~~v~fspdg~~L~s~s~D----------------g~I~iwDl~tg~~i~~~~~ 796 (917)
.-...++.++...++.+..+ +.|..+|..+|+.+.....
T Consensus 217 ~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~ 296 (599)
T 1w6s_A 217 NPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQK 296 (599)
T ss_dssp CGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEES
T ss_pred cccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeec
Confidence 00135667777777777655 3899999999999877654
Q ss_pred CC----------ceEEEEEe-CCC----EEEEEeCCCeEEEEECCCCEEEEEEecCC-------------Cc--------
Q psy3053 797 EE----------KLLCLSWA-GEE----KVILGGALGMVYLVDLIQVQLLKQVRAHK-------------DA-------- 840 (917)
Q Consensus 797 ~~----------~i~~l~~s-~~~----~lv~gs~dG~I~vwdl~~~~~i~~l~~h~-------------~~-------- 840 (917)
.. ...-+... .++ .++.++.+|.++++|..+|+.+....... .+
T Consensus 297 ~~~d~wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~ 376 (599)
T 1w6s_A 297 TPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKSVDLKTGQPVRDPEYGT 376 (599)
T ss_dssp STTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCCEEECGGGCC
T ss_pred CCCccccccCCCccEEEeccccCCcEEEEEEEECCCcEEEEEECCCCCEeecccccCCcccccccccCCCceeeccccCC
Confidence 31 11112222 334 46668899999999999999887654211 00
Q ss_pred --------------------eEEEeecCCEEEEE---------------------------------e------CCCeEE
Q psy3053 841 --------------------VLSLHFDNCTMLVG---------------------------------C------WDSCVV 861 (917)
Q Consensus 841 --------------------V~sis~dg~~Lasg---------------------------------s------~DG~I~ 861 (917)
-.+++|+.+++++. + .+|.|.
T Consensus 377 ~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~p~~~~~~~~~~G~l~ 456 (599)
T 1w6s_A 377 RMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPGPKGDRQNYEGLGQIK 456 (599)
T ss_dssp CTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSBTTTTBCCEEEE
T ss_pred CCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccccccCCcceecccceeccCCcCCcccCCCcCeEE
Confidence 11223333333321 1 357899
Q ss_pred EEECcCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecC-cceEEEEe
Q psy3053 862 IYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGNLVGAPKLYATE-FYLLYVLT 916 (917)
Q Consensus 862 Iwdl~tg~~l~~l~~h~~~V~slafSpdg~~LaSgs~DG~V~IWdl~-~~ll~~Lt 916 (917)
.||+.+|+.+...... .++.+-.....+..++.++.||.++.||.+ +..+..++
T Consensus 457 A~D~~tG~~~W~~~~~-~~~~~g~~~tagg~vf~gt~dg~l~A~D~~tG~~lW~~~ 511 (599)
T 1w6s_A 457 AYNAITGDYKWEKMER-FAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFK 511 (599)
T ss_dssp EECTTTCCEEEEEEES-SCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred EEECCCCCEEeEecCC-CCccCcceEecCCEEEEECCCCeEEEEECCCCCEEEEee
Confidence 9999999988776521 122111122356788889999999999987 55777765
No 254
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=98.55 E-value=9.1e-06 Score=91.68 Aligned_cols=191 Identities=12% Similarity=0.071 Sum_probs=127.3
Q ss_pred EEe--CCCcEEEE-EecCCceEEEeccCC----ceeeeee-------ccccceEEEEEeCCCCEEEEEecc------cEE
Q psy3053 587 AIC--GEGISVAS-VGRDAMLKIHSLKTG----RQERSAV-------LSSMTLSSLCILPDNCTMLVGCWD------SCV 646 (917)
Q Consensus 587 ~fS--pdg~~Las-gs~Dg~I~IWd~~t~----~~~~~~~-------~~~~~V~sl~~spd~~~Lasgs~D------g~I 646 (917)
.++ +++++|+. +..++.|.++|+.+. +..+.+. .....-..+..+|+| +++++..+ |.|
T Consensus 88 ~~~~~~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v 166 (462)
T 2ece_A 88 NGKPNIERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGI 166 (462)
T ss_dssp TCCTTCCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEE
T ss_pred ccCCCccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeE
Confidence 346 77777655 556889999998754 4444442 011123456778999 66666555 789
Q ss_pred EEEEeccCeeeEEeccCCC---ceeEEEecCCCCEEEEEE-------------------CCCeEEEEeCCCCCCCccCCc
Q psy3053 647 VIYDVECGRIVTELAGHED---AISCVAWDEKRKRLISGS-------------------WDCTVRVWNTGASWSHMKPSK 704 (917)
Q Consensus 647 ~Iwdl~tg~~i~~l~~H~~---~Vt~l~~spd~~~L~Sgs-------------------~DgtI~vWdl~~~~~~~~~~~ 704 (917)
.++|.++++.+.++..-.+ --..+.|+|+++.+++.. .+.+|.+||+.++
T Consensus 167 ~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~-------- 238 (462)
T 2ece_A 167 LMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKR-------- 238 (462)
T ss_dssp EEECTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTT--------
T ss_pred EEEECCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCC--------
Confidence 9999999999988863222 234578899999998885 3689999999865
Q ss_pred ceeeeccC---CCceEEEEE--eCCCCEEEEEEC------CCeEEEEECCCCee--eEEe--cC----C-----------
Q psy3053 705 SLVSQLDL---DNRIKCLAI--SKDNNQLAVGTE------AGELIIWSLENHLM--TQQL--SD----D----------- 754 (917)
Q Consensus 705 ~~~~~~~h---~~~V~~l~~--spdg~~Lasgs~------dG~I~iwDl~~~~~--~~~l--~~----~----------- 754 (917)
........ ......+.| +|+++++.+++. +++|.+|....+.. .+.+ .. .
T Consensus 239 k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~ 318 (462)
T 2ece_A 239 KRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKA 318 (462)
T ss_dssp EEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTE
T ss_pred cEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCcccccccccccccccc
Confidence 11111111 133455555 999998888774 56887766554421 1111 10 0
Q ss_pred CCCCeEEEEEecCCCEEEEEeC-CCeEEEEECC
Q psy3053 755 INASVNGVLFSEDGCRVLSCGN-NCMLNVYDLT 786 (917)
Q Consensus 755 h~~~V~~v~fspdg~~L~s~s~-Dg~I~iwDl~ 786 (917)
.......+.+|+||++|.++.. .+.|.++|+.
T Consensus 319 ~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~ 351 (462)
T 2ece_A 319 VPPLVTDIDISLDDKFLYLSLWGIGEVRQYDIS 351 (462)
T ss_dssp ECCCCCCEEECTTSCEEEEEETTTTEEEEEECS
T ss_pred CCCceeEEEECCCCCEEEEEeCCCCEEEEEEec
Confidence 0245788999999999988775 6789999985
No 255
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.53 E-value=3e-05 Score=80.70 Aligned_cols=189 Identities=16% Similarity=0.135 Sum_probs=133.8
Q ss_pred eeeeccCCC--ceEEEEEeCCCCEEEEEECCC--eEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEE-EEeCCCeE
Q psy3053 706 LVSQLDLDN--RIKCLAISKDNNQLAVGTEAG--ELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVL-SCGNNCML 780 (917)
Q Consensus 706 ~~~~~~h~~--~V~~l~~spdg~~Lasgs~dG--~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~-s~s~Dg~I 780 (917)
+.....|+. -...+.|+. +.+..+++..| .|+.+|+.+++.+....-....--..++. .+..|. ..-.++.+
T Consensus 11 v~~~~phd~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~--~~~~ly~ltw~~~~v 87 (243)
T 3mbr_X 11 VVKRYPHDTTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVA--WRDRLIQLTWRNHEG 87 (243)
T ss_dssp EEEEEECCTTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEE--ETTEEEEEESSSSEE
T ss_pred EEEEcCCCCccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEE--eCCEEEEEEeeCCEE
Confidence 333445543 466899986 55666666654 89999999999998886322222233444 344444 44568899
Q ss_pred EEEECCCCeEEEEeecCCceEEEEEeCCCEEEEEeCCCeEEEEECCCCEEEEEEecCC-----CceEEEee-cCCEEEEE
Q psy3053 781 NVYDLTTGMQVCNKVFEEKLLCLSWAGEEKVILGGALGMVYLVDLIQVQLLKQVRAHK-----DAVLSLHF-DNCTMLVG 854 (917)
Q Consensus 781 ~iwDl~tg~~i~~~~~~~~i~~l~~s~~~~lv~gs~dG~I~vwdl~~~~~i~~l~~h~-----~~V~sis~-dg~~Lasg 854 (917)
.++|..+.+.+.++.....-..++.++. .++++..++.|.++|..+.+.+.++.... ..+..+.+ +|+..+..
T Consensus 88 ~v~D~~tl~~~~ti~~~~~Gwglt~dg~-~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~~G~lyanv 166 (243)
T 3mbr_X 88 FVYDLATLTPRARFRYPGEGWALTSDDS-HLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWVNGELLANV 166 (243)
T ss_dssp EEEETTTTEEEEEEECSSCCCEEEECSS-CEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEETTEEEEEE
T ss_pred EEEECCcCcEEEEEeCCCCceEEeeCCC-EEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEeCCEEEEEE
Confidence 9999999999999888766667776665 67777779999999999999888876422 23345544 55544444
Q ss_pred eCCCeEEEEECcCCeEEEEecCC-------------CCCEEEEEEcCCCCEEEEEeC
Q psy3053 855 CWDSCVVIYDVECGRIVTELAGH-------------EDAISCVAWDEKRKRLISGNL 898 (917)
Q Consensus 855 s~DG~I~Iwdl~tg~~l~~l~~h-------------~~~V~slafSpdg~~LaSgs~ 898 (917)
..+..|.+.|.++|+.+..+... .+..+.+|++|+++.|+..|.
T Consensus 167 w~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK 223 (243)
T 3mbr_X 167 WLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK 223 (243)
T ss_dssp TTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred CCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence 46789999999999999887521 135689999998888777664
No 256
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.50 E-value=3.2e-05 Score=84.31 Aligned_cols=233 Identities=11% Similarity=0.013 Sum_probs=146.1
Q ss_pred eEEEEEeCCCCEEEEEecccEEEEEEeccCeeeEEec-------------------cCCCceeEEEecCCCCEEEEEECC
Q psy3053 625 LSSLCILPDNCTMLVGCWDSCVVIYDVECGRIVTELA-------------------GHEDAISCVAWDEKRKRLISGSWD 685 (917)
Q Consensus 625 V~sl~~spd~~~Lasgs~Dg~I~Iwdl~tg~~i~~l~-------------------~H~~~Vt~l~~spd~~~L~Sgs~D 685 (917)
..++++.++++++.++..++.|..|+..+++...... .....+.++++.+++..|+.+...
T Consensus 21 p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~d~~ 100 (322)
T 2fp8_A 21 PNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIVDCY 100 (322)
T ss_dssp CCCEECCTTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEEETT
T ss_pred ceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCcEEEEECC
Confidence 4577889999878888889999999887665432110 011357889999733456666556
Q ss_pred CeEEEEeCCCCCCCccCCcceeeec--cCCCceEEEEEeC-CCCEEEEEEC-----------------CCeEEEEECCCC
Q psy3053 686 CTVRVWNTGASWSHMKPSKSLVSQL--DLDNRIKCLAISK-DNNQLAVGTE-----------------AGELIIWSLENH 745 (917)
Q Consensus 686 gtI~vWdl~~~~~~~~~~~~~~~~~--~h~~~V~~l~~sp-dg~~Lasgs~-----------------dG~I~iwDl~~~ 745 (917)
+.|..+|..++.. ....... ........+++.+ +|++.++-.. +|.|..+|..++
T Consensus 101 ~~i~~~d~~~g~~-----~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~ 175 (322)
T 2fp8_A 101 YHLSVVGSEGGHA-----TQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTK 175 (322)
T ss_dssp TEEEEECTTCEEC-----EEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTT
T ss_pred CCEEEEeCCCCEE-----EEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCC
Confidence 6688888654310 0111000 1123467899999 8987666432 377999998877
Q ss_pred eeeEEecCCCCCCeEEEEEecCCCEEEEE-eCCCeEEEEECCCC---eEEEEeecCCceEEEEEeCCCEEEEEeC-----
Q psy3053 746 LMTQQLSDDINASVNGVLFSEDGCRVLSC-GNNCMLNVYDLTTG---MQVCNKVFEEKLLCLSWAGEEKVILGGA----- 816 (917)
Q Consensus 746 ~~~~~l~~~h~~~V~~v~fspdg~~L~s~-s~Dg~I~iwDl~tg---~~i~~~~~~~~i~~l~~s~~~~lv~gs~----- 816 (917)
+...... .......++++|+|+.|+++ ...+.|..+++... .........+ ...+++++++.+.++..
T Consensus 176 ~~~~~~~--~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~~G~l~va~~~~~~~ 252 (322)
T 2fp8_A 176 ETTLLLK--ELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNADGHFWVSSSEELDG 252 (322)
T ss_dssp EEEEEEE--EESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEECTTSCEEEEEEEETTS
T ss_pred EEEEecc--CCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeEECCCCCEEEEecCcccc
Confidence 6443322 12345679999999876665 45688999998742 2111112334 77889998887766654
Q ss_pred ------CCeEEEEECCCCEEEEEEecCC----CceEEEee-cCCEEEEEeCCCeEEEEECc
Q psy3053 817 ------LGMVYLVDLIQVQLLKQVRAHK----DAVLSLHF-DNCTMLVGCWDSCVVIYDVE 866 (917)
Q Consensus 817 ------dG~I~vwdl~~~~~i~~l~~h~----~~V~sis~-dg~~Lasgs~DG~I~Iwdl~ 866 (917)
.+.|..+|. .++.+..+.... ..++++.. ++.+.++...++.|..+++.
T Consensus 253 ~~~~~~~~~v~~~d~-~G~~~~~~~~~~g~~~~~~~~~~~~~g~L~v~~~~~~~i~~~~~~ 312 (322)
T 2fp8_A 253 NMHGRVDPKGIKFDE-FGNILEVIPLPPPFAGEHFEQIQEHDGLLYIGTLFHGSVGILVYD 312 (322)
T ss_dssp STTSCEEEEEEEECT-TSCEEEEEECCTTTTTSCCCEEEEETTEEEEECSSCSEEEEEEC-
T ss_pred cccCCCccEEEEECC-CCCEEEEEECCCCCccccceEEEEeCCEEEEeecCCCceEEEecc
Confidence 367888887 477777665432 33555544 44444444467788888875
No 257
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.48 E-value=1.8e-05 Score=83.16 Aligned_cols=187 Identities=12% Similarity=0.042 Sum_probs=133.0
Q ss_pred eeccCCCc--eEEEEEeCCCCEEEEEECCCeEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEEeCCCeEEEEEC
Q psy3053 708 SQLDLDNR--IKCLAISKDNNQLAVGTEAGELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCGNNCMLNVYDL 785 (917)
Q Consensus 708 ~~~~h~~~--V~~l~~spdg~~Lasgs~dG~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl 785 (917)
....|+.. ...+.++ ++.+.++.+.+|.|+.+|+.+++.+..+ -....-...+++.. ++..++...++.+.+||.
T Consensus 47 ~~~phd~~~ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~g-~~Ly~ltw~~~~v~V~D~ 123 (268)
T 3nok_A 47 REYPHATNAFTQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME-RLGNIFAEGLASDG-ERLYQLTWTEGLLFTWSG 123 (268)
T ss_dssp EEEECCTTCCEEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE-ECTTCCEEEEEECS-SCEEEEESSSCEEEEEET
T ss_pred EEEcCCCccccceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE-CCCCcceeEEEEeC-CEEEEEEccCCEEEEEEC
Confidence 33445443 4788887 4567777788899999999999988877 23222223354432 234444456889999999
Q ss_pred CCCeEEEEeecCCceEEEEEeCCCEEEEEeCCCeEEEEECCCCEEEEEEec--CCC---ceEEEee-cCCEEEEEeCCCe
Q psy3053 786 TTGMQVCNKVFEEKLLCLSWAGEEKVILGGALGMVYLVDLIQVQLLKQVRA--HKD---AVLSLHF-DNCTMLVGCWDSC 859 (917)
Q Consensus 786 ~tg~~i~~~~~~~~i~~l~~s~~~~lv~gs~dG~I~vwdl~~~~~i~~l~~--h~~---~V~sis~-dg~~Lasgs~DG~ 859 (917)
.+.+.+.++.....-..+++++. .++++..++.|.++|..+.+.+.++.. +.. .+..+.+ +|+..+....++.
T Consensus 124 ~Tl~~~~ti~~~~eGwGLt~Dg~-~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~dG~lyanvw~s~~ 202 (268)
T 3nok_A 124 MPPQRERTTRYSGEGWGLCYWNG-KLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECANGVIYANIWHSSD 202 (268)
T ss_dssp TTTEEEEEEECSSCCCCEEEETT-EEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEETTEEEEEETTCSE
T ss_pred CcCcEEEEEeCCCceeEEecCCC-EEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEeCCEEEEEECCCCe
Confidence 99999999887766567777765 777777799999999999998888764 222 2344444 6654444446789
Q ss_pred EEEEECcCCeEEEEecCC-------------CCCEEEEEEcCCCCEEEEEeC
Q psy3053 860 VVIYDVECGRIVTELAGH-------------EDAISCVAWDEKRKRLISGNL 898 (917)
Q Consensus 860 I~Iwdl~tg~~l~~l~~h-------------~~~V~slafSpdg~~LaSgs~ 898 (917)
|.+.|.++|+.+..+... .+..+.||++|+++.|+..|.
T Consensus 203 I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK 254 (268)
T 3nok_A 203 VLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGK 254 (268)
T ss_dssp EEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEET
T ss_pred EEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCC
Confidence 999999999998887532 135689999998776666554
No 258
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.48 E-value=7.1e-05 Score=88.87 Aligned_cols=241 Identities=16% Similarity=0.083 Sum_probs=153.2
Q ss_pred CcEEEEEecCCceEEEeccCCceeeeeecccc----ceE-EEEEeCC---CC-EEEEEec------ccEEEEEEeccCee
Q psy3053 592 GISVASVGRDAMLKIHSLKTGRQERSAVLSSM----TLS-SLCILPD---NC-TMLVGCW------DSCVVIYDVECGRI 656 (917)
Q Consensus 592 g~~Lasgs~Dg~I~IWd~~t~~~~~~~~~~~~----~V~-sl~~spd---~~-~Lasgs~------Dg~I~Iwdl~tg~~ 656 (917)
+..++.++.|+.|..+|..+|+.+........ .+. +..+..+ ++ .+++++. +|.|+.+|..+|+.
T Consensus 117 ~~~v~~~t~dg~l~AlD~~TG~~~W~~~~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~ 196 (582)
T 1flg_A 117 GDKVFFGTLDASVVALNKNTGKVVWKKKFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEE 196 (582)
T ss_dssp TTEEEEEETTTEEEEEESSSCCEEEEEECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCE
T ss_pred CCEEEEEeCCCEEEEEECCCCCEEeeecCCCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCE
Confidence 45688888999999999999998876654321 111 1112222 23 5666653 78999999999998
Q ss_pred eEEeccCCCce-----------------------------------------eEEEecCCCCEEEEEEC-----------
Q psy3053 657 VTELAGHEDAI-----------------------------------------SCVAWDEKRKRLISGSW----------- 684 (917)
Q Consensus 657 i~~l~~H~~~V-----------------------------------------t~l~~spd~~~L~Sgs~----------- 684 (917)
+.........+ ..+++.|+...++.++.
T Consensus 197 ~W~~~~~~~~~~p~~~~~~~~~g~~g~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r~ 276 (582)
T 1flg_A 197 IWMRPFVEGHMGRLNGKDSTVTGDVKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWART 276 (582)
T ss_dssp EEEEESSTTCEEEETTEEEEESSCTTCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGS
T ss_pred EeecCCCccccccccCcccccccccccccCCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCcccc
Confidence 77654211000 12456666677776663
Q ss_pred ---------C----CeEEEEeCCCCCCCccCCcceeeeccCC-------CceEEEEEe-CCCC---EEEEEECCCeEEEE
Q psy3053 685 ---------D----CTVRVWNTGASWSHMKPSKSLVSQLDLD-------NRIKCLAIS-KDNN---QLAVGTEAGELIIW 740 (917)
Q Consensus 685 ---------D----gtI~vWdl~~~~~~~~~~~~~~~~~~h~-------~~V~~l~~s-pdg~---~Lasgs~dG~I~iw 740 (917)
| +.|..+|..++...... ....|+ ....-+... .+|+ .++.++.+|.++++
T Consensus 277 ~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~-----q~~~~d~wd~~~~~~p~l~~~~~~~G~~~~~v~~~~~~G~l~~l 351 (582)
T 1flg_A 277 AKGGNPHDYDSLYTSGQVGVDPSSGEVKWFY-----QHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYVV 351 (582)
T ss_dssp CTTSCSTTCCCTTCSEEEEECTTTCCEEEEE-----ESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEEEE
T ss_pred cCCCcccccCCcccceEEEEeCCCCCEEEEE-----eCCCCCcccccCCCCcEEEeeecCCCCEEEEEEEECCCceEEEE
Confidence 2 58999998887321110 001111 111122222 4674 78889999999999
Q ss_pred ECCCCeeeEEecCCCC------------CC--------------------------------eEEEEEecCCCEEEEEe-
Q psy3053 741 SLENHLMTQQLSDDIN------------AS--------------------------------VNGVLFSEDGCRVLSCG- 775 (917)
Q Consensus 741 Dl~~~~~~~~l~~~h~------------~~--------------------------------V~~v~fspdg~~L~s~s- 775 (917)
|..+|+.+........ .+ ...++++|+...+++..
T Consensus 352 D~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~ 431 (582)
T 1flg_A 352 DRSNGKLQNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPAN 431 (582)
T ss_dssp ETTTCCEEEEEESSSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEE
T ss_pred ECCCCCEecccccccCccccccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEech
Confidence 9999998876542210 00 01346676655555432
Q ss_pred --------------------------------CCCeEEEEECCCCeEEEEeecCCceEE-EEEeCCCEEEEEeCCCeEEE
Q psy3053 776 --------------------------------NNCMLNVYDLTTGMQVCNKVFEEKLLC-LSWAGEEKVILGGALGMVYL 822 (917)
Q Consensus 776 --------------------------------~Dg~I~iwDl~tg~~i~~~~~~~~i~~-l~~s~~~~lv~gs~dG~I~v 822 (917)
.+|.|..||+.+|+.+........... ......+.+++|+.||.++.
T Consensus 432 ~~~~~~~~~~~~~~~g~~~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagglvf~g~~dg~l~A 511 (582)
T 1flg_A 432 HWKEDYWTEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEHLPLWAGVLATAGNLVFTGTGDGYFKA 511 (582)
T ss_dssp CEEEEEEECCCCCCTTSCCCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEESSCCCSCCEEETTTEEEEECTTSEEEE
T ss_pred hcceeeecccccccCCCceeccceeecCCCCCCcceEEEEECCCCCEEEEecCCCCCcccceEeCCCEEEEECCCCcEEE
Confidence 257899999999998877665443321 11224568889999999999
Q ss_pred EECCCCEEEEEEecC
Q psy3053 823 VDLIQVQLLKQVRAH 837 (917)
Q Consensus 823 wdl~~~~~i~~l~~h 837 (917)
+|..+|+.+.++...
T Consensus 512 ~D~~tG~~lW~~~~~ 526 (582)
T 1flg_A 512 FDAKSGKELWKFQTG 526 (582)
T ss_dssp EETTTCCEEEEEECS
T ss_pred EECCCCCEEEEecCC
Confidence 999999999888754
No 259
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.47 E-value=2.2e-05 Score=85.57 Aligned_cols=232 Identities=11% Similarity=-0.018 Sum_probs=143.1
Q ss_pred ceEEEEEeCCCcEEEEEecCCceEEEeccCCceeeeeec--------------------cccceEEEEEeC-CCCEEEEE
Q psy3053 582 AITAVAICGEGISVASVGRDAMLKIHSLKTGRQERSAVL--------------------SSMTLSSLCILP-DNCTMLVG 640 (917)
Q Consensus 582 ~Vtsv~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~~~~--------------------~~~~V~sl~~sp-d~~~Lasg 640 (917)
...+++++++|+.++++..++.|..|+..++.... +.. .......+++.+ +++ |+++
T Consensus 20 ~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~-l~v~ 97 (322)
T 2fp8_A 20 APNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVD-FAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQ-LYIV 97 (322)
T ss_dssp CCCCEECCTTCSSEEEECTTSEEEEECCTTTCEEE-EEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTE-EEEE
T ss_pred CceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEE-EecccccccccccccccchhccccCCCCceEEEcCCCCc-EEEE
Confidence 45678899999888888889999999877654321 110 112467888997 554 5555
Q ss_pred ecccEEEEEEeccCeeeEEe---cc-CCCceeEEEecC-CCCEEEEEEC-----------------CCeEEEEeCCCCCC
Q psy3053 641 CWDSCVVIYDVECGRIVTEL---AG-HEDAISCVAWDE-KRKRLISGSW-----------------DCTVRVWNTGASWS 698 (917)
Q Consensus 641 s~Dg~I~Iwdl~tg~~i~~l---~~-H~~~Vt~l~~sp-d~~~L~Sgs~-----------------DgtI~vWdl~~~~~ 698 (917)
...+.+..+|..+++..... .+ .......+++.+ +|+..++-.. ++.|..||..++.
T Consensus 98 d~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~- 176 (322)
T 2fp8_A 98 DCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKE- 176 (322)
T ss_dssp ETTTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTE-
T ss_pred ECCCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCE-
Confidence 55555888887655432111 11 113467899999 8877666432 3678888875541
Q ss_pred CccCCcceeeeccCCCceEEEEEeCCCCEEEEE-ECCCeEEEEECCCCe--eeEEecCCCCCCeEEEEEecCCCEEEEEe
Q psy3053 699 HMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVG-TEAGELIIWSLENHL--MTQQLSDDINASVNGVLFSEDGCRVLSCG 775 (917)
Q Consensus 699 ~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasg-s~dG~I~iwDl~~~~--~~~~l~~~h~~~V~~v~fspdg~~L~s~s 775 (917)
.......-.....++++++++.+.++ +..+.|..+++.... ....+.. ..+ ...+++.++|++.++..
T Consensus 177 -------~~~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~-~~g-P~gi~~d~~G~l~va~~ 247 (322)
T 2fp8_A 177 -------TTLLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVK-IPN-PGNIKRNADGHFWVSSS 247 (322)
T ss_dssp -------EEEEEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEE-CSS-EEEEEECTTSCEEEEEE
T ss_pred -------EEEeccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEe-CCC-CCCeEECCCCCEEEEec
Confidence 11111112345679999999866655 556899999987521 1111111 123 78899999998766654
Q ss_pred C----------CCeEEEEECCCCeEEEEeecC-----CceEEEEEeCCCEEEEEe-CCCeEEEEECCC
Q psy3053 776 N----------NCMLNVYDLTTGMQVCNKVFE-----EKLLCLSWAGEEKVILGG-ALGMVYLVDLIQ 827 (917)
Q Consensus 776 ~----------Dg~I~iwDl~tg~~i~~~~~~-----~~i~~l~~s~~~~lv~gs-~dG~I~vwdl~~ 827 (917)
. .+.|..+|.. ++.+..+... ..+.+++... +.+++++ ..+.|..+++..
T Consensus 248 ~~~~~~~~~~~~~~v~~~d~~-G~~~~~~~~~~g~~~~~~~~~~~~~-g~L~v~~~~~~~i~~~~~~~ 313 (322)
T 2fp8_A 248 EELDGNMHGRVDPKGIKFDEF-GNILEVIPLPPPFAGEHFEQIQEHD-GLLYIGTLFHGSVGILVYDK 313 (322)
T ss_dssp EETTSSTTSCEEEEEEEECTT-SCEEEEEECCTTTTTSCCCEEEEET-TEEEEECSSCSEEEEEEC--
T ss_pred CcccccccCCCccEEEEECCC-CCEEEEEECCCCCccccceEEEEeC-CEEEEeecCCCceEEEeccc
Confidence 4 4678888874 6666555543 2355555544 4555544 567888888753
No 260
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.45 E-value=0.00021 Score=77.21 Aligned_cols=225 Identities=8% Similarity=-0.037 Sum_probs=138.3
Q ss_pred CceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEEEECC--CeEEEEEC
Q psy3053 665 DAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEA--GELIIWSL 742 (917)
Q Consensus 665 ~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~d--G~I~iwDl 742 (917)
.....++|+++++.+++-..++.|..||.... ..........+.+++++++|+++++.... ..|..+|.
T Consensus 32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~---------~~~~~~~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~ 102 (306)
T 2p4o_A 32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGN---------QQIHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVK 102 (306)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTTCC---------EEEEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEEC
T ss_pred CCcceEEECCCCCEEEEeCCCCeEEEECCCCc---------eEEEEeCCCCceeEEEcCCCcEEEEeccCCcceEEEEcC
Confidence 45778999999887777667899999987643 11122234568899999999976665433 24777887
Q ss_pred CCCeeeEEecCCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeE-EEEe-------ec-C--CceEEEEEeCCCEE
Q psy3053 743 ENHLMTQQLSDDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQ-VCNK-------VF-E--EKLLCLSWAGEEKV 811 (917)
Q Consensus 743 ~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~tg~~-i~~~-------~~-~--~~i~~l~~s~~~~l 811 (917)
.+++...............++..+++..+++...++.|..+|..++.. +... .. . .....++.++...+
T Consensus 103 ~~g~~~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngis~dg~~ly 182 (306)
T 2p4o_A 103 SDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFGNFLY 182 (306)
T ss_dssp TTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEETTEEE
T ss_pred CCCeEEEEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCcCcCCCEEE
Confidence 777654333212223345566555554455444688999999876532 2110 00 1 13445544443244
Q ss_pred EEEeCCCeEEEEECCC-CEE--EEEEe-cCCCceEEEeecCCEEEEEeCCCeEEEEECcCCeEEE--EecCCCCCEEEEE
Q psy3053 812 ILGGALGMVYLVDLIQ-VQL--LKQVR-AHKDAVLSLHFDNCTMLVGCWDSCVVIYDVECGRIVT--ELAGHEDAISCVA 885 (917)
Q Consensus 812 v~gs~dG~I~vwdl~~-~~~--i~~l~-~h~~~V~sis~dg~~Lasgs~DG~I~Iwdl~tg~~l~--~l~~h~~~V~sla 885 (917)
++-...+.|..+++.. ++. ...+. .....=.+++++|++.++....+.|.+++.. ++... .+.......++++
T Consensus 183 v~d~~~~~I~~~~~~~~g~~~~~~~~~~~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~~~~~~~~~~~p~~~a 261 (306)
T 2p4o_A 183 VSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQAEQGVIGSTAVA 261 (306)
T ss_dssp EEETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECGGGTCTTEEEEE
T ss_pred EEeCCCCEEEEEEeCCCCCCCccEEEeccCCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEEEEeecccccCCceEEE
Confidence 5556678999999864 321 11111 1112224557788877776778899999975 66533 3333335689999
Q ss_pred Ec---CCCCEEEEEeCC
Q psy3053 886 WD---EKRKRLISGNLV 899 (917)
Q Consensus 886 fS---pdg~~LaSgs~D 899 (917)
|. |+++.|+.++..
T Consensus 262 ~~g~~~d~~~LyVt~~~ 278 (306)
T 2p4o_A 262 FGQTEGDCTAIYVVTNG 278 (306)
T ss_dssp ECCSTTTTTEEEEEECT
T ss_pred EecccCCCCEEEEECCC
Confidence 98 898887776644
No 261
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.41 E-value=2.7e-05 Score=81.79 Aligned_cols=184 Identities=11% Similarity=0.115 Sum_probs=125.9
Q ss_pred eEEEEEeCCCcEEEEEecCC--ceEEEeccCCceeeeeeccccceEEEEEeCCCCEEEEEec-ccEEEEEEeccCeeeEE
Q psy3053 583 ITAVAICGEGISVASVGRDA--MLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTMLVGCW-DSCVVIYDVECGRIVTE 659 (917)
Q Consensus 583 Vtsv~fSpdg~~Lasgs~Dg--~I~IWd~~t~~~~~~~~~~~~~V~sl~~spd~~~Lasgs~-Dg~I~Iwdl~tg~~i~~ 659 (917)
...+.|+ ++.+..+++.+| .|+++|+++++.++.+...... ....+.+++..|....+ ++.+.++|.++.+.+.+
T Consensus 45 tqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~-FgeGit~~g~~ly~ltw~~~~v~v~D~~t~~~~~t 122 (262)
T 3nol_A 45 TEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRY-FGEGISDWKDKIVGLTWKNGLGFVWNIRNLRQVRS 122 (262)
T ss_dssp EEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTC-CEEEEEEETTEEEEEESSSSEEEEEETTTCCEEEE
T ss_pred cceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCcc-ceeEEEEeCCEEEEEEeeCCEEEEEECccCcEEEE
Confidence 4788998 677777888776 8999999999998888765432 22223334556666554 88999999999999988
Q ss_pred eccCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCC---CceEEEEEeCCCCEEEEEECCCe
Q psy3053 660 LAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLD---NRIKCLAISKDNNQLAVGTEAGE 736 (917)
Q Consensus 660 l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~---~~V~~l~~spdg~~Lasgs~dG~ 736 (917)
+...... ..++ +++..|+.+..++.|.++|..+.... ..+ ...... ..+..+.+. +|...+....+..
T Consensus 123 i~~~~eG-~glt--~dg~~L~~SdGs~~i~~iDp~T~~v~----~~I-~V~~~g~~~~~lNELe~~-~G~lyan~w~~~~ 193 (262)
T 3nol_A 123 FNYDGEG-WGLT--HNDQYLIMSDGTPVLRFLDPESLTPV----RTI-TVTAHGEELPELNELEWV-DGEIFANVWQTNK 193 (262)
T ss_dssp EECSSCC-CCEE--ECSSCEEECCSSSEEEEECTTTCSEE----EEE-ECEETTEECCCEEEEEEE-TTEEEEEETTSSE
T ss_pred EECCCCc-eEEe--cCCCEEEEECCCCeEEEEcCCCCeEE----EEE-EeccCCccccccceeEEE-CCEEEEEEccCCe
Confidence 8753322 2333 56777777666788999998775210 010 111111 234456666 6765555556889
Q ss_pred EEEEECCCCeeeEEecCC-----------CCCCeEEEEEecCCCEEEEEeCC
Q psy3053 737 LIIWSLENHLMTQQLSDD-----------INASVNGVLFSEDGCRVLSCGNN 777 (917)
Q Consensus 737 I~iwDl~~~~~~~~l~~~-----------h~~~V~~v~fspdg~~L~s~s~D 777 (917)
|.+.|..+++.+..+... ...-.+.+|++|+++.|.+++..
T Consensus 194 I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~ 245 (262)
T 3nol_A 194 IVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKL 245 (262)
T ss_dssp EEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEETT
T ss_pred EEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECCC
Confidence 999999999998887621 12356899999998888887753
No 262
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.34 E-value=2.6e-05 Score=81.98 Aligned_cols=182 Identities=9% Similarity=0.014 Sum_probs=123.8
Q ss_pred eEEEEEeCCCcEEEEEecCCceEEEeccCCceeeeeeccccceEEEEEeCCCCEEEEEe-cccEEEEEEeccCeeeEEec
Q psy3053 583 ITAVAICGEGISVASVGRDAMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTMLVGC-WDSCVVIYDVECGRIVTELA 661 (917)
Q Consensus 583 Vtsv~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~~~~~~~~V~sl~~spd~~~Lasgs-~Dg~I~Iwdl~tg~~i~~l~ 661 (917)
...+.|+ ++.+..+++.+|.|+++|+++++.++.+ ... .....-..++++.|.... .++.+.+||.++.+.+.++.
T Consensus 57 tqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~-~~FgeGit~~g~~Ly~ltw~~~~v~V~D~~Tl~~~~ti~ 133 (268)
T 3nok_A 57 TQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME-RLG-NIFAEGLASDGERLYQLTWTEGLLFTWSGMPPQRERTTR 133 (268)
T ss_dssp EEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE-ECT-TCCEEEEEECSSCEEEEESSSCEEEEEETTTTEEEEEEE
T ss_pred cceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE-CCC-CcceeEEEEeCCEEEEEEccCCEEEEEECCcCcEEEEEe
Confidence 4678887 4677778888999999999999998887 443 222222333444554444 58899999999999999887
Q ss_pred cCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCC---CceEEEEEeCCCCEEEEEECCCeEE
Q psy3053 662 GHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLD---NRIKCLAISKDNNQLAVGTEAGELI 738 (917)
Q Consensus 662 ~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~---~~V~~l~~spdg~~Lasgs~dG~I~ 738 (917)
.-.. -..++ ++++.|+.+..++.|.++|..+.... .. ....... ..+..+.|. +|...+....+..|.
T Consensus 134 ~~~e-GwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~----~~-I~V~~~g~~v~~lNeLe~~-dG~lyanvw~s~~I~ 204 (268)
T 3nok_A 134 YSGE-GWGLC--YWNGKLVRSDGGTMLTFHEPDGFALV----GA-VQVKLRGQPVELINELECA-NGVIYANIWHSSDVL 204 (268)
T ss_dssp CSSC-CCCEE--EETTEEEEECSSSEEEEECTTTCCEE----EE-EECEETTEECCCEEEEEEE-TTEEEEEETTCSEEE
T ss_pred CCCc-eeEEe--cCCCEEEEECCCCEEEEEcCCCCeEE----EE-EEeCCCCcccccccccEEe-CCEEEEEECCCCeEE
Confidence 5322 23444 46778887777899999998775210 00 1111111 234566766 676555555688999
Q ss_pred EEECCCCeeeEEecCC------------CCCCeEEEEEecCCCEEEEEeC
Q psy3053 739 IWSLENHLMTQQLSDD------------INASVNGVLFSEDGCRVLSCGN 776 (917)
Q Consensus 739 iwDl~~~~~~~~l~~~------------h~~~V~~v~fspdg~~L~s~s~ 776 (917)
+.|..+++.+..+.-. ...-.+.||++|+++.|++++.
T Consensus 205 vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK 254 (268)
T 3nok_A 205 EIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGK 254 (268)
T ss_dssp EECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEET
T ss_pred EEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCC
Confidence 9999999988877521 1245689999998777776664
No 263
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.33 E-value=6.9e-05 Score=79.37 Aligned_cols=169 Identities=11% Similarity=0.005 Sum_probs=122.1
Q ss_pred eeeEEecCCCCCCeEEEEEecCCCEEEEEeC--CCeEEEEECCCCeEEEEeecCCc--eEEEEEeCCCEEEEEeCCCeEE
Q psy3053 746 LMTQQLSDDINASVNGVLFSEDGCRVLSCGN--NCMLNVYDLTTGMQVCNKVFEEK--LLCLSWAGEEKVILGGALGMVY 821 (917)
Q Consensus 746 ~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~--Dg~I~iwDl~tg~~i~~~~~~~~--i~~l~~s~~~~lv~gs~dG~I~ 821 (917)
+.+.++..+.......++|++++...++.+. ++.|+++|+.+++.+........ ...++++++..+++.-.++.+.
T Consensus 10 ~vv~~~p~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~g~~lyv~t~~~~~v~ 89 (266)
T 2iwa_A 10 EVLNEFPHDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLLNEKLYQVVWLKNIGF 89 (266)
T ss_dssp EEEEEEECCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEETTCSEEE
T ss_pred eEEEEEECCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEeCCEEEEEEecCCEEE
Confidence 4555564222244689999998754444443 57999999999999988775543 3456777764455666789999
Q ss_pred EEECCCCEEEEEEecCCCceEEEeecCCEEEEEeCCCeEEEEECcCCeEEEEecCCC-----CCEEEEEEcCCCCEEEEE
Q psy3053 822 LVDLIQVQLLKQVRAHKDAVLSLHFDNCTMLVGCWDSCVVIYDVECGRIVTELAGHE-----DAISCVAWDEKRKRLISG 896 (917)
Q Consensus 822 vwdl~~~~~i~~l~~h~~~V~sis~dg~~Lasgs~DG~I~Iwdl~tg~~l~~l~~h~-----~~V~slafSpdg~~LaSg 896 (917)
++|..+++.+.++......-..+++||+.++++..++.|.++|..+.+.+..+.-.. ..+..+.|. +|...+..
T Consensus 90 viD~~t~~v~~~i~~g~~~g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~lyvn~ 168 (266)
T 2iwa_A 90 IYDRRTLSNIKNFTHQMKDGWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEVWANI 168 (266)
T ss_dssp EEETTTTEEEEEEECCSSSCCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEE
T ss_pred EEECCCCcEEEEEECCCCCeEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCEEEEec
Confidence 999999999999864322335578899888888788999999999999888775322 236788888 77555555
Q ss_pred eCCCcEEEEecCcc-eEEEE
Q psy3053 897 NLVGAPKLYATEFY-LLYVL 915 (917)
Q Consensus 897 s~DG~V~IWdl~~~-ll~~L 915 (917)
..++.|.+-|..+. .+..+
T Consensus 169 ~~~~~V~vID~~tg~V~~~I 188 (266)
T 2iwa_A 169 WQTDCIARISAKDGTLLGWI 188 (266)
T ss_dssp TTSSEEEEEETTTCCEEEEE
T ss_pred CCCCeEEEEECCCCcEEEEE
Confidence 56789999999754 44544
No 264
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.21 E-value=0.00015 Score=88.79 Aligned_cols=246 Identities=11% Similarity=0.001 Sum_probs=134.8
Q ss_pred cCCc-ceEEEEEe-CCCcEEEEEec-CC----ceEEEeccCC-ceeeeeeccccceEEEEEeCCCCEEEEEecc-----c
Q psy3053 578 SHKE-AITAVAIC-GEGISVASVGR-DA----MLKIHSLKTG-RQERSAVLSSMTLSSLCILPDNCTMLVGCWD-----S 644 (917)
Q Consensus 578 ~H~~-~Vtsv~fS-pdg~~Lasgs~-Dg----~I~IWd~~t~-~~~~~~~~~~~~V~sl~~spd~~~Lasgs~D-----g 644 (917)
+|.- .+.+.+|| |||++||.+.. +| .|.++|+.++ +.+... . .....+++|+||++.|+....| .
T Consensus 170 ~~~~~~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~-~-~~~~~~~~WspDg~~l~y~~~d~~~~~~ 247 (751)
T 2xe4_A 170 GKAFCDVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADK-V-SGTNGEIVWGPDHTSLFYVTKDETLREN 247 (751)
T ss_dssp TCSCCEEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCC-E-EEECSCCEECSSTTEEEEEEECTTCCEE
T ss_pred CCCeEEEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcc-c-cCceeeEEEecCCCEEEEEEECCCCCCC
Confidence 3443 67889999 99998875543 33 4999999988 633211 1 1124578899999988887765 3
Q ss_pred EEEEEEeccCee--eEEec-cCCCceeEEEecCCCCEEEEEEC---CCeEEEEeCCCCCCCccCCcceeee-ccCCCceE
Q psy3053 645 CVVIYDVECGRI--VTELA-GHEDAISCVAWDEKRKRLISGSW---DCTVRVWNTGASWSHMKPSKSLVSQ-LDLDNRIK 717 (917)
Q Consensus 645 ~I~Iwdl~tg~~--i~~l~-~H~~~Vt~l~~spd~~~L~Sgs~---DgtI~vWdl~~~~~~~~~~~~~~~~-~~h~~~V~ 717 (917)
.|+++++.++.. ...+. .+......+.|+|||++|+..+. ...|.++|+.++.... ..... ........
T Consensus 248 ~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~----~~~~l~~~~~~~~~ 323 (751)
T 2xe4_A 248 KVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHN----TLEIVRPREKGVRY 323 (751)
T ss_dssp EEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCC----CEEESSCCCTTCCE
T ss_pred EEEEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCc----eeEEeecCCCCceE
Confidence 688888877642 22222 23345678899999998887663 3467788886541110 00111 12234445
Q ss_pred EEEEeCCCCEEEEEECC----CeEEEEECCCC-eeeE-EecCCCCCCeEEEEEecCCCEEEEEeCCCe--EEEEEC----
Q psy3053 718 CLAISKDNNQLAVGTEA----GELIIWSLENH-LMTQ-QLSDDINASVNGVLFSEDGCRVLSCGNNCM--LNVYDL---- 785 (917)
Q Consensus 718 ~l~~spdg~~Lasgs~d----G~I~iwDl~~~-~~~~-~l~~~h~~~V~~v~fspdg~~L~s~s~Dg~--I~iwDl---- 785 (917)
++.|+..+.+++.+..+ ..|..+|+.++ .... .+.......+..+.+. .+..+++...++. |.++++
T Consensus 324 s~~~~~g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~-~~~lv~~~~~~g~~~l~~~dl~~~~ 402 (751)
T 2xe4_A 324 DVQMHGTSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVR-SNYLVVAGRRAGLTRIWTMMADSQD 402 (751)
T ss_dssp EEEEETTTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEEC-SSEEEEEEEETTEEEEEEEECCTTT
T ss_pred EEeeeeCCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEE-CCEEEEEEEeCCEEEEEEEeccccc
Confidence 55555444444444433 36777887653 2222 2221112234455544 2334455566665 555665
Q ss_pred ---CCCeEEEEeecCCc--eEEEEE------eCCCEEEEEeCC---CeEEEEECCCCEE
Q psy3053 786 ---TTGMQVCNKVFEEK--LLCLSW------AGEEKVILGGAL---GMVYLVDLIQVQL 830 (917)
Q Consensus 786 ---~tg~~i~~~~~~~~--i~~l~~------s~~~~lv~gs~d---G~I~vwdl~~~~~ 830 (917)
.++.....+..... +..+.+ +.+..+++.++. +.++.+|+.+++.
T Consensus 403 ~~~~~g~~~~~l~l~~~~~~~~~~~~~~~~~~~~~l~~~~ss~~~P~~~~~~d~~~~~~ 461 (751)
T 2xe4_A 403 GVFKAGTGLREVVMEEPIFTVHLVESQMLEYEEPTFRMEYSSLATPNTWFDVSPQDHSR 461 (751)
T ss_dssp SCCCTTTCCEECCCCCSSCEEEECGGGCCCTTCSCEEEEEEETTEEEEEEEECTTTCCE
T ss_pred ccccCCccceEECCCCceeEEEeccCcccCCCCCEEEEEEeCCCCCCEEEEEECCCCcE
Confidence 34431233333333 333322 223233333332 5678888877653
No 265
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.21 E-value=2.8e-05 Score=93.83 Aligned_cols=266 Identities=11% Similarity=0.038 Sum_probs=152.3
Q ss_pred EEEEeC-CCCEEEEEeccc-----------EEEEEEeccCeee--EEec-cCCCceeEEEecCCCCEEEEEEC-CCeEEE
Q psy3053 627 SLCILP-DNCTMLVGCWDS-----------CVVIYDVECGRIV--TELA-GHEDAISCVAWDEKRKRLISGSW-DCTVRV 690 (917)
Q Consensus 627 sl~~sp-d~~~Lasgs~Dg-----------~I~Iwdl~tg~~i--~~l~-~H~~~Vt~l~~spd~~~L~Sgs~-DgtI~v 690 (917)
++++.+ ++++++.|+.++ .+.+||..+++.. ..+. .+.....++++..+++.++.|+. +..+.+
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~ 269 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSL 269 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEE
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEE
Confidence 556677 888888887543 6889999887532 2222 23334456777889999999984 458999
Q ss_pred EeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEEEE-CC-----CeEEEEECCCCeeeEEec---CCCCCCeEE
Q psy3053 691 WNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGT-EA-----GELIIWSLENHLMTQQLS---DDINASVNG 761 (917)
Q Consensus 691 Wdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs-~d-----G~I~iwDl~~~~~~~~l~---~~h~~~V~~ 761 (917)
||..+.. .. ... .......-.+++..+++++++.|+ .+ ..+.+||..+.+-...-. ......-..
T Consensus 270 yd~~t~~--W~---~~~-~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~~ 343 (656)
T 1k3i_A 270 YDSSSDS--WI---PGP-DMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQ 343 (656)
T ss_dssp EEGGGTE--EE---ECC-CCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTT
T ss_pred ecCcCCc--ee---ECC-CCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcceeCCCcccccccccccc
Confidence 9987652 00 000 111111223455667899999998 34 468999998876443210 000000000
Q ss_pred EEEecCCCEEEEEeCC---------CeEEEEECCCCeEEEEeecC----------CceEEEEEe--CCCEEEEEeCCC--
Q psy3053 762 VLFSEDGCRVLSCGNN---------CMLNVYDLTTGMQVCNKVFE----------EKLLCLSWA--GEEKVILGGALG-- 818 (917)
Q Consensus 762 v~fspdg~~L~s~s~D---------g~I~iwDl~tg~~i~~~~~~----------~~i~~l~~s--~~~~lv~gs~dG-- 818 (917)
..+..++...+.++.+ ..+..||..+.......... ..-.++.+. .+..+++|+.++
T Consensus 344 ~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~ 423 (656)
T 1k3i_A 344 GLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQ 423 (656)
T ss_dssp GGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSS
T ss_pred ceeecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCC
Confidence 1122345555555444 35778888776543322111 112333332 343556666432
Q ss_pred ---------eEEEEECCCCEEEEEE--ecCCC--ceE-EEeecCCEEEEEeCC-----------CeEEEEECcCCeEEEE
Q psy3053 819 ---------MVYLVDLIQVQLLKQV--RAHKD--AVL-SLHFDNCTMLVGCWD-----------SCVVIYDVECGRIVTE 873 (917)
Q Consensus 819 ---------~I~vwdl~~~~~i~~l--~~h~~--~V~-sis~dg~~Lasgs~D-----------G~I~Iwdl~tg~~l~~ 873 (917)
.+.+||..+....... ..... ... ++.+++++++.|+.+ ..+.+||..+++....
T Consensus 424 ~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~W~~~ 503 (656)
T 1k3i_A 424 DSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQ 503 (656)
T ss_dssp SSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEEC
T ss_pred CCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEcCCCCceeec
Confidence 6888888776654432 11221 223 335699999999864 4689999988765432
Q ss_pred e--cCCCCCEEEEEEcCCCCEEEEEeC
Q psy3053 874 L--AGHEDAISCVAWDEKRKRLISGNL 898 (917)
Q Consensus 874 l--~~h~~~V~slafSpdg~~LaSgs~ 898 (917)
- ........+..+.|+|+.++.||.
T Consensus 504 ~~~~~~R~~hs~a~ll~dg~v~v~GG~ 530 (656)
T 1k3i_A 504 NPNSIVRVYHSISLLLPDGRVFNGGGG 530 (656)
T ss_dssp CCCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred CCCCCccccccHhhcCCCcEEEecCCC
Confidence 1 111122344566799999999985
No 266
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=98.19 E-value=0.0023 Score=69.87 Aligned_cols=268 Identities=12% Similarity=0.053 Sum_probs=149.3
Q ss_pred CcceEEEEEeCCCcEEEEEecCCceEEEeccCCceeeeee----ccccceEEEEEeCCCCEEEEEecccEEEEEEeccCe
Q psy3053 580 KEAITAVAICGEGISVASVGRDAMLKIHSLKTGRQERSAV----LSSMTLSSLCILPDNCTMLVGCWDSCVVIYDVECGR 655 (917)
Q Consensus 580 ~~~Vtsv~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~~~----~~~~~V~sl~~spd~~~Lasgs~Dg~I~Iwdl~tg~ 655 (917)
...+.+|.+.+++..++ ++.+|.| +...+.|+.=.... .....+.++.+.+ +..++ ++.++.|.. ..+.|+
T Consensus 35 ~~~~~~v~~~~~~~~~~-~G~~g~i-~~s~DgG~tW~~~~~~~~~~~~~~~~i~~~~-~~~~~-~g~~g~i~~-S~DgG~ 109 (327)
T 2xbg_A 35 TATILDMSFIDRHHGWL-VGVNATL-METRDGGQTWEPRTLVLDHSDYRFNSVSFQG-NEGWI-VGEPPIMLH-TTDGGQ 109 (327)
T ss_dssp SSCEEEEEESSSSCEEE-EETTTEE-EEESSTTSSCEECCCCCSCCCCEEEEEEEET-TEEEE-EEETTEEEE-ESSTTS
T ss_pred CCcEEEEEECCCCcEEE-EcCCCeE-EEeCCCCCCCeECCCCCCCCCccEEEEEecC-CeEEE-EECCCeEEE-ECCCCC
Confidence 34688999988777776 4566754 33333343211111 1234678888876 44444 455665433 333344
Q ss_pred eeEEec---cCCCceeEEEecCCCCEEEEEECCCeE-EEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEEE
Q psy3053 656 IVTELA---GHEDAISCVAWDEKRKRLISGSWDCTV-RVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVG 731 (917)
Q Consensus 656 ~i~~l~---~H~~~Vt~l~~spd~~~L~Sgs~DgtI-~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasg 731 (917)
.-.... .+.+.+..+.+.+++..++.+ .+|.| +-.| .+ ... .. ........+..+++.+++.+++++
T Consensus 110 tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~g~v~~S~D--gG-~tW---~~--~~~~~~~~~~~~~~~~~~~~~~~g 180 (327)
T 2xbg_A 110 SWSQIPLDPKLPGSPRLIKALGNGSAEMIT-NVGAIYRTKD--SG-KNW---QA--LVQEAIGVMRNLNRSPSGEYVAVS 180 (327)
T ss_dssp SCEECCCCTTCSSCEEEEEEEETTEEEEEE-TTCCEEEESS--TT-SSE---EE--EECSCCCCEEEEEECTTSCEEEEE
T ss_pred CceECccccCCCCCeEEEEEECCCCEEEEe-CCccEEEEcC--CC-CCC---EE--eecCCCcceEEEEEcCCCcEEEEE
Confidence 322222 234567788877666555544 46644 2222 12 111 11 112344578899999998877766
Q ss_pred ECCCeEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeEEEEeecC-----CceEEEEEe
Q psy3053 732 TEAGELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCNKVFE-----EKLLCLSWA 806 (917)
Q Consensus 732 s~dG~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~tg~~i~~~~~~-----~~i~~l~~s 806 (917)
. +|.+..-+-..+..-..+.......+..+++.+++..+ .++.+|.+.+.+...|+........ ..+.++.+.
T Consensus 181 ~-~G~~~~S~d~gG~tW~~~~~~~~~~~~~~~~~~~g~~~-~~~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~ 258 (327)
T 2xbg_A 181 S-RGSFYSTWEPGQTAWEPHNRTTSRRLHNMGFTPDGRLW-MIVNGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYR 258 (327)
T ss_dssp T-TSSEEEEECTTCSSCEEEECCSSSCEEEEEECTTSCEE-EEETTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEES
T ss_pred C-CCcEEEEeCCCCCceeECCCCCCCccceeEECCCCCEE-EEeCCceEEEecCCCCCeeEeccCCcccCCcceEEEEec
Confidence 4 45444432111222222222455678899999988655 5556788777643334433332222 347888888
Q ss_pred CCCEEEEEeCCCeEEEEECCCCEEEEEEec---CCCceEEEee-cCCEEEEEeCCCeEEEEE
Q psy3053 807 GEEKVILGGALGMVYLVDLIQVQLLKQVRA---HKDAVLSLHF-DNCTMLVGCWDSCVVIYD 864 (917)
Q Consensus 807 ~~~~lv~gs~dG~I~vwdl~~~~~i~~l~~---h~~~V~sis~-dg~~Lasgs~DG~I~Iwd 864 (917)
+++.+++++.+|.+ .+....++.-..+.. ....+.++.+ ++..+++++.+|.|.-++
T Consensus 259 ~~~~~~~~g~~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~~~~~~G~~G~i~~~~ 319 (327)
T 2xbg_A 259 TPNEVWLAGGAGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFSPDQGFILGQKGILLRYV 319 (327)
T ss_dssp SSSCEEEEESTTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEEETTEEEEECSTTEEEEEC
T ss_pred CCCEEEEEeCCCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEECCCceEEEcCCceEEEEc
Confidence 77778877778877 344544543333331 2345566644 456677788889776654
No 267
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.15 E-value=0.00018 Score=88.10 Aligned_cols=239 Identities=9% Similarity=0.014 Sum_probs=137.3
Q ss_pred ceEEEEEe-CCCCEEEEEec-c----cEEEEEEeccC-eeeE-EeccCCCceeEEEecCCCCEEEEEECC-----CeEEE
Q psy3053 624 TLSSLCIL-PDNCTMLVGCW-D----SCVVIYDVECG-RIVT-ELAGHEDAISCVAWDEKRKRLISGSWD-----CTVRV 690 (917)
Q Consensus 624 ~V~sl~~s-pd~~~Lasgs~-D----g~I~Iwdl~tg-~~i~-~l~~H~~~Vt~l~~spd~~~L~Sgs~D-----gtI~v 690 (917)
.+...+|| |||++||.+.. + ..|+++|+.+| +.+. .+. .....++|+||++.|+..+.| ..|.+
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~---~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~ 251 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVS---GTNGEIVWGPDHTSLFYVTKDETLRENKVWR 251 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEE---EECSCCEECSSTTEEEEEEECTTCCEEEEEE
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcccc---CceeeEEEecCCCEEEEEEECCCCCCCEEEE
Confidence 56788999 99998886543 2 35999999998 6321 111 124578999999988877765 25777
Q ss_pred EeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEEEEC---CCeEEEEECCCCe-ee--EEecCCCCCCeEEEEE
Q psy3053 691 WNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTE---AGELIIWSLENHL-MT--QQLSDDINASVNGVLF 764 (917)
Q Consensus 691 Wdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~---dG~I~iwDl~~~~-~~--~~l~~~h~~~V~~v~f 764 (917)
+++.++... ...............+.|+|||+.|+..+. ...|.++|+.++. .. ..+.........++.|
T Consensus 252 ~~lgt~~~~----~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~ 327 (751)
T 2xe4_A 252 HVMGKLQSE----DVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQM 327 (751)
T ss_dssp EETTSCGGG----CEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEEE
T ss_pred EECCCCchh----cEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEee
Confidence 887654110 011111122334668899999998887653 3468889998752 22 4444334445555555
Q ss_pred ecCCCEEE-EEeCC----CeEEEEECCCC-eEEE-EeecCC--ceEEEEEeCCCEEEEEeCCCe--EEEEEC-------C
Q psy3053 765 SEDGCRVL-SCGNN----CMLNVYDLTTG-MQVC-NKVFEE--KLLCLSWAGEEKVILGGALGM--VYLVDL-------I 826 (917)
Q Consensus 765 spdg~~L~-s~s~D----g~I~iwDl~tg-~~i~-~~~~~~--~i~~l~~s~~~~lv~gs~dG~--I~vwdl-------~ 826 (917)
+. |..|+ .+..+ ..|..+|+.++ .... .+.... .+..+++.++..+++...+|. |.++++ .
T Consensus 328 ~~-g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~~~~lv~~~~~~g~~~l~~~dl~~~~~~~~ 406 (751)
T 2xe4_A 328 HG-TSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVRSNYLVVAGRRAGLTRIWTMMADSQDGVFK 406 (751)
T ss_dssp ET-TTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEECSSEEEEEEEETTEEEEEEEECCTTTSCCC
T ss_pred ee-CCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEECCEEEEEEEeCCEEEEEEEeccccccccc
Confidence 44 55554 44333 36777787652 2111 122222 356677776645566666775 556665 3
Q ss_pred CCEEEEEEec-CCCceEEE------eecCC-EEEEEeCC---CeEEEEECcCCeE
Q psy3053 827 QVQLLKQVRA-HKDAVLSL------HFDNC-TMLVGCWD---SCVVIYDVECGRI 870 (917)
Q Consensus 827 ~~~~i~~l~~-h~~~V~si------s~dg~-~Lasgs~D---G~I~Iwdl~tg~~ 870 (917)
+++....+.. ....+..+ ++++. ++++.+.. +.+..+|+.+++.
T Consensus 407 ~g~~~~~l~l~~~~~~~~~~~~~~~~~~~~~l~~~~ss~~~P~~~~~~d~~~~~~ 461 (751)
T 2xe4_A 407 AGTGLREVVMEEPIFTVHLVESQMLEYEEPTFRMEYSSLATPNTWFDVSPQDHSR 461 (751)
T ss_dssp TTTCCEECCCCCSSCEEEECGGGCCCTTCSCEEEEEEETTEEEEEEEECTTTCCE
T ss_pred CCccceEECCCCceeEEEeccCcccCCCCCEEEEEEeCCCCCCEEEEEECCCCcE
Confidence 3331233321 12234455 23544 44444332 4677778777653
No 268
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=98.15 E-value=0.0067 Score=77.33 Aligned_cols=315 Identities=15% Similarity=0.148 Sum_probs=175.8
Q ss_pred CcceEEEEEeCC------CcEEEEEec-CCceEEEeccCCceeeeeeccc-cceEEEEEe--CCCCEEEEEecccEEEEE
Q psy3053 580 KEAITAVAICGE------GISVASVGR-DAMLKIHSLKTGRQERSAVLSS-MTLSSLCIL--PDNCTMLVGCWDSCVVIY 649 (917)
Q Consensus 580 ~~~Vtsv~fSpd------g~~Lasgs~-Dg~I~IWd~~t~~~~~~~~~~~-~~V~sl~~s--pd~~~Lasgs~Dg~I~Iw 649 (917)
.+.|+|+++.+. +.+++.|.. |++++|+++.+.+.+....... ....++.+. ....+|.+|-.||.+.-+
T Consensus 553 ~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~~~~p~si~l~~~~~~~~L~igl~dG~l~~~ 632 (1158)
T 3ei3_A 553 EHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYF 632 (1158)
T ss_dssp SSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEECCSSCCEEEEEEEEETTEEEEEEEETTSEEEEE
T ss_pred CCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEECCCCCCCcEEEEEEeCCCcEEEEEeCCCeEEEE
Confidence 457999999864 368999996 9999999998766554333221 223344333 234578899999998766
Q ss_pred Eec--cCeeeE---EeccCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCC
Q psy3053 650 DVE--CGRIVT---ELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKD 724 (917)
Q Consensus 650 dl~--tg~~i~---~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd 724 (917)
.++ +|.... ..-| ..++.-..+...+..-+-+..+....++.-... ..........--....|+.+
T Consensus 633 ~~d~~tg~l~d~r~~~LG-~~pv~L~~~~~~~~~~V~a~s~rp~liy~~~~~--------l~~s~l~~~~v~~~~~F~se 703 (1158)
T 3ei3_A 633 GLNIETGLLSDRKKVTLG-TQPTVLRTFRSLSTTNVFACSDRPTVIYSSNHK--------LVFSNVNLKEVNYMCPLNSD 703 (1158)
T ss_dssp EECTTTCCEEEEEEEECC-SSCCEEEEEESSSCEEEEEESSSCEEEEESSSS--------EEEEEBSSSCCCEEEEECCS
T ss_pred EEcCCCCccccceeEEcC-CCceEEEEEeeCCceeEEEECCCCEEEEEcCCc--------eEEeccChHHhceEeccCcc
Confidence 654 454432 1223 345544444433333333333444444432211 11111111111123344432
Q ss_pred C--CEEEEEECCCeEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEEeCC-------------------------
Q psy3053 725 N--NQLAVGTEAGELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCGNN------------------------- 777 (917)
Q Consensus 725 g--~~Lasgs~dG~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~D------------------------- 777 (917)
. +-++..+ ++.++|..+........-.-+....+..++++|+.+.++.+..+
T Consensus 704 ~~~~g~v~~~-~~~LrI~~i~~~~~~~~~~ipL~~Tprri~y~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 782 (1158)
T 3ei3_A 704 GYPDSLALAN-NSTLTIGTIDEIQKLHIRTVPLYESPRKICYQEVSQCFGVLSSRIEVQDTSGGTTALRPSASTQALSSS 782 (1158)
T ss_dssp SSTTEEEEEC-SSCEEEEEECCSSSEEEEEEECSSEEEEEEEEGGGTEEEEEEEEEEEECSSSSEEESSCCHHHHCSEEE
T ss_pred cCCCcEEEEc-CCceEEEEecccCCeeEEEEeCCCCceEEEEcCCCCEEEEEEEeccccccccccchhhhhhhhhhhhhc
Confidence 2 3344333 45688887754322222211345678888888877765543311
Q ss_pred ------------------------CeEEEEECCCCeEEEEeecC--CceEEEEEe-----CCCEEEEEe----------C
Q psy3053 778 ------------------------CMLNVYDLTTGMQVCNKVFE--EKLLCLSWA-----GEEKVILGG----------A 816 (917)
Q Consensus 778 ------------------------g~I~iwDl~tg~~i~~~~~~--~~i~~l~~s-----~~~~lv~gs----------~ 816 (917)
+.+++.|..+.+.+..+... +.+.|++.- +...+++|+ .
T Consensus 783 ~~~~~~~~~~~~~~~~~~g~~~~~s~i~lidp~t~~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~ 862 (1158)
T 3ei3_A 783 VSSSKLFSSSTAPHETSFGEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPK 862 (1158)
T ss_dssp ECCCCCC----------CCCEEEEEEEEEEETTTCCEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCC
T ss_pred ccccccccccccCchhhcCCceeeEEEEEEeCCCCeEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCC
Confidence 24677887777777666554 335555532 235788876 3
Q ss_pred CCeEEEEECCCCEEEEEE-ecCCCceEEEe-ecCCEEEEEeCCCeEEEEECcCCeEEE-EecCCCCCEEEEEEcCCCCEE
Q psy3053 817 LGMVYLVDLIQVQLLKQV-RAHKDAVLSLH-FDNCTMLVGCWDSCVVIYDVECGRIVT-ELAGHEDAISCVAWDEKRKRL 893 (917)
Q Consensus 817 dG~I~vwdl~~~~~i~~l-~~h~~~V~sis-~dg~~Lasgs~DG~I~Iwdl~tg~~l~-~l~~h~~~V~slafSpdg~~L 893 (917)
.|.|.++++.+++..... ....++|+++. ++| +|++|- ..+|++|++...+.+. ....+. .|..+.....+.++
T Consensus 863 ~Gri~vf~v~~~kL~lv~~~~v~g~v~al~~~~g-~Lla~i-g~~l~vy~l~~~~~L~~~~~~~~-~i~~~~l~~~~~~I 939 (1158)
T 3ei3_A 863 QGRIVVFQYSDGKLQTVAEKEVKGAVYSMVEFNG-KLLASI-NSTVRLYEWTTEKELRTECNHYN-NIMALYLKTKGDFI 939 (1158)
T ss_dssp CEEEEEEEEETTEEEEEEEEEESSCEEEEEEETT-EEEEEE-TTEEEEEEECTTSCEEEEEEECC-CSCEEEEEEETTEE
T ss_pred ceEEEEEEEECCEEEEEEEEEcCCcCEEEeeeCC-EEEEEc-CCEEEEEECCCCceEEEEeeccc-cEEEEEEeccCCEE
Confidence 589999998755432221 23478899995 566 444443 4689999998665433 221121 23333333357788
Q ss_pred EEEeCCCcEEEEec
Q psy3053 894 ISGNLVGAPKLYAT 907 (917)
Q Consensus 894 aSgs~DG~V~IWdl 907 (917)
+.|+.-..|.+...
T Consensus 940 ~vgD~~~Sv~~~~y 953 (1158)
T 3ei3_A 940 LVGDLMRSVLLLAY 953 (1158)
T ss_dssp EEEESSBCEEEEEE
T ss_pred EEEEhhheEEEEEE
Confidence 88887777776554
No 269
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.13 E-value=0.0052 Score=66.72 Aligned_cols=226 Identities=8% Similarity=-0.051 Sum_probs=138.7
Q ss_pred CCceEEEeccCCceeeeeeccccceEEEEEeCCCCEEEE-EecccEEEEEEecc----CeeeEEeccCCCceeEEEecCC
Q psy3053 601 DAMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTMLV-GCWDSCVVIYDVEC----GRIVTELAGHEDAISCVAWDEK 675 (917)
Q Consensus 601 Dg~I~IWd~~t~~~~~~~~~~~~~V~sl~~spd~~~Las-gs~Dg~I~Iwdl~t----g~~i~~l~~H~~~Vt~l~~spd 675 (917)
...|+..++.+.+....+. .......++|++++..|.. -..++.|..++++. ......+...-.....+++.+.
T Consensus 9 ~~~I~~i~~~~~~~~~~~~-~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~ 87 (316)
T 1ijq_A 9 RHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWI 87 (316)
T ss_dssp BSSEEEEETTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETT
T ss_pred CCeEEEEECCCcceEehhc-CCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeec
Confidence 3567888887765444333 2344678999987655554 45578999999876 2222223323345678999865
Q ss_pred CCEE-EEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEEEECC--CeEEEEECCCCeeeEEec
Q psy3053 676 RKRL-ISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEA--GELIIWSLENHLMTQQLS 752 (917)
Q Consensus 676 ~~~L-~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~d--G~I~iwDl~~~~~~~~l~ 752 (917)
+..| ++-...+.|.+.+..... ..............++++|.+..+..+... +.|...++... ....+.
T Consensus 88 ~~~ly~~d~~~~~I~~~~~~g~~-------~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~-~~~~~~ 159 (316)
T 1ijq_A 88 HSNIYWTDSVLGTVSVADTKGVK-------RKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV-DIYSLV 159 (316)
T ss_dssp TTEEEEEETTTTEEEEEETTSSS-------EEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC-CEEEEE
T ss_pred CCeEEEEECCCCEEEEEeCCCCc-------eEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCC-CeEEEE
Confidence 5544 555667899999986431 111111233567899999976666555443 68888888643 333332
Q ss_pred CCCCCCeEEEEEecCCCEEEEEe-CCCeEEEEECCCCeEEEEeec---CCceEEEEEeCCCEEEEEeCCCeEEEEECCCC
Q psy3053 753 DDINASVNGVLFSEDGCRVLSCG-NNCMLNVYDLTTGMQVCNKVF---EEKLLCLSWAGEEKVILGGALGMVYLVDLIQV 828 (917)
Q Consensus 753 ~~h~~~V~~v~fspdg~~L~s~s-~Dg~I~iwDl~tg~~i~~~~~---~~~i~~l~~s~~~~lv~gs~dG~I~vwdl~~~ 828 (917)
...-.....+++++++..|..+. ..+.|..+|............ ......+++..+..+++....+.|..++..++
T Consensus 160 ~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~~~~~~~~~~~~~P~giav~~~~ly~~d~~~~~V~~~~~~~g 239 (316)
T 1ijq_A 160 TENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTG 239 (316)
T ss_dssp CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEETTEEEEEETTTTEEEEEETTTC
T ss_pred ECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCceEEEeecCCccCCcEEEEEECCEEEEEECCCCeEEEEeCCCC
Confidence 13345678999999877776655 557899999864322211121 23466777776545555566788999998777
Q ss_pred EEEEEEe
Q psy3053 829 QLLKQVR 835 (917)
Q Consensus 829 ~~i~~l~ 835 (917)
+.+..+.
T Consensus 240 ~~~~~i~ 246 (316)
T 1ijq_A 240 SDVNLLA 246 (316)
T ss_dssp CCCEEEE
T ss_pred cceEEEe
Confidence 6555554
No 270
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.13 E-value=0.0021 Score=71.04 Aligned_cols=245 Identities=8% Similarity=-0.034 Sum_probs=147.9
Q ss_pred CcceEEEEEeCCCcEEEEEecCCceEEEeccCCceeeeeeccccceEEEEEeCCCCEEEEE-ecccEEEEEEeccCeeeE
Q psy3053 580 KEAITAVAICGEGISVASVGRDAMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTMLVG-CWDSCVVIYDVECGRIVT 658 (917)
Q Consensus 580 ~~~Vtsv~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~~~~~~~~V~sl~~spd~~~Lasg-s~Dg~I~Iwdl~tg~~i~ 658 (917)
.+..+|.+..+++.+++ + ....|+..++........+. .......++|++.+..|..+ ...+.|..++.+.+....
T Consensus 33 ~d~~~C~~~~~~~~ll~-~-~~~~I~~i~~~g~~~~~~~~-~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~ 109 (349)
T 3v64_C 33 PDRRSCKALGPEPVLLF-A-NRIDIRQVLPHRSEYTLLLN-NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEE 109 (349)
T ss_dssp TTSSCEEESSSCCEEEE-E-CBSCEEEECTTSCCEEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred CCCCcccccccCceeEe-e-cccceEEEeCCCCeeEEeec-CCCceEEEEEeccccEEEEEeccCCceEEEecCCCCceE
Confidence 34455666666443333 3 34557777776544333222 23346789999766555544 457889999988765444
Q ss_pred EeccCCCceeEEEecCCCCEE-EEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEEEE-CC-C
Q psy3053 659 ELAGHEDAISCVAWDEKRKRL-ISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGT-EA-G 735 (917)
Q Consensus 659 ~l~~H~~~Vt~l~~spd~~~L-~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs-~d-G 735 (917)
.+.........+++.+.+..| ++-...+.|.+.++.... ........-.....++++|.+..+..+. .. +
T Consensus 110 ~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~-------~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~ 182 (349)
T 3v64_C 110 VVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAH-------RKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTP 182 (349)
T ss_dssp EECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCS-------CEEEECTTCSCEEEEEEETTTTEEEEEECSSSC
T ss_pred EEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCc-------eEEEEeCCCCCcceEEEecCcCeEEEeccCCCC
Confidence 443333456788998755544 555567889999986541 1111122335678999999666555444 44 7
Q ss_pred eEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEEe-CCCeEEEEECCCCeEEEEee-cCCceEEEEEeCCCEEEE
Q psy3053 736 ELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCG-NNCMLNVYDLTTGMQVCNKV-FEEKLLCLSWAGEEKVIL 813 (917)
Q Consensus 736 ~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s-~Dg~I~iwDl~tg~~i~~~~-~~~~i~~l~~s~~~~lv~ 813 (917)
.|...++.... ...+....-.....++++|++..|..+. ..+.|..+|+.......... .......+++..+..+++
T Consensus 183 ~I~r~~~dG~~-~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~giav~~~~ly~t 261 (349)
T 3v64_C 183 RIEASSMDGSG-RRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITVFEDSLYWT 261 (349)
T ss_dssp EEEEEETTSCS-CEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTEEEEE
T ss_pred EEEEEeCCCCC-cEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEeCCCCCceEEEEECCEEEEe
Confidence 88888887543 3333223345678999998776666554 46789999986533222121 223456677765544555
Q ss_pred EeCCCeEEEEECCCCEEEEEEe
Q psy3053 814 GGALGMVYLVDLIQVQLLKQVR 835 (917)
Q Consensus 814 gs~dG~I~vwdl~~~~~i~~l~ 835 (917)
-...+.|..++..+++....+.
T Consensus 262 d~~~~~V~~~~~~~G~~~~~i~ 283 (349)
T 3v64_C 262 DWHTKSINSANKFTGKNQEIIR 283 (349)
T ss_dssp ETTTTEEEEEETTTCCSCEEEE
T ss_pred cCCCCeEEEEEccCCCccEEec
Confidence 5566788888866665544443
No 271
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.12 E-value=0.00051 Score=71.41 Aligned_cols=167 Identities=13% Similarity=0.094 Sum_probs=121.6
Q ss_pred eeeEEecCCCCCCeEEEEEecCCCEEEEEeCC--CeEEEEECCCCeEEEEeecCCce--EEEEEeCCCEEEEEeCCCeEE
Q psy3053 746 LMTQQLSDDINASVNGVLFSEDGCRVLSCGNN--CMLNVYDLTTGMQVCNKVFEEKL--LCLSWAGEEKVILGGALGMVY 821 (917)
Q Consensus 746 ~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~D--g~I~iwDl~tg~~i~~~~~~~~i--~~l~~s~~~~lv~gs~dG~I~ 821 (917)
+.+.++......-...+.|++ +.+..+++.+ +.|+.+|+.+++.+......... ..++..++..+++.-.++.+.
T Consensus 10 ~v~~~~phd~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~~~ly~ltw~~~~v~ 88 (243)
T 3mbr_X 10 RVVKRYPHDTTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAWRDRLIQLTWRNHEGF 88 (243)
T ss_dssp EEEEEEECCTTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEE
T ss_pred EEEEEcCCCCccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEeCCEEEEEEeeCCEEE
Confidence 455566534456678999986 5556666664 48999999999999988877654 345666764556666789999
Q ss_pred EEECCCCEEEEEEecCCCceEEEeecCCEEEEEeCCCeEEEEECcCCeEEEEecCCC-----CCEEEEEEcCCCCEEEEE
Q psy3053 822 LVDLIQVQLLKQVRAHKDAVLSLHFDNCTMLVGCWDSCVVIYDVECGRIVTELAGHE-----DAISCVAWDEKRKRLISG 896 (917)
Q Consensus 822 vwdl~~~~~i~~l~~h~~~V~sis~dg~~Lasgs~DG~I~Iwdl~tg~~l~~l~~h~-----~~V~slafSpdg~~LaSg 896 (917)
++|..+.+.+.++..... -..++++++.|+.+..++.|.++|..+.+.+.++.-.. ..++.+.|. +|+..+..
T Consensus 89 v~D~~tl~~~~ti~~~~~-Gwglt~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~lyanv 166 (243)
T 3mbr_X 89 VYDLATLTPRARFRYPGE-GWALTSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGELLANV 166 (243)
T ss_dssp EEETTTTEEEEEEECSSC-CCEEEECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEE
T ss_pred EEECCcCcEEEEEeCCCC-ceEEeeCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCEEEEEE
Confidence 999999999999975433 35667888888888889999999999999888775422 345667766 66655555
Q ss_pred eCCCcEEEEecCcc-eEEEE
Q psy3053 897 NLVGAPKLYATEFY-LLYVL 915 (917)
Q Consensus 897 s~DG~V~IWdl~~~-ll~~L 915 (917)
-.+..|.+-|.++. .+..+
T Consensus 167 w~s~~I~vIDp~tG~V~~~i 186 (243)
T 3mbr_X 167 WLTSRIARIDPASGKVVAWI 186 (243)
T ss_dssp TTTTEEEEECTTTCBEEEEE
T ss_pred CCCCeEEEEECCCCCEEEEE
Confidence 46778888888754 44443
No 272
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.12 E-value=0.00082 Score=70.69 Aligned_cols=206 Identities=10% Similarity=0.088 Sum_probs=133.6
Q ss_pred eeccCCcceEEEEEeCCCcEEEE-EecCCceEEEeccCCceeeeeecc-ccceEEEEEeCCCCEEEEEecccEEEEEEec
Q psy3053 575 FCHSHKEAITAVAICGEGISVAS-VGRDAMLKIHSLKTGRQERSAVLS-SMTLSSLCILPDNCTMLVGCWDSCVVIYDVE 652 (917)
Q Consensus 575 ~l~~H~~~Vtsv~fSpdg~~Las-gs~Dg~I~IWd~~t~~~~~~~~~~-~~~V~sl~~spd~~~Lasgs~Dg~I~Iwdl~ 652 (917)
.+.+-.+.+..++++|+++.|++ ...++.|...|.. ++.++.+... ......+++.+++.++++.-.++.+.++++.
T Consensus 21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~ 99 (255)
T 3qqz_A 21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLT 99 (255)
T ss_dssp ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEEC
T ss_pred ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcC
Confidence 44555568999999998776655 6678888888887 7777776543 2456778888888776765567889999887
Q ss_pred cCee---eEEec------cCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceee-----eccCCCceEE
Q psy3053 653 CGRI---VTELA------GHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVS-----QLDLDNRIKC 718 (917)
Q Consensus 653 tg~~---i~~l~------~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~-----~~~h~~~V~~ 718 (917)
.... +.... ........++|+|.++.|+++.......+|.+...... . ...... ....-..+.+
T Consensus 100 ~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~-~-~l~i~~~~~~~~~~~~~d~S~ 177 (255)
T 3qqz_A 100 PNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSS-N-ELHISKDKALQRQFTLDDVSG 177 (255)
T ss_dssp TTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCS-S-CCEEEECHHHHHTCCSSCCCE
T ss_pred CCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccC-C-ceeeecchhhccccccCCcee
Confidence 5432 22221 13445689999999888888776665666665421000 0 001110 0112345789
Q ss_pred EEEeCCC-CEEEEEECCCeEEEEECCCCeeeEEecCCC--------CCCeEEEEEecCCCEEEEEeCCCeEEEEEC
Q psy3053 719 LAISKDN-NQLAVGTEAGELIIWSLENHLMTQQLSDDI--------NASVNGVLFSEDGCRVLSCGNNCMLNVYDL 785 (917)
Q Consensus 719 l~~spdg-~~Lasgs~dG~I~iwDl~~~~~~~~l~~~h--------~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl 785 (917)
++++|.. ++++.+..+..+..+|... +.+..+.-.. -.....|+|.++|+. ..+++.+.++.+.-
T Consensus 178 l~~dp~tg~lliLS~~s~~L~~~d~~g-~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~l-yIvsE~n~~y~f~~ 251 (255)
T 3qqz_A 178 AEFNQQKNTLLVLSHESRALQEVTLVG-EVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNI-YIVSEPNRFYRFTP 251 (255)
T ss_dssp EEEETTTTEEEEEETTTTEEEEECTTC-CEEEEEECSTTGGGCSSCCCSEEEEEECTTCCE-EEEETTTEEEEEEC
T ss_pred EEEcCCCCeEEEEECCCCeEEEEcCCC-CEEEEEEcCCccCCcccccCCCCeeEECCCCCE-EEEcCCceEEEEEe
Confidence 9999965 4555566677888999764 4554443111 136789999999974 44477777777754
No 273
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.09 E-value=0.00089 Score=72.25 Aligned_cols=230 Identities=11% Similarity=0.011 Sum_probs=135.1
Q ss_pred cceEEEEEeCCCcEEEEEecCCceEEEeccCCceeeeeeccccceEEEEEeCCCCEEEEEecc--cEEEEEEeccCeeeE
Q psy3053 581 EAITAVAICGEGISVASVGRDAMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTMLVGCWD--SCVVIYDVECGRIVT 658 (917)
Q Consensus 581 ~~Vtsv~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~~~~~~~~V~sl~~spd~~~Lasgs~D--g~I~Iwdl~tg~~i~ 658 (917)
....+++++++|+++++-..++.|..||...+ ....+.. ......+++.++++++++.... ..|..++..+++...
T Consensus 32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~-~~~~~~~-~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~~ 109 (306)
T 2p4o_A 32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGN-QQIHATV-EGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVET 109 (306)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTTCC-EEEEEEC-SSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEE
T ss_pred CCcceEEECCCCCEEEEeCCCCeEEEECCCCc-eEEEEeC-CCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEEE
Confidence 45678999999987666667889999987653 3332322 3457789999999866655432 246667777776543
Q ss_pred Eecc-CCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCcc-CCccee--eeccCCCceEEEEEeCCCCEEEEE-EC
Q psy3053 659 ELAG-HEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMK-PSKSLV--SQLDLDNRIKCLAISKDNNQLAVG-TE 733 (917)
Q Consensus 659 ~l~~-H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~-~~~~~~--~~~~h~~~V~~l~~spdg~~Lasg-s~ 733 (917)
.... .......++..+++..+++-+.++.|.++|...+..... ...... .....-.....+ +++++.+.++ +.
T Consensus 110 ~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~~ 187 (306)
T 2p4o_A 110 LLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSNTE 187 (306)
T ss_dssp EEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEETT
T ss_pred EEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCEEEEEeCC
Confidence 2221 122234555555554455544688888888754310000 000000 000111234455 7888766554 45
Q ss_pred CCeEEEEECCC-Cee--eEEecCCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeEEE--EeecC-CceEEEEEe-
Q psy3053 734 AGELIIWSLEN-HLM--TQQLSDDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVC--NKVFE-EKLLCLSWA- 806 (917)
Q Consensus 734 dG~I~iwDl~~-~~~--~~~l~~~h~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~tg~~i~--~~~~~-~~i~~l~~s- 806 (917)
.+.|..+++.. +.. ...+. .......++++++|++.++....+.|.++|.. |+... ..... ....++++.
T Consensus 188 ~~~I~~~~~~~~g~~~~~~~~~--~~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~~~~~~~~~~~p~~~a~~g 264 (306)
T 2p4o_A 188 KMLLLRIPVDSTDKPGEPEIFV--EQTNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQAEQGVIGSTAVAFGQ 264 (306)
T ss_dssp TTEEEEEEBCTTSCBCCCEEEE--ESCCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECGGGTCTTEEEEEECC
T ss_pred CCEEEEEEeCCCCCCCccEEEe--ccCCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEEEEeecccccCCceEEEEec
Confidence 68899999874 321 11111 11345678999999887777777899999975 55432 23333 558888887
Q ss_pred --CC-CEEEEEeCC
Q psy3053 807 --GE-EKVILGGAL 817 (917)
Q Consensus 807 --~~-~~lv~gs~d 817 (917)
++ +.+++++..
T Consensus 265 ~~~d~~~LyVt~~~ 278 (306)
T 2p4o_A 265 TEGDCTAIYVVTNG 278 (306)
T ss_dssp STTTTTEEEEEECT
T ss_pred ccCCCCEEEEECCC
Confidence 44 455555443
No 274
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=98.05 E-value=0.0067 Score=66.15 Aligned_cols=270 Identities=9% Similarity=0.043 Sum_probs=151.1
Q ss_pred cceEEEEEeCCCCEEEEEecccEEEEEEeccCeeeEEec----cCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCC
Q psy3053 623 MTLSSLCILPDNCTMLVGCWDSCVVIYDVECGRIVTELA----GHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWS 698 (917)
Q Consensus 623 ~~V~sl~~spd~~~Lasgs~Dg~I~Iwdl~tg~~i~~l~----~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~ 698 (917)
..+.++.+.+++..+++ +.+|.| +...+.|+.-.... .....+.++.+.+ + .++.++.++.|.. ..+.+ .
T Consensus 36 ~~~~~v~~~~~~~~~~~-G~~g~i-~~s~DgG~tW~~~~~~~~~~~~~~~~i~~~~-~-~~~~~g~~g~i~~-S~DgG-~ 109 (327)
T 2xbg_A 36 ATILDMSFIDRHHGWLV-GVNATL-METRDGGQTWEPRTLVLDHSDYRFNSVSFQG-N-EGWIVGEPPIMLH-TTDGG-Q 109 (327)
T ss_dssp SCEEEEEESSSSCEEEE-ETTTEE-EEESSTTSSCEECCCCCSCCCCEEEEEEEET-T-EEEEEEETTEEEE-ESSTT-S
T ss_pred CcEEEEEECCCCcEEEE-cCCCeE-EEeCCCCCCCeECCCCCCCCCccEEEEEecC-C-eEEEEECCCeEEE-ECCCC-C
Confidence 35778888777777774 456655 33344443222221 1244688999986 3 4444556675443 22222 1
Q ss_pred CccCCcceeeeccCCCceEEEEEeCCCCEEEEEECCCeEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEEeCCC
Q psy3053 699 HMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCGNNC 778 (917)
Q Consensus 699 ~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~dG~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~Dg 778 (917)
... .......+...+..+.+.+++..++++ .+|.|.. ..+.++.-..........+..+++.+++..++++...+
T Consensus 110 tW~---~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~g~v~~-S~DgG~tW~~~~~~~~~~~~~~~~~~~~~~~~~g~~G~ 184 (327)
T 2xbg_A 110 SWS---QIPLDPKLPGSPRLIKALGNGSAEMIT-NVGAIYR-TKDSGKNWQALVQEAIGVMRNLNRSPSGEYVAVSSRGS 184 (327)
T ss_dssp SCE---ECCCCTTCSSCEEEEEEEETTEEEEEE-TTCCEEE-ESSTTSSEEEEECSCCCCEEEEEECTTSCEEEEETTSS
T ss_pred Cce---ECccccCCCCCeEEEEEECCCCEEEEe-CCccEEE-EcCCCCCCEEeecCCCcceEEEEEcCCCcEEEEECCCc
Confidence 111 111111123456778877777666554 4565432 33345444444335566789999999988776665444
Q ss_pred eEEEEEC--CCCeEEEEeecCCceEEEEEeCCCEEEEEeCCCeEEEEECCCCEEEEEEec----CCCceEEEee--cCCE
Q psy3053 779 MLNVYDL--TTGMQVCNKVFEEKLLCLSWAGEEKVILGGALGMVYLVDLIQVQLLKQVRA----HKDAVLSLHF--DNCT 850 (917)
Q Consensus 779 ~I~iwDl--~tg~~i~~~~~~~~i~~l~~s~~~~lv~gs~dG~I~vwdl~~~~~i~~l~~----h~~~V~sis~--dg~~ 850 (917)
..+-.|- .+-+.+. ......+..+.+.+++.+++++.+|.+++.+...++.-..+.. +...+.++.+ ++..
T Consensus 185 ~~~S~d~gG~tW~~~~-~~~~~~~~~~~~~~~g~~~~~~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~ 263 (327)
T 2xbg_A 185 FYSTWEPGQTAWEPHN-RTTSRRLHNMGFTPDGRLWMIVNGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTPNEV 263 (327)
T ss_dssp EEEEECTTCSSCEEEE-CCSSSCEEEEEECTTSCEEEEETTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSSSCE
T ss_pred EEEEeCCCCCceeECC-CCCCCccceeEECCCCCEEEEeCCceEEEecCCCCCeeEeccCCcccCCcceEEEEecCCCEE
Confidence 3444442 2233332 2334567888888888888888899888765333443333321 2234677744 4555
Q ss_pred EEEEeCCCeEEEEECcCCeEEEEec---CCCCCEEEEEEcCCCCEEEEEeCCCcEEEEec
Q psy3053 851 MLVGCWDSCVVIYDVECGRIVTELA---GHEDAISCVAWDEKRKRLISGNLVGAPKLYAT 907 (917)
Q Consensus 851 Lasgs~DG~I~Iwdl~tg~~l~~l~---~h~~~V~slafSpdg~~LaSgs~DG~V~IWdl 907 (917)
+++ +.+|.| .+..+.|+.-..+. .....+.++.|.+++ .+++++.+|.|.-++-
T Consensus 264 ~~~-g~~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~-~~~~~G~~G~i~~~~~ 320 (327)
T 2xbg_A 264 WLA-GGAGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFSPD-QGFILGQKGILLRYVT 320 (327)
T ss_dssp EEE-ESTTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEEETT-EEEEECSTTEEEEECC
T ss_pred EEE-eCCCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEECCC-ceEEEcCCceEEEEcC
Confidence 554 457766 45555555444343 234567888887554 5777788997766553
No 275
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.03 E-value=0.0093 Score=67.08 Aligned_cols=236 Identities=8% Similarity=-0.063 Sum_probs=148.0
Q ss_pred cCCceEEEeccCCceeeeeeccccceEEEEEeCCCCEEEEE-ecccEEEEEEeccC----eeeEEeccCCCceeEEEecC
Q psy3053 600 RDAMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTMLVG-CWDSCVVIYDVECG----RIVTELAGHEDAISCVAWDE 674 (917)
Q Consensus 600 ~Dg~I~IWd~~t~~~~~~~~~~~~~V~sl~~spd~~~Lasg-s~Dg~I~Iwdl~tg----~~i~~l~~H~~~Vt~l~~sp 674 (917)
....|+..++........+ .....+..++|++.+..|..+ ...+.|+.++++.. .....+.........+++.+
T Consensus 90 ~~~~I~~i~l~~~~~~~~~-~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~ 168 (400)
T 3p5b_L 90 NRHEVRKMTLDRSEYTSLI-PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDW 168 (400)
T ss_dssp ETTEEEEECTTSCSCEEEE-CSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEET
T ss_pred ccceeEEEccCCcceeEec-cccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEe
Confidence 3467888888765443332 234456789999866655555 45788988888752 23333333445678899987
Q ss_pred C-CCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEEEEC--CCeEEEEECCCCeeeEEe
Q psy3053 675 K-RKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTE--AGELIIWSLENHLMTQQL 751 (917)
Q Consensus 675 d-~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~--dG~I~iwDl~~~~~~~~l 751 (917)
. ++..++-+..+.|.+.++.... ..............++++|.+..|..+.. .+.|...++.........
T Consensus 169 ~~~~lY~~d~~~~~I~~~~~~g~~-------~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~ 241 (400)
T 3p5b_L 169 IHSNIYWTDSVLGTVSVADTKGVK-------RKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLV 241 (400)
T ss_dssp TTTEEEEEETTTTEEEEECTTTCS-------EEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEE
T ss_pred cCCceEEEECCCCeEEEEeCCCCc-------eEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEE
Confidence 4 4444555567889999886541 11111223345789999997766665553 378999988754433333
Q ss_pred cCCCCCCeEEEEEecCCCEEEEEe-CCCeEEEEECCCCeEEEEeec---CCceEEEEEeCCCEEEEEeCCCeEEEEECCC
Q psy3053 752 SDDINASVNGVLFSEDGCRVLSCG-NNCMLNVYDLTTGMQVCNKVF---EEKLLCLSWAGEEKVILGGALGMVYLVDLIQ 827 (917)
Q Consensus 752 ~~~h~~~V~~v~fspdg~~L~s~s-~Dg~I~iwDl~tg~~i~~~~~---~~~i~~l~~s~~~~lv~gs~dG~I~vwdl~~ 827 (917)
. ..-.....+++++++..|..+. ..+.|..+|+........... -.....++...+..+++....+.|..+|..+
T Consensus 242 ~-~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~~~~lywtd~~~~~V~~~~~~~ 320 (400)
T 3p5b_L 242 T-ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLT 320 (400)
T ss_dssp C-SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEEETTEEEEEESSSCSEEEEESSS
T ss_pred E-CCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEeCCEEEEecCCCCeEEEEEcCC
Confidence 3 3345788999998877777665 467899999865433222221 2346677777775666666778899999888
Q ss_pred CEEEEEEecCCCceEEE
Q psy3053 828 VQLLKQVRAHKDAVLSL 844 (917)
Q Consensus 828 ~~~i~~l~~h~~~V~si 844 (917)
++.+..+.........+
T Consensus 321 G~~~~~i~~~~~~p~~i 337 (400)
T 3p5b_L 321 GSDVNLLAENLLSPEDM 337 (400)
T ss_dssp CCCCEEEECSCSCEEEE
T ss_pred CCceEEEecCCCCCceE
Confidence 87666665443334443
No 276
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.02 E-value=0.0038 Score=69.95 Aligned_cols=242 Identities=7% Similarity=-0.065 Sum_probs=147.4
Q ss_pred eEEEEEeCCCcEEEEEecCCceEEEeccCCceeeeeeccccceEEEEEeCCCCEEE-EEecccEEEEEEeccCeeeEEec
Q psy3053 583 ITAVAICGEGISVASVGRDAMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTML-VGCWDSCVVIYDVECGRIVTELA 661 (917)
Q Consensus 583 Vtsv~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~~~~~~~~V~sl~~spd~~~La-sgs~Dg~I~Iwdl~tg~~i~~l~ 661 (917)
-+|.+..+.+ +|+.+ ....|+..++..+....... .......++|.+.+..|. +-...+.|+.++.+.+.....+.
T Consensus 79 ~~C~~~~~~~-~l~~~-~~~~I~~i~~~~~~~~~~~~-~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~ 155 (386)
T 3v65_B 79 RSCKALGPEP-VLLFA-NRIDIRQVLPHRSEYTLLLN-NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVS 155 (386)
T ss_dssp SCEEECSSCC-EEEEE-CBSCEEEECTTSCCCEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEEC
T ss_pred CeECCccccc-eeEee-cCccceeeccCCCcEEEEec-CCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEe
Confidence 3455555544 33333 34568888877654433332 233467899997655554 44567889999988765444444
Q ss_pred cCCCceeEEEecCCCCEE-EEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEEEEC-C-CeEE
Q psy3053 662 GHEDAISCVAWDEKRKRL-ISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTE-A-GELI 738 (917)
Q Consensus 662 ~H~~~Vt~l~~spd~~~L-~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~-d-G~I~ 738 (917)
........+++.+.+..| ++-...+.|.+.++.... ........-.....++++|.+..|..+.. . +.|.
T Consensus 156 ~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~-------~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~ 228 (386)
T 3v65_B 156 TGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAH-------RKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIE 228 (386)
T ss_dssp SSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCS-------CEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEE
T ss_pred CCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCc-------eEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEE
Confidence 333456778888755555 455556788888876431 11111223356789999997766655543 3 6788
Q ss_pred EEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEEe-CCCeEEEEECCCCeEEEEee-cCCceEEEEEeCCCEEEEEeC
Q psy3053 739 IWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCG-NNCMLNVYDLTTGMQVCNKV-FEEKLLCLSWAGEEKVILGGA 816 (917)
Q Consensus 739 iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s-~Dg~I~iwDl~tg~~i~~~~-~~~~i~~l~~s~~~~lv~gs~ 816 (917)
..++.......... ..-.....++++|++..|..+. ..+.|..+|+.......... .......+++..+..+++...
T Consensus 229 r~~~dG~~~~~~~~-~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~giav~~~~ly~td~~ 307 (386)
T 3v65_B 229 ASSMDGSGRRIIAD-THLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITVFEDSLYWTDWH 307 (386)
T ss_dssp EEETTSCSCEEEEC-SSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEECSSCSSEEEEEEETTEEEEEETT
T ss_pred EEeCCCCCcEEEEE-CCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEECCCCCceEEEEECCEEEEeeCC
Confidence 88887543333332 3345678999998766666554 56789999986433222221 233466777766655566666
Q ss_pred CCeEEEEECCCCEEEEEEe
Q psy3053 817 LGMVYLVDLIQVQLLKQVR 835 (917)
Q Consensus 817 dG~I~vwdl~~~~~i~~l~ 835 (917)
.+.|..++..+++....+.
T Consensus 308 ~~~V~~~~~~~G~~~~~i~ 326 (386)
T 3v65_B 308 TKSINSANKFTGKNQEIIR 326 (386)
T ss_dssp TTEEEEEETTTCCSCEEEE
T ss_pred CCeEEEEECCCCcceEEEc
Confidence 7888888876666555554
No 277
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=97.99 E-value=0.0017 Score=68.20 Aligned_cols=205 Identities=11% Similarity=0.087 Sum_probs=135.1
Q ss_pred eeccccceEEEEEeCCCCEEE-EEecccEEEEEEeccCeeeEEecc-CCCceeEEEecCCCCEEEEEECCCeEEEEeCCC
Q psy3053 618 AVLSSMTLSSLCILPDNCTML-VGCWDSCVVIYDVECGRIVTELAG-HEDAISCVAWDEKRKRLISGSWDCTVRVWNTGA 695 (917)
Q Consensus 618 ~~~~~~~V~sl~~spd~~~La-sgs~Dg~I~Iwdl~tg~~i~~l~~-H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~ 695 (917)
+.+-...++.++++|++..|+ +...++.|...|.. ++.++.+.- -....-.+++.+++.++++.-.++.+.++++..
T Consensus 22 l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~ 100 (255)
T 3qqz_A 22 IAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLTP 100 (255)
T ss_dssp CTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEECT
T ss_pred CCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcCC
Confidence 334445689999999866554 56778899999998 888777642 224678889988887767766778899988765
Q ss_pred CCCCccCCccee---eeccCCCceEEEEEeCCCCEEEEEECCCeEEEEECCC---CeeeEEec------CCCCCCeEEEE
Q psy3053 696 SWSHMKPSKSLV---SQLDLDNRIKCLAISKDNNQLAVGTEAGELIIWSLEN---HLMTQQLS------DDINASVNGVL 763 (917)
Q Consensus 696 ~~~~~~~~~~~~---~~~~h~~~V~~l~~spdg~~Lasgs~dG~I~iwDl~~---~~~~~~l~------~~h~~~V~~v~ 763 (917)
...... ..... ...........++++|.++.|.++.......+|.... ...+.... ......+.+++
T Consensus 101 ~~~i~~-~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~ 179 (255)
T 3qqz_A 101 NSEVKI-LKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAE 179 (255)
T ss_dssp TCCEEE-EEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEE
T ss_pred CCeeee-eeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEE
Confidence 421000 00000 0112345578999999998887777665555555431 11112121 12334678999
Q ss_pred EecCC-CEEEEEeCCCeEEEEECCCCeEEEEeecCC----------ceEEEEEeCCCEEEEEeCCCeEEEEEC
Q psy3053 764 FSEDG-CRVLSCGNNCMLNVYDLTTGMQVCNKVFEE----------KLLCLSWAGEEKVILGGALGMVYLVDL 825 (917)
Q Consensus 764 fspdg-~~L~s~s~Dg~I~iwDl~tg~~i~~~~~~~----------~i~~l~~s~~~~lv~gs~dG~I~vwdl 825 (917)
++|.. .+++....++.+.++|.. |+.+....... +.-.++++++|.+.+.+..+.++.+..
T Consensus 180 ~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIvsE~n~~y~f~~ 251 (255)
T 3qqz_A 180 FNQQKNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIVSEPNRFYRFTP 251 (255)
T ss_dssp EETTTTEEEEEETTTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEEETTTEEEEEEC
T ss_pred EcCCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEECCCCCEEEEcCCceEEEEEe
Confidence 99964 455556667788899965 55666655442 567899999988888888887777754
No 278
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=97.97 E-value=0.00042 Score=83.47 Aligned_cols=237 Identities=9% Similarity=0.008 Sum_probs=139.3
Q ss_pred EEEecC-CCCEEEEEECCC-----------eEEEEeCCCCCCCccCCcceeee-ccCCCceEEEEEeCCCCEEEEEEC-C
Q psy3053 669 CVAWDE-KRKRLISGSWDC-----------TVRVWNTGASWSHMKPSKSLVSQ-LDLDNRIKCLAISKDNNQLAVGTE-A 734 (917)
Q Consensus 669 ~l~~sp-d~~~L~Sgs~Dg-----------tI~vWdl~~~~~~~~~~~~~~~~-~~h~~~V~~l~~spdg~~Lasgs~-d 734 (917)
++++.+ +++.++.|+.+. .+.+||..++.- . .+... ..+.....++++..+++++++|+. +
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w--~---~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~ 264 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIV--S---DRTVTVTKHDMFCPGISMDGNGQIVVTGGNDA 264 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCB--C---CCEEEECSCCCSSCEEEECTTSCEEEECSSST
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcE--E---eCcccCCCCCCccccccCCCCCCEEEeCCCCC
Confidence 556666 888888887643 588899877621 1 11111 122333445777889999999984 4
Q ss_pred CeEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEEe-CC-----CeEEEEECCCCeEEEEe-----ecCCc-eEE
Q psy3053 735 GELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCG-NN-----CMLNVYDLTTGMQVCNK-----VFEEK-LLC 802 (917)
Q Consensus 735 G~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s-~D-----g~I~iwDl~tg~~i~~~-----~~~~~-i~~ 802 (917)
+.+.+||..+.+-...-.......-.+++..++|+.++.|+ .+ ..+.+||..+++-.... ..... -.+
T Consensus 265 ~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~~~ 344 (656)
T 1k3i_A 265 KKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQG 344 (656)
T ss_dssp TCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTG
T ss_pred CceEEecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcceeCCCccccccccccccc
Confidence 68999999876543322211122224556667999999988 34 46999999887644321 11100 000
Q ss_pred EEEeCCCEEEEEeC---------CCeEEEEECCCCEEEEEEecCCC---------ceEEE---eecCCEEEEEeCCC---
Q psy3053 803 LSWAGEEKVILGGA---------LGMVYLVDLIQVQLLKQVRAHKD---------AVLSL---HFDNCTMLVGCWDS--- 858 (917)
Q Consensus 803 l~~s~~~~lv~gs~---------dG~I~vwdl~~~~~i~~l~~h~~---------~V~si---s~dg~~Lasgs~DG--- 858 (917)
+....+..++.|+. ...+..||..+.........+.. .-.++ ..++++++.|+.++
T Consensus 345 ~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~ 424 (656)
T 1k3i_A 345 LYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQD 424 (656)
T ss_dssp GGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSS
T ss_pred eeecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCC
Confidence 01011223344443 34577888877654433322211 12233 23788888887543
Q ss_pred --------eEEEEECcCCeEEEEe--cCCCCCE-EEEEEcCCCCEEEEEeCC-----------CcEEEEecCcc
Q psy3053 859 --------CVVIYDVECGRIVTEL--AGHEDAI-SCVAWDEKRKRLISGNLV-----------GAPKLYATEFY 910 (917)
Q Consensus 859 --------~I~Iwdl~tg~~l~~l--~~h~~~V-~slafSpdg~~LaSgs~D-----------G~V~IWdl~~~ 910 (917)
.|.+||..+.+..... ..+..+. .+++..|+|+.++.||.+ ..+.+||.+..
T Consensus 425 ~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~ 498 (656)
T 1k3i_A 425 SDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQD 498 (656)
T ss_dssp SBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGT
T ss_pred CCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEcCCCC
Confidence 6888888877765443 2223332 344667899999999865 46889998654
No 279
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=97.95 E-value=0.0044 Score=67.48 Aligned_cols=227 Identities=7% Similarity=-0.040 Sum_probs=139.9
Q ss_pred CCceEEEeccCCceee-eeeccccceEEEEEeCCCCEE-EEEecccEEEEEEeccCeee-EEeccCCCceeEEEecCCCC
Q psy3053 601 DAMLKIHSLKTGRQER-SAVLSSMTLSSLCILPDNCTM-LVGCWDSCVVIYDVECGRIV-TELAGHEDAISCVAWDEKRK 677 (917)
Q Consensus 601 Dg~I~IWd~~t~~~~~-~~~~~~~~V~sl~~spd~~~L-asgs~Dg~I~Iwdl~tg~~i-~~l~~H~~~Vt~l~~spd~~ 677 (917)
...|+..++....... ...........++|.+.+..| ++-...+.|..++.+.+... ..+...-.....+++.+.+.
T Consensus 12 ~~~I~~i~l~~~~~~~~~~~~~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~g 91 (318)
T 3sov_A 12 RRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGE 91 (318)
T ss_dssp EEEEEEEETTCTTSCCEEEEEEEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTTT
T ss_pred cCeEEEEECCCCceEEEEEecCCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCCC
Confidence 4567888887653211 111122345678898865444 45456788999998766321 22222234567888887444
Q ss_pred -EEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEEEEC--CCeEEEEECCCCeeeEEecCC
Q psy3053 678 -RLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTE--AGELIIWSLENHLMTQQLSDD 754 (917)
Q Consensus 678 -~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~--dG~I~iwDl~~~~~~~~l~~~ 754 (917)
..++-...+.|.+.+..... ..............++++|.+..+..+.. .+.|...++.......... .
T Consensus 92 ~ly~~d~~~~~I~~~~~dG~~-------~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~-~ 163 (318)
T 3sov_A 92 KLYWTDSETNRIEVSNLDGSL-------RKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIIN-S 163 (318)
T ss_dssp EEEEEETTTTEEEEEETTSCS-------CEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEEC-S
T ss_pred eEEEEECCCCEEEEEECCCCc-------EEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEEE-C
Confidence 44555567899999986541 11111133456789999997666666553 5788888886433222222 2
Q ss_pred CCCCeEEEEEecCCCEEEEEe-CCCeEEEEECCCCeEEEEee-cCCceEEEEEeCCCEEEEEeCCCeEEEEECCCCEEEE
Q psy3053 755 INASVNGVLFSEDGCRVLSCG-NNCMLNVYDLTTGMQVCNKV-FEEKLLCLSWAGEEKVILGGALGMVYLVDLIQVQLLK 832 (917)
Q Consensus 755 h~~~V~~v~fspdg~~L~s~s-~Dg~I~iwDl~tg~~i~~~~-~~~~i~~l~~s~~~~lv~gs~dG~I~vwdl~~~~~i~ 832 (917)
.-...+.+++++++..|..+. ..+.|..+|+.......... .......+++..+..+++-...+.|..++..+++...
T Consensus 164 ~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~glav~~~~lywtd~~~~~V~~~~~~~G~~~~ 243 (318)
T 3sov_A 164 EIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFEDILYWTDWSTHSILACNKYTGEGLR 243 (318)
T ss_dssp SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSCCSCEEEEEEETTEEEEEETTTTEEEEEETTTCCSCE
T ss_pred CCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEecCCCCCceEEEEeCCEEEEEecCCCeEEEEECCCCCceE
Confidence 345678999999776666554 56789999986432221111 2345677788777566666677889999987776555
Q ss_pred EEe
Q psy3053 833 QVR 835 (917)
Q Consensus 833 ~l~ 835 (917)
.+.
T Consensus 244 ~i~ 246 (318)
T 3sov_A 244 EIH 246 (318)
T ss_dssp EEE
T ss_pred EEe
Confidence 554
No 280
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=97.91 E-value=0.0026 Score=72.41 Aligned_cols=153 Identities=7% Similarity=-0.018 Sum_probs=96.5
Q ss_pred ceEEEEEeC-CCcEEEEEecCCceEEEeccCCceeeeeeccccceEEEEEeCCCCEEEEEecc----c-EEEEEEeccCe
Q psy3053 582 AITAVAICG-EGISVASVGRDAMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTMLVGCWD----S-CVVIYDVECGR 655 (917)
Q Consensus 582 ~Vtsv~fSp-dg~~Lasgs~Dg~I~IWd~~t~~~~~~~~~~~~~V~sl~~spd~~~Lasgs~D----g-~I~Iwdl~tg~ 655 (917)
....++++| ++..|+.+...+.|+.+|..++.... +.........++++++++.|.++... . .+...+. .+.
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~-~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~-~g~ 215 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVST-VYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTR-ESG 215 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEE-EECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEG-GGT
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEE-EecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeC-CCc
Confidence 456889998 45667776666888899987665433 33344456789999999966666542 1 3433443 332
Q ss_pred ee--EEeccCCCceeEEEecC-CCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEE-EEE
Q psy3053 656 IV--TELAGHEDAISCVAWDE-KRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQL-AVG 731 (917)
Q Consensus 656 ~i--~~l~~H~~~Vt~l~~sp-d~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~L-asg 731 (917)
.. ..+.. ......++++| ++..+++-..++.|..++..+... ..............++++|+|+.| ++-
T Consensus 216 ~~~~~~l~~-~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~------~~~~~~~~~~~P~gia~~pdG~~lyv~d 288 (430)
T 3tc9_A 216 FKVITELTK-GQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQET------TPLFTIQDSGWEFHIQFHPSGNYAYIVV 288 (430)
T ss_dssp SCSEEEEEE-CSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEE------EEEEECSSSSCCEEEEECTTSSEEEEEE
T ss_pred eeeeeeecc-CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcE------EEEEEcCCCCcceeEEEcCCCCEEEEEE
Confidence 22 22221 23456788999 666666666778999999875410 011122223457899999999955 444
Q ss_pred ECCCeEEEEECC
Q psy3053 732 TEAGELIIWSLE 743 (917)
Q Consensus 732 s~dG~I~iwDl~ 743 (917)
...+.|..++..
T Consensus 289 ~~~~~I~~~~~d 300 (430)
T 3tc9_A 289 VNQHYILRSDYD 300 (430)
T ss_dssp TTTTEEEEEEEE
T ss_pred CCCCEEEEEeCC
Confidence 567889998765
No 281
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=97.89 E-value=0.11 Score=63.39 Aligned_cols=323 Identities=14% Similarity=0.075 Sum_probs=183.7
Q ss_pred cceEEEEEeCCCcEEEEEecCCceEEEeccCCceeeee-ec----cccceEEEEEeCCCCEEEEEecccEEEEEEeccCe
Q psy3053 581 EAITAVAICGEGISVASVGRDAMLKIHSLKTGRQERSA-VL----SSMTLSSLCILPDNCTMLVGCWDSCVVIYDVECGR 655 (917)
Q Consensus 581 ~~Vtsv~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~~-~~----~~~~V~sl~~spd~~~Lasgs~Dg~I~Iwdl~tg~ 655 (917)
..|.++....+|...+ |+.+| +..++..+++..... .. ....|.++...+++..|..|+. +-+..++..+++
T Consensus 146 ~~i~~i~~d~~g~lWi-gt~~G-l~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-~Gl~~~~~~~~~ 222 (758)
T 3ott_A 146 NTIYSIIRTKDNQIYV-GTYNG-LCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-GYLFQYFPSTGQ 222 (758)
T ss_dssp SCEEEEEECTTCCEEE-EETTE-EEEEETTTTEEEEECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-EEEEEEETTTTE
T ss_pred CeEEEEEEcCCCCEEE-EeCCC-HhhCccCCCceEEecCCCccccccceeEEEEEECCCCEEEEEEC-CCCeEEcCCCCe
Confidence 4688888888887555 44444 667776655432111 11 1224778877777776666664 458888887765
Q ss_pred eeEEeccCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEEEECCC
Q psy3053 656 IVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAG 735 (917)
Q Consensus 656 ~i~~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~dG 735 (917)
...........|.++....++.+.+ |+. +-+.+++..+..-............-....|.++....+|. |-+|+..|
T Consensus 223 ~~~~~~l~~~~i~~i~~d~~g~lWi-gT~-~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~-lWiGT~~G 299 (758)
T 3ott_A 223 IKQTEAFHNNSIKSLALDGNGDLLA-GTD-NGLYVYHNDTTPLQHIIHDSRNIQSLTNNIIWNIFADQEHN-IWLGTDYG 299 (758)
T ss_dssp EEEEEEEEEEEEEEEEECTTCCEEE-EET-TEEEEECCTTSCCEEECCCTTCTTSCSCSCEEEEEECTTCC-EEEEESSS
T ss_pred EEeccCCCCCeEEEEEEcCCCCEEE-EeC-CceeEEecCCCcEEEEEcCCCCcCcCCcCeEEEEEEcCCCC-EEEEeCCc
Confidence 4322111234588888877766544 454 45778886553100000000000001234688888887776 55566667
Q ss_pred eEEEEECCCCeeeEEec----CCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCe--EEEEee--------cCCceE
Q psy3053 736 ELIIWSLENHLMTQQLS----DDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGM--QVCNKV--------FEEKLL 801 (917)
Q Consensus 736 ~I~iwDl~~~~~~~~l~----~~h~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~tg~--~i~~~~--------~~~~i~ 801 (917)
+.++.....-...... ......|.++.-..+|.+-+ |+.+| +..++..++. ...... ....|.
T Consensus 300 -l~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~D~~g~lWi-Gt~~G-l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~ 376 (758)
T 3ott_A 300 -ISLSRYNSALQFIPISQITGTGDGNQFYSLFRDSKGFYWF-GGANG-LIRFTDPAGERHDAIWYRMGDKTYPLSHNRIR 376 (758)
T ss_dssp -EEEECCCC-CEEEEHHHHSCSCCCCBEEEEEECTTCCEEE-EETTE-EEEESCTTSSCCCCEEECTTCSSSCCSCSCEE
T ss_pred -ccccccCCceeEEecccCCCCCCCceEEEEEEcCCCCEEE-eeCCc-ceeecccccccceeEEeccCCcCCCCCCCceE
Confidence 5444332211111110 11234688888877776544 45554 6666655431 111111 123588
Q ss_pred EEEEeCCCEEEEEeCCCeEEEEECCCCEEEEEEe-c-----CCCceEEEeec-CCEEEEEeCCCeEEEEECcC------C
Q psy3053 802 CLSWAGEEKVILGGALGMVYLVDLIQVQLLKQVR-A-----HKDAVLSLHFD-NCTMLVGCWDSCVVIYDVEC------G 868 (917)
Q Consensus 802 ~l~~s~~~~lv~gs~dG~I~vwdl~~~~~i~~l~-~-----h~~~V~sis~d-g~~Lasgs~DG~I~Iwdl~t------g 868 (917)
++.-+.++.+.+|+ ++-+..+|..+++...-.. . ....|.++..| ...|..|+..+-+..+|..+ +
T Consensus 377 ~i~~d~~g~lWigt-~~GL~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWigT~~~Gl~~~~~~~~~~~~~~ 455 (758)
T 3ott_A 377 HIYEDKEQQLWIAT-DGSINRYDYATRQFIHYNIVDNTGTYNTNWTYYIFEDTAGQLWISTCLGGIFVVDKHKLMQSTSG 455 (758)
T ss_dssp EEEECTTSCEEEEE-TTEEEEEETTTTEEEEEEEECCC--CBSSSEEEEEECTTSEEEEEESSSCEEEEEHHHHHHCCSS
T ss_pred EEEECCCCCEEEEe-CCcHhhcCcCCCcEEEeecCCCcCCCCCceEEEEEEcCCCCEEEEECCCceEEEccccccccCCc
Confidence 89888888899888 5679999998876543221 1 13457788554 34577787766688888653 1
Q ss_pred eEE--EEec---C-CCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcceEE
Q psy3053 869 RIV--TELA---G-HEDAISCVAWDEKRKRLISGNLVGAPKLYATEFYLLY 913 (917)
Q Consensus 869 ~~l--~~l~---~-h~~~V~slafSpdg~~LaSgs~DG~V~IWdl~~~ll~ 913 (917)
... ..+. + ....|.++...++|...+.++..+-|..++.+.....
T Consensus 456 ~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~~~t~~Gl~~~d~~~~~~~ 506 (758)
T 3ott_A 456 QYIAEQNYSVHNGLSGMFINQIIPDNEGNVWVLLYNNKGIDKINPRTREVT 506 (758)
T ss_dssp EEECSEEECGGGTCSCSCEEEEEECTTSCEEEEETTCSSEEEEETTTTEEE
T ss_pred ceecccccccccccccceeeeEEEcCCCCEEEEccCCCCcEEEeCCCCceE
Confidence 121 1211 1 1235899999999987764444555888887655443
No 282
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=97.82 E-value=0.066 Score=63.73 Aligned_cols=321 Identities=7% Similarity=-0.066 Sum_probs=171.5
Q ss_pred cceEEEEEeCCCcEEEE-EecCCceEEEeccCCceeeeeeccccceEEEEEeCCCCEEEEEec--ccEEEEEEeccCeee
Q psy3053 581 EAITAVAICGEGISVAS-VGRDAMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTMLVGCW--DSCVVIYDVECGRIV 657 (917)
Q Consensus 581 ~~Vtsv~fSpdg~~Las-gs~Dg~I~IWd~~t~~~~~~~~~~~~~V~sl~~spd~~~Lasgs~--Dg~I~Iwdl~tg~~i 657 (917)
.....+++.+.+..|+. -...+.|.+.+++...........-.....+++.|.+..|..+.+ .+.|...+++.....
T Consensus 84 ~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~ 163 (619)
T 3s94_A 84 LSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRF 163 (619)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCE
T ss_pred CCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceE
Confidence 46778999996655544 445788999998754332222233334578899997666666554 356666666543333
Q ss_pred EEeccCCCceeEEEecCCCCEEEEEE-CCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEEEECCCe
Q psy3053 658 TELAGHEDAISCVAWDEKRKRLISGS-WDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGE 736 (917)
Q Consensus 658 ~~l~~H~~~Vt~l~~spd~~~L~Sgs-~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~dG~ 736 (917)
......-.....+++++++..|+.+. ..+.|...|+....... ... +.......+++..+ .+.++-...+.
T Consensus 164 ~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~-----~~~--~~~~~P~gi~~~~~-~ly~td~~~~~ 235 (619)
T 3s94_A 164 IIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQA-----VVK--GSLPHPFALTLFED-ILYWTDWSTHS 235 (619)
T ss_dssp EEECSSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC----------------CCCEEESSS-EEEEECTTTCS
T ss_pred EEEeCCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCccEE-----EEe--CCCCCceEEEEeCC-EEEEecCCCCE
Confidence 33333345678999998767666654 45678888876542110 110 01112345666544 44444445677
Q ss_pred EEEEECCCCeeeEEecCCCC------------------------CCeEEEEE-----------ecCC-------C-----
Q psy3053 737 LIIWSLENHLMTQQLSDDIN------------------------ASVNGVLF-----------SEDG-------C----- 769 (917)
Q Consensus 737 I~iwDl~~~~~~~~l~~~h~------------------------~~V~~v~f-----------spdg-------~----- 769 (917)
|...|..+++....+..... +....+++ .|.| +
T Consensus 236 V~~~d~~tg~~~~~i~~~~~~p~~i~v~~~~~qp~~~n~C~~~ng~Cs~lCl~~~~~~~~~C~C~~g~~l~~d~~~C~~~ 315 (619)
T 3s94_A 236 ILACNKYTGEGLREIHSDIFSPMDIHAFSQQRQPNATNPCGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLENGKTCKDG 315 (619)
T ss_dssp EEEEESSSCCCCEECCSCCCCCSEEEECCGGGSCCCCCTTTTTGGGCSSEEEECSSTTSEEEECCTTCCBCTTSSCBCSS
T ss_pred EEEEECCCCcccEEEecCCCCCcEEEEEccccCCCccccccCCCCcccceEECCCCCCCceEeCCchheecccCcccCCC
Confidence 88888877654433321000 00111111 1111 1
Q ss_pred ---EEEEEeCCCeEEEEECCCCeEE-EEe--ecCCceEEEEEeC-CCEEEEEe-CCCeEEEEECCCCEEEEEEecCCCce
Q psy3053 770 ---RVLSCGNNCMLNVYDLTTGMQV-CNK--VFEEKLLCLSWAG-EEKVILGG-ALGMVYLVDLIQVQLLKQVRAHKDAV 841 (917)
Q Consensus 770 ---~L~s~s~Dg~I~iwDl~tg~~i-~~~--~~~~~i~~l~~s~-~~~lv~gs-~dG~I~vwdl~~~~~i~~l~~h~~~V 841 (917)
+|+.+ ..+.|+..++...... ... ..-..+.++++++ ++.++.+. ..+.|+.+++........+...-...
T Consensus 316 ~~~~Ll~~-~~~~i~~i~l~~~~~~~~~~~~~~l~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~~~~~~~p 394 (619)
T 3s94_A 316 ATELLLLA-RRTDLRRISLDTPDFTDIVLQLEDIRHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVTAQIAHP 394 (619)
T ss_dssp CSEEEEEE-ESSCEEEEESSSTTCCCEECCCSCCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCC
T ss_pred CceEEEEE-cccceEEEecCCCccceeEEeccccCccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCccEEEEECCCCCc
Confidence 12222 2334555555443211 011 1123467788886 45655554 46788888886543322333222333
Q ss_pred EEE--eecCCE-EEEEeCCCeEEEEECcCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeC--CCcEEEEecCcc
Q psy3053 842 LSL--HFDNCT-MLVGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGNL--VGAPKLYATEFY 910 (917)
Q Consensus 842 ~si--s~dg~~-Lasgs~DG~I~Iwdl~tg~~l~~l~~h~~~V~slafSpdg~~LaSgs~--DG~V~IWdl~~~ 910 (917)
..+ .+.++. .++-+..+.|.+.++........+...-....++++.|....|+.+.. .+.|...++++.
T Consensus 395 ~GlAvD~~~~~lY~tD~~~~~I~v~~~~G~~~~~l~~~~l~~P~~iavdp~~G~ly~tD~g~~~~I~r~~~dG~ 468 (619)
T 3s94_A 395 DGIAVDWVARNLYWTDTGTDRIEVTRLNGTMRKILISEDLEEPRAIVLDPMVGYMYWTDWGEIPKIERAALDGS 468 (619)
T ss_dssp CEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCCSEEEEEEETTTTEEEEEECSSSCEEEEEETTSC
T ss_pred CceEEecccCcEEEEeCCCCcEEEEeCCCCeEEEEEECCCCCeeeEEEEcCCCcEEEecCCCCCEEEEEccCCC
Confidence 344 543454 444456788999998754332223333456789999997555555442 356666666654
No 283
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=97.80 E-value=0.037 Score=65.93 Aligned_cols=323 Identities=8% Similarity=-0.053 Sum_probs=173.4
Q ss_pred cceEEEEEeCCCcEEEEEec-CCceEEEeccCCce-eeeeeccccceEEEEEeCCCCEE-EEEecccEEEEEEeccCeee
Q psy3053 581 EAITAVAICGEGISVASVGR-DAMLKIHSLKTGRQ-ERSAVLSSMTLSSLCILPDNCTM-LVGCWDSCVVIYDVECGRIV 657 (917)
Q Consensus 581 ~~Vtsv~fSpdg~~Lasgs~-Dg~I~IWd~~t~~~-~~~~~~~~~~V~sl~~spd~~~L-asgs~Dg~I~Iwdl~tg~~i 657 (917)
+...+++|++.+..|+.+.. .+.|..++.+.... ...+...-.....+++.+.+..| ++-...+.|.+.+++.....
T Consensus 40 ~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~~ 119 (619)
T 3s94_A 40 EDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRK 119 (619)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE
T ss_pred CceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCEE
Confidence 34678999997776665554 57788888765432 22222222456789999865544 44556789999998755433
Q ss_pred EEeccCCCceeEEEecCCCCEEEEEEC--CCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEEEE-CC
Q psy3053 658 TELAGHEDAISCVAWDEKRKRLISGSW--DCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGT-EA 734 (917)
Q Consensus 658 ~~l~~H~~~Vt~l~~spd~~~L~Sgs~--DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs-~d 734 (917)
..+...-.....|++.|.+..|+.+.. .+.|...++.... ........-.....++++++++.|..+. ..
T Consensus 120 ~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~-------~~~l~~~~~~~P~Glald~~~~~LY~aD~~~ 192 (619)
T 3s94_A 120 VLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSS-------RFIIINSEIYWPNGLTLDYEEQKLYWADAKL 192 (619)
T ss_dssp EEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCS-------CEEEECSSCSSEEEEEEETTTTEEEEEETTT
T ss_pred EEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCc-------eEEEEeCCCCCCcEEEEEccCCEEEEEeCCC
Confidence 333344456788999997666666554 3566666665431 1111112334678999999766665554 45
Q ss_pred CeEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeEEEEee------------cC-----
Q psy3053 735 GELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCNKV------------FE----- 797 (917)
Q Consensus 735 G~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~tg~~i~~~~------------~~----- 797 (917)
+.|...|+.......... .......++++..+ ...++-...+.|...|..+|+....+. +.
T Consensus 193 ~~I~~~~~dG~~~~~~~~-~~~~~P~gi~~~~~-~ly~td~~~~~V~~~d~~tg~~~~~i~~~~~~p~~i~v~~~~~qp~ 270 (619)
T 3s94_A 193 NFIHKSNLDGTNRQAVVK-GSLPHPFALTLFED-ILYWTDWSTHSILACNKYTGEGLREIHSDIFSPMDIHAFSQQRQPN 270 (619)
T ss_dssp CCEEEESSSCCEEC----------CCCEEESSS-EEEEECTTTCSEEEEESSSCCCCEECCSCCCCCSEEEECCGGGSCC
T ss_pred CeEEEecCCCCccEEEEe-CCCCCceEEEEeCC-EEEEecCCCCEEEEEECCCCcccEEEecCCCCCcEEEEEccccCCC
Confidence 778888887644332222 12223345666555 334444456778888876664322111 00
Q ss_pred -----------C-----------ceEEEEEe-----C--------CCEEEEEeCCCeEEEEECCCCEEE-EEEe-cCCCc
Q psy3053 798 -----------E-----------KLLCLSWA-----G--------EEKVILGGALGMVYLVDLIQVQLL-KQVR-AHKDA 840 (917)
Q Consensus 798 -----------~-----------~i~~l~~s-----~--------~~~lv~gs~dG~I~vwdl~~~~~i-~~l~-~h~~~ 840 (917)
. ...|.+.. + ...++.-+..+.|+..++...... ..+. ..-..
T Consensus 271 ~~n~C~~~ng~Cs~lCl~~~~~~~~~C~C~~g~~l~~d~~~C~~~~~~~Ll~~~~~~i~~i~l~~~~~~~~~~~~~~l~~ 350 (619)
T 3s94_A 271 ATNPCGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLENGKTCKDGATELLLLARRTDLRRISLDTPDFTDIVLQLEDIRH 350 (619)
T ss_dssp CCCTTTTTGGGCSSEEEECSSTTSEEEECCTTCCBCTTSSCBCSSCSEEEEEEESSCEEEEESSSTTCCCEECCCSCCSS
T ss_pred ccccccCCCCcccceEECCCCCCCceEeCCchheecccCcccCCCCceEEEEEcccceEEEecCCCccceeEEeccccCc
Confidence 0 01111111 0 011222233345555555443211 0111 11234
Q ss_pred eEEEeec--CCEEEEE-eCCCeEEEEECcCCeEEEEecCCCCCEEEEEEcCCCCEEE-EEeCCCcEEEEecCcceE
Q psy3053 841 VLSLHFD--NCTMLVG-CWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLI-SGNLVGAPKLYATEFYLL 912 (917)
Q Consensus 841 V~sis~d--g~~Lasg-s~DG~I~Iwdl~tg~~l~~l~~h~~~V~slafSpdg~~La-Sgs~DG~V~IWdl~~~ll 912 (917)
+.++.+| +..|+.+ ...+.|+.++.........+...-.....+++...+..|+ +-+..+.|.+.++++...
T Consensus 351 ~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~~~~~~~p~GlAvD~~~~~lY~tD~~~~~I~v~~~~G~~~ 426 (619)
T 3s94_A 351 AIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVTAQIAHPDGIAVDWVARNLYWTDTGTDRIEVTRLNGTMR 426 (619)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSC
T ss_pred cEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCccEEEEECCCCCcCceEEecccCcEEEEeCCCCcEEEEeCCCCeE
Confidence 5566553 3444444 4567888888875443333333334567899987555555 445667888888876643
No 284
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=97.80 E-value=0.0041 Score=70.72 Aligned_cols=231 Identities=12% Similarity=0.070 Sum_probs=136.5
Q ss_pred ceeEEEecC-CCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEEEECC-C----eEEE
Q psy3053 666 AISCVAWDE-KRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEA-G----ELII 739 (917)
Q Consensus 666 ~Vt~l~~sp-d~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~d-G----~I~i 739 (917)
....++++| ++..|+.+...+.|..+|...+ .+............++++++|+.|.++... + .+..
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~--------~v~~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~ 209 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKE--------YVSTVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYI 209 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTT--------EEEEEECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEE
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCC--------EEEEEecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEE
Confidence 467889998 4666777666688999998764 222233345668899999999966665542 2 3444
Q ss_pred EECCCCeee--EEecCCCCCCeEEEEEec-CCCEEEEEeCCCeEEEEECCCCeEEEEeec--CCceEEEEEeCCCE-EEE
Q psy3053 740 WSLENHLMT--QQLSDDINASVNGVLFSE-DGCRVLSCGNNCMLNVYDLTTGMQVCNKVF--EEKLLCLSWAGEEK-VIL 813 (917)
Q Consensus 740 wDl~~~~~~--~~l~~~h~~~V~~v~fsp-dg~~L~s~s~Dg~I~iwDl~tg~~i~~~~~--~~~i~~l~~s~~~~-lv~ 813 (917)
.+.. +... ..+. .......++++| +|.++++-..++.|..++..++........ ......+++++++. +++
T Consensus 210 ~~~~-g~~~~~~~l~--~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv 286 (430)
T 3tc9_A 210 LTRE-SGFKVITELT--KGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYI 286 (430)
T ss_dssp EEGG-GTSCSEEEEE--ECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEE
T ss_pred EeCC-Cceeeeeeec--cCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEE
Confidence 4433 2221 2222 123456788999 676666666788999999987765322222 23477899998875 444
Q ss_pred -EeCCCeEEEEECCC--CEE--EEEEecC---C-------------Cc--eEEEe--------ecCCEEEEEeCCCeEEE
Q psy3053 814 -GGALGMVYLVDLIQ--VQL--LKQVRAH---K-------------DA--VLSLH--------FDNCTMLVGCWDSCVVI 862 (917)
Q Consensus 814 -gs~dG~I~vwdl~~--~~~--i~~l~~h---~-------------~~--V~sis--------~dg~~Lasgs~DG~I~I 862 (917)
-...+.|..++... +.. ...+.+. . .+ ...+. .+|.+.++-...+.|+.
T Consensus 287 ~d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~~ 366 (430)
T 3tc9_A 287 VVVNQHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRI 366 (430)
T ss_dssp EETTTTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEEE
T ss_pred EECCCCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcEEEE
Confidence 44568899987653 222 1222221 0 01 11221 12444444455677888
Q ss_pred EECcCCeEEEEecC----C-------------CCCEEEEEEcCC-CCEEEEEeCCCcEEEEecC
Q psy3053 863 YDVECGRIVTELAG----H-------------EDAISCVAWDEK-RKRLISGNLVGAPKLYATE 908 (917)
Q Consensus 863 wdl~tg~~l~~l~~----h-------------~~~V~slafSpd-g~~LaSgs~DG~V~IWdl~ 908 (917)
++ .+|........ . -..-..++++|+ +.++++-.....|+.++++
T Consensus 367 i~-~~G~v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 429 (430)
T 3tc9_A 367 LT-PQGRVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGYE 429 (430)
T ss_dssp EC-TTSEEEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred EC-CCCcEEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEccC
Confidence 87 34654333211 0 114688999995 5555555566778887764
No 285
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=97.77 E-value=0.018 Score=63.43 Aligned_cols=224 Identities=6% Similarity=-0.115 Sum_probs=133.9
Q ss_pred ccEEEEEEeccCeeeEEeccCCCceeEEEecCCCCEEEEE-ECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEE
Q psy3053 643 DSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISG-SWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAI 721 (917)
Q Consensus 643 Dg~I~Iwdl~tg~~i~~l~~H~~~Vt~l~~spd~~~L~Sg-s~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 721 (917)
...|+..+++.......+.+ ...+.+++|++.+..|+.+ ...+.|..++..... ..............+++
T Consensus 52 ~~~I~~i~~~g~~~~~~~~~-~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~-------~~~~~~~~~~~p~glav 123 (349)
T 3v64_C 52 RIDIRQVLPHRSEYTLLLNN-LENAIALDFHHRRELVFWSDVTLDRILRANLNGSN-------VEEVVSTGLESPGGLAV 123 (349)
T ss_dssp BSCEEEECTTSCCEEEEECS-CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS-------CEEEECSSCSCCCEEEE
T ss_pred ccceEEEeCCCCeeEEeecC-CCceEEEEEeccccEEEEEeccCCceEEEecCCCC-------ceEEEeCCCCCccEEEE
Confidence 34577777766554444443 3457899999766666554 456889999987641 11111112234578999
Q ss_pred eCCCCEE-EEEECCCeEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEEe-CC-CeEEEEECCCCeEEEEee-cC
Q psy3053 722 SKDNNQL-AVGTEAGELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCG-NN-CMLNVYDLTTGMQVCNKV-FE 797 (917)
Q Consensus 722 spdg~~L-asgs~dG~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s-~D-g~I~iwDl~tg~~i~~~~-~~ 797 (917)
++.+..| ++-...+.|.+.++.......... ........++++|.+..|..+. .. +.|...++.......... .-
T Consensus 124 d~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~-~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~ 202 (349)
T 3v64_C 124 DWVHDKLYWTDSGTSRIEVANLDGAHRKVLLW-QSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHL 202 (349)
T ss_dssp ETTTTEEEEEETTTTEEEEEETTSCSCEEEEC-TTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEESCCSSC
T ss_pred ecCCCeEEEEcCCCCeEEEEcCCCCceEEEEe-CCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcEEEEECCC
Confidence 9865544 555556889999987654333332 3445678999999666655544 34 778888876433222211 22
Q ss_pred CceEEEEEeC-CCEEEEE-eCCCeEEEEECCCCEEEEEEecCCCceEEEeecCCEE-EEEeCCCeEEEEECcCCeEEEEe
Q psy3053 798 EKLLCLSWAG-EEKVILG-GALGMVYLVDLIQVQLLKQVRAHKDAVLSLHFDNCTM-LVGCWDSCVVIYDVECGRIVTEL 874 (917)
Q Consensus 798 ~~i~~l~~s~-~~~lv~g-s~dG~I~vwdl~~~~~i~~l~~h~~~V~sis~dg~~L-asgs~DG~I~Iwdl~tg~~l~~l 874 (917)
.....+++++ ++.+..+ ...+.|..+|+........+.........++.++..+ ++-...+.|..++..+|+....+
T Consensus 203 ~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~giav~~~~ly~td~~~~~V~~~~~~~G~~~~~i 282 (349)
T 3v64_C 203 FWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITVFEDSLYWTDWHTKSINSANKFTGKNQEII 282 (349)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTEEEEEETTTTEEEEEETTTCCSCEEE
T ss_pred CCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEeCCCCCceEEEEECCEEEEecCCCCeEEEEEccCCCccEEe
Confidence 3478899985 5555554 4567899999865433323333334445554444444 44445678888886666554444
Q ss_pred c
Q psy3053 875 A 875 (917)
Q Consensus 875 ~ 875 (917)
.
T Consensus 283 ~ 283 (349)
T 3v64_C 283 R 283 (349)
T ss_dssp E
T ss_pred c
Confidence 3
No 286
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=97.74 E-value=0.18 Score=61.40 Aligned_cols=316 Identities=13% Similarity=0.122 Sum_probs=177.7
Q ss_pred CcceEEEEEeCCCcEEEEEecCCceEEEeccCCceeeeeeccccceEEEEEeCCCCEEEEEecccEEEEEEeccCeeeEE
Q psy3053 580 KEAITAVAICGEGISVASVGRDAMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTMLVGCWDSCVVIYDVECGRIVTE 659 (917)
Q Consensus 580 ~~~Vtsv~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~~~~~~~~V~sl~~spd~~~Lasgs~Dg~I~Iwdl~tg~~i~~ 659 (917)
...|.++....+|. |..|+.+| +..||..+.+...........|.++.. .++ .|..|+.+ .+..++..+++....
T Consensus 62 ~~~i~~i~~d~~g~-lWigT~~G-l~~yd~~~~~f~~~~~~~~~~i~~i~~-~~g-~lWigt~~-Gl~~~~~~~~~~~~~ 136 (758)
T 3ott_A 62 NTRIYCGVIIDNTY-LYMGTDNG-ILVYNYRADRYEQPETDFPTDVRTMAL-QGD-TLWLGALN-GLYTYQLQSRKLTSF 136 (758)
T ss_dssp SSCEEEEEEETTTE-EEEEETTE-EEEEETTTTEECCCSCCCCSCEEEEEE-ETT-EEEEEETT-EEEEEETTTCCEEEE
T ss_pred CceEEEEEEcCCCc-EEEEeCCC-eEEEeCCCCEEECcccCCCceEEEEEe-cCC-cEEEEcCC-cceeEeCCCCeEEEe
Confidence 35688888887774 55555555 778898765433211112234666543 344 56666665 578888876654332
Q ss_pred ec----cCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEEEECCC
Q psy3053 660 LA----GHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAG 735 (917)
Q Consensus 660 l~----~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~dG 735 (917)
.. .....|.++....++...+ |+.+ -+..++..+......... .........|.++....++..|.+|+. +
T Consensus 137 ~~~~~~l~~~~i~~i~~d~~g~lWi-gt~~-Gl~~~~~~~~~~~~~~~~--~~~~~~~~~i~~i~~d~~~~~lWigt~-~ 211 (758)
T 3ott_A 137 DTRRNGLPNNTIYSIIRTKDNQIYV-GTYN-GLCRYIPSNGKFEGIPLP--VHSSQSNLFVNSLLEDTTRQCVWIGTE-G 211 (758)
T ss_dssp CHHHHCCSCSCEEEEEECTTCCEEE-EETT-EEEEEETTTTEEEEECCC--CCTTCSSCCEEEEEEETTTTEEEEEEE-E
T ss_pred ccCCCCcCCCeEEEEEEcCCCCEEE-EeCC-CHhhCccCCCceEEecCC--CccccccceeEEEEEECCCCEEEEEEC-C
Confidence 11 1234688888877776554 5544 477788655410000000 000001234888888887776666764 4
Q ss_pred eEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeEEEEee--------cCCceEEEEEeC
Q psy3053 736 ELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCNKV--------FEEKLLCLSWAG 807 (917)
Q Consensus 736 ~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~tg~~i~~~~--------~~~~i~~l~~s~ 807 (917)
-+..+|..+++...... .....|.++....+|.+.+ |+. +-+.+++..++....... ....|.++..+.
T Consensus 212 Gl~~~~~~~~~~~~~~~-l~~~~i~~i~~d~~g~lWi-gT~-~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~ 288 (758)
T 3ott_A 212 YLFQYFPSTGQIKQTEA-FHNNSIKSLALDGNGDLLA-GTD-NGLYVYHNDTTPLQHIIHDSRNIQSLTNNIIWNIFADQ 288 (758)
T ss_dssp EEEEEETTTTEEEEEEE-EEEEEEEEEEECTTCCEEE-EET-TEEEEECCTTSCCEEECCCTTCTTSCSCSCEEEEEECT
T ss_pred CCeEEcCCCCeEEeccC-CCCCeEEEEEEcCCCCEEE-EeC-CceeEEecCCCcEEEEEcCCCCcCcCCcCeEEEEEEcC
Confidence 58889988765432211 1234588888877776554 444 458888887654332211 123488998888
Q ss_pred CCEEEEEeCCCeEEEEECCCCEEEEEEe-----cCCCceEEEeec-CCEEEEEeCCCeEEEEECcCCe--EEEEec----
Q psy3053 808 EEKVILGGALGMVYLVDLIQVQLLKQVR-----AHKDAVLSLHFD-NCTMLVGCWDSCVVIYDVECGR--IVTELA---- 875 (917)
Q Consensus 808 ~~~lv~gs~dG~I~vwdl~~~~~i~~l~-----~h~~~V~sis~d-g~~Lasgs~DG~I~Iwdl~tg~--~l~~l~---- 875 (917)
++.+.+|+..| +.++.....-...... .....|.++..| ...|..|+.+| +..++..+++ ....+.
T Consensus 289 ~g~lWiGT~~G-l~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~D~~g~lWiGt~~G-l~~~~~~~~~~~~~~~~~~~~~ 366 (758)
T 3ott_A 289 EHNIWLGTDYG-ISLSRYNSALQFIPISQITGTGDGNQFYSLFRDSKGFYWFGGANG-LIRFTDPAGERHDAIWYRMGDK 366 (758)
T ss_dssp TCCEEEEESSS-EEEECCCC-CEEEEHHHHSCSCCCCBEEEEEECTTCCEEEEETTE-EEEESCTTSSCCCCEEECTTCS
T ss_pred CCCEEEEeCCc-ccccccCCceeEEecccCCCCCCCceEEEEEEcCCCCEEEeeCCc-ceeecccccccceeEEeccCCc
Confidence 88999999877 5444332111111111 123467777443 23355556554 6666655432 111121
Q ss_pred ---CCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcceE
Q psy3053 876 ---GHEDAISCVAWDEKRKRLISGNLVGAPKLYATEFYLL 912 (917)
Q Consensus 876 ---~h~~~V~slafSpdg~~LaSgs~DG~V~IWdl~~~ll 912 (917)
-....|.++.-..+|...+ |+ ++-+..++.++...
T Consensus 367 ~~~l~~~~v~~i~~d~~g~lWi-gt-~~GL~~~~~~~~~~ 404 (758)
T 3ott_A 367 TYPLSHNRIRHIYEDKEQQLWI-AT-DGSINRYDYATRQF 404 (758)
T ss_dssp SSCCSCSCEEEEEECTTSCEEE-EE-TTEEEEEETTTTEE
T ss_pred CCCCCCCceEEEEECCCCCEEE-Ee-CCcHhhcCcCCCcE
Confidence 0124588998888887555 44 45688888765443
No 287
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=97.70 E-value=0.0078 Score=65.73 Aligned_cols=199 Identities=15% Similarity=0.214 Sum_probs=129.5
Q ss_pred CCcEEEEEecCCceEEEeccCCceeeeeeccccceEEEEEeCC----CCE--EEE-Eec---ccEEEEEEec--cCeeeE
Q psy3053 591 EGISVASVGRDAMLKIHSLKTGRQERSAVLSSMTLSSLCILPD----NCT--MLV-GCW---DSCVVIYDVE--CGRIVT 658 (917)
Q Consensus 591 dg~~Lasgs~Dg~I~IWd~~t~~~~~~~~~~~~~V~sl~~spd----~~~--Las-gs~---Dg~I~Iwdl~--tg~~i~ 658 (917)
...++++....+-+.+||+ +|+.++.+.. ..+..+..-|+ ++. ++. ... +++|.+|+++ ++. +.
T Consensus 39 ~~s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~-l~ 114 (355)
T 3amr_A 39 QNSKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT-LQ 114 (355)
T ss_dssp GGCEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCC-EE
T ss_pred CccEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCc-ee
Confidence 4456777778889999999 7888887754 34555555552 222 333 333 5789999884 343 44
Q ss_pred Eecc------CC-CceeEEEe--cCC-CC-EEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCE
Q psy3053 659 ELAG------HE-DAISCVAW--DEK-RK-RLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQ 727 (917)
Q Consensus 659 ~l~~------H~-~~Vt~l~~--spd-~~-~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~ 727 (917)
.+.. .. ..+..+|+ ++. +. +++....+|.+..|++...... .............+.+..+...+....
T Consensus 115 ~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g-~~~~~lVR~f~lgsq~EgcvvDd~~g~ 193 (355)
T 3amr_A 115 SMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNG-YISGKKVRAFKMNSQTEGMAADDEYGR 193 (355)
T ss_dssp ECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTS-CEEEEEEEEEECSSCEEEEEEETTTTE
T ss_pred eccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCC-cccceEEEEecCCCCcceEEEcCCCCe
Confidence 4421 11 45667777 664 43 6888888999999998542111 112233444556678999999999999
Q ss_pred EEEEECCCeEEEEECC-----CCeeeEEecC-CCCCCeEEEEEe--cCCC-EEEEEe-CCCeEEEEECC-CCeEEEEe
Q psy3053 728 LAVGTEAGELIIWSLE-----NHLMTQQLSD-DINASVNGVLFS--EDGC-RVLSCG-NNCMLNVYDLT-TGMQVCNK 794 (917)
Q Consensus 728 Lasgs~dG~I~iwDl~-----~~~~~~~l~~-~h~~~V~~v~fs--pdg~-~L~s~s-~Dg~I~iwDl~-tg~~i~~~ 794 (917)
|.++-++.-|..++.+ +++.+..+.. .....+..+++- ++++ +|++++ .++++.+||.. +.+.+..+
T Consensus 194 Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~~~~vg~f 271 (355)
T 3amr_A 194 LYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGKNKYVADF 271 (355)
T ss_dssp EEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEEE
T ss_pred EEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCCCCcEEEEE
Confidence 9999999777777755 3455555432 233478888884 5555 555555 57799999996 55555444
No 288
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=97.69 E-value=0.025 Score=61.24 Aligned_cols=203 Identities=7% Similarity=-0.083 Sum_probs=123.7
Q ss_pred cceEEEEEeCCCcEEEEE-ecCCceEEEeccC---Cceeee-eeccccceEEEEEeCCCC-EEEEEecccEEEEEEeccC
Q psy3053 581 EAITAVAICGEGISVASV-GRDAMLKIHSLKT---GRQERS-AVLSSMTLSSLCILPDNC-TMLVGCWDSCVVIYDVECG 654 (917)
Q Consensus 581 ~~Vtsv~fSpdg~~Lasg-s~Dg~I~IWd~~t---~~~~~~-~~~~~~~V~sl~~spd~~-~Lasgs~Dg~I~Iwdl~tg 654 (917)
....+++|++++..|+.+ ...+.|..++..+ +..... +...-.....+++.+.+. +.++-...+.|.+.+.+..
T Consensus 30 ~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~ 109 (316)
T 1ijq_A 30 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV 109 (316)
T ss_dssp SSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSS
T ss_pred CceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCCC
Confidence 456789999876655554 4568899998875 122222 222223457888887554 4455566789999998754
Q ss_pred eeeEEeccCCCceeEEEecCCCCEEEEEECC--CeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEEEE
Q psy3053 655 RIVTELAGHEDAISCVAWDEKRKRLISGSWD--CTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGT 732 (917)
Q Consensus 655 ~~i~~l~~H~~~Vt~l~~spd~~~L~Sgs~D--gtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs 732 (917)
.....+.........++++|.+..|+.+... +.|...++.... ........-.....+++++++..|..+.
T Consensus 110 ~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~-------~~~~~~~~~~~P~gla~d~~~~~lY~~D 182 (316)
T 1ijq_A 110 KRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD-------IYSLVTENIQWPNGITLDLLSGRLYWVD 182 (316)
T ss_dssp SEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCC-------EEEEECSSCSCEEEEEEETTTTEEEEEE
T ss_pred ceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCC-------eEEEEECCCCCceEEEEeccCCEEEEEE
Confidence 4333333334567899999876666655543 678888875431 1111112234678999999877666555
Q ss_pred -CCCeEEEEECCCCeeeEEecC--CCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeEEE
Q psy3053 733 -EAGELIIWSLENHLMTQQLSD--DINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVC 792 (917)
Q Consensus 733 -~dG~I~iwDl~~~~~~~~l~~--~h~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~tg~~i~ 792 (917)
..+.|..+|+.... ...+.. ........+++. .+..+++....+.|..++..+|+...
T Consensus 183 ~~~~~I~~~d~dg~~-~~~~~~~~~~~~~P~giav~-~~~ly~~d~~~~~V~~~~~~~g~~~~ 243 (316)
T 1ijq_A 183 SKLHSISSIDVNGGN-RKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDVN 243 (316)
T ss_dssp TTTTEEEEEETTSCS-CEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCCCE
T ss_pred CCCCeEEEEecCCCc-eEEEeecCCccCCcEEEEEE-CCEEEEEECCCCeEEEEeCCCCcceE
Confidence 55789999987533 222221 123456778875 45555566667788888877665443
No 289
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=97.68 E-value=0.021 Score=63.74 Aligned_cols=231 Identities=6% Similarity=-0.113 Sum_probs=138.3
Q ss_pred EEEEEecccEEEEEEeccCeeeEEeccCCCceeEEEecCCCCEEEEE-ECCCeEEEEeCCCCCCCccCCcceeeeccCCC
Q psy3053 636 TMLVGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISG-SWDCTVRVWNTGASWSHMKPSKSLVSQLDLDN 714 (917)
Q Consensus 636 ~Lasgs~Dg~I~Iwdl~tg~~i~~l~~H~~~Vt~l~~spd~~~L~Sg-s~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~ 714 (917)
.|+.+. ...|+..++..+.......+ ...+..++|++.+..|+.+ ...+.|..++..... ..........
T Consensus 89 ~l~~~~-~~~I~~i~~~~~~~~~~~~~-~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~-------~~~~~~~~~~ 159 (386)
T 3v65_B 89 VLLFAN-RIDIRQVLPHRSEYTLLLNN-LENAIALDFHHRRELVFWSDVTLDRILRANLNGSN-------VEEVVSTGLE 159 (386)
T ss_dssp EEEEEC-BSCEEEECTTSCCCEEEECS-CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCC-------EEEEECSSCS
T ss_pred eeEeec-CccceeeccCCCcEEEEecC-CCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCC-------cEEEEeCCCC
Confidence 444333 45688888876655444443 3457899999765655544 466889999987541 1111111223
Q ss_pred ceEEEEEeCCCCEE-EEEECCCeEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEEeC-C-CeEEEEECCCCeEE
Q psy3053 715 RIKCLAISKDNNQL-AVGTEAGELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCGN-N-CMLNVYDLTTGMQV 791 (917)
Q Consensus 715 ~V~~l~~spdg~~L-asgs~dG~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~-D-g~I~iwDl~tg~~i 791 (917)
....+++++.+..| ++-...+.|.+.++........+. ........++++|.+..|..+.. . +.|..+++......
T Consensus 160 ~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~-~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~ 238 (386)
T 3v65_B 160 SPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLW-QSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRR 238 (386)
T ss_dssp CCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEEC-SSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCE
T ss_pred CccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeec-CCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcE
Confidence 45678999765544 454556789888887544333333 34467789999997666665543 3 67888887644322
Q ss_pred EEee-cCCceEEEEEeC-CCEEEEE-eCCCeEEEEECCCCEEEEEEecCCCceEEEeecCCE-EEEEeCCCeEEEEECcC
Q psy3053 792 CNKV-FEEKLLCLSWAG-EEKVILG-GALGMVYLVDLIQVQLLKQVRAHKDAVLSLHFDNCT-MLVGCWDSCVVIYDVEC 867 (917)
Q Consensus 792 ~~~~-~~~~i~~l~~s~-~~~lv~g-s~dG~I~vwdl~~~~~i~~l~~h~~~V~sis~dg~~-Lasgs~DG~I~Iwdl~t 867 (917)
.... .-.....+++++ ++.+..+ +..+.|..+|+........+.........++.++.. .++....+.|..++..+
T Consensus 239 ~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~giav~~~~ly~td~~~~~V~~~~~~~ 318 (386)
T 3v65_B 239 IIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITVFEDSLYWTDWHTKSINSANKFT 318 (386)
T ss_dssp EEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEECSSCSSEEEEEEETTEEEEEETTTTEEEEEETTT
T ss_pred EEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEECCCCCceEEEEECCEEEEeeCCCCeEEEEECCC
Confidence 2222 223467899984 4455544 456789999986543333333333445556444444 45555678888888666
Q ss_pred CeEEEEecC
Q psy3053 868 GRIVTELAG 876 (917)
Q Consensus 868 g~~l~~l~~ 876 (917)
|+.+..+..
T Consensus 319 G~~~~~i~~ 327 (386)
T 3v65_B 319 GKNQEIIRN 327 (386)
T ss_dssp CCSCEEEEC
T ss_pred CcceEEEcc
Confidence 765555543
No 290
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=97.68 E-value=0.06 Score=60.41 Aligned_cols=239 Identities=7% Similarity=-0.105 Sum_probs=144.3
Q ss_pred cccEEEEEEeccCeeeEEeccCCCceeEEEecCCCCEEEEEE-CCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEE
Q psy3053 642 WDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGS-WDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLA 720 (917)
Q Consensus 642 ~Dg~I~Iwdl~tg~~i~~l~~H~~~Vt~l~~spd~~~L~Sgs-~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~ 720 (917)
....|+..+++.......+. ....+.+++|++.+..|+.+. ..+.|..+++...... ................++
T Consensus 90 ~~~~I~~i~l~~~~~~~~~~-~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~---~~~~~~~~~~~~~p~gla 165 (400)
T 3p5b_L 90 NRHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGV---SSYDTVISRDIQAPDGLA 165 (400)
T ss_dssp ETTEEEEECTTSCSCEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEEC---------CCCEEEECSSCSCEEEEE
T ss_pred ccceeEEEccCCcceeEecc-ccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCC---CcceEEEeCCCCCcccEE
Confidence 34678888887665544443 456788999998666665554 5678888888653100 001111122345678899
Q ss_pred EeCCC-CEEEEEECCCeEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEEeC--CCeEEEEECCCCeEEEEee-c
Q psy3053 721 ISKDN-NQLAVGTEAGELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCGN--NCMLNVYDLTTGMQVCNKV-F 796 (917)
Q Consensus 721 ~spdg-~~Lasgs~dG~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~--Dg~I~iwDl~tg~~i~~~~-~ 796 (917)
+++.+ ++.++-...+.|.+.++........+. ........+++.|.+..|+.+.. .+.|...++.......... .
T Consensus 166 vD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~-~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~~~ 244 (400)
T 3p5b_L 166 VDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFR-ENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTEN 244 (400)
T ss_dssp EETTTTEEEEEETTTTEEEEECTTTCSEEEEEE-CSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEECSS
T ss_pred EEecCCceEEEECCCCeEEEEeCCCCceEEEEe-CCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEECC
Confidence 99854 455555567889999987655444333 34456789999997666665543 3678888886443322222 2
Q ss_pred CCceEEEEEeC-CCEEEEEe-CCCeEEEEECCCCEEEEEEec--CCCceEEEeecCCEE-EEEeCCCeEEEEECcCCeEE
Q psy3053 797 EEKLLCLSWAG-EEKVILGG-ALGMVYLVDLIQVQLLKQVRA--HKDAVLSLHFDNCTM-LVGCWDSCVVIYDVECGRIV 871 (917)
Q Consensus 797 ~~~i~~l~~s~-~~~lv~gs-~dG~I~vwdl~~~~~i~~l~~--h~~~V~sis~dg~~L-asgs~DG~I~Iwdl~tg~~l 871 (917)
-.....+++++ .+.+..+. ..+.|..+|+........... .-....+++.++..+ ++-...+.|..++..+|+.+
T Consensus 245 l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~~~~lywtd~~~~~V~~~~~~~G~~~ 324 (400)
T 3p5b_L 245 IQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDV 324 (400)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEEETTEEEEEESSSCSEEEEESSSCCCC
T ss_pred CCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEeCCEEEEecCCCCeEEEEEcCCCCce
Confidence 24578899984 45555554 567899999865433222222 234455665555544 45556678999997778766
Q ss_pred EEecCCCCCEEEEE
Q psy3053 872 TELAGHEDAISCVA 885 (917)
Q Consensus 872 ~~l~~h~~~V~sla 885 (917)
..+........+++
T Consensus 325 ~~i~~~~~~p~~i~ 338 (400)
T 3p5b_L 325 NLLAENLLSPEDMV 338 (400)
T ss_dssp EEEECSCSCEEEEE
T ss_pred EEEecCCCCCceEE
Confidence 65544333344443
No 291
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=97.67 E-value=0.1 Score=59.15 Aligned_cols=230 Identities=12% Similarity=0.066 Sum_probs=131.2
Q ss_pred ceeEEEecCC--CCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEEEECCC-----eEE
Q psy3053 666 AISCVAWDEK--RKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAG-----ELI 738 (917)
Q Consensus 666 ~Vt~l~~spd--~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~dG-----~I~ 738 (917)
....++|+|+ +..|+.+...+.|+.+|..++ .............+++++++|+ |.++...+ .+.
T Consensus 140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g--------~v~~~~~~~~~P~giavd~dG~-lyVad~~~~~~~~gv~ 210 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQ--------YVDIKTTNIGQCADVNFTLNGD-MVVVDDQSSDTNTGIY 210 (433)
T ss_dssp CCCEEEECTTTTTCEEEEECBTSCEEEEETTTT--------EEEEECCCCSCEEEEEECTTCC-EEEEECCSCTTSEEEE
T ss_pred CCceEEEccccCCCEEEEEeCCCCEEEEECCCC--------EEEEeecCCCCccEEEECCCCC-EEEEcCCCCcccceEE
Confidence 4568999984 455655555588999998655 2333333455689999999999 44444322 233
Q ss_pred EEECCCCee-eEEecCCCCCCeEEEEEec-CCCEEEEEeCCCeEEEEECCCCeEEEE-eec--CCceEEEEEeCCCE-EE
Q psy3053 739 IWSLENHLM-TQQLSDDINASVNGVLFSE-DGCRVLSCGNNCMLNVYDLTTGMQVCN-KVF--EEKLLCLSWAGEEK-VI 812 (917)
Q Consensus 739 iwDl~~~~~-~~~l~~~h~~~V~~v~fsp-dg~~L~s~s~Dg~I~iwDl~tg~~i~~-~~~--~~~i~~l~~s~~~~-lv 812 (917)
..+...+.. ...+. .......++++| +|.+.++-..++.|+.+|..++..... ... ......+++++++. +.
T Consensus 211 ~~~~~~~~~~~~~~~--~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LY 288 (433)
T 4hw6_A 211 LFTRASGFTERLSLC--NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAY 288 (433)
T ss_dssp EECGGGTTCCEEEEE--ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEE
T ss_pred EEECCCCeecccccc--ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEE
Confidence 333222111 01111 234456788999 676666666778899999987765222 221 22234689998764 54
Q ss_pred EE-eCCCeEEEEECC--CCEE--EEEEecC---C------------CceEEEe-----------ecCCEEEEEeCCCeEE
Q psy3053 813 LG-GALGMVYLVDLI--QVQL--LKQVRAH---K------------DAVLSLH-----------FDNCTMLVGCWDSCVV 861 (917)
Q Consensus 813 ~g-s~dG~I~vwdl~--~~~~--i~~l~~h---~------------~~V~sis-----------~dg~~Lasgs~DG~I~ 861 (917)
++ ...+.|+.++.. ++.. ...+.+. . .....+. .+|.+.++-...+.|+
T Consensus 289 vad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~ 368 (433)
T 4hw6_A 289 IIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVR 368 (433)
T ss_dssp EEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEE
T ss_pred EEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEE
Confidence 44 456889998865 2321 1122221 0 1122333 2344455555567888
Q ss_pred EEECcCCeEEEEecCC------------------CCCEEEEEEc-CCCCEEEEEeCCCcEEEEecC
Q psy3053 862 IYDVECGRIVTELAGH------------------EDAISCVAWD-EKRKRLISGNLVGAPKLYATE 908 (917)
Q Consensus 862 Iwdl~tg~~l~~l~~h------------------~~~V~slafS-pdg~~LaSgs~DG~V~IWdl~ 908 (917)
.++. +|... ++.+. -.....++++ ++|.++++=...+.|+..+++
T Consensus 369 ~~~~-~G~v~-t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 432 (433)
T 4hw6_A 369 VLTP-EGRVT-TYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAPE 432 (433)
T ss_dssp EECT-TSEEE-EEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred EECC-CCCEE-EEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence 8874 45443 33221 1236788998 566555555566778877764
No 292
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=97.66 E-value=0.016 Score=65.88 Aligned_cols=201 Identities=6% Similarity=-0.026 Sum_probs=115.7
Q ss_pred ceEEEEEeCC--CcEEEEEecCCceEEEeccCCceeeeeeccccceEEEEEeCCCCEEEEEecc---c-EEEEEEeccCe
Q psy3053 582 AITAVAICGE--GISVASVGRDAMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTMLVGCWD---S-CVVIYDVECGR 655 (917)
Q Consensus 582 ~Vtsv~fSpd--g~~Lasgs~Dg~I~IWd~~t~~~~~~~~~~~~~V~sl~~spd~~~Lasgs~D---g-~I~Iwdl~tg~ 655 (917)
.-..++++|+ +..|+.+...+.|+.++..++...... ........++++++++++++.... . .+...+...+.
T Consensus 140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~-~~~~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~~~~ 218 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKT-TNIGQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRASGF 218 (433)
T ss_dssp CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEEC-CCCSCEEEEEECTTCCEEEEECCSCTTSEEEEEECGGGTT
T ss_pred CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEee-cCCCCccEEEECCCCCEEEEcCCCCcccceEEEEECCCCe
Confidence 4568899985 445555555588999998777654433 344457899999999944443311 1 23333333221
Q ss_pred e-eEEeccCCCceeEEEecC-CCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEEE-E
Q psy3053 656 I-VTELAGHEDAISCVAWDE-KRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVG-T 732 (917)
Q Consensus 656 ~-i~~l~~H~~~Vt~l~~sp-d~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasg-s 732 (917)
. ...+. .-.....++++| ++...++-..++.|..+|..++... ... ...+.......++++|+++.|..+ .
T Consensus 219 ~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~----~~~-~~~~~~~~~~~ia~dpdG~~LYvad~ 292 (433)
T 4hw6_A 219 TERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLT----EEE-VMMDTKGSNFHIVWHPTGDWAYIIYN 292 (433)
T ss_dssp CCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEE----EEE-EECSCCSSCEEEEECTTSSEEEEEET
T ss_pred ecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEE----EEE-eccCCCCCcccEEEeCCCCEEEEEeC
Confidence 1 01111 223456788898 6666666556788999988654110 011 111122233579999999955544 4
Q ss_pred CCCeEEEEECC--CCee--eEEecC--C------------CCCCeEEEEE---------ecCCCEEEEEeCCCeEEEEEC
Q psy3053 733 EAGELIIWSLE--NHLM--TQQLSD--D------------INASVNGVLF---------SEDGCRVLSCGNNCMLNVYDL 785 (917)
Q Consensus 733 ~dG~I~iwDl~--~~~~--~~~l~~--~------------h~~~V~~v~f---------spdg~~L~s~s~Dg~I~iwDl 785 (917)
..+.|..++.. ++.. ...+.. + .-.....+++ .++|.+.++-...+.|+.++.
T Consensus 293 ~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~ 372 (433)
T 4hw6_A 293 GKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTP 372 (433)
T ss_dssp TTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECT
T ss_pred CCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECC
Confidence 56789998865 2321 111110 0 1124567888 667766666666778888885
Q ss_pred CCCeE
Q psy3053 786 TTGMQ 790 (917)
Q Consensus 786 ~tg~~ 790 (917)
+|..
T Consensus 373 -~G~v 376 (433)
T 4hw6_A 373 -EGRV 376 (433)
T ss_dssp -TSEE
T ss_pred -CCCE
Confidence 5543
No 293
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=97.65 E-value=0.2 Score=59.55 Aligned_cols=198 Identities=8% Similarity=-0.053 Sum_probs=124.9
Q ss_pred cceEEEEEeCCCcEEEEEe-cCCceEEEeccCCceeeeeeccccceEEEEEeCCCCEE-EEEecccEEEEEEeccCeeeE
Q psy3053 581 EAITAVAICGEGISVASVG-RDAMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTM-LVGCWDSCVVIYDVECGRIVT 658 (917)
Q Consensus 581 ~~Vtsv~fSpdg~~Lasgs-~Dg~I~IWd~~t~~~~~~~~~~~~~V~sl~~spd~~~L-asgs~Dg~I~Iwdl~tg~~i~ 658 (917)
..+.+++|++.+..|+.+. .++.|..+++........+.........+++.+.+..| ++-...+.|.+.+++......
T Consensus 37 ~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~ 116 (628)
T 4a0p_A 37 KEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQV 116 (628)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSTTCEE
T ss_pred CceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceEEEEeCCCEEEEEECCCCEEEEEecCCCcEEE
Confidence 3577999999766665554 57888888876544333333222346688888765544 444557889999987544333
Q ss_pred EeccCCCceeEEEecCCCCEEEEEEC--CCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEEEE-CCC
Q psy3053 659 ELAGHEDAISCVAWDEKRKRLISGSW--DCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGT-EAG 735 (917)
Q Consensus 659 ~l~~H~~~Vt~l~~spd~~~L~Sgs~--DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs-~dG 735 (917)
.+...-....++++.|....|+.+.. .+.|...++.... .......-.....++++++++.|..+. ..+
T Consensus 117 l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~--------~~~l~~~~~~P~GlalD~~~~~LY~aD~~~~ 188 (628)
T 4a0p_A 117 LVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSE--------RTTLVPNVGRANGLTIDYAKRRLYWTDLDTN 188 (628)
T ss_dssp EECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS--------CEEEECSCSSEEEEEEETTTTEEEEEETTTT
T ss_pred EEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCc--------eEEEECCCCCcceEEEccccCEEEEEECCCC
Confidence 33334456789999986666666553 4677777775541 111123345678999999877666654 457
Q ss_pred eEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCe
Q psy3053 736 ELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGM 789 (917)
Q Consensus 736 ~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~tg~ 789 (917)
.|...|+..... ..+. .......++++.. +...++-...+.|...|..+|+
T Consensus 189 ~I~~~d~dG~~~-~v~~-~~l~~P~glav~~-~~ly~tD~~~~~I~~~dk~tg~ 239 (628)
T 4a0p_A 189 LIESSNMLGLNR-EVIA-DDLPHPFGLTQYQ-DYIYWTDWSRRSIERANKTSGQ 239 (628)
T ss_dssp EEEEEETTSCSC-EEEE-ECCSCEEEEEEET-TEEEEEETTTTEEEEEETTTCC
T ss_pred EEEEEcCCCCce-EEee-ccCCCceEEEEEC-CEEEEecCCCCEEEEEECCCCC
Confidence 899999876443 3333 2234456777765 4444555557888888876654
No 294
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=97.56 E-value=0.011 Score=64.69 Aligned_cols=197 Identities=11% Similarity=0.153 Sum_probs=127.3
Q ss_pred CCEEEEEecccEEEEEEeccCeeeEEeccCCCceeEEEecCC----CC---EEEEEEC---CCeEEEEeCCCCCCCccCC
Q psy3053 634 NCTMLVGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEK----RK---RLISGSW---DCTVRVWNTGASWSHMKPS 703 (917)
Q Consensus 634 ~~~Lasgs~Dg~I~Iwdl~tg~~i~~l~~H~~~Vt~l~~spd----~~---~L~Sgs~---DgtI~vWdl~~~~~~~~~~ 703 (917)
...++.....+-+.+||+ +|+.++.+.. +.+..+..-|+ ++ ++++..+ +.+|.++++..........
T Consensus 40 ~s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~~i 116 (355)
T 3amr_A 40 NSKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQSM 116 (355)
T ss_dssp GCEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEEEC
T ss_pred ccEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCceeec
Confidence 345666666788999999 7998888864 55677766552 22 2333333 5799999774321111100
Q ss_pred cceeeeccCC-CceEEEEE--eCC-CC-EEEEEECCCeEEEEECC-------CCeeeEEecCCCCCCeEEEEEecCCCEE
Q psy3053 704 KSLVSQLDLD-NRIKCLAI--SKD-NN-QLAVGTEAGELIIWSLE-------NHLMTQQLSDDINASVNGVLFSEDGCRV 771 (917)
Q Consensus 704 ~~~~~~~~h~-~~V~~l~~--spd-g~-~Lasgs~dG~I~iwDl~-------~~~~~~~l~~~h~~~V~~v~fspdg~~L 771 (917)
.......... ..+..+|+ ++. +. ++++...+|.+..|++. +.+.++++. ..+.+..+...+....|
T Consensus 117 ~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~--lgsq~EgcvvDd~~g~L 194 (355)
T 3amr_A 117 TDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFK--MNSQTEGMAADDEYGRL 194 (355)
T ss_dssp SCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEE--CSSCEEEEEEETTTTEE
T ss_pred cccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEec--CCCCcceEEEcCCCCeE
Confidence 0000000111 55666777 674 43 67888889999999882 345667776 45688999999998999
Q ss_pred EEEeCCCeEEEEECC-----CCeEEEEeecC---CceEEEEEe--C--CCEEEEEe-CCCeEEEEECC-CCEEEEEEe
Q psy3053 772 LSCGNNCMLNVYDLT-----TGMQVCNKVFE---EKLLCLSWA--G--EEKVILGG-ALGMVYLVDLI-QVQLLKQVR 835 (917)
Q Consensus 772 ~s~s~Dg~I~iwDl~-----tg~~i~~~~~~---~~i~~l~~s--~--~~~lv~gs-~dG~I~vwdl~-~~~~i~~l~ 835 (917)
..+-++.-|..++.+ +++.+...... ..+..++.. + .+++++++ .++...+||.. +.+.+..+.
T Consensus 195 yv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~~~~vg~f~ 272 (355)
T 3amr_A 195 YIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGKNKYVADFR 272 (355)
T ss_dssp EEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEEEE
T ss_pred EEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCCCCcEEEEEE
Confidence 999999777777754 34555554332 457777774 2 24677766 46799999996 667777664
No 295
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=97.56 E-value=0.046 Score=59.32 Aligned_cols=224 Identities=9% Similarity=-0.038 Sum_probs=134.5
Q ss_pred ccEEEEEEeccCe--eeEEeccCCCceeEEEecCCCCEEE-EEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEE
Q psy3053 643 DSCVVIYDVECGR--IVTELAGHEDAISCVAWDEKRKRLI-SGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCL 719 (917)
Q Consensus 643 Dg~I~Iwdl~tg~--~i~~l~~H~~~Vt~l~~spd~~~L~-Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l 719 (917)
...|+..+++... ....+. ....+.+++|++.+..|+ +-...+.|..++...... .... ....-.....+
T Consensus 12 ~~~I~~i~l~~~~~~~~~~~~-~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~-----~~~~-~~~~l~~p~gl 84 (318)
T 3sov_A 12 RRDLRLVDATNGKENATIVVG-GLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTES-----VQNV-VVSGLLSPDGL 84 (318)
T ss_dssp EEEEEEEETTCTTSCCEEEEE-EEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSC-----CCEE-EEECCSCCCEE
T ss_pred cCeEEEEECCCCceEEEEEec-CCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCc-----eEEE-EcCCCCCccEE
Confidence 4678888887653 222222 223567899998655554 445667899998865411 0111 11122346789
Q ss_pred EEeCCCC-EEEEEECCCeEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEEeC--CCeEEEEECCCCeEEEEe-e
Q psy3053 720 AISKDNN-QLAVGTEAGELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCGN--NCMLNVYDLTTGMQVCNK-V 795 (917)
Q Consensus 720 ~~spdg~-~Lasgs~dG~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~--Dg~I~iwDl~tg~~i~~~-~ 795 (917)
++.+.+. +.++-...+.|.++++.......... ........+++.|.+..|..+.. .+.|...++......... .
T Consensus 85 avd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~-~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~ 163 (318)
T 3sov_A 85 ACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFW-QELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINS 163 (318)
T ss_dssp EEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC-SSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEECS
T ss_pred EEEcCCCeEEEEECCCCEEEEEECCCCcEEEEEe-CCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEEEC
Confidence 9997554 44555567889999987543333332 34566789999997666666552 578888887643222111 1
Q ss_pred cCCceEEEEEeC-CCEEEEE-eCCCeEEEEECCCCEEEEEEecCCCceEEEeecCCEE-EEEeCCCeEEEEECcCCeEEE
Q psy3053 796 FEEKLLCLSWAG-EEKVILG-GALGMVYLVDLIQVQLLKQVRAHKDAVLSLHFDNCTM-LVGCWDSCVVIYDVECGRIVT 872 (917)
Q Consensus 796 ~~~~i~~l~~s~-~~~lv~g-s~dG~I~vwdl~~~~~i~~l~~h~~~V~sis~dg~~L-asgs~DG~I~Iwdl~tg~~l~ 872 (917)
.-.....+++++ ++.+..+ +..+.|..+|+..........+.......++.++..+ .+-...+.|..++..+|+...
T Consensus 164 ~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~glav~~~~lywtd~~~~~V~~~~~~~G~~~~ 243 (318)
T 3sov_A 164 EIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFEDILYWTDWSTHSILACNKYTGEGLR 243 (318)
T ss_dssp SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSCCSCEEEEEEETTEEEEEETTTTEEEEEETTTCCSCE
T ss_pred CCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEecCCCCCceEEEEeCCEEEEEecCCCeEEEEECCCCCceE
Confidence 223467899986 5565554 4568899999864332222233344556665555554 444456889999987776544
Q ss_pred Ee
Q psy3053 873 EL 874 (917)
Q Consensus 873 ~l 874 (917)
.+
T Consensus 244 ~i 245 (318)
T 3sov_A 244 EI 245 (318)
T ss_dssp EE
T ss_pred EE
Confidence 44
No 296
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=97.49 E-value=0.059 Score=65.87 Aligned_cols=226 Identities=8% Similarity=-0.046 Sum_probs=139.5
Q ss_pred cCCceEEEeccCCceeeeeeccccceEEEEEeCCCCEEE-EEecccEEEEEEeccC----eeeEEeccCCCceeEEEecC
Q psy3053 600 RDAMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTML-VGCWDSCVVIYDVECG----RIVTELAGHEDAISCVAWDE 674 (917)
Q Consensus 600 ~Dg~I~IWd~~t~~~~~~~~~~~~~V~sl~~spd~~~La-sgs~Dg~I~Iwdl~tg----~~i~~l~~H~~~Vt~l~~sp 674 (917)
....|+..++........+ .....+..+++.+.+..|. +-...+.|+.+++... .....+.........|++.+
T Consensus 402 n~~~Ir~i~l~~~~~~~l~-~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~ 480 (791)
T 3m0c_C 402 NRHEVRKMTLDRSEYTSLI-PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDW 480 (791)
T ss_dssp CBSSEEEECTTSCCCEEEE-CSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEET
T ss_pred cccceeEeeccCCcceeee-cCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeee
Confidence 3456777777655433322 2334567889998555544 4455678988888753 22333443445677899987
Q ss_pred CCCEEE-EEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEEEEC--CCeEEEEECCCCeeeEEe
Q psy3053 675 KRKRLI-SGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTE--AGELIIWSLENHLMTQQL 751 (917)
Q Consensus 675 d~~~L~-Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~--dG~I~iwDl~~~~~~~~l 751 (917)
.+..|+ +-+..+.|.+.++.... ..............|+++|.+..|..+.. .+.|...++........+
T Consensus 481 ~~~~LY~tD~~~~~I~v~~ldG~~-------~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv 553 (791)
T 3m0c_C 481 IHSNIYWTDSVLGTVSVADTKGVK-------RKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLV 553 (791)
T ss_dssp TTTEEEEEETTTTEEEEEETTSSS-------EEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEE
T ss_pred cCCcEEEEecCCCeEEEEeCCCCe-------EEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEE
Confidence 665554 54567899999987541 11111223345889999998666666553 267999998754443333
Q ss_pred cCCCCCCeEEEEEecCCCEEEEEe-CCCeEEEEECCCCeEEEEeec---CCceEEEEEeCCCEEEEEeCCCeEEEEECCC
Q psy3053 752 SDDINASVNGVLFSEDGCRVLSCG-NNCMLNVYDLTTGMQVCNKVF---EEKLLCLSWAGEEKVILGGALGMVYLVDLIQ 827 (917)
Q Consensus 752 ~~~h~~~V~~v~fspdg~~L~s~s-~Dg~I~iwDl~tg~~i~~~~~---~~~i~~l~~s~~~~lv~gs~dG~I~vwdl~~ 827 (917)
. ..-.....|++++.+..|+.+. ..+.|...++........... -.....+++..+..+++-...+.|...+..+
T Consensus 554 ~-~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~~~~lYwtD~~~~~I~~~dk~t 632 (791)
T 3m0c_C 554 T-ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLT 632 (791)
T ss_dssp C-SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEETTEEEEEETTTTEEEEEETTT
T ss_pred e-CCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEeCCEEEEEECCCCEEEEEeCCC
Confidence 3 3446788999998776666664 456899999865433332222 2345677777774555556678898888877
Q ss_pred CEEEEEE
Q psy3053 828 VQLLKQV 834 (917)
Q Consensus 828 ~~~i~~l 834 (917)
++.+..+
T Consensus 633 G~~~~~l 639 (791)
T 3m0c_C 633 GSDVNLL 639 (791)
T ss_dssp CCCCEEE
T ss_pred CcceEEe
Confidence 7554444
No 297
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=97.47 E-value=0.11 Score=61.86 Aligned_cols=222 Identities=10% Similarity=-0.063 Sum_probs=140.4
Q ss_pred cCCceEEEeccCCceeeeeec-cccceEEEEEeCCCCEEEEE-ecccEEEEEEeccCeeeEEeccCCCceeEEEecCCCC
Q psy3053 600 RDAMLKIHSLKTGRQERSAVL-SSMTLSSLCILPDNCTMLVG-CWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRK 677 (917)
Q Consensus 600 ~Dg~I~IWd~~t~~~~~~~~~-~~~~V~sl~~spd~~~Lasg-s~Dg~I~Iwdl~tg~~i~~l~~H~~~Vt~l~~spd~~ 677 (917)
..+.|+..++++......+.. .-.....++|++.+..|..+ ..++.|+.++++.......+.........+++.+.+.
T Consensus 13 ~~~~I~~i~l~~~~~~~~~~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~GlAvD~~~~ 92 (628)
T 4a0p_A 13 RRADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMAVDWLGK 92 (628)
T ss_dssp ETTEEEEEESSCTTCEEECCCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTT
T ss_pred eCCcEEEEECCCCCcceEEEcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceEEEEeCCC
Confidence 567788888876544333322 22356789999876665554 4578899998876544444433334577889887655
Q ss_pred EE-EEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEEEEC--CCeEEEEECCCCeeeEEecCC
Q psy3053 678 RL-ISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTE--AGELIIWSLENHLMTQQLSDD 754 (917)
Q Consensus 678 ~L-~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~--dG~I~iwDl~~~~~~~~l~~~ 754 (917)
.| ++-...+.|.+.++.... .... ....-.....++++|....|..+.. .+.|...++..........
T Consensus 93 ~LY~tD~~~~~I~v~~~dG~~------~~~l-~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~l~~-- 163 (628)
T 4a0p_A 93 NLYWADTGTNRIEVSKLDGQH------RQVL-VWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTLVP-- 163 (628)
T ss_dssp EEEEEETTTTEEEEEETTSTT------CEEE-ECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEEC--
T ss_pred EEEEEECCCCEEEEEecCCCc------EEEE-EeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceEEEEC--
Confidence 55 444456789999986541 1111 1123345789999996666665553 5678888887554333332
Q ss_pred CCCCeEEEEEecCCCEEEEEe-CCCeEEEEECCCCeEEEEeecCCceEEEEEeCCCEEEEEeCCCeEEEEECCCCEE
Q psy3053 755 INASVNGVLFSEDGCRVLSCG-NNCMLNVYDLTTGMQVCNKVFEEKLLCLSWAGEEKVILGGALGMVYLVDLIQVQL 830 (917)
Q Consensus 755 h~~~V~~v~fspdg~~L~s~s-~Dg~I~iwDl~tg~~i~~~~~~~~i~~l~~s~~~~lv~gs~dG~I~vwdl~~~~~ 830 (917)
.......+++++++..|..+. ..+.|...|+.................+++..+..+++-...+.|...|..+++.
T Consensus 164 ~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~~v~~~~l~~P~glav~~~~ly~tD~~~~~I~~~dk~tg~~ 240 (628)
T 4a0p_A 164 NVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNREVIADDLPHPFGLTQYQDYIYWTDWSRRSIERANKTSGQN 240 (628)
T ss_dssp SCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECCSCEEEEEEETTEEEEEETTTTEEEEEETTTCCS
T ss_pred CCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCceEEeeccCCCceEEEEECCEEEEecCCCCEEEEEECCCCCc
Confidence 346788999999877766664 4678999998654332222233446678888764444555578999999876653
No 298
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=97.26 E-value=0.028 Score=61.98 Aligned_cols=226 Identities=12% Similarity=0.021 Sum_probs=118.4
Q ss_pred CceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCC---CCEEEEEEC-C-----C
Q psy3053 665 DAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKD---NNQLAVGTE-A-----G 735 (917)
Q Consensus 665 ~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd---g~~Lasgs~-d-----G 735 (917)
.....++|.|+|+.++ +..+|.|.+++ .+.. ..................++++|+ +..|.++.. . +
T Consensus 31 ~~P~~ia~~pdG~l~V-~e~~g~I~~i~--~g~~--~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~ 105 (352)
T 2ism_A 31 EVPWALAFLPDGGMLI-AERPGRIRLFR--EGRL--STYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRN 105 (352)
T ss_dssp SCEEEEEECTTSCEEE-EETTTEEEEEE--TTEE--EEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEE
T ss_pred CCceEEEEcCCCeEEE-EeCCCeEEEEE--CCCc--cEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCcc
Confidence 3567999999998554 46779999998 2210 000000011122456889999998 555544433 2 6
Q ss_pred eEEEEECCCCe-----ee-EEec--CCCCCCeEEEEEecCCCEEEEEeCC-------------CeEEEEECCCC------
Q psy3053 736 ELIIWSLENHL-----MT-QQLS--DDINASVNGVLFSEDGCRVLSCGNN-------------CMLNVYDLTTG------ 788 (917)
Q Consensus 736 ~I~iwDl~~~~-----~~-~~l~--~~h~~~V~~v~fspdg~~L~s~s~D-------------g~I~iwDl~tg------ 788 (917)
.|..++...+. .+ ..+. .........++|.|||.+.++.+.. |.|.-++....
T Consensus 106 ~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~np 185 (352)
T 2ism_A 106 QVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPGNP 185 (352)
T ss_dssp EEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTCT
T ss_pred EEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCCCc
Confidence 78888877532 11 1122 1112234689999999766664321 45555554320
Q ss_pred --------eEEEEeecCCceEEEEEeC-CCEEEEEeCCC-e--------EEEEECCC----------------CEEEEEE
Q psy3053 789 --------MQVCNKVFEEKLLCLSWAG-EEKVILGGALG-M--------VYLVDLIQ----------------VQLLKQV 834 (917)
Q Consensus 789 --------~~i~~~~~~~~i~~l~~s~-~~~lv~gs~dG-~--------I~vwdl~~----------------~~~i~~l 834 (917)
..+.... ......+++++ ++.+.++.... . |.+..... ..++..+
T Consensus 186 f~~~~~~~~~i~a~G-~rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~ 264 (352)
T 2ism_A 186 FLGRRGARPEVYSLG-HRNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRDPLYFW 264 (352)
T ss_dssp TTTCTTSCTTEEEEC-CSEECCCEECTTTCCEEEEEECC------CCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEEC
T ss_pred ccCCCCCCccEEEEc-CCCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcCCeEec
Confidence 0111111 12245677887 56666554322 1 32222110 0112222
Q ss_pred ecCCCceEEEe-ecCCEEEEEeCCCeEEEEECcCCe----E--EEEecCCCCCEEEEEEcCCCCEEEEEe
Q psy3053 835 RAHKDAVLSLH-FDNCTMLVGCWDSCVVIYDVECGR----I--VTELAGHEDAISCVAWDEKRKRLISGN 897 (917)
Q Consensus 835 ~~h~~~V~sis-~dg~~Lasgs~DG~I~Iwdl~tg~----~--l~~l~~h~~~V~slafSpdg~~LaSgs 897 (917)
..| .....+. ++|..+++....+.|...+++... . ...+......+.++++.|||.+.++..
T Consensus 265 ~~~-~ap~G~~~~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~~~ 333 (352)
T 2ism_A 265 PQG-FPPGNLAFFRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETALSGFGRLREVQVGPDGALYVTTS 333 (352)
T ss_dssp TTC-CCEEEEEEETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEESSCCEEEEEECTTSCEEEEEC
T ss_pred CCC-CCCcceEEECCEEEEEECCCCEEEEEEECCCCcceeecchheecccCCCeeEEEECCCCcEEEEEe
Confidence 112 2233443 466666655566777777765332 1 122222246789999999998777754
No 299
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=97.24 E-value=0.13 Score=56.38 Aligned_cols=99 Identities=13% Similarity=0.069 Sum_probs=60.6
Q ss_pred ceEEEEEeCCCcEEEEEecCCceEEEeccCCcee--eeee---ccccceEEEEEeCC---CCEEEEEec-c-----cEEE
Q psy3053 582 AITAVAICGEGISVASVGRDAMLKIHSLKTGRQE--RSAV---LSSMTLSSLCILPD---NCTMLVGCW-D-----SCVV 647 (917)
Q Consensus 582 ~Vtsv~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~--~~~~---~~~~~V~sl~~spd---~~~Lasgs~-D-----g~I~ 647 (917)
.-.+++|.|+|++ +.+..+|.|.+++ +++.. ..+. ........++++|+ +..|.++.. . +.|.
T Consensus 32 ~P~~ia~~pdG~l-~V~e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~ 108 (352)
T 2ism_A 32 VPWALAFLPDGGM-LIAERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVV 108 (352)
T ss_dssp CEEEEEECTTSCE-EEEETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEE
T ss_pred CceEEEEcCCCeE-EEEeCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEEE
Confidence 4568999999984 4556779999888 44321 1111 12345788999998 555554443 2 6788
Q ss_pred EEEeccCe-----e-eEEec---cCCCceeEEEecCCCCEEEEEE
Q psy3053 648 IYDVECGR-----I-VTELA---GHEDAISCVAWDEKRKRLISGS 683 (917)
Q Consensus 648 Iwdl~tg~-----~-i~~l~---~H~~~Vt~l~~spd~~~L~Sgs 683 (917)
.++...+. . ...+. +.......++|.|+|.+.++.+
T Consensus 109 r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G 153 (352)
T 2ism_A 109 RLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTG 153 (352)
T ss_dssp EEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECC
T ss_pred EEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEEC
Confidence 88877542 1 12233 1112346899999997666643
No 300
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=97.23 E-value=0.94 Score=57.68 Aligned_cols=306 Identities=13% Similarity=0.084 Sum_probs=176.2
Q ss_pred CcEEEEEecCCceEEEecc--CCceee--eeeccccceEEEEEeCCCCEEEEEecccEEEEEEeccCeeeEEeccCCCce
Q psy3053 592 GISVASVGRDAMLKIHSLK--TGRQER--SAVLSSMTLSSLCILPDNCTMLVGCWDSCVVIYDVECGRIVTELAGHEDAI 667 (917)
Q Consensus 592 g~~Lasgs~Dg~I~IWd~~--t~~~~~--~~~~~~~~V~sl~~spd~~~Lasgs~Dg~I~Iwdl~tg~~i~~l~~H~~~V 667 (917)
..+|..|-.||.+.-+.++ +|.... .......++.-..+...+..-+.+..+....++.-+ ++.... .-.-..+
T Consensus 617 ~~~L~igl~dG~l~~~~~d~~tg~l~d~r~~~LG~~pv~L~~~~~~~~~~V~a~s~rp~liy~~~-~~l~~s-~l~~~~v 694 (1158)
T 3ei3_A 617 SHYLLCALGDGALFYFGLNIETGLLSDRKKVTLGTQPTVLRTFRSLSTTNVFACSDRPTVIYSSN-HKLVFS-NVNLKEV 694 (1158)
T ss_dssp EEEEEEEETTSEEEEEEECTTTCCEEEEEEEECCSSCCEEEEEESSSCEEEEEESSSCEEEEESS-SSEEEE-EBSSSCC
T ss_pred CcEEEEEeCCCeEEEEEEcCCCCccccceeEEcCCCceEEEEEeeCCceeEEEECCCCEEEEEcC-CceEEe-ccChHHh
Confidence 3578888899988665553 444321 122233455444444444433333334444444433 332211 1111233
Q ss_pred e-EEEecCC--CCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEEEECC----------
Q psy3053 668 S-CVAWDEK--RKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEA---------- 734 (917)
Q Consensus 668 t-~l~~spd--~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~d---------- 734 (917)
. ...|+.. ..-++..+ ++.++|..+.... ............+..++++|+.+.+++++.+
T Consensus 695 ~~~~~F~se~~~~g~v~~~-~~~LrI~~i~~~~------~~~~~~ipL~~Tprri~y~~~~~~~~v~~~~~~~~~~~~~~ 767 (1158)
T 3ei3_A 695 NYMCPLNSDGYPDSLALAN-NSTLTIGTIDEIQ------KLHIRTVPLYESPRKICYQEVSQCFGVLSSRIEVQDTSGGT 767 (1158)
T ss_dssp CEEEEECCSSSTTEEEEEC-SSCEEEEEECCSS------SEEEEEEECSSEEEEEEEEGGGTEEEEEEEEEEEECSSSSE
T ss_pred ceEeccCcccCCCcEEEEc-CCceEEEEecccC------CeeEEEEeCCCCceEEEEcCCCCEEEEEEEecccccccccc
Confidence 3 3345332 23444333 5568888875431 1222233445678888888877765544311
Q ss_pred ---------------------------------------CeEEEEECCCCeeeEEecCCCCCCeEEEEEe---cC-CCEE
Q psy3053 735 ---------------------------------------GELIIWSLENHLMTQQLSDDINASVNGVLFS---ED-GCRV 771 (917)
Q Consensus 735 ---------------------------------------G~I~iwDl~~~~~~~~l~~~h~~~V~~v~fs---pd-g~~L 771 (917)
+.|++.|..+.+.+..+.-.....+.+++.- .+ ..++
T Consensus 768 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~s~i~lidp~t~~~i~~~~l~~nE~~~sv~~v~~~~~~~~~l 847 (1158)
T 3ei3_A 768 TALRPSASTQALSSSVSSSKLFSSSTAPHETSFGEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYF 847 (1158)
T ss_dssp EESSCCHHHHCSEEEECCCCCC----------CCCEEEEEEEEEEETTTCCEEEEEECCTTEEEEEEEEECCTTCCCCEE
T ss_pred chhhhhhhhhhhhhcccccccccccccCchhhcCCceeeEEEEEEeCCCCeEEEEEeCCCCcceEEEEEEEEccCCCEEE
Confidence 2466777777776665553344455555532 22 4678
Q ss_pred EEEe----------CCCeEEEEECCCCe--EEEEeecCCceEEEEEeCCCEEEEEeCCCeEEEEECCCCEEEE-EEecCC
Q psy3053 772 LSCG----------NNCMLNVYDLTTGM--QVCNKVFEEKLLCLSWAGEEKVILGGALGMVYLVDLIQVQLLK-QVRAHK 838 (917)
Q Consensus 772 ~s~s----------~Dg~I~iwDl~tg~--~i~~~~~~~~i~~l~~s~~~~lv~gs~dG~I~vwdl~~~~~i~-~l~~h~ 838 (917)
++|+ ..|.|.++++..++ .+......+.+++++--.+ ++++|- ...|++|++...+.++ ......
T Consensus 848 vVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv~~~~v~g~v~al~~~~g-~Lla~i-g~~l~vy~l~~~~~L~~~~~~~~ 925 (1158)
T 3ei3_A 848 IVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEKEVKGAVYSMVEFNG-KLLASI-NSTVRLYEWTTEKELRTECNHYN 925 (1158)
T ss_dssp EEEEEECCTTCSSCCCEEEEEEEEETTEEEEEEEEEESSCEEEEEEETT-EEEEEE-TTEEEEEEECTTSCEEEEEEECC
T ss_pred EEEeeecCCCCCCCCceEEEEEEEECCEEEEEEEEEcCCcCEEEeeeCC-EEEEEc-CCEEEEEECCCCceEEEEeeccc
Confidence 7776 35789999986543 3455667888999887655 666654 5789999998665433 111121
Q ss_pred C-ceEEEeecCCEEEEEeCCCeEEEEE--CcCCeEEEEe-cCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCc
Q psy3053 839 D-AVLSLHFDNCTMLVGCWDSCVVIYD--VECGRIVTEL-AGHEDAISCVAWDEKRKRLISGNLVGAPKLYATEF 909 (917)
Q Consensus 839 ~-~V~sis~dg~~Lasgs~DG~I~Iwd--l~tg~~l~~l-~~h~~~V~slafSpdg~~LaSgs~DG~V~IWdl~~ 909 (917)
. .+..+...++++++|..-.+|.++. ...++....- ..+...++++.+-.+ ..++.+..+|.+.+...+.
T Consensus 926 ~i~~~~l~~~~~~I~vgD~~~Sv~~~~y~~~~~~L~~~a~D~~~~~vta~~~ld~-~t~l~aD~~gNl~vl~~~~ 999 (1158)
T 3ei3_A 926 NIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWMSAVEILDD-DNFLGAENAFNLFVCQKDS 999 (1158)
T ss_dssp CSCEEEEEEETTEEEEEESSBCEEEEEEETTTTEEEEEEECCSCBCEEEEEEEET-TEEEEEETTSEEEEEEECT
T ss_pred cEEEEEEeccCCEEEEEEhhheEEEEEEEcCCCeEEEEEeecccccEEEEEEEcc-CcEEEEcCCCcEEEEecCC
Confidence 1 2345666789999998877777654 4444443322 234567888888655 4778899999999987754
No 301
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=97.22 E-value=0.0015 Score=79.30 Aligned_cols=226 Identities=8% Similarity=-0.053 Sum_probs=133.6
Q ss_pred CCceEEEeccCCceeeeeeccccceEEEEEeCCCCEEEEEe-cccEEEEEEecc----CeeeEEeccCCCceeEEEecCC
Q psy3053 601 DAMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTMLVGC-WDSCVVIYDVEC----GRIVTELAGHEDAISCVAWDEK 675 (917)
Q Consensus 601 Dg~I~IWd~~t~~~~~~~~~~~~~V~sl~~spd~~~Lasgs-~Dg~I~Iwdl~t----g~~i~~l~~H~~~Vt~l~~spd 675 (917)
.+.|+..++.+......+.. ...+..++|.+.+..|..+. ..+.|+.+++.+ ......+.........|++.+.
T Consensus 385 ~~~I~~id~~~~~~~~~~~~-~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~ 463 (699)
T 1n7d_A 385 RHEVRKMTLDRSEYTSLIPN-LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWI 463 (699)
T ss_dssp TTC-CEECTTSCCEECCSCC-CTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCS
T ss_pred ccceEEEeCCCCcceeeecc-CcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEee
Confidence 35677777766554433332 23456788998776666554 467899998875 2222222222234567888754
Q ss_pred -CCEEEEEECCCeEEEEeCCCCCCCccCCcceeeec-cCCCceEEEEEeCCCCEEEEEEC--CCeEEEEECCCCeeeEEe
Q psy3053 676 -RKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQL-DLDNRIKCLAISKDNNQLAVGTE--AGELIIWSLENHLMTQQL 751 (917)
Q Consensus 676 -~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~-~h~~~V~~l~~spdg~~Lasgs~--dG~I~iwDl~~~~~~~~l 751 (917)
++++++-...+.|.+.++.... ..... ........++++|.+..|..+.. .+.|...++.........
T Consensus 464 ~g~LY~tD~~~~~I~v~d~dg~~--------~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~ 535 (699)
T 1n7d_A 464 HSNIYWTDSVLGTVSVADTKGVK--------RKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLV 535 (699)
T ss_dssp SSBCEECCTTTSCEEEEBSSSCC--------EEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEES
T ss_pred CCcEEEEeccCCeEEEEecCCCc--------eEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEE
Confidence 4444554567889999876541 11111 12234678899987655554432 267888777643322222
Q ss_pred cCCCCCCeEEEEEecCCCEEEEE-eCCCeEEEEECCCCeEEEEeec---CCceEEEEEeCCCEEEEEeCCCeEEEEECCC
Q psy3053 752 SDDINASVNGVLFSEDGCRVLSC-GNNCMLNVYDLTTGMQVCNKVF---EEKLLCLSWAGEEKVILGGALGMVYLVDLIQ 827 (917)
Q Consensus 752 ~~~h~~~V~~v~fspdg~~L~s~-s~Dg~I~iwDl~tg~~i~~~~~---~~~i~~l~~s~~~~lv~gs~dG~I~vwdl~~ 827 (917)
. ..-.....|+++|++..|+.+ +..+.|..+++........... ......+++..+..+++....+.|..++..+
T Consensus 536 ~-~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~~lywtd~~~~~V~~~d~~~ 614 (699)
T 1n7d_A 536 T-ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLT 614 (699)
T ss_dssp C-SSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETTEEEEECSTTTCEEEEETTT
T ss_pred e-CCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCceEEEEecCCcCCCceEeEEECCEEEEEeCCCCeEEEEEccC
Confidence 2 223456789999976555544 4567899999864332222211 1234566777775666666778999999988
Q ss_pred CEEEEEEec
Q psy3053 828 VQLLKQVRA 836 (917)
Q Consensus 828 ~~~i~~l~~ 836 (917)
++.+..+..
T Consensus 615 G~~~~~i~~ 623 (699)
T 1n7d_A 615 GSDVNLLAE 623 (699)
T ss_dssp EEEEECCCT
T ss_pred CCceEEeec
Confidence 888777754
No 302
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=97.20 E-value=0.07 Score=61.30 Aligned_cols=233 Identities=14% Similarity=0.089 Sum_probs=136.3
Q ss_pred ceeEEEecC-CCCEEEEEEC-CCeEEEEeCCCCCCCccCCcceeeecc----CCCceEEEEE-------eCCCCEEEEEE
Q psy3053 666 AISCVAWDE-KRKRLISGSW-DCTVRVWNTGASWSHMKPSKSLVSQLD----LDNRIKCLAI-------SKDNNQLAVGT 732 (917)
Q Consensus 666 ~Vt~l~~sp-d~~~L~Sgs~-DgtI~vWdl~~~~~~~~~~~~~~~~~~----h~~~V~~l~~-------spdg~~Lasgs 732 (917)
....|+++| ++..|+.+.. .+.|++.|...+ .+..... .......++| +++|+.++++.
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~--------~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad 211 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNR--------MLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAI 211 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTT--------EEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEE
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCC--------EEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEe
Confidence 467899998 3455555544 467888888765 2222111 2235889999 99999676666
Q ss_pred CCC-------eEEEEECCC-Ceee-----EEecCCCCCCeEEEEEecC-CCEEEEEeCCCeEEEEECC-------CCeE-
Q psy3053 733 EAG-------ELIIWSLEN-HLMT-----QQLSDDINASVNGVLFSED-GCRVLSCGNNCMLNVYDLT-------TGMQ- 790 (917)
Q Consensus 733 ~dG-------~I~iwDl~~-~~~~-----~~l~~~h~~~V~~v~fspd-g~~L~s~s~Dg~I~iwDl~-------tg~~- 790 (917)
..+ .|.+++... +... ..+. . ......++++|+ +.++++...++.|..+|+. ++..
T Consensus 212 ~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~-~-~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~ 289 (496)
T 3kya_A 212 DYDGKGDESPSVYIIKRNADGTFDDRSDIQLIA-A-YKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSW 289 (496)
T ss_dssp CCCTTGGGEEEEEEEECCTTSCCSTTSCEEEEE-E-ESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCC
T ss_pred CCCCCcccCceEEEEecCCCCceeecccceeec-c-CCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceee
Confidence 554 266666443 2221 1221 1 123457788995 5555556677889999987 5543
Q ss_pred -------------EEEeecCCceEEEEEeCCCE-E-EEEeCCCeEEEEEC--CCCEEE--EEEecC---CC---------
Q psy3053 791 -------------VCNKVFEEKLLCLSWAGEEK-V-ILGGALGMVYLVDL--IQVQLL--KQVRAH---KD--------- 839 (917)
Q Consensus 791 -------------i~~~~~~~~i~~l~~s~~~~-l-v~gs~dG~I~vwdl--~~~~~i--~~l~~h---~~--------- 839 (917)
+...........+++++++. + ++-+....|+.++. ..+... ..+.+. .+
T Consensus 290 tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a 369 (496)
T 3kya_A 290 DPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEA 369 (496)
T ss_dssp CCBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGC
T ss_pred cccccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCccccc
Confidence 22222234467899998875 3 44456678988654 333321 222221 10
Q ss_pred ----c--eEEEe-------ecCCEEEEEeCCCeEEEEECcCCeEEEEecCC------------------------CCCEE
Q psy3053 840 ----A--VLSLH-------FDNCTMLVGCWDSCVVIYDVECGRIVTELAGH------------------------EDAIS 882 (917)
Q Consensus 840 ----~--V~sis-------~dg~~Lasgs~DG~I~Iwdl~tg~~l~~l~~h------------------------~~~V~ 882 (917)
+ ..++. .++.+.++-...+.|+.++ .+|. +.++.+. -..-.
T Consensus 370 ~f~~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~-~~G~-v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~ 447 (496)
T 3kya_A 370 RMNNPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVT-PEGI-VSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVS 447 (496)
T ss_dssp BCSSEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEEC-TTCB-EEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEE
T ss_pred ccCCCeEEEEEccccccccCCCeEEEEECCCCEEEEEe-CCCC-EEEEecccccccccCccccccCCCCchhhhhcCCCc
Confidence 1 12222 3455555556678888888 4564 3333221 12367
Q ss_pred EEEEcCC-CCEEEEEeCCCcEEEEecCcc
Q psy3053 883 CVAWDEK-RKRLISGNLVGAPKLYATEFY 910 (917)
Q Consensus 883 slafSpd-g~~LaSgs~DG~V~IWdl~~~ 910 (917)
.|+++++ |.+.++=.....|+.+++++.
T Consensus 448 gIavd~~~g~lyVaD~~N~rIrki~~~~~ 476 (496)
T 3kya_A 448 GLVYDDVKEMFYVHDQVGHTIRTISMEQE 476 (496)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEEECCC
T ss_pred EEEEECCCCEEEEEeCCCCEEEEEECCCC
Confidence 8999997 666565567788999988754
No 303
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=97.18 E-value=0.25 Score=60.39 Aligned_cols=227 Identities=7% Similarity=-0.090 Sum_probs=136.6
Q ss_pred ccEEEEEEeccCeeeEEeccCCCceeEEEecCCCCEEE-EEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEE
Q psy3053 643 DSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLI-SGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAI 721 (917)
Q Consensus 643 Dg~I~Iwdl~tg~~i~~l~~H~~~Vt~l~~spd~~~L~-Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 721 (917)
...|+..++........+. ....+.++++++.+..|+ +-...+.|..+++...... ................|++
T Consensus 403 ~~~Ir~i~l~~~~~~~l~~-~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~---~~~~~vi~~~l~~P~GLAv 478 (791)
T 3m0c_C 403 RHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGV---SSYDTVISRDIQAPDGLAV 478 (791)
T ss_dssp BSSEEEECTTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC-----------CEEEECSSCSCCCEEEE
T ss_pred ccceeEeeccCCcceeeec-CCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCC---cceeEEEecCCCCcceeee
Confidence 4557777777655444443 345678999998555555 4445678888888653100 0011111223345678999
Q ss_pred eCCCCEEE-EEECCCeEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEEeC-C-CeEEEEECCCCeEEEEeec-C
Q psy3053 722 SKDNNQLA-VGTEAGELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCGN-N-CMLNVYDLTTGMQVCNKVF-E 797 (917)
Q Consensus 722 spdg~~La-sgs~dG~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~-D-g~I~iwDl~tg~~i~~~~~-~ 797 (917)
.+.++.|. +-...+.|.+.++........+. ........|++.|.+..|+.+.. . +.|...++........... -
T Consensus 479 D~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~-~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~l 557 (791)
T 3m0c_C 479 DWIHSNIYWTDSVLGTVSVADTKGVKRKTLFR-ENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENI 557 (791)
T ss_dssp ETTTTEEEEEETTTTEEEEEETTSSSEEEEEE-CTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSC
T ss_pred eecCCcEEEEecCCCeEEEEeCCCCeEEEEEe-CCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEeCCC
Confidence 98775554 44567899999997654333333 34456889999997666666543 2 6788888865443333322 2
Q ss_pred CceEEEEEeC-CCEEEEEe-CCCeEEEEECCCCEEEEEEec--CCCceEEEeecCCEEEEEe-CCCeEEEEECcCCeEEE
Q psy3053 798 EKLLCLSWAG-EEKVILGG-ALGMVYLVDLIQVQLLKQVRA--HKDAVLSLHFDNCTMLVGC-WDSCVVIYDVECGRIVT 872 (917)
Q Consensus 798 ~~i~~l~~s~-~~~lv~gs-~dG~I~vwdl~~~~~i~~l~~--h~~~V~sis~dg~~Lasgs-~DG~I~Iwdl~tg~~l~ 872 (917)
.....+++++ .+.|+.+. ..+.|...++........+.. .-....+|+..+..|+.+. ..+.|...+..+|+.+.
T Consensus 558 ~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~~~~lYwtD~~~~~I~~~dk~tG~~~~ 637 (791)
T 3m0c_C 558 QWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVN 637 (791)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEETTEEEEEETTTTEEEEEETTTCCCCE
T ss_pred CCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEeCCEEEEEECCCCEEEEEeCCCCcceE
Confidence 4678899883 45665554 457899999865443333332 2234556666666655554 55788888877776554
Q ss_pred Ee
Q psy3053 873 EL 874 (917)
Q Consensus 873 ~l 874 (917)
.+
T Consensus 638 ~l 639 (791)
T 3m0c_C 638 LL 639 (791)
T ss_dssp EE
T ss_pred Ee
Confidence 44
No 304
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.17 E-value=0.033 Score=60.27 Aligned_cols=159 Identities=8% Similarity=-0.052 Sum_probs=105.4
Q ss_pred eEEEEEeCCCcEEEEEe-cCCceEEEeccCCceeee-eec----c--ccceEEEEE---eCCCCEEEEEec---------
Q psy3053 583 ITAVAICGEGISVASVG-RDAMLKIHSLKTGRQERS-AVL----S--SMTLSSLCI---LPDNCTMLVGCW--------- 642 (917)
Q Consensus 583 Vtsv~fSpdg~~Lasgs-~Dg~I~IWd~~t~~~~~~-~~~----~--~~~V~sl~~---spd~~~Lasgs~--------- 642 (917)
-.+++|.+....+..++ ..|+|..|+...+..... +.. . ...+..+.| .|+++++++...
T Consensus 15 PE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g~ 94 (334)
T 2p9w_A 15 PEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFADQ 94 (334)
T ss_dssp CSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTSC
T ss_pred CcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEccccccccccc
Confidence 34678887555555555 789999999875543322 211 0 113578899 588777776432
Q ss_pred ----ccEEEEEEec---cCeeeEEec--cC-----------CCceeEEEecCCCCEEEEEECC-CeEEEEeCCCCCCCcc
Q psy3053 643 ----DSCVVIYDVE---CGRIVTELA--GH-----------EDAISCVAWDEKRKRLISGSWD-CTVRVWNTGASWSHMK 701 (917)
Q Consensus 643 ----Dg~I~Iwdl~---tg~~i~~l~--~H-----------~~~Vt~l~~spd~~~L~Sgs~D-gtI~vWdl~~~~~~~~ 701 (917)
++.|..+|+. +++.+.... +. ......++..++|+.-++++.- +.|...+..... ..
T Consensus 95 ~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~~--~~ 172 (334)
T 2p9w_A 95 SSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGKT--VS 172 (334)
T ss_dssp CSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSCC--EE
T ss_pred ccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCCE--Ee
Confidence 6789999999 787665443 11 1247899999999999999888 877666654321 00
Q ss_pred CCcceeee--ccCCCceEEEEEeCCCCEEEEEECCCeEEEEECCCC
Q psy3053 702 PSKSLVSQ--LDLDNRIKCLAISKDNNQLAVGTEAGELIIWSLENH 745 (917)
Q Consensus 702 ~~~~~~~~--~~h~~~V~~l~~spdg~~Lasgs~dG~I~iwDl~~~ 745 (917)
.. .... .......+.|+++|+|+.|++....|.+..+|+.+.
T Consensus 173 ~~--~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~p 216 (334)
T 2p9w_A 173 TF--AWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKP 216 (334)
T ss_dssp EE--EECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSS
T ss_pred ee--eecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCC
Confidence 00 0000 111233679999999999988877999999998853
No 305
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=97.17 E-value=0.051 Score=57.81 Aligned_cols=231 Identities=12% Similarity=0.057 Sum_probs=121.5
Q ss_pred CCCEEEEEe-cc-----cEEEEEEeccCeeeEE--eccCCCceeEEEecCCCCEEEEEECC-----CeEEEEeCCCCCCC
Q psy3053 633 DNCTMLVGC-WD-----SCVVIYDVECGRIVTE--LAGHEDAISCVAWDEKRKRLISGSWD-----CTVRVWNTGASWSH 699 (917)
Q Consensus 633 d~~~Lasgs-~D-----g~I~Iwdl~tg~~i~~--l~~H~~~Vt~l~~spd~~~L~Sgs~D-----gtI~vWdl~~~~~~ 699 (917)
++.+++.|+ .+ ..+.+||..+++-... +........++. .++..++.|+.+ ..+.+||..+....
T Consensus 14 ~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~ 91 (301)
T 2vpj_A 14 NEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRRYVASVS--LHDRIYVIGGYDGRSRLSSVECLDYTADEDG 91 (301)
T ss_dssp CEEEEEECCEETTTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEE--ETTEEEEECCBCSSCBCCCEEEEETTCCTTC
T ss_pred CCEEEEEeCccCCCcceeEEEEEcCCCCeEEeCCCCChhhccccEEE--ECCEEEEEcCCCCCccCceEEEEECCCCCCC
Confidence 445666666 32 3688888877653321 111111112222 255677777755 46888998765200
Q ss_pred ccCCcceeeeccCCCceEEEEEeCCCCEEEEEECC-----CeEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEE
Q psy3053 700 MKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEA-----GELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSC 774 (917)
Q Consensus 700 ~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~d-----G~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~ 774 (917)
................++. .++.+++.|+.+ ..+.+||+.+.+-...-.......-.++ ..-+++.++.|
T Consensus 92 --~W~~~~~~p~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~-~~~~~~iyv~G 166 (301)
T 2vpj_A 92 --VWYSVAPMNVRRGLAGATT--LGDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGL-VVASGVIYCLG 166 (301)
T ss_dssp --CCEEECCCSSCCBSCEEEE--ETTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEE-EEETTEEEEEC
T ss_pred --eeEECCCCCCCccceeEEE--ECCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceE-EEECCEEEEEC
Confidence 0011111111111112222 257777777654 3588999887654332211111111122 22367777777
Q ss_pred eCC-----CeEEEEECCCCeEEEEeecCCc--eEEEEEeCCCEEEEEeCC-----CeEEEEECCCCEEEEE--EecCCCc
Q psy3053 775 GNN-----CMLNVYDLTTGMQVCNKVFEEK--LLCLSWAGEEKVILGGAL-----GMVYLVDLIQVQLLKQ--VRAHKDA 840 (917)
Q Consensus 775 s~D-----g~I~iwDl~tg~~i~~~~~~~~--i~~l~~s~~~~lv~gs~d-----G~I~vwdl~~~~~i~~--l~~h~~~ 840 (917)
+.+ ..+.+||+.+++-......... -.+++..++..++.|+.+ ..+.+||+.+.+-... +......
T Consensus 167 G~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~ 246 (301)
T 2vpj_A 167 GYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVALLNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCY 246 (301)
T ss_dssp CBCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBS
T ss_pred CCCCCcccceEEEEeCCCCcEEeCCCCCcccccceEEEECCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCCCcccc
Confidence 654 4588999988765443222221 223333445456666654 5789999988764432 2222222
Q ss_pred eEEEeecCCEEEEEeCC-----CeEEEEECcCCeE
Q psy3053 841 VLSLHFDNCTMLVGCWD-----SCVVIYDVECGRI 870 (917)
Q Consensus 841 V~sis~dg~~Lasgs~D-----G~I~Iwdl~tg~~ 870 (917)
..++..+++.++.|+.+ ..+.+||.++.+.
T Consensus 247 ~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W 281 (301)
T 2vpj_A 247 VGATVLRGRLYAIAGYDGNSLLSSIECYDPIIDSW 281 (301)
T ss_dssp CEEEEETTEEEEECCBCSSSBEEEEEEEETTTTEE
T ss_pred eeEEEECCEEEEEcCcCCCcccccEEEEcCCCCeE
Confidence 33445578888888765 3678888887664
No 306
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=97.13 E-value=0.19 Score=57.61 Aligned_cols=161 Identities=9% Similarity=-0.041 Sum_probs=94.3
Q ss_pred ceEEEEEeC-CCcEEEEEec-CCceEEEeccCCceeeeeecc---ccceEEEEE-------eCCCCEEEEEeccc-----
Q psy3053 582 AITAVAICG-EGISVASVGR-DAMLKIHSLKTGRQERSAVLS---SMTLSSLCI-------LPDNCTMLVGCWDS----- 644 (917)
Q Consensus 582 ~Vtsv~fSp-dg~~Lasgs~-Dg~I~IWd~~t~~~~~~~~~~---~~~V~sl~~-------spd~~~Lasgs~Dg----- 644 (917)
.-..|+|+| ++..|+.+.. .+.|++.|.+++......... ......++| ++++..|+++...+
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~ 219 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDE 219 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGG
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCccc
Confidence 356889998 3544555544 467888888776655433322 224688999 99999777766543
Q ss_pred --EEEEEEecc-Ceee-----EEeccCCCceeEEEecCC-CCEEEEEECCCeEEEEeCC-------CCCC--CccCC---
Q psy3053 645 --CVVIYDVEC-GRIV-----TELAGHEDAISCVAWDEK-RKRLISGSWDCTVRVWNTG-------ASWS--HMKPS--- 703 (917)
Q Consensus 645 --~I~Iwdl~t-g~~i-----~~l~~H~~~Vt~l~~spd-~~~L~Sgs~DgtI~vWdl~-------~~~~--~~~~~--- 703 (917)
.|.+.+... |... ..+... .....++.+|+ +.++++-..++.|..+|+. ++.. ...+.
T Consensus 220 ~~~V~~i~r~~~G~~~~~~~~~~v~~~-~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g 298 (496)
T 3kya_A 220 SPSVYIIKRNADGTFDDRSDIQLIAAY-KQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPN 298 (496)
T ss_dssp EEEEEEEECCTTSCCSTTSCEEEEEEE-SCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTT
T ss_pred CceEEEEecCCCCceeecccceeeccC-CCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeeccccccccc
Confidence 355665443 2221 222211 23457788995 4555566677889999986 3321 00000
Q ss_pred -cceeeeccCCCceEEEEEeCCCCEEEEE-ECCCeEEEEECC
Q psy3053 704 -KSLVSQLDLDNRIKCLAISKDNNQLAVG-TEAGELIIWSLE 743 (917)
Q Consensus 704 -~~~~~~~~h~~~V~~l~~spdg~~Lasg-s~dG~I~iwDl~ 743 (917)
.......+.......++++|+|+.|..+ +..+.|+.++..
T Consensus 299 ~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~d 340 (496)
T 3kya_A 299 TFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYD 340 (496)
T ss_dssp TEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred ccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecC
Confidence 0011122334456899999999965544 456788886543
No 307
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=97.11 E-value=0.14 Score=56.39 Aligned_cols=227 Identities=9% Similarity=0.005 Sum_probs=122.3
Q ss_pred CceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCC---CCEEEEEEC----C---
Q psy3053 665 DAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKD---NNQLAVGTE----A--- 734 (917)
Q Consensus 665 ~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd---g~~Lasgs~----d--- 734 (917)
.....++|.|+++ |+.+..+|.|.+++. .+. ..................++++|+ +..|.++.. +
T Consensus 29 ~~P~~ia~~pdG~-l~V~e~~g~I~~~d~-~G~---~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~ 103 (354)
T 3a9g_A 29 EVPWSIAPLGGGR-YLVTERPGRLVLISP-SGK---KLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHI 103 (354)
T ss_dssp SCEEEEEEEETTE-EEEEETTTEEEEECS-SCE---EEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCE
T ss_pred CCCeEEEEcCCCe-EEEEeCCCEEEEEeC-CCc---eEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCc
Confidence 4568999999987 555567799999973 221 000000001122356889999997 445544433 3
Q ss_pred -CeEEEEECCCC-------eee-EEecCCCCCCeEEEEEecCCCEEEEEeCC-------------CeEEEEECCCC----
Q psy3053 735 -GELIIWSLENH-------LMT-QQLSDDINASVNGVLFSEDGCRVLSCGNN-------------CMLNVYDLTTG---- 788 (917)
Q Consensus 735 -G~I~iwDl~~~-------~~~-~~l~~~h~~~V~~v~fspdg~~L~s~s~D-------------g~I~iwDl~tg---- 788 (917)
+.|..++.... +.+ ..+..........++|.|||.+.++.+.. |.|.-++....
T Consensus 104 ~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~ 183 (354)
T 3a9g_A 104 RNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPAD 183 (354)
T ss_dssp EEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTT
T ss_pred ceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCC
Confidence 56888887654 111 11221212234679999999876664431 44555554321
Q ss_pred -----eEEEEeecCCceEEEEEeC-CCEEEEEeCCC----eEEEEECCC--------C--------EEEEEEecCCCceE
Q psy3053 789 -----MQVCNKVFEEKLLCLSWAG-EEKVILGGALG----MVYLVDLIQ--------V--------QLLKQVRAHKDAVL 842 (917)
Q Consensus 789 -----~~i~~~~~~~~i~~l~~s~-~~~lv~gs~dG----~I~vwdl~~--------~--------~~i~~l~~h~~~V~ 842 (917)
..+....+ .....+++++ .+.+.++.... .|.+..... + .++..+........
T Consensus 184 npf~~~~i~a~G~-rnp~Gla~d~~~g~l~v~d~g~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~~~~~ap~ 262 (354)
T 3a9g_A 184 NPFPNSPIWSYGH-RNPQGIDWHRASGVMVATEHGPVGHDEVNIILKGGNYGWPLATGKAGRGEFVDPVIDTGSETWAPS 262 (354)
T ss_dssp SSSTTCCEEEECC-SCCCEEEECTTTCCEEEEECCSSSCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECTTCCCCEE
T ss_pred CCCCCCcEEEEcc-CCcceEEEeCCCCCEEEEecCCCCCcEEEEecCCCcCCCCcccCCCCCCCCcCCEeecCCCCcCCc
Confidence 01211111 2245678887 66666655432 233332110 0 12222211122344
Q ss_pred EEe---------ecCCEEEEEeCCCeEEEEECcCC-eEE--EEe-cCCCCCEEEEEEcCCCCEEEEEe
Q psy3053 843 SLH---------FDNCTMLVGCWDSCVVIYDVECG-RIV--TEL-AGHEDAISCVAWDEKRKRLISGN 897 (917)
Q Consensus 843 sis---------~dg~~Lasgs~DG~I~Iwdl~tg-~~l--~~l-~~h~~~V~slafSpdg~~LaSgs 897 (917)
.+. ++|.++++....+.|...++... +.. ..+ .+....+.++++.|||.+.++..
T Consensus 263 G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~v~~~pDG~lyv~~~ 330 (354)
T 3a9g_A 263 GASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFFKNVFGRLRDVVIDDDGGILISTS 330 (354)
T ss_dssp EEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEECTTTSCCEEEEEECTTSCEEEEEC
T ss_pred ceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeeccCCCCCeeEEEECCCCcEEEEEe
Confidence 443 35666666666778888888743 332 233 23346789999999998777664
No 308
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=97.11 E-value=0.42 Score=51.34 Aligned_cols=252 Identities=13% Similarity=0.099 Sum_probs=150.7
Q ss_pred ccEEEEEEeccCeeeEEeccCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEe
Q psy3053 643 DSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAIS 722 (917)
Q Consensus 643 Dg~I~Iwdl~tg~~i~~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~s 722 (917)
+.+|.|.|+.++..+..-. -..-+.-.+|..+.+|.-. ..++.++|+++. ...........|.--.|-
T Consensus 48 ~~~VvIiDl~n~~~~~Rrp---i~AdsAIMnP~~~ViALra-g~~LQiFnletK--------~klks~~~~e~VvfWkWi 115 (365)
T 2xzh_A 48 QAQVVIIDMNDPSNPIRRP---ISADSAIMNPASKVIALKA-GKTLQIFNIEMK--------SKMKAHTMTDDVTFWKWI 115 (365)
T ss_dssp EEEEEEEETTSTTSCEEEE---CCCSEEEECSSSSEEEEEE-TTEEEEEETTTT--------EEEEEEECSSCEEEEEEC
T ss_pred CCEEEEEECCCCCCccccc---cccceeeeCCCccEEEEec-CCeEEEechHHh--------hhhcceecCCccEEEEec
Confidence 3478888988765432211 1112334588888877765 789999999876 333334445677777776
Q ss_pred CCCCEEEEEECCCeEEEEECCCC-eeeEEecC---CCCCCeEEEEEecCCCEEEEEeC-------CCeEEEEECCCCeEE
Q psy3053 723 KDNNQLAVGTEAGELIIWSLENH-LMTQQLSD---DINASVNGVLFSEDGCRVLSCGN-------NCMLNVYDLTTGMQV 791 (917)
Q Consensus 723 pdg~~Lasgs~dG~I~iwDl~~~-~~~~~l~~---~h~~~V~~v~fspdg~~L~s~s~-------Dg~I~iwDl~tg~~i 791 (917)
.+. .|+..+ +..|+-|++... .+.+.+.. -....|..-..+++.++++..|- .|.+.+|+.+.+...
T Consensus 116 s~~-~L~lVT-~taVyHWs~~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~sQ 193 (365)
T 2xzh_A 116 SLN-TVALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQ 193 (365)
T ss_dssp SSS-EEEEEE-SSEEEEEESSTTCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTEEE
T ss_pred CCC-eEEEEc-CCcEEEEcccCCCCCceeeecchhcccceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeecccccc
Confidence 554 444444 347999999754 33333331 12456777888889998876652 367889998776443
Q ss_pred EEeecCCceEEEEEeCC---CEEEE-Ee---CCCeEEEEECCCC---E-----EEEEE-ec---CCCceEEE--eecCCE
Q psy3053 792 CNKVFEEKLLCLSWAGE---EKVIL-GG---ALGMVYLVDLIQV---Q-----LLKQV-RA---HKDAVLSL--HFDNCT 850 (917)
Q Consensus 792 ~~~~~~~~i~~l~~s~~---~~lv~-gs---~dG~I~vwdl~~~---~-----~i~~l-~~---h~~~V~si--s~dg~~ 850 (917)
....|......+...++ ..+++ +. ..+.+++.++... . ....+ -. ..+-..++ +..-..
T Consensus 194 ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhIiEi~~~~~~~~~f~kk~vdi~fppea~~DFPVamqvs~kygv 273 (365)
T 2xzh_A 194 PIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDV 273 (365)
T ss_dssp EECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSSCCTTCCCCCCEEEEECCCTTCTTCCEEEEEEETTTTE
T ss_pred eeeeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCCCCCCCcccccceeeCCccccCCceEEEEecccCCE
Confidence 22222111111111111 12222 11 1268888887432 1 11111 11 12333344 555667
Q ss_pred EEEEeCCCeEEEEECcCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecC
Q psy3053 851 MLVGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGNLVGAPKLYATE 908 (917)
Q Consensus 851 Lasgs~DG~I~Iwdl~tg~~l~~l~~h~~~V~slafSpdg~~LaSgs~DG~V~IWdl~ 908 (917)
+..-+.-|.|++||+++|.++..-+-..++|-.-+-+.+..-++.....|.|.--.++
T Consensus 274 iyviTK~G~ihlyDleTgt~i~~nrIS~d~iF~ta~~~~~~Gi~~Vnr~GqVl~v~v~ 331 (365)
T 2xzh_A 274 VFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVLSVCVE 331 (365)
T ss_dssp EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEEGGGTEEEEEETTCEEEEEEEC
T ss_pred EEEEeCCcEEEEEEcccCcEEEEeccCCCceEEecccCCCCcEEEEcCCCEEEEEEEC
Confidence 8889999999999999999998877667777666665555556666677777665554
No 309
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=97.08 E-value=0.049 Score=57.95 Aligned_cols=218 Identities=10% Similarity=0.036 Sum_probs=110.8
Q ss_pred CceEEEeccCCceeeeeeccccceEEEEEeCCCCEEEEEecc-----cEEEEEEeccCe---eeE--EeccCCCceeEEE
Q psy3053 602 AMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTMLVGCWD-----SCVVIYDVECGR---IVT--ELAGHEDAISCVA 671 (917)
Q Consensus 602 g~I~IWd~~t~~~~~~~~~~~~~V~sl~~spd~~~Lasgs~D-----g~I~Iwdl~tg~---~i~--~l~~H~~~Vt~l~ 671 (917)
..+.+||..+++-..............+...++.+++.|+.+ ..+.+||..+++ -.. .+........++.
T Consensus 31 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~~ 110 (301)
T 2vpj_A 31 DVVEKYDPKTQEWSFLPSITRKRRYVASVSLHDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATT 110 (301)
T ss_dssp CCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEEEE
T ss_pred eEEEEEcCCCCeEEeCCCCChhhccccEEEECCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeEEE
Confidence 357788877654322111111111122223467788888765 468899988765 222 2221111122222
Q ss_pred ecCCCCEEEEEECC-----CeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEEEECC-----CeEEEEE
Q psy3053 672 WDEKRKRLISGSWD-----CTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEA-----GELIIWS 741 (917)
Q Consensus 672 ~spd~~~L~Sgs~D-----gtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~d-----G~I~iwD 741 (917)
. ++..++.|+.+ ..+.++|..+.. ...............++. -++++++.|+.+ ..+.+||
T Consensus 111 ~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~-----W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~d 181 (301)
T 2vpj_A 111 L--GDMIYVSGGFDGSRRHTSMERYDPNIDQ-----WSMLGDMQTAREGAGLVV--ASGVIYCLGGYDGLNILNSVEKYD 181 (301)
T ss_dssp E--TTEEEEECCBCSSCBCCEEEEEETTTTE-----EEEEEECSSCCBSCEEEE--ETTEEEEECCBCSSCBCCCEEEEE
T ss_pred E--CCEEEEEcccCCCcccceEEEEcCCCCe-----EEECCCCCCCcccceEEE--ECCEEEEECCCCCCcccceEEEEe
Confidence 2 56677777654 357888876652 011111111111112222 267777887754 4588999
Q ss_pred CCCCeeeEEecCCCCCCeEEEEEecCCCEEEEEeCC-----CeEEEEECCCCeEEEEeecCC--ceEEEEEeCCCEEEEE
Q psy3053 742 LENHLMTQQLSDDINASVNGVLFSEDGCRVLSCGNN-----CMLNVYDLTTGMQVCNKVFEE--KLLCLSWAGEEKVILG 814 (917)
Q Consensus 742 l~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~D-----g~I~iwDl~tg~~i~~~~~~~--~i~~l~~s~~~~lv~g 814 (917)
+.+.+-...-.......-.++ ..-+++.++.|+.+ ..+.+||+.+.+-........ .-.+++..++..++.|
T Consensus 182 ~~~~~W~~~~~~p~~r~~~~~-~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~G 260 (301)
T 2vpj_A 182 PHTGHWTNVTPMATKRSGAGV-ALLNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCYVGATVLRGRLYAIA 260 (301)
T ss_dssp TTTTEEEEECCCSSCCBSCEE-EEETTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEEC
T ss_pred CCCCcEEeCCCCCcccccceE-EEECCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCCCcccceeEEEECCEEEEEc
Confidence 987754433221111111122 22366777777654 468999998876544322221 1222333344456666
Q ss_pred eCC-----CeEEEEECCCCE
Q psy3053 815 GAL-----GMVYLVDLIQVQ 829 (917)
Q Consensus 815 s~d-----G~I~vwdl~~~~ 829 (917)
+.+ ..+.+||..+.+
T Consensus 261 G~~~~~~~~~v~~yd~~~~~ 280 (301)
T 2vpj_A 261 GYDGNSLLSSIECYDPIIDS 280 (301)
T ss_dssp CBCSSSBEEEEEEEETTTTE
T ss_pred CcCCCcccccEEEEcCCCCe
Confidence 654 467888887664
No 310
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.04 E-value=0.099 Score=56.54 Aligned_cols=162 Identities=9% Similarity=0.109 Sum_probs=106.8
Q ss_pred eEEEEEeCCCCEEEEEe-cccEEEEEEeccCeeeEE-ecc----CC--CceeEEEe---cCCCCEEEEEE----------
Q psy3053 625 LSSLCILPDNCTMLVGC-WDSCVVIYDVECGRIVTE-LAG----HE--DAISCVAW---DEKRKRLISGS---------- 683 (917)
Q Consensus 625 V~sl~~spd~~~Lasgs-~Dg~I~Iwdl~tg~~i~~-l~~----H~--~~Vt~l~~---spd~~~L~Sgs---------- 683 (917)
-.+++|.+....+..++ ..++|..|+...+..... +.+ .. ..+..+.| .|++.++++..
T Consensus 15 PE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g~ 94 (334)
T 2p9w_A 15 PEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFADQ 94 (334)
T ss_dssp CSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTSC
T ss_pred CcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEccccccccccc
Confidence 35678988666666666 699999999986644333 322 11 13679999 68877776543
Q ss_pred ---CCCeEEEEeCC---CCCCCccCCcceeeec-c-------CCCceEEEEEeCCCCEEEEEECC-CeEEEEECCCCeee
Q psy3053 684 ---WDCTVRVWNTG---ASWSHMKPSKSLVSQL-D-------LDNRIKCLAISKDNNQLAVGTEA-GELIIWSLENHLMT 748 (917)
Q Consensus 684 ---~DgtI~vWdl~---~~~~~~~~~~~~~~~~-~-------h~~~V~~l~~spdg~~Lasgs~d-G~I~iwDl~~~~~~ 748 (917)
.+..|..+|+. ++...... .+.... + .......++..++|+..++++.. +.|...+.......
T Consensus 95 ~~~g~~~v~~~Dl~~~~tg~~~~~~--dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~~~~ 172 (334)
T 2p9w_A 95 SSHGASSFHSFNLPLSENSKPVWSV--NFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGKTVS 172 (334)
T ss_dssp CSSSCCEEEEEESSCCTTCCCSEEE--ESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSCCEE
T ss_pred ccCCCCEEEEEcCCcCCCCCEEEEe--cCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCCEEe
Confidence 26789999988 44211100 000000 0 12347899999999999999988 88888887654322
Q ss_pred EE-ecC---CCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCC
Q psy3053 749 QQ-LSD---DINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTG 788 (917)
Q Consensus 749 ~~-l~~---~h~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~tg 788 (917)
.- +.. ......+.++++|+|..|++....|.+..+|+.+.
T Consensus 173 ~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~p 216 (334)
T 2p9w_A 173 TFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKP 216 (334)
T ss_dssp EEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSS
T ss_pred eeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCC
Confidence 11 111 12234679999999999999888999999998753
No 311
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=96.96 E-value=0.57 Score=50.37 Aligned_cols=254 Identities=13% Similarity=0.139 Sum_probs=150.6
Q ss_pred CceEEEeccCCceeeeeeccccceEEEEEeCCCCEEEEEecccEEEEEEeccCeeeEEeccCCCceeEEEecCCCCEEEE
Q psy3053 602 AMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTMLVGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLIS 681 (917)
Q Consensus 602 g~I~IWd~~t~~~~~~~~~~~~~V~sl~~spd~~~Lasgs~Dg~I~Iwdl~tg~~i~~l~~H~~~Vt~l~~spd~~~L~S 681 (917)
..|.|-|+.++....+-.. ..-+.-.+|..+.+|.-. ..++.++|+++...++...- ...|.--.|-.+ +.|+-
T Consensus 49 ~~VvIiDl~n~~~~~Rrpi---~AdsAIMnP~~~ViALra-g~~LQiFnletK~klks~~~-~e~VvfWkWis~-~~L~l 122 (365)
T 2xzh_A 49 AQVVIIDMNDPSNPIRRPI---SADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTM-TDDVTFWKWISL-NTVAL 122 (365)
T ss_dssp EEEEEEETTSTTSCEEEEC---CCSEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEEC-SSCEEEEEECSS-SEEEE
T ss_pred CEEEEEECCCCCCcccccc---ccceeeeCCCccEEEEec-CCeEEEechHHhhhhcceec-CCccEEEEecCC-CeEEE
Confidence 3688888887655422221 123445789888888765 78899999999988877764 456777778643 55555
Q ss_pred EECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEEEEC-------CCeEEEEECCCCeeeEEecCC
Q psy3053 682 GSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTE-------AGELIIWSLENHLMTQQLSDD 754 (917)
Q Consensus 682 gs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~-------dG~I~iwDl~~~~~~~~l~~~ 754 (917)
.+ +..|.-|++.......+-. ...... ....|..-..+++.++++..+- .|.+.+|+.+.+. .+.+. +
T Consensus 123 VT-~taVyHWs~~~~s~P~kvF-dR~~~L-~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~-sQ~ie-G 197 (365)
T 2xzh_A 123 VT-DNAVYHWSMEGESQPVKMF-DRHSSL-AGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV-SQPIE-G 197 (365)
T ss_dssp EE-SSEEEEEESSTTCCCEEEE-ECCGGG-TTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTE-EEEEC-C
T ss_pred Ec-CCcEEEEcccCCCCCceee-ecchhc-ccceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeecccc-cceee-e
Confidence 55 5689999987631110000 000011 2466777888888887765432 3778899987653 33333 4
Q ss_pred CCCCeEEEEEec--C-CCEEEEEeC---CCeEEEEECCCC---e-----EEEEeec-----CCceEEEEEeC-CCEEEEE
Q psy3053 755 INASVNGVLFSE--D-GCRVLSCGN---NCMLNVYDLTTG---M-----QVCNKVF-----EEKLLCLSWAG-EEKVILG 814 (917)
Q Consensus 755 h~~~V~~v~fsp--d-g~~L~s~s~---Dg~I~iwDl~tg---~-----~i~~~~~-----~~~i~~l~~s~-~~~lv~g 814 (917)
|.+.-..+.+.. . ...++.+.. .+.+++-++... . ......+ ..-..++..++ .+.+..-
T Consensus 198 haa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhIiEi~~~~~~~~~f~kk~vdi~fppea~~DFPVamqvs~kygviyvi 277 (365)
T 2xzh_A 198 HAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLI 277 (365)
T ss_dssp SEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSSCCTTCCCCCCEEEEECCCTTCTTCCEEEEEEETTTTEEEEE
T ss_pred eeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCCCCCCCcccccceeeCCccccCCceEEEEecccCCEEEEE
Confidence 433322222111 1 112232222 258899888432 1 1111111 12245666664 5678889
Q ss_pred eCCCeEEEEECCCCEEEEEEecCCCceEEEee--cCCEEEEEeCCCeEEEEECc
Q psy3053 815 GALGMVYLVDLIQVQLLKQVRAHKDAVLSLHF--DNCTMLVGCWDSCVVIYDVE 866 (917)
Q Consensus 815 s~dG~I~vwdl~~~~~i~~l~~h~~~V~sis~--dg~~Lasgs~DG~I~Iwdl~ 866 (917)
+.-|.+++||+.++.++..-+-....|..-++ +..-+++....|.|.--.++
T Consensus 278 TK~G~ihlyDleTgt~i~~nrIS~d~iF~ta~~~~~~Gi~~Vnr~GqVl~v~v~ 331 (365)
T 2xzh_A 278 TKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVLSVCVE 331 (365)
T ss_dssp ETTSEEEEEETTTCCEEEEEECCSSCEEEEEEEGGGTEEEEEETTCEEEEEEEC
T ss_pred eCCcEEEEEEcccCcEEEEeccCCCceEEecccCCCCcEEEEcCCCEEEEEEEC
Confidence 99999999999999999887766666654433 33445555566665554443
No 312
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=96.91 E-value=0.085 Score=56.13 Aligned_cols=149 Identities=15% Similarity=0.120 Sum_probs=75.7
Q ss_pred CCCEEEEEecc-----cEEEEEEeccCeeeEE--eccCCCceeEEEecCCCCEEEEEECCC-----eEEEEeCCCCCCCc
Q psy3053 633 DNCTMLVGCWD-----SCVVIYDVECGRIVTE--LAGHEDAISCVAWDEKRKRLISGSWDC-----TVRVWNTGASWSHM 700 (917)
Q Consensus 633 d~~~Lasgs~D-----g~I~Iwdl~tg~~i~~--l~~H~~~Vt~l~~spd~~~L~Sgs~Dg-----tI~vWdl~~~~~~~ 700 (917)
++.+++.|+.+ ..+.+||..+.+-... +........++.+ ++..++.|+.++ .+.+||..+..-.
T Consensus 61 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~- 137 (302)
T 2xn4_A 61 AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAVL--NGLLYAVGGFDGSTGLSSVEAYNIKSNEWF- 137 (302)
T ss_dssp TTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEEEEECSSCEEEEEEEEETTTTEEE-
T ss_pred CCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEEEE--CCEEEEEcCCCCCccCceEEEEeCCCCeEe-
Confidence 67788888765 3588899887653322 2111111222222 567777777653 5778887665210
Q ss_pred cCCcceeeeccCCCceEEEEEeCCCCEEEEEECC-------CeEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEE
Q psy3053 701 KPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEA-------GELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLS 773 (917)
Q Consensus 701 ~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~d-------G~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s 773 (917)
............ +++. -++.+++.|+.+ ..+.+||+.+.+-...-.......-.+++ .-+++.++.
T Consensus 138 ----~~~~~p~~r~~~-~~~~-~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~-~~~~~iyv~ 210 (302)
T 2xn4_A 138 ----HVAPMNTRRSSV-GVGV-VGGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVG-VLNNLLYAV 210 (302)
T ss_dssp ----EECCCSSCCBSC-EEEE-ETTEEEEECCEETTTTEECCCEEEEETTTTEEEEECCCSSCCBSCEEE-EETTEEEEE
T ss_pred ----ecCCCCCcccCc-eEEE-ECCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCccccccccEE-EECCEEEEE
Confidence 000000111111 2222 256777776543 35889999877543322111111111222 225667777
Q ss_pred EeCC-----CeEEEEECCCCeEE
Q psy3053 774 CGNN-----CMLNVYDLTTGMQV 791 (917)
Q Consensus 774 ~s~D-----g~I~iwDl~tg~~i 791 (917)
|+.+ ..+.+||..+++-.
T Consensus 211 GG~~~~~~~~~~~~yd~~~~~W~ 233 (302)
T 2xn4_A 211 GGHDGPLVRKSVEVYDPTTNAWR 233 (302)
T ss_dssp CCBSSSSBCCCEEEEETTTTEEE
T ss_pred CCCCCCcccceEEEEeCCCCCEe
Confidence 7654 35778887776543
No 313
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=96.86 E-value=0.33 Score=53.20 Aligned_cols=237 Identities=12% Similarity=0.096 Sum_probs=125.3
Q ss_pred CceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCccee-eeccCCCceEEEEEeCC---CCEEEEE-EC------
Q psy3053 665 DAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLV-SQLDLDNRIKCLAISKD---NNQLAVG-TE------ 733 (917)
Q Consensus 665 ~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~-~~~~h~~~V~~l~~spd---g~~Lasg-s~------ 733 (917)
...+.|+|.|+|+.|+.+...|.|.+++....... ...... ...........++++|+ +..|.++ +.
T Consensus 18 ~~P~~i~~~pdG~~l~V~e~~G~i~~~~~~g~~~~--~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~ 95 (353)
T 2g8s_A 18 DHPWALAFLPDNHGMLITLRGGELRHWQAGKGLSA--PLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGK 95 (353)
T ss_dssp SSEEEEEECSTTCCEEEEETTTEEEEEETTTEECC--CCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSC
T ss_pred CCcEEEEEcCCCCEEEEEeCCceEEEEeCCCceee--EecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCC
Confidence 34689999999983445567899999985322110 000000 01122345789999996 4444443 22
Q ss_pred -CCeEEEEECCCC----eeeEEe----cC--CCCCCeEEEEEecCCCEEEEEeCC-------------CeEEEEECCCC-
Q psy3053 734 -AGELIIWSLENH----LMTQQL----SD--DINASVNGVLFSEDGCRVLSCGNN-------------CMLNVYDLTTG- 788 (917)
Q Consensus 734 -dG~I~iwDl~~~----~~~~~l----~~--~h~~~V~~v~fspdg~~L~s~s~D-------------g~I~iwDl~tg- 788 (917)
...|..+++... .....+ .. ........++|.|||.+.++.+.. |.|.-++....
T Consensus 96 ~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~ 175 (353)
T 2g8s_A 96 AGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGEI 175 (353)
T ss_dssp EEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSCC
T ss_pred ceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCCC
Confidence 235666766533 111111 10 111224579999999665555432 45666665422
Q ss_pred -------------eEEEEeecCCceEEEEEeC-CCEEEEEeCCC----eEEEEEC--------CC---------------
Q psy3053 789 -------------MQVCNKVFEEKLLCLSWAG-EEKVILGGALG----MVYLVDL--------IQ--------------- 827 (917)
Q Consensus 789 -------------~~i~~~~~~~~i~~l~~s~-~~~lv~gs~dG----~I~vwdl--------~~--------------- 827 (917)
..+... .......++|++ .+.+.++.... .|.+... ..
T Consensus 176 p~~npf~~~~~~~~~i~a~-G~rnp~gl~~d~~~g~l~~~d~g~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~~~~~~~ 254 (353)
T 2g8s_A 176 PDDNPFIKESGVRAEIWSY-GIRNPQGMAMNPWSNALWLNEHGPRGGDEINIPQKGKNYGWPLATWGINYSGFKIPEAKG 254 (353)
T ss_dssp CTTCTTTTSTTSCTTEEEE-CCSEEEEEEEETTTTEEEEEEECSBSCEEEECCCTTCBCCTTTBCSSBCTTSSCCTTCCB
T ss_pred CCCCCCcCCCCCCccEEEE-cCcCccceEEECCCCCEEEEecCCCCCcEEeEeccCCcCCCCCccCCCCCCCCccCcccC
Confidence 011111 112367788998 67777765432 2222110 00
Q ss_pred ------CEEEEEEecCCCceEEEee---------cCCEEEEEeCCCeEEEEECcCCeEEEE--e-cCCCCCEEEEEEcCC
Q psy3053 828 ------VQLLKQVRAHKDAVLSLHF---------DNCTMLVGCWDSCVVIYDVECGRIVTE--L-AGHEDAISCVAWDEK 889 (917)
Q Consensus 828 ------~~~i~~l~~h~~~V~sis~---------dg~~Lasgs~DG~I~Iwdl~tg~~l~~--l-~~h~~~V~slafSpd 889 (917)
..++..+..| .....+.+ +|.++++....+.|...+++.++.... + ......+..+++.||
T Consensus 255 ~~~~~~~~P~~~~~~~-~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pd 333 (353)
T 2g8s_A 255 EIVAGTEQPVFYWKDS-PAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRTGPD 333 (353)
T ss_dssp SSCTTSCCCSEEESSC-CCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEEECTT
T ss_pred CCCCCccCCeEEeCCC-cCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEEECCC
Confidence 0011122222 23444422 466777766778888888876654432 2 222357999999999
Q ss_pred CCEEEEEe-CCCcEEEEec
Q psy3053 890 RKRLISGN-LVGAPKLYAT 907 (917)
Q Consensus 890 g~~LaSgs-~DG~V~IWdl 907 (917)
|.+.++.. .+| +||.+
T Consensus 334 G~lyv~td~~~g--~I~ri 350 (353)
T 2g8s_A 334 GYLYVLTDESSG--ELLKV 350 (353)
T ss_dssp SCEEEEECSTTE--EEEEE
T ss_pred CcEEEEEeCCCC--EEEEE
Confidence 98666543 344 45554
No 314
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=96.83 E-value=0.096 Score=55.73 Aligned_cols=185 Identities=14% Similarity=0.058 Sum_probs=103.6
Q ss_pred CCCEEEEEECC-----CeEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEEeCCC-----eEEEEECCCCeEEEE
Q psy3053 724 DNNQLAVGTEA-----GELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCGNNC-----MLNVYDLTTGMQVCN 793 (917)
Q Consensus 724 dg~~Lasgs~d-----G~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~Dg-----~I~iwDl~tg~~i~~ 793 (917)
++.+++.|+.+ ..+.+||..+.+-...-.......-.+++ .-+++.++.|+.++ .+.+||+.+.+-...
T Consensus 61 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~ 139 (302)
T 2xn4_A 61 AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAA-VLNGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHV 139 (302)
T ss_dssp TTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEE-EETTEEEEEEEECSSCEEEEEEEEETTTTEEEEE
T ss_pred CCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEE-EECCEEEEEcCCCCCccCceEEEEeCCCCeEeec
Confidence 66777777754 35889998877543322211111111222 23677777777553 578899888765443
Q ss_pred eecCCc--eEEEEEeCCCEEEEEeC-------CCeEEEEECCCCEEEEE--EecCCCceEEEeecCCEEEEEeCC-----
Q psy3053 794 KVFEEK--LLCLSWAGEEKVILGGA-------LGMVYLVDLIQVQLLKQ--VRAHKDAVLSLHFDNCTMLVGCWD----- 857 (917)
Q Consensus 794 ~~~~~~--i~~l~~s~~~~lv~gs~-------dG~I~vwdl~~~~~i~~--l~~h~~~V~sis~dg~~Lasgs~D----- 857 (917)
.....+ -.+++...+..++.|+. ...+.+||..+.+-... +........++..++++++.|+.+
T Consensus 140 ~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~ 219 (302)
T 2xn4_A 140 APMNTRRSSVGVGVVGGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVGVLNNLLYAVGGHDGPLVR 219 (302)
T ss_dssp CCCSSCCBSCEEEEETTEEEEECCEETTTTEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCBSSSSBC
T ss_pred CCCCCcccCceEEEECCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCccccccccEEEECCEEEEECCCCCCccc
Confidence 222221 22333334435556553 24588999988764432 222222233445678888888765
Q ss_pred CeEEEEECcCCeEEEEecCCC--CCEEEEEEcCCCCEEEEEeCCC-----cEEEEecCcce
Q psy3053 858 SCVVIYDVECGRIVTELAGHE--DAISCVAWDEKRKRLISGNLVG-----APKLYATEFYL 911 (917)
Q Consensus 858 G~I~Iwdl~tg~~l~~l~~h~--~~V~slafSpdg~~LaSgs~DG-----~V~IWdl~~~l 911 (917)
..+.+||..+.+....-.... ..-..+. .+++.++.||.++ .+.+||.+...
T Consensus 220 ~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 278 (302)
T 2xn4_A 220 KSVEVYDPTTNAWRQVADMNMCRRNAGVCA--VNGLLYVVGGDDGSCNLASVEYYNPTTDK 278 (302)
T ss_dssp CCEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEECCBCSSSBCCCEEEEETTTTE
T ss_pred ceEEEEeCCCCCEeeCCCCCCccccCeEEE--ECCEEEEECCcCCCcccccEEEEcCCCCe
Confidence 368899998876543321111 1112222 2677778887654 48888887543
No 315
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=96.81 E-value=0.0084 Score=72.59 Aligned_cols=207 Identities=9% Similarity=-0.064 Sum_probs=120.2
Q ss_pred cceEEEEEeCCCcEEEEEe-cCCceEEEeccC----CceeeeeeccccceEEEEEeCC-CCEEEEEecccEEEEEEeccC
Q psy3053 581 EAITAVAICGEGISVASVG-RDAMLKIHSLKT----GRQERSAVLSSMTLSSLCILPD-NCTMLVGCWDSCVVIYDVECG 654 (917)
Q Consensus 581 ~~Vtsv~fSpdg~~Lasgs-~Dg~I~IWd~~t----~~~~~~~~~~~~~V~sl~~spd-~~~Lasgs~Dg~I~Iwdl~tg 654 (917)
..+.+++|++.+..|+.+. ..+.|..+++.+ ......+.........+++.+. ++++++-...+.|.+++++..
T Consensus 406 ~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~ 485 (699)
T 1n7d_A 406 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV 485 (699)
T ss_dssp TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSC
T ss_pred cceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCC
Confidence 3466889998776666554 457888888875 2222222111223456777754 444455456788999998765
Q ss_pred eeeEEeccCCCceeEEEecCCCCEEEEEEC-C-CeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEEE-
Q psy3053 655 RIVTELAGHEDAISCVAWDEKRKRLISGSW-D-CTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVG- 731 (917)
Q Consensus 655 ~~i~~l~~H~~~Vt~l~~spd~~~L~Sgs~-D-gtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasg- 731 (917)
.....+.........++++|.+..|+.+.. . +.|.+.++..... ... ....-.....|++++++..|..+
T Consensus 486 ~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~------~~l-~~~~l~~PnGlavd~~~~~LY~aD 558 (699)
T 1n7d_A 486 KRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI------YSL-VTENIQWPNGITLDLLSGRLYWVD 558 (699)
T ss_dssp CEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCC------CEE-SCSSCSSCCCEEECTTTCCEEEEE
T ss_pred ceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCe------eEE-EeCCCCCccEEEEeccCCEEEEEe
Confidence 444333333345678899986665555443 2 6777776644310 111 11122346789999876555444
Q ss_pred ECCCeEEEEECCCCeeeEEecC-CCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeEEEEee
Q psy3053 732 TEAGELIIWSLENHLMTQQLSD-DINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCNKV 795 (917)
Q Consensus 732 s~dG~I~iwDl~~~~~~~~l~~-~h~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~tg~~i~~~~ 795 (917)
+..+.|..+++........+.. ........+++..+ .++++....+.|..++..+|+.+..+.
T Consensus 559 ~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~~~G~~~~~i~ 622 (699)
T 1n7d_A 559 SKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLTGSDVNLLA 622 (699)
T ss_dssp TTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEETTTEEEEECCC
T ss_pred cCCCeEEEEccCCCceEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEccCCCceEEee
Confidence 4567899999875433322221 11233445566544 455555567889999988887766554
No 316
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=96.80 E-value=0.16 Score=54.11 Aligned_cols=226 Identities=13% Similarity=0.076 Sum_probs=110.9
Q ss_pred EEEEEec--CCceEEEeccCCceeeeeeccccceEEEEEeCCCCEEEEEecc----cEEEEEEeccCeeeEE--eccCCC
Q psy3053 594 SVASVGR--DAMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTMLVGCWD----SCVVIYDVECGRIVTE--LAGHED 665 (917)
Q Consensus 594 ~Lasgs~--Dg~I~IWd~~t~~~~~~~~~~~~~V~sl~~spd~~~Lasgs~D----g~I~Iwdl~tg~~i~~--l~~H~~ 665 (917)
.++.|+. ...+.+||..+++-...-..........+..-++.+++.|+.+ ..+.+||..+++-... +.....
T Consensus 14 l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~ 93 (306)
T 3ii7_A 14 RIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVFWDNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRD 93 (306)
T ss_dssp EEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEEETTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCB
T ss_pred EEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEEECCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCcccc
Confidence 4455554 3567788877654322111111111112222367788888765 6788999887754332 221111
Q ss_pred ceeEEEecCCCCEEEEEECC------CeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEEEEC------
Q psy3053 666 AISCVAWDEKRKRLISGSWD------CTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTE------ 733 (917)
Q Consensus 666 ~Vt~l~~spd~~~L~Sgs~D------gtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~------ 733 (917)
...++.+ ++..++.|+.+ ..+.+||..+..-. .............++. -++.+++.|+.
T Consensus 94 ~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~-----~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~ 164 (306)
T 3ii7_A 94 SLAACAA--EGKIYTSGGSEVGNSALYLFECYDTRTESWH-----TKPSMLTQRCSHGMVE--ANGLIYVCGGSLGNNVS 164 (306)
T ss_dssp SCEEEEE--TTEEEEECCBBTTBSCCCCEEEEETTTTEEE-----EECCCSSCCBSCEEEE--ETTEEEEECCEESCTTT
T ss_pred ceeEEEE--CCEEEEECCCCCCCcEeeeEEEEeCCCCceE-----eCCCCcCCcceeEEEE--ECCEEEEECCCCCCCCc
Confidence 1122222 56777777765 45888888765200 0000000111111222 25677777753
Q ss_pred ---CCeEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEEeCC-----CeEEEEECCCCeEEEEeecCC--ceEEE
Q psy3053 734 ---AGELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCGNN-----CMLNVYDLTTGMQVCNKVFEE--KLLCL 803 (917)
Q Consensus 734 ---dG~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~D-----g~I~iwDl~tg~~i~~~~~~~--~i~~l 803 (917)
-..+.+||+.+.+-...-.......-.+++. -+++.++.|+.+ ..+.+||+.+++-......+. .-.++
T Consensus 165 ~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~ 243 (306)
T 3ii7_A 165 GRVLNSCEVYDPATETWTELCPMIEARKNHGLVF-VKDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKC 243 (306)
T ss_dssp CEECCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCEETTEEBCCEEEEETTTTEEEECCCCSCCBSCCEE
T ss_pred ccccceEEEeCCCCCeEEECCCccchhhcceEEE-ECCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCCccceeE
Confidence 3458899998875433322111111112222 266677766643 358889988775443322221 11222
Q ss_pred EEeCCCEEEEEeCC-----CeEEEEECCCCE
Q psy3053 804 SWAGEEKVILGGAL-----GMVYLVDLIQVQ 829 (917)
Q Consensus 804 ~~s~~~~lv~gs~d-----G~I~vwdl~~~~ 829 (917)
+..++..++.|+.+ ..+.+||..+.+
T Consensus 244 ~~~~~~i~v~GG~~~~~~~~~~~~yd~~~~~ 274 (306)
T 3ii7_A 244 AAVGSIVYVLAGFQGVGRLGHILEYNTETDK 274 (306)
T ss_dssp EEETTEEEEEECBCSSSBCCEEEEEETTTTE
T ss_pred EEECCEEEEEeCcCCCeeeeeEEEEcCCCCe
Confidence 23344355666643 456677766654
No 317
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=96.77 E-value=1 Score=50.34 Aligned_cols=228 Identities=14% Similarity=0.114 Sum_probs=136.9
Q ss_pred EEEeCCCcEEEEEecCCceEEEeccCCceeeeeeccccceEEEEEeCCCCEEEEEecccEEEEEEecc-CeeeEEeccCC
Q psy3053 586 VAICGEGISVASVGRDAMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTMLVGCWDSCVVIYDVEC-GRIVTELAGHE 664 (917)
Q Consensus 586 v~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~~~~~~~~V~sl~~spd~~~Lasgs~Dg~I~Iwdl~t-g~~i~~l~~H~ 664 (917)
.-.+|..+.+|--. ..++.|+|+++...+++...... |.-=.|-.+. .|+..+ +..|+-|+++. ..+++.+..|.
T Consensus 71 AIMnP~~~iiALra-g~~lQiFnle~K~klks~~~~e~-VvfWkWis~~-~l~lVT-~taVyHWsi~~~s~P~kvFdR~~ 146 (494)
T 1bpo_A 71 AIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTDD-VTFWKWISLN-TVALVT-DNAVYHWSMEGESQPVKMFDRHS 146 (494)
T ss_dssp EEECSSSSCEEEEE-TTEEEEEETTTTEEEEEEECSSC-CCEEEEEETT-EEEEEC-SSEEEEEESSSSCCCEEEEECCG
T ss_pred eeeCCCCcEEEEec-CCeEEEEchHHhhhhcceecCCC-ceEEEecCCC-eEEEEc-CCeeEEecccCCCCchhheecch
Confidence 34567766666554 78999999999988888776553 4444454443 333333 56799999974 34555665553
Q ss_pred ----CceeEEEecCCCCEEEEEE-------CCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCC---CCEEEE
Q psy3053 665 ----DAISCVAWDEKRKRLISGS-------WDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKD---NNQLAV 730 (917)
Q Consensus 665 ----~~Vt~l~~spd~~~L~Sgs-------~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd---g~~Las 730 (917)
..|..-..+++.++++..+ -.|.+.+|..+.. ......+|...-..+.+..+ ..+++.
T Consensus 147 ~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~--------~sQ~ieGhaa~F~~~~~~g~~~~~~lf~f 218 (494)
T 1bpo_A 147 SLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK--------VSQPIEGHAASFAQFKMEGNAEESTLFCF 218 (494)
T ss_dssp GGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTC--------CEEEECCSEEEEEEEECTTCSSEEEEEEE
T ss_pred hcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeecccc--------ccchheeeeeeeEEEecCCCCCCceEEEE
Confidence 4566777788888876443 2478889998765 22233344333322222111 123444
Q ss_pred EEC---CCeEEEEECCCC--------eeeEEec---CCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeEEEEeec
Q psy3053 731 GTE---AGELIIWSLENH--------LMTQQLS---DDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCNKVF 796 (917)
Q Consensus 731 gs~---dG~I~iwDl~~~--------~~~~~l~---~~h~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~tg~~i~~~~~ 796 (917)
+.. .+.+++.++... +....+. ....+-..++..|+.-..+...+.-|.+++||+.++.++.....
T Consensus 219 a~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~i~lyDleTgt~i~~nrI 298 (494)
T 1bpo_A 219 AVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRI 298 (494)
T ss_dssp EECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEEC
T ss_pred EEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEecCceEEEEecccceeeeeecc
Confidence 433 378999888543 1111111 12244566788899888999999999999999999998876554
Q ss_pred CC-ceEEEEEe-CCCEEEEEeCCCeEEEEEC
Q psy3053 797 EE-KLLCLSWA-GEEKVILGGALGMVYLVDL 825 (917)
Q Consensus 797 ~~-~i~~l~~s-~~~~lv~gs~dG~I~vwdl 825 (917)
.. .+...+.+ ..+-+++....|.|.-..+
T Consensus 299 s~~~iF~t~~~~~~~Gi~~Vnr~GqVl~v~v 329 (494)
T 1bpo_A 299 SGETIFVTAPHEATAGIIGVNRKGQVLSVCV 329 (494)
T ss_dssp CSSCEEEEEEETTTTEEEEEETTCEEEEEEE
T ss_pred cCCceEEecccCCCCcEEEEccCceEEEEEE
Confidence 33 33333332 2234444445555544443
No 318
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=96.66 E-value=0.22 Score=53.01 Aligned_cols=228 Identities=12% Similarity=0.075 Sum_probs=121.2
Q ss_pred CCEEEEEec--ccEEEEEEeccCeeeEE--eccCCCceeEEEecCCCCEEEEEECC----CeEEEEeCCCCCCCccCCcc
Q psy3053 634 NCTMLVGCW--DSCVVIYDVECGRIVTE--LAGHEDAISCVAWDEKRKRLISGSWD----CTVRVWNTGASWSHMKPSKS 705 (917)
Q Consensus 634 ~~~Lasgs~--Dg~I~Iwdl~tg~~i~~--l~~H~~~Vt~l~~spd~~~L~Sgs~D----gtI~vWdl~~~~~~~~~~~~ 705 (917)
+.+++.|+. ...+.+||..+++-... +........++.. ++..++.|+.+ ..+.++|..+..- ..
T Consensus 12 ~~l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~d~~~~~W-----~~ 84 (306)
T 3ii7_A 12 DYRIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVFW--DNVVYILGGSQLFPIKRMDCYNVVKDSW-----YS 84 (306)
T ss_dssp CEEEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEEE--TTEEEEECCBSSSBCCEEEEEETTTTEE-----EE
T ss_pred ceEEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEEE--CCEEEEEeCCCCCCcceEEEEeCCCCeE-----EE
Confidence 345556654 35688899887654321 2111111222222 55677777755 5788888876520 01
Q ss_pred eeeeccCCCceEEEEEeCCCCEEEEEECC------CeEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEEeC---
Q psy3053 706 LVSQLDLDNRIKCLAISKDNNQLAVGTEA------GELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCGN--- 776 (917)
Q Consensus 706 ~~~~~~h~~~V~~l~~spdg~~Lasgs~d------G~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~--- 776 (917)
............++. -++.+++.|+.+ ..+.+||..+.+-...-.......-.+++ .-+++.++.|+.
T Consensus 85 ~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~-~~~~~iyv~GG~~~~ 161 (306)
T 3ii7_A 85 KLGPPTPRDSLAACA--AEGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMV-EANGLIYVCGGSLGN 161 (306)
T ss_dssp EECCSSCCBSCEEEE--ETTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEE-EETTEEEEECCEESC
T ss_pred CCCCCccccceeEEE--ECCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEE-EECCEEEEECCCCCC
Confidence 111111111112222 267777887765 45889999887543332211111111222 236666666653
Q ss_pred ------CCeEEEEECCCCeEEEEeecCC--ceEEEEEeCCCEEEEEeCC-----CeEEEEECCCCEEEEE--EecCCCce
Q psy3053 777 ------NCMLNVYDLTTGMQVCNKVFEE--KLLCLSWAGEEKVILGGAL-----GMVYLVDLIQVQLLKQ--VRAHKDAV 841 (917)
Q Consensus 777 ------Dg~I~iwDl~tg~~i~~~~~~~--~i~~l~~s~~~~lv~gs~d-----G~I~vwdl~~~~~i~~--l~~h~~~V 841 (917)
-..+.+||..+.+-........ .-.++...++..++.|+.+ ..+.+||+.+.+-... +.......
T Consensus 162 ~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~ 241 (306)
T 3ii7_A 162 NVSGRVLNSCEVYDPATETWTELCPMIEARKNHGLVFVKDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTV 241 (306)
T ss_dssp TTTCEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCEETTEEBCCEEEEETTTTEEEECCCCSCCBSCC
T ss_pred CCcccccceEEEeCCCCCeEEECCCccchhhcceEEEECCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCCccce
Confidence 3458899998876544322222 1223333444456666543 4689999988754322 22222223
Q ss_pred EEEeecCCEEEEEeCC-----CeEEEEECcCCeEE
Q psy3053 842 LSLHFDNCTMLVGCWD-----SCVVIYDVECGRIV 871 (917)
Q Consensus 842 ~sis~dg~~Lasgs~D-----G~I~Iwdl~tg~~l 871 (917)
.++..++++++.|+.+ ..+.+||..+.+..
T Consensus 242 ~~~~~~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~ 276 (306)
T 3ii7_A 242 KCAAVGSIVYVLAGFQGVGRLGHILEYNTETDKWV 276 (306)
T ss_dssp EEEEETTEEEEEECBCSSSBCCEEEEEETTTTEEE
T ss_pred eEEEECCEEEEEeCcCCCeeeeeEEEEcCCCCeEE
Confidence 3445578888888854 56889999877643
No 319
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=96.65 E-value=1.1 Score=49.09 Aligned_cols=232 Identities=12% Similarity=0.052 Sum_probs=122.2
Q ss_pred cceEEEEEeCCCcEEEEEecCCceEEEeccCCc-eeeeee---ccccceEEEEEeCC---CCEEEEEec----c----cE
Q psy3053 581 EAITAVAICGEGISVASVGRDAMLKIHSLKTGR-QERSAV---LSSMTLSSLCILPD---NCTMLVGCW----D----SC 645 (917)
Q Consensus 581 ~~Vtsv~fSpdg~~Lasgs~Dg~I~IWd~~t~~-~~~~~~---~~~~~V~sl~~spd---~~~Lasgs~----D----g~ 645 (917)
..-.+++|.|+|+ |+.+..+|.|.+++ .+++ .+..+. ........++++|+ +..|.++.. + +.
T Consensus 29 ~~P~~ia~~pdG~-l~V~e~~g~I~~~d-~~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~ 106 (354)
T 3a9g_A 29 EVPWSIAPLGGGR-YLVTERPGRLVLIS-PSGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNR 106 (354)
T ss_dssp SCEEEEEEEETTE-EEEEETTTEEEEEC-SSCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEE
T ss_pred CCCeEEEEcCCCe-EEEEeCCCEEEEEe-CCCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceE
Confidence 3457899999997 55556779999887 3444 111111 12345788999997 445544433 3 67
Q ss_pred EEEEEeccC--e-----ee-EEecc-CCCceeEEEecCCCCEEEEEEC-------------CCeEEEEeCCCCCCCccCC
Q psy3053 646 VVIYDVECG--R-----IV-TELAG-HEDAISCVAWDEKRKRLISGSW-------------DCTVRVWNTGASWSHMKPS 703 (917)
Q Consensus 646 I~Iwdl~tg--~-----~i-~~l~~-H~~~Vt~l~~spd~~~L~Sgs~-------------DgtI~vWdl~~~~~~~~~~ 703 (917)
|..|+...+ . .+ ..+.. .......++|.|+|.+.++.+. .|.|.-.+.........+.
T Consensus 107 v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~npf 186 (354)
T 3a9g_A 107 VIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADNPF 186 (354)
T ss_dssp EEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTSSS
T ss_pred EEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCCCC
Confidence 777877654 1 11 11221 1113467999999987776432 1445555543220000000
Q ss_pred -cceeeeccCCCceEEEEEeC-CCCEEEEEECCC---eEEEEECCC--------C--------eeeEEecCCCCCCeEEE
Q psy3053 704 -KSLVSQLDLDNRIKCLAISK-DNNQLAVGTEAG---ELIIWSLEN--------H--------LMTQQLSDDINASVNGV 762 (917)
Q Consensus 704 -~~~~~~~~h~~~V~~l~~sp-dg~~Lasgs~dG---~I~iwDl~~--------~--------~~~~~l~~~h~~~V~~v 762 (917)
.......++. ....++|+| ++.+.++-...+ .|.+..... + .++..+. ........+
T Consensus 187 ~~~~i~a~G~r-np~Gla~d~~~g~l~v~d~g~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~-~~~~ap~G~ 264 (354)
T 3a9g_A 187 PNSPIWSYGHR-NPQGIDWHRASGVMVATEHGPVGHDEVNIILKGGNYGWPLATGKAGRGEFVDPVIDTG-SETWAPSGA 264 (354)
T ss_dssp TTCCEEEECCS-CCCEEEECTTTCCEEEEECCSSSCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECT-TCCCCEEEE
T ss_pred CCCcEEEEccC-CcceEEEeCCCCCEEEEecCCCCCcEEEEecCCCcCCCCcccCCCCCCCCcCCEeecC-CCCcCCcce
Confidence 0111122332 356899999 566544432211 243332111 0 1122221 123457788
Q ss_pred EEe-------cCCCEEEEEeCCCeEEEEECCCC-eEEE--Eeec--CCceEEEEEeCCCEEEEEeC
Q psy3053 763 LFS-------EDGCRVLSCGNNCMLNVYDLTTG-MQVC--NKVF--EEKLLCLSWAGEEKVILGGA 816 (917)
Q Consensus 763 ~fs-------pdg~~L~s~s~Dg~I~iwDl~tg-~~i~--~~~~--~~~i~~l~~s~~~~lv~gs~ 816 (917)
+|. .+|.++++....+.|...++... .... .+.. ...+..+++.+++.+.+++.
T Consensus 265 ~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~v~~~pDG~lyv~~~ 330 (354)
T 3a9g_A 265 SFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFFKNVFGRLRDVVIDDDGGILISTS 330 (354)
T ss_dssp EECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEECTTTSCCEEEEEECTTSCEEEEEC
T ss_pred EEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeeccCCCCCeeEEEECCCCcEEEEEe
Confidence 883 46767766666778888887643 3221 1111 34677888887776655543
No 320
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=96.61 E-value=0.15 Score=54.45 Aligned_cols=229 Identities=15% Similarity=0.055 Sum_probs=109.1
Q ss_pred CCcEEEEEec----CCceEEEeccCCceeeeeeccccceEEEEEeCCCCEEEEEec----c-----cEEEEEEeccCeee
Q psy3053 591 EGISVASVGR----DAMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTMLVGCW----D-----SCVVIYDVECGRIV 657 (917)
Q Consensus 591 dg~~Lasgs~----Dg~I~IWd~~t~~~~~~~~~~~~~V~sl~~spd~~~Lasgs~----D-----g~I~Iwdl~tg~~i 657 (917)
++..++.|+. -..+.++|..+++-...-..........+..-++.+++.|+. + +.+.+||..+.+-.
T Consensus 24 ~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~ 103 (308)
T 1zgk_A 24 GRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWS 103 (308)
T ss_dssp CCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCEEEETTEEEECCCEEEEETTTTEEE
T ss_pred CCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccccceEEEECCEEEEECCCcCCCCCCeecceEEEECCCCCeEe
Confidence 3445555553 235777887665432211111111111112236777777776 2 35788888776533
Q ss_pred EE--eccCCCceeEEEecCCCCEEEEEECC-----CeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEE
Q psy3053 658 TE--LAGHEDAISCVAWDEKRKRLISGSWD-----CTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAV 730 (917)
Q Consensus 658 ~~--l~~H~~~Vt~l~~spd~~~L~Sgs~D-----gtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Las 730 (917)
.. +........++.+ ++..++.|+.+ ..+.+||..+..-.... . .........++.+ ++.+++.
T Consensus 104 ~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~--~---~p~~r~~~~~~~~--~~~iyv~ 174 (308)
T 1zgk_A 104 PCAPMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVA--P---MLTRRIGVGVAVL--NRLLYAV 174 (308)
T ss_dssp ECCCCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTTEEEECC--C---CSSCCBSCEEEEE--TTEEEEE
T ss_pred ECCCCCcCccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCCeEeECC--C---CCccccceEEEEE--CCEEEEE
Confidence 22 1111111222222 55667776643 35788888765210000 0 0011111122222 6677777
Q ss_pred EECC-----CeEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEEeCC-----CeEEEEECCCCeEEEEeecCC--
Q psy3053 731 GTEA-----GELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCGNN-----CMLNVYDLTTGMQVCNKVFEE-- 798 (917)
Q Consensus 731 gs~d-----G~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~D-----g~I~iwDl~tg~~i~~~~~~~-- 798 (917)
|+.+ ..+.+||+.+.+-...-.......-.+++. -+++.++.|+.+ ..+.+||+.+.+-........
T Consensus 175 GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r 253 (308)
T 1zgk_A 175 GGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCV-LHNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRR 253 (308)
T ss_dssp CCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE-ETTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSCC
T ss_pred eCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEE-ECCEEEEEeCCCCCCccceEEEEeCCCCcEEECCCCCCCc
Confidence 7654 458899988765432211111111112222 266677777654 468899988775543322221
Q ss_pred ceEEEEEeCCCEEEEEeCC-----CeEEEEECCCCE
Q psy3053 799 KLLCLSWAGEEKVILGGAL-----GMVYLVDLIQVQ 829 (917)
Q Consensus 799 ~i~~l~~s~~~~lv~gs~d-----G~I~vwdl~~~~ 829 (917)
.-.+++..++..++.|+.+ ..+.+||+.+.+
T Consensus 254 ~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 289 (308)
T 1zgk_A 254 SALGITVHQGRIYVLGGYDGHTFLDSVECYDPDTDT 289 (308)
T ss_dssp BSCEEEEETTEEEEECCBCSSCBCCEEEEEETTTTE
T ss_pred cceEEEEECCEEEEEcCcCCCcccceEEEEcCCCCE
Confidence 1122333344345555533 345666665544
No 321
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=96.58 E-value=1.2 Score=48.80 Aligned_cols=230 Identities=9% Similarity=-0.017 Sum_probs=118.2
Q ss_pred ceEEEEEeCCCcEEEEEecCCceEEEeccCCcee---eee----eccccceEEEEEeCC---CCEEEEEe-c-------c
Q psy3053 582 AITAVAICGEGISVASVGRDAMLKIHSLKTGRQE---RSA----VLSSMTLSSLCILPD---NCTMLVGC-W-------D 643 (917)
Q Consensus 582 ~Vtsv~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~---~~~----~~~~~~V~sl~~spd---~~~Lasgs-~-------D 643 (917)
.-.+|+|.|+|+.++.+...|.|++++.. +... ..+ .........++++|+ +..|.++. . .
T Consensus 19 ~P~~i~~~pdG~~l~V~e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~~ 97 (353)
T 2g8s_A 19 HPWALAFLPDNHGMLITLRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAG 97 (353)
T ss_dssp SEEEEEECSTTCCEEEEETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCEE
T ss_pred CcEEEEEcCCCCEEEEEeCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCce
Confidence 45789999999845556678999988853 3221 111 112345678999996 44444443 2 2
Q ss_pred cEEEEEEeccC--e--eeE----Eec---cCCCceeEEEecCCCCEEEEEEC-------------CCeEEEEeCCCCCCC
Q psy3053 644 SCVVIYDVECG--R--IVT----ELA---GHEDAISCVAWDEKRKRLISGSW-------------DCTVRVWNTGASWSH 699 (917)
Q Consensus 644 g~I~Iwdl~tg--~--~i~----~l~---~H~~~Vt~l~~spd~~~L~Sgs~-------------DgtI~vWdl~~~~~~ 699 (917)
..|..++...+ + ... .+. .....-..++|.|||.+.++.+. .|.|.-.+.......
T Consensus 98 ~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~p~ 177 (353)
T 2g8s_A 98 TAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGEIPD 177 (353)
T ss_dssp EEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSCCCT
T ss_pred eEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCCCCC
Confidence 35666666533 1 111 111 11112357999999965555433 245666665432100
Q ss_pred ccCC------cceeeeccCCCceEEEEEeCCCCEEEEEECCC--eEEEEECCCCe-------------------------
Q psy3053 700 MKPS------KSLVSQLDLDNRIKCLAISKDNNQLAVGTEAG--ELIIWSLENHL------------------------- 746 (917)
Q Consensus 700 ~~~~------~~~~~~~~h~~~V~~l~~spdg~~Lasgs~dG--~I~iwDl~~~~------------------------- 746 (917)
..+. .......++ .....++|+|+...|.++.... .=.|.-+..+.
T Consensus 178 ~npf~~~~~~~~~i~a~G~-rnp~gl~~d~~~g~l~~~d~g~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~~~~~~~~~ 256 (353)
T 2g8s_A 178 DNPFIKESGVRAEIWSYGI-RNPQGMAMNPWSNALWLNEHGPRGGDEINIPQKGKNYGWPLATWGINYSGFKIPEAKGEI 256 (353)
T ss_dssp TCTTTTSTTSCTTEEEECC-SEEEEEEEETTTTEEEEEEECSBSCEEEECCCTTCBCCTTTBCSSBCTTSSCCTTCCBSS
T ss_pred CCCCcCCCCCCccEEEEcC-cCccceEEECCCCCEEEEecCCCCCcEEeEeccCCcCCCCCccCCCCCCCCccCcccCCC
Confidence 0000 011112233 3467899999433444443321 11121111111
Q ss_pred ------eeEEecCCCCCCeEEEEEec-------CCCEEEEEeCCCeEEEEECCCCeEEEEee----cCCceEEEEEeCCC
Q psy3053 747 ------MTQQLSDDINASVNGVLFSE-------DGCRVLSCGNNCMLNVYDLTTGMQVCNKV----FEEKLLCLSWAGEE 809 (917)
Q Consensus 747 ------~~~~l~~~h~~~V~~v~fsp-------dg~~L~s~s~Dg~I~iwDl~tg~~i~~~~----~~~~i~~l~~s~~~ 809 (917)
+...+ .+...+..++|.. +|.++++....+.|...++..+....... ....+..+++.+++
T Consensus 257 ~~~~~~P~~~~--~~~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG 334 (353)
T 2g8s_A 257 VAGTEQPVFYW--KDSPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRTGPDG 334 (353)
T ss_dssp CTTSCCCSEEE--SSCCCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEEECTTS
T ss_pred CCCccCCeEEe--CCCcCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEEECCCC
Confidence 01111 1223566777764 46666666667778777776654443322 13467778887777
Q ss_pred EEEEEe
Q psy3053 810 KVILGG 815 (917)
Q Consensus 810 ~lv~gs 815 (917)
.+.+++
T Consensus 335 ~lyv~t 340 (353)
T 2g8s_A 335 YLYVLT 340 (353)
T ss_dssp CEEEEE
T ss_pred cEEEEE
Confidence 666554
No 322
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=96.51 E-value=0.31 Score=53.57 Aligned_cols=177 Identities=12% Similarity=0.053 Sum_probs=101.6
Q ss_pred cccEEEEEEecc--Ceee-EEecc-----CCCceeEEEecC--CCC-EEEEEE-C--CCeEEEEeCCCCCCCccCCccee
Q psy3053 642 WDSCVVIYDVEC--GRIV-TELAG-----HEDAISCVAWDE--KRK-RLISGS-W--DCTVRVWNTGASWSHMKPSKSLV 707 (917)
Q Consensus 642 ~Dg~I~Iwdl~t--g~~i-~~l~~-----H~~~Vt~l~~sp--d~~-~L~Sgs-~--DgtI~vWdl~~~~~~~~~~~~~~ 707 (917)
.+|.|.++|.++ ++.. -.+.+ ..-....+.+.+ ++. +|+.+. . +.+|.+|++...... ....
T Consensus 81 ~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~----~~~~ 156 (355)
T 3sre_A 81 KSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKS----LLHL 156 (355)
T ss_dssp -CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTE----EEEE
T ss_pred CCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCE----EEEE
Confidence 689999999873 2221 12222 223566777655 343 454443 2 568888887654211 1111
Q ss_pred eec--cCCCceEEEEEeCCCCEEEEEE-----------------CCCeEEEEECCCCeeeEEecCCCCCCeEEEEEecCC
Q psy3053 708 SQL--DLDNRIKCLAISKDNNQLAVGT-----------------EAGELIIWSLENHLMTQQLSDDINASVNGVLFSEDG 768 (917)
Q Consensus 708 ~~~--~h~~~V~~l~~spdg~~Lasgs-----------------~dG~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg 768 (917)
... ..-.....+++.++|.+.++.. ..|.|.-+|.. +. ..+. ..-...+.++|+||+
T Consensus 157 ~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~~--~~-~~~~-~~l~~pNGia~spDg 232 (355)
T 3sre_A 157 KTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPN--DV-RVVA-EGFDFANGINISPDG 232 (355)
T ss_dssp EEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECTT--CC-EEEE-EEESSEEEEEECTTS
T ss_pred eccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEECC--eE-EEee-cCCcccCcceECCCC
Confidence 111 1234578999999998777654 12556666653 22 2222 223467899999999
Q ss_pred CEEEEEe-CCCeEEEEECCC-CeEE--EEeecCCceEEEEEeC-CCEEEEEe-CC-CeEEEEECC
Q psy3053 769 CRVLSCG-NNCMLNVYDLTT-GMQV--CNKVFEEKLLCLSWAG-EEKVILGG-AL-GMVYLVDLI 826 (917)
Q Consensus 769 ~~L~s~s-~Dg~I~iwDl~t-g~~i--~~~~~~~~i~~l~~s~-~~~lv~gs-~d-G~I~vwdl~ 826 (917)
+.++.+. ..+.|..|++.. +... ..+...+....++.+. +|.+.+++ .+ +.|..|+..
T Consensus 233 ~~lYvadt~~~~I~~~~~~~~g~l~~~~~~~~~g~PDGi~vD~e~G~lwva~~~~g~~v~~~~P~ 297 (355)
T 3sre_A 233 KYVYIAELLAHKIHVYEKHANWTLTPLRVLSFDTLVDNISVDPVTGDLWVGCHPNGMRIFFYDAE 297 (355)
T ss_dssp SEEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSEEEEEEECTTTCCEEEEEESCHHHHHSCCTT
T ss_pred CEEEEEeCCCCeEEEEEECCCCcEecCEEEeCCCCCceEEEeCCCCcEEEEecCCceEEEEECCC
Confidence 8887765 467899999853 3322 2234456677788887 47766644 23 345445443
No 323
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=96.50 E-value=0.12 Score=57.72 Aligned_cols=151 Identities=15% Similarity=0.107 Sum_probs=99.4
Q ss_pred EeCCCcEEEEEecCCceEEEeccCCceeeeeecc----ccceEEEEEeCCCCEEEEEecccEEEEEEeccCee-------
Q psy3053 588 ICGEGISVASVGRDAMLKIHSLKTGRQERSAVLS----SMTLSSLCILPDNCTMLVGCWDSCVVIYDVECGRI------- 656 (917)
Q Consensus 588 fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~~~~~----~~~V~sl~~spd~~~Lasgs~Dg~I~Iwdl~tg~~------- 656 (917)
.+.+|..++.+ .++.||.-++.++..-+.+... -..+..+..+|+|++||..+ +..|.|-.+..+..
T Consensus 28 ~~~n~t~i~~a-~~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g-~~~V~Vv~LP~~~~~~~~~~~ 105 (452)
T 3pbp_A 28 SSQNGTRIVFI-QDNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFN-DNEIFVMEVPWGYSNVEDVSI 105 (452)
T ss_dssp EETTTTEEEEE-ETTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEEC-SSEEEEEECCTTCSCCCCHHH
T ss_pred EEcCCCEEEEE-ECCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEec-CCeEEEEEecCccccCccccc
Confidence 44566666655 4588888888755555555554 22578899999999999886 45788888773320
Q ss_pred -----eEEecc------CCCceeEEEecC---CCCEEEEEECCCeEEEEeCCCCCCCcc---CCcceeeeccCCCceEEE
Q psy3053 657 -----VTELAG------HEDAISCVAWDE---KRKRLISGSWDCTVRVWNTGASWSHMK---PSKSLVSQLDLDNRIKCL 719 (917)
Q Consensus 657 -----i~~l~~------H~~~Vt~l~~sp---d~~~L~Sgs~DgtI~vWdl~~~~~~~~---~~~~~~~~~~h~~~V~~l 719 (917)
...+.- ...+|..+.|+| .+..|++-..|++|++||+........ ..............|.++
T Consensus 106 ~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~ 185 (452)
T 3pbp_A 106 QDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDL 185 (452)
T ss_dssp HHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEE
T ss_pred ccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCcchhccccccCCCcccceEEEE
Confidence 112221 256799999999 456899999999999999987421111 000111112233678899
Q ss_pred EEeCCCCEEEEEE--CCCeEEEE
Q psy3053 720 AISKDNNQLAVGT--EAGELIIW 740 (917)
Q Consensus 720 ~~spdg~~Lasgs--~dG~I~iw 740 (917)
+|..++-.|.+.+ .+|.|+-.
T Consensus 186 ~Fg~~~lTLYvl~~t~~GDIYAl 208 (452)
T 3pbp_A 186 EFSKDGLTLYCLNTTEGGDIFAF 208 (452)
T ss_dssp EECTTSSCEEEEECTTSCEEEEE
T ss_pred EEcCCCcEEEEEecCCCCCEEEE
Confidence 9999886666655 77877654
No 324
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=96.40 E-value=0.24 Score=52.84 Aligned_cols=230 Identities=13% Similarity=0.013 Sum_probs=119.0
Q ss_pred CCCCEEEEEecc----cEEEEEEeccCeeeEE--eccCCCceeEEEecCCCCEEEEEEC----C-----CeEEEEeCCCC
Q psy3053 632 PDNCTMLVGCWD----SCVVIYDVECGRIVTE--LAGHEDAISCVAWDEKRKRLISGSW----D-----CTVRVWNTGAS 696 (917)
Q Consensus 632 pd~~~Lasgs~D----g~I~Iwdl~tg~~i~~--l~~H~~~Vt~l~~spd~~~L~Sgs~----D-----gtI~vWdl~~~ 696 (917)
-++.+++.|+.+ ..+.+||..+++-... +......- +++.. ++..++.|+. + ..+.++|..+.
T Consensus 23 ~~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~ 100 (308)
T 1zgk_A 23 VGRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGL-AGCVV-GGLLYAVGGRNNSPDGNTDSSALDCYNPMTN 100 (308)
T ss_dssp CCCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSC-EEEEE-TTEEEEECCEEEETTEEEECCCEEEEETTTT
T ss_pred CCCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccccc-eEEEE-CCEEEEECCCcCCCCCCeecceEEEECCCCC
Confidence 355666666642 3578888877654322 11111111 22222 5566666665 2 35788887765
Q ss_pred CCCccCCcceeeeccCCCceEEEEEeCCCCEEEEEECC-----CeEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEE
Q psy3053 697 WSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEA-----GELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRV 771 (917)
Q Consensus 697 ~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~d-----G~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L 771 (917)
.-.... . .........++.+ ++.+++.|+.+ ..+.+||+.+.+-...-.......-.+++. -+++.+
T Consensus 101 ~W~~~~--~---~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~iy 172 (308)
T 1zgk_A 101 QWSPCA--P---MSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAV-LNRLLY 172 (308)
T ss_dssp EEEECC--C---CSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEE-ETTEEE
T ss_pred eEeECC--C---CCcCccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEE-ECCEEE
Confidence 210000 0 0011111122222 56777777643 358889988765433221111111112222 266677
Q ss_pred EEEeCC-----CeEEEEECCCCeEEEEeecCC--ceEEEEEeCCCEEEEEeCC-----CeEEEEECCCCEEEEE--EecC
Q psy3053 772 LSCGNN-----CMLNVYDLTTGMQVCNKVFEE--KLLCLSWAGEEKVILGGAL-----GMVYLVDLIQVQLLKQ--VRAH 837 (917)
Q Consensus 772 ~s~s~D-----g~I~iwDl~tg~~i~~~~~~~--~i~~l~~s~~~~lv~gs~d-----G~I~vwdl~~~~~i~~--l~~h 837 (917)
+.|+.+ ..+.+||+.+.+-........ .-.+++..++..++.|+.+ ..+.+||+.+.+-... +...
T Consensus 173 v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~ 252 (308)
T 1zgk_A 173 AVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVLHNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHR 252 (308)
T ss_dssp EECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSC
T ss_pred EEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEECCEEEEEeCCCCCCccceEEEEeCCCCcEEECCCCCCC
Confidence 777654 458899998876543322221 1223333455456666654 5699999988764332 2211
Q ss_pred CCceEEEeecCCEEEEEeCC-----CeEEEEECcCCeEE
Q psy3053 838 KDAVLSLHFDNCTMLVGCWD-----SCVVIYDVECGRIV 871 (917)
Q Consensus 838 ~~~V~sis~dg~~Lasgs~D-----G~I~Iwdl~tg~~l 871 (917)
.....++..++++++.|+.+ ..+.+||..+.+..
T Consensus 253 r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~ 291 (308)
T 1zgk_A 253 RSALGITVHQGRIYVLGGYDGHTFLDSVECYDPDTDTWS 291 (308)
T ss_dssp CBSCEEEEETTEEEEECCBCSSCBCCEEEEEETTTTEEE
T ss_pred ccceEEEEECCEEEEEcCcCCCcccceEEEEcCCCCEEe
Confidence 22223334577788888754 45788888877643
No 325
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=96.38 E-value=0.34 Score=51.75 Aligned_cols=221 Identities=10% Similarity=-0.013 Sum_probs=116.3
Q ss_pred EEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEEEEC-----C------CeEEEEECCCCee
Q psy3053 679 LISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTE-----A------GELIIWSLENHLM 747 (917)
Q Consensus 679 L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~-----d------G~I~iwDl~~~~~ 747 (917)
++.|+ ..+..||..+.. . ...............+...++.+++.|+. . ..+..||..+.+-
T Consensus 8 ~~~GG--~~~~~yd~~~~~--W----~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W 79 (315)
T 4asc_A 8 FMISE--EGAVAYDPAANE--C----YCASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEW 79 (315)
T ss_dssp EEEET--TEEEEEETTTTE--E----EEEECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEE
T ss_pred EEEcC--CceEEECCCCCe--E----ecCCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeE
Confidence 34444 568889987652 1 01111111122233334457788888873 1 1277889887754
Q ss_pred eEEecCCCCCCeEEEEEecCCCEEEEEeCC--------CeEEEEECCCCeEEEEeecCC--ceEEEEEeCCCEEEEEeC-
Q psy3053 748 TQQLSDDINASVNGVLFSEDGCRVLSCGNN--------CMLNVYDLTTGMQVCNKVFEE--KLLCLSWAGEEKVILGGA- 816 (917)
Q Consensus 748 ~~~l~~~h~~~V~~v~fspdg~~L~s~s~D--------g~I~iwDl~tg~~i~~~~~~~--~i~~l~~s~~~~lv~gs~- 816 (917)
.. +...........+..-+++.++.|+.+ ..+.+||..+++-......+. .-.+++..++..++.|+.
T Consensus 80 ~~-~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~ 158 (315)
T 4asc_A 80 LG-MPPLPSPRCLFGLGEALNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLSHMDLVYVIGGKG 158 (315)
T ss_dssp EE-CCCBSSCEESCEEEEETTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBC
T ss_pred EE-CCCCCcchhceeEEEECCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEEECCEEEEEeCCC
Confidence 32 221111111111122266666666632 458999998876443322222 122333344545666665
Q ss_pred -----CCeEEEEECCCCEEEEE--EecCCCceEEEeecCCEEEEEeCCC-----eEEEEECcCCeEEEEecCCC--CCEE
Q psy3053 817 -----LGMVYLVDLIQVQLLKQ--VRAHKDAVLSLHFDNCTMLVGCWDS-----CVVIYDVECGRIVTELAGHE--DAIS 882 (917)
Q Consensus 817 -----dG~I~vwdl~~~~~i~~--l~~h~~~V~sis~dg~~Lasgs~DG-----~I~Iwdl~tg~~l~~l~~h~--~~V~ 882 (917)
...+.+||..+.+-... +........++..++++++.|+.++ .+.+||..+.+....-.... ....
T Consensus 159 ~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~ 238 (315)
T 4asc_A 159 SDRKCLNKMCVYDPKKFEWKELAPMQTARSLFGATVHDGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQERSSLS 238 (315)
T ss_dssp TTSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEEEEECSSSEEEEEEEEETTTTEEEEECCCSSCCBSCE
T ss_pred CCCcccceEEEEeCCCCeEEECCCCCCchhceEEEEECCEEEEEeccCCCCccceEEEEECCCCeEEECCCCCCccccee
Confidence 24799999988754332 2212222334455888888887654 58889998876544322111 1112
Q ss_pred EEEEcCCCCEEEEEeCCC--------------cEEEEecCcc
Q psy3053 883 CVAWDEKRKRLISGNLVG--------------APKLYATEFY 910 (917)
Q Consensus 883 slafSpdg~~LaSgs~DG--------------~V~IWdl~~~ 910 (917)
.+.+ +++.++.||.++ .+.+||++..
T Consensus 239 ~~~~--~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~ 278 (315)
T 4asc_A 239 LVSL--VGTLYAIGGFATLETESGELVPTELNDIWRYNEEEK 278 (315)
T ss_dssp EEEE--TTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTT
T ss_pred EEEE--CCEEEEECCccccCcCCccccccccCcEEEecCCCC
Confidence 2222 567777777642 3667777654
No 326
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=96.23 E-value=1.9 Score=47.23 Aligned_cols=193 Identities=12% Similarity=0.128 Sum_probs=108.8
Q ss_pred eEEEEEeCCCcEEEEE------------ecCCceEEEeccCCc-eeeeeecc-------ccceEEEEEeC--CCC--EEE
Q psy3053 583 ITAVAICGEGISVASV------------GRDAMLKIHSLKTGR-QERSAVLS-------SMTLSSLCILP--DNC--TML 638 (917)
Q Consensus 583 Vtsv~fSpdg~~Lasg------------s~Dg~I~IWd~~t~~-~~~~~~~~-------~~~V~sl~~sp--d~~--~La 638 (917)
.-.++..|+|..++++ ..+|.|.++|..+.. ....+... ......+.+.+ ++. +++
T Consensus 52 ~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~V 131 (355)
T 3sre_A 52 SEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLV 131 (355)
T ss_dssp CCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEE
T ss_pred cceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEE
Confidence 3456667877554444 168999999987421 12222221 22345566555 443 444
Q ss_pred EEec--ccEEEEEEeccCe----eeEEeccC-CCceeEEEecCCCCEEEEEEC---C------------CeEEEEeCCCC
Q psy3053 639 VGCW--DSCVVIYDVECGR----IVTELAGH-EDAISCVAWDEKRKRLISGSW---D------------CTVRVWNTGAS 696 (917)
Q Consensus 639 sgs~--Dg~I~Iwdl~tg~----~i~~l~~H-~~~Vt~l~~spd~~~L~Sgs~---D------------gtI~vWdl~~~ 696 (917)
+-.. +.+|.+|+++.+. .+..+.+. -...+.+++.++|.+.++... | ..=.+|.+..+
T Consensus 132 vnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~~ 211 (355)
T 3sre_A 132 VNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPN 211 (355)
T ss_dssp EECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECTT
T ss_pred EECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEECC
Confidence 4333 5688888887542 23334332 235788999999987776541 1 12233333222
Q ss_pred CCCccCCcceeeeccCCCceEEEEEeCCCCEEEEEE-CCCeEEEEECCC-Cee--eEEecCCCCCCeEEEEEec-CCCEE
Q psy3053 697 WSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGT-EAGELIIWSLEN-HLM--TQQLSDDINASVNGVLFSE-DGCRV 771 (917)
Q Consensus 697 ~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs-~dG~I~iwDl~~-~~~--~~~l~~~h~~~V~~v~fsp-dg~~L 771 (917)
........-...+.++|+||++.+.++. ..+.|..|++.. +.. .+.+ ...+....+++.+ +|++.
T Consensus 212 --------~~~~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~--~~~g~PDGi~vD~e~G~lw 281 (355)
T 3sre_A 212 --------DVRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVL--SFDTLVDNISVDPVTGDLW 281 (355)
T ss_dssp --------CCEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEE--ECSSEEEEEEECTTTCCEE
T ss_pred --------eEEEeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEE--eCCCCCceEEEeCCCCcEE
Confidence 1111122234568999999998777665 568899999863 322 1223 2346678889998 58877
Q ss_pred EEEeCC-CeEEEEEC
Q psy3053 772 LSCGNN-CMLNVYDL 785 (917)
Q Consensus 772 ~s~s~D-g~I~iwDl 785 (917)
+++..+ +.|..|+.
T Consensus 282 va~~~~g~~v~~~~P 296 (355)
T 3sre_A 282 VGCHPNGMRIFFYDA 296 (355)
T ss_dssp EEEESCHHHHHSCCT
T ss_pred EEecCCceEEEEECC
Confidence 766544 34444443
No 327
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=96.20 E-value=2.2 Score=47.65 Aligned_cols=252 Identities=13% Similarity=0.098 Sum_probs=151.2
Q ss_pred ccEEEEEEeccCeeeEEeccCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEe
Q psy3053 643 DSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAIS 722 (917)
Q Consensus 643 Dg~I~Iwdl~tg~~i~~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~s 722 (917)
+.+|.|.|+.++..+..-. -..-+.-.+|..+.+|.-. ..++.++|+++. ...........|.--.|-
T Consensus 47 ~~~vvIiDl~~~~~~~rrp---i~AdsAIMnP~~~iiALra-g~~lQiFnle~K--------~klks~~~~e~VvfWkWi 114 (494)
T 1bpo_A 47 QAQVVIIDMNDPSNPIRRP---ISADSAIMNPASKVIALKA-GKTLQIFNIEMK--------SKMKAHTMTDDVTFWKWI 114 (494)
T ss_dssp CCEEEEEETTSTTSCEEEE---CCCSEEEECSSSSCEEEEE-TTEEEEEETTTT--------EEEEEEECSSCCCEEEEE
T ss_pred CCeEEEEECCCCCcceecc---cccceeeeCCCCcEEEEec-CCeEEEEchHHh--------hhhcceecCCCceEEEec
Confidence 3478888988765442211 1122445678777777665 789999999875 223333344566666665
Q ss_pred CCCCEEEEEECCCeEEEEECCCC-eeeEEecC---CCCCCeEEEEEecCCCEEEEEeC-------CCeEEEEECCCCeEE
Q psy3053 723 KDNNQLAVGTEAGELIIWSLENH-LMTQQLSD---DINASVNGVLFSEDGCRVLSCGN-------NCMLNVYDLTTGMQV 791 (917)
Q Consensus 723 pdg~~Lasgs~dG~I~iwDl~~~-~~~~~l~~---~h~~~V~~v~fspdg~~L~s~s~-------Dg~I~iwDl~tg~~i 791 (917)
.+. .|+..+ +..|+-|++... .+.+.+.. -....|..-..+++.++++..|- .|.+.+|+.+.+...
T Consensus 115 s~~-~l~lVT-~taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~sQ 192 (494)
T 1bpo_A 115 SLN-TVALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQ 192 (494)
T ss_dssp ETT-EEEEEC-SSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCCEE
T ss_pred CCC-eEEEEc-CCeeEEecccCCCCchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccccccc
Confidence 543 444444 457999999753 33333331 12457777888899999886552 467889998766443
Q ss_pred EEeecCCceEEEEEeCC---CEEEE-EeC---CCeEEEEECCCC--------EEEEEEe----cCCCceEEE--eecCCE
Q psy3053 792 CNKVFEEKLLCLSWAGE---EKVIL-GGA---LGMVYLVDLIQV--------QLLKQVR----AHKDAVLSL--HFDNCT 850 (917)
Q Consensus 792 ~~~~~~~~i~~l~~s~~---~~lv~-gs~---dG~I~vwdl~~~--------~~i~~l~----~h~~~V~si--s~dg~~ 850 (917)
....|......+...++ ..+++ +.. .+.+++.++... +....+. ...+-..++ +..-..
T Consensus 193 ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygv 272 (494)
T 1bpo_A 193 PIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDV 272 (494)
T ss_dssp EECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTE
T ss_pred hheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCE
Confidence 22222221112222211 11222 222 278888888432 1111111 112223334 666777
Q ss_pred EEEEeCCCeEEEEECcCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecC
Q psy3053 851 MLVGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGNLVGAPKLYATE 908 (917)
Q Consensus 851 Lasgs~DG~I~Iwdl~tg~~l~~l~~h~~~V~slafSpdg~~LaSgs~DG~V~IWdl~ 908 (917)
+..-+.-|.|++||++++.++..-+-...+|-.-+-+.+..-++.....|.|.--.++
T Consensus 273 iyviTK~G~i~lyDleTgt~i~~nrIs~~~iF~t~~~~~~~Gi~~Vnr~GqVl~v~v~ 330 (494)
T 1bpo_A 273 VFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVLSVCVE 330 (494)
T ss_dssp EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTTTEEEEEETTCEEEEEEEC
T ss_pred EEEEecCceEEEEecccceeeeeecccCCceEEecccCCCCcEEEEccCceEEEEEEc
Confidence 8889999999999999999998877667777766666665666666678877655554
No 328
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=96.16 E-value=0.66 Score=49.50 Aligned_cols=181 Identities=9% Similarity=-0.025 Sum_probs=90.8
Q ss_pred CceEEEeccCCceee-eeeccccceEEEEEeCCCCEEEEEec-----------ccEEEEEEeccCeeeEE--eccCCCce
Q psy3053 602 AMLKIHSLKTGRQER-SAVLSSMTLSSLCILPDNCTMLVGCW-----------DSCVVIYDVECGRIVTE--LAGHEDAI 667 (917)
Q Consensus 602 g~I~IWd~~t~~~~~-~~~~~~~~V~sl~~spd~~~Lasgs~-----------Dg~I~Iwdl~tg~~i~~--l~~H~~~V 667 (917)
..+.+||..+++-.. .+..........+...++..++.|+. ...+..||..+++-... +.......
T Consensus 13 ~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~ 92 (315)
T 4asc_A 13 EGAVAYDPAANECYCASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPSPRCLF 92 (315)
T ss_dssp TEEEEEETTTTEEEEEECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCBSSCEESC
T ss_pred CceEEECCCCCeEecCCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCCCcchhce
Confidence 567888887765332 11111122233334457788888874 12377888887654221 11111111
Q ss_pred eEEEecCCCCEEEEEECC--------CeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEEEEC-C----
Q psy3053 668 SCVAWDEKRKRLISGSWD--------CTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTE-A---- 734 (917)
Q Consensus 668 t~l~~spd~~~L~Sgs~D--------gtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~-d---- 734 (917)
+++.. ++..++.|+.+ ..+.++|..+.. .. ........... .+++ ..++++++.|+. +
T Consensus 93 -~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~--W~---~~~~~p~~r~~-~~~~-~~~~~iyv~GG~~~~~~~ 163 (315)
T 4asc_A 93 -GLGEA-LNSIYVVGGREIKDGERCLDSVMCYDRLSFK--WG---ESDPLPYVVYG-HTVL-SHMDLVYVIGGKGSDRKC 163 (315)
T ss_dssp -EEEEE-TTEEEEECCEESSTTCCBCCCEEEEETTTTE--EE---ECCCCSSCCBS-CEEE-EETTEEEEECCBCTTSCB
T ss_pred -eEEEE-CCEEEEEeCCcCCCCCcccceEEEECCCCCc--Ee---ECCCCCCcccc-eeEE-EECCEEEEEeCCCCCCcc
Confidence 12222 55666666632 458888887652 00 00000011111 1222 235677777776 2
Q ss_pred -CeEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEEeCCC-----eEEEEECCCCeEEE
Q psy3053 735 -GELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCGNNC-----MLNVYDLTTGMQVC 792 (917)
Q Consensus 735 -G~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~Dg-----~I~iwDl~tg~~i~ 792 (917)
..+.+||+.+.+-...-. .........+..-+++.++.|+.++ .+.+||+.+.+-..
T Consensus 164 ~~~~~~yd~~~~~W~~~~~-~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~ 226 (315)
T 4asc_A 164 LNKMCVYDPKKFEWKELAP-MQTARSLFGATVHDGRIIVAAGVTDTGLTSSAEVYSITDNKWAP 226 (315)
T ss_dssp CCCEEEEETTTTEEEECCC-CSSCCBSCEEEEETTEEEEEEEECSSSEEEEEEEEETTTTEEEE
T ss_pred cceEEEEeCCCCeEEECCC-CCCchhceEEEEECCEEEEEeccCCCCccceEEEEECCCCeEEE
Confidence 468999998765333221 1111111122223677777777654 57888888775443
No 329
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=95.98 E-value=0.072 Score=58.17 Aligned_cols=188 Identities=9% Similarity=0.039 Sum_probs=102.1
Q ss_pred CEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEE--e-CCCCEEEEE-ECCCeEEEEECCCCeeeEEec
Q psy3053 677 KRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAI--S-KDNNQLAVG-TEAGELIIWSLENHLMTQQLS 752 (917)
Q Consensus 677 ~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~--s-pdg~~Lasg-s~dG~I~iwDl~~~~~~~~l~ 752 (917)
..++.++.||.|.-.|..++......... ...++....- . .++..++.. +.||.|..++..+|.....+.
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~------~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~ 84 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIEPE------NFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLS 84 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEECGG------GSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEE
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCC------ccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeec
Confidence 57888899999999998777322211100 0011111000 0 122333333 589999999998886554433
Q ss_pred CC---CCCCeEE---EEE-e----cCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCce--------EEEEE------eC
Q psy3053 753 DD---INASVNG---VLF-S----EDGCRVLSCGNNCMLNVYDLTTGMQVCNKVFEEKL--------LCLSW------AG 807 (917)
Q Consensus 753 ~~---h~~~V~~---v~f-s----pdg~~L~s~s~Dg~I~iwDl~tg~~i~~~~~~~~i--------~~l~~------s~ 807 (917)
.. ...++.. ... . ..+..+++++.+|.+...|+.+|+.+......... .|... ..
T Consensus 85 ~~~lv~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~ 164 (339)
T 2be1_A 85 IRQLVSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQEC 164 (339)
T ss_dssp HHHHHTTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC--------------------
T ss_pred cccceeccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCcccccccccccccccccccccC
Confidence 11 1112221 000 0 14557889999999999999999999887765321 12221 12
Q ss_pred CCEEEEEeCCCeEEEEECCCCEE----EEEEecCCCc--e---EEEeecCCEEEEEeCCCeEEEEECcCCeEEE
Q psy3053 808 EEKVILGGALGMVYLVDLIQVQL----LKQVRAHKDA--V---LSLHFDNCTMLVGCWDSCVVIYDVECGRIVT 872 (917)
Q Consensus 808 ~~~lv~gs~dG~I~vwdl~~~~~----i~~l~~h~~~--V---~sis~dg~~Lasgs~DG~I~Iwdl~tg~~l~ 872 (917)
++.++.|..+..+.+.+ ++|+. .......... + ..++.|+.+ +.++.||.|..+|..+|+.+.
T Consensus 165 ~~~v~ig~~~y~v~~~~-~sG~~W~~~~s~~~~~~~~~~~~~~~~~s~Dg~~-~~~~~dg~v~A~d~~~G~~~W 236 (339)
T 2be1_A 165 ENMIVIGKTIFELGIHS-YDGASYNVTYSTWQQNVLDVPLALQNTFSKDGMC-IAPFRDKSLLASDLDFRIARW 236 (339)
T ss_dssp CCEEEEEEEEEECEECC-TTSCCCCCEEEEEECCTTTHHHHTTCSSCSSSCC-EEEETTTEEEEECSTTCCEEE
T ss_pred CCeEEEecceEEEEEEC-CCCCeEEEecccccccccccccccccccccCCcE-EEECCCCEEEEEECCCCcEEE
Confidence 34677777777777666 34431 1111111100 0 000123555 557888999999988888765
No 330
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=95.93 E-value=1.1 Score=47.64 Aligned_cols=228 Identities=12% Similarity=0.052 Sum_probs=115.9
Q ss_pred EEEEEecccEEEEEEeccCeeeEE-eccCCCceeEEEecCCCCEEEEEEC----CC-------eEEEEeCCCCCCCccCC
Q psy3053 636 TMLVGCWDSCVVIYDVECGRIVTE-LAGHEDAISCVAWDEKRKRLISGSW----DC-------TVRVWNTGASWSHMKPS 703 (917)
Q Consensus 636 ~Lasgs~Dg~I~Iwdl~tg~~i~~-l~~H~~~Vt~l~~spd~~~L~Sgs~----Dg-------tI~vWdl~~~~~~~~~~ 703 (917)
.++.|+. .+..||..+++-... +..........+...++..++.|+. ++ .+.++|..+..-...
T Consensus 18 i~~~GG~--~~~~yd~~~~~W~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~-- 93 (318)
T 2woz_A 18 ILLVNDT--AAVAYDPMENECYLTALAEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGL-- 93 (318)
T ss_dssp EEEECSS--EEEEEETTTTEEEEEEECTTSCSSEEEEECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEEC--
T ss_pred hhhcccc--ceEEECCCCCceecccCCccCCccceEEEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEEC--
Confidence 4444543 378888887764431 1111111122223346677777773 12 166778765421000
Q ss_pred cceeeeccCCCceEEEEEeCCCCEEEEEECC-------CeEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEEeC
Q psy3053 704 KSLVSQLDLDNRIKCLAISKDNNQLAVGTEA-------GELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCGN 776 (917)
Q Consensus 704 ~~~~~~~~h~~~V~~l~~spdg~~Lasgs~d-------G~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~ 776 (917)
.. ......-.+++.. ++.+++.|+.+ ..+.+||..+.+-...-. .........+...+++.++.|+.
T Consensus 94 ~~----~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~-~p~~r~~~~~~~~~~~iyv~GG~ 167 (318)
T 2woz_A 94 PP----LPSARCLFGLGEV-DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKN-LPIKVYGHNVISHNGMIYCLGGK 167 (318)
T ss_dssp SC----BSSCBCSCEEEEE-TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECC-CSSCEESCEEEEETTEEEEECCE
T ss_pred CC----CCccccccceEEE-CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCC-CCCcccccEEEEECCEEEEEcCC
Confidence 00 0001111122222 56777777754 357888988765433221 11111111122246667777663
Q ss_pred ------CCeEEEEECCCCeEEEEeecCC--ceEEEEEeCCCEEEEEeCC-----CeEEEEECCCCEEEE--EEecCCCce
Q psy3053 777 ------NCMLNVYDLTTGMQVCNKVFEE--KLLCLSWAGEEKVILGGAL-----GMVYLVDLIQVQLLK--QVRAHKDAV 841 (917)
Q Consensus 777 ------Dg~I~iwDl~tg~~i~~~~~~~--~i~~l~~s~~~~lv~gs~d-----G~I~vwdl~~~~~i~--~l~~h~~~V 841 (917)
-..+.+||..+.+-........ .-.+++..++..++.|+.+ ..+.+||+.+.+-.. .+.......
T Consensus 168 ~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~ 247 (318)
T 2woz_A 168 TDDKKCTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAIHKGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQERSSI 247 (318)
T ss_dssp ESSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEEEEEETTEEEEEEEEEETTTCCEEECCCCSSCCBSC
T ss_pred CCCCCccceEEEEcCCCCEEEECCCCCCCcccceEEEECCEEEEEcCcCCCCccceEEEEECCCCeEEECCCCCCcccce
Confidence 2358999998876544322222 1223334455466666643 457789988765332 222222223
Q ss_pred EEEeecCCEEEEEeCC--------------CeEEEEECcCCeEEEE
Q psy3053 842 LSLHFDNCTMLVGCWD--------------SCVVIYDVECGRIVTE 873 (917)
Q Consensus 842 ~sis~dg~~Lasgs~D--------------G~I~Iwdl~tg~~l~~ 873 (917)
.++..++++++.|+.+ ..+.+||..+.+....
T Consensus 248 ~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~ 293 (318)
T 2woz_A 248 SLVSLAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKEWAGM 293 (318)
T ss_dssp EEEEETTEEEEECCBCCBC----CCBCCBCCCEEEEETTTTEEEEE
T ss_pred EEEEECCEEEEECCeeccCCCCceeccceeeeEEEEeCCCCEehhh
Confidence 3445677777877754 3578889887775544
No 331
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=95.90 E-value=1 Score=47.95 Aligned_cols=188 Identities=12% Similarity=0.044 Sum_probs=100.7
Q ss_pred EEeCCCCEEEEEEC----CC-------eEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEEeCC-------CeEE
Q psy3053 720 AISKDNNQLAVGTE----AG-------ELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCGNN-------CMLN 781 (917)
Q Consensus 720 ~~spdg~~Lasgs~----dG-------~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~D-------g~I~ 781 (917)
+...++.+++.|+. ++ .+..||..+.+-...-.......-.+++. -+++.++.|+.+ ..+.
T Consensus 52 ~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~ 130 (318)
T 2woz_A 52 IVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCLFGLGE-VDDKIYVVAGKDLQTEASLDSVL 130 (318)
T ss_dssp EECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCSCEEEE-ETTEEEEEEEEBTTTCCEEEEEE
T ss_pred EEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCccccccceEE-ECCEEEEEcCccCCCCcccceEE
Confidence 34457788888873 12 27788988765433211111111122222 266777777754 3588
Q ss_pred EEECCCCeEEEEeecCCce--EEEEEeCCCEEEEEeC------CCeEEEEECCCCEEEEE--EecCCCceEEEeecCCEE
Q psy3053 782 VYDLTTGMQVCNKVFEEKL--LCLSWAGEEKVILGGA------LGMVYLVDLIQVQLLKQ--VRAHKDAVLSLHFDNCTM 851 (917)
Q Consensus 782 iwDl~tg~~i~~~~~~~~i--~~l~~s~~~~lv~gs~------dG~I~vwdl~~~~~i~~--l~~h~~~V~sis~dg~~L 851 (917)
+||..+.+-......+.+. .+++...+..++.|+. ...+.+||..+.+-... +........++..+++.+
T Consensus 131 ~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iy 210 (318)
T 2woz_A 131 CYDPVAAKWSEVKNLPIKVYGHNVISHNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAIHKGKIV 210 (318)
T ss_dssp EEETTTTEEEEECCCSSCEESCEEEEETTEEEEECCEESSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEE
T ss_pred EEeCCCCCEeECCCCCCcccccEEEEECCEEEEEcCCCCCCCccceEEEEcCCCCEEEECCCCCCCcccceEEEECCEEE
Confidence 8999887654433332221 1233334435556653 24699999988764332 221222223345678888
Q ss_pred EEEeCC-----CeEEEEECcCCeEEEEe--cCCCCCEEEEEEcCCCCEEEEEeCC--------------CcEEEEecCcc
Q psy3053 852 LVGCWD-----SCVVIYDVECGRIVTEL--AGHEDAISCVAWDEKRKRLISGNLV--------------GAPKLYATEFY 910 (917)
Q Consensus 852 asgs~D-----G~I~Iwdl~tg~~l~~l--~~h~~~V~slafSpdg~~LaSgs~D--------------G~V~IWdl~~~ 910 (917)
+.|+.+ ..+.+||..+.+....- .........+. .+++.++.||.+ ..+.+||++..
T Consensus 211 v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~ 288 (318)
T 2woz_A 211 IAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQERSSISLVS--LAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKK 288 (318)
T ss_dssp EEEEEETTEEEEEEEEEETTTCCEEECCCCSSCCBSCEEEE--ETTEEEEECCBCCBC----CCBCCBCCCEEEEETTTT
T ss_pred EEcCcCCCCccceEEEEECCCCeEEECCCCCCcccceEEEE--ECCEEEEECCeeccCCCCceeccceeeeEEEEeCCCC
Confidence 887754 35778998877644321 11111112222 256777777754 35778887654
No 332
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=95.80 E-value=2.8 Score=45.63 Aligned_cols=229 Identities=10% Similarity=0.043 Sum_probs=122.9
Q ss_pred CCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceee----eccCCCceEEEEEeCC---CCEEEEE-E--
Q psy3053 663 HEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVS----QLDLDNRIKCLAISKD---NNQLAVG-T-- 732 (917)
Q Consensus 663 H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~----~~~h~~~V~~l~~spd---g~~Lasg-s-- 732 (917)
.-...+.|+|.|+|..+++--..|.|.+++...+.. ..... ..........++++|+ +..|.+. +
T Consensus 30 gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~-----~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~ 104 (347)
T 3das_A 30 GLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRK-----TELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSA 104 (347)
T ss_dssp CCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCE-----EEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECS
T ss_pred CCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcE-----eeecccCceeecCCCCceeeEeccccccCCEEEEEEecC
Confidence 345678999999998777654489999997654311 01110 1223556889999995 3444332 2
Q ss_pred CCCeEEEEECCCC----------eee-EEecCCCCCCeEEEEEecCCCEEEEEeC-------------CCeEEEEECCCC
Q psy3053 733 EAGELIIWSLENH----------LMT-QQLSDDINASVNGVLFSEDGCRVLSCGN-------------NCMLNVYDLTTG 788 (917)
Q Consensus 733 ~dG~I~iwDl~~~----------~~~-~~l~~~h~~~V~~v~fspdg~~L~s~s~-------------Dg~I~iwDl~tg 788 (917)
.++.|.-|.+..+ +.+ ..+..........++|.|||.+.++.+. .|.|.-.+....
T Consensus 105 ~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ 184 (347)
T 3das_A 105 SDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGE 184 (347)
T ss_dssp SSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSS
T ss_pred CCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCC
Confidence 3456766766541 111 1222122234567999999987777553 234444443321
Q ss_pred ---------eEEEEeecCCceEEEEEeCCCEEEEEeCCC--eEEEEECCCCE------------------EEEEEecCCC
Q psy3053 789 ---------MQVCNKVFEEKLLCLSWAGEEKVILGGALG--MVYLVDLIQVQ------------------LLKQVRAHKD 839 (917)
Q Consensus 789 ---------~~i~~~~~~~~i~~l~~s~~~~lv~gs~dG--~I~vwdl~~~~------------------~i~~l~~h~~ 839 (917)
..+....+ .....++|++++.+.++.... .-.+--+..+. ++..+..+..
T Consensus 185 ip~~nPf~~~~i~a~G~-RNp~Gla~dp~G~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~~~~~~~ 263 (347)
T 3das_A 185 PAPGNPFPGSPVYSYGH-RNVQGLAWDDKQRLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQWSTDEA 263 (347)
T ss_dssp BCTTCSSTTCCEEEBCC-SBCCEEEECTTCCEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEEECTTTC
T ss_pred ccCCCCCCCCeEEeeCC-CCcceEEECCCCCEEEEecCCCCCceeeEEcCCCEecCCcccCCCCCccccCCcEecCCCCC
Confidence 11111111 234567888877776655421 11111111111 1222222222
Q ss_pred ceEEEee-cCCEEEEEeCCCeEEEEECcCCeE----EEEecCCCCCEEEEEEcCCCCEEEEEe
Q psy3053 840 AVLSLHF-DNCTMLVGCWDSCVVIYDVECGRI----VTELAGHEDAISCVAWDEKRKRLISGN 897 (917)
Q Consensus 840 ~V~sis~-dg~~Lasgs~DG~I~Iwdl~tg~~----l~~l~~h~~~V~slafSpdg~~LaSgs 897 (917)
....+.+ +|..++..-..+.|....++.+.. ...+.+...++.+++..|||.++++.+
T Consensus 264 ap~G~~~~~g~~~~~~l~~~~l~~v~~~~~~~~~~~e~~l~~~~gR~~dv~~~pDG~lyv~td 326 (347)
T 3das_A 264 SPSGIAYAEGSVWMAGLRGERLWRIPLKGTAAAADPQAFLEGEYGRLRTVAPAGGDKLWLVTS 326 (347)
T ss_dssp CEEEEEEETTEEEEEESTTCSEEEEEEETTEESSCCEEESTTTSSCEEEEEEEETTEEEEEEC
T ss_pred CCcceEEEcCceeeccccCCEEEEEEecCCceecceEEeecCCCCCccEEEECCCCcEEEEEc
Confidence 3445544 455555555556676666654432 233444457899999999998777654
No 333
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=95.80 E-value=0.62 Score=50.59 Aligned_cols=234 Identities=10% Similarity=0.025 Sum_probs=115.1
Q ss_pred CCCEEEEEecc-cEEEEEEecc--Cee--eEEeccCCCceeEEEecCCCCEEEEEEC-C---------CeEEEEeCCCCC
Q psy3053 633 DNCTMLVGCWD-SCVVIYDVEC--GRI--VTELAGHEDAISCVAWDEKRKRLISGSW-D---------CTVRVWNTGASW 697 (917)
Q Consensus 633 d~~~Lasgs~D-g~I~Iwdl~t--g~~--i~~l~~H~~~Vt~l~~spd~~~L~Sgs~-D---------gtI~vWdl~~~~ 697 (917)
++.+.+.|+.+ ..+.++|..+ .+- +..+......-.+++.. ++..++.|+. + ..+.+||..+..
T Consensus 19 ~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~ 97 (357)
T 2uvk_A 19 NDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFI-DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNS 97 (357)
T ss_dssp TTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEEE-TTEEEEECCEEECTTSCEEECCCEEEEETTTTE
T ss_pred CCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccceEEEE-CCEEEEEcCCCCCCCccceeeccEEEEeCCCCc
Confidence 66666666653 4688888764 222 22222111111122222 5566676665 2 468888887652
Q ss_pred CCccCCcceeeeccCCCceEEEEEeCCCCEEEEEECC---------------------------------------CeEE
Q psy3053 698 SHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEA---------------------------------------GELI 738 (917)
Q Consensus 698 ~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~d---------------------------------------G~I~ 738 (917)
- . ...........-.+++ ..++++++.|+.+ ..+.
T Consensus 98 W--~---~~~~~~p~~r~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 171 (357)
T 2uvk_A 98 W--V---KLMSHAPMGMAGHVTF-VHNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFFNKFLL 171 (357)
T ss_dssp E--E---ECSCCCSSCCSSEEEE-EETTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGGGGCCCCEEE
T ss_pred E--E---ECCCCCCcccccceEE-EECCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhccccccccCCcccEE
Confidence 0 0 0000010111111222 2567888888764 4789
Q ss_pred EEECCCCeeeEEecCCCCCCe-EEEEEecCCCEEEEEeC------CCeEEEEEC--CCCeEEEEeecC--Cc--eEEEEE
Q psy3053 739 IWSLENHLMTQQLSDDINASV-NGVLFSEDGCRVLSCGN------NCMLNVYDL--TTGMQVCNKVFE--EK--LLCLSW 805 (917)
Q Consensus 739 iwDl~~~~~~~~l~~~h~~~V-~~v~fspdg~~L~s~s~------Dg~I~iwDl--~tg~~i~~~~~~--~~--i~~l~~ 805 (917)
+||..+.+-...-.......- .+++. -+++.++.|+. ...+..||+ .+.+-....... .. -.+++.
T Consensus 172 ~yd~~~~~W~~~~~~p~~~~~~~~~~~-~~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~~~~~~~~~~~~~ 250 (357)
T 2uvk_A 172 SFDPSTQQWSYAGESPWYGTAGAAVVN-KGDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDGVAGGFAGI 250 (357)
T ss_dssp EEETTTTEEEEEEECSSCCCBSCEEEE-ETTEEEEECCEEETTEECCCEEEEECC---CEEEECCCSSTTTCCBSCEEEE
T ss_pred EEeCCCCcEEECCCCCCCCcccccEEE-ECCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCCCCCcccccceEEE
Confidence 999987654332211111111 23333 25666666653 235777876 444333222221 11 122344
Q ss_pred eCCCEEEEEeCC----------------------CeEEEEECCCCE--EEEEEecCCCceEEEeecCCEEEEEeCCC---
Q psy3053 806 AGEEKVILGGAL----------------------GMVYLVDLIQVQ--LLKQVRAHKDAVLSLHFDNCTMLVGCWDS--- 858 (917)
Q Consensus 806 s~~~~lv~gs~d----------------------G~I~vwdl~~~~--~i~~l~~h~~~V~sis~dg~~Lasgs~DG--- 858 (917)
.++..++.|+.+ ..+.+||+.+.+ .+..+......-.++..++++++.|+.++
T Consensus 251 ~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~ 330 (357)
T 2uvk_A 251 SNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELSQGRAYGVSLPWNNSLLIIGGETAGGK 330 (357)
T ss_dssp ETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEECSSCCBSSEEEEETTEEEEEEEECGGGC
T ss_pred ECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCCCCCCcccceeEEeCCEEEEEeeeCCCCC
Confidence 455456666632 257889987654 44444333333445567888888888653
Q ss_pred ---eEEEEECcCCeEEEEe
Q psy3053 859 ---CVVIYDVECGRIVTEL 874 (917)
Q Consensus 859 ---~I~Iwdl~tg~~l~~l 874 (917)
.|.++++++++.+...
T Consensus 331 ~~~~v~~l~~~~~~~~~~~ 349 (357)
T 2uvk_A 331 AVTDSVLITVKDNKVTVQN 349 (357)
T ss_dssp EEEEEEEEEC-CCSCEEEC
T ss_pred EeeeEEEEEEcCcEeEeee
Confidence 4566688877765544
No 334
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=95.55 E-value=0.017 Score=63.20 Aligned_cols=142 Identities=12% Similarity=0.079 Sum_probs=88.7
Q ss_pred CEEEEEECCCeEEEEECCCCeeeEEecCCCCCCeEEEEE--ecCCCEEEEE--eCCCeEEEEECCCCeEEEEeecCC---
Q psy3053 726 NQLAVGTEAGELIIWSLENHLMTQQLSDDINASVNGVLF--SEDGCRVLSC--GNNCMLNVYDLTTGMQVCNKVFEE--- 798 (917)
Q Consensus 726 ~~Lasgs~dG~I~iwDl~~~~~~~~l~~~h~~~V~~v~f--spdg~~L~s~--s~Dg~I~iwDl~tg~~i~~~~~~~--- 798 (917)
..+++++.||.|.-+|..+|+...++......++....- .+.+..++.+ +.||.|..++..+|..........
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~ 90 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVS 90 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHT
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeecccccee
Confidence 578899999999999999999999987331122222110 0112234433 589999999999886655444321
Q ss_pred --ceEE---EEE------eCCCEEEEEeCCCeEEEEECCCCEEEEEEecCCC-------ceEEEe-------ecCCEEEE
Q psy3053 799 --KLLC---LSW------AGEEKVILGGALGMVYLVDLIQVQLLKQVRAHKD-------AVLSLH-------FDNCTMLV 853 (917)
Q Consensus 799 --~i~~---l~~------s~~~~lv~gs~dG~I~vwdl~~~~~i~~l~~h~~-------~V~sis-------~dg~~Las 853 (917)
++.. ... +.++.+++|+.+|.+...|+.+|+.+.++..... ...|.. -.+..++.
T Consensus 91 ~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~~~v~i 170 (339)
T 2be1_A 91 TSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQECENMIVI 170 (339)
T ss_dssp TCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC--------------------CCEEEE
T ss_pred ccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCcccccccccccccccccccccCCCeEEE
Confidence 2221 001 2566899999999999999999999998864321 011111 12456777
Q ss_pred EeCCCeEEEEECcCC
Q psy3053 854 GCWDSCVVIYDVECG 868 (917)
Q Consensus 854 gs~DG~I~Iwdl~tg 868 (917)
|..+..+.+.+ ++|
T Consensus 171 g~~~y~v~~~~-~sG 184 (339)
T 2be1_A 171 GKTIFELGIHS-YDG 184 (339)
T ss_dssp EEEEEECEECC-TTS
T ss_pred ecceEEEEEEC-CCC
Confidence 77777666655 344
No 335
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=95.39 E-value=0.54 Score=51.08 Aligned_cols=234 Identities=9% Similarity=0.035 Sum_probs=109.0
Q ss_pred CCcEEEEEecC-CceEEEeccC--Cceeeeeecc-ccceEEEEEeCCCCEEEEEec-c---------cEEEEEEeccCee
Q psy3053 591 EGISVASVGRD-AMLKIHSLKT--GRQERSAVLS-SMTLSSLCILPDNCTMLVGCW-D---------SCVVIYDVECGRI 656 (917)
Q Consensus 591 dg~~Lasgs~D-g~I~IWd~~t--~~~~~~~~~~-~~~V~sl~~spd~~~Lasgs~-D---------g~I~Iwdl~tg~~ 656 (917)
++..++.|+.+ ..+.++|..+ .+-....... .......+..-++++++.|+. + +.+.+||..+.+-
T Consensus 19 ~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~W 98 (357)
T 2uvk_A 19 NDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFIDGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSW 98 (357)
T ss_dssp TTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEEETTEEEEECCEEECTTSCEEECCCEEEEETTTTEE
T ss_pred CCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccceEEEECCEEEEEcCCCCCCCccceeeccEEEEeCCCCcE
Confidence 56666666543 4677888763 2211111111 111111122236777777776 2 4688899887653
Q ss_pred eEE--ec-cCCCceeEEEecCCCCEEEEEECC---------------------------------------CeEEEEeCC
Q psy3053 657 VTE--LA-GHEDAISCVAWDEKRKRLISGSWD---------------------------------------CTVRVWNTG 694 (917)
Q Consensus 657 i~~--l~-~H~~~Vt~l~~spd~~~L~Sgs~D---------------------------------------gtI~vWdl~ 694 (917)
... +. .......++. .+++.++.|+.+ ..+.++|..
T Consensus 99 ~~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~ 176 (357)
T 2uvk_A 99 VKLMSHAPMGMAGHVTFV--HNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFFNKFLLSFDPS 176 (357)
T ss_dssp EECSCCCSSCCSSEEEEE--ETTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGGGGCCCCEEEEEETT
T ss_pred EECCCCCCcccccceEEE--ECCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhccccccccCCcccEEEEeCC
Confidence 322 11 1111122222 466777888765 478888987
Q ss_pred CCCCCccCCcceeeeccCCCce-EEEEEeCCCCEEEEEEC------CCeEEEEEC--CCCeeeEEecC-C-CCCCeEEEE
Q psy3053 695 ASWSHMKPSKSLVSQLDLDNRI-KCLAISKDNNQLAVGTE------AGELIIWSL--ENHLMTQQLSD-D-INASVNGVL 763 (917)
Q Consensus 695 ~~~~~~~~~~~~~~~~~h~~~V-~~l~~spdg~~Lasgs~------dG~I~iwDl--~~~~~~~~l~~-~-h~~~V~~v~ 763 (917)
+.. .... ........- .+++. -++.+++.|+. ...+..+|+ .+.+-. .+.. . ......+.+
T Consensus 177 ~~~-----W~~~-~~~p~~~~~~~~~~~-~~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~-~~~~~~~~~~~~~~~~ 248 (357)
T 2uvk_A 177 TQQ-----WSYA-GESPWYGTAGAAVVN-KGDKTWLINGEAKPGLRTDAVFELDFTGNNLKWN-KLAPVSSPDGVAGGFA 248 (357)
T ss_dssp TTE-----EEEE-EECSSCCCBSCEEEE-ETTEEEEECCEEETTEECCCEEEEECC---CEEE-ECCCSSTTTCCBSCEE
T ss_pred CCc-----EEEC-CCCCCCCcccccEEE-ECCEEEEEeeecCCCcccCceEEEEecCCCCcEE-ecCCCCCCcccccceE
Confidence 652 0111 111111111 22222 25667777653 245777877 433222 2211 1 111112223
Q ss_pred EecCCCEEEEEeCC----------------------CeEEEEECCCCeEEEEeecCC--ceEEEEEeCCCEEEEEeCCC-
Q psy3053 764 FSEDGCRVLSCGNN----------------------CMLNVYDLTTGMQVCNKVFEE--KLLCLSWAGEEKVILGGALG- 818 (917)
Q Consensus 764 fspdg~~L~s~s~D----------------------g~I~iwDl~tg~~i~~~~~~~--~i~~l~~s~~~~lv~gs~dG- 818 (917)
...+++.++.|+.+ ..+.+||+.+.+-...-..+. .-.++...++..++.|+.++
T Consensus 249 ~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~ 328 (357)
T 2uvk_A 249 GISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELSQGRAYGVSLPWNNSLLIIGGETAG 328 (357)
T ss_dssp EEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEECSSCCBSSEEEEETTEEEEEEEECGG
T ss_pred EEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCCCCCCcccceeEEeCCEEEEEeeeCCC
Confidence 33466677777632 257789988764333222221 11222333444677777542
Q ss_pred -----eEEEEECCCCEEEEEE
Q psy3053 819 -----MVYLVDLIQVQLLKQV 834 (917)
Q Consensus 819 -----~I~vwdl~~~~~i~~l 834 (917)
.+.++++.+++.+...
T Consensus 329 ~~~~~~v~~l~~~~~~~~~~~ 349 (357)
T 2uvk_A 329 GKAVTDSVLITVKDNKVTVQN 349 (357)
T ss_dssp GCEEEEEEEEEC-CCSCEEEC
T ss_pred CCEeeeEEEEEEcCcEeEeee
Confidence 4566677776655443
No 336
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=95.32 E-value=3.7 Score=43.76 Aligned_cols=209 Identities=8% Similarity=-0.019 Sum_probs=112.2
Q ss_pred eCCCcEEEEEec--CCceEEEeccCCceeeeeeccccceEEEEEeCCCCEEEEEecc--------------cEEEEEEec
Q psy3053 589 CGEGISVASVGR--DAMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTMLVGCWD--------------SCVVIYDVE 652 (917)
Q Consensus 589 Spdg~~Lasgs~--Dg~I~IWd~~t~~~~~~~~~~~~~V~sl~~spd~~~Lasgs~D--------------g~I~Iwdl~ 652 (917)
+.+|..|+-... ++.|...+.+ |.....+... .+-.+++++.+|.-+... ..|+..+++
T Consensus 22 ~~~g~~iy~~n~~d~~~ly~~~~d-g~~~~~l~~~----~~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~d 96 (302)
T 3s25_A 22 CESDGEVFFSNTNDNGRLYAMNID-GSNIHKLSND----TAMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRN 96 (302)
T ss_dssp EEETTEEEEEEGGGTTEEEEEETT-SCSCEEEEEE----EEEEEEECSSEEEEEEECC------CCSSCCSEEEEEEETT
T ss_pred EEeCCEEEEEeCCCCceEEEEcCC-CCCCEEccCC----ceeeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCC
Confidence 456666665542 3444444433 3333333322 133467888888877553 467777777
Q ss_pred cCeeeEEeccCCCceeEEEecCCCCEEEEEE--CCCe--EEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEE
Q psy3053 653 CGRIVTELAGHEDAISCVAWDEKRKRLISGS--WDCT--VRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQL 728 (917)
Q Consensus 653 tg~~i~~l~~H~~~Vt~l~~spd~~~L~Sgs--~Dgt--I~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~L 728 (917)
.++...... .. +..++++++.|+-.. .++. |..-++... .......+.. .+++++++.|
T Consensus 97 g~~~~~l~~---~~--~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs--------~~~~lt~~~~----~~~~~~g~~i 159 (302)
T 3s25_A 97 GHGSTVLDP---DP--CIYASLIGNYIYYLHYDTQTATSLYRIRIDGE--------EKKKIKNHYL----FTCNTSDRYF 159 (302)
T ss_dssp SCCCEEEEC---SC--EEEEEEETTEEEEEEESSSSCEEEEEEETTSC--------CCEEEESSCC----CCSEEETTEE
T ss_pred CCcceEeec---CC--ccEEEEeCCEEEEEeecCCCCceEEEEECCCC--------CeEEEeCCCc----eEeeEECCEE
Confidence 665333222 11 236677888888766 3444 444455432 1111222221 3457788888
Q ss_pred EEEEC-CCeEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEEeCC--CeEEEEECCCCeEEEEeecCCceEEEEE
Q psy3053 729 AVGTE-AGELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCGNN--CMLNVYDLTTGMQVCNKVFEEKLLCLSW 805 (917)
Q Consensus 729 asgs~-dG~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~D--g~I~iwDl~tg~~i~~~~~~~~i~~l~~ 805 (917)
.-.+. ...|...++..+....... +... ..++|++..|+-...+ ..|..-++..+.... + ....+..+++
T Consensus 160 y~t~~g~~~Iy~~~l~g~~~~~l~~----~~~~-~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~~~~-L-t~~~~~~~~~ 232 (302)
T 3s25_A 160 YYNNPKNGQLYRYDTASQSEALFYD----CNCY-KPVVLDDTNVYYMDVNRDNAIVHVNINNPNPVV-L-TEANIEHYNV 232 (302)
T ss_dssp EEECTTTCCEEEEETTTTEEEEEEC----SCEE-EEEEEETTEEEEEEGGGTTEEEEECSSSCCCEE-C-SCSCEEEEEE
T ss_pred EEEeCCCceEEEEECCCCCEEEEeC----CCcc-ceeeecCCEEEEEEcCCCcEEEEEECCCCCeEE-E-eCCCcceEEE
Confidence 76655 5788888887766544333 2222 3466888888876644 356666665543221 1 2334455555
Q ss_pred eCCCEEEEEe--CCCeEEEEECCC
Q psy3053 806 AGEEKVILGG--ALGMVYLVDLIQ 827 (917)
Q Consensus 806 s~~~~lv~gs--~dG~I~vwdl~~ 827 (917)
.++ .+..++ ..+.|...++..
T Consensus 233 ~g~-~Iy~~~~~~~~~i~~~~~DG 255 (302)
T 3s25_A 233 YGS-LIFYQRGGDNPALCVVKNDG 255 (302)
T ss_dssp ETT-EEEEEECSSSCEEEEEETTS
T ss_pred CCC-EEEEEECCCCcEEEEEECCC
Confidence 555 444332 235666666644
No 337
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=95.31 E-value=1.3 Score=49.25 Aligned_cols=149 Identities=14% Similarity=0.135 Sum_probs=94.3
Q ss_pred CCCCEEEEEecccEEEEEEeccCeeeEEeccC----CCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccC-----
Q psy3053 632 PDNCTMLVGCWDSCVVIYDVECGRIVTELAGH----EDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKP----- 702 (917)
Q Consensus 632 pd~~~Lasgs~Dg~I~Iwdl~tg~~i~~l~~H----~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~----- 702 (917)
.+|..++++- ++.||.-++..+..-+.+... -+.|..+..+|+|++||..+ +.+|.|-.+..+......
T Consensus 30 ~n~t~i~~a~-~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g-~~~V~Vv~LP~~~~~~~~~~~~~ 107 (452)
T 3pbp_A 30 QNGTRIVFIQ-DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFN-DNEIFVMEVPWGYSNVEDVSIQD 107 (452)
T ss_dssp TTTTEEEEEE-TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEEC-SSEEEEEECCTTCSCCCCHHHHH
T ss_pred cCCCEEEEEE-CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEec-CCeEEEEEecCccccCccccccc
Confidence 3444444433 466666666543333333322 23578899999999999876 568999888743211110
Q ss_pred -Ccceeeecc-----CCCceEEEEEeCC---CCEEEEEECCCeEEEEECCCCe--eeEEecC--------CCCCCeEEEE
Q psy3053 703 -SKSLVSQLD-----LDNRIKCLAISKD---NNQLAVGTEAGELIIWSLENHL--MTQQLSD--------DINASVNGVL 763 (917)
Q Consensus 703 -~~~~~~~~~-----h~~~V~~l~~spd---g~~Lasgs~dG~I~iwDl~~~~--~~~~l~~--------~h~~~V~~v~ 763 (917)
........+ ...+|..+.|+|- +..|++-..|+.|++||+.... +. .+.. .....|.+++
T Consensus 108 ~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~S~~ 186 (452)
T 3pbp_A 108 AFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDITDLE 186 (452)
T ss_dssp TTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCEEEEE
T ss_pred ccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhccccccCCCcccceEEEEE
Confidence 111111111 3578999999995 4689999999999999998621 12 2221 2226788999
Q ss_pred EecCCCEEEEEe--CCCeEEEE
Q psy3053 764 FSEDGCRVLSCG--NNCMLNVY 783 (917)
Q Consensus 764 fspdg~~L~s~s--~Dg~I~iw 783 (917)
|.++|-.|...+ .+|.|+-.
T Consensus 187 Fg~~~lTLYvl~~t~~GDIYAl 208 (452)
T 3pbp_A 187 FSKDGLTLYCLNTTEGGDIFAF 208 (452)
T ss_dssp ECTTSSCEEEEECTTSCEEEEE
T ss_pred EcCCCcEEEEEecCCCCCEEEE
Confidence 999888777755 77877654
No 338
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=95.30 E-value=2.5 Score=48.53 Aligned_cols=260 Identities=9% Similarity=0.019 Sum_probs=147.6
Q ss_pred EEEEecCCceEEEeccCCceeeeeeccc-------------------------cceE--EEEEe---CCCCEEEEEec-c
Q psy3053 595 VASVGRDAMLKIHSLKTGRQERSAVLSS-------------------------MTLS--SLCIL---PDNCTMLVGCW-D 643 (917)
Q Consensus 595 Lasgs~Dg~I~IWd~~t~~~~~~~~~~~-------------------------~~V~--sl~~s---pd~~~Lasgs~-D 643 (917)
+.||+..|.|+|+-+.+++.++.+..-+ +... .+.+. -||++|..-.. +
T Consensus 73 f~SgG~sG~v~v~G~PSmR~l~~IpVF~~~~~~G~G~t~esk~il~~~~~~~~gD~HHp~~S~tdg~yDGrylfiNdkan 152 (638)
T 3sbq_A 73 FWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGLTNESRHIMGDSAKFLNGDCHHPHISMTDGKYDGKYLFINDKAN 152 (638)
T ss_dssp EEECGGGCCEEEEEETTTEEEEEECSSSCCTTTCTTTBHHHHHHHGGGGGCCCCCCCCCEEEEETTEEEEEEEEEEETTT
T ss_pred EeecCcCceEEEEecCCcceEEEeecccCCCCcccCCchhHHHHHhcCCCccCCCcCCCcccccCCeeeeEEEEEecCCC
Confidence 6788899999999998887766543210 1111 12222 25667776653 5
Q ss_pred cEEEEEEeccCeeeEEecc-CCCceeEEEec--CCCCEEEEEECCCeEE-----EEeCCCCCCCc-------cCCcceee
Q psy3053 644 SCVVIYDVECGRIVTELAG-HEDAISCVAWD--EKRKRLISGSWDCTVR-----VWNTGASWSHM-------KPSKSLVS 708 (917)
Q Consensus 644 g~I~Iwdl~tg~~i~~l~~-H~~~Vt~l~~s--pd~~~L~Sgs~DgtI~-----vWdl~~~~~~~-------~~~~~~~~ 708 (917)
..|...+++.-++-+.+.- ....+.++++- |+..+++.++....=. ...++... .. .....+..
T Consensus 153 ~RvAri~l~~~~~d~Ii~iPn~~~~Hg~~~~~~p~T~yv~~~~e~~~P~pndg~~~~~~~~~-~y~~f~~iD~~tm~v~~ 231 (638)
T 3sbq_A 153 SRVARIRLDIMKCDKMITVPNVQAIHGLRLQKVPHTKYVFANAEFIIPHPNDGKVFDLQDEN-SYTMYNAIDAETMEMAF 231 (638)
T ss_dssp TEEEEEETTTTEEEEEEECTTCSCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCTTSTT-EEEEEEEEETTTCSEEE
T ss_pred cceEEEECCcEeeceeEeCCCCcCcccccccccCCccEEEecceeeccCCCCCcccccCChh-hceEEEEEcCCccEEEE
Confidence 5677778877766555442 45678888885 6888888887532110 00000000 00 00000000
Q ss_pred eccCCCceEEEEEeCCCCEEEEEECCC---------------eEEEE-------------------------ECCC----
Q psy3053 709 QLDLDNRIKCLAISKDNNQLAVGTEAG---------------ELIIW-------------------------SLEN---- 744 (917)
Q Consensus 709 ~~~h~~~V~~l~~spdg~~Lasgs~dG---------------~I~iw-------------------------Dl~~---- 744 (917)
...-+.....+...++|.+.++.+.+. .+.++ |.+.
T Consensus 232 Qv~v~gnld~~~~~~~g~~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~ie~~vk~G~~~~~~g~gv~ViD~~~~~~~ 311 (638)
T 3sbq_A 232 QVIVDGNLDNTDADYTGRFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVEAAVKAGDFITLGDSKTPVLDGRKKDGK 311 (638)
T ss_dssp EEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECSCBTTB
T ss_pred EEEcCCChhhcCCCCCCCEEEEeeeccccCcChhhcCcccccEEEEecHHHHHHHHhcCCeEEECCCCeeEEcccccccc
Confidence 000112223344456667766665421 13333 3332
Q ss_pred CeeeEEecCCCCCCeEEEEEecCCCEEEEEeC-CCeEEEEECCCC------e-------EEEEeecCCceEEEEEeCCCE
Q psy3053 745 HLMTQQLSDDINASVNGVLFSEDGCRVLSCGN-NCMLNVYDLTTG------M-------QVCNKVFEEKLLCLSWAGEEK 810 (917)
Q Consensus 745 ~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~-Dg~I~iwDl~tg------~-------~i~~~~~~~~i~~l~~s~~~~ 810 (917)
+.....+. +.......+.++|||+++++++. +.++.++|++.- + ........-.....+|+++|.
T Consensus 312 ~~~~~~~i-P~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~GlGPlHt~Fd~~G~ 390 (638)
T 3sbq_A 312 DSKFTRYV-PVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGLGPLHTTFDGRGN 390 (638)
T ss_dssp CCSSEEEE-EESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCSCEEEEEECSSSE
T ss_pred CCceEEEE-eCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCCcccEEEECCCCc
Confidence 11111111 12345567889999999888764 778999998731 1 234455566678899999886
Q ss_pred EEEEe-CCCeEEEEECCCC----------EEEEEEecCCCceEEE-------eecCCEEEEEeC
Q psy3053 811 VILGG-ALGMVYLVDLIQV----------QLLKQVRAHKDAVLSL-------HFDNCTMLVGCW 856 (917)
Q Consensus 811 lv~gs-~dG~I~vwdl~~~----------~~i~~l~~h~~~V~si-------s~dg~~Lasgs~ 856 (917)
..+.- -|..|..|++... ..+..+..|-.+-.-. .+||++|++...
T Consensus 391 aYTtlfidSqvvkWni~~a~~~~~g~~~~~v~~k~dv~YqpGH~~~~~get~~~dGk~lv~lnK 454 (638)
T 3sbq_A 391 AYTTLFIDSQVVKWNMEEAVRAYKGEKVNYIKQKLDVHYQPGHLHASLCETNEADGKWLVALSK 454 (638)
T ss_dssp EEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCSCEEEEEES
T ss_pred eEeeeeecceEEEEeccHHHHHhcCccCCeeeeccccccCCcccccCCCccCCCCccEEEEecc
Confidence 55544 7899999999653 4666676665443322 458888888743
No 339
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=95.23 E-value=2.6 Score=47.74 Aligned_cols=112 Identities=10% Similarity=0.109 Sum_probs=61.5
Q ss_pred CceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCc-cCCcceeeeccCCCceEEEEEeCC---CCEEEEEEC-------
Q psy3053 665 DAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHM-KPSKSLVSQLDLDNRIKCLAISKD---NNQLAVGTE------- 733 (917)
Q Consensus 665 ~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~-~~~~~~~~~~~h~~~V~~l~~spd---g~~Lasgs~------- 733 (917)
...++|+|.|+|+++++-...+.|.+++..++.... ..................++++|+ +..|.++..
T Consensus 27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~ 106 (454)
T 1cru_A 27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKST 106 (454)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC-
T ss_pred CCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCC
Confidence 456799999999877764433478888754331100 000000000013456789999995 444544332
Q ss_pred ------CCeEEEEECCCC-------eeeE-EecCCCCCCeEEEEEecCCCEEEEEeC
Q psy3053 734 ------AGELIIWSLENH-------LMTQ-QLSDDINASVNGVLFSEDGCRVLSCGN 776 (917)
Q Consensus 734 ------dG~I~iwDl~~~-------~~~~-~l~~~h~~~V~~v~fspdg~~L~s~s~ 776 (917)
...|.-++...+ +.+. .+..........++|.|||.+.++.+.
T Consensus 107 ~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd 163 (454)
T 1cru_A 107 DKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD 163 (454)
T ss_dssp -CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred ccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECC
Confidence 235666655322 1111 222222345789999999987777653
No 340
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=95.18 E-value=0.61 Score=47.32 Aligned_cols=148 Identities=9% Similarity=-0.069 Sum_probs=82.0
Q ss_pred cceEEEEEeCCCCEEEEEecccEEEEEEeccCee------eEEec--cCCCceeEEEecCCCCEEEEEECCCeEEEEeCC
Q psy3053 623 MTLSSLCILPDNCTMLVGCWDSCVVIYDVECGRI------VTELA--GHEDAISCVAWDEKRKRLISGSWDCTVRVWNTG 694 (917)
Q Consensus 623 ~~V~sl~~spd~~~Lasgs~Dg~I~Iwdl~tg~~------i~~l~--~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~ 694 (917)
..+..++|+|++.+.++ .+|.++-.+..++.. -..+- +-. .-.++.|.++|.+.++ .||.|.-++-.
T Consensus 41 ~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~-~F~a~~fD~~G~LYav--~dG~iyr~~pP 115 (236)
T 1tl2_A 41 SNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWN-QFQFLFFDPNGYLYAV--SKDKLYKASPP 115 (236)
T ss_dssp TTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGG-GCSEEEECTTSCEEEE--ETTEEEEESCC
T ss_pred ccceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEecccccc-cceEEEECCCCCEEEe--CCCEEEEeCCC
Confidence 35779999999987766 677766555433211 11110 111 1478899999987777 56988877753
Q ss_pred CCCCC-ccCCcceeeeccCCCceEEEEEeCCCCEEEEEECCCeEEEEECCCCe------eeEEecCCCCCCeEEEEEecC
Q psy3053 695 ASWSH-MKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGELIIWSLENHL------MTQQLSDDINASVNGVLFSED 767 (917)
Q Consensus 695 ~~~~~-~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~dG~I~iwDl~~~~------~~~~l~~~h~~~V~~v~fspd 767 (917)
+.... .... ....-...-..+..+.+.|+|.+.++. ||.++-+...++. ....+-...-..-+.+.|.++
T Consensus 116 ~~~~~~Wl~~-a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~~ 192 (236)
T 1tl2_A 116 QSDTDNWIAR-ATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSSV 192 (236)
T ss_dssp CSTTCCHHHH-SEEEECSSGGGEEEEEECTTSCEEEEE--TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECTT
T ss_pred cCCCCceecc-ccEeccCCCCceEEEEECCCceEEEEe--CCcEEecCCCCCCCcccccccceeccCCcceEEEEEECCC
Confidence 32111 0000 001111122467999999999988877 7776543332211 011111122224455668888
Q ss_pred CCEEEEEeCCCeE
Q psy3053 768 GCRVLSCGNNCML 780 (917)
Q Consensus 768 g~~L~s~s~Dg~I 780 (917)
|...++. ++.+
T Consensus 193 G~l~~v~--~g~~ 203 (236)
T 1tl2_A 193 GTLFGVQ--GGKF 203 (236)
T ss_dssp SCEEEEE--TTEE
T ss_pred CcEEEEe--CCeE
Confidence 8766665 6543
No 341
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=94.72 E-value=3.3 Score=44.19 Aligned_cols=179 Identities=11% Similarity=-0.063 Sum_probs=101.2
Q ss_pred EEEEeCCCCEEEEEECC--------------CeEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEEe----CCCe
Q psy3053 718 CLAISKDNNQLAVGTEA--------------GELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCG----NNCM 779 (917)
Q Consensus 718 ~l~~spdg~~Lasgs~d--------------G~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s----~Dg~ 779 (917)
+--++++|+.|.-+... +.|+..++..++...... .. +..++++++.|+-+. ....
T Consensus 57 ~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~~l~~----~~--~~~~s~~g~~Iy~~~~~~~~~~~ 130 (302)
T 3s25_A 57 AMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTVLDP----DP--CIYASLIGNYIYYLHYDTQTATS 130 (302)
T ss_dssp EEEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCEEEEC----SC--EEEEEEETTEEEEEEESSSSCEE
T ss_pred eeeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcceEeec----CC--ccEEEEeCCEEEEEeecCCCCce
Confidence 34557888888776543 467888887765333222 11 236788888888776 3445
Q ss_pred EEEEECCCCeEEEEeecCCceEEEEEeCCCEEEEEeCCCeEEEEECCCCEEEEEEecCCCceEEEeecCCEEEEEeCC--
Q psy3053 780 LNVYDLTTGMQVCNKVFEEKLLCLSWAGEEKVILGGALGMVYLVDLIQVQLLKQVRAHKDAVLSLHFDNCTMLVGCWD-- 857 (917)
Q Consensus 780 I~iwDl~tg~~i~~~~~~~~i~~l~~s~~~~lv~gs~dG~I~vwdl~~~~~i~~l~~h~~~V~sis~dg~~Lasgs~D-- 857 (917)
|+..++............. ..+.|.++..+.+......|.+.++..+.....+.+. . -..+.|++++|+-...+
T Consensus 131 Iy~~~~dGs~~~~lt~~~~--~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~~l~~~~-~-~~~~~P~g~~iy~t~~~~~ 206 (302)
T 3s25_A 131 LYRIRIDGEEKKKIKNHYL--FTCNTSDRYFYYNNPKNGQLYRYDTASQSEALFYDCN-C-YKPVVLDDTNVYYMDVNRD 206 (302)
T ss_dssp EEEEETTSCCCEEEESSCC--CCSEEETTEEEEECTTTCCEEEEETTTTEEEEEECSC-E-EEEEEEETTEEEEEEGGGT
T ss_pred EEEEECCCCCeEEEeCCCc--eEeeEECCEEEEEeCCCceEEEEECCCCCEEEEeCCC-c-cceeeecCCEEEEEEcCCC
Confidence 6666665433222222211 3456666633444444678999998777654433321 1 12356888888776544
Q ss_pred CeEEEEECcCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeC--CCcEEEEecCcce
Q psy3053 858 SCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGNL--VGAPKLYATEFYL 911 (917)
Q Consensus 858 G~I~Iwdl~tg~~l~~l~~h~~~V~slafSpdg~~LaSgs~--DG~V~IWdl~~~l 911 (917)
..|..-+++.+. ...+. +..+ ..|+|++.+|+-++. .+.|..-++++..
T Consensus 207 ~~I~~~~ldG~~-~~~Lt--~~~~--~~~~~~g~~Iy~~~~~~~~~i~~~~~DG~~ 257 (302)
T 3s25_A 207 NAIVHVNINNPN-PVVLT--EANI--EHYNVYGSLIFYQRGGDNPALCVVKNDGTG 257 (302)
T ss_dssp TEEEEECSSSCC-CEECS--CSCE--EEEEEETTEEEEEECSSSCEEEEEETTSCC
T ss_pred cEEEEEECCCCC-eEEEe--CCCc--ceEEECCCEEEEEECCCCcEEEEEECCCCc
Confidence 356666666444 33333 2233 237777888776532 3456666666543
No 342
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=94.66 E-value=0.7 Score=58.80 Aligned_cols=245 Identities=14% Similarity=0.136 Sum_probs=135.9
Q ss_pred ccEEEEEEeccCeeeEEeccCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEe
Q psy3053 643 DSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAIS 722 (917)
Q Consensus 643 Dg~I~Iwdl~tg~~i~~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~s 722 (917)
..+|.|.|+.++..+..- .-..-+.-.+|..+.+|.-+ ..++.|+|+++. ..........+|.--.|-
T Consensus 47 ~~~vvIidl~~~~~~~rr---pi~AdsAIMnP~~~iiALra-g~~lQiFnl~~k--------~klks~~~~e~VvfWkWi 114 (1630)
T 1xi4_A 47 QAQVVIIDMNDPSNPIRR---PISADSAIMNPASKVIALKA-GKTLQIFNIEMK--------SKMKAHTMTDDVTFWKWI 114 (1630)
T ss_pred CceEEEEECCCCCCcccc---cccchhhccCCCcceEEEec-CCeEEEeehHHh--------hhhcccccCCCceEEEec
Confidence 346888888876543211 11122334577777666654 789999999775 222222334556666665
Q ss_pred CCCCEEEEEECCCeEEEEECCCCeeeEEecCCC----CCCeEEEEEecCCCEEEEEe-------CCCeEEEEECCCCeEE
Q psy3053 723 KDNNQLAVGTEAGELIIWSLENHLMTQQLSDDI----NASVNGVLFSEDGCRVLSCG-------NNCMLNVYDLTTGMQV 791 (917)
Q Consensus 723 pdg~~Lasgs~dG~I~iwDl~~~~~~~~l~~~h----~~~V~~v~fspdg~~L~s~s-------~Dg~I~iwDl~tg~~i 791 (917)
.+.. |+..+ +..|+.|++........+...| +..|..-..+++.++++..| -.|.+.+|+.+.+...
T Consensus 115 s~~~-l~lVT-~~aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~sQ 192 (1630)
T 1xi4_A 115 SLNT-VALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQ 192 (1630)
T ss_pred CCCe-eEEEc-CCeEEEeccCCCCccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccccch
Confidence 5444 33333 3479999997533222221122 45677778888999888655 3478888888655332
Q ss_pred EEeecC--------------CceEEEEEeCCCEEEEEeCCCeEEEEECCCC---EE------EEEEec---CCCceEE--
Q psy3053 792 CNKVFE--------------EKLLCLSWAGEEKVILGGALGMVYLVDLIQV---QL------LKQVRA---HKDAVLS-- 843 (917)
Q Consensus 792 ~~~~~~--------------~~i~~l~~s~~~~lv~gs~dG~I~vwdl~~~---~~------i~~l~~---h~~~V~s-- 843 (917)
....|. ..+.|++.... ..|.+++.++... .+ +...-. ..+-..+
T Consensus 193 ~iegha~~F~~~~~~~~~~~~~l~~f~~~~~-------~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~ 265 (1630)
T 1xi4_A 193 PIEGHAASFAQFKMEGNAEESTLFCFAVRGQ-------AGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQ 265 (1630)
T ss_pred hhhHhHhhhheeccCCCCCCceEEEEEEecC-------CCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEE
Confidence 111111 12333333211 1268888887442 11 100100 1111223
Q ss_pred EeecCCEEEEEeCCCeEEEEECcCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecC
Q psy3053 844 LHFDNCTMLVGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGNLVGAPKLYATE 908 (917)
Q Consensus 844 is~dg~~Lasgs~DG~I~Iwdl~tg~~l~~l~~h~~~V~slafSpdg~~LaSgs~DG~V~IWdl~ 908 (917)
+++.-..+..-+.-|.|.++|+.||.++..-+-...+|-..+-+....-++.....|.|.--.++
T Consensus 266 vs~k~g~iy~itk~G~~~~~d~~t~~~i~~~ris~~~iF~~~~~~~~~g~~~vnr~G~vl~v~v~ 330 (1630)
T 1xi4_A 266 ISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVLSVCVE 330 (1630)
T ss_pred eccccCEEEEEecCceEEEEecccchhhhhccccCCceEEeccCCCCCceEEEcCCceEEEEEEc
Confidence 35566678888899999999999999876655445555544444433334444456655544443
No 343
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=94.20 E-value=2.3 Score=44.91 Aligned_cols=221 Identities=10% Similarity=-0.001 Sum_probs=111.3
Q ss_pred ceEEEEEeCCCcEEEEEecCCceEEEeccCCceeeeeeccccceEEEEEeCCCCEEEEEecccEEEEEEeccCeeeEEec
Q psy3053 582 AITAVAICGEGISVASVGRDAMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTMLVGCWDSCVVIYDVECGRIVTELA 661 (917)
Q Consensus 582 ~Vtsv~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~~~~~~~~V~sl~~spd~~~Lasgs~Dg~I~Iwdl~tg~~i~~l~ 661 (917)
.|..|+..... .++. . ||.|..|-....-++.........|..++...+. .++. . ||.|+.|-......+..-.
T Consensus 25 ~i~~ia~G~~h-~~~l-~-~G~v~~wG~n~~Gqlg~p~~~~~~i~~ia~G~~h-s~~l-~-~G~v~~wG~n~~Gqlg~P~ 98 (282)
T 3qhy_B 25 GVDAIAGGYFH-GLAL-K-GGKVLGWGANLNGQLTMPAATQSGVDAIAAGNYH-SLAL-K-DGEVIAWGGNEDGQTTVPA 98 (282)
T ss_dssp SCCEEEECSSE-EEEE-E-TTEEEEEECCSSSTTSCCGGGGSCCCEEEECSSE-EEEE-E-TTEEEEEECCTTSTTCCCG
T ss_pred CCcEEEeCCCe-EEEE-E-CCEEEEEeCCCCCCCCCCccCCCCEEEEEeCCCE-EEEE-E-CCEEEEeeCCCCCCCCCCc
Confidence 45566554432 2222 4 8888888765433222111223356666544332 3333 4 8999999765422111111
Q ss_pred cCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEEEECCCeEEEEE
Q psy3053 662 GHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGELIIWS 741 (917)
Q Consensus 662 ~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~dG~I~iwD 741 (917)
.-...|..++...+ ..+.-. ||.|..|-......... .......|..++.... ..++-. ||.++.|-
T Consensus 99 ~~~~~v~~ia~G~~--hs~al~-~G~v~~wG~n~~gqlg~-------~~~~~~~i~~i~~G~~--~~~~l~-~G~v~~wG 165 (282)
T 3qhy_B 99 EARSGVDAIAAGAW--ASYALK-DGKVIAWGDDSDGQTTV-------PAEAQSGVTALDGGVY--TALAVK-NGGVIAWG 165 (282)
T ss_dssp GGSSSEEEEEEETT--EEEEEE-TTEEEEEECCTTSTTSC-------CGGGGSSEEEEEECSS--EEEEEE-TTEEEEEE
T ss_pred ccCCCeEEEECcCC--EEEEEe-CCeEEEecCCCCCcCCC-------CccCCCCeEEEEcccC--EEEEEE-CCEEEEec
Confidence 11346777777653 334445 99999997654321111 1112345666665433 233334 79999997
Q ss_pred CCCCeeeEEecCCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCC-eEEEEeecCCceEEEEEeCCCEEEEEeCCCeE
Q psy3053 742 LENHLMTQQLSDDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTG-MQVCNKVFEEKLLCLSWAGEEKVILGGALGMV 820 (917)
Q Consensus 742 l~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~tg-~~i~~~~~~~~i~~l~~s~~~~lv~gs~dG~I 820 (917)
......+. ........|..++...+. .++- .||.+..|-.... +.-........+..++......++.. +|.|
T Consensus 166 ~n~~gqlg-~p~~~~~~v~~i~~G~~h--s~al-~~G~v~~wG~n~~gqlg~p~~~~~~v~~i~~G~~h~~al~--~g~v 239 (282)
T 3qhy_B 166 DNYFGQTT-VPAEAQSGVDDVAGGIFH--SLAL-KDGKVIAWGDNRYKQTTVPTEALSGVSAIASGEWYSLALK--NGKV 239 (282)
T ss_dssp CCTTSTTS-CCGGGGSSEEEEEECSSE--EEEE-ETTEEEEEECCTTSTTCCCGGGGSSCCEEEECSSCEEEEE--TTEE
T ss_pred CCCCCCCC-CceecCCCeEEEEecCCE--EEEE-ECCeEEEEECCCCCCCCCCcccCCCceEEEcCCCEEEEEE--CCEE
Confidence 65422211 111123456666655433 2223 5888998865432 11111112234566665555344444 8888
Q ss_pred EEEECCC
Q psy3053 821 YLVDLIQ 827 (917)
Q Consensus 821 ~vwdl~~ 827 (917)
+.|-...
T Consensus 240 ~~wG~n~ 246 (282)
T 3qhy_B 240 IAWGSSR 246 (282)
T ss_dssp EEESTTC
T ss_pred EEecCCC
Confidence 8886544
No 344
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=93.97 E-value=1.1 Score=57.02 Aligned_cols=229 Identities=14% Similarity=0.113 Sum_probs=125.6
Q ss_pred EEeCCCcEEEEEecCCceEEEeccCCceeeeeeccccceEEEEEeCCCCEEEEEecccEEEEEEeccC-eeeEEeccC--
Q psy3053 587 AICGEGISVASVGRDAMLKIHSLKTGRQERSAVLSSMTLSSLCILPDNCTMLVGCWDSCVVIYDVECG-RIVTELAGH-- 663 (917)
Q Consensus 587 ~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~~~~~~~~V~sl~~spd~~~Lasgs~Dg~I~Iwdl~tg-~~i~~l~~H-- 663 (917)
..+|..+.+|.-+ ..++.|+|+++...+++..... +|.-=.|..+. .|+..+ +..|+-|++... .+++.+..|
T Consensus 72 IMnP~~~iiALra-g~~lQiFnl~~k~klks~~~~e-~VvfWkWis~~-~l~lVT-~~aVyHW~~~~~s~P~k~fdR~~~ 147 (1630)
T 1xi4_A 72 IMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTD-DVTFWKWISLN-TVALVT-DNAVYHWSMEGESQPVKMFDRHSS 147 (1630)
T ss_pred ccCCCcceEEEec-CCeEEEeehHHhhhhcccccCC-CceEEEecCCC-eeEEEc-CCeEEEeccCCCCccHHHHhcchh
Confidence 3456666555443 7889999999988887776654 34444454443 333332 567999999743 344444444
Q ss_pred --CCceeEEEecCCCCEEEEEE-------CCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEe--C-CCCEEEEE
Q psy3053 664 --EDAISCVAWDEKRKRLISGS-------WDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAIS--K-DNNQLAVG 731 (917)
Q Consensus 664 --~~~Vt~l~~spd~~~L~Sgs-------~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~s--p-dg~~Lasg 731 (917)
...|..-..+++.++++..| -.|.+.+|.++.+.+ ....+|.+....+... + ....++.+
T Consensus 148 L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~s--------Q~iegha~~F~~~~~~~~~~~~~l~~f~ 219 (1630)
T 1xi4_A 148 LAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVS--------QPIEGHAASFAQFKMEGNAEESTLFCFA 219 (1630)
T ss_pred cccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccccc--------hhhhHhHhhhheeccCCCCCCceEEEEE
Confidence 34566677788888776443 357888998876521 1112222222111111 0 11122222
Q ss_pred EC---CCeEEEEECCCC---eee------EEecC--CCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCCeEEEEeecC
Q psy3053 732 TE---AGELIIWSLENH---LMT------QQLSD--DINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCNKVFE 797 (917)
Q Consensus 732 s~---dG~I~iwDl~~~---~~~------~~l~~--~h~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~tg~~i~~~~~~ 797 (917)
.. .|.++|.++... ... ....+ ...+-..++..++.-..+...+.-|.++++|+.+|..+......
T Consensus 220 ~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~~~i~~~ris 299 (1630)
T 1xi4_A 220 VRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRIS 299 (1630)
T ss_pred EecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEecCceEEEEecccchhhhhcccc
Confidence 11 367888887543 110 00110 12334456777887778888889999999999999887554432
Q ss_pred C-ceEEEEEe-CCCEEEEEeCCCeEEEEECCC
Q psy3053 798 E-KLLCLSWA-GEEKVILGGALGMVYLVDLIQ 827 (917)
Q Consensus 798 ~-~i~~l~~s-~~~~lv~gs~dG~I~vwdl~~ 827 (917)
+ .|...+.+ +.+-+++....|.|.-..+..
T Consensus 300 ~~~iF~~~~~~~~~g~~~vnr~G~vl~v~v~~ 331 (1630)
T 1xi4_A 300 GETIFVTAPHEATAGIIGVNRKGQVLSVCVEE 331 (1630)
T ss_pred CCceEEeccCCCCCceEEEcCCceEEEEEEcc
Confidence 2 22222222 222334444455444444433
No 345
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=93.93 E-value=0.95 Score=45.93 Aligned_cols=148 Identities=8% Similarity=-0.072 Sum_probs=78.7
Q ss_pred ceEEEEEeCCCcEEEEEecCCceEEEeccCCceeeeeeccccc--------eEEEEEeCCCCEEEEEecccEEEEEEecc
Q psy3053 582 AITAVAICGEGISVASVGRDAMLKIHSLKTGRQERSAVLSSMT--------LSSLCILPDNCTMLVGCWDSCVVIYDVEC 653 (917)
Q Consensus 582 ~Vtsv~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~~~~~~~~--------V~sl~~spd~~~Lasgs~Dg~I~Iwdl~t 653 (917)
.++.++|+|+|.+.+. .+|.+.-.+..+.... ........ ..++.|.|+|.+.++ .||.|+-++-.+
T Consensus 42 ~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~-~W~~s~t~IG~~Gw~~F~a~~fD~~G~LYav--~dG~iyr~~pP~ 116 (236)
T 1tl2_A 42 NFKFLFLSPGGELYGV--LNDKIYKGTPPTHDND-NWMGRAKKIGNGGWNQFQFLFFDPNGYLYAV--SKDKLYKASPPQ 116 (236)
T ss_dssp TCSEEEECTTSCEEEE--ETTEEEEESCCCSTTC-CHHHHCEEEECSCGGGCSEEEECTTSCEEEE--ETTEEEEESCCC
T ss_pred cceeEEECCCccEEEE--eCCeEEEECCCCCCcc-cccccccEecccccccceEEEECCCCCEEEe--CCCEEEEeCCCc
Confidence 5679999999985555 6776555444332111 11111112 367889999988877 669887776533
Q ss_pred Cee-------eEEeccCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCC
Q psy3053 654 GRI-------VTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNN 726 (917)
Q Consensus 654 g~~-------i~~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~ 726 (917)
... ...-.+--..+.+|.+.|+|.+-+.. |+.+.-+...+.....-...........-..-+-+.|.+++.
T Consensus 117 ~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~~G~ 194 (236)
T 1tl2_A 117 SDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSSVGT 194 (236)
T ss_dssp STTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECTTSC
T ss_pred CCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEEecCCCCCCCcccccccceeccCCcceEEEEEECCCCc
Confidence 111 11111122568999999999877665 777543322211100000000000112222344466777777
Q ss_pred EEEEEECCCeEE
Q psy3053 727 QLAVGTEAGELI 738 (917)
Q Consensus 727 ~Lasgs~dG~I~ 738 (917)
+.++. +|.++
T Consensus 195 l~~v~--~g~~Y 204 (236)
T 1tl2_A 195 LFGVQ--GGKFY 204 (236)
T ss_dssp EEEEE--TTEEE
T ss_pred EEEEe--CCeEE
Confidence 66665 66443
No 346
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=93.69 E-value=1.8 Score=51.96 Aligned_cols=199 Identities=10% Similarity=0.028 Sum_probs=102.6
Q ss_pred CCCcEEEEEecC----CceEEEeccCCceeeee-e-----cccc-ceEEEEEeC-CCCEEEEEecc------cEEEEEEe
Q psy3053 590 GEGISVASVGRD----AMLKIHSLKTGRQERSA-V-----LSSM-TLSSLCILP-DNCTMLVGCWD------SCVVIYDV 651 (917)
Q Consensus 590 pdg~~Lasgs~D----g~I~IWd~~t~~~~~~~-~-----~~~~-~V~sl~~sp-d~~~Lasgs~D------g~I~Iwdl 651 (917)
.++..++.||.+ ..+.+||..+++-.... . .... .-.+++..+ +++.++.|+.+ +.+.+||.
T Consensus 396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~ 475 (695)
T 2zwa_A 396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDM 475 (695)
T ss_dssp CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEET
T ss_pred ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeC
Confidence 456667777653 35778888776533222 1 1111 112333443 77888888754 35788888
Q ss_pred ccCeeeEE--eccCCCceeEEEecCCCCEEEEEECCC--eEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCC-CC
Q psy3053 652 ECGRIVTE--LAGHEDAISCVAWDEKRKRLISGSWDC--TVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKD-NN 726 (917)
Q Consensus 652 ~tg~~i~~--l~~H~~~Vt~l~~spd~~~L~Sgs~Dg--tI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd-g~ 726 (917)
.+.+-... +......- +++...++..++.|+.++ .+.+||..+..-...... ...........++.+..+ +.
T Consensus 476 ~t~~W~~~~~~p~~R~~h-~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~--g~~p~~r~~~~a~v~~~~~~~ 552 (695)
T 2zwa_A 476 KTREWSMIKSLSHTRFRH-SACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPK--DEFFQNSLVSAGLEFDPVSKQ 552 (695)
T ss_dssp TTTEEEECCCCSBCCBSC-EEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCS--SGGGGSCCBSCEEEEETTTTE
T ss_pred CCCcEEECCCCCCCcccc-eEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCC--CCCCCcccceeEEEEeCCCCE
Confidence 87643322 21111111 223323778888888665 688999877521000000 000111122233555655 66
Q ss_pred EEEEEEC--C-----CeEEEEECCCCee-----eEEecC--CCCCCeEEEEEecCCCEEEEEeCC--------CeEEEEE
Q psy3053 727 QLAVGTE--A-----GELIIWSLENHLM-----TQQLSD--DINASVNGVLFSEDGCRVLSCGNN--------CMLNVYD 784 (917)
Q Consensus 727 ~Lasgs~--d-----G~I~iwDl~~~~~-----~~~l~~--~h~~~V~~v~fspdg~~L~s~s~D--------g~I~iwD 784 (917)
+++.|+. + ..+.+||+.+..- ...+.. .....-.+++...+++.++.||.+ ..+.+||
T Consensus 553 iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd 632 (695)
T 2zwa_A 553 GIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGTSPSGLFDRTNSIISLD 632 (695)
T ss_dssp EEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTEEEEECCBCSSCCCCTTTSEEEEE
T ss_pred EEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCCEEEEECCccCCCCCCCCCeEEEEE
Confidence 7777765 2 4588999887761 122211 111111233333336677777642 3577888
Q ss_pred CCCCeEE
Q psy3053 785 LTTGMQV 791 (917)
Q Consensus 785 l~tg~~i 791 (917)
+.+++-.
T Consensus 633 ~~t~~W~ 639 (695)
T 2zwa_A 633 PLSETLT 639 (695)
T ss_dssp TTTTEEE
T ss_pred CCCCeEE
Confidence 8776543
No 347
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=93.19 E-value=1.9 Score=45.43 Aligned_cols=221 Identities=12% Similarity=0.037 Sum_probs=117.1
Q ss_pred CceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEEEECCCeEEEEECCC
Q psy3053 665 DAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGELIIWSLEN 744 (917)
Q Consensus 665 ~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~dG~I~iwDl~~ 744 (917)
..|..++.... ..+.-. ||.|..|-.........+ ......|..++..... .++. . ||.|+.|-...
T Consensus 24 ~~i~~ia~G~~--h~~~l~-~G~v~~wG~n~~Gqlg~p-------~~~~~~i~~ia~G~~h-s~~l-~-~G~v~~wG~n~ 90 (282)
T 3qhy_B 24 SGVDAIAGGYF--HGLALK-GGKVLGWGANLNGQLTMP-------AATQSGVDAIAAGNYH-SLAL-K-DGEVIAWGGNE 90 (282)
T ss_dssp SSCCEEEECSS--EEEEEE-TTEEEEEECCSSSTTSCC-------GGGGSCCCEEEECSSE-EEEE-E-TTEEEEEECCT
T ss_pred CCCcEEEeCCC--eEEEEE-CCEEEEEeCCCCCCCCCC-------ccCCCCEEEEEeCCCE-EEEE-E-CCEEEEeeCCC
Confidence 35777776543 333335 999999986544211111 1122356666665432 2333 4 89999997654
Q ss_pred CeeeEEecCCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCC-CeEEEEeecCCceEEEEEeCCCEEEEEeCCCeEEEE
Q psy3053 745 HLMTQQLSDDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTT-GMQVCNKVFEEKLLCLSWAGEEKVILGGALGMVYLV 823 (917)
Q Consensus 745 ~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~t-g~~i~~~~~~~~i~~l~~s~~~~lv~gs~dG~I~vw 823 (917)
.-.+.. .......|..++...+ +.+.-. ||.|+.|-... ++.-........+..++......++ -. +|.|+.|
T Consensus 91 ~Gqlg~-P~~~~~~v~~ia~G~~--hs~al~-~G~v~~wG~n~~gqlg~~~~~~~~i~~i~~G~~~~~~-l~-~G~v~~w 164 (282)
T 3qhy_B 91 DGQTTV-PAEARSGVDAIAAGAW--ASYALK-DGKVIAWGDDSDGQTTVPAEAQSGVTALDGGVYTALA-VK-NGGVIAW 164 (282)
T ss_dssp TSTTCC-CGGGSSSEEEEEEETT--EEEEEE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECSSEEEE-EE-TTEEEEE
T ss_pred CCCCCC-CcccCCCeEEEECcCC--EEEEEe-CCeEEEecCCCCCcCCCCccCCCCeEEEEcccCEEEE-EE-CCEEEEe
Confidence 322111 1112346777776654 344444 89999997543 2211111223456666665553333 34 7999999
Q ss_pred ECCCCEEEEEEecCCCceEEEeecCCEEEEEeCCCeEEEEECcCCeEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEE
Q psy3053 824 DLIQVQLLKQVRAHKDAVLSLHFDNCTMLVGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWDEKRKRLISGNLVGAPK 903 (917)
Q Consensus 824 dl~~~~~i~~l~~h~~~V~sis~dg~~Lasgs~DG~I~Iwdl~tg~~l~~l~~h~~~V~slafSpdg~~LaSgs~DG~V~ 903 (917)
-......+..-..-...|..++......++- .||.|..|-......+..-......|..++..... .++.. ||.|.
T Consensus 165 G~n~~gqlg~p~~~~~~v~~i~~G~~hs~al-~~G~v~~wG~n~~gqlg~p~~~~~~v~~i~~G~~h-~~al~--~g~v~ 240 (282)
T 3qhy_B 165 GDNYFGQTTVPAEAQSGVDDVAGGIFHSLAL-KDGKVIAWGDNRYKQTTVPTEALSGVSAIASGEWY-SLALK--NGKVI 240 (282)
T ss_dssp ECCTTSTTSCCGGGGSSEEEEEECSSEEEEE-ETTEEEEEECCTTSTTCCCGGGGSSCCEEEECSSC-EEEEE--TTEEE
T ss_pred cCCCCCCCCCceecCCCeEEEEecCCEEEEE-ECCeEEEEECCCCCCCCCCcccCCCceEEEcCCCE-EEEEE--CCEEE
Confidence 7654211111111134677776655554444 69999999654321111111112356777655443 33333 89999
Q ss_pred EEecC
Q psy3053 904 LYATE 908 (917)
Q Consensus 904 IWdl~ 908 (917)
.|--+
T Consensus 241 ~wG~n 245 (282)
T 3qhy_B 241 AWGSS 245 (282)
T ss_dssp EESTT
T ss_pred EecCC
Confidence 98665
No 348
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=92.84 E-value=5.2 Score=47.96 Aligned_cols=194 Identities=10% Similarity=0.106 Sum_probs=103.1
Q ss_pred CCCCEEEEEecc----cEEEEEEeccCeeeEEe-c------cCCCceeEEEecC-CCCEEEEEECCC------eEEEEeC
Q psy3053 632 PDNCTMLVGCWD----SCVVIYDVECGRIVTEL-A------GHEDAISCVAWDE-KRKRLISGSWDC------TVRVWNT 693 (917)
Q Consensus 632 pd~~~Lasgs~D----g~I~Iwdl~tg~~i~~l-~------~H~~~Vt~l~~sp-d~~~L~Sgs~Dg------tI~vWdl 693 (917)
.++..++.|+.+ +.+.+||..+++-...- . .....-.+++..+ ++..++.|+.++ .+.+||.
T Consensus 396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~ 475 (695)
T 2zwa_A 396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDM 475 (695)
T ss_dssp CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEET
T ss_pred ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeC
Confidence 456666677643 45788888876543322 1 1111112333333 667777777543 4778887
Q ss_pred CCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEEEECCC--eEEEEECCCCeeeEEec----CCCCCCeEEEEEecC
Q psy3053 694 GASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAG--ELIIWSLENHLMTQQLS----DDINASVNGVLFSED 767 (917)
Q Consensus 694 ~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~dG--~I~iwDl~~~~~~~~l~----~~h~~~V~~v~fspd 767 (917)
.+.. .. ... .......-.+++...++.+++.|+.++ .+.+||..+..-...-. ........++.+..+
T Consensus 476 ~t~~--W~---~~~-~~p~~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~ 549 (695)
T 2zwa_A 476 KTRE--WS---MIK-SLSHTRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPV 549 (695)
T ss_dssp TTTE--EE---ECC-CCSBCCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETT
T ss_pred CCCc--EE---ECC-CCCCCcccceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCC
Confidence 7642 00 000 001111112233324788888887665 68999998875433221 011222233555655
Q ss_pred -CCEEEEEeC--C-----CeEEEEECCCCe------EEEEee---cC-CceEEEEEeCCCEEEEEeC--------CCeEE
Q psy3053 768 -GCRVLSCGN--N-----CMLNVYDLTTGM------QVCNKV---FE-EKLLCLSWAGEEKVILGGA--------LGMVY 821 (917)
Q Consensus 768 -g~~L~s~s~--D-----g~I~iwDl~tg~------~i~~~~---~~-~~i~~l~~s~~~~lv~gs~--------dG~I~ 821 (917)
++.++.||. + +.+.+||+.+.. -..... .. ....++....+..++.|+. ...+.
T Consensus 550 ~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~ 629 (695)
T 2zwa_A 550 SKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGTSPSGLFDRTNSII 629 (695)
T ss_dssp TTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTEEEEECCBCSSCCCCTTTSEE
T ss_pred CCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCCEEEEECCccCCCCCCCCCeEE
Confidence 667777765 2 458899998876 221111 11 1123333442445666764 35699
Q ss_pred EEECCCCEEE
Q psy3053 822 LVDLIQVQLL 831 (917)
Q Consensus 822 vwdl~~~~~i 831 (917)
+||+.+.+..
T Consensus 630 ~yd~~t~~W~ 639 (695)
T 2zwa_A 630 SLDPLSETLT 639 (695)
T ss_dssp EEETTTTEEE
T ss_pred EEECCCCeEE
Confidence 9999887654
No 349
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=92.67 E-value=13 Score=40.26 Aligned_cols=150 Identities=15% Similarity=0.065 Sum_probs=82.1
Q ss_pred CcceEEEEEeCCCcEEEEEecCCceEEEeccCCceeee--e----eccccceEEEEEeCC---CCEEEEE---ecccEEE
Q psy3053 580 KEAITAVAICGEGISVASVGRDAMLKIHSLKTGRQERS--A----VLSSMTLSSLCILPD---NCTMLVG---CWDSCVV 647 (917)
Q Consensus 580 ~~~Vtsv~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~--~----~~~~~~V~sl~~spd---~~~Lasg---s~Dg~I~ 647 (917)
-..-++|+|.|||..+++--..|.|++++..+++.... + .........++++|+ +..|.+. ..++.|.
T Consensus 31 L~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v~ 110 (347)
T 3das_A 31 LNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRIV 110 (347)
T ss_dssp CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEEE
T ss_pred CCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEEE
Confidence 34567999999998766654489999988665543211 1 123456788999995 3444432 2345566
Q ss_pred EEEeccC----------eee-EEec-cCCCceeEEEecCCCCEEEEEEC-------------CCeEEEEeCCCCCCCccC
Q psy3053 648 IYDVECG----------RIV-TELA-GHEDAISCVAWDEKRKRLISGSW-------------DCTVRVWNTGASWSHMKP 702 (917)
Q Consensus 648 Iwdl~tg----------~~i-~~l~-~H~~~Vt~l~~spd~~~L~Sgs~-------------DgtI~vWdl~~~~~~~~~ 702 (917)
-|....+ +.+ ..+. +....-..|+|.|||.+.++.+. .|.|.-.+.........+
T Consensus 111 R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ip~~nP 190 (347)
T 3das_A 111 RMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEPAPGNP 190 (347)
T ss_dssp EEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSBCTTCS
T ss_pred EEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCCccCCCC
Confidence 6665541 111 1222 11123467999999987777542 244444443322100001
Q ss_pred C-cceeeeccCCCceEEEEEeCCCCEEEE
Q psy3053 703 S-KSLVSQLDLDNRIKCLAISKDNNQLAV 730 (917)
Q Consensus 703 ~-~~~~~~~~h~~~V~~l~~spdg~~Las 730 (917)
. .......++. ....++|+|+|.+.++
T Consensus 191 f~~~~i~a~G~R-Np~Gla~dp~G~L~~~ 218 (347)
T 3das_A 191 FPGSPVYSYGHR-NVQGLAWDDKQRLFAS 218 (347)
T ss_dssp STTCCEEEBCCS-BCCEEEECTTCCEEEE
T ss_pred CCCCeEEeeCCC-CcceEEECCCCCEEEE
Confidence 0 0112223443 3568899998775554
No 350
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=90.83 E-value=7 Score=44.19 Aligned_cols=109 Identities=15% Similarity=0.147 Sum_probs=61.1
Q ss_pred eEEEEEeCCCCEEEEEecccEEEEEEeccCeee--EEecc------CCCceeEEEecCC---CCEEEEEEC---------
Q psy3053 625 LSSLCILPDNCTMLVGCWDSCVVIYDVECGRIV--TELAG------HEDAISCVAWDEK---RKRLISGSW--------- 684 (917)
Q Consensus 625 V~sl~~spd~~~Lasgs~Dg~I~Iwdl~tg~~i--~~l~~------H~~~Vt~l~~spd---~~~L~Sgs~--------- 684 (917)
-..++|.|+|+++++-...+.|++++..+++.. ..+.. .......|+|+|+ +..|..+..
T Consensus 29 P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~~~ 108 (454)
T 1cru_A 29 PHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKSTDK 108 (454)
T ss_dssp EEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC--C
T ss_pred ceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCCcc
Confidence 468999999987776544457888876555432 22221 2456779999995 455544332
Q ss_pred ----CCeEEEEeCCCCCCCccCCcceeeec--cCCCceEEEEEeCCCCEEEEEEC
Q psy3053 685 ----DCTVRVWNTGASWSHMKPSKSLVSQL--DLDNRIKCLAISKDNNQLAVGTE 733 (917)
Q Consensus 685 ----DgtI~vWdl~~~~~~~~~~~~~~~~~--~h~~~V~~l~~spdg~~Lasgs~ 733 (917)
...|.-++.............+.... ........++|.|+|.+.++.+.
T Consensus 109 ~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd 163 (454)
T 1cru_A 109 ELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD 163 (454)
T ss_dssp CSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred ccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECC
Confidence 13455555433211111111122111 12235789999999987776543
No 351
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=89.85 E-value=26 Score=38.35 Aligned_cols=230 Identities=14% Similarity=0.070 Sum_probs=126.3
Q ss_pred CCEEEEEecccEEEEEEeccC-e----------eeEEecc-CCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCc-
Q psy3053 634 NCTMLVGCWDSCVVIYDVECG-R----------IVTELAG-HEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHM- 700 (917)
Q Consensus 634 ~~~Lasgs~Dg~I~Iwdl~tg-~----------~i~~l~~-H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~- 700 (917)
....+.-..||.|+.|-.... + ....+.. ....+..++.+......+..+.||.|..|-.......-
T Consensus 62 ~~~~~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~~~~v~i~~G~~h~~al~~~G~v~~wG~n~~GqLG~ 141 (389)
T 3kci_A 62 EQTLFAVTADGKLYATGYGAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLGH 141 (389)
T ss_dssp TTEEEEEETTSCEEEEECCGGGTTSSSSSCCEEEEEECGGGTTSCEEEEEECTTCSEEEEEETTSCEEEEECCGGGTTCS
T ss_pred CCeEEEEcCCCcEEEEECCCCCCCCCCCcCCccCCEEcccccCCceeEEEECcCCCeEEEEcCCCCEEEEeCCCCCcCCC
Confidence 344555567888888864321 1 1111221 22345556666666777777899999999754321100
Q ss_pred ---cCCcceeeecc-CCCceEEEEEeCCCCEEEEEECCCeEEEEECCCC-----------eeeEEecCCCCCCeEEEEEe
Q psy3053 701 ---KPSKSLVSQLD-LDNRIKCLAISKDNNQLAVGTEAGELIIWSLENH-----------LMTQQLSDDINASVNGVLFS 765 (917)
Q Consensus 701 ---~~~~~~~~~~~-h~~~V~~l~~spdg~~Lasgs~dG~I~iwDl~~~-----------~~~~~l~~~h~~~V~~v~fs 765 (917)
........... ....|..++. ...+.++-+.+|.|+.|-.... .....+.......|..++..
T Consensus 142 g~~~~~~~p~~v~~l~~~~i~~va~--G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~v~~ia~G 219 (389)
T 3kci_A 142 GNRSPCDRPRVIESLRGIEVVDVAA--GGAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEALQGHRVVDIACG 219 (389)
T ss_dssp SSCCCEEEEEECGGGTTSCEEEEEE--CSSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEEC
T ss_pred CCCccCcCCeEecccCCCeEEEEEe--CcCeEEEEeCCCeEEEeCCCCCCCcCCCCCcccccceEecccCCCeEEEEEEc
Confidence 00000111111 1224555554 3456666778999999965321 11222221233456677665
Q ss_pred cCCCEEEEEeCCCeEEEEECCCC----------eEEE-Eee-c-CCceEEEEEeCCCEEEEEeCCCeEEEEECCCC----
Q psy3053 766 EDGCRVLSCGNNCMLNVYDLTTG----------MQVC-NKV-F-EEKLLCLSWAGEEKVILGGALGMVYLVDLIQV---- 828 (917)
Q Consensus 766 pdg~~L~s~s~Dg~I~iwDl~tg----------~~i~-~~~-~-~~~i~~l~~s~~~~lv~gs~dG~I~vwdl~~~---- 828 (917)
......++...||.|..|-.... .... ... . ...+..++.... ..++-+.+|.|+.|-....
T Consensus 220 ~g~~~t~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~v~~G~~-hs~alt~~G~v~~wG~n~~GqLG 298 (389)
T 3kci_A 220 SGDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSLTGLGVVKVECGSQ-FSVALTKSGAVYTWGKGDYHRLG 298 (389)
T ss_dssp CSSCEEEEEETTTEEEEEECCGGGTTSSSSCCCEEEEEECGGGTTSCEEEEEEETT-EEEEEETTSCEEEEECCGGGTTC
T ss_pred CCCcEEEEEccCCEEEEEeCCCCCCCCCCCCCCccccEEecccCCCcEEEEeCCCC-EEEEEeCCCeEEEEeCCCCCCCC
Confidence 43456677778999999964321 1111 111 1 224666666555 6666688999999965321
Q ss_pred -------EEEEEEec-CCCceEEEeecCCEEEEEeCCCeEEEEECc
Q psy3053 829 -------QLLKQVRA-HKDAVLSLHFDNCTMLVGCWDSCVVIYDVE 866 (917)
Q Consensus 829 -------~~i~~l~~-h~~~V~sis~dg~~Lasgs~DG~I~Iwdl~ 866 (917)
.....+.. ....|..++......++-..||.|+.|-..
T Consensus 299 ~g~~~~~~~P~~v~~l~~~~v~~ia~G~~h~~al~~~G~v~~wG~n 344 (389)
T 3kci_A 299 HGSDDHVRRPRQVQGLQGKKVIAIATGSLHCVCCTEDGEVYTWGDN 344 (389)
T ss_dssp SSSCCCEEEEEECGGGTTCCEEEEEECSSEEEEEETTCCEEEEECC
T ss_pred CCCCccccCCeEeccCCCCCEEEEEeccCeEEEECCCCCEEEeeCC
Confidence 11122221 234677887777777777899999999654
No 352
>1lw3_A Myotubularin-related protein 2; protein-phosphate complex, hydrolase; 2.30A {Homo sapiens} SCOP: b.55.1.8 c.45.1.3 PDB: 1m7r_A
Probab=89.07 E-value=2.5 Score=49.44 Aligned_cols=94 Identities=21% Similarity=0.299 Sum_probs=66.7
Q ss_pred ccceEEEE-EEEEEeee-eEeceEEEEecCeEEEEeCCCCCCceEEEEeccccceeeeccc----cCcceEEEEEEecCC
Q psy3053 155 YEKVILET-FGNKITPL-VVNPGRIVLSSTNLYFQPFNNIEPHKLLKVRLAGIKRIIRRRF----LLQQVGIEIYFKDLE 228 (917)
Q Consensus 155 ~~~~~~~~-~~~~~~~~-~~~~g~~~~~~~~~~f~~~~~~~~~~~~~~~~~~i~~~~~r~~----~~~~~~~e~~~~~~~ 228 (917)
.|.+..+. .+..+.|. ....|+|+||+-+|+|.+.... +...+.|++..|..|.+..- .-...+|+|.++|-
T Consensus 84 GE~v~~~~~~V~~~~p~~~~~~GtL~lTnyrLiF~~~~~~-~~~~~~IPL~~I~~Iekv~g~s~~g~~~~~l~I~CKDf- 161 (657)
T 1lw3_A 84 GENIKDMAKDVTYICPFTGAVRGTLTVTNYRLYFKSMERD-PPFVLDASLGVINRVEKIGGASSRGENSYGLETVCKDI- 161 (657)
T ss_dssp TCCEEEEEEEEEEEETTTEEEEEEEEEESSEEEEEESSSS-SCEEEEEEGGGEEEEEEECCTTCCSTTCSEEEEEETTT-
T ss_pred CeeEEEEeCCEEEecCCCCceeEEEEEECCEEEEEecCCC-cceEEEecccceEEEEecCCCcccCCCCceEEEEecCC-
Confidence 45555443 23345554 5688999999999999986432 34567889999999887421 11235899999997
Q ss_pred CceeEEEecCCh-hhHHHHHHHHhC
Q psy3053 229 PVKYLYLTLKTQ-GARDTLYNALLD 252 (917)
Q Consensus 229 ~~~~~~~~f~~~-~~~~~~~~~~~~ 252 (917)
+.+-|.|... .++..+++.|..
T Consensus 162 --R~~~f~f~~~~~~~~~v~~~L~~ 184 (657)
T 1lw3_A 162 --RNLRFAHKPEGRTRRSIFENLMK 184 (657)
T ss_dssp --EEEEEECCGGGCCHHHHHHHHHH
T ss_pred --cEEEEEeCCccchHHHHHHHHHH
Confidence 7888999865 347788888864
No 353
>1zsq_A Myotubularin-related protein 2; protein-phospholipid complex, hydrolase; HET: PIB; 1.82A {Homo sapiens} SCOP: b.55.1.8 c.45.1.3 PDB: 1zvr_A*
Probab=87.67 E-value=3.6 Score=47.12 Aligned_cols=94 Identities=21% Similarity=0.299 Sum_probs=65.2
Q ss_pred ccceEEEE-EEEEEeee-eEeceEEEEecCeEEEEeCCCCCCceEEEEeccccceeeeccc----cCcceEEEEEEecCC
Q psy3053 155 YEKVILET-FGNKITPL-VVNPGRIVLSSTNLYFQPFNNIEPHKLLKVRLAGIKRIIRRRF----LLQQVGIEIYFKDLE 228 (917)
Q Consensus 155 ~~~~~~~~-~~~~~~~~-~~~~g~~~~~~~~~~f~~~~~~~~~~~~~~~~~~i~~~~~r~~----~~~~~~~e~~~~~~~ 228 (917)
.|.+..+. .+..+.|. ....|+|.||+-+|+|.+.... +...+.|++..|..|.|..- .-...+|+|.++|-
T Consensus 12 GE~i~~~~~~V~~~~~~~~~~~GtL~lTn~rLiF~~~~~~-~~~~~~iPL~~I~~vek~~~~s~~~~~~~~l~I~CKDf- 89 (528)
T 1zsq_A 12 GENIKDMAKDVTYICPFTGAVRGTLTVTNYRLYFKSMERD-PPFVLDASLGVINRVEKIGGASSRGENSYGLETVCKDI- 89 (528)
T ss_dssp TCCEEEEEEEEEEEETTTEEEEEEEEEESSEEEEEESSSS-SCEEEEEEGGGEEEEEEECCTTCCSTTCSEEEEEETTT-
T ss_pred CCeEEEecCCEEEeCCCCCceeEEEEEECCEEEEEccCCC-ccEEEEeeccceEEEEEcCCCCcCCCCCceEEEEccCC-
Confidence 45554442 12233332 4578999999999999986532 34567899999988887421 11245899999997
Q ss_pred CceeEEEecCCh-hhHHHHHHHHhC
Q psy3053 229 PVKYLYLTLKTQ-GARDTLYNALLD 252 (917)
Q Consensus 229 ~~~~~~~~f~~~-~~~~~~~~~~~~ 252 (917)
+.+-|.|... .++.++++.|..
T Consensus 90 --r~~~f~f~~~~~~~~~v~~~L~~ 112 (528)
T 1zsq_A 90 --RNLRFAHKPEGRTRRSIFENLMK 112 (528)
T ss_dssp --EEEEEECCGGGCCHHHHHHHHHH
T ss_pred --eEEEEEecCchHHHHHHHHHHHH
Confidence 7888899865 347789888864
No 354
>1pfj_A TFIIH basal transcription factor complex P62 subunit; PH/PTB domain, structural proteomics in europe, spine, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.9 PDB: 2rnr_B
Probab=86.62 E-value=3.2 Score=36.75 Aligned_cols=73 Identities=12% Similarity=0.128 Sum_probs=52.1
Q ss_pred eceEEEEecCeEEEEeCCCCCCceEEEEeccccceeeeccccCcceEEEEEEecCCCceeEEEecCCh----hhHHHHHH
Q psy3053 173 NPGRIVLSSTNLYFQPFNNIEPHKLLKVRLAGIKRIIRRRFLLQQVGIEIYFKDLEPVKYLYLTLKTQ----GARDTLYN 248 (917)
Q Consensus 173 ~~g~~~~~~~~~~f~~~~~~~~~~~~~~~~~~i~~~~~r~~~~~~~~~e~~~~~~~~~~~~~~~f~~~----~~~~~~~~ 248 (917)
.+|.|.+++++|.+-|..+ ..+.+.+++.+|+...---=.=-.+-|.||..++ ..+-|.|.++ .+||.|=+
T Consensus 20 ~dGtL~l~~d~i~W~p~~~--~~~~vs~~~~~I~~qq~SP~~k~KVqLqi~l~~~---~~~~F~Ftn~~~a~~erd~VKd 94 (108)
T 1pfj_A 20 QDGALYLMAERIAWAPEGK--DRFTISHMYADIKCQKISPEGKAKIQLQLVLHAG---DTTNFHFSNESTAVKERDAVKD 94 (108)
T ss_dssp CBCEEEEETTEEEEECSSS--SSCSEEEETTTCCCEEECCSSSSSCEEEEECSSS---CEEEEECCCSSCTTHHHHHHHH
T ss_pred CCceEEEEcceEEEccCCC--CCceEEEehhhhhcceeCCCCCccEEEEEEEeCC---CceEEEEcCcHHHHHHHHHHHH
Confidence 4699999999999999554 4567788999998732222222335689999986 6778899986 46776644
Q ss_pred HH
Q psy3053 249 AL 250 (917)
Q Consensus 249 ~~ 250 (917)
.|
T Consensus 95 ~L 96 (108)
T 1pfj_A 95 LL 96 (108)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 355
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=85.91 E-value=56 Score=37.67 Aligned_cols=253 Identities=11% Similarity=0.038 Sum_probs=139.0
Q ss_pred EEEEEecccEEEEEEeccCeeeEEeccC-------------------------CCce--eEEEec---CCCCEEEEEE-C
Q psy3053 636 TMLVGCWDSCVVIYDVECGRIVTELAGH-------------------------EDAI--SCVAWD---EKRKRLISGS-W 684 (917)
Q Consensus 636 ~Lasgs~Dg~I~Iwdl~tg~~i~~l~~H-------------------------~~~V--t~l~~s---pd~~~L~Sgs-~ 684 (917)
.+.+|+..|.|+|+-+.+++.+..+.-. .+.. ..+++. .||++|+.-. .
T Consensus 72 ~f~SgG~sG~v~v~G~PSmR~l~~IpVF~~~~~~G~G~t~esk~il~~~~~~~~gD~HHp~~S~tdg~yDGrylfiNdka 151 (638)
T 3sbq_A 72 GFWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGLTNESRHIMGDSAKFLNGDCHHPHISMTDGKYDGKYLFINDKA 151 (638)
T ss_dssp EEEECGGGCCEEEEEETTTEEEEEECSSSCCTTTCTTTBHHHHHHHGGGGGCCCCCCCCCEEEEETTEEEEEEEEEEETT
T ss_pred EEeecCcCceEEEEecCCcceEEEeecccCCCCcccCCchhHHHHHhcCCCccCCCcCCCcccccCCeeeeEEEEEecCC
Confidence 4678889999999999999887766410 0111 123332 1567777765 3
Q ss_pred CCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEe--CCCCEEEEEEC-------CCeE------------EEEECC
Q psy3053 685 DCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAIS--KDNNQLAVGTE-------AGEL------------IIWSLE 743 (917)
Q Consensus 685 DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~s--pdg~~Lasgs~-------dG~I------------~iwDl~ 743 (917)
...|...++....+ ...........+.++.+- |+..++++++. ||.. ...|..
T Consensus 152 n~RvAri~l~~~~~------d~Ii~iPn~~~~Hg~~~~~~p~T~yv~~~~e~~~P~pndg~~~~~~~~~~y~~f~~iD~~ 225 (638)
T 3sbq_A 152 NSRVARIRLDIMKC------DKMITVPNVQAIHGLRLQKVPHTKYVFANAEFIIPHPNDGKVFDLQDENSYTMYNAIDAE 225 (638)
T ss_dssp TTEEEEEETTTTEE------EEEEECTTCSCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCTTSTTEEEEEEEEETT
T ss_pred CcceEEEECCcEee------ceeEeCCCCcCcccccccccCCccEEEecceeeccCCCCCcccccCChhhceEEEEEcCC
Confidence 45677777765411 111234455667777775 56677777664 2221 112333
Q ss_pred CCeeeEEecCCCCCCeEEEEEecCCCEEEEEeCCC----------------------------------------eEEEE
Q psy3053 744 NHLMTQQLSDDINASVNGVLFSEDGCRVLSCGNNC----------------------------------------MLNVY 783 (917)
Q Consensus 744 ~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~Dg----------------------------------------~I~iw 783 (917)
+.+...++. -.+....+...++|++.++.+.+. .+.+.
T Consensus 226 tm~v~~Qv~--v~gnld~~~~~~~g~~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~ie~~vk~G~~~~~~g~gv~Vi 303 (638)
T 3sbq_A 226 TMEMAFQVI--VDGNLDNTDADYTGRFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVEAAVKAGDFITLGDSKTPVL 303 (638)
T ss_dssp TCSEEEEEE--ESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHHHHHHHTTCCBCCTTCCCCEE
T ss_pred ccEEEEEEE--cCCChhhcCCCCCCCEEEEeeeccccCcChhhcCcccccEEEEecHHHHHHHHhcCCeEEECCCCeeEE
Confidence 333333322 122333455566777776665321 23344
Q ss_pred ECCC----C-eEEEEeecCCceEEEEEeCCCEEEEE--eCCCeEEEEECCCC------E-------EEEEEecCCCce-E
Q psy3053 784 DLTT----G-MQVCNKVFEEKLLCLSWAGEEKVILG--GALGMVYLVDLIQV------Q-------LLKQVRAHKDAV-L 842 (917)
Q Consensus 784 Dl~t----g-~~i~~~~~~~~i~~l~~s~~~~lv~g--s~dG~I~vwdl~~~------~-------~i~~l~~h~~~V-~ 842 (917)
|.+. + ..+..+..+.....+..+|+|..+++ -.+.++.++|.... + .....+...++. +
T Consensus 304 D~~~~~~~~~~~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~GlGPlHt 383 (638)
T 3sbq_A 304 DGRKKDGKDSKFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGLGPLHT 383 (638)
T ss_dssp ECSCBTTBCCSSEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCSCEEEE
T ss_pred ccccccccCCceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCCcccEE
Confidence 4433 1 12222333444556777888865544 44678999998742 1 133333222222 2
Q ss_pred EEeecCCEEEEEeCCCeEEEEECcCC----------eEEEEecCCCCCEEEEEE------cCCCCEEEEEe
Q psy3053 843 SLHFDNCTMLVGCWDSCVVIYDVECG----------RIVTELAGHEDAISCVAW------DEKRKRLISGN 897 (917)
Q Consensus 843 sis~dg~~Lasgs~DG~I~Iwdl~tg----------~~l~~l~~h~~~V~slaf------Spdg~~LaSgs 897 (917)
....+|....+---|..|.-|++... ..+..+.-|-.+- .+.- .|||++|++..
T Consensus 384 ~Fd~~G~aYTtlfidSqvvkWni~~a~~~~~g~~~~~v~~k~dv~YqpG-H~~~~~get~~~dGk~lv~ln 453 (638)
T 3sbq_A 384 TFDGRGNAYTTLFIDSQVVKWNMEEAVRAYKGEKVNYIKQKLDVHYQPG-HLHASLCETNEADGKWLVALS 453 (638)
T ss_dssp EECSSSEEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEE-EEEETTTTSTTCCSCEEEEEE
T ss_pred EECCCCceEeeeeecceEEEEeccHHHHHhcCccCCeeeeccccccCCc-ccccCCCccCCCCccEEEEec
Confidence 33456644444557999999998653 4566666664432 2222 57899999875
No 356
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=84.80 E-value=43 Score=35.41 Aligned_cols=193 Identities=11% Similarity=0.111 Sum_probs=106.5
Q ss_pred CCcEEEEEecCCceEEEeccCCceee-------eeec-cccceEEEEEeCCCCEEEEEecccEEEEEEecc---------
Q psy3053 591 EGISVASVGRDAMLKIHSLKTGRQER-------SAVL-SSMTLSSLCILPDNCTMLVGCWDSCVVIYDVEC--------- 653 (917)
Q Consensus 591 dg~~Lasgs~Dg~I~IWd~~t~~~~~-------~~~~-~~~~V~sl~~spd~~~Lasgs~Dg~I~Iwdl~t--------- 653 (917)
+...+++.+.+|.|+--.+.+-+..+ .+.. ....+..+........|+..+..|.++-.....
T Consensus 2 ~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~~ke~D~l~~~~~~~~~~~ll~fT~~G~~~~~~~~elp~~~~~a~ 81 (307)
T 1zi0_A 2 QEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATRGAR 81 (307)
T ss_dssp CCEEEEEEETTSEEEEEECC--------------------CCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCCCCSSSC
T ss_pred CCcEEEEEeCCCEEEEeeHHHhhhhccCCCCceeeeeCCCCEEEEEEEECCCCEEEEEECCCEEEEEEhhHCcCCCCCCC
Confidence 44567888889988766654422211 1111 223344444455566777777888766665432
Q ss_pred CeeeE---EeccCCCceeEEEec---CCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCE
Q psy3053 654 GRIVT---ELAGHEDAISCVAWD---EKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQ 727 (917)
Q Consensus 654 g~~i~---~l~~H~~~Vt~l~~s---pd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~ 727 (917)
|..+. .+. ..+.|.++... .++.+++.++.+|.++--.+..-............... .+.+..+....+...
T Consensus 82 G~~i~~~l~l~-~~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~r~G~~~i~l~~-~d~lv~~~~~~~~~~ 159 (307)
T 1zi0_A 82 GRPIVNLLPLE-QDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVD-GDELIGVDLTSGEDE 159 (307)
T ss_dssp CEEGGGTSCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGTTCCTTCEESSCCCT-TCCEEEEEEECTTCE
T ss_pred CeEhhhccCCC-CCCEEEEEEEeccCCCCcEEEEEeCCCeEEEEEHHHhhccccCCeEEEEECC-CCEEEEEEEeCCCCE
Confidence 22211 122 23445555432 34568999999999999976432111111111111222 356666666556677
Q ss_pred EEEEECCCeEEEEECCCCe-------eeEEecCCCCCCeEEEEEecCCCEEEEEeCCCeEEEEEC
Q psy3053 728 LAVGTEAGELIIWSLENHL-------MTQQLSDDINASVNGVLFSEDGCRVLSCGNNCMLNVYDL 785 (917)
Q Consensus 728 Lasgs~dG~I~iwDl~~~~-------~~~~l~~~h~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl 785 (917)
++..+.+|.+..++...-. -+..+.-.....|.++...+++..+++.+..|..+-.++
T Consensus 160 i~l~T~~G~~irf~~~~v~~~gr~a~Gv~~i~L~~~d~Vv~~~~~~~~~~ll~~T~~G~~Kr~~~ 224 (307)
T 1zi0_A 160 VMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLGEGDKVVSLIVPRGDGAILTATQNGYGKRTAV 224 (307)
T ss_dssp EEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCTTCCEEEEECCCSSCEEEEEETTSEEEEECG
T ss_pred EEEECCCCcEEEEEHHHcCccCCCCCCeEeEEeCCCCEEEEEEEecCCCEEEEEEcCCceEEEEH
Confidence 8888999998888764311 112222123456766665555667888888888887766
No 357
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=84.68 E-value=57 Score=36.71 Aligned_cols=112 Identities=11% Similarity=0.081 Sum_probs=62.9
Q ss_pred CceeEEEecCCCC-EEEEEECCCeEEEEeCCCCCCCccCCcceeeec------cCCCceEEEEEeCC----CCEEEEEEC
Q psy3053 665 DAISCVAWDEKRK-RLISGSWDCTVRVWNTGASWSHMKPSKSLVSQL------DLDNRIKCLAISKD----NNQLAVGTE 733 (917)
Q Consensus 665 ~~Vt~l~~spd~~-~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~------~h~~~V~~l~~spd----g~~Lasgs~ 733 (917)
..-+.|+|.|++. .|+.+...|.|++++...... ......+.... ........|+++|+ +.+.++-+.
T Consensus 14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~-~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~ 92 (463)
T 2wg3_C 14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIF-KEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTT 92 (463)
T ss_dssp SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBC-SSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEE
T ss_pred CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCee-eeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeC
Confidence 3567899999986 566667899999997543210 00000000001 12456789999996 444444332
Q ss_pred C------------CeEEEEECCC----------CeeeEEec-CCCCCCeEEEEEecCCCEEEEEeCC
Q psy3053 734 A------------GELIIWSLEN----------HLMTQQLS-DDINASVNGVLFSEDGCRVLSCGNN 777 (917)
Q Consensus 734 d------------G~I~iwDl~~----------~~~~~~l~-~~h~~~V~~v~fspdg~~L~s~s~D 777 (917)
+ ..|.-|.+.. .+.+..+. .........|+|.|||.+.++.+..
T Consensus 93 ~~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd~ 159 (463)
T 2wg3_C 93 NQERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGDG 159 (463)
T ss_dssp CCCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECCT
T ss_pred CCCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCCC
Confidence 1 1454565542 12233322 1223456789999999887777654
No 358
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=83.17 E-value=53 Score=35.13 Aligned_cols=163 Identities=13% Similarity=0.085 Sum_probs=96.8
Q ss_pred cceEEEEEeC---CCcEEEEEecCCceEEEeccCCceee-----eeec-cccceEEEEEeCCCCEEEEEecccEEEEEEe
Q psy3053 581 EAITAVAICG---EGISVASVGRDAMLKIHSLKTGRQER-----SAVL-SSMTLSSLCILPDNCTMLVGCWDSCVVIYDV 651 (917)
Q Consensus 581 ~~Vtsv~fSp---dg~~Lasgs~Dg~I~IWd~~t~~~~~-----~~~~-~~~~V~sl~~spd~~~Lasgs~Dg~I~Iwdl 651 (917)
..|.++..-+ +...++.++.+|.++--.+..-...+ .+.. ....+..+........++..+..|.+..+..
T Consensus 95 e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lke~D~lv~~~~~~~~d~ill~T~~G~~~rf~~ 174 (327)
T 3uc1_A 95 ERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLRDNDELVGAVLCSAGDDLLLVSANGQSIRFSA 174 (327)
T ss_dssp CCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGGGCCCCSSCEESCBCCTTCCEEEEEEECTTCEEEEEETTSEEEEEEC
T ss_pred CEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHHhhccccCceEEEEECCCCEEEEEEEecCCCEEEEEECCCeEEEEEC
Confidence 4455544333 46789999999999988876532211 1111 2344555555556677888889999888877
Q ss_pred c--c----C-----eeeEEeccCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCccee--eeccCCCceEE
Q psy3053 652 E--C----G-----RIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLV--SQLDLDNRIKC 718 (917)
Q Consensus 652 ~--t----g-----~~i~~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~--~~~~h~~~V~~ 718 (917)
. . + .....+. ..+.|.++...+++..++.++..|.++.-.+..-....+...... ......+.+..
T Consensus 175 ~~~eip~~gr~a~Gv~~i~L~-~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G~~~~~l~~~~d~lv~ 253 (327)
T 3uc1_A 175 TDEALRPMGRATSGVQGMRFN-IDDRLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYDRRRGRLVG 253 (327)
T ss_dssp CTTTSCCCCTTSBCEESSCCC-TTCCEEEEEECCTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCEESSCCCTTTCSEEE
T ss_pred cccccCcCCcCCCCeeeecCC-CCCEEEEEEEECCCCEEEEEeCCCcEEEEEHHHccccCcCCCcEEEEEecCCCCeEEE
Confidence 6 2 1 1111222 245566666666667899999999999887654321111111111 11121344555
Q ss_pred EEEeCCCCEEEEEECCCeEEEEECCC
Q psy3053 719 LAISKDNNQLAVGTEAGELIIWSLEN 744 (917)
Q Consensus 719 l~~spdg~~Lasgs~dG~I~iwDl~~ 744 (917)
+....+...++..+.+|.+.-++...
T Consensus 254 ~~~~~~~~~i~l~T~~G~~ir~~~~~ 279 (327)
T 3uc1_A 254 ALIVDDDSELYAVTSGGGVIRTAARQ 279 (327)
T ss_dssp EEEECTTCEEEEEEGGGCEEEEEGGG
T ss_pred EEEeCCCccEEEEcCCCeEEEEehhh
Confidence 55555556777788888888887653
No 359
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=82.40 E-value=50 Score=34.33 Aligned_cols=161 Identities=11% Similarity=-0.002 Sum_probs=94.4
Q ss_pred cceEEEEEeCCCcEEEEEecCCceEE---EeccCCceeeeeeccccceEEEEEeC--CCCEEEEEecccEEEEEEeccC-
Q psy3053 581 EAITAVAICGEGISVASVGRDAMLKI---HSLKTGRQERSAVLSSMTLSSLCILP--DNCTMLVGCWDSCVVIYDVECG- 654 (917)
Q Consensus 581 ~~Vtsv~fSpdg~~Lasgs~Dg~I~I---Wd~~t~~~~~~~~~~~~~V~sl~~sp--d~~~Lasgs~Dg~I~Iwdl~tg- 654 (917)
+.+.++........|+..+.+|.+.- |++..+.... +...+..|.++.. + ++..++..+.+|.++-..+..-
T Consensus 24 D~~~~~~~~~t~~~ll~fT~~G~v~~~~~~~lp~~~~~~-ll~~~e~i~~v~~-~~~~~~~~v~~T~~G~iKr~~l~~~~ 101 (276)
T 3no0_A 24 APVVNILRVPFTEGLFLVSNRGRVYWIAGSQALQGSKVS-LKSREEKIVGAFI-REKFGNRLLLATKKGYVKKIPLAEFE 101 (276)
T ss_dssp CCEEEEEEEETTSCEEEEETTSEEEEECSHHHHTSEECC-CSSTTCCEEEEEE-GGGSCSEEEEEETTSEEEEEEGGGTT
T ss_pred CeEEEEEEECCCCEEEEEcCCCeEEEEEhhhCccCcccc-cCCCCCEEEEEEC-CcCCCCEEEEEeCCCEEEEEEHHHhh
Confidence 45555555555556666667776543 3433322111 2223445655544 4 4678999999999999987652
Q ss_pred -----eeeEEeccCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccC-CcceeeeccCCCceEEEEEeCCCCEE
Q psy3053 655 -----RIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKP-SKSLVSQLDLDNRIKCLAISKDNNQL 728 (917)
Q Consensus 655 -----~~i~~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~-~~~~~~~~~h~~~V~~l~~spdg~~L 728 (917)
.....+.. .+.+..+........++..+..|.+..+....-....+. ..........+..|..+...+++..+
T Consensus 102 ~~~~G~~~i~lke-gD~l~~~~~~~~~~~ill~T~~G~~~r~~~~eip~~gR~a~Gv~~i~L~~~d~vv~~~~~~~~~~l 180 (276)
T 3no0_A 102 YKAQGMPIIKLTE-GDEVVSIASSVDETHILLFTKKGRVARFSVREVPPSTPGARGVQGIKLEKNDETSGLRIWNGEPYL 180 (276)
T ss_dssp TCSTTEECSCCCT-TCCEEEEEECCSSCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCTTCCEEEEEEESSCSEE
T ss_pred hhcCCeEEEecCC-CCEEEEEEEeCCCCEEEEEECCCEEEEEEhhhCCCcCCCCCCEEEEccCCCCEEEEEEEeCCCCEE
Confidence 22222332 345555555556668888899999888875432111110 00111122345667777666667788
Q ss_pred EEEECCCeEEEEECCC
Q psy3053 729 AVGTEAGELIIWSLEN 744 (917)
Q Consensus 729 asgs~dG~I~iwDl~~ 744 (917)
+..+..|.++...+..
T Consensus 181 l~~T~~G~~kr~~~~e 196 (276)
T 3no0_A 181 LVITAKGRVKKISHEE 196 (276)
T ss_dssp EEEETTSCEEEEEGGG
T ss_pred EEEeCCCcEEEeEHHH
Confidence 8999999998887643
No 360
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=81.59 E-value=66 Score=35.18 Aligned_cols=171 Identities=10% Similarity=0.074 Sum_probs=96.5
Q ss_pred ceEEEeccCC--ceeeeeecc------ccceEEEEEe---CC----CCEEEEE-ecccEEEEEEeccCeeeEEec-----
Q psy3053 603 MLKIHSLKTG--RQERSAVLS------SMTLSSLCIL---PD----NCTMLVG-CWDSCVVIYDVECGRIVTELA----- 661 (917)
Q Consensus 603 ~I~IWd~~t~--~~~~~~~~~------~~~V~sl~~s---pd----~~~Lasg-s~Dg~I~Iwdl~tg~~i~~l~----- 661 (917)
.|.+||+.++ +.++++... ...+..+++. |+ +.++..+ +..+.|.|+|+.+++.-+.+.
T Consensus 124 kLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~p 203 (381)
T 3q6k_A 124 AIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFKA 203 (381)
T ss_dssp EEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGSC
T ss_pred eEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCcc
Confidence 4778999998 888776653 3346777777 22 3343333 347789999999887655442
Q ss_pred ---------cC----CCceeEEEecCC----CCEEEEEECCCeEEEEeCCCCCC---CccCCcceeeeccCCCceEEEEE
Q psy3053 662 ---------GH----EDAISCVAWDEK----RKRLISGSWDCTVRVWNTGASWS---HMKPSKSLVSQLDLDNRIKCLAI 721 (917)
Q Consensus 662 ---------~H----~~~Vt~l~~spd----~~~L~Sgs~DgtI~vWdl~~~~~---~~~~~~~~~~~~~h~~~V~~l~~ 721 (917)
|. ...|..|+.+|+ ++.|.-....+. ++|.+.+... ............+....-..++.
T Consensus 204 d~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss~-~ly~V~T~~L~~~~~~~~v~~~G~kg~~s~~~~~~~ 282 (381)
T 3q6k_A 204 ERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSAI-KVYSVNTKELKQKGGKLNPELLGNRGKYNDAIALAY 282 (381)
T ss_dssp CSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSCS-EEEEEEHHHHSSTTCCCCCEEEEECCTTCCEEEEEE
T ss_pred ccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCCC-cEEEEEHHHhhCcchhhceEEeeecCCCCCcceEEE
Confidence 11 246788888887 677776655442 3444332110 00111111111111233445667
Q ss_pred e-CCCCEEEEEECCCeEEEEECCC-C----eeeEEecCCCCCCeEEEEEecCCCEEEEE
Q psy3053 722 S-KDNNQLAVGTEAGELIIWSLEN-H----LMTQQLSDDINASVNGVLFSEDGCRVLSC 774 (917)
Q Consensus 722 s-pdg~~Lasgs~dG~I~iwDl~~-~----~~~~~l~~~h~~~V~~v~fspdg~~L~s~ 774 (917)
+ .+|.++++--....|..|+..+ . ..........-..+..+.+.++|.+.+.+
T Consensus 283 D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~n~~~l~~d~~l~~pd~~~i~~~g~Lwv~s 341 (381)
T 3q6k_A 283 DPKTKVIFFAEANTKQVSCWNTQKMPLRMKNTDVVYTSSRFVFGTDISVDSKGGLWFMS 341 (381)
T ss_dssp CTTTCEEEEEESSSSEEEEEETTSCSBCGGGEEEEEECTTCCSEEEEEECTTSCEEEEE
T ss_pred eCCCCeEEEEeccCCeEEEEeCCCCccccCceEEEEECCCccccCeEEECCCCeEEEEE
Confidence 5 5677777777788899999876 1 11222221223356677776666544444
No 361
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=80.43 E-value=58 Score=33.81 Aligned_cols=161 Identities=13% Similarity=0.052 Sum_probs=93.3
Q ss_pred cceEEEEEeCCCCEEEEEecccEEEEE---EeccCeeeEEeccCCCceeEEEecC-CCCEEEEEECCCeEEEEeCCCCCC
Q psy3053 623 MTLSSLCILPDNCTMLVGCWDSCVVIY---DVECGRIVTELAGHEDAISCVAWDE-KRKRLISGSWDCTVRVWNTGASWS 698 (917)
Q Consensus 623 ~~V~sl~~spd~~~Lasgs~Dg~I~Iw---dl~tg~~i~~l~~H~~~Vt~l~~sp-d~~~L~Sgs~DgtI~vWdl~~~~~ 698 (917)
..+..+........|+.-+.+|.++-- ++..++....+. ....|.++.... +...++.++.+|.++-..+..-.
T Consensus 24 D~~~~~~~~~t~~~ll~fT~~G~v~~~~~~~lp~~~~~~ll~-~~e~i~~v~~~~~~~~~~v~~T~~G~iKr~~l~~~~- 101 (276)
T 3no0_A 24 APVVNILRVPFTEGLFLVSNRGRVYWIAGSQALQGSKVSLKS-REEKIVGAFIREKFGNRLLLATKKGYVKKIPLAEFE- 101 (276)
T ss_dssp CCEEEEEEEETTSCEEEEETTSEEEEECSHHHHTSEECCCSS-TTCCEEEEEEGGGSCSEEEEEETTSEEEEEEGGGTT-
T ss_pred CeEEEEEEECCCCEEEEEcCCCeEEEEEhhhCccCcccccCC-CCCEEEEEECCcCCCCEEEEEeCCCEEEEEEHHHhh-
Confidence 344454444445566666667765543 333222111132 344565554422 46799999999999999875432
Q ss_pred CccCCcceeeeccCCCceEEEEEeCCCCEEEEEECCCeEEEEECCCC-------eeeEEecCCCCCCeEEEEEecCCCEE
Q psy3053 699 HMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGELIIWSLENH-------LMTQQLSDDINASVNGVLFSEDGCRV 771 (917)
Q Consensus 699 ~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~dG~I~iwDl~~~-------~~~~~l~~~h~~~V~~v~fspdg~~L 771 (917)
... ..........++.+..+........++..+..|.+..+....- .-+..+.-.....|.++...+++..+
T Consensus 102 ~~~-~G~~~i~lkegD~l~~~~~~~~~~~ill~T~~G~~~r~~~~eip~~gR~a~Gv~~i~L~~~d~vv~~~~~~~~~~l 180 (276)
T 3no0_A 102 YKA-QGMPIIKLTEGDEVVSIASSVDETHILLFTKKGRVARFSVREVPPSTPGARGVQGIKLEKNDETSGLRIWNGEPYL 180 (276)
T ss_dssp TCS-TTEECSCCCTTCCEEEEEECCSSCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCTTCCEEEEEEESSCSEE
T ss_pred hhc-CCeEEEecCCCCEEEEEEEeCCCCEEEEEECCCEEEEEEhhhCCCcCCCCCCEEEEccCCCCEEEEEEEeCCCCEE
Confidence 111 1111112234556666666666678888999999988875321 11111221234567776666667788
Q ss_pred EEEeCCCeEEEEECC
Q psy3053 772 LSCGNNCMLNVYDLT 786 (917)
Q Consensus 772 ~s~s~Dg~I~iwDl~ 786 (917)
+..+..|.++...+.
T Consensus 181 l~~T~~G~~kr~~~~ 195 (276)
T 3no0_A 181 LVITAKGRVKKISHE 195 (276)
T ss_dssp EEEETTSCEEEEEGG
T ss_pred EEEeCCCcEEEeEHH
Confidence 888889888887753
No 362
>2yf0_A Myotubularin-related protein 6; hydrolase; 2.65A {Homo sapiens}
Probab=80.02 E-value=5.3 Score=45.55 Aligned_cols=76 Identities=17% Similarity=0.206 Sum_probs=57.8
Q ss_pred eeEeceEEEEecCeEEEEeCCCCCCceEEEEeccccceeeeccccCcceEEEEEEecCCCceeEEEecCChhhHHHHHHH
Q psy3053 170 LVVNPGRIVLSSTNLYFQPFNNIEPHKLLKVRLAGIKRIIRRRFLLQQVGIEIYFKDLEPVKYLYLTLKTQGARDTLYNA 249 (917)
Q Consensus 170 ~~~~~g~~~~~~~~~~f~~~~~~~~~~~~~~~~~~i~~~~~r~~~~~~~~~e~~~~~~~~~~~~~~~f~~~~~~~~~~~~ 249 (917)
.....|+|.||+-+|+|.+.. ..-.-+++..|..|-|+.-.-+...|+|.++|- +.+=|.|....++.++++.
T Consensus 22 ~~~~~GtL~lTn~~LiF~~~~----~~e~wi~~~~I~~VeK~~~~~~~~~l~I~CKDf---r~~~f~f~~~~~~~~v~~s 94 (512)
T 2yf0_A 22 NKSLTGTLYLTATHLLFIDSH----QKETWILHHHIASVEKLALTTSGCPLVIQCKNF---RTVHFIVPRERDCHDIYNS 94 (512)
T ss_dssp --CCEEEEEECSSEEEEEESS----SCEEEEEGGGEEEEEECCCBTTBEEEEEEETTS---CEEEEEESCHHHHHHHHHH
T ss_pred CCceeEEEEEECCEEEEeCCC----CCceEecccceeEEEEecCCCCCceEEEEecCC---cEEEEEeCChHHHHHHHHH
Confidence 345789999999999999832 223457888888887764333446799999997 7788899988888889988
Q ss_pred HhC
Q psy3053 250 LLD 252 (917)
Q Consensus 250 ~~~ 252 (917)
|..
T Consensus 95 L~~ 97 (512)
T 2yf0_A 95 LLQ 97 (512)
T ss_dssp HHH
T ss_pred HHh
Confidence 864
No 363
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=79.59 E-value=1.1e+02 Score=36.47 Aligned_cols=228 Identities=10% Similarity=0.020 Sum_probs=116.5
Q ss_pred EeCCCCEEEEE-----ecccEEEEEEeccCeeeEE-ec-cCCC------ceeEEEecCCCCEEEEE----------ECCC
Q psy3053 630 ILPDNCTMLVG-----CWDSCVVIYDVECGRIVTE-LA-GHED------AISCVAWDEKRKRLISG----------SWDC 686 (917)
Q Consensus 630 ~spd~~~Lasg-----s~Dg~I~Iwdl~tg~~i~~-l~-~H~~------~Vt~l~~spd~~~L~Sg----------s~Dg 686 (917)
++|++++++.+ +.-..++++|+.+++.+.. +. .-.. ....++|..++..+++. +...
T Consensus 137 ~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~~~~~~~k~~~~~~~~~~~~~W~d~~~~~~~~~~~~~~~~~~~~~~ 216 (711)
T 4hvt_A 137 CFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKNGFEPITNSGKLLEGKFTYPTWINKDTIIFNLVLHKNEITSSLYPN 216 (711)
T ss_dssp CSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTTCSCCBCTTCCBCCEETCCEEEEETTEEEECCCCSTTCBCTTSSBC
T ss_pred cCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCCCcccccccccccccccceeeEECCCEEEEEeCCCCCCcCcCCCCC
Confidence 78888877764 2334799999999987631 11 0000 11344776443344431 1124
Q ss_pred eEEEEeCCCCCCCccCCcceeeeccCCCc-eEEEEEeCCCC-----EEEEEECC---CeEEEEECCC--CeeeEEecCCC
Q psy3053 687 TVRVWNTGASWSHMKPSKSLVSQLDLDNR-IKCLAISKDNN-----QLAVGTEA---GELIIWSLEN--HLMTQQLSDDI 755 (917)
Q Consensus 687 tI~vWdl~~~~~~~~~~~~~~~~~~h~~~-V~~l~~spdg~-----~Lasgs~d---G~I~iwDl~~--~~~~~~l~~~h 755 (917)
.|+.|.+.+... .......+.... -.+...+++++ .+++.+.+ ..+.+.|... ++. ..+..+.
T Consensus 217 ~v~~~~~Gt~~~-----~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~ 290 (711)
T 4hvt_A 217 SLYIWKRGESIE-----KAKKLFEVPKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKYKNLKL-QKINMPS 290 (711)
T ss_dssp EEEEEETTSCGG-----GCEEEEECCTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSSSSCEE-EECCSCT
T ss_pred EEEEEECCCChH-----HCeEEeccCCCceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCCCCCcc-eEeecCC
Confidence 688888766411 111111122222 23455566665 24443322 4566667653 332 2332122
Q ss_pred CCCeEEEEEecCCCEEEEE----------eCCCeEEEEECCCCe----------EEEEeecCCceEEEEEeCCCEEEEEe
Q psy3053 756 NASVNGVLFSEDGCRVLSC----------GNNCMLNVYDLTTGM----------QVCNKVFEEKLLCLSWAGEEKVILGG 815 (917)
Q Consensus 756 ~~~V~~v~fspdg~~L~s~----------s~Dg~I~iwDl~tg~----------~i~~~~~~~~i~~l~~s~~~~lv~gs 815 (917)
.. .+..+.++.+++.. ...+.|...|+.++. .+........+..+.+.++..+++..
T Consensus 291 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~ 367 (711)
T 4hvt_A 291 DA---TLQGSFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTANEVFNFISTTKDRVFLATY 367 (711)
T ss_dssp TC---EEEEEETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCTTEEEEEEEECSSCEEEEEE
T ss_pred cc---eEeeeECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCCCCCeEEEEEEECCEEEEEEE
Confidence 21 12344566555532 245678888876531 11222233457788888887777777
Q ss_pred CCC--eEEEEECCCCE-EEEE-EecC-CCceEEE--eecCC-EEEEEeC---CCeEEEEECc
Q psy3053 816 ALG--MVYLVDLIQVQ-LLKQ-VRAH-KDAVLSL--HFDNC-TMLVGCW---DSCVVIYDVE 866 (917)
Q Consensus 816 ~dG--~I~vwdl~~~~-~i~~-l~~h-~~~V~si--s~dg~-~Lasgs~---DG~I~Iwdl~ 866 (917)
.+| .+.++++.+++ .... +... .+.+... ++++. ++++.+. -+.+..+|+.
T Consensus 368 ~~~~~~l~~~~~~~g~~~~~~~i~lp~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~ 429 (711)
T 4hvt_A 368 DNVVAKVVTFTLENEQWTKPVVLKLPYQNAIFGMSSYEEEEEALITIENSIVPPTIYLWVKT 429 (711)
T ss_dssp ETTEEEEEEECEETTEECCCEEECCCSTTCEEEEECCTTCSCEEEEEECSSSCCEEEEECTT
T ss_pred ECCEEEEEEEECCCCceEEEeccCCCCCeEEEEEeecCcCCEEEEEEecCCCCCEEEEEeCC
Confidence 776 46777776664 2223 2211 2344433 34544 4444433 3678888876
No 364
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=78.65 E-value=80 Score=34.33 Aligned_cols=236 Identities=9% Similarity=0.001 Sum_probs=130.1
Q ss_pred eeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCc----cCCcceee-eccCCCceEEEEEeCCCCEEEEEECCCeEEEEE
Q psy3053 667 ISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHM----KPSKSLVS-QLDLDNRIKCLAISKDNNQLAVGTEAGELIIWS 741 (917)
Q Consensus 667 Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~----~~~~~~~~-~~~h~~~V~~l~~spdg~~Lasgs~dG~I~iwD 741 (917)
|..++.. ....+....||.|..|-.......- ........ .......+..++++....+.++-+.+|.|+.|-
T Consensus 55 i~~i~~G--~~~~~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~~~~v~i~~G~~h~~al~~~G~v~~wG 132 (389)
T 3kci_A 55 PVQLIGG--EQTLFAVTADGKLYATGYGAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWG 132 (389)
T ss_dssp EEEEEEE--TTEEEEEETTSCEEEEECCGGGTTSSSSSCCEEEEEECGGGTTSCEEEEEECTTCSEEEEEETTSCEEEEE
T ss_pred eEEEEeC--CCeEEEEcCCCcEEEEECCCCCCCCCCCcCCccCCEEcccccCCceeEEEECcCCCeEEEEcCCCCEEEEe
Confidence 4444433 3556666789999999754321100 00000011 111233456677777777788888999999996
Q ss_pred CCCC-----------eeeEEecCCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCC-C--------eEEE--Eee--cC
Q psy3053 742 LENH-----------LMTQQLSDDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTT-G--------MQVC--NKV--FE 797 (917)
Q Consensus 742 l~~~-----------~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~t-g--------~~i~--~~~--~~ 797 (917)
.... .....+.......|..++.. ..+.++...+|.|+.|-... + .... ... ..
T Consensus 133 ~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~va~G--~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~ 210 (389)
T 3kci_A 133 EAEDGKLGHGNRSPCDRPRVIESLRGIEVVDVAAG--GAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEALQG 210 (389)
T ss_dssp CCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEEC--SSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTT
T ss_pred CCCCCcCCCCCCccCcCCeEecccCCCeEEEEEeC--cCeEEEEeCCCeEEEeCCCCCCCcCCCCCcccccceEecccCC
Confidence 4321 11222221122356555543 44666667899999996432 1 1111 111 12
Q ss_pred CceEEEEEeC-CCEEEEEeCCCeEEEEECCCC-----------EEEEEEec-CCCceEEEeecCCEEEEEeCCCeEEEEE
Q psy3053 798 EKLLCLSWAG-EEKVILGGALGMVYLVDLIQV-----------QLLKQVRA-HKDAVLSLHFDNCTMLVGCWDSCVVIYD 864 (917)
Q Consensus 798 ~~i~~l~~s~-~~~lv~gs~dG~I~vwdl~~~-----------~~i~~l~~-h~~~V~sis~dg~~Lasgs~DG~I~Iwd 864 (917)
..+..++... +...++-..+|.|+.|-.... .....+.. ....|..++......++-..||.|+.|-
T Consensus 211 ~~v~~ia~G~g~~~t~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~v~~G~~hs~alt~~G~v~~wG 290 (389)
T 3kci_A 211 HRVVDIACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSLTGLGVVKVECGSQFSVALTKSGAVYTWG 290 (389)
T ss_dssp SCEEEEEECCSSCEEEEEETTTEEEEEECCGGGTTSSSSCCCEEEEEECGGGTTSCEEEEEEETTEEEEEETTSCEEEEE
T ss_pred CeEEEEEEcCCCcEEEEEccCCEEEEEeCCCCCCCCCCCCCCccccEEecccCCCcEEEEeCCCCEEEEEeCCCeEEEEe
Confidence 3466666543 447777889999999965321 11122222 2335777777777777778999999996
Q ss_pred CcCC----------e-EEEEecC-CCCCEEEEEEcCCCCEEEEEeCCCcEEEEecC
Q psy3053 865 VECG----------R-IVTELAG-HEDAISCVAWDEKRKRLISGNLVGAPKLYATE 908 (917)
Q Consensus 865 l~tg----------~-~l~~l~~-h~~~V~slafSpdg~~LaSgs~DG~V~IWdl~ 908 (917)
.... . ....+.. ....|..++... ...+....||.|..|-.+
T Consensus 291 ~n~~GqLG~g~~~~~~~P~~v~~l~~~~v~~ia~G~--~h~~al~~~G~v~~wG~n 344 (389)
T 3kci_A 291 KGDYHRLGHGSDDHVRRPRQVQGLQGKKVIAIATGS--LHCVCCTEDGEVYTWGDN 344 (389)
T ss_dssp CCGGGTTCSSSCCCEEEEEECGGGTTCCEEEEEECS--SEEEEEETTCCEEEEECC
T ss_pred CCCCCCCCCCCCccccCCeEeccCCCCCEEEEEecc--CeEEEECCCCCEEEeeCC
Confidence 5310 1 1112221 123566666543 345556789999999765
No 365
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=75.56 E-value=88 Score=33.26 Aligned_cols=235 Identities=9% Similarity=0.052 Sum_probs=128.2
Q ss_pred CCCcEEEEEecCCceEEEeccCCc----eeeeeeccccceEEEEEeCCCCEEEEEecccEEEEEEecc---------Cee
Q psy3053 590 GEGISVASVGRDAMLKIHSLKTGR----QERSAVLSSMTLSSLCILPDNCTMLVGCWDSCVVIYDVEC---------GRI 656 (917)
Q Consensus 590 pdg~~Lasgs~Dg~I~IWd~~t~~----~~~~~~~~~~~V~sl~~spd~~~Lasgs~Dg~I~Iwdl~t---------g~~ 656 (917)
|+...+++.+.+|.|+--.+.+-+ ....+. ....+..+........|+..+..|.++-..... |..
T Consensus 3 ~~e~~~v~lT~~G~IKr~~~~~~~~~~~~~~~lk-e~D~l~~~~~~~t~d~ll~fT~~Gr~~~~~~~elp~~~r~a~G~~ 81 (323)
T 1wp5_A 3 ASEDVIVTVTKDGYVKRTSLRSYAASNGQDFAMK-DTDRLLAMLEMNTKDVLLLFTNKGNYLYCPVHELPDIRWKDLGQH 81 (323)
T ss_dssp SCCEEEEEEETTCEEEEEEHHHHHHTTTCCCCCC-TTCCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCTTSCCEE
T ss_pred cCCcEEEEEeCCCEEEEeEHHHhhhcCccccccC-CCCEEEEEEEECCCCEEEEEECCCEEEEEEHHHCcCCCCCCCCcC
Confidence 456678888999999876554211 111122 223444555555566777778888876665432 221
Q ss_pred eEE---eccCCCceeEE-EecC--CCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEE
Q psy3053 657 VTE---LAGHEDAISCV-AWDE--KRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAV 730 (917)
Q Consensus 657 i~~---l~~H~~~Vt~l-~~sp--d~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Las 730 (917)
+.. +. ....|.++ ...+ ++.+++.++.+|.++-..+..-.................+.+..+........++.
T Consensus 82 i~~~i~L~-~~e~Iv~~~~~~~~~~~~~ll~~T~~G~iKrt~l~e~~~~~r~~G~~ai~l~e~d~lv~~~~~~~~~~i~l 160 (323)
T 1wp5_A 82 IANIIPID-RDEEIIKAIPINDFELNGYFLFVTRNGMVKKTELKHYKAQRYSKPLTGINLKNDDQVVDVHLTDGMNELFL 160 (323)
T ss_dssp GGGTSCCC-TTCCEEEEEEESCTTSSCEEEEEETTSEEEEEEGGGGCCSCCSSCEECSCCCTTCCEEEEEEECSCSEEEE
T ss_pred hhhccCCC-CCCEEEEEEEecccCCCceEEEEeCCCeEEEeEHHHhhhccccCceEEEEeCCCCEEEEEEEeCCCCEEEE
Confidence 111 11 22345554 3332 25689999999999999875332111000111111223356666666556677888
Q ss_pred EECCCeEEEEECCCC-------eeeEEecCCCCCCeEEEEEecCCC-EEEEEeCCCeEEEEECCC-------CeEEEEee
Q psy3053 731 GTEAGELIIWSLENH-------LMTQQLSDDINASVNGVLFSEDGC-RVLSCGNNCMLNVYDLTT-------GMQVCNKV 795 (917)
Q Consensus 731 gs~dG~I~iwDl~~~-------~~~~~l~~~h~~~V~~v~fspdg~-~L~s~s~Dg~I~iwDl~t-------g~~i~~~~ 795 (917)
.+.+|.+..+....- +-+..+.-.....|.++...+++. .+++.+..|..+..++.. ++-+....
T Consensus 161 ~T~~G~~irf~~~ev~~~gR~a~GV~~i~L~~~d~Vv~~~~~~~~~~~ll~vt~~G~gKr~~~~e~~~~~Rg~kGv~~~~ 240 (323)
T 1wp5_A 161 VTHNGYALWFDESEVSIVGVRAAGVKGMNLKEGDYIVSGQLITSKDESIVVATQRGAVKKMKLTEFEKATRAKRGVVILR 240 (323)
T ss_dssp EETTSEEEEEEGGGSCBCCSSCCCEECCCCCTTCCEEEEEEECCTTCEEEEEETTSEEEEEEGGGSCCCCTTSCCEECSC
T ss_pred EeCCCcEEEEEHHHCcccCCCCcCEEEEEeCCCCEEEEEEEEcCCCcEEEEEECCCceEEEEHHHccccCCCCCCEECee
Confidence 899999988876431 112222212345666665545455 788888888877766532 11122221
Q ss_pred -c---CCceE-EEEEeCCCEEEEEeCCCeEEEEECC
Q psy3053 796 -F---EEKLL-CLSWAGEEKVILGGALGMVYLVDLI 826 (917)
Q Consensus 796 -~---~~~i~-~l~~s~~~~lv~gs~dG~I~vwdl~ 826 (917)
. ...+. +..+.++..++..+..|.+....+.
T Consensus 241 ~~~~~~~~l~~~~~v~~~~~i~~it~~g~~ir~~~~ 276 (323)
T 1wp5_A 241 ELKANPHRISGFVVAQDSDTIYLQTEKSFIETIKVG 276 (323)
T ss_dssp CCSSSCCCEEEEEEECTTCEEEEEETTSCEEEEEGG
T ss_pred ecCCCCceEEEEEEeCCCCeEEEEeCCCeEEEEEhh
Confidence 1 11333 3344555566677777766655554
No 366
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=74.82 E-value=1.1e+02 Score=34.20 Aligned_cols=104 Identities=15% Similarity=0.073 Sum_probs=59.6
Q ss_pred ceEEEEEeCCCc-EEEEEecCCceEEEeccCCc---eeeeee---c------cccceEEEEEeCC----CCEEEEEec--
Q psy3053 582 AITAVAICGEGI-SVASVGRDAMLKIHSLKTGR---QERSAV---L------SSMTLSSLCILPD----NCTMLVGCW-- 642 (917)
Q Consensus 582 ~Vtsv~fSpdg~-~Lasgs~Dg~I~IWd~~t~~---~~~~~~---~------~~~~V~sl~~spd----~~~Lasgs~-- 642 (917)
.-++|+|.|||. .|+.+.+.|.|++++..... .+..+. . ....+..++++|+ +.+.++-+.
T Consensus 15 ~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~~ 94 (463)
T 2wg3_C 15 QPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTNQ 94 (463)
T ss_dssp SEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEECC
T ss_pred CceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCCC
Confidence 446899999996 56677889999999754221 111111 1 1346788999996 333333222
Q ss_pred c----------cEEEEEEecc----------CeeeEEec--cCCCceeEEEecCCCCEEEEEECC
Q psy3053 643 D----------SCVVIYDVEC----------GRIVTELA--GHEDAISCVAWDEKRKRLISGSWD 685 (917)
Q Consensus 643 D----------g~I~Iwdl~t----------g~~i~~l~--~H~~~Vt~l~~spd~~~L~Sgs~D 685 (917)
+ ..|.-|.+.. .+.+..+. ........|+|.|||.+.++.+..
T Consensus 95 ~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd~ 159 (463)
T 2wg3_C 95 ERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGDG 159 (463)
T ss_dssp CSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECCT
T ss_pred CCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCCC
Confidence 1 1344455432 12222222 112246789999999877776543
No 367
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=74.69 E-value=1e+02 Score=33.53 Aligned_cols=153 Identities=12% Similarity=0.108 Sum_probs=89.3
Q ss_pred eCCCcEEEEEecCCceEEEeccCCc-------eeeeeec-cccceEEEEEeCCCCEEEEEecccEEEEEEecc-------
Q psy3053 589 CGEGISVASVGRDAMLKIHSLKTGR-------QERSAVL-SSMTLSSLCILPDNCTMLVGCWDSCVVIYDVEC------- 653 (917)
Q Consensus 589 Spdg~~Lasgs~Dg~I~IWd~~t~~-------~~~~~~~-~~~~V~sl~~spd~~~Lasgs~Dg~I~Iwdl~t------- 653 (917)
-|+...+++.+.+|.|+--.+.+-+ -...+.. ....+..+........++..+..|.++-.....
T Consensus 4 I~~e~~~v~lT~~GyIKr~~l~~y~~~~r~g~g~~~~~lke~D~l~~~~~~~t~d~ll~fT~~G~~~~~~~~eip~~~r~ 83 (370)
T 3l6v_A 4 IAPEDVVVTLSHAGYAKRQPVSAYRAQRRGGRGRSAASTKEEDFIDQLWLVNTHDTLLTFTSSGKVFWLPVHQLPEAGSN 83 (370)
T ss_dssp CCCCCEEEEEESSCEEEEEEHHHHHHTCCCCCCSEEEECSCCCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTT
T ss_pred ccCCCEEEEEeCCCEEEEeeHHHhhhhccCCCCceecccCCCCEEEEEEEecCCCEEEEEeCCCeEEEEEHHHCcCCCcc
Confidence 4667788999999999876553211 1111211 234455555555666777778888776665431
Q ss_pred --CeeeEE---eccCCCceeEEEecC---CCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCC
Q psy3053 654 --GRIVTE---LAGHEDAISCVAWDE---KRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDN 725 (917)
Q Consensus 654 --g~~i~~---l~~H~~~Vt~l~~sp---d~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg 725 (917)
|..+.. +. ....|.++.... ++.+|+.++..|.++...+..-............. ...+.+..+......
T Consensus 84 a~G~~i~~ll~L~-~~e~Iv~~~~~~~~~~~~~ll~~T~~G~vKrt~l~e~~~~~~~G~~ai~L-~~~d~lv~v~~~~~~ 161 (370)
T 3l6v_A 84 ARGRPIINWIPLE-SGERVQAVLPVREYADNRYVFMATRNGTVKKTPLSEFAFRLARGKIAINL-DEGDALVGVALTDGD 161 (370)
T ss_dssp SCCEEGGGSCCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCSCCTTCEESSCC-CTTCCEEEEEEECSC
T ss_pred cCCcCHhhccCCC-CCCEEEEEEEeccCCCCcEEEEEeCCCeEEEeEHHHhhcccCCceEEEEe-CCCCEEEEEEEeCCC
Confidence 222111 22 234455544322 45689999999999998865432111111111112 234556666666666
Q ss_pred CEEEEEECCCeEEEEECC
Q psy3053 726 NQLAVGTEAGELIIWSLE 743 (917)
Q Consensus 726 ~~Lasgs~dG~I~iwDl~ 743 (917)
..++..+.+|.+..++..
T Consensus 162 ~~i~l~T~~G~~irf~~~ 179 (370)
T 3l6v_A 162 RDVLLFASNGKTVRFGES 179 (370)
T ss_dssp CEEEEEETTSEEEEEEGG
T ss_pred ceEEEEeCCCeEEEEEcc
Confidence 788888999998888764
No 368
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=73.77 E-value=1e+02 Score=33.21 Aligned_cols=184 Identities=10% Similarity=0.020 Sum_probs=88.0
Q ss_pred CEEEEEecccEEEEEEecc-CeeeEEe--ccCCCceeEEEecC-CCCEEEEEECCC----eEEEEeCCCCCCCccCCcce
Q psy3053 635 CTMLVGCWDSCVVIYDVEC-GRIVTEL--AGHEDAISCVAWDE-KRKRLISGSWDC----TVRVWNTGASWSHMKPSKSL 706 (917)
Q Consensus 635 ~~Lasgs~Dg~I~Iwdl~t-g~~i~~l--~~H~~~Vt~l~~sp-d~~~L~Sgs~Dg----tI~vWdl~~~~~~~~~~~~~ 706 (917)
..|.+|+..| +.+++... ++.-... ......|.+|++.| +...|..++..| .|... ..+..........
T Consensus 23 g~l~vgt~~G-l~~~~~~~~g~~W~~~~~~~~~~~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~s--~D~G~tW~~~~~~ 99 (394)
T 3b7f_A 23 VMLLVATIKG-AWFLASDPARRTWELRGPVFLGHTIHHIVQDPREPERMLMAARTGHLGPTVFRS--DDGGGNWTEATRP 99 (394)
T ss_dssp CEEEEEETTE-EEEEEECTTSCSEEEEEEESTTSEEEEEEECSSSTTCEEEEEEC--CCEEEEEE--SSTTSCCEECSBC
T ss_pred CEEEEEecCc-eEEEECCCCCCCceECCccCCCCceEEEEECCCCCCeEEEEecCCCCCccEEEe--CCCCCCceECCcc
Confidence 4677777766 55555433 2222111 12235699999998 334455555444 33332 2221111111000
Q ss_pred eeecc--------CCCceEEEEEeCC--CCEEEEEECCCeEEEEECCCCeeeEEecC------------------CCCCC
Q psy3053 707 VSQLD--------LDNRIKCLAISKD--NNQLAVGTEAGELIIWSLENHLMTQQLSD------------------DINAS 758 (917)
Q Consensus 707 ~~~~~--------h~~~V~~l~~spd--g~~Lasgs~dG~I~iwDl~~~~~~~~l~~------------------~h~~~ 758 (917)
..... ....|.++++.|. ...+.+++..+.|...+ ..++.-..+.. .....
T Consensus 100 ~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~g~~~ggl~~S~-DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~ 178 (394)
T 3b7f_A 100 PAFNKAPEGETGRVVDHVFWLTPGHASEPGTWYAGTSPQGLFRST-DHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPK 178 (394)
T ss_dssp CCCCCCC----CCCCCEEEEEEECCTTSTTCEEEEEETTEEEEES-STTSBCEECHHHHTCTTHHHHHCCC----CCCCE
T ss_pred ccCCCcccccccccccceeEEEeCCCCCCCEEEEEecCCcEEEEc-CCCCCeEECcCccCCccccccccccccCCCCCCc
Confidence 00000 1235778999872 45666666666665543 23332222210 11235
Q ss_pred eEEEEEecC-CCEEEEEeCCCeEEEEECCCCeEEEEeec--------------CCceEEEEEeCC--CEEEEEeCCCeEE
Q psy3053 759 VNGVLFSED-GCRVLSCGNNCMLNVYDLTTGMQVCNKVF--------------EEKLLCLSWAGE--EKVILGGALGMVY 821 (917)
Q Consensus 759 V~~v~fspd-g~~L~s~s~Dg~I~iwDl~tg~~i~~~~~--------------~~~i~~l~~s~~--~~lv~gs~dG~I~ 821 (917)
+.+|.++|. ...++.+..++.|...+ ..|+....... ...+.++..++. +.+++++..| |.
T Consensus 179 i~~i~~d~~~~~~l~vg~~~ggl~~s~-DgG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~g-l~ 256 (394)
T 3b7f_A 179 MHSILVDPRDPKHLYIGMSSGGVFEST-DAGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCG-IY 256 (394)
T ss_dssp EEEEEECTTCTTCEEEEEETBEEEEES-STTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTE-EE
T ss_pred eeEEEECCCCCCEEEEEECCCCEEEEC-CCCCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCe-EE
Confidence 788999883 44555555444444432 22222211111 124788888875 6777776554 44
Q ss_pred EEE
Q psy3053 822 LVD 824 (917)
Q Consensus 822 vwd 824 (917)
..+
T Consensus 257 ~s~ 259 (394)
T 3b7f_A 257 RMD 259 (394)
T ss_dssp EEE
T ss_pred EeC
Confidence 443
No 369
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster}
Probab=69.97 E-value=1.3e+02 Score=32.84 Aligned_cols=235 Identities=8% Similarity=-0.007 Sum_probs=127.9
Q ss_pred ceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccC-----CcceeeeccCCCceEEEEEeCCCCEEEEEECCCeEEEE
Q psy3053 666 AISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKP-----SKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGELIIW 740 (917)
Q Consensus 666 ~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~-----~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~dG~I~iw 740 (917)
.|..++.. +...+.-..||.|..|-.......-.. .............|..++.. ..+.++-+.+|.|+.|
T Consensus 76 ~v~~va~G--~~h~~~l~~~G~v~~wG~n~~GqLG~~~~~~~~~~~P~~v~~~~~i~~va~G--~~hs~al~~~G~v~~w 151 (423)
T 3mvd_K 76 DAVDISAG--GMHNLVLTKSGDIYSFGCNDEGALGRDTSEDGSESKPDLIDLPGKALCISAG--DSHSACLLEDGRVFAW 151 (423)
T ss_dssp SEEEEEEC--SSEEEEEETTSCEEEEECCSSSTTCSCCCSTTSSSSCEECCCSSCEEEEEEC--SSEEEEEETTSCEEEE
T ss_pred CceEEeeC--CCeEEEEeCCCeEEEeECCCCcCCCCCCcCCccccCCeEEcCCCCEEEEEcC--cCeEEEEeCCCeEEEE
Confidence 46566554 356666788999999976443210000 00111111223456655543 4555666789999999
Q ss_pred EC--CC-Cee--------eEEecCCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCC---------------------
Q psy3053 741 SL--EN-HLM--------TQQLSDDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTG--------------------- 788 (917)
Q Consensus 741 Dl--~~-~~~--------~~~l~~~h~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~tg--------------------- 788 (917)
-. .. +++ ...........|..++.. ..+.++...+|.|+.|-....
T Consensus 152 G~~~n~~GqlG~~~~~~~~~p~~~~~~~~i~~va~G--~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~ 229 (423)
T 3mvd_K 152 GSFRDSHGNMGLTIDGNKRTPIDLMEGTVCCSIASG--ADHLVILTTAGKVFTVGCAEQGQLGRLSERSISGEGRRGKRD 229 (423)
T ss_dssp ECEECSSSEEESBTTBCEEEEEESSTTCCEEEEEEC--SSEEEEEETTSCEEEEECCTTSTTSSCCTTTTTSCSTTTTTT
T ss_pred eCCCCCCCCcCcCCCCCCceeeEecCCCcEEEEecC--CCeEEEEecCCeEEEeeCCcCCccCCCccccccccccccccc
Confidence 75 22 221 111111223456666553 345666678899999963221
Q ss_pred --eEEEE-eecCCceEEEEEeCCCEEEEEeCCCeEEEEECCC-----------CEEEEEEecCCCceEEEeecCCEEEEE
Q psy3053 789 --MQVCN-KVFEEKLLCLSWAGEEKVILGGALGMVYLVDLIQ-----------VQLLKQVRAHKDAVLSLHFDNCTMLVG 854 (917)
Q Consensus 789 --~~i~~-~~~~~~i~~l~~s~~~~lv~gs~dG~I~vwdl~~-----------~~~i~~l~~h~~~V~sis~dg~~Lasg 854 (917)
.+... ......+..++......++.-..+|.|+.|-... .............|..++....+.++-
T Consensus 230 ~~~p~~v~~~~~~~v~~i~~g~~~~~~~~~~~g~v~~wG~n~~gqlg~~~~~~~~~~~p~~~~~~~v~~ia~G~~ht~al 309 (423)
T 3mvd_K 230 LLRPTQLIITRAKPFEAIWATNYCTFMRESQTQVIWATGLNNFKQLAHETKGKEFALTPIKTELKDIRHIAGGQHHTVIL 309 (423)
T ss_dssp TSSCEEECCTTCCCEEEEEEETTEEEEEETTTCCEEEEEECTTCTTSSCCTTCSEEEEEEEECCCSEEEEEECSSEEEEE
T ss_pred ccCCeEEeecCCccEEEEEECCcEEEEEECCCCeEEEEeCCCCCcCCCCCCCCceeeeeEEcCCCCeEEEEcccCeEEEE
Confidence 01111 1112345556555553444446889999996432 111111222245688888877777788
Q ss_pred eCCCeEEEEECcCC------------eEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecC
Q psy3053 855 CWDSCVVIYDVECG------------RIVTELAGHEDAISCVAWDEKRKRLISGNLVGAPKLYATE 908 (917)
Q Consensus 855 s~DG~I~Iwdl~tg------------~~l~~l~~h~~~V~slafSpdg~~LaSgs~DG~V~IWdl~ 908 (917)
..||.|+.|-.... .....+..-...|..++.... .-+....||.|+.|-.+
T Consensus 310 t~~G~v~~wG~n~~GqLG~g~~~~~~~~p~~v~~l~~~v~~ia~G~~--hs~alt~~G~v~~wG~n 373 (423)
T 3mvd_K 310 TTDLKCSVVGRPEYGRLGLGDVKDVVEKPTIVKKLTEKIVSVGCGEV--CSYAVTIDGKLYSWGSG 373 (423)
T ss_dssp ETTCCEEEEECCGGGTTCSSSCCSCEEEEEECTTCCSCEEEEEEETT--EEEEEETTSCEEEEECC
T ss_pred eCCCcEEEEECCCCCCCCCCCccccccCceEeccCCCCEEEEEcCCC--eEEEEcCCCCEEEECCC
Confidence 89999999964210 112223333336777776543 44444789999999765
No 370
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=69.63 E-value=1.2e+02 Score=32.07 Aligned_cols=195 Identities=9% Similarity=0.030 Sum_probs=113.3
Q ss_pred CCCcEEEEEecCCceEEEeccCCceee-------eeec-cccceEEEEEeCCCCEEEEEecccEEEEEEeccC-------
Q psy3053 590 GEGISVASVGRDAMLKIHSLKTGRQER-------SAVL-SSMTLSSLCILPDNCTMLVGCWDSCVVIYDVECG------- 654 (917)
Q Consensus 590 pdg~~Lasgs~Dg~I~IWd~~t~~~~~-------~~~~-~~~~V~sl~~spd~~~Lasgs~Dg~I~Iwdl~tg------- 654 (917)
++...+++.+.+|.|+--.+..-+..+ .+.. ....+..+........++..+..|.++-.....-
T Consensus 6 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~lke~D~l~~~~~~~~~~~ll~~T~~G~~~~~~~~~ip~~~r~~ 85 (312)
T 1suu_A 6 QKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLNDGDEIVIALCVNTHDYLFMISNEGKLYLINAYEIKDSSRAS 85 (312)
T ss_dssp --CEEEEEEETTCBEEEEEGGGSCBCCSSCCCEECCCCCTTCCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCC-----
T ss_pred CCCCEEEEEeCCCEEEEeEHHHhhccccCCCCceecccCCCCEEEEEEEECCCCEEEEEECCCeEEEEEHHHCCCCCccC
Confidence 456678889999999887765432221 1111 2233445555555667778888888777665421
Q ss_pred --eee---EEeccCCCceeEEEecC---CCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCC
Q psy3053 655 --RIV---TELAGHEDAISCVAWDE---KRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNN 726 (917)
Q Consensus 655 --~~i---~~l~~H~~~Vt~l~~sp---d~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~ 726 (917)
..+ -.+. ..+.|.++...+ ++.+++.++..|.++...+..-........... .....+.+..+....++.
T Consensus 86 ~G~~i~~~l~l~-~~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r~~G~~~i-~L~~~d~lv~~~~~~~~~ 163 (312)
T 1suu_A 86 KGQNISELINLG-DQEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRGVIVI-KLNDKDFVTSAEIVFKDE 163 (312)
T ss_dssp --CBGGGTSCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC----CEECB-CCCTTCCEEEEEEECTTC
T ss_pred CCcChhhccCCC-CCCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccCCCcEEEE-ecCCCCEEEEEEEeCCCC
Confidence 110 0122 123455544332 467888999999999988754321111111111 223356677666666667
Q ss_pred EEEEEECCCeEEEEECCCC-------eeeEEecCCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECC
Q psy3053 727 QLAVGTEAGELIIWSLENH-------LMTQQLSDDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLT 786 (917)
Q Consensus 727 ~Lasgs~dG~I~iwDl~~~-------~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~ 786 (917)
.++..+.+|.+..+....- .-+..+.-.....|.++..-.++..+++.+..|.....++.
T Consensus 164 ~i~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~~~d~vv~~~~v~~~~~l~~vt~~G~~kr~~~~ 230 (312)
T 1suu_A 164 KVICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLKEGDLFVKVLSVKENPYLLIVSENGYGKRLNMS 230 (312)
T ss_dssp EEEEEETTSEEEEEEGGGSCBCCTTBCCEECCCCCTTCCEEEEEECTTCSEEEEEETTSEEEEEEGG
T ss_pred EEEEEeCCCcEEEEEHHHccccCCCCCCeEeEEeCCCCEEEEEEEECCCCeEEEEECCCceEEEEHH
Confidence 8888999999999887531 11222221234566666665566678888889988888763
No 371
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A
Probab=61.70 E-value=1.8e+02 Score=31.55 Aligned_cols=193 Identities=12% Similarity=0.087 Sum_probs=104.7
Q ss_pred ceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCcc-CCc--ceeeecc--CCCceEEEEEeCCCCEEEEEECCCeEEEE
Q psy3053 666 AISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMK-PSK--SLVSQLD--LDNRIKCLAISKDNNQLAVGTEAGELIIW 740 (917)
Q Consensus 666 ~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~-~~~--~~~~~~~--h~~~V~~l~~spdg~~Lasgs~dG~I~iw 740 (917)
.|..++... ...+....||.|..|-.......-. ... ....... ....|..++.. ..+.++-+.+|.|+.|
T Consensus 122 ~i~~ia~G~--~h~~alt~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~i~~va~G--~~hs~alt~~G~v~~w 197 (406)
T 4d9s_A 122 RIKQIACGD--SHCLAVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGIRIKMVAAG--AEHTAAVTEDGDLYGW 197 (406)
T ss_dssp CEEEEEECS--SEEEEEETTSCEEEEECCTTSTTCSSSCCCEEEEEECGGGTTCCEEEEEEC--SSEEEEEETTSCEEEE
T ss_pred CEEEEEECh--hheEEEcCCCcEEEeCCCCCccCCCCCCCCcccceEecccCCCcEEEEecC--CCeEEEEeCCCCEEEe
Confidence 566666543 5566667899999997554321100 000 0001111 12245555543 4566666789999999
Q ss_pred ECCCC----------e-eeEEecCCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCC----------eEEE-Eee-c-
Q psy3053 741 SLENH----------L-MTQQLSDDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTG----------MQVC-NKV-F- 796 (917)
Q Consensus 741 Dl~~~----------~-~~~~l~~~h~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~tg----------~~i~-~~~-~- 796 (917)
-.... . ....+.......|..++.. ..+.++...+|.|+.|-.... .... ... .
T Consensus 198 G~n~~GqlG~g~~~~~~~p~~v~~~~~~~i~~va~G--~~ht~~l~~~G~v~~wG~n~~GqlG~g~~~~~~~p~~v~~~~ 275 (406)
T 4d9s_A 198 GWGRYGNLGLGDRTDRLVPERVTSTGGEKMSMVACG--WRHTISVSYSGALYTYGWSKYGQLGHGDLEDHLIPHKLEALS 275 (406)
T ss_dssp ECCTTSTTCSSSSCCEEEEEECCCSTTCCEEEEEEC--SSEEEEEETTCCEEEEECCTTSTTCSSSCCCEEEEEECGGGT
T ss_pred eCCCCCCCCCCCCCCcCccEEecccCCceEEEEEEC--CCcEEEEcCCCCEEEeeCCCCCCCCCCCCcCccccEEecccC
Confidence 64321 1 1122221222455555543 345556677888888864321 1111 111 1
Q ss_pred CCceEEEEEeCCCEEEEEeCCCeEEEEECCCC------------EEEEEEecCCCceEEEeecCCEEEEEeCCCeEEEEE
Q psy3053 797 EEKLLCLSWAGEEKVILGGALGMVYLVDLIQV------------QLLKQVRAHKDAVLSLHFDNCTMLVGCWDSCVVIYD 864 (917)
Q Consensus 797 ~~~i~~l~~s~~~~lv~gs~dG~I~vwdl~~~------------~~i~~l~~h~~~V~sis~dg~~Lasgs~DG~I~Iwd 864 (917)
...+..++.... ..++-..+|.|+.|-.... .+..........|..++......++-..||.|+.|-
T Consensus 276 ~~~v~~i~~G~~-hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~va~G~~hs~alt~~G~v~~wG 354 (406)
T 4d9s_A 276 NSFISQISGGWR-HTMALTSDGKLYGWGWNKFGQVGVGNNLDQCSPVQVRFPDDQKVVQVSCGWRHTLAVTERNNVFAWG 354 (406)
T ss_dssp TSCEEEEEECSS-EEEEEETTSCEEEEECCTTSTTCSSSSSCEEEEEEECCGGGCCEEEEEECSSEEEEEETTSCEEEEE
T ss_pred CCCEEEEEecCC-EEEEEcCCCeEEEeeCCCCCCCCCCCCCCCccCEEEeccCCCcEEEEEeCCCeEEEEeCCCCEEEec
Confidence 223555555444 6667788999999965421 111111122346778877777777778899999996
Q ss_pred C
Q psy3053 865 V 865 (917)
Q Consensus 865 l 865 (917)
.
T Consensus 355 ~ 355 (406)
T 4d9s_A 355 R 355 (406)
T ss_dssp C
T ss_pred C
Confidence 4
No 372
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=56.87 E-value=2.1e+02 Score=30.67 Aligned_cols=286 Identities=9% Similarity=-0.020 Sum_probs=131.1
Q ss_pred EEEEEecCCceEEEeccC-Cceeeee--eccccceEEEEEeC-CCCEEEEEeccc----EEEEEEeccCeeeEEecc---
Q psy3053 594 SVASVGRDAMLKIHSLKT-GRQERSA--VLSSMTLSSLCILP-DNCTMLVGCWDS----CVVIYDVECGRIVTELAG--- 662 (917)
Q Consensus 594 ~Lasgs~Dg~I~IWd~~t-~~~~~~~--~~~~~~V~sl~~sp-d~~~Lasgs~Dg----~I~Iwdl~tg~~i~~l~~--- 662 (917)
.|+.|...| +.+++... +..-... ......|.++++.| +...+.+++..| .|.. ..+.|+.-..+..
T Consensus 24 ~l~vgt~~G-l~~~~~~~~g~~W~~~~~~~~~~~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~-s~D~G~tW~~~~~~~~ 101 (394)
T 3b7f_A 24 MLLVATIKG-AWFLASDPARRTWELRGPVFLGHTIHHIVQDPREPERMLMAARTGHLGPTVFR-SDDGGGNWTEATRPPA 101 (394)
T ss_dssp EEEEEETTE-EEEEEECTTSCSEEEEEEESTTSEEEEEEECSSSTTCEEEEEEC--CCEEEEE-ESSTTSCCEECSBCCC
T ss_pred EEEEEecCc-eEEEECCCCCCCceECCccCCCCceEEEEECCCCCCeEEEEecCCCCCccEEE-eCCCCCCceECCcccc
Confidence 466666666 44444332 2221111 23345689999998 334444554444 3332 2233332222211
Q ss_pred -----------CCCceeEEEecC-C-CCEEEEEECCCeEEEEeCCCCCCCccCCcceee-e------------ccCCCce
Q psy3053 663 -----------HEDAISCVAWDE-K-RKRLISGSWDCTVRVWNTGASWSHMKPSKSLVS-Q------------LDLDNRI 716 (917)
Q Consensus 663 -----------H~~~Vt~l~~sp-d-~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~-~------------~~h~~~V 716 (917)
+...|.++++.| + ...+..++..+.|...+ .+............ . ......+
T Consensus 102 ~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~g~~~ggl~~S~--DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i 179 (394)
T 3b7f_A 102 FNKAPEGETGRVVDHVFWLTPGHASEPGTWYAGTSPQGLFRST--DHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKM 179 (394)
T ss_dssp CCCCC----CCCCCEEEEEEECCTTSTTCEEEEEETTEEEEES--STTSBCEECHHHHTCTTHHHHHCCC----CCCCEE
T ss_pred CCCcccccccccccceeEEEeCCCCCCCEEEEEecCCcEEEEc--CCCCCeEECcCccCCccccccccccccCCCCCCce
Confidence 112577888886 2 45666666666554432 22111111000000 0 0123457
Q ss_pred EEEEEeCC-CCEEEEEECCCeEEEEECCCCeeeEEecCCC------------CCCeEEEEEecC-CCEEEEEeCCCeEEE
Q psy3053 717 KCLAISKD-NNQLAVGTEAGELIIWSLENHLMTQQLSDDI------------NASVNGVLFSED-GCRVLSCGNNCMLNV 782 (917)
Q Consensus 717 ~~l~~spd-g~~Lasgs~dG~I~iwDl~~~~~~~~l~~~h------------~~~V~~v~fspd-g~~L~s~s~Dg~I~i 782 (917)
.++.++|. ...+.+++.++.|...+ ..++.-..+.... ...+.++++.|+ ...++++...+ |..
T Consensus 180 ~~i~~d~~~~~~l~vg~~~ggl~~s~-DgG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~g-l~~ 257 (394)
T 3b7f_A 180 HSILVDPRDPKHLYIGMSSGGVFEST-DAGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCG-IYR 257 (394)
T ss_dssp EEEEECTTCTTCEEEEEETBEEEEES-STTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTE-EEE
T ss_pred eEEEECCCCCCEEEEEECCCCEEEEC-CCCCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCe-EEE
Confidence 89999883 45556665555554432 3333333322110 134889999985 45666666544 444
Q ss_pred EECCCCeEEEEee--cC----CceEEEEEeC--CCEEEEEeC-----------CCeEEEEECCC-CEEEEEEe-cCC--C
Q psy3053 783 YDLTTGMQVCNKV--FE----EKLLCLSWAG--EEKVILGGA-----------LGMVYLVDLIQ-VQLLKQVR-AHK--D 839 (917)
Q Consensus 783 wDl~tg~~i~~~~--~~----~~i~~l~~s~--~~~lv~gs~-----------dG~I~vwdl~~-~~~i~~l~-~h~--~ 839 (917)
.+- .++...... .. ..+.+++.++ .+.+.+++. ++...+|...+ ++.-..+. +-. .
T Consensus 258 s~D-~G~tW~~~~~~l~~~~~~~~~~i~~~p~~~~~l~~~t~~~~~~w~~~~~~~~~~~~~S~DgG~tW~~~~~glp~~~ 336 (394)
T 3b7f_A 258 MDR-REGVWKRIGDAMPREVGDIGFPIVVHQRDPRTVWVFPMDGSDVWPRVSPGGKPAVYVTRDAGESWQRQDRGLPTDQ 336 (394)
T ss_dssp EET-TTTEEECGGGGSCTTTCSCEEEEEECSSCTTCEEEEECBCCSSTTCCBCCSSCCEEEESSTTSCCEEECBTSCCSS
T ss_pred eCC-CCCcceECCCCCCCCCccceEEEEECCCCCCEEEEEeccCCccceeecCCCceeEEEECCCCCCceECCCCCCCcc
Confidence 432 233333222 12 2345677763 345666542 23344554443 22222221 101 0
Q ss_pred -------ceEEEee-cCCEEEEEeCCCeEEEEECcCCeEEEEecCCCCCEEEEEEc
Q psy3053 840 -------AVLSLHF-DNCTMLVGCWDSCVVIYDVECGRIVTELAGHEDAISCVAWD 887 (917)
Q Consensus 840 -------~V~sis~-dg~~Lasgs~DG~I~Iwdl~tg~~l~~l~~h~~~V~slafS 887 (917)
...++++ ++..|+.++.++.|..- .+.|+.-..+..+-..+.+++|.
T Consensus 337 ~~~~~~~~~~~~~p~~~~~l~~g~~~g~l~~S-~D~G~tW~~~~~~lp~~~~v~~~ 391 (394)
T 3b7f_A 337 AWLTVKRQAMTADAHAPVGVYFGTTGGEIWAS-ADEGEHWQCIASHLPHIYAVQSA 391 (394)
T ss_dssp CCCCCCTBSEEECCSSSCCEEEECTTSCEEEE-SSTTSBCEEEECSCSCEEEEEEE
T ss_pred ccceEEEEEEEECCCCCCEEEEEeCCCeEEEE-CCCCCCceEcccCCCCeeEEEEe
Confidence 1133444 34556677666654432 23344333444444567777764
No 373
>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*
Probab=55.94 E-value=3.3e+02 Score=32.64 Aligned_cols=167 Identities=9% Similarity=0.015 Sum_probs=79.9
Q ss_pred CcceEEEEEeCC-CcEEEEEecCCceEEEeccCCceeeeeec-------cccceEEEEEeCCC-CEEEEEecccE----E
Q psy3053 580 KEAITAVAICGE-GISVASVGRDAMLKIHSLKTGRQERSAVL-------SSMTLSSLCILPDN-CTMLVGCWDSC----V 646 (917)
Q Consensus 580 ~~~Vtsv~fSpd-g~~Lasgs~Dg~I~IWd~~t~~~~~~~~~-------~~~~V~sl~~spd~-~~Lasgs~Dg~----I 646 (917)
.+.|.+|+++|. ...++.++..+.|...+ +.|+.=..+.. ....+.++++.|.. ..+.++..+.. -
T Consensus 14 ~g~i~~i~~~p~~~~~~~a~~~~ggv~rS~-DgG~tW~~~~~~~~~~~~~~~~i~~ia~dp~~~~~i~~~~g~~~~~~~~ 92 (789)
T 1sqj_A 14 GGYITGIVAHPKTKDLLYARTDIGGAYRWD-AGTSKWIPLNDFIEAQDMNIMGTESIALDPNNPDRLYLAQGRYVGDEWA 92 (789)
T ss_dssp CSCEEEEEECSSSTTCEEEEESSSCEEEEE-TTTTEEEESCTTCCGGGGGGCSEEEEEEETTEEEEEEEEECSCTTSSCC
T ss_pred CCcEEEEEECCCCCCEEEEEecCCCEEEec-CCCCCeeECccCCCcccccCCceeEEEECCCCCCEEEEEeCccCCCccc
Confidence 458999999986 35666676666554333 22332222221 23468899999843 44444443211 2
Q ss_pred EEEEe-ccCeeeEEecc--C-----C--CceeEEEecCC-CCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCc
Q psy3053 647 VIYDV-ECGRIVTELAG--H-----E--DAISCVAWDEK-RKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNR 715 (917)
Q Consensus 647 ~Iwdl-~tg~~i~~l~~--H-----~--~~Vt~l~~spd-~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~ 715 (917)
.||.. +.|+.-..+.. . . ..+..++++|. .+.++.+...+. +|....+...................
T Consensus 93 ~v~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~iav~p~~~~~v~~g~~~~g--l~~S~DgG~TW~~~~~~~~~~~~~~~ 170 (789)
T 1sqj_A 93 AFYVSEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMGTRTEG--IWKSSDRAKTWTNVTSIPDAFTNGIG 170 (789)
T ss_dssp EEEEESSTTSEEEEEECSSCCCTTSTTTTSCCCEEEETTEEEEEEEECSSSC--EEEESSTTSSCEEETTSCCCCSTTTC
T ss_pred EEEEECCCCCcceeccCCcccCccCCCccceeEEEEcCCCCCEEEEEeccCC--EEEECCCCcccCCCccCccccCCCCC
Confidence 34433 33433222211 0 1 13567888874 345666553433 44333332111111100000011245
Q ss_pred eEEEEEeCC-CCEEEEEECC-CeEEEEECCCCeeeEE
Q psy3053 716 IKCLAISKD-NNQLAVGTEA-GELIIWSLENHLMTQQ 750 (917)
Q Consensus 716 V~~l~~spd-g~~Lasgs~d-G~I~iwDl~~~~~~~~ 750 (917)
+..+.++|. +..+.++..+ +.|. ...+.|+.-..
T Consensus 171 ~~~i~~~p~~~~~~~~~~~~~~~v~-~S~DgG~TW~~ 206 (789)
T 1sqj_A 171 YTSVIFDPERNGTIYASATAPQGMY-VTHDGGVSWEP 206 (789)
T ss_dssp EEEEEECTTSTTCEEEEESSTTCEE-EESSTTSSCEE
T ss_pred eEEEEECCCCCCEEEEEEcCCCeEE-EEcCCCcCccc
Confidence 788999884 4566666654 4443 34444444333
No 374
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=53.39 E-value=2.2e+02 Score=29.86 Aligned_cols=162 Identities=13% Similarity=0.086 Sum_probs=92.6
Q ss_pred ceEEEEEeCCCcEEEEEecCCceEEEeccC---------Cceee-eeec-cccceEEEEEeC---CCCEEEEEecccEEE
Q psy3053 582 AITAVAICGEGISVASVGRDAMLKIHSLKT---------GRQER-SAVL-SSMTLSSLCILP---DNCTMLVGCWDSCVV 647 (917)
Q Consensus 582 ~Vtsv~fSpdg~~Lasgs~Dg~I~IWd~~t---------~~~~~-~~~~-~~~~V~sl~~sp---d~~~Lasgs~Dg~I~ 647 (917)
.+..+........++..+..|.+.-..... |..+. .+.. .+..|.++...+ ++..++..+..|.++
T Consensus 48 ~l~~~~~~~~~~~ll~~T~~G~~~~~~~~~ip~~~r~~~G~~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~k 127 (312)
T 1suu_A 48 EIVIALCVNTHDYLFMISNEGKLYLINAYEIKDSSRASKGQNISELINLGDQEEILTIKNSKDLTDDAYLLLTTASGKIA 127 (312)
T ss_dssp CEEEEEEEETTCEEEEEETTSEEEEEEGGGSCC-------CBGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEE
T ss_pred EEEEEEEECCCCEEEEEECCCeEEEEEHHHCCCCCccCCCcChhhccCCCCCCEEEEEEEeccCCCCCEEEEEeCCCeEE
Confidence 344444444455666777788766555431 11110 1111 223455554433 466788899999999
Q ss_pred EEEecc-------CeeeEEeccCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCc-ceeeeccCCCceEEE
Q psy3053 648 IYDVEC-------GRIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSK-SLVSQLDLDNRIKCL 719 (917)
Q Consensus 648 Iwdl~t-------g~~i~~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~-~~~~~~~h~~~V~~l 719 (917)
...+.. |.....+.. .+.+-.+....++..++..+.+|.+..+....-....+... .........+.|.++
T Consensus 128 r~~l~~~~~~r~~G~~~i~L~~-~d~lv~~~~~~~~~~i~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~~~d~vv~~ 206 (312)
T 1suu_A 128 RFESTDFKAVKSRGVIVIKLND-KDFVTSAEIVFKDEKVICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLKEGDLFVKV 206 (312)
T ss_dssp EEEGGGGCC----CEECBCCCT-TCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTBCCEECCCCCTTCCEEEE
T ss_pred EEEHHHhhccCCCcEEEEecCC-CCEEEEEEEeCCCCEEEEEeCCCcEEEEEHHHccccCCCCCCeEeEEeCCCCEEEEE
Confidence 888743 222233433 45566655555566788899999999988754211111111 111112235566676
Q ss_pred EEeCCCCEEEEEECCCeEEEEECCC
Q psy3053 720 AISKDNNQLAVGTEAGELIIWSLEN 744 (917)
Q Consensus 720 ~~spdg~~Lasgs~dG~I~iwDl~~ 744 (917)
..-.++..+++.+..|.....++..
T Consensus 207 ~~v~~~~~l~~vt~~G~~kr~~~~e 231 (312)
T 1suu_A 207 LSVKENPYLLIVSENGYGKRLNMSK 231 (312)
T ss_dssp EECTTCSEEEEEETTSEEEEEEGGG
T ss_pred EEECCCCeEEEEECCCceEEEEHHH
Confidence 6655667788889999998888753
No 375
>1y5o_A TFB1, RNA polymerase II transcription factor B 73 kDa subunit; TFIIH, PH domain, phosphoinositides, VP16; NMR {Saccharomyces cerevisiae} SCOP: b.55.1.9 PDB: 2gs0_A 2k2u_A 2l2i_A 2lox_A*
Probab=50.92 E-value=1.3e+02 Score=26.62 Aligned_cols=76 Identities=14% Similarity=0.168 Sum_probs=56.1
Q ss_pred EeceEEEEecC----eEEEEeCCCCCCceEEEEeccccceeeeccccCcceEEEEEEec--------CC------CceeE
Q psy3053 172 VNPGRIVLSST----NLYFQPFNNIEPHKLLKVRLAGIKRIIRRRFLLQQVGIEIYFKD--------LE------PVKYL 233 (917)
Q Consensus 172 ~~~g~~~~~~~----~~~f~~~~~~~~~~~~~~~~~~i~~~~~r~~~~~~~~~e~~~~~--------~~------~~~~~ 233 (917)
...|.|.|+.+ .|.+.|..+ .+.+.|++..|..+..-.=---..-|-||.+. ++ .-..+
T Consensus 11 Kk~G~lti~eD~~p~~l~W~p~~g---~~~isI~l~~It~LQqTp~ts~KvmLKI~~k~~~~~~~~~~~~~~~~~~p~~~ 87 (115)
T 1y5o_A 11 KVSGIIAINEDVSPAELTWRSTDG---DKVHTVVLSTIDKLQATPASSEKMMLRLIGKVDESKKRKDNEGNEVVPKPQRH 87 (115)
T ss_dssp SCEEEEEEECSSSSCEEEEEESSS---SCEEEEESTTCSEEEECCTTCSSEEEEEEECSCCSSSCCCCSSCCSSCCCEEE
T ss_pred ecccEEEEccCCCcceEEEEECCC---CccEEEEhhhhhhhhcCCCCCCceEEEEEEeccccccccCCCcCCCCCCcceE
Confidence 45799999999 899999554 56799999999987665555556678888773 21 11238
Q ss_pred EEecCChhhHHHHHHHH
Q psy3053 234 YLTLKTQGARDTLYNAL 250 (917)
Q Consensus 234 ~~~f~~~~~~~~~~~~~ 250 (917)
.|.|.+..++|.|=+.|
T Consensus 88 ~F~FtnR~~~d~IKd~L 104 (115)
T 1y5o_A 88 MFSFNNRTVMDNIKMTL 104 (115)
T ss_dssp EEEESCHHHHHHHHHHH
T ss_pred EEEeCCHHHHHHHHHHH
Confidence 89999987777765554
No 376
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=50.87 E-value=2.5e+02 Score=29.74 Aligned_cols=161 Identities=11% Similarity=0.122 Sum_probs=92.5
Q ss_pred ceEEEEEeCCCcEEEEEecCCceEE---EeccCC------ceeee-eec-cccceEEEEEeC---CCCEEEEEecccEEE
Q psy3053 582 AITAVAICGEGISVASVGRDAMLKI---HSLKTG------RQERS-AVL-SSMTLSSLCILP---DNCTMLVGCWDSCVV 647 (917)
Q Consensus 582 ~Vtsv~fSpdg~~Lasgs~Dg~I~I---Wd~~t~------~~~~~-~~~-~~~~V~sl~~sp---d~~~Lasgs~Dg~I~ 647 (917)
.+..+........|+.-+..|.+.- |++..+ ..+.. +.. ....|.++...+ +...++..+.+|.++
T Consensus 43 ~~~~~~~~~t~d~ll~fT~~Gr~y~~~~~~lp~~~r~~~G~~i~~~l~l~~~e~i~~~~~~~~~~~e~~~v~~T~~G~iK 122 (327)
T 3uc1_A 43 IVAHFFVCSTHDLILFFTTQGRVYRAKAYDLPEASRTARGQHVANLLAFQPEERIAQVIQIRGYTDAPYLVLATRNGLVK 122 (327)
T ss_dssp CEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCSSSCCEEHHHHTTCCTTCCEEEEEEESSTTSSSEEEEEETTSEEE
T ss_pred EEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCcCCCccCCCEEHHHccCCCCCCEEEEEEEeccCCCCCEEEEEcCCCEEE
Confidence 3444444444445555556665443 344322 11111 111 234455554443 577999999999999
Q ss_pred EEEecc-------CeeeEEeccCCCceeEEEecCCCCEEEEEECCCeEEEEeCC--CCCCCccCCc-ceeeeccCCCceE
Q psy3053 648 IYDVEC-------GRIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTG--ASWSHMKPSK-SLVSQLDLDNRIK 717 (917)
Q Consensus 648 Iwdl~t-------g~~i~~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~--~~~~~~~~~~-~~~~~~~h~~~V~ 717 (917)
--.+.. |.....+.. .+.+..+........|+..+..|.+..+... .-....+... ...........|.
T Consensus 123 r~~l~~~~~~~r~G~~~i~lke-~D~lv~~~~~~~~d~ill~T~~G~~~rf~~~~~eip~~gr~a~Gv~~i~L~~~d~Vv 201 (327)
T 3uc1_A 123 KSKLTDFDSNRSGGIVAVNLRD-NDELVGAVLCSAGDDLLLVSANGQSIRFSATDEALRPMGRATSGVQGMRFNIDDRLL 201 (327)
T ss_dssp EEEGGGGCCCCSSCEESCBCCT-TCCEEEEEEECTTCEEEEEETTSEEEEEECCTTTSCCCCTTSBCEESSCCCTTCCEE
T ss_pred EeEHHHhhccccCceEEEEECC-CCEEEEEEEecCCCEEEEEECCCeEEEEECcccccCcCCcCCCCeeeecCCCCCEEE
Confidence 988764 222223333 3445555555556778888999998888776 3211111101 1111234456777
Q ss_pred EEEEeCCCCEEEEEECCCeEEEEECC
Q psy3053 718 CLAISKDNNQLAVGTEAGELIIWSLE 743 (917)
Q Consensus 718 ~l~~spdg~~Lasgs~dG~I~iwDl~ 743 (917)
++...+++..++..+..|.++.-.+.
T Consensus 202 ~~~~~~~~~~ll~~T~~G~~Krt~l~ 227 (327)
T 3uc1_A 202 SLNVVREGTYLLVATSGGYAKRTAIE 227 (327)
T ss_dssp EEEECCTTCEEEEEETTSEEEEEEGG
T ss_pred EEEEECCCCEEEEEeCCCcEEEEEHH
Confidence 77777777789999999999888764
No 377
>2zux_A YESW protein; beta-propeller, lyase, rhamnose complex; HET: RAM; 1.32A {Bacillus subtilis} PDB: 2z8s_A* 2z8r_A*
Probab=50.40 E-value=3.4e+02 Score=31.17 Aligned_cols=264 Identities=15% Similarity=0.144 Sum_probs=136.6
Q ss_pred cCCcceEEEEEeCCCc-EEEEEecCCc----------------------------eEEEeccCCceeeeeecc--ccce-
Q psy3053 578 SHKEAITAVAICGEGI-SVASVGRDAM----------------------------LKIHSLKTGRQERSAVLS--SMTL- 625 (917)
Q Consensus 578 ~H~~~Vtsv~fSpdg~-~Lasgs~Dg~----------------------------I~IWd~~t~~~~~~~~~~--~~~V- 625 (917)
.|-..+....+.-||+ -|+....+|+ +.+++-.+|+.+.+.... ...+
T Consensus 176 a~yt~~~V~DlDGDGkaEIvv~TadGt~dg~g~~ig~~~~dyrn~~g~il~GpEyL~vfdG~TG~~l~~~~~~p~rg~~~ 255 (591)
T 2zux_A 176 AHYTQFMVYDLDGDGKAEVAMKTADGTKDGTGKVIGNANADYRNEQGRVLSGPEYLTVFQGSTGKELVTANFEPARGNVS 255 (591)
T ss_dssp TTSCCCEEECSSSSSSCEEEEEECTTCBCTTSCBCSSTTCCCBCTTSCBCSSCCEEEEEETTTCCEEEEEECSSCCCCGG
T ss_pred cccCceeEEEcCCCCcceEEEEccCCcccCCceEecccccccccccceeecCCcEEEEEeCCCCCEEecccCCCCCCccc
Confidence 3666777788888885 4566655665 778888888877665432 1111
Q ss_pred --------------EEEEEe-CCCCEEEEEe---cccEEEEEEeccCeeeEEeccCC-------------CceeEEEecC
Q psy3053 626 --------------SSLCIL-PDNCTMLVGC---WDSCVVIYDVECGRIVTELAGHE-------------DAISCVAWDE 674 (917)
Q Consensus 626 --------------~sl~~s-pd~~~Lasgs---~Dg~I~Iwdl~tg~~i~~l~~H~-------------~~Vt~l~~sp 674 (917)
.+++.. -+...++.+- ....+..||...+++......+. .......+.-
T Consensus 256 ~WGD~ygnR~drf~~~vayLDG~~Ps~v~~rGyYtr~~v~A~d~~~~~L~~~W~~d~~~~~~~~~~gqg~h~~~vaDVDg 335 (591)
T 2zux_A 256 DWGDSYGNRVDRFLAGIAYLDGQRPSLIMTRGYYAKTMLVAYNFRDGKLSKLWTLDSSKSGNEAFAGQGNHNLSIADVDG 335 (591)
T ss_dssp GGTCSSSSGGGCEEEEEECTTSSSCEEEEEECCSSSCEEEEEEEETTEEEEEEEEETTSTTCGGGSSCCCSCCEEECCSS
T ss_pred ccccccccccccceeeEEECCCCCceEEEeccccceeEEEEEECCCCceEEEEEecCCCCCcccccccCCCCCeeEeCCC
Confidence 122221 1112333322 23358888888877644332111 1223333333
Q ss_pred CCC-EEEEEE----CCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCC--CEEEEEECCC----eEEEEECC
Q psy3053 675 KRK-RLISGS----WDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDN--NQLAVGTEAG----ELIIWSLE 743 (917)
Q Consensus 675 d~~-~L~Sgs----~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg--~~Lasgs~dG----~I~iwDl~ 743 (917)
||+ -|+.|+ .||++ +|.. ..+|...+....+.|+. -.++.+.+++ -..+.|..
T Consensus 336 DG~dEIv~Gs~~iD~dG~~-L~st---------------~~gHGDa~hv~dldP~r~GlEv~~~~E~~~~~~G~~~~dA~ 399 (591)
T 2zux_A 336 DGKDEIIFGSMAVDHDGKG-MYST---------------GLGHGDALHTGDLDPGRPGLEVFQVHEDKNAKYGLSFRDAA 399 (591)
T ss_dssp SSSCEEEETTEEECTTSCE-EEEC---------------SCCCCSCEEEECCCTTSSSCEEEEECCCTTSSCSEEEEETT
T ss_pred CCCceEEEeeeEECCCCCE-eeeC---------------CCCCCCeeEEeecCCCCCCcEEEEEecCCCCCCccEEEECC
Confidence 443 233322 34443 4543 23788888888888874 4566655541 35568999
Q ss_pred CCeeeEEecCC-CCCCeEEEEEecC--CCEEEEEeCCCeEEEEECCCCeEEEEeecCCceEEEEEeCCCE--EEEEeCCC
Q psy3053 744 NHLMTQQLSDD-INASVNGVLFSED--GCRVLSCGNNCMLNVYDLTTGMQVCNKVFEEKLLCLSWAGEEK--VILGGALG 818 (917)
Q Consensus 744 ~~~~~~~l~~~-h~~~V~~v~fspd--g~~L~s~s~Dg~I~iwDl~tg~~i~~~~~~~~i~~l~~s~~~~--lv~gs~dG 818 (917)
+++.+...... ..+......|.|+ |-.+.+ ++ .+++.. |+.+........-..+-|+++.. ++- .+
T Consensus 400 tG~vlw~~~~~~d~Gr~~~~Didp~~pG~E~w~---~~--~l~~~~-G~~i~~~~p~~~N~~i~WdGDl~relld---~~ 470 (591)
T 2zux_A 400 TGKILWGVYAGKDVGRGMAADIDPRYPGQEVWA---NG--SLYSAK-GVKIGSGVPSSTNFGIWWDGDLLREQLD---SN 470 (591)
T ss_dssp TCCEEEEECCSSCCCCEEEECCCTTSSSCEEEE---TT--EEECTT-SCBCSSCCCSCCSEEECCSSSSSCEEEE---TT
T ss_pred CCcEEEEcCCCCCCCceeEEecCCCCCceEEEe---cC--ceECCC-CCEecCCCCCCcceeEEECCCCcHhhhC---Cc
Confidence 99998887522 2344444445554 223333 22 356643 44433221112233566776532 332 24
Q ss_pred eEEEEECCCCEEEEEEec---------CCCceEEE----eecCCEEEEEeCCCeEEEEECc
Q psy3053 819 MVYLVDLIQVQLLKQVRA---------HKDAVLSL----HFDNCTMLVGCWDSCVVIYDVE 866 (917)
Q Consensus 819 ~I~vwdl~~~~~i~~l~~---------h~~~V~si----s~dg~~Lasgs~DG~I~Iwdl~ 866 (917)
.|.-|+...++....+.. ...+..+. .+-...|+-...+..++||...
T Consensus 471 ~i~k~~~~~~~~~~l~~~~g~~snngtk~~P~l~aDi~GDwREEvI~~t~D~~~LrIYtt~ 531 (591)
T 2zux_A 471 RIDKWDYQNGVSKNMLTASGAAANNGTKATPTLQADLLGDWREEVVWRTEDSSALRIYTTT 531 (591)
T ss_dssp EEEEEETTTTEEEEEEECTTEECBSGGGCBCSEEECCSSSSSCEEEEEETTSSEEEEECCC
T ss_pred eEEecccCCCceeEEEeecccccCCCCCCCEeeEEeccccCeeEEEEEeCCCCeEEEEeCC
Confidence 788899877764333332 11222222 2233344444455679999764
No 378
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster}
Probab=49.86 E-value=2.8e+02 Score=30.08 Aligned_cols=227 Identities=10% Similarity=0.045 Sum_probs=119.5
Q ss_pred CCCEEEEEecccEEEEEEecc-Ce------------eeEEeccCCCceeEEEecCCCCEEEEEECCCeEEEEeC--CCCC
Q psy3053 633 DNCTMLVGCWDSCVVIYDVEC-GR------------IVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNT--GASW 697 (917)
Q Consensus 633 d~~~Lasgs~Dg~I~Iwdl~t-g~------------~i~~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl--~~~~ 697 (917)
.+...+.-..||.|+.|-... |+ ....+. ....|..++... ...+....||.|..|-. ....
T Consensus 83 G~~h~~~l~~~G~v~~wG~n~~GqLG~~~~~~~~~~~P~~v~-~~~~i~~va~G~--~hs~al~~~G~v~~wG~~~n~~G 159 (423)
T 3mvd_K 83 GGMHNLVLTKSGDIYSFGCNDEGALGRDTSEDGSESKPDLID-LPGKALCISAGD--SHSACLLEDGRVFAWGSFRDSHG 159 (423)
T ss_dssp CSSEEEEEETTSCEEEEECCSSSTTCSCCCSTTSSSSCEECC-CSSCEEEEEECS--SEEEEEETTSCEEEEECEECSSS
T ss_pred CCCeEEEEeCCCeEEEeECCCCcCCCCCCcCCccccCCeEEc-CCCCEEEEEcCc--CeEEEEeCCCeEEEEeCCCCCCC
Confidence 344555566788888886533 11 011111 223566666543 45556678999999985 2221
Q ss_pred CC-c--cCCcceeeeccCCCceEEEEEeCCCCEEEEEECCCeEEEEECCCCe----------------------eeEEec
Q psy3053 698 SH-M--KPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGELIIWSLENHL----------------------MTQQLS 752 (917)
Q Consensus 698 ~~-~--~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~dG~I~iwDl~~~~----------------------~~~~l~ 752 (917)
.. . ...............|..++.. ..+.++-+.+|.|+.|-....- ....+.
T Consensus 160 qlG~~~~~~~~~p~~~~~~~~i~~va~G--~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~p~~v~ 237 (423)
T 3mvd_K 160 NMGLTIDGNKRTPIDLMEGTVCCSIASG--ADHLVILTTAGKVFTVGCAEQGQLGRLSERSISGEGRRGKRDLLRPTQLI 237 (423)
T ss_dssp EEESBTTBCEEEEEESSTTCCEEEEEEC--SSEEEEEETTSCEEEEECCTTSTTSSCCTTTTTSCSTTTTTTTSSCEEEC
T ss_pred CcCcCCCCCCceeeEecCCCcEEEEecC--CCeEEEEecCCeEEEeeCCcCCccCCCcccccccccccccccccCCeEEe
Confidence 00 0 0000111112233456665543 4566666789999999643211 111111
Q ss_pred CCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCC-----------CeEEE-EeecCCceEEEEEeCCCEEEEEeCCCeE
Q psy3053 753 DDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTT-----------GMQVC-NKVFEEKLLCLSWAGEEKVILGGALGMV 820 (917)
Q Consensus 753 ~~h~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~t-----------g~~i~-~~~~~~~i~~l~~s~~~~lv~gs~dG~I 820 (917)
......|..++.... ..++....+|.|..|-... ..... .......|..++.... ..++-..+|.|
T Consensus 238 ~~~~~~v~~i~~g~~-~~~~~~~~~g~v~~wG~n~~gqlg~~~~~~~~~~~p~~~~~~~v~~ia~G~~-ht~alt~~G~v 315 (423)
T 3mvd_K 238 ITRAKPFEAIWATNY-CTFMRESQTQVIWATGLNNFKQLAHETKGKEFALTPIKTELKDIRHIAGGQH-HTVILTTDLKC 315 (423)
T ss_dssp CTTCCCEEEEEEETT-EEEEEETTTCCEEEEEECTTCTTSSCCTTCSEEEEEEEECCCSEEEEEECSS-EEEEEETTCCE
T ss_pred ecCCccEEEEEECCc-EEEEEECCCCeEEEEeCCCCCcCCCCCCCCceeeeeEEcCCCCeEEEEcccC-eEEEEeCCCcE
Confidence 122334555554422 2233335788888886432 11111 1111345666655444 66777889999
Q ss_pred EEEECCCC------------EEEEEEecCCCceEEEeecCCEEEEEeCCCeEEEEECc
Q psy3053 821 YLVDLIQV------------QLLKQVRAHKDAVLSLHFDNCTMLVGCWDSCVVIYDVE 866 (917)
Q Consensus 821 ~vwdl~~~------------~~i~~l~~h~~~V~sis~dg~~Lasgs~DG~I~Iwdl~ 866 (917)
+.|-.... .....+..-...|..++.....-++-..||.|+.|-..
T Consensus 316 ~~wG~n~~GqLG~g~~~~~~~~p~~v~~l~~~v~~ia~G~~hs~alt~~G~v~~wG~n 373 (423)
T 3mvd_K 316 SVVGRPEYGRLGLGDVKDVVEKPTIVKKLTEKIVSVGCGEVCSYAVTIDGKLYSWGSG 373 (423)
T ss_dssp EEEECCGGGTTCSSSCCSCEEEEEECTTCCSCEEEEEEETTEEEEEETTSCEEEEECC
T ss_pred EEEECCCCCCCCCCCccccccCceEeccCCCCEEEEEcCCCeEEEEcCCCCEEEECCC
Confidence 99965321 12222333333788887767776667899999999653
No 379
>3hsa_A Pleckstrin homology domain; YP_926556.1, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE MLY; 1.99A {Shewanella amazonensis SB2B} SCOP: b.55.1.13 PDB: 3dcx_A*
Probab=48.33 E-value=1.3e+02 Score=27.17 Aligned_cols=78 Identities=8% Similarity=0.012 Sum_probs=56.2
Q ss_pred eceEEEEecCeEEEEeCCCCCCc--eEEEEeccccceeeeccccCc--ceEEEEEEecCCCceeEEEecCChhhHHHHHH
Q psy3053 173 NPGRIVLSSTNLYFQPFNNIEPH--KLLKVRLAGIKRIIRRRFLLQ--QVGIEIYFKDLEPVKYLYLTLKTQGARDTLYN 248 (917)
Q Consensus 173 ~~g~~~~~~~~~~f~~~~~~~~~--~~~~~~~~~i~~~~~r~~~~~--~~~~e~~~~~~~~~~~~~~~f~~~~~~~~~~~ 248 (917)
....++.|+.+|.+.--.+...+ -+..+|++.|.++.-..=..- +.-|+|++... ..++=+.|....+-..+++
T Consensus 41 iRD~~iFTnkRLI~vD~QG~TGkK~~~~siPY~sI~~~siETAG~fDlDaElki~isg~--~~pi~~~f~k~~di~~i~k 118 (126)
T 3hsa_A 41 VRDLFVFTSXRLILIDXQGVTGXXVSYHSIPYXAIVHFQVETAGTFDMDAELXLWISGQ--HEPLVXELXRGTDVVGIQX 118 (126)
T ss_dssp SSEEEEEESSEEEEEEEESTTSCEEEEEEEEGGGEEEEEEEEESTTSCEEEEEEEETTC--SSCEEEEECTTSCHHHHHH
T ss_pred cCceEEEccchheEEecCcCcccceEEEEeccceeeEEEEeccccccCCceEEEEEcCC--ceEEEEeccCcccHHHHHH
Confidence 46899999999999643333333 356899999999886654443 45677777654 2457889998888888888
Q ss_pred HHhC
Q psy3053 249 ALLD 252 (917)
Q Consensus 249 ~~~~ 252 (917)
.|..
T Consensus 119 ~La~ 122 (126)
T 3hsa_A 119 TIAR 122 (126)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7753
No 380
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=45.99 E-value=50 Score=40.93 Aligned_cols=38 Identities=16% Similarity=0.106 Sum_probs=32.9
Q ss_pred ceEEEEEeCCCcEEEEEecCCceEEEeccCCceeeeee
Q psy3053 582 AITAVAICGEGISVASVGRDAMLKIHSLKTGRQERSAV 619 (917)
Q Consensus 582 ~Vtsv~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~~~ 619 (917)
.|.+++..++..+++|.+.|+++|+|++.+++++.+..
T Consensus 237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~d 274 (950)
T 4gq2_M 237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 274 (950)
T ss_dssp CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeec
Confidence 56777888888999999999999999999998877654
No 381
>3f5r_A FACT complex subunit POB3; APC7736, FACT complex (SPT16P-POB3P), saccharomyces cerevisi structural genomics, PSI-2; 1.70A {Saccharomyces cerevisiae}
Probab=44.91 E-value=71 Score=31.14 Aligned_cols=79 Identities=11% Similarity=0.051 Sum_probs=58.5
Q ss_pred eEeceEEEEecCeEEEEeC-CCC----CCceEEEEeccccceeeeccccCcceEEEEEEecCCCceeEEEecCChhhHHH
Q psy3053 171 VVNPGRIVLSSTNLYFQPF-NNI----EPHKLLKVRLAGIKRIIRRRFLLQQVGIEIYFKDLEPVKYLYLTLKTQGARDT 245 (917)
Q Consensus 171 ~~~~g~~~~~~~~~~f~~~-~~~----~~~~~~~~~~~~i~~~~~r~~~~~~~~~e~~~~~~~~~~~~~~~f~~~~~~~~ 245 (917)
...+|+|-|+++.|-|.+. ..- ..+++..++-+||..+.+.|.. +.-.|-|+++++ ...-|--|. +++-++
T Consensus 34 s~~~G~lkla~~glgWK~~~~tG~~~~~~~k~~~i~~sdI~~a~W~r~~-rg~~LrI~~K~g--~~~~fdGF~-~~D~~~ 109 (191)
T 3f5r_A 34 SKFSGRFRIADSGLGWKISTSGGSAANQARKPFLLPATELSTVQWSRGC-RGYDLKINTKNQ--GVIQLDGFS-QDDYNL 109 (191)
T ss_dssp CSSCEEEEEETTEEEEEECCSSTTTHHHHCCCEEEEGGGEEEEEEEECS-SSEEEEEEESSS--CEEEEEEEC-GGGHHH
T ss_pred CCcccEEEEcCCceEEeecCCCCccccccCceEEEcHHHcCeEEEEEcc-CCcEEEEEECCC--ceEEecCCC-HHHHHH
Confidence 4579999999999999975 211 0126899999999999999976 889999999987 234455666 445666
Q ss_pred HHHHHhCC
Q psy3053 246 LYNALLDL 253 (917)
Q Consensus 246 ~~~~~~~~ 253 (917)
+-+.+...
T Consensus 110 L~~~fk~~ 117 (191)
T 3f5r_A 110 IKNDFHRR 117 (191)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66665543
No 382
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=44.55 E-value=4.3e+02 Score=32.45 Aligned_cols=39 Identities=15% Similarity=0.150 Sum_probs=33.6
Q ss_pred CceEEEEEeCCCCEEEEEECCCeEEEEECCCCeeeEEec
Q psy3053 714 NRIKCLAISKDNNQLAVGTEAGELIIWSLENHLMTQQLS 752 (917)
Q Consensus 714 ~~V~~l~~spdg~~Lasgs~dG~I~iwDl~~~~~~~~l~ 752 (917)
..+.+++..++..++++-+.|+++++|++.+++++.+..
T Consensus 236 ~~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~d 274 (950)
T 4gq2_M 236 NTIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 274 (950)
T ss_dssp TCEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred ceEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeec
Confidence 356778888888999999999999999999999887653
No 383
>1pls_A Pleckstrin homology domain; phosphorylation; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=44.30 E-value=1e+02 Score=26.46 Aligned_cols=73 Identities=12% Similarity=0.066 Sum_probs=51.3
Q ss_pred EEEEecCeEEEEeCCCCCCceEEEEeccccceee-eccccCcceEEEEEEecCCCceeEEEecCChhhHHHHHHHHhC
Q psy3053 176 RIVLSSTNLYFQPFNNIEPHKLLKVRLAGIKRII-RRRFLLQQVGIEIYFKDLEPVKYLYLTLKTQGARDTLYNALLD 252 (917)
Q Consensus 176 ~~~~~~~~~~f~~~~~~~~~~~~~~~~~~i~~~~-~r~~~~~~~~~e~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~ 252 (917)
-+.|+++.|++--..+ +..+.-.|++..+..+. .....-++.+++|.+.++ +.++|.-.+.++++.=++.|..
T Consensus 25 ~fvL~~~~L~yy~~~~-~~~~~g~i~L~~~~~~~~~~~~~~~~~~F~i~~~~~---r~~~l~a~s~~e~~~Wi~ai~~ 98 (113)
T 1pls_A 25 WVVLLEDGIEFYKKKS-DNSPKGMIPLKGSTLTSPCQDFGKRMFVFKITTTKQ---QDHFFQAAFLEERDAWVRDINK 98 (113)
T ss_dssp EEEEETTEEEEESSTT-CSSCSEEEESSSCCEESSCCSSCCSSSEEEEEETTT---EEEEEECSSHHHHHHHHHHHHH
T ss_pred EEEEECCEEEEEeCCC-CCCcceEEEcCCCEEEEecCCCCCCccEEEEEcCCC---CEEEEECCCHHHHHHHHHHHHH
Confidence 4677788777643222 34566778888877654 233344677999988775 7899999999998887777653
No 384
>1wgq_A FYVE, rhogef and PH domain containing 6; ethanol decreased 4; pleckstrin homoloy domain, signal transduction, structural genomics; NMR {Mus musculus} SCOP: b.55.1.1
Probab=44.23 E-value=92 Score=26.61 Aligned_cols=73 Identities=11% Similarity=0.145 Sum_probs=50.2
Q ss_pred EEEEecCeEEEEeCCCCCCceEEEEeccccceeeeccccCcceEEEEEEecCCCceeEEEecCChhhHHHHHHHHhC
Q psy3053 176 RIVLSSTNLYFQPFNNIEPHKLLKVRLAGIKRIIRRRFLLQQVGIEIYFKDLEPVKYLYLTLKTQGARDTLYNALLD 252 (917)
Q Consensus 176 ~~~~~~~~~~f~~~~~~~~~~~~~~~~~~i~~~~~r~~~~~~~~~e~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~ 252 (917)
-+.|.+..|++-.... +..+.-.|++..+..+..-.-.-++.+++|.+.++ +.++|.-++.++++.=++.|..
T Consensus 28 wfvL~~~~L~yyk~~~-~~~~~~~i~L~~~~~~~~~~~~~~~~~F~i~~~~~---~~~~~~a~s~~e~~~Wi~al~~ 100 (109)
T 1wgq_A 28 WFVIKNKVLYTYAASE-DVAALESQPLLGFTVTLVKDENSESKVFQLLHKGM---VFYVFKADDAHSTQRWIDAFQE 100 (109)
T ss_dssp EEEEETTEEEEESCTT-CSSCSEEEECSSEEEEECCCSSCSSSEEEEEETTE---EEEEEECSSHHHHHHHHHHHHH
T ss_pred EEEEeCCEEEEECCCC-cCccCceEECCCCEEEECCCCCCCCcEEEEEeCCC---eEEEEECCCHHHHHHHHHHHHH
Confidence 4677778887653222 24566778887776655433333567999987665 6789999999998887777653
No 385
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=41.86 E-value=62 Score=38.44 Aligned_cols=38 Identities=11% Similarity=0.163 Sum_probs=32.8
Q ss_pred CceEEEeecCCEEEEEeCCCeEEEEECcCCeEEEEecC
Q psy3053 839 DAVLSLHFDNCTMLVGCWDSCVVIYDVECGRIVTELAG 876 (917)
Q Consensus 839 ~~V~sis~dg~~Lasgs~DG~I~Iwdl~tg~~l~~l~~ 876 (917)
..|.++.++..++++-+.|.++|+|++++++++.+..-
T Consensus 222 ~~Is~~~~~~~fLftL~~Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 222 SVISCKLFHERYLIVLTQNCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp CEEEEEEETTTEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred ceEEEeccCCcEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence 45777788899999999999999999999998877643
No 386
>1fao_A Dual adaptor of phosphotyrosine and 3- phosphoinositides; pleckstrin, inositol tetrakisphosphate signal transduction protein, adaptor protein; HET: 4IP; 1.80A {Homo sapiens} SCOP: b.55.1.1 PDB: 1fb8_A
Probab=39.34 E-value=1.3e+02 Score=26.26 Aligned_cols=71 Identities=15% Similarity=0.081 Sum_probs=50.9
Q ss_pred EEEEecCeEEEEeCCCCCCceEEEEeccccceeeeccccCcceEEEEEEecCCCceeEEEecCChhhHHHHHHHHh
Q psy3053 176 RIVLSSTNLYFQPFNNIEPHKLLKVRLAGIKRIIRRRFLLQQVGIEIYFKDLEPVKYLYLTLKTQGARDTLYNALL 251 (917)
Q Consensus 176 ~~~~~~~~~~f~~~~~~~~~~~~~~~~~~i~~~~~r~~~~~~~~~e~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~ 251 (917)
-+.|+++.|++-...+ +..+.-.|++..+..+..-.-.-++.+++|.+.+ +.++|.-.+.++++.=+..|.
T Consensus 38 ~fvL~~~~L~yy~~~~-~~~~~g~i~L~~~~~v~~~~~~~~~~~F~i~~~~----r~~~l~a~s~~e~~~Wi~al~ 108 (126)
T 1fao_A 38 WFTLHRNELKYFKDQM-SPEPIRILDLTECSAVQFDYSQERVNCFCLVFPF----RTFYLCAKTGVEADEWIKILR 108 (126)
T ss_dssp EEEEETTEEEEESSTT-CSSCSEEEEGGGCCEEEEECSSSSSSEEEEEETT----EEEEEECSSHHHHHHHHHHHH
T ss_pred EEEEECCEEEEeCCCC-CCCceeEEEccceEEEEecccCCCCCEEEEEeCC----cEEEEECCCHHHHHHHHHHHH
Confidence 5677888887753222 3466778899888766554444567799998754 689999999999888777765
No 387
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=39.24 E-value=5.5e+02 Score=30.35 Aligned_cols=230 Identities=11% Similarity=0.030 Sum_probs=112.0
Q ss_pred ecCCCCEEEE-EECC----CeEEEEeCCCCCCCccCCcceeeeccCC-----CceEEEEEeCCCCEEEEEE---------
Q psy3053 672 WDEKRKRLIS-GSWD----CTVRVWNTGASWSHMKPSKSLVSQLDLD-----NRIKCLAISKDNNQLAVGT--------- 732 (917)
Q Consensus 672 ~spd~~~L~S-gs~D----gtI~vWdl~~~~~~~~~~~~~~~~~~h~-----~~V~~l~~spdg~~Lasgs--------- 732 (917)
++|++++++. -|.. ..++++|+.++.-...... ..... .....++|..+ +.+..++
T Consensus 137 ~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~~~~----~~~k~~~~~~~~~~~~~W~d~-~~~~~~~~~~~~~~~~ 211 (711)
T 4hvt_A 137 CFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKNGFE----PITNSGKLLEGKFTYPTWINK-DTIIFNLVLHKNEITS 211 (711)
T ss_dssp CSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTTCSC----CBCTTCCBCCEETCCEEEEET-TEEEECCCCSTTCBCT
T ss_pred cCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCCCcc----cccccccccccccceeeEECC-CEEEEEeCCCCCCcCc
Confidence 6778776554 3333 3799999988731111000 00000 01134477633 3343332
Q ss_pred --CCCeEEEEECCCCe--eeEEecCCCCCCeEEEEEecCCCE-----EEEEeCC---CeEEEEECCC--CeEEEEeecCC
Q psy3053 733 --EAGELIIWSLENHL--MTQQLSDDINASVNGVLFSEDGCR-----VLSCGNN---CMLNVYDLTT--GMQVCNKVFEE 798 (917)
Q Consensus 733 --~dG~I~iwDl~~~~--~~~~l~~~h~~~V~~v~fspdg~~-----L~s~s~D---g~I~iwDl~t--g~~i~~~~~~~ 798 (917)
....|+.|.+.+.. -...+......--.+...+++++. +++.+.+ ..+.+.|... ++. ..+..+.
T Consensus 212 ~~~~~~v~~~~~Gt~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~ 290 (711)
T 4hvt_A 212 SLYPNSLYIWKRGESIEKAKKLFEVPKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKYKNLKL-QKINMPS 290 (711)
T ss_dssp TSSBCEEEEEETTSCGGGCEEEEECCTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSSSSCEE-EECCSCT
T ss_pred CCCCCEEEEEECCCChHHCeEEeccCCCceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCCCCCcc-eEeecCC
Confidence 12458888876642 222232122222334555666662 4444322 4566666543 432 2233333
Q ss_pred ceEEEEEeCCCEEEEE-----------eCCCeEEEEECCCCE-------EEEE-Ee-cCCCceEEEeec-CCEEEEEeCC
Q psy3053 799 KLLCLSWAGEEKVILG-----------GALGMVYLVDLIQVQ-------LLKQ-VR-AHKDAVLSLHFD-NCTMLVGCWD 857 (917)
Q Consensus 799 ~i~~l~~s~~~~lv~g-----------s~dG~I~vwdl~~~~-------~i~~-l~-~h~~~V~sis~d-g~~Lasgs~D 857 (917)
...-+... ++.+++. ...+.|...++.++. .... +. .....+..+.+. +..+++...+
T Consensus 291 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~ 369 (711)
T 4hvt_A 291 DATLQGSF-KEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTANEVFNFISTTKDRVFLATYDN 369 (711)
T ss_dssp TCEEEEEE-TTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCTTEEEEEEEECSSCEEEEEEET
T ss_pred cceEeeeE-CCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCCCCCeEEEEEEECCEEEEEEEEC
Confidence 32212222 3344432 246778899887631 1222 22 223455566553 4566677777
Q ss_pred Ce--EEEEECcCCeE-EEE-ecCC-CCCEEEEEEcCCCCE-EEEEe---CCCcEEEEecC
Q psy3053 858 SC--VVIYDVECGRI-VTE-LAGH-EDAISCVAWDEKRKR-LISGN---LVGAPKLYATE 908 (917)
Q Consensus 858 G~--I~Iwdl~tg~~-l~~-l~~h-~~~V~slafSpdg~~-LaSgs---~DG~V~IWdl~ 908 (917)
|. +.++++.+++. ... +.-. .+.+.....++++.. +++.+ .-+.+..+++.
T Consensus 370 ~~~~l~~~~~~~g~~~~~~~i~lp~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~ 429 (711)
T 4hvt_A 370 VVAKVVTFTLENEQWTKPVVLKLPYQNAIFGMSSYEEEEEALITIENSIVPPTIYLWVKT 429 (711)
T ss_dssp TEEEEEEECEETTEECCCEEECCCSTTCEEEEECCTTCSCEEEEEECSSSCCEEEEECTT
T ss_pred CEEEEEEEECCCCceEEEeccCCCCCeEEEEEeecCcCCEEEEEEecCCCCCEEEEEeCC
Confidence 64 66777766652 222 2211 345777777777654 44433 33567777765
No 388
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=38.28 E-value=3.6e+02 Score=28.04 Aligned_cols=160 Identities=9% Similarity=0.074 Sum_probs=89.4
Q ss_pred eEEEEEeCCCcEEEEEecCCceEEEec---cC------Cceee-eee-ccccceEEEEEe---CCCCEEEEEecccEEEE
Q psy3053 583 ITAVAICGEGISVASVGRDAMLKIHSL---KT------GRQER-SAV-LSSMTLSSLCIL---PDNCTMLVGCWDSCVVI 648 (917)
Q Consensus 583 Vtsv~fSpdg~~Lasgs~Dg~I~IWd~---~t------~~~~~-~~~-~~~~~V~sl~~s---pd~~~Lasgs~Dg~I~I 648 (917)
+..+........|+..+..|.+.-... .. |..+. .+. ..+..|.++... .++..++..+.+|.++-
T Consensus 44 l~~~~~~~~~~~ll~fT~~G~~~~~~~~elp~~~~~a~G~~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~Kr 123 (307)
T 1zi0_A 44 IDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKK 123 (307)
T ss_dssp EEEEEEEETTCEEEEEETTSEEEEEEGGGSCCCCSSSCCEEGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEE
T ss_pred EEEEEEECCCCEEEEEECCCEEEEEEhhHCcCCCCCCCCeEhhhccCCCCCCEEEEEEEeccCCCCcEEEEEeCCCeEEE
Confidence 333434444455666667776544443 22 22111 111 123345555442 35667899999999999
Q ss_pred EEecc-------CeeeEEeccCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcc-eeeeccCCCceEEEE
Q psy3053 649 YDVEC-------GRIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKS-LVSQLDLDNRIKCLA 720 (917)
Q Consensus 649 wdl~t-------g~~i~~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~-~~~~~~h~~~V~~l~ 720 (917)
..+.. |.....+..+ +.+-.+....+...++..+.+|.+..++...-....+...- .......+..|.++.
T Consensus 124 t~l~e~~~~~r~G~~~i~l~~~-d~lv~~~~~~~~~~i~l~T~~G~~irf~~~~v~~~gr~a~Gv~~i~L~~~d~Vv~~~ 202 (307)
T 1zi0_A 124 TVLTEFNRLRTAGKVAIKLVDG-DELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLGEGDKVVSLI 202 (307)
T ss_dssp EEGGGGTTCCTTCEESSCCCTT-CCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCTTCCEEEEE
T ss_pred EEHHHhhccccCCeEEEEECCC-CEEEEEEEeCCCCEEEEECCCCcEEEEEHHHcCccCCCCCCeEeEEeCCCCEEEEEE
Confidence 88752 2222233334 55555555555567888889998888876432111111111 111233456677776
Q ss_pred EeCCCCEEEEEECCCeEEEEECC
Q psy3053 721 ISKDNNQLAVGTEAGELIIWSLE 743 (917)
Q Consensus 721 ~spdg~~Lasgs~dG~I~iwDl~ 743 (917)
...++..+++.+..|.++-.++.
T Consensus 203 ~~~~~~~ll~~T~~G~~Kr~~~~ 225 (307)
T 1zi0_A 203 VPRGDGAILTATQNGYGKRTAVA 225 (307)
T ss_dssp CCCSSCEEEEEETTSEEEEECGG
T ss_pred EecCCCEEEEEEcCCceEEEEHH
Confidence 65566778888999998888764
No 389
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae}
Probab=38.07 E-value=4.5e+02 Score=29.05 Aligned_cols=187 Identities=11% Similarity=0.016 Sum_probs=102.5
Q ss_pred CceEEEEEeCCCCEEEEEECCCeEEEEECC---CCe------------eeEEecCCCCCCeEEEEEecCCCEEEEEeCCC
Q psy3053 714 NRIKCLAISKDNNQLAVGTEAGELIIWSLE---NHL------------MTQQLSDDINASVNGVLFSEDGCRVLSCGNNC 778 (917)
Q Consensus 714 ~~V~~l~~spdg~~Lasgs~dG~I~iwDl~---~~~------------~~~~l~~~h~~~V~~v~fspdg~~L~s~s~Dg 778 (917)
..|..++.. ....++-+.+|.|+.|-.. .++ ....+.......|..|+.. ....++...+|
T Consensus 148 ~~i~~va~G--~~hs~alt~~G~vy~wG~n~~~~GqLG~~~~~~~~~~~P~~v~~l~~~~i~~va~G--~~hs~alt~~G 223 (473)
T 3of7_A 148 HKVVQLAAT--DNMSCALFSNGEVYAWGTFRCNEGILGFYQDKIKIQKTPWKVPTFSKYNIVQLAPG--KDHILFLDEEG 223 (473)
T ss_dssp CCEEEEEEC--SSEEEEEETTSCEEEEECEEETTEEEESBTTTBSCEEEEEECCCCCSSCEEEEEEC--SSEEEEEETTS
T ss_pred CcEEEEEcc--CCEEEEEeCCCeEEEeeCCcCCCCccCCCCCCCccccCcEEccccCCCCEEEEEec--CCeEEEEeCCC
Confidence 455555544 4455666788999988741 111 1111211122346666554 34666667899
Q ss_pred eEEEEECCCCeEE--------------EEeecCCceEEEEEeCCCEEEEEeCCCeEEEEECCCC------------EEE-
Q psy3053 779 MLNVYDLTTGMQV--------------CNKVFEEKLLCLSWAGEEKVILGGALGMVYLVDLIQV------------QLL- 831 (917)
Q Consensus 779 ~I~iwDl~tg~~i--------------~~~~~~~~i~~l~~s~~~~lv~gs~dG~I~vwdl~~~------------~~i- 831 (917)
.|..|-....-.+ ........|..++.... ..++-+.+|.|+.|-.... ...
T Consensus 224 ~v~~wG~n~~GqLG~~~~~~~~~~~~~p~~~~~~~v~~Ia~G~~-hs~alt~~G~v~~wG~n~~GqlG~~~~~~~~~~~~ 302 (473)
T 3of7_A 224 MVFAWGNGQQNQLGRKVMERFRLKTLDPRPFGLRHVKYIASGEN-HCFALTKDNKLVSWGLNQFGQCGVSEDVEDGALVT 302 (473)
T ss_dssp CEEEEECCTTSTTSSCCCGGGTTTTCSCEECSCCSEEEEEECSS-EEEEEETTSCEEEEEECTTSTTCCCSCCCTTCEEE
T ss_pred eEEEEeCCCCCCCCCCccccccccccCceecCCcceEEEecCCC-eEEEEecCCCEEEeCCCCCCCcCCCCcccCCceee
Confidence 9999965321100 00001134566655444 6777788999999965321 111
Q ss_pred --EEEec-CCCceEEEeecCCEEEEEeCCCeEEEEECcC-C-------------------eE-----EEEecCCCCCEEE
Q psy3053 832 --KQVRA-HKDAVLSLHFDNCTMLVGCWDSCVVIYDVEC-G-------------------RI-----VTELAGHEDAISC 883 (917)
Q Consensus 832 --~~l~~-h~~~V~sis~dg~~Lasgs~DG~I~Iwdl~t-g-------------------~~-----l~~l~~h~~~V~s 883 (917)
..+.. ....|..++.....-++-..||.|+.|-... + .. ...+.+ ...|..
T Consensus 303 ~P~~v~~~~~~~i~~ia~G~~hs~~lt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~~~~P~~v~~-~~~v~~ 381 (473)
T 3of7_A 303 KPKRLALPDNVVIRSIAAGEHHSLILSQDGDLYSCGRLDMFEVGIPKDNLPEYTYKDVHGKARAVPLPTKLNN-VPKFKS 381 (473)
T ss_dssp EEEECCCCTTCCEEEEEECSSEEEEEETTSCEEEEEECTTCTTCCCGGGCCTTCEECTTSCEEEEEEEEECCS-SCCEEE
T ss_pred ccccccccCCccEEEEEeCCCeEEEEeCCCeEEEEECCCCCccCCCccccccccccccCCceeeeccCcccCC-CCceEE
Confidence 11111 2346778877777777778899999996421 1 11 011111 125666
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEecC
Q psy3053 884 VAWDEKRKRLISGNLVGAPKLYATE 908 (917)
Q Consensus 884 lafSpdg~~LaSgs~DG~V~IWdl~ 908 (917)
++... ...+....||.|+.|-.+
T Consensus 382 Ia~G~--~hs~al~~~G~vy~wG~n 404 (473)
T 3of7_A 382 VAAGS--HHSVAVAQNGIAYSWGFG 404 (473)
T ss_dssp EEECS--SEEEEEETTSCEEEEECC
T ss_pred EEeCC--CeEEEEeCCCcEEEeeCC
Confidence 66543 345555789999999764
No 390
>3cxb_B Pleckstrin homology domain-containing family M member 2; SIFA, SKIP, complex, virulence, cytoplasm, membrane, polymorphism, signaling protein; 2.60A {Homo sapiens} PDB: 3hw2_B
Probab=36.42 E-value=1.4e+02 Score=25.83 Aligned_cols=73 Identities=21% Similarity=0.204 Sum_probs=50.2
Q ss_pred eEEEEecCeEEEEeCCCCCCceEEEEeccc--cceeeeccccCcceEEEEEEecCCCceeEEEecCChhhHHHHHHHHh
Q psy3053 175 GRIVLSSTNLYFQPFNNIEPHKLLKVRLAG--IKRIIRRRFLLQQVGIEIYFKDLEPVKYLYLTLKTQGARDTLYNALL 251 (917)
Q Consensus 175 g~~~~~~~~~~f~~~~~~~~~~~~~~~~~~--i~~~~~r~~~~~~~~~e~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~ 251 (917)
--+.|.++.|||.-... +..|...|++.. +..+....+.-|+.++||.+.++ +.++|.=+++++++.=++.|.
T Consensus 23 rwfvL~~~~L~~yk~~~-~~~p~~~i~l~~~~~~~~~~~~~~~r~~~F~l~~~~~---~~y~f~A~s~ee~~~Wi~ai~ 97 (112)
T 3cxb_B 23 CFVVLSNGILYQYPDRT-DVIPLLSVNMGGEQCGGCRRANTTDRPHAFQVILSDR---PCLELSAESEAEMAEWMQHLC 97 (112)
T ss_dssp EEEEEETTEEEEESSSS-CCSCSEEEETTC-CEEEEEECCCSSCTTEEEEEETTS---CCEEEECSSHHHHHHHHHHHH
T ss_pred EEEEEECCEEEEECCCC-CCCccceEEecCCEEEeeeccCCCCCCeEEEEEcCCC---CEEEEEcCCHHHHHHHHHHHH
Confidence 35677888888864332 234555666653 33234445666888999998876 688889899988887777765
No 391
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=34.46 E-value=4.3e+02 Score=27.77 Aligned_cols=162 Identities=10% Similarity=0.015 Sum_probs=89.2
Q ss_pred ceEEEEEeCCCcEEEEEecCCceEEEec---cC------Cceeee-eec-cccceEEEEEeCC---CCEEEEEecccEEE
Q psy3053 582 AITAVAICGEGISVASVGRDAMLKIHSL---KT------GRQERS-AVL-SSMTLSSLCILPD---NCTMLVGCWDSCVV 647 (917)
Q Consensus 582 ~Vtsv~fSpdg~~Lasgs~Dg~I~IWd~---~t------~~~~~~-~~~-~~~~V~sl~~spd---~~~Lasgs~Dg~I~ 647 (917)
.+..+........|+..+..|.+.-... .. |..+.. +.. .+..|.++...++ +.+++.++.+|.++
T Consensus 40 ~l~~~~~~~t~d~ll~fT~~Gr~~~~~~~elp~~~r~a~G~~i~~~i~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~iK 119 (323)
T 1wp5_A 40 RLLAMLEMNTKDVLLLFTNKGNYLYCPVHELPDIRWKDLGQHIANIIPIDRDEEIIKAIPINDFELNGYFLFVTRNGMVK 119 (323)
T ss_dssp CEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCTTSCCEEGGGTSCCCTTCCEEEEEEESCTTSSCEEEEEETTSEEE
T ss_pred EEEEEEEECCCCEEEEEECCCEEEEEEHHHCcCCCCCCCCcChhhccCCCCCCEEEEEEEecccCCCceEEEEeCCCeEE
Confidence 3334444444555666667776544433 22 221111 111 2334555443332 56799999999999
Q ss_pred EEEecc--------CeeeEEeccCCCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCC-cceeeeccCCCceEE
Q psy3053 648 IYDVEC--------GRIVTELAGHEDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPS-KSLVSQLDLDNRIKC 718 (917)
Q Consensus 648 Iwdl~t--------g~~i~~l~~H~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~-~~~~~~~~h~~~V~~ 718 (917)
-..+.. |.....+... +.+-.+........++..+.+|.+..+....-....+.. .........++.|.+
T Consensus 120 rt~l~e~~~~~r~~G~~ai~l~e~-d~lv~~~~~~~~~~i~l~T~~G~~irf~~~ev~~~gR~a~GV~~i~L~~~d~Vv~ 198 (323)
T 1wp5_A 120 KTELKHYKAQRYSKPLTGINLKND-DQVVDVHLTDGMNELFLVTHNGYALWFDESEVSIVGVRAAGVKGMNLKEGDYIVS 198 (323)
T ss_dssp EEEGGGGCCSCCSSCEECSCCCTT-CCEEEEEEECSCSEEEEEETTSEEEEEEGGGSCBCCSSCCCEECCCCCTTCCEEE
T ss_pred EeEHHHhhhccccCceEEEEeCCC-CEEEEEEEeCCCCEEEEEeCCCcEEEEEHHHCcccCCCCcCEEEEEeCCCCEEEE
Confidence 988752 2222223322 555555555556678888999999888764321111111 111112234556777
Q ss_pred EEEeCCCC-EEEEEECCCeEEEEECCC
Q psy3053 719 LAISKDNN-QLAVGTEAGELIIWSLEN 744 (917)
Q Consensus 719 l~~spdg~-~Lasgs~dG~I~iwDl~~ 744 (917)
+..-+++. .+++.+..|..+..++..
T Consensus 199 ~~~~~~~~~~ll~vt~~G~gKr~~~~e 225 (323)
T 1wp5_A 199 GQLITSKDESIVVATQRGAVKKMKLTE 225 (323)
T ss_dssp EEEECCTTCEEEEEETTSEEEEEEGGG
T ss_pred EEEEcCCCcEEEEEECCCceEEEEHHH
Confidence 76555555 788889999888877643
No 392
>1u5d_A SKAP55, SRC kinase-associated phosphoprotein of 55 kDa; PH domain, signaling protein; 1.70A {Homo sapiens} SCOP: b.55.1.1
Probab=33.99 E-value=1.3e+02 Score=25.19 Aligned_cols=72 Identities=13% Similarity=0.099 Sum_probs=48.3
Q ss_pred EEEEecCeEEEEeCCCCCCceEEEEeccccceeee---ccccCcceEEEEEEecCCCceeEEEecCChhhHHHHHHHHh
Q psy3053 176 RIVLSSTNLYFQPFNNIEPHKLLKVRLAGIKRIIR---RRFLLQQVGIEIYFKDLEPVKYLYLTLKTQGARDTLYNALL 251 (917)
Q Consensus 176 ~~~~~~~~~~f~~~~~~~~~~~~~~~~~~i~~~~~---r~~~~~~~~~e~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~ 251 (917)
-+.|++..|++-.... +..|.-.|++.++..+.. +.-.-++.+++|.+.++ +.++|.-.+.++++.=+..|.
T Consensus 27 ~fvL~~~~L~yy~~~~-~~~~~g~i~L~~~~v~~~~~~~~~~~~~~~F~i~~~~~---r~~~l~a~s~~e~~~Wi~ai~ 101 (108)
T 1u5d_A 27 WCVVSRGLFYYYANEK-SKQPKGTFLIKGYSVRMAPHLRRDSKKESCFELTSQDR---RTYEFTATSPAEARDWVDQIS 101 (108)
T ss_dssp EEEEETTEEEEESSTT-CSSCSEEEECTTCEEEECGGGCSSGGGGGEEEEECSSS---CCEEEECSSHHHHHHHHHHHH
T ss_pred EEEEeCCEEEEecCCC-CCCCCEEEEecceEEEeCCccccccCCcceEEEEcCCC---cEEEEECCCHHHHHHHHHHHH
Confidence 4667777777653322 245666788877774332 22334567999998765 688999999988887666664
No 393
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=33.18 E-value=1.2e+02 Score=38.33 Aligned_cols=39 Identities=18% Similarity=0.165 Sum_probs=32.8
Q ss_pred CeEEEEEecCCCEEEEEeCCCeEEEEECCCCeEEEEeec
Q psy3053 758 SVNGVLFSEDGCRVLSCGNNCMLNVYDLTTGMQVCNKVF 796 (917)
Q Consensus 758 ~V~~v~fspdg~~L~s~s~Dg~I~iwDl~tg~~i~~~~~ 796 (917)
.+.+++..++..++++-+.|+++++|++.+++++.....
T Consensus 239 ~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~DL 277 (1139)
T 4fhn_B 239 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIEL 277 (1139)
T ss_dssp CBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEEEC
T ss_pred eeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEeech
Confidence 455666777888999999999999999999999887654
No 394
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=32.07 E-value=99 Score=36.73 Aligned_cols=38 Identities=13% Similarity=0.088 Sum_probs=29.9
Q ss_pred cceEEEEEeCCCcEEEEEecCCceEEEeccCCceeeeeec
Q psy3053 581 EAITAVAICGEGISVASVGRDAMLKIHSLKTGRQERSAVL 620 (917)
Q Consensus 581 ~~Vtsv~fSpdg~~Lasgs~Dg~I~IWd~~t~~~~~~~~~ 620 (917)
..|.++.+ +..++++.+.|.++|+|++.+++++.....
T Consensus 222 ~~Is~~~~--~~~fLftL~~Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 222 SVISCKLF--HERYLIVLTQNCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp CEEEEEEE--TTTEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred ceEEEecc--CCcEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence 34555544 467999999999999999999988766554
No 395
>1zvt_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 1.70A {Escherichia coli}
Probab=31.44 E-value=4.2e+02 Score=26.76 Aligned_cols=144 Identities=12% Similarity=0.017 Sum_probs=81.7
Q ss_pred CEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEeCCCCEEEEEECCCeEEEEECC---C----CeeeE
Q psy3053 677 KRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGELIIWSLE---N----HLMTQ 749 (917)
Q Consensus 677 ~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~dG~I~iwDl~---~----~~~~~ 749 (917)
...++.+.+|.|+--....-. .... ....++.+..+......+.++..+..|.++-.... . |..+.
T Consensus 3 ~v~v~lT~~G~iKr~~~~~~~------~~~~-~lke~D~l~~~~~~~t~~~ll~~T~~Gr~~~~~~~elp~~r~~G~~i~ 75 (256)
T 1zvt_A 3 PVTIVLSQMGWVRSAKGHDID------APGL-NYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLT 75 (256)
T ss_dssp EEEEEEETTSEEEEEESSCCC------STTS-CCCTTCCEEEEEEEETTSCEEEEETTSEEEEECGGGSCCSSSCCEEGG
T ss_pred CEEEEEeCCCEEEEeeCCcCC------ceec-cCCCCCEEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCCCcCCCCeEee
Confidence 456777888888766543210 0011 12234455555555555667777888987766442 1 22111
Q ss_pred -EecCCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCC-------CeEEEEeecCCceEEEEE--eCCCEEEEEeCCCe
Q psy3053 750 -QLSDDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTT-------GMQVCNKVFEEKLLCLSW--AGEEKVILGGALGM 819 (917)
Q Consensus 750 -~l~~~h~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~t-------g~~i~~~~~~~~i~~l~~--s~~~~lv~gs~dG~ 819 (917)
.+.-.....|.++....++..++.++..|.++...+.. |.....+.-...+..+.. +++..++..+.+|.
T Consensus 76 ~~i~L~~~e~Iv~~~~~~~~~~lll~T~~G~~Kr~~~~e~~~~~r~G~~~i~L~~~d~lv~~~~~~~~~~~i~l~T~~G~ 155 (256)
T 1zvt_A 76 GKLTLPPGATVDHMLMESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQAGR 155 (256)
T ss_dssp GTCCCCTTCCEEEEECCCTTCEEEEEBTTSEEEEEEGGGGCCCSTTCEECBCCCTTCCBCCCEECCCTTCEEEEEETTSE
T ss_pred eeecCCCCCEEEEEEEeCCCCEEEEEeCCCeEEEeEHHHhcccCcCceEEEEECCCCEEEEEEEecCCCCEEEEEcCCCe
Confidence 11112345677764434567788899999999887632 222222222334433333 35567889999999
Q ss_pred EEEEECCC
Q psy3053 820 VYLVDLIQ 827 (917)
Q Consensus 820 I~vwdl~~ 827 (917)
+..++...
T Consensus 156 ~lrf~~~e 163 (256)
T 1zvt_A 156 MLMFPVSD 163 (256)
T ss_dssp EEEEEGGG
T ss_pred EEEEEHHH
Confidence 88888754
No 396
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=31.00 E-value=99 Score=35.93 Aligned_cols=60 Identities=13% Similarity=0.160 Sum_probs=44.5
Q ss_pred ceEEEEEeCCCCEEEEEECC------------CeEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEE
Q psy3053 715 RIKCLAISKDNNQLAVGTEA------------GELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSC 774 (917)
Q Consensus 715 ~V~~l~~spdg~~Lasgs~d------------G~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~ 774 (917)
..--|+|++.|+++++-..+ ..+.+.+..+++..+-+..+....++.++|+||++.|.+.
T Consensus 477 ~PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp CEEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred CCcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEEEEE
Confidence 35678999999966654332 2466667777877776665677899999999999887764
No 397
>2p0d_A RHO GTPase-activating protein 9; protein-phosphoinositide complex, pleckstrin homology domain, ligand binding protein; HET: I3P; 1.81A {Homo sapiens} PDB: 2p0f_A 2p0h_A*
Probab=30.78 E-value=1.5e+02 Score=26.40 Aligned_cols=73 Identities=16% Similarity=0.059 Sum_probs=47.7
Q ss_pred EEEEecCeEEEEeCCC----------CCCceEEEEeccccceeeeccccCcceEEEEEEecCCCceeEEEecCChhhHHH
Q psy3053 176 RIVLSSTNLYFQPFNN----------IEPHKLLKVRLAGIKRIIRRRFLLQQVGIEIYFKDLEPVKYLYLTLKTQGARDT 245 (917)
Q Consensus 176 ~~~~~~~~~~f~~~~~----------~~~~~~~~~~~~~i~~~~~r~~~~~~~~~e~~~~~~~~~~~~~~~f~~~~~~~~ 245 (917)
-+.|.++.|+|.-... .+..|.-.|+|....-..-..+.-++..++|.+.++ ..++|.=++..+++.
T Consensus 38 wfvL~~~~L~yykd~~~~~~~~~~~~~~~~p~g~I~L~~~~v~~~~~~~kr~~~F~l~t~~~---~~yl~qA~s~~e~~~ 114 (129)
T 2p0d_A 38 WVVLTGNSLVFYREPPPTAPSSGWGPAGSRPESSVDLRGAALAHGRHLSSRRNVLHIRTIPG---HEFLLQSDHETELRA 114 (129)
T ss_dssp EEEEESSEEEEESCC--------------CCSEEEECTTCEEEECTTSCSSSSEEEEECTTS---CEEEEECSCHHHHHH
T ss_pred EEEEeCCEEEEEcCcccccccccccccCCCCccEEEeCCcEEEECCCCCCCCcEEEEEcCCC---CEEEEECCCHHHHHH
Confidence 4677888888753221 123555667776654332334455678999998776 678888888888887
Q ss_pred HHHHHh
Q psy3053 246 LYNALL 251 (917)
Q Consensus 246 ~~~~~~ 251 (917)
=++.|.
T Consensus 115 Wi~aI~ 120 (129)
T 2p0d_A 115 WHRALR 120 (129)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 777664
No 398
>1zvt_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 1.70A {Escherichia coli}
Probab=30.66 E-value=4.4e+02 Score=26.66 Aligned_cols=147 Identities=10% Similarity=0.049 Sum_probs=77.8
Q ss_pred EEEEecCCceEEEeccCCce-eeeeeccccceEEEEEeCCCCEEEEEecccEEEEEEecc-------CeeeE---EeccC
Q psy3053 595 VASVGRDAMLKIHSLKTGRQ-ERSAVLSSMTLSSLCILPDNCTMLVGCWDSCVVIYDVEC-------GRIVT---ELAGH 663 (917)
Q Consensus 595 Lasgs~Dg~I~IWd~~t~~~-~~~~~~~~~~V~sl~~spd~~~Lasgs~Dg~I~Iwdl~t-------g~~i~---~l~~H 663 (917)
+++.+.+|.|+--....... ...+. ....+..+........++..+..|.++-..... |..+. .+. .
T Consensus 5 ~v~lT~~G~iKr~~~~~~~~~~~~lk-e~D~l~~~~~~~t~~~ll~~T~~Gr~~~~~~~elp~~r~~G~~i~~~i~L~-~ 82 (256)
T 1zvt_A 5 TIVLSQMGWVRSAKGHDIDAPGLNYK-AGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLP-P 82 (256)
T ss_dssp EEEEETTSEEEEEESSCCCSTTSCCC-TTCCEEEEEEEETTSCEEEEETTSEEEEECGGGSCCSSSCCEEGGGTCCCC-T
T ss_pred EEEEeCCCEEEEeeCCcCCceeccCC-CCCEEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCCCcCCCCeEeeeeecCC-C
Confidence 44556666665444322110 00112 223344444444455666677788766554422 22111 122 2
Q ss_pred CCceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEe-CCCCEEEEEECCCeEEEEEC
Q psy3053 664 EDAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAIS-KDNNQLAVGTEAGELIIWSL 742 (917)
Q Consensus 664 ~~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~s-pdg~~Lasgs~dG~I~iwDl 742 (917)
.+.|.++....++.+|+.++..|.++...+..-............. ...+.+..+... .++..++..+.+|.+..+..
T Consensus 83 ~e~Iv~~~~~~~~~~lll~T~~G~~Kr~~~~e~~~~~r~G~~~i~L-~~~d~lv~~~~~~~~~~~i~l~T~~G~~lrf~~ 161 (256)
T 1zvt_A 83 GATVDHMLMESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITL-PENAHVMPPVVIEDASDMLLAITQAGRMLMFPV 161 (256)
T ss_dssp TCCEEEEECCCTTCEEEEEBTTSEEEEEEGGGGCCCSTTCEECBCC-CTTCCBCCCEECCCTTCEEEEEETTSEEEEEEG
T ss_pred CCEEEEEEEeCCCCEEEEEeCCCeEEEeEHHHhcccCcCceEEEEE-CCCCEEEEEEEecCCCCEEEEEcCCCeEEEEEH
Confidence 3456666443456778899999999999875432111111122222 223455555555 35567888999999998887
Q ss_pred CC
Q psy3053 743 EN 744 (917)
Q Consensus 743 ~~ 744 (917)
..
T Consensus 162 ~e 163 (256)
T 1zvt_A 162 SD 163 (256)
T ss_dssp GG
T ss_pred HH
Confidence 53
No 399
>2yry_A Pleckstrin homology domain-containing family A member 6; PH domain, PEPP-3, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=30.52 E-value=1.7e+02 Score=25.25 Aligned_cols=72 Identities=10% Similarity=0.162 Sum_probs=47.8
Q ss_pred EEEEecCeEEEEeCCCCCCceEEEEeccccc--eeeeccccCcceEEEEEEecCCCceeEEEecCChhhHHHHHHHHh
Q psy3053 176 RIVLSSTNLYFQPFNNIEPHKLLKVRLAGIK--RIIRRRFLLQQVGIEIYFKDLEPVKYLYLTLKTQGARDTLYNALL 251 (917)
Q Consensus 176 ~~~~~~~~~~f~~~~~~~~~~~~~~~~~~i~--~~~~r~~~~~~~~~e~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~ 251 (917)
-+.|++..|++-...+ +..+.-.|++.++. .+-.....-++.+++|...++ +.++|.-.+.++++.=++.|.
T Consensus 43 ~fvL~~~~L~yy~~~~-~~~~~g~i~L~~~~v~~~~~~~~~~~~~~F~i~~~~~---r~~~l~a~s~~e~~~Wi~al~ 116 (122)
T 2yry_A 43 WFVLVDRCLFYYKDEK-EESILGSIPLLSFRVAAVQPSDNISRKHTFKAEHAGV---RTYFFSAESPEEQEAWIQAMG 116 (122)
T ss_dssp EEEEETTEEEEESSTT-CCSCCEEEESTTCCCEECCTTCSCSSSSEEEEECSSS---CEEEEECSSHHHHHHHHHHHH
T ss_pred EEEEeCCEEEEECCCC-CCCcccEEEcCCCEEEEcCccccCCcccEEEEecCCC---cEEEEEcCCHHHHHHHHHHHH
Confidence 4677888887753322 24566677877654 222223344577999976655 689999999988887777664
No 400
>2d9y_A Pleckstrin homology domain-containing protein family A member 6; PH domain, PEPP-3, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=28.58 E-value=2e+02 Score=24.60 Aligned_cols=74 Identities=9% Similarity=0.165 Sum_probs=48.7
Q ss_pred EEEEecCeEEEEeCCCCCCceEEEEeccccc--eeeeccccCcceEEEEEEecCCCceeEEEecCChhhHHHHHHHHhCC
Q psy3053 176 RIVLSSTNLYFQPFNNIEPHKLLKVRLAGIK--RIIRRRFLLQQVGIEIYFKDLEPVKYLYLTLKTQGARDTLYNALLDL 253 (917)
Q Consensus 176 ~~~~~~~~~~f~~~~~~~~~~~~~~~~~~i~--~~~~r~~~~~~~~~e~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~ 253 (917)
-+.|++..|++-...+ +..+.-.|++.++. .+-.....-++.+++|...++ +.++|.-.+.++++.=++.|...
T Consensus 32 ~fvL~~~~L~yy~~~~-~~~~~g~i~L~~~~v~~~~~~~~~~~~~~F~i~~~~~---r~~~l~a~s~~e~~~Wi~al~~~ 107 (117)
T 2d9y_A 32 WFVLVDRCLFYYKDEK-EESILGSIPLLSFRVAAVQPSDNISRKHTFKAEHAGV---RTYFFSAESPEEQEAWIQAMGEA 107 (117)
T ss_dssp EEEEETTEEEEESSTT-CCSCCEEEECSSCEEEECCTTTTCCCSSEEEEECSSS---CEEEEECSSHHHHHHHHHHHHHT
T ss_pred EEEECCCEEEEECCCC-CCCcCCEEEeCCeEEEEcCccccCCCccEEEEEcCCC---cEEEEEcCCHHHHHHHHHHHHHH
Confidence 4667788877653222 24556677777654 222222344567899976655 68999999999998888877643
No 401
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=28.55 E-value=2.9e+02 Score=34.77 Aligned_cols=38 Identities=13% Similarity=0.121 Sum_probs=32.2
Q ss_pred ceEEEEEeCCCCEEEEEECCCeEEEEECCCCeeeEEec
Q psy3053 715 RIKCLAISKDNNQLAVGTEAGELIIWSLENHLMTQQLS 752 (917)
Q Consensus 715 ~V~~l~~spdg~~Lasgs~dG~I~iwDl~~~~~~~~l~ 752 (917)
.+.+++..++..++++-+.|+++++|++.+++++.+..
T Consensus 239 ~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~D 276 (1139)
T 4fhn_B 239 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 276 (1139)
T ss_dssp CBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEEE
T ss_pred eeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEeec
Confidence 45566777888999999999999999999999887753
No 402
>2hth_B Vacuolar protein sorting protein 36; GLUE domain, PH domain, viral budding, ubiquitin complex, protein transport; 2.70A {Homo sapiens} SCOP: b.55.1.12 PDB: 2dx5_A
Probab=27.83 E-value=1e+02 Score=28.52 Aligned_cols=62 Identities=18% Similarity=0.129 Sum_probs=41.2
Q ss_pred cCCCceeeEE-EeEEEEEcCCCcccccccCCeEEeeeeeeEEccCCCCCCceeecCccccccCCCC
Q psy3053 20 LEPGEFYFDD-LSVVLILTNKKNEEEERRPGRLKLCSKSLVFDPKNLALPLIKIPLKECTSLSKFE 84 (917)
Q Consensus 20 l~~~e~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~s~~f~~~~~~~~~~~~~~~~~~~~~~~~ 84 (917)
|.+||..+-. -.|.++....+ ....+|+|.|-|.-|||..++-..-=+-|||+.+..++...
T Consensus 13 L~~~E~il~~~~~V~Ly~g~~k---~~~k~G~l~LTshRli~~d~~~~~~s~~lpl~~v~~~e~~~ 75 (140)
T 2hth_B 13 LEINETLVIQQRGVRIYDGEEK---IKFDAGTLLLSTHRLIWRDQKNHECCMAILLSQIVFIEEQA 75 (140)
T ss_dssp CCTTCCEEEEEEEEEEEETTCS---SCCCCEEEEEESSEEEEEETTCCSCCEEEEGGGEEEEEEEC
T ss_pred cCCCceEEEEcCCEEEecCCCC---CCCcCCEEEEecCEEEEecCCCCceEEEEEhHHeeeeeeec
Confidence 4556554433 34444543322 35678999999999999766544456789999988876543
No 403
>1eaz_A Tandem PH domain containing protein-1; lipid-binding protein, lipid degradation, phosphatidylinositol (3, 4)-bisphosphate, signalling; HET: CIT; 1.40A {Homo sapiens} SCOP: b.55.1.1
Probab=26.77 E-value=1.8e+02 Score=25.28 Aligned_cols=72 Identities=11% Similarity=0.173 Sum_probs=49.3
Q ss_pred EEEEecCeEEEEeCCCCCCceEEEEeccccceeee---ccccCcceEEEEEEecCCCceeEEEecCChhhHHHHHHHHhC
Q psy3053 176 RIVLSSTNLYFQPFNNIEPHKLLKVRLAGIKRIIR---RRFLLQQVGIEIYFKDLEPVKYLYLTLKTQGARDTLYNALLD 252 (917)
Q Consensus 176 ~~~~~~~~~~f~~~~~~~~~~~~~~~~~~i~~~~~---r~~~~~~~~~e~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~ 252 (917)
-+.|+++.|++-...+ +..+.-.|++.++..|.. .....++.+++|.+.+ +.++|.-.+.++++.=++.|..
T Consensus 34 ~fvL~~~~L~yy~~~~-~~~~~g~i~l~~~~~v~~~~~~~~~~~~~~F~i~~~~----r~~~l~a~s~~e~~~W~~al~~ 108 (125)
T 1eaz_A 34 YFQLDENTIGYFKSEL-EKEPLRVIPLKEVHKVQECKQSDIMMRDNLFEIVTTS----RTFYVQADSPEEMHSWIKAVSG 108 (125)
T ss_dssp EEEECSSEEEEESSTT-CSSCSEEEEGGGCCEEEECTTHHHHTCSSEEEEECSS----CEEEEECSSHHHHHHHHHHHHH
T ss_pred EEEEeCCEEEEEcCCC-CCcceeEEEcccceEEeeccccccCCcCCEEEEEeCC----cEEEEEcCCHHHHHHHHHHHHH
Confidence 5677788877643222 245667788888776644 2233467789998654 5888899999998887777653
No 404
>1wg7_A Dedicator of cytokinesis protein 9; pleckstrin homology domain, zizimin1, structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=26.74 E-value=1.8e+02 Score=26.43 Aligned_cols=73 Identities=14% Similarity=0.114 Sum_probs=48.7
Q ss_pred EEEEecC-----eEEEEeCCCCCCceEEEEeccccceeeeccccCcceEEEEEEecCCCceeEEEecCChhhHHHHHHHH
Q psy3053 176 RIVLSST-----NLYFQPFNNIEPHKLLKVRLAGIKRIIRRRFLLQQVGIEIYFKDLEPVKYLYLTLKTQGARDTLYNAL 250 (917)
Q Consensus 176 ~~~~~~~-----~~~f~~~~~~~~~~~~~~~~~~i~~~~~r~~~~~~~~~e~~~~~~~~~~~~~~~f~~~~~~~~~~~~~ 250 (917)
-+.|.+. .|++-.....+..+.-.|+|..+..+... -.-++.+++|.+.++ +.++|.-.+.++++.=+..|
T Consensus 44 wfvL~~~~~g~~~L~yy~~~~~~~~~~g~I~L~~~~~~~~~-~~~~~~~F~i~~~~~---r~~~l~A~s~~e~~~Wi~al 119 (150)
T 1wg7_A 44 FFHLIQLGDGSYNLNFYKDEKISKEPKGSIFLDSCMGVVQN-NKVRRFAFELKMQDK---SSYLLAADSEVEMEEWITIL 119 (150)
T ss_dssp EEEEEECSSSCEEEEEESSSCCSSCCSEEECTTTCCEECCC-CSSCTTEEEEECSSS---CEEEEECSSHHHHHHHHHHH
T ss_pred EEEEecCCCCceEEEEECCCCCCCCcCcEEecccCEEEecC-CCCCceEEEEEeCCC---cEEEEEeCCHHHHHHHHHHH
Confidence 3556663 55553333223456677888887666432 134567999998875 68999999999998877777
Q ss_pred hC
Q psy3053 251 LD 252 (917)
Q Consensus 251 ~~ 252 (917)
..
T Consensus 120 ~~ 121 (150)
T 1wg7_A 120 NK 121 (150)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 405
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=26.63 E-value=1.7e+02 Score=33.69 Aligned_cols=62 Identities=15% Similarity=0.152 Sum_probs=44.2
Q ss_pred CceEEEEEeCCCCEEEEEEC------------CCeEEEEECCCCeeeEEecCCCCCCeEEEEEecCCCEEEEEe
Q psy3053 714 NRIKCLAISKDNNQLAVGTE------------AGELIIWSLENHLMTQQLSDDINASVNGVLFSEDGCRVLSCG 775 (917)
Q Consensus 714 ~~V~~l~~spdg~~Lasgs~------------dG~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspdg~~L~s~s 775 (917)
.....|+|+++|.+.++... ...+..++..+++....+.......++.++|+||++.|.++-
T Consensus 476 nsPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLfV~v 549 (592)
T 4a9v_A 476 NSPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVGI 549 (592)
T ss_dssp CCEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEEE
T ss_pred CCCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEEEEE
Confidence 34678999999987774332 125777777778766655533456799999999999887763
No 406
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A
Probab=25.99 E-value=6.4e+02 Score=27.06 Aligned_cols=234 Identities=12% Similarity=0.024 Sum_probs=123.8
Q ss_pred ceeEEEecCCCCEEEEEECC-CeEEEEeCCCCCCCcc-CCcc---eeee-ccCCCceEEEEEeCCCCEEEEEECCCeEEE
Q psy3053 666 AISCVAWDEKRKRLISGSWD-CTVRVWNTGASWSHMK-PSKS---LVSQ-LDLDNRIKCLAISKDNNQLAVGTEAGELII 739 (917)
Q Consensus 666 ~Vt~l~~spd~~~L~Sgs~D-gtI~vWdl~~~~~~~~-~~~~---~~~~-~~h~~~V~~l~~spdg~~Lasgs~dG~I~i 739 (917)
.|..++... .+.+....| +.|..|-.......-. .... .... ......|..++.. ..+.++-+.+|.|+.
T Consensus 69 ~i~~va~G~--~ht~al~~~gg~v~~wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~ia~G--~~h~~alt~~G~v~~ 144 (406)
T 4d9s_A 69 QIVSVTCGA--DHTVAYSQSGMEVYSWGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIACG--DSHCLAVTMEGEVQS 144 (406)
T ss_dssp CEEEEEECS--SEEEEEETTTTEEEEEECCGGGTTCSSSCCCEEEEEECGGGTTCCEEEEEEC--SSEEEEEETTSCEEE
T ss_pred CEEEEEeCc--ceEEEEECCCCEEEEEcCCCCcCCCCCCCCccccceEecccCCCCEEEEEEC--hhheEEEcCCCcEEE
Confidence 566666543 344444455 4999996543211000 0000 0011 1122356666543 456666688999999
Q ss_pred EECCCC-----------eeeEEecCCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCC----------eEEEE-ee-c
Q psy3053 740 WSLENH-----------LMTQQLSDDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTG----------MQVCN-KV-F 796 (917)
Q Consensus 740 wDl~~~-----------~~~~~l~~~h~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~tg----------~~i~~-~~-~ 796 (917)
|-.... .....+.......|..++.. ..+.++...+|.|+.|-.... ..... .. .
T Consensus 145 wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~i~~va~G--~~hs~alt~~G~v~~wG~n~~GqlG~g~~~~~~~p~~v~~~ 222 (406)
T 4d9s_A 145 WGRNQNGQLGLGDTEDSLVPQKIQAFEGIRIKMVAAG--AEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTST 222 (406)
T ss_dssp EECCTTSTTCSSSCCCEEEEEECGGGTTCCEEEEEEC--SSEEEEEETTSCEEEEECCTTSTTCSSSSCCEEEEEECCCS
T ss_pred eCCCCCccCCCCCCCCcccceEecccCCCcEEEEecC--CCeEEEEeCCCCEEEeeCCCCCCCCCCCCCCcCccEEeccc
Confidence 965431 11122221122356655543 345666678899999964321 11111 11 1
Q ss_pred -CCceEEEEEeCCCEEEEEeCCCeEEEEECCCC----------E-EEEEEe-cCCCceEEEeecCCEEEEEeCCCeEEEE
Q psy3053 797 -EEKLLCLSWAGEEKVILGGALGMVYLVDLIQV----------Q-LLKQVR-AHKDAVLSLHFDNCTMLVGCWDSCVVIY 863 (917)
Q Consensus 797 -~~~i~~l~~s~~~~lv~gs~dG~I~vwdl~~~----------~-~i~~l~-~h~~~V~sis~dg~~Lasgs~DG~I~Iw 863 (917)
...+..++.... ..++-+.+|.|+.|-.... . ....+. .....|..++....+.++-..||.|+.|
T Consensus 223 ~~~~i~~va~G~~-ht~~l~~~G~v~~wG~n~~GqlG~g~~~~~~~p~~v~~~~~~~v~~i~~G~~hs~alt~~G~v~~w 301 (406)
T 4d9s_A 223 GGEKMSMVACGWR-HTISVSYSGALYTYGWSKYGQLGHGDLEDHLIPHKLEALSNSFISQISGGWRHTMALTSDGKLYGW 301 (406)
T ss_dssp TTCCEEEEEECSS-EEEEEETTCCEEEEECCTTSTTCSSSCCCEEEEEECGGGTTSCEEEEEECSSEEEEEETTSCEEEE
T ss_pred CCceEEEEEECCC-cEEEEcCCCCEEEeeCCCCCCCCCCCCcCccccEEecccCCCCEEEEEecCCEEEEEcCCCeEEEe
Confidence 234555555444 6677788999999965321 1 111222 1234577887777777777899999999
Q ss_pred ECcCC------------eEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecC
Q psy3053 864 DVECG------------RIVTELAGHEDAISCVAWDEKRKRLISGNLVGAPKLYATE 908 (917)
Q Consensus 864 dl~tg------------~~l~~l~~h~~~V~slafSpdg~~LaSgs~DG~V~IWdl~ 908 (917)
-.... .+..........|..++... ...+....||.|..|--+
T Consensus 302 G~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~va~G~--~hs~alt~~G~v~~wG~n 356 (406)
T 4d9s_A 302 GWNKFGQVGVGNNLDQCSPVQVRFPDDQKVVQVSCGW--RHTLAVTERNNVFAWGRG 356 (406)
T ss_dssp ECCTTSTTCSSSSSCEEEEEEECCGGGCCEEEEEECS--SEEEEEETTSCEEEEECC
T ss_pred eCCCCCCCCCCCCCCCccCEEEeccCCCcEEEEEeCC--CeEEEEeCCCCEEEecCC
Confidence 64321 11111111234566666543 345555688999999764
No 407
>2cof_A Protein KIAA1914; PH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=23.63 E-value=3.3e+02 Score=22.89 Aligned_cols=73 Identities=15% Similarity=0.091 Sum_probs=47.1
Q ss_pred EEEEecCeEEEEeCCCCCCceEEEEeccccceeeeccccCcceEEEEEEecCCCceeEEEecCChhhHHHHHHHHhC
Q psy3053 176 RIVLSSTNLYFQPFNNIEPHKLLKVRLAGIKRIIRRRFLLQQVGIEIYFKDLEPVKYLYLTLKTQGARDTLYNALLD 252 (917)
Q Consensus 176 ~~~~~~~~~~f~~~~~~~~~~~~~~~~~~i~~~~~r~~~~~~~~~e~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~ 252 (917)
-+.|.++.|++.......+.+...|++.... |..-.-.-++.+++|.+.++ +.++|.-++.++++.=++.|..
T Consensus 26 wfvL~~~~L~yyk~~~~~~~~~~~i~l~~~~-v~~~~~~~~~~~F~i~~~~~---r~~~l~A~s~~e~~~Wi~al~~ 98 (107)
T 2cof_A 26 WCSVRDNHLHFYQDRNRSKVAQQPLSLVGCE-VVPDPSPDHLYSFRILHKGE---ELAKLEAKSSEEMGHWLGLLLS 98 (107)
T ss_dssp EEEECSSCEEEECSSTTCSEEEEEECTTTCE-EECCCBTTBSCEEEEEETTE---EEEEEECSSHHHHHHHHHHHHH
T ss_pred EEEEECCEEEEEeCCcccCCCeeEEeccceE-EEECCCCCCCeEEEEEeCCC---eEEEEEcCCHHHHHHHHHHHHH
Confidence 4677778776654333245666677765531 11111124567999998644 7899999999999888777764
No 408
>2cod_A Centaurin-delta 1; ARF GAP and RHO GAP with ankyrin repeat and PH domains (ARAP) 2, PH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=23.17 E-value=2.7e+02 Score=23.69 Aligned_cols=67 Identities=9% Similarity=0.119 Sum_probs=46.0
Q ss_pred EEEEecCeEEEEeCCCCCCceEEEEeccccceeeeccccCcceEEEEEEecCCCceeEEEecCChhhHHHHHHHHh
Q psy3053 176 RIVLSSTNLYFQPFNNIEPHKLLKVRLAGIKRIIRRRFLLQQVGIEIYFKDLEPVKYLYLTLKTQGARDTLYNALL 251 (917)
Q Consensus 176 ~~~~~~~~~~f~~~~~~~~~~~~~~~~~~i~~~~~r~~~~~~~~~e~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~ 251 (917)
-+.|++..|++-..... ..+.-.|++..+..|.... +.+++|...+ +.++|.-.+.++++.=++.|.
T Consensus 29 ~fvL~~~~L~yy~~~~~-~~~~g~i~l~~~~~v~~~~----~~~F~i~~~~----r~~~l~a~s~~e~~~Wi~~l~ 95 (115)
T 2cod_A 29 WVKFDGLSISYYNNEKE-MYSKGIIPLSAISTVRVQG----DNKFEVVTTQ----RTFVFRVEKEEERNDWISILL 95 (115)
T ss_dssp EEEECSSEEEEEESSCC-SSCCCEEETTTEEEEEEET----TTEEEEEESS----CCEEEECSSHHHHHHHHHHHH
T ss_pred EEEEECCEEEEEcCCCC-cccCCEEECCcceEEEeCC----CCEEEEEeCC----cEEEEECCCHHHHHHHHHHHH
Confidence 46777777776543321 3455678888877665432 6789998543 688899999988887777665
No 409
>2cay_A VPS36 PH domain, vacuolar protein sorting protein 36; transport, ESCRT-II, lipid-binding, multivesicular bodies, membrane; 1.9A {Saccharomyces cerevisiae} SCOP: b.55.1.12
Probab=23.01 E-value=1.2e+02 Score=28.09 Aligned_cols=80 Identities=16% Similarity=0.256 Sum_probs=49.7
Q ss_pred eEeceEEEEecCeEEEEeCCCCCCceEEEEeccccceeeeccccCcce-EEEEEEecC-CCceeEEEecCChhhHHHHHH
Q psy3053 171 VVNPGRIVLSSTNLYFQPFNNIEPHKLLKVRLAGIKRIIRRRFLLQQV-GIEIYFKDL-EPVKYLYLTLKTQGARDTLYN 248 (917)
Q Consensus 171 ~~~~g~~~~~~~~~~f~~~~~~~~~~~~~~~~~~i~~~~~r~~~~~~~-~~e~~~~~~-~~~~~~~~~f~~~~~~~~~~~ 248 (917)
....|++.||+.+|.|.+... .....+.+++..|..+..--=.+... -+-+....+ .....+=|.|.+... +++..
T Consensus 49 ~~k~G~lyLTshRIIyv~~~~-~~~~SfslPL~~v~~~e~~~~~fg~s~Ki~l~~~p~~~~~~~~KLsFk~GGa-~eF~~ 126 (145)
T 2cay_A 49 QRQRGRIFLTSQRIIYIDDAK-PTQNSLGLELDDLAYVNYSSGFLTRSPRLILFFKDPSSSTEFVQLSFRKSDG-VLFSQ 126 (145)
T ss_dssp TCSSEEEEEESSEEEEEESSC-HHHHCEEEEGGGEEEEEEECSSSSSSCEEEEEESSCSSTTCCEEEEESSSCC-HHHHH
T ss_pred CCCccEEEEEcCeEEEecCCC-CcceEEEeEhHheeeeeEEcCccccCceEEEEecCCCCCceEEEEEEcCCCc-hHHHH
Confidence 456899999999999987543 12256789999998876533222222 222344321 112356678887655 66777
Q ss_pred HHhC
Q psy3053 249 ALLD 252 (917)
Q Consensus 249 ~~~~ 252 (917)
.+..
T Consensus 127 ~l~~ 130 (145)
T 2cay_A 127 ATER 130 (145)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6653
No 410
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=22.90 E-value=7.4e+02 Score=26.72 Aligned_cols=143 Identities=10% Similarity=0.074 Sum_probs=77.9
Q ss_pred EEEEEEeccC--eeeEEecc------CCCceeEEEec---CC----CCEEEEE-ECCCeEEEEeCCCCCCCc------cC
Q psy3053 645 CVVIYDVECG--RIVTELAG------HEDAISCVAWD---EK----RKRLISG-SWDCTVRVWNTGASWSHM------KP 702 (917)
Q Consensus 645 ~I~Iwdl~tg--~~i~~l~~------H~~~Vt~l~~s---pd----~~~L~Sg-s~DgtI~vWdl~~~~~~~------~~ 702 (917)
.|.+||+.++ +.++++.- ....+..+++. ++ +.++..+ +..+.|.|+|+.++..-. .+
T Consensus 124 kLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~p 203 (381)
T 3q6k_A 124 AIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFKA 203 (381)
T ss_dssp EEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGSC
T ss_pred eEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCcc
Confidence 4667888887 77766542 23457777777 22 2344333 346789999998874111 01
Q ss_pred Cc-ceeeecc----CCCceEEEEEeCC----CCEEEEEECCC-eEEEEE---CCCC---eeeEEecC-CCCCCeEEEEEe
Q psy3053 703 SK-SLVSQLD----LDNRIKCLAISKD----NNQLAVGTEAG-ELIIWS---LENH---LMTQQLSD-DINASVNGVLFS 765 (917)
Q Consensus 703 ~~-~~~~~~~----h~~~V~~l~~spd----g~~Lasgs~dG-~I~iwD---l~~~---~~~~~l~~-~h~~~V~~v~fs 765 (917)
.. ......+ ....+..++++|+ ++.|..+.-.+ .++-.. ++.. ..++.+-. +....-..+++.
T Consensus 204 d~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss~~ly~V~T~~L~~~~~~~~v~~~G~kg~~s~~~~~~~D 283 (381)
T 3q6k_A 204 ERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSAIKVYSVNTKELKQKGGKLNPELLGNRGKYNDAIALAYD 283 (381)
T ss_dssp CSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSCSEEEEEEHHHHSSTTCCCCCEEEEECCTTCCEEEEEEC
T ss_pred ccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCCCcEEEEEHHHhhCcchhhceEEeeecCCCCCcceEEEe
Confidence 00 0000011 1356889999997 66776665444 333332 1111 11222210 111333455665
Q ss_pred -cCCCEEEEEeCCCeEEEEECCC
Q psy3053 766 -EDGCRVLSCGNNCMLNVYDLTT 787 (917)
Q Consensus 766 -pdg~~L~s~s~Dg~I~iwDl~t 787 (917)
.+|..+++--..+.|..|+..+
T Consensus 284 ~~~G~ly~~~~~~~aI~~w~~~~ 306 (381)
T 3q6k_A 284 PKTKVIFFAEANTKQVSCWNTQK 306 (381)
T ss_dssp TTTCEEEEEESSSSEEEEEETTS
T ss_pred CCCCeEEEEeccCCeEEEEeCCC
Confidence 5677777777788899999875
No 411
>2dkp_A Pleckstrin homology domain-containing family A member 5; PH domain, pleckstrin homology domain-containing protein family A member 5; NMR {Homo sapiens}
Probab=22.72 E-value=3.3e+02 Score=23.50 Aligned_cols=72 Identities=15% Similarity=0.216 Sum_probs=48.5
Q ss_pred EEEEecCeEEEEeCCCCCCceEEEEeccccceee--eccccCcceEEEEEEecCCCceeEEEecCChhhHHHHHHHHh
Q psy3053 176 RIVLSSTNLYFQPFNNIEPHKLLKVRLAGIKRII--RRRFLLQQVGIEIYFKDLEPVKYLYLTLKTQGARDTLYNALL 251 (917)
Q Consensus 176 ~~~~~~~~~~f~~~~~~~~~~~~~~~~~~i~~~~--~r~~~~~~~~~e~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~ 251 (917)
-+.|++..|++..... +..+.-.|++..+.-.. .....-++.+++|.+.++ +.++|.-.+.++++.=++.|.
T Consensus 42 ~fvL~~~~L~yy~~~~-~~~~~g~i~L~~~~v~~~~~~~~~~~~~~F~i~~~~~---r~~~l~a~s~~e~~~Wi~al~ 115 (128)
T 2dkp_A 42 WFVLSDLCLFYYRDEK-EEGILGSILLPSFQIALLTSEDHINRKYAFKAAHPNM---RTYYFCTDTGKEMELWMKAML 115 (128)
T ss_dssp EEEEETTEEEEESSTT-CCSEEEEECGGGSEEEECCGGGCCSSCSEEEEECSSS---CCEEEECSSHHHHHHHHHHHH
T ss_pred EEEEeCCEEEEECCCC-CcccceEEEcCceEEEEcCCcccCCCCeEEEEEcCCC---CEEEEEcCCHHHHHHHHHHHH
Confidence 5677888887754332 24566678887654222 122234567999998765 688999999999988777774
No 412
>2zux_A YESW protein; beta-propeller, lyase, rhamnose complex; HET: RAM; 1.32A {Bacillus subtilis} PDB: 2z8s_A* 2z8r_A*
Probab=22.43 E-value=9.2e+02 Score=27.63 Aligned_cols=181 Identities=10% Similarity=0.050 Sum_probs=91.5
Q ss_pred ceEEEEEeCCCC-EEEEEECCCeEEEEECCCCeeeEEecCCCCCCeEEEEEecC--CCEEEEEeCCC----eEEEEECCC
Q psy3053 715 RIKCLAISKDNN-QLAVGTEAGELIIWSLENHLMTQQLSDDINASVNGVLFSED--GCRVLSCGNNC----MLNVYDLTT 787 (917)
Q Consensus 715 ~V~~l~~spdg~-~Lasgs~dG~I~iwDl~~~~~~~~l~~~h~~~V~~v~fspd--g~~L~s~s~Dg----~I~iwDl~t 787 (917)
.+....+.-||+ -|+.|+. ++| ..|+.+.....+|...+....|.|+ |..++.+.+++ -..+.|..+
T Consensus 327 ~~~vaDVDgDG~dEIv~Gs~-----~iD-~dG~~L~st~~gHGDa~hv~dldP~r~GlEv~~~~E~~~~~~G~~~~dA~t 400 (591)
T 2zux_A 327 NLSIADVDGDGKDEIIFGSM-----AVD-HDGKGMYSTGLGHGDALHTGDLDPGRPGLEVFQVHEDKNAKYGLSFRDAAT 400 (591)
T ss_dssp CCEEECCSSSSSCEEEETTE-----EEC-TTSCEEEECSCCCCSCEEEECCCTTSSSCEEEEECCCTTSSCSEEEEETTT
T ss_pred CCeeEeCCCCCCceEEEeee-----EEC-CCCCEeeeCCCCCCCeeEEeecCCCCCCcEEEEEecCCCCCCccEEEECCC
Confidence 344455556663 3443331 223 3344555554578888888888886 55777776652 355689999
Q ss_pred CeEEEEeecC---CceEEEEEeCC--CE-EEEEeCCCeEEEEECCCCEEEEEEecCCCceEEEeecCCEEEEEeCCCeEE
Q psy3053 788 GMQVCNKVFE---EKLLCLSWAGE--EK-VILGGALGMVYLVDLIQVQLLKQVRAHKDAVLSLHFDNCTMLVGCWDSCVV 861 (917)
Q Consensus 788 g~~i~~~~~~---~~i~~l~~s~~--~~-lv~gs~dG~I~vwdl~~~~~i~~l~~h~~~V~sis~dg~~Lasgs~DG~I~ 861 (917)
|+.+...... +...+..++++ +. +.+ ++ .+++. +++.+.... ....-..+-|+|...--.-..+.|.
T Consensus 401 G~vlw~~~~~~d~Gr~~~~Didp~~pG~E~w~---~~--~l~~~-~G~~i~~~~-p~~~N~~i~WdGDl~relld~~~i~ 473 (591)
T 2zux_A 401 GKILWGVYAGKDVGRGMAADIDPRYPGQEVWA---NG--SLYSA-KGVKIGSGV-PSSTNFGIWWDGDLLREQLDSNRID 473 (591)
T ss_dssp CCEEEEECCSSCCCCEEEECCCTTSSSCEEEE---TT--EEECT-TSCBCSSCC-CSCCSEEECCSSSSSCEEEETTEEE
T ss_pred CcEEEEcCCCCCCCceeEEecCCCCCceEEEe---cC--ceECC-CCCEecCCC-CCCcceeEEECCCCcHhhhCCceEE
Confidence 9998766532 23333333333 11 222 22 34554 233322110 1112234566654322222235788
Q ss_pred EEECcCCeE--EEEecC-------CCCCEEEEEEcCCCC-EEEEE-eCCCcEEEEecC
Q psy3053 862 IYDVECGRI--VTELAG-------HEDAISCVAWDEKRK-RLISG-NLVGAPKLYATE 908 (917)
Q Consensus 862 Iwdl~tg~~--l~~l~~-------h~~~V~slafSpdg~-~LaSg-s~DG~V~IWdl~ 908 (917)
-|+...++. +.++.+ ...+..+..+--|.+ -++.. ..+..++||...
T Consensus 474 k~~~~~~~~~~l~~~~g~~snngtk~~P~l~aDi~GDwREEvI~~t~D~~~LrIYtt~ 531 (591)
T 2zux_A 474 KWDYQNGVSKNMLTASGAAANNGTKATPTLQADLLGDWREEVVWRTEDSSALRIYTTT 531 (591)
T ss_dssp EEETTTTEEEEEEECTTEECBSGGGCBCSEEECCSSSSSCEEEEEETTSSEEEEECCC
T ss_pred ecccCCCceeEEEeecccccCCCCCCCEeeEEeccccCeeEEEEEeCCCCeEEEEeCC
Confidence 899877763 334332 122333333433432 34434 455569999875
No 413
>1zvu_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 3.00A {Escherichia coli}
Probab=21.58 E-value=1e+03 Score=27.93 Aligned_cols=79 Identities=13% Similarity=0.184 Sum_probs=49.6
Q ss_pred CceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCccCCcceeeeccCCCceEEEEEe-CCCCEEEEEECCCeEEEEECC
Q psy3053 665 DAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMKPSKSLVSQLDLDNRIKCLAIS-KDNNQLAVGTEAGELIIWSLE 743 (917)
Q Consensus 665 ~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~~~~~~~~~~~h~~~V~~l~~s-pdg~~Lasgs~dG~I~iwDl~ 743 (917)
..|.++....++.+++.++..|.++.-.+..-........... ....++.+..+... ..+..++..+.+|.+..++..
T Consensus 554 e~i~~~~~~~~~~~l~~~T~~G~vk~~~l~~~~~~~~~g~~ai-~L~~~d~lv~~~~~~~~~~~v~l~t~~g~~lrf~~~ 632 (716)
T 1zvu_A 554 ATVDHMLMESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALI-TLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPVS 632 (716)
T ss_dssp CCEEEEECCCTTCEEEEEBTTSEEEEEEGGGGCCCSTTCEECB-CCCTTCCBCCCEECCCTTCEEEEEETTSEEEEEEST
T ss_pred CeEEEEEEecCCceEEEEeCCceEEEecHHHhcccCccceEEE-eeCCCCEEEEEEEecCCCCEEEEEeCCCeEEEEEHH
Confidence 4566555545677899999999999988754321111111122 22334555555554 345678889999999999876
Q ss_pred C
Q psy3053 744 N 744 (917)
Q Consensus 744 ~ 744 (917)
.
T Consensus 633 ~ 633 (716)
T 1zvu_A 633 D 633 (716)
T ss_dssp T
T ss_pred H
Confidence 4
No 414
>1btn_A Beta-spectrin; signal transduction protein; HET: I3P; 2.00A {Mus musculus} SCOP: b.55.1.1 PDB: 1mph_A
Probab=20.32 E-value=1.8e+02 Score=24.38 Aligned_cols=73 Identities=14% Similarity=0.095 Sum_probs=43.9
Q ss_pred EEEEecCeEEEEeCCC-----CCCceEEEEeccccceeeeccccCcceEEEEEEecCCCceeEEEecCChhhHHHHHHHH
Q psy3053 176 RIVLSSTNLYFQPFNN-----IEPHKLLKVRLAGIKRIIRRRFLLQQVGIEIYFKDLEPVKYLYLTLKTQGARDTLYNAL 250 (917)
Q Consensus 176 ~~~~~~~~~~f~~~~~-----~~~~~~~~~~~~~i~~~~~r~~~~~~~~~e~~~~~~~~~~~~~~~f~~~~~~~~~~~~~ 250 (917)
-+.|.+..|+|-.... ....+...|++..........+.-++.+++|.+.++ +.++|.-++.++++.=++.|
T Consensus 27 wfvL~~~~L~yyk~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~F~i~~~~~---~~~~~~A~s~~e~~~Wi~ai 103 (106)
T 1btn_A 27 YCVINNQEMGFYKDAKSAASGIPYHSEVPVSLKEAICEVALDYKKKKHVFKLRLSDG---NEYLFQAKDDEEMNTWIQAI 103 (106)
T ss_dssp EEEEETTEEEEESSHHHHHHTCCSSSCCCEECTTCEEEECSSCCSSSSEEEEECTTS---CEEEEECSSHHHHHHHHHHH
T ss_pred EEEEECCEEEEEeCCcccccCCCCCCcceEECCCCEEEEcccccCCccEEEEEecCC---CEEEEECCCHHHHHHHHHHH
Confidence 3667777777743211 111234445554432222223444677999998765 78899999988888777666
Q ss_pred h
Q psy3053 251 L 251 (917)
Q Consensus 251 ~ 251 (917)
.
T Consensus 104 ~ 104 (106)
T 1btn_A 104 S 104 (106)
T ss_dssp H
T ss_pred h
Confidence 4
No 415
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B
Probab=20.15 E-value=8.1e+02 Score=26.16 Aligned_cols=232 Identities=11% Similarity=0.041 Sum_probs=126.3
Q ss_pred CceeEEEecCCCCEEEEEECCCeEEEEeCCCCCCCcc-----CCcceeeeccCCCceEEEEEeCCCCEEEEEECCCeEEE
Q psy3053 665 DAISCVAWDEKRKRLISGSWDCTVRVWNTGASWSHMK-----PSKSLVSQLDLDNRIKCLAISKDNNQLAVGTEAGELII 739 (917)
Q Consensus 665 ~~Vt~l~~spd~~~L~Sgs~DgtI~vWdl~~~~~~~~-----~~~~~~~~~~h~~~V~~l~~spdg~~Lasgs~dG~I~i 739 (917)
..|..++... ...+.-..||.|..|-.......-. ..............|..++.. ..+.++-+.+|.|+.
T Consensus 59 ~~i~~va~G~--~hs~~l~~~G~v~~wG~n~~GqLG~~~~~~~~~~~P~~v~l~~~i~~va~G--~~hs~alt~~G~v~~ 134 (413)
T 1a12_A 59 EDVVQAEAGG--MHTVCLSKSGQVYSFGCNDEGALGRDTSVEGSEMVPGKVELQEKVVQVSAG--DSHTAALTDDGRVFL 134 (413)
T ss_dssp SCEEEEEECS--SEEEEEETTSCEEEEECCTTSTTCSCCCSTTGGGSCEECCCCSCEEEEEEC--SSEEEEEETTSCEEE
T ss_pred CCeEEEEeCC--CeEEEEcCCCCEEEEECCCCCCCCCCCCCCccccCCeEecCCCcEEEEecC--CCeEEEEcCCCcEEE
Confidence 4566666543 4555667899999997654211000 000001111223456665543 445666678899999
Q ss_pred EEC--CC-Cee-----------eEEecCCCCCCeEEEEEecCCCEEEEEeCCCeEEEEECCCC-eE--------------
Q psy3053 740 WSL--EN-HLM-----------TQQLSDDINASVNGVLFSEDGCRVLSCGNNCMLNVYDLTTG-MQ-------------- 790 (917)
Q Consensus 740 wDl--~~-~~~-----------~~~l~~~h~~~V~~v~fspdg~~L~s~s~Dg~I~iwDl~tg-~~-------------- 790 (917)
|-. .. +++ ...+ .....|..|+.. ..+.++...||.|+.|-.... +.
T Consensus 135 wG~~~n~~GqlG~~~~~~~~~~P~~v--~~~~~i~~ia~G--~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~ 210 (413)
T 1a12_A 135 WGSFRDNNGVIGLLEPMKKSMVPVQV--QLDVPVVKVASG--NDHLVMLTADGDLYTLGCGEQGQLGRVPELFANRGGRQ 210 (413)
T ss_dssp EECEEETTEEEESSBBTBCEEEEEEE--CCSSCEEEEEEC--SSEEEEEETTSCEEEEECCTTSTTCSCGGGTSSSCGGG
T ss_pred eeCCcCCCCccCcCCccccccCCEEe--cCCCCEEEEEec--CceEEEEcCCCCEEEeeCCCCCccCCCccccccccccc
Confidence 975 21 110 1111 123456555543 345566678889999865321 10
Q ss_pred ------E-EEee-------cCCceEEEEEeCCCEEEEEeCCCeEEEEECCCC----------E-EEEEEecC---CCceE
Q psy3053 791 ------V-CNKV-------FEEKLLCLSWAGEEKVILGGALGMVYLVDLIQV----------Q-LLKQVRAH---KDAVL 842 (917)
Q Consensus 791 ------i-~~~~-------~~~~i~~l~~s~~~~lv~gs~dG~I~vwdl~~~----------~-~i~~l~~h---~~~V~ 842 (917)
. .... ....+..++.... ..++-+.+|.|+.|-.... . ....+..- ...|.
T Consensus 211 ~~~~~~~P~~v~~~~~g~~~~~~i~~ia~G~~-hs~alt~~G~v~~wG~n~~gqLG~~~~~~~~~P~~v~~l~~~~~~v~ 289 (413)
T 1a12_A 211 GLERLLVPKCVMLKSRGSRGHVRFQDAFCGAY-FTFAISHEGHVYGFGLSNYHQLGTPGTESCFIPQNLTSFKNSTKSWV 289 (413)
T ss_dssp GHHHHHSCEECCCBCSSCCSBCCEEEEEEETT-EEEEEETTCCEEEEECCTTSTTSCSSCSCEEEEEECGGGCCTTCCEE
T ss_pred cccccccCceEeeccccccCCccEEEEEeCCC-EEEEEeCCCCEEEEeCCCCcCCCCCCCCcccccEEchhccCCCceEE
Confidence 0 0011 1234666666555 6666678999999976431 1 11122211 13477
Q ss_pred EEeecCCEEEEEeCCCeEEEEECcC------C-----eE-EEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecC
Q psy3053 843 SLHFDNCTMLVGCWDSCVVIYDVEC------G-----RI-VTELAGHEDAISCVAWDEKRKRLISGNLVGAPKLYATE 908 (917)
Q Consensus 843 sis~dg~~Lasgs~DG~I~Iwdl~t------g-----~~-l~~l~~h~~~V~slafSpdg~~LaSgs~DG~V~IWdl~ 908 (917)
.++......++-..||.|+.|-... + .. -..+.. -..|..++... ...+....||.|..|-.+
T Consensus 290 ~ia~G~~hs~al~~~G~v~~wG~n~~GqLG~g~~~~~~~~P~~v~~-l~~v~~v~~G~--~hs~alt~~G~v~~wG~n 364 (413)
T 1a12_A 290 GFSGGQHHTVCMDSEGKAYSLGRAEYGRLGLGEGAEEKSIPTLISR-LPAVSSVACGA--SVGYAVTKDGRVFAWGMG 364 (413)
T ss_dssp EEEECSSEEEEEETTSCEEEEECCGGGTTCSCTTCCCEEEEEECCS-SSSEEEEEECS--SEEEEEETTSCEEEEECC
T ss_pred EEecccceEEEEeCCCCEEEeeCCCCCccCCCCCCccccCCEEecc-cCceeEEEECc--ceEEEEeCCCCEEEecCC
Confidence 8877777777778899999996421 1 11 112222 23677776543 345555688999999764
Done!