BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3055
(219 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9VQZ6|ELP3_DROME Probable elongator complex protein 3 OS=Drosophila melanogaster
GN=Elp3 PE=2 SV=1
Length = 552
Score = 286 bits (731), Expect = 9e-77, Method: Compositional matrix adjust.
Identities = 136/167 (81%), Positives = 151/167 (90%), Gaps = 1/167 (0%)
Query: 13 LSIDERTVLTIGEIIQELLVAHKECKDVNLNQMKTRISSKYGLDTSPRLVDIIAAVPAEA 72
LS ER VL IGEIIQELL AH+ KDVNLN+MK+ ++SKYGLD+SPRLVDIIAAVP +A
Sbjct: 11 LSRQERQVLVIGEIIQELLKAHEAKKDVNLNRMKSLVASKYGLDSSPRLVDIIAAVPQDA 70
Query: 73 KKILLPKLKAKPIRTASGIAVVAVMCKPHRCPHINMTGNICVYCPGGPDSDFEYSTQSYT 132
KKILLPKL+AKPIRTASGIAVVAVMCKPHRCPHINMTGNICVYCPGGPDSDFEYSTQSYT
Sbjct: 71 KKILLPKLRAKPIRTASGIAVVAVMCKPHRCPHINMTGNICVYCPGGPDSDFEYSTQSYT 130
Query: 133 GYEPTSMRAIRARYNPYIQTRHRVEQLQQLGHSVDKEWEHVITTGNL 179
GYEPTSMRAIR+RY+P++QTRHRVEQL+QLGHSVDK E ++ G
Sbjct: 131 GYEPTSMRAIRSRYDPFLQTRHRVEQLKQLGHSVDK-VEFIVMGGTF 176
>sp|Q6NVL5|ELP3_XENTR Elongator complex protein 3 OS=Xenopus tropicalis GN=elp3 PE=2 SV=1
Length = 549
Score = 270 bits (691), Expect = 5e-72, Method: Compositional matrix adjust.
Identities = 126/172 (73%), Positives = 148/172 (86%), Gaps = 1/172 (0%)
Query: 8 GPISKLSIDERTVLTIGEIIQELLVAHKECKDVNLNQMKTRISSKYGLDTSPRLVDIIAA 67
GP K S E ++T+ ++I++L+ AH++ KDVNLN++KT+ S+KYGL PRLVDIIAA
Sbjct: 6 GPRGKQSQAELMMMTVADVIKQLVEAHEQGKDVNLNKLKTKTSAKYGLSAQPRLVDIIAA 65
Query: 68 VPAEAKKILLPKLKAKPIRTASGIAVVAVMCKPHRCPHINMTGNICVYCPGGPDSDFEYS 127
VP + +KIL+PKLKAKPIRTASGIAVVAVMCKPHRCPHIN TGNICVYCPGGPDSDFEYS
Sbjct: 66 VPPQYRKILVPKLKAKPIRTASGIAVVAVMCKPHRCPHINFTGNICVYCPGGPDSDFEYS 125
Query: 128 TQSYTGYEPTSMRAIRARYNPYIQTRHRVEQLQQLGHSVDKEWEHVITTGNL 179
TQSYTGYEPTSMRAIRARY+PY+QTRHRVEQL+QLGHSVDK E ++ G
Sbjct: 126 TQSYTGYEPTSMRAIRARYDPYLQTRHRVEQLKQLGHSVDK-VEFIVMGGTF 176
>sp|Q5ZHS1|ELP3_CHICK Elongator complex protein 3 OS=Gallus gallus GN=ELP3 PE=2 SV=1
Length = 546
Score = 266 bits (679), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 128/179 (71%), Positives = 149/179 (83%), Gaps = 6/179 (3%)
Query: 1 MGRNNKHGPISKLSIDERTVLTIGEIIQELLVAHKECKDVNLNQMKTRISSKYGLDTSPR 60
MG+ K LS E ++TI +II++L+ AH++ KDVNLN++KT+ S+KYGL PR
Sbjct: 1 MGQKRK-----DLSHAELMMMTIADIIKQLIEAHEQGKDVNLNKLKTKTSAKYGLSAQPR 55
Query: 61 LVDIIAAVPAEAKKILLPKLKAKPIRTASGIAVVAVMCKPHRCPHINMTGNICVYCPGGP 120
LVDIIAAVP + +K L+PKLKAKPIRTASGIAVVAVMCKPHRCPHIN TGNICVYCPGGP
Sbjct: 56 LVDIIAAVPPQHRKALVPKLKAKPIRTASGIAVVAVMCKPHRCPHINFTGNICVYCPGGP 115
Query: 121 DSDFEYSTQSYTGYEPTSMRAIRARYNPYIQTRHRVEQLQQLGHSVDKEWEHVITTGNL 179
DSDFEYSTQSYTGYEPTSMRAIRARY+PY+QTRHRVEQL+QLGHSVDK E ++ G
Sbjct: 116 DSDFEYSTQSYTGYEPTSMRAIRARYDPYLQTRHRVEQLKQLGHSVDK-VEFIVMGGTF 173
>sp|Q5HZM6|ELP3_XENLA Elongator complex protein 3 OS=Xenopus laevis GN=elp3 PE=2 SV=1
Length = 549
Score = 265 bits (676), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 122/167 (73%), Positives = 146/167 (87%), Gaps = 1/167 (0%)
Query: 13 LSIDERTVLTIGEIIQELLVAHKECKDVNLNQMKTRISSKYGLDTSPRLVDIIAAVPAEA 72
+S E ++T+ ++I++L+ AH++ KDVNLN++KT+ S+KYGL PRLVDIIAAVP +
Sbjct: 11 MSQAELMMMTVADVIKQLVEAHEQGKDVNLNKLKTKTSAKYGLSAQPRLVDIIAAVPPQY 70
Query: 73 KKILLPKLKAKPIRTASGIAVVAVMCKPHRCPHINMTGNICVYCPGGPDSDFEYSTQSYT 132
+KIL+PKLKAKPIRTASGIAVVAVMCKPHRCPHIN TGNICVYCPGGPDSDFEYSTQSYT
Sbjct: 71 RKILVPKLKAKPIRTASGIAVVAVMCKPHRCPHINFTGNICVYCPGGPDSDFEYSTQSYT 130
Query: 133 GYEPTSMRAIRARYNPYIQTRHRVEQLQQLGHSVDKEWEHVITTGNL 179
GYEPTSMRAIRARY+PY+QTRHRVEQL+QLGH+VDK E ++ G
Sbjct: 131 GYEPTSMRAIRARYDPYLQTRHRVEQLKQLGHNVDK-VEFIVMGGTF 176
>sp|Q2KJ61|ELP3_BOVIN Elongator complex protein 3 OS=Bos taurus GN=ELP3 PE=2 SV=2
Length = 547
Score = 264 bits (675), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 121/167 (72%), Positives = 147/167 (88%), Gaps = 1/167 (0%)
Query: 13 LSIDERTVLTIGEIIQELLVAHKECKDVNLNQMKTRISSKYGLDTSPRLVDIIAAVPAEA 72
LS + +LTIG++I++L+ AH++ KD++LN++KTR ++KYGL PRLVDIIAAVP +
Sbjct: 9 LSPAQLMMLTIGDVIKQLIEAHEQGKDIDLNKVKTRTAAKYGLSAQPRLVDIIAAVPPQY 68
Query: 73 KKILLPKLKAKPIRTASGIAVVAVMCKPHRCPHINMTGNICVYCPGGPDSDFEYSTQSYT 132
+K+L+PKLKAKPIRTASGIAVVAVMCKPHRCPHI+ TGNICVYCPGGPDSDFEYSTQSYT
Sbjct: 69 RKVLVPKLKAKPIRTASGIAVVAVMCKPHRCPHISFTGNICVYCPGGPDSDFEYSTQSYT 128
Query: 133 GYEPTSMRAIRARYNPYIQTRHRVEQLQQLGHSVDKEWEHVITTGNL 179
GYEPTSMRAIRARY+PY+QTRHR+EQL+QLGHSVDK E ++ G
Sbjct: 129 GYEPTSMRAIRARYDPYLQTRHRIEQLKQLGHSVDK-VEFIVMGGTF 174
>sp|Q9CZX0|ELP3_MOUSE Elongator complex protein 3 OS=Mus musculus GN=Elp3 PE=2 SV=1
Length = 547
Score = 264 bits (674), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 121/167 (72%), Positives = 147/167 (88%), Gaps = 1/167 (0%)
Query: 13 LSIDERTVLTIGEIIQELLVAHKECKDVNLNQMKTRISSKYGLDTSPRLVDIIAAVPAEA 72
LS E +LTIG++I++L+ AH++ KDV+LN+MKT+ ++KYGL + PRLVDIIAAVP
Sbjct: 9 LSPAELMMLTIGDVIKQLVEAHEQGKDVDLNKMKTKTAAKYGLASQPRLVDIIAAVPPHY 68
Query: 73 KKILLPKLKAKPIRTASGIAVVAVMCKPHRCPHINMTGNICVYCPGGPDSDFEYSTQSYT 132
+KIL+PKLKAKP+RTASGIAVVAVMCKPHRCPHI+ TGNIC+YCPGGPDSDFEYSTQSYT
Sbjct: 69 RKILIPKLKAKPVRTASGIAVVAVMCKPHRCPHISFTGNICIYCPGGPDSDFEYSTQSYT 128
Query: 133 GYEPTSMRAIRARYNPYIQTRHRVEQLQQLGHSVDKEWEHVITTGNL 179
GYEPTSMRAIRARY+P++QTRHR+EQL+QLGHSVDK E ++ G
Sbjct: 129 GYEPTSMRAIRARYDPFLQTRHRIEQLKQLGHSVDK-VEFIVMGGTF 174
>sp|Q5RIC0|ELP3_DANRE Elongator complex protein 3 OS=Danio rerio GN=elp3 PE=2 SV=3
Length = 548
Score = 263 bits (673), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 126/179 (70%), Positives = 149/179 (83%), Gaps = 4/179 (2%)
Query: 1 MGRNNKHGPISKLSIDERTVLTIGEIIQELLVAHKECKDVNLNQMKTRISSKYGLDTSPR 60
MG+ K S LS E ++TI ++I++L+ AH+E KD+NLN++KT+ S+KYGL PR
Sbjct: 1 MGKPKKK---SDLSRAELMMMTIADVIKQLVEAHEEGKDINLNKVKTKTSAKYGLSAQPR 57
Query: 61 LVDIIAAVPAEAKKILLPKLKAKPIRTASGIAVVAVMCKPHRCPHINMTGNICVYCPGGP 120
LVDIIAAVP ++ L+PKLKAKPIRTASGIAVVAVMCKPHRCPHI+ TGNICVYCPGGP
Sbjct: 58 LVDIIAAVPPHYRRALVPKLKAKPIRTASGIAVVAVMCKPHRCPHISFTGNICVYCPGGP 117
Query: 121 DSDFEYSTQSYTGYEPTSMRAIRARYNPYIQTRHRVEQLQQLGHSVDKEWEHVITTGNL 179
DSDFEYSTQSYTGYEPTSMRAIRARY+PY+QTRHRVEQL+QLGHSVDK E ++ G
Sbjct: 118 DSDFEYSTQSYTGYEPTSMRAIRARYDPYLQTRHRVEQLKQLGHSVDK-VEFIVMGGTF 175
>sp|Q9H9T3|ELP3_HUMAN Elongator complex protein 3 OS=Homo sapiens GN=ELP3 PE=1 SV=2
Length = 547
Score = 263 bits (673), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 120/167 (71%), Positives = 147/167 (88%), Gaps = 1/167 (0%)
Query: 13 LSIDERTVLTIGEIIQELLVAHKECKDVNLNQMKTRISSKYGLDTSPRLVDIIAAVPAEA 72
LS E +LTIG++I++L+ AH++ KD++LN++KT+ ++KYGL PRLVDIIAAVP +
Sbjct: 9 LSPAELMMLTIGDVIKQLIEAHEQGKDIDLNKVKTKTAAKYGLSAQPRLVDIIAAVPPQY 68
Query: 73 KKILLPKLKAKPIRTASGIAVVAVMCKPHRCPHINMTGNICVYCPGGPDSDFEYSTQSYT 132
+K+L+PKLKAKPIRTASGIAVVAVMCKPHRCPHI+ TGNICVYCPGGPDSDFEYSTQSYT
Sbjct: 69 RKVLMPKLKAKPIRTASGIAVVAVMCKPHRCPHISFTGNICVYCPGGPDSDFEYSTQSYT 128
Query: 133 GYEPTSMRAIRARYNPYIQTRHRVEQLQQLGHSVDKEWEHVITTGNL 179
GYEPTSMRAIRARY+P++QTRHR+EQL+QLGHSVDK E ++ G
Sbjct: 129 GYEPTSMRAIRARYDPFLQTRHRIEQLKQLGHSVDK-VEFIVMGGTF 174
>sp|Q60LW7|ELP3_CAEBR Probable elongator complex protein 3 OS=Caenorhabditis briggsae
GN=elpc-3 PE=3 SV=1
Length = 548
Score = 241 bits (615), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 114/158 (72%), Positives = 130/158 (82%), Gaps = 1/158 (0%)
Query: 22 TIGEIIQELLVAHKECKDVNLNQMKTRISSKYGLDTSPRLVDIIAAVPAEAKKILLPKLK 81
T+ EI++ L+ AH + KDVNLN++K ++ K GL P+LVDIIA VPA+ K LLPKLK
Sbjct: 14 TVNEIVKLLIEAHNQKKDVNLNRLKCIVAQKNGLSFQPKLVDIIAGVPADYKDTLLPKLK 73
Query: 82 AKPIRTASGIAVVAVMCKPHRCPHINMTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRA 141
AKP+RTASGIAVVAVM KPHRCPHIN TGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRA
Sbjct: 74 AKPVRTASGIAVVAVMSKPHRCPHINFTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRA 133
Query: 142 IRARYNPYIQTRHRVEQLQQLGHSVDKEWEHVITTGNL 179
IRARYNPY+QTR R+ QL QLGHSVDK E ++ G
Sbjct: 134 IRARYNPYLQTRGRLNQLMQLGHSVDK-VEFIVMGGTF 170
>sp|Q23651|ELP3_CAEEL Probable elongator complex protein 3 OS=Caenorhabditis elegans
GN=elpc-3 PE=3 SV=2
Length = 547
Score = 240 bits (612), Expect = 7e-63, Method: Compositional matrix adjust.
Identities = 114/158 (72%), Positives = 130/158 (82%), Gaps = 1/158 (0%)
Query: 22 TIGEIIQELLVAHKECKDVNLNQMKTRISSKYGLDTSPRLVDIIAAVPAEAKKILLPKLK 81
TI EI++ L+ AH + KDVNLN++K ++ K GL P+LVDIIA VP++ K LLPKLK
Sbjct: 14 TINEIVKLLIEAHNQKKDVNLNRLKCIVAQKNGLSFQPKLVDIIAGVPSDYKDSLLPKLK 73
Query: 82 AKPIRTASGIAVVAVMCKPHRCPHINMTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRA 141
AKP+RTASGIAVVAVM KPHRCPHIN TGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRA
Sbjct: 74 AKPVRTASGIAVVAVMSKPHRCPHINFTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRA 133
Query: 142 IRARYNPYIQTRHRVEQLQQLGHSVDKEWEHVITTGNL 179
IRARYNPY+QTR R+ QL QLGHSVDK E ++ G
Sbjct: 134 IRARYNPYLQTRGRLNQLMQLGHSVDK-VEFIVMGGTF 170
>sp|Q1ZXC6|ELP3_DICDI Probable elongator complex protein 3 OS=Dictyostelium discoideum
GN=elp3 PE=3 SV=1
Length = 559
Score = 233 bits (594), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 108/158 (68%), Positives = 131/158 (82%), Gaps = 1/158 (0%)
Query: 22 TIGEIIQELLVAHKECKDVNLNQMKTRISSKYGLDTSPRLVDIIAAVPAEAKKILLPKLK 81
T+GEI+ L+ A+KE K VNL ++KT +++K L P+ VDII+A+P K LLP LK
Sbjct: 30 TVGEIVNALINAYKEGKKVNLLKIKTELAAKNSLSDQPKSVDIISAIPESYKNTLLPLLK 89
Query: 82 AKPIRTASGIAVVAVMCKPHRCPHINMTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRA 141
AKP+RTASGIAVVAVMCKPHRCPH+ MTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRA
Sbjct: 90 AKPVRTASGIAVVAVMCKPHRCPHLAMTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRA 149
Query: 142 IRARYNPYIQTRHRVEQLQQLGHSVDKEWEHVITTGNL 179
IRARYNP++QTRHR++QL++LGH+V+K E +I G
Sbjct: 150 IRARYNPFLQTRHRIDQLKRLGHNVEK-VEFIIMGGTF 186
>sp|O14023|ELP3_SCHPO Probable elongator complex protein 3 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=elp3 PE=3 SV=1
Length = 544
Score = 227 bits (579), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 109/158 (68%), Positives = 128/158 (81%), Gaps = 3/158 (1%)
Query: 24 GEIIQELLVAHKECKDVNLNQMKTRISSKYGLDTSPRLVDIIAAVPAEA--KKILLPKLK 81
EI+ EL+ + + K +NLN +K RIS K+ L SPRL DIIAA+P +A K+ L+ KL+
Sbjct: 15 AEIVAELIASENQNKVINLNALKMRISKKHQLSESPRLTDIIAAIPPDAYLKESLMRKLR 74
Query: 82 AKPIRTASGIAVVAVMCKPHRCPHINMTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRA 141
AKP+RTASGIAVVAVMCKPHRCPHI MTGN+CVYCPGGPDSDFEYSTQSYTGYEPTSMRA
Sbjct: 75 AKPVRTASGIAVVAVMCKPHRCPHIAMTGNVCVYCPGGPDSDFEYSTQSYTGYEPTSMRA 134
Query: 142 IRARYNPYIQTRHRVEQLQQLGHSVDKEWEHVITTGNL 179
IRARY+PY Q R RVEQL+ LGH+VDK E++I G
Sbjct: 135 IRARYDPYEQARGRVEQLRSLGHTVDK-VEYIIMGGTF 171
>sp|Q02908|ELP3_YEAST Elongator complex protein 3 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=ELP3 PE=1 SV=1
Length = 557
Score = 223 bits (568), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 109/165 (66%), Positives = 126/165 (76%), Gaps = 3/165 (1%)
Query: 17 ERTVLTIGEIIQELL--VAHKECKDVNLNQMKTRISSKYGLDTSPRLVDIIAAVPAEAKK 74
ER + +I EL + +++NLN + T+ S KY L PRL DII ++P + KK
Sbjct: 20 ERFIQCCADITLELTDSLTSGTTREINLNGLITKYSKKYKLKQQPRLTDIINSIPDQYKK 79
Query: 75 ILLPKLKAKPIRTASGIAVVAVMCKPHRCPHINMTGNICVYCPGGPDSDFEYSTQSYTGY 134
LLPKLKAKP+RTASGIAVVAVMCKPHRCPHI TGNICVYCPGGPDSDFEYSTQSYTGY
Sbjct: 80 YLLPKLKAKPVRTASGIAVVAVMCKPHRCPHIAYTGNICVYCPGGPDSDFEYSTQSYTGY 139
Query: 135 EPTSMRAIRARYNPYIQTRHRVEQLQQLGHSVDKEWEHVITTGNL 179
EPTSMRAIRARY+PY Q R RVEQL+QLGHS+DK E+V+ G
Sbjct: 140 EPTSMRAIRARYDPYEQARGRVEQLKQLGHSIDK-VEYVLMGGTF 183
>sp|Q7X7L3|ELP3_ORYSJ Elongator complex protein 3 OS=Oryza sativa subsp. japonica GN=ELP3
PE=2 SV=2
Length = 573
Score = 223 bits (567), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 105/169 (62%), Positives = 130/169 (76%), Gaps = 1/169 (0%)
Query: 11 SKLSIDERTVLTIGEIIQELLVAHKECKDVNLNQMKTRISSKYGLDTSPRLVDIIAAVPA 70
+ LS +E V I EI+ + + +DV+LN +K+ +YGL +P+LV++IAAVP
Sbjct: 33 AGLSEEEARVRAIAEIVSAMGELSRRGEDVDLNALKSAACRRYGLARAPKLVEMIAAVPE 92
Query: 71 EAKKILLPKLKAKPIRTASGIAVVAVMCKPHRCPHINMTGNICVYCPGGPDSDFEYSTQS 130
+ LLP+L+AKP+RTASGIAVVAVM KPHRCPHI TGNICVYCPGGPDSDFEYSTQS
Sbjct: 93 ADRAALLPRLRAKPVRTASGIAVVAVMSKPHRCPHIATTGNICVYCPGGPDSDFEYSTQS 152
Query: 131 YTGYEPTSMRAIRARYNPYIQTRHRVEQLQQLGHSVDKEWEHVITTGNL 179
YTGYEPTSMRAIRARYNPY+Q R R++QL++LGHSVDK E ++ G
Sbjct: 153 YTGYEPTSMRAIRARYNPYVQARSRIDQLKRLGHSVDK-VEFILMGGTF 200
>sp|Q93ZR1|ELP3_ARATH Elongator complex protein 3 OS=Arabidopsis thaliana GN=HAG3 PE=1
SV=1
Length = 565
Score = 222 bits (565), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 105/167 (62%), Positives = 130/167 (77%), Gaps = 1/167 (0%)
Query: 13 LSIDERTVLTIGEIIQELLVAHKECKDVNLNQMKTRISSKYGLDTSPRLVDIIAAVPAEA 72
L+ +E V I EI+ ++ ++V+LN +KT KYGL +P+LV++IAA+P
Sbjct: 27 LTEEEARVRAISEIVSTMIERSHRNENVDLNAIKTAACRKYGLARAPKLVEMIAALPDSE 86
Query: 73 KKILLPKLKAKPIRTASGIAVVAVMCKPHRCPHINMTGNICVYCPGGPDSDFEYSTQSYT 132
++ LLPKL+AKP+RTASGIAVVAVM KPHRCPHI TGNICVYCPGGPDSDFEYSTQSYT
Sbjct: 87 RETLLPKLRAKPVRTASGIAVVAVMSKPHRCPHIATTGNICVYCPGGPDSDFEYSTQSYT 146
Query: 133 GYEPTSMRAIRARYNPYIQTRHRVEQLQQLGHSVDKEWEHVITTGNL 179
GYEPTSMRAIRARYNPY+Q R R++QL++LGHSVDK E ++ G
Sbjct: 147 GYEPTSMRAIRARYNPYVQARSRIDQLKRLGHSVDK-VEFILMGGTF 192
>sp|Q58536|Y1136_METJA Uncharacterized protein MJ1136 OS=Methanocaldococcus jannaschii
(strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC
100440) GN=MJ1136 PE=4 SV=1
Length = 541
Score = 115 bits (288), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 62/160 (38%), Positives = 89/160 (55%), Gaps = 13/160 (8%)
Query: 59 PRLVDIIAAVPAEAKKILLPKLKAKPIRTASGIAVVAVMCKPHRCPHINMTGNICVYCPG 118
P +I+ E KKIL+P L+ KP+RT SG+AVVAVM P +CPH C++CPG
Sbjct: 52 PSNSEILQYATEEEKKILIPILRKKPVRTISGVAVVAVMTSPEKCPH-----GKCIFCPG 106
Query: 119 GPDSDFEYSTQSYTGYEPTSMRAIRARYNPYIQTRHRVEQLQQLGHSVDKEWEHVITTGN 178
G S F QSYTG EP +MR + ++PY+QT+ R+EQL+++GH +K E +I G
Sbjct: 107 GVGSVFGDVPQSYTGREPATMRGLMFNFDPYLQTKARIEQLEKVGHPTNK-IELIIMGGT 165
Query: 179 LA------MNWMAPTCPSLWFQINLLSRTQWKKCNQ-GEH 211
+W C ++ S + +K N+ EH
Sbjct: 166 FPARDIEYQDWFIKRCLDAMNGVDASSLEEAQKINETAEH 205
>sp|A5G670|MIAB_GEOUR (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB
OS=Geobacter uraniireducens (strain Rf4) GN=miaB PE=3
SV=1
Length = 440
Score = 34.7 bits (78), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 39/94 (41%), Gaps = 21/94 (22%)
Query: 46 KTRISSKYGLDTSPRLVDIIAAVPAEAKKILLPKLKAKPIRTASGIAVVAVMCKPH---- 101
+ R ++ + D S L+D A +P + I LP AV+A M + +
Sbjct: 233 RIRFTTSHPKDFSQPLIDCFAEIPKLCRHIHLPAQSGSN-------AVLAAMNRGYTREE 285
Query: 102 ----------RCPHINMTGNICVYCPGGPDSDFE 125
CP I +TG+I V PG + DF+
Sbjct: 286 YLGSIARLKAACPSIQITGDIIVGFPGETEEDFQ 319
>sp|B5EE49|MIAB_GEOBB (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB
OS=Geobacter bemidjiensis (strain Bem / ATCC BAA-1014 /
DSM 16622) GN=miaB PE=3 SV=1
Length = 441
Score = 34.7 bits (78), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 37/87 (42%), Gaps = 7/87 (8%)
Query: 46 KTRISSKYGLDTSPRLVDIIAAVPAEAKKILLPKLKAKP---IRTASGIAVVAVMCK--- 99
+ R ++ + D SPRL++ A +P A I LP R G + K
Sbjct: 233 RIRFTTSHPKDMSPRLIECFADLPKLAPHIHLPAQSGSDRVLERMNRGYTAQQYLAKVAA 292
Query: 100 -PHRCPHINMTGNICVYCPGGPDSDFE 125
CP I TG++ V PG ++ F+
Sbjct: 293 LKEACPAIQFTGDMIVGFPGEDEAAFQ 319
>sp|Q88FH2|NUOG_PSEPK NADH-quinone oxidoreductase subunit G OS=Pseudomonas putida (strain
KT2440) GN=nuoG PE=3 SV=1
Length = 904
Score = 33.9 bits (76), Expect = 0.79, Method: Composition-based stats.
Identities = 23/81 (28%), Positives = 37/81 (45%), Gaps = 18/81 (22%)
Query: 56 DTSPRLVDIIAAVPAEAKKILLPKLKAKPIRTASGIAVVAVMCKPHRCPHINMTGNICVY 115
+ +P+L I+ A P+ A +I KL +P+R + A M NI V+
Sbjct: 674 EAAPQLAGIVNAAPSAAFRIKGMKLAREPLRYSGRTA---------------MRANISVH 718
Query: 116 CPGGP---DSDFEYSTQSYTG 133
P P D+ F +S + Y+G
Sbjct: 719 EPRTPQDKDTAFAFSMEGYSG 739
>sp|A0R0S5|RECO_MYCS2 DNA repair protein RecO OS=Mycobacterium smegmatis (strain ATCC
700084 / mc(2)155) GN=recO PE=3 SV=1
Length = 280
Score = 33.5 bits (75), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 37/85 (43%), Gaps = 16/85 (18%)
Query: 100 PHRCPHINMTGNICVYC-PGGP---------------DSDFEYSTQSYTGYEPTSMRAIR 143
PHR H+ G++CV+C P G D D+EY+ S + + I
Sbjct: 164 PHRAFHVAAGGSVCVHCRPSGSSTPPQAVLELMSALHDGDWEYAESSTPPHRSQASGLIA 223
Query: 144 ARYNPYIQTRHRVEQLQQLGHSVDK 168
A +++ + R L + G+ VD+
Sbjct: 224 AHLQWHLERQLRTLPLVERGYRVDR 248
>sp|Q3A594|MIAB_PELCD (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB
OS=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1)
GN=miaB PE=3 SV=1
Length = 438
Score = 33.5 bits (75), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 38/94 (40%), Gaps = 21/94 (22%)
Query: 46 KTRISSKYGLDTSPRLVDIIAAVPAEAKKILLPKLKAKPIRTASGIAVVAVMCKPHR--- 102
+ R + + D S L+D A + K I LP A G AV+ M + +
Sbjct: 231 RIRFMTSHPKDLSDELIDCFADLDKLCKHIHLPV-------QAGGDAVLKAMRRGYTRDQ 283
Query: 103 -----------CPHINMTGNICVYCPGGPDSDFE 125
CP I MT ++ V PG +S+FE
Sbjct: 284 YLGRIERLRRVCPEIRMTSDVIVGFPGETESEFE 317
>sp|Q66647|HELI_EHV2 Probable ATP-dependent helicase 44 OS=Equine herpesvirus 2 (strain
86/87) GN=44 PE=3 SV=1
Length = 789
Score = 32.0 bits (71), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
Query: 30 LLVAHKECKDVNLNQMKTRISSKYGLDTSPRLVDIIAAVPAEAKKILLP 78
L + +K C D + + +Y LD SPR+VD I KIL P
Sbjct: 282 LFINNKRCTDPEFGHLLKTL--EYNLDISPRMVDYIDRFVVPKSKILSP 328
>sp|Q41808|TBG2_MAIZE Tubulin gamma-2 chain OS=Zea mays GN=TUBG2 PE=2 SV=1
Length = 469
Score = 30.4 bits (67), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 21/36 (58%)
Query: 130 SYTGYEPTSMRAIRARYNPYIQTRHRVEQLQQLGHS 165
++ + P S++ +R +PY+QT HRV L H+
Sbjct: 349 NFIDWAPASIQVALSRKSPYVQTTHRVSGLMLANHT 384
>sp|Q41874|TBG3_MAIZE Tubulin gamma-3 chain (Fragment) OS=Zea mays GN=TUBG3 PE=2 SV=1
Length = 421
Score = 30.4 bits (67), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 21/36 (58%)
Query: 130 SYTGYEPTSMRAIRARYNPYIQTRHRVEQLQQLGHS 165
++ + P S++ +R +PY+QT HRV L H+
Sbjct: 301 NFIDWAPASIQVALSRKSPYVQTTHRVSGLMLANHT 336
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.133 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 84,533,869
Number of Sequences: 539616
Number of extensions: 3297474
Number of successful extensions: 7407
Number of sequences better than 100.0: 32
Number of HSP's better than 100.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 7377
Number of HSP's gapped (non-prelim): 33
length of query: 219
length of database: 191,569,459
effective HSP length: 113
effective length of query: 106
effective length of database: 130,592,851
effective search space: 13842842206
effective search space used: 13842842206
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (27.3 bits)