Query psy3055
Match_columns 219
No_of_seqs 126 out of 232
Neff 3.1
Searched_HMMs 46136
Date Sat Aug 17 00:33:30 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3055.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/3055hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2535|consensus 100.0 3.5E-82 7.6E-87 587.4 19.0 189 12-204 15-203 (554)
2 TIGR01211 ELP3 histone acetylt 100.0 6.5E-67 1.4E-71 494.0 15.3 165 26-202 2-166 (522)
3 COG1243 ELP3 Histone acetyltra 100.0 1.7E-65 3.7E-70 482.9 15.3 164 23-202 1-164 (515)
4 PRK08599 coproporphyrinogen II 94.2 0.084 1.8E-06 47.8 5.2 43 156-203 41-83 (377)
5 PRK08207 coproporphyrinogen II 94.1 0.096 2.1E-06 50.4 5.7 121 41-201 123-248 (488)
6 TIGR00538 hemN oxygen-independ 93.2 0.15 3.3E-06 47.7 5.2 34 168-204 102-135 (455)
7 PRK05628 coproporphyrinogen II 89.6 0.57 1.2E-05 42.6 4.8 33 168-203 59-91 (375)
8 PRK08898 coproporphyrinogen II 89.2 0.84 1.8E-05 42.2 5.7 34 168-204 73-106 (394)
9 PRK07379 coproporphyrinogen II 88.7 0.54 1.2E-05 43.6 4.0 33 168-203 66-98 (400)
10 cd01335 Radical_SAM Radical SA 88.7 1.1 2.3E-05 33.9 4.9 16 101-122 5-20 (204)
11 PRK08446 coproporphyrinogen II 87.7 1.3 2.8E-05 40.3 5.7 32 168-202 51-82 (350)
12 smart00729 Elp3 Elongator prot 87.7 1.3 2.7E-05 34.2 4.9 79 95-201 3-81 (216)
13 PRK09058 coproporphyrinogen II 87.5 1 2.2E-05 42.5 5.1 33 168-203 114-146 (449)
14 PRK09249 coproporphyrinogen II 86.5 1.8 4E-05 40.6 6.2 34 168-204 102-135 (453)
15 PRK13347 coproporphyrinogen II 86.3 1.2 2.7E-05 41.9 4.9 34 168-204 103-136 (453)
16 PRK08208 coproporphyrinogen II 86.0 1.9 4.2E-05 40.3 6.1 44 156-203 80-123 (430)
17 TIGR03551 F420_cofH 7,8-dideme 85.9 2.1 4.6E-05 38.7 6.1 45 148-200 71-115 (343)
18 TIGR00539 hemN_rel putative ox 84.1 1.4 3E-05 40.0 4.1 40 159-203 44-83 (360)
19 TIGR01212 radical SAM protein, 83.9 2.5 5.3E-05 38.0 5.5 79 100-199 25-105 (302)
20 PRK05660 HemN family oxidoredu 83.7 2.1 4.6E-05 39.4 5.1 34 168-204 58-91 (378)
21 PRK09057 coproporphyrinogen II 83.6 2.3 5.1E-05 39.0 5.4 34 168-204 55-88 (380)
22 PRK05904 coproporphyrinogen II 83.0 1.6 3.6E-05 40.0 4.1 30 168-200 56-85 (353)
23 PRK09613 thiH thiamine biosynt 82.2 12 0.00026 36.5 9.8 68 102-199 93-160 (469)
24 PF04055 Radical_SAM: Radical 82.0 0.54 1.2E-05 34.9 0.5 54 101-183 5-59 (166)
25 TIGR03700 mena_SCO4494 putativ 79.2 5.4 0.00012 36.4 6.1 75 95-200 50-124 (351)
26 PRK05799 coproporphyrinogen II 79.2 2.9 6.4E-05 37.8 4.3 27 168-197 51-77 (374)
27 TIGR00423 radical SAM domain p 76.7 8 0.00017 34.4 6.3 46 147-200 36-81 (309)
28 PRK08629 coproporphyrinogen II 75.9 5.5 0.00012 37.8 5.3 41 156-203 92-132 (433)
29 PF03470 zf-XS: XS zinc finger 75.0 1.2 2.6E-05 31.0 0.5 12 113-124 1-12 (43)
30 PRK08445 hypothetical protein; 73.6 10 0.00022 35.0 6.3 71 101-202 50-120 (348)
31 PRK14336 (dimethylallyl)adenos 72.7 8.3 0.00018 36.2 5.6 50 145-201 151-200 (418)
32 PRK06294 coproporphyrinogen II 72.6 6.8 0.00015 36.0 4.9 26 171-198 60-85 (370)
33 PF13353 Fer4_12: 4Fe-4S singl 71.6 14 0.0003 28.0 5.7 24 90-122 5-28 (139)
34 PRK14331 (dimethylallyl)adenos 69.9 7 0.00015 36.6 4.5 37 145-189 173-209 (437)
35 TIGR02351 thiH thiazole biosyn 68.8 22 0.00047 32.9 7.3 79 91-200 71-149 (366)
36 PRK09240 thiH thiamine biosynt 68.6 14 0.0003 34.2 6.0 46 148-200 105-150 (371)
37 PRK14453 chloramphenicol/florf 67.9 32 0.00069 32.2 8.2 29 86-120 81-121 (347)
38 TIGR03550 F420_cofG 7,8-dideme 66.6 22 0.00048 32.1 6.8 32 146-183 34-65 (322)
39 COG1060 ThiH Thiamine biosynth 65.8 56 0.0012 31.0 9.5 83 86-199 50-134 (370)
40 PRK06245 cofG FO synthase subu 64.8 24 0.00052 31.6 6.6 32 146-183 40-71 (336)
41 TIGR01579 MiaB-like-C MiaB-lik 64.6 5.2 0.00011 37.0 2.4 52 101-183 146-197 (414)
42 COG1242 Predicted Fe-S oxidore 64.2 5.8 0.00013 37.5 2.7 31 99-129 30-62 (312)
43 PRK08444 hypothetical protein; 61.8 23 0.00051 33.0 6.2 68 101-199 57-124 (353)
44 PF13394 Fer4_14: 4Fe-4S singl 61.4 11 0.00024 28.1 3.3 54 101-181 6-59 (119)
45 TIGR03699 mena_SCO4550 menaqui 60.1 23 0.0005 31.8 5.7 43 148-198 73-115 (340)
46 PRK05926 hypothetical protein; 60.1 21 0.00046 33.4 5.6 78 91-200 64-143 (370)
47 PRK14340 (dimethylallyl)adenos 55.8 19 0.00042 34.2 4.7 49 144-201 175-224 (445)
48 PRK14339 (dimethylallyl)adenos 55.3 24 0.00053 33.1 5.2 34 148-189 157-190 (420)
49 cd06548 GH18_chitinase The GH1 54.8 14 0.00031 33.0 3.4 50 149-202 68-122 (322)
50 PRK07094 biotin synthase; Prov 52.9 48 0.001 29.3 6.4 44 148-199 71-114 (323)
51 PRK15108 biotin synthase; Prov 52.3 94 0.002 28.7 8.4 80 91-201 40-120 (345)
52 TIGR02493 PFLA pyruvate format 51.9 40 0.00086 28.1 5.4 16 96-119 20-35 (235)
53 PF13776 DUF4172: Domain of un 51.1 29 0.00063 26.7 4.2 44 12-55 38-82 (82)
54 TIGR02666 moaA molybdenum cofa 50.9 61 0.0013 28.9 6.8 40 148-197 44-83 (334)
55 PRK07360 FO synthase subunit 2 50.9 31 0.00068 31.9 5.1 54 101-183 68-121 (371)
56 PF08816 Ivy: Inhibitor of ver 48.0 12 0.00027 30.4 1.8 13 93-105 46-58 (118)
57 PRK06582 coproporphyrinogen II 47.7 33 0.00071 32.1 4.8 32 168-202 62-93 (390)
58 TIGR00089 RNA modification enz 47.1 19 0.00041 33.5 3.1 52 101-183 147-198 (429)
59 PF12872 OST-HTH: OST-HTH/LOTU 46.6 75 0.0016 22.0 5.4 50 21-70 4-59 (74)
60 PRK13911 exodeoxyribonuclease 46.1 18 0.0004 31.7 2.7 44 111-178 101-144 (250)
61 cd02872 GH18_chitolectin_chito 45.6 21 0.00045 32.0 3.0 51 149-203 54-110 (362)
62 TIGR03471 HpnJ hopanoid biosyn 45.5 80 0.0017 29.8 7.0 63 93-183 197-259 (472)
63 PRK14326 (dimethylallyl)adenos 44.0 56 0.0012 31.8 5.8 32 146-183 185-216 (502)
64 PRK14327 (dimethylallyl)adenos 43.5 65 0.0014 31.7 6.2 49 145-201 239-289 (509)
65 PRK14466 ribosomal RNA large s 42.8 67 0.0014 30.4 6.0 29 86-120 85-124 (345)
66 TIGR00433 bioB biotin syntheta 42.4 1.9E+02 0.004 25.1 8.3 53 91-164 26-79 (296)
67 PRK00164 moaA molybdenum cofac 41.9 1E+02 0.0023 27.3 6.8 31 147-183 49-79 (331)
68 PRK13361 molybdenum cofactor b 41.8 1E+02 0.0022 27.8 6.7 30 148-183 46-75 (329)
69 TIGR01578 MiaB-like-B MiaB-lik 41.2 46 0.001 31.2 4.7 58 95-183 135-192 (420)
70 PRK14338 (dimethylallyl)adenos 41.2 71 0.0015 30.5 6.0 50 145-201 182-231 (459)
71 PRK00095 mutL DNA mismatch rep 40.7 89 0.0019 31.2 6.8 6 100-105 592-597 (617)
72 PF08901 DUF1847: Protein of u 40.0 1E+02 0.0022 26.7 6.2 70 24-100 7-91 (157)
73 PRK14337 (dimethylallyl)adenos 39.6 1.1E+02 0.0023 29.1 6.9 33 145-183 175-207 (446)
74 PRK14328 (dimethylallyl)adenos 39.5 34 0.00073 32.2 3.5 33 145-183 174-206 (439)
75 TIGR01125 MiaB-like tRNA modif 39.4 51 0.0011 30.8 4.7 56 97-183 139-194 (430)
76 PRK14468 ribosomal RNA large s 37.8 63 0.0014 30.0 4.9 30 85-120 74-114 (343)
77 PRK14325 (dimethylallyl)adenos 37.7 73 0.0016 29.9 5.4 32 146-183 175-206 (444)
78 COG2108 Uncharacterized conser 36.2 16 0.00035 35.1 0.9 56 102-163 37-134 (353)
79 PF11121 DUF2639: Protein of u 34.9 32 0.0007 23.8 1.9 28 156-200 9-39 (40)
80 PRK14862 rimO ribosomal protei 34.8 68 0.0015 30.4 4.8 34 144-183 165-198 (440)
81 PLN02389 biotin synthase 33.2 2.2E+02 0.0047 27.0 7.8 82 91-201 80-162 (379)
82 KOG3041|consensus 32.9 40 0.00087 30.7 2.7 31 86-120 71-111 (225)
83 PRK14330 (dimethylallyl)adenos 32.6 1.1E+02 0.0024 28.7 5.7 60 90-183 140-199 (434)
84 PRK14335 (dimethylallyl)adenos 32.4 75 0.0016 30.3 4.6 32 146-183 180-211 (455)
85 PRK06256 biotin synthase; Vali 30.9 3.9E+02 0.0084 23.9 10.5 55 99-179 64-118 (336)
86 cd01529 4RHOD_Repeats Member o 30.8 66 0.0014 23.1 3.2 20 155-179 72-91 (96)
87 cd00455 nuc_hydro nuc_hydro: N 28.9 25 0.00053 31.4 0.8 15 165-180 135-149 (295)
88 PRK14467 ribosomal RNA large s 28.9 55 0.0012 30.7 3.1 30 85-120 80-120 (348)
89 COG1957 URH1 Inosine-uridine n 28.6 24 0.00052 33.0 0.7 14 168-182 143-156 (311)
90 PRK15441 peptidyl-prolyl cis-t 28.3 1.6E+02 0.0034 21.8 4.9 70 24-98 15-91 (93)
91 PRK14470 ribosomal RNA large s 28.2 1.6E+02 0.0034 27.5 5.9 30 85-120 77-118 (336)
92 TIGR01574 miaB-methiolase tRNA 28.1 1.1E+02 0.0024 28.8 4.9 33 145-183 172-204 (438)
93 PF14090 HTH_39: Helix-turn-he 27.9 38 0.00083 24.3 1.5 21 151-171 29-49 (70)
94 TIGR00238 KamA family protein. 27.9 1.6E+02 0.0035 27.0 5.9 41 151-198 146-186 (331)
95 PF11845 DUF3365: Protein of u 27.9 1.1E+02 0.0024 24.8 4.3 71 42-122 74-158 (188)
96 TIGR02495 NrdG2 anaerobic ribo 27.4 3.3E+02 0.0071 21.9 7.3 22 90-119 15-36 (191)
97 PRK05481 lipoyl synthase; Prov 26.4 2.6E+02 0.0057 25.2 6.8 74 93-202 53-126 (289)
98 PLN02951 Molybderin biosynthes 26.4 1.2E+02 0.0027 28.2 4.9 30 148-183 91-120 (373)
99 PRK14329 (dimethylallyl)adenos 26.3 87 0.0019 30.0 4.0 34 144-183 194-227 (467)
100 PRK14332 (dimethylallyl)adenos 26.0 1.1E+02 0.0023 29.3 4.5 33 145-183 181-213 (449)
101 COG0635 HemN Coproporphyrinoge 25.9 98 0.0021 29.5 4.2 51 147-201 65-117 (416)
102 PRK05927 hypothetical protein; 25.8 1.8E+02 0.0039 27.1 5.8 69 101-200 53-121 (350)
103 PTZ00313 inosine-adenosine-gua 25.6 32 0.00069 31.5 0.9 16 165-181 154-169 (326)
104 cd02651 nuc_hydro_IU_UC_XIUA n 25.3 30 0.00065 30.8 0.7 14 166-180 138-151 (302)
105 TIGR02491 NrdG anaerobic ribon 25.2 3.7E+02 0.008 21.7 7.5 21 89-118 14-34 (154)
106 cd01518 RHOD_YceA Member of th 24.8 89 0.0019 22.6 3.0 20 155-179 77-96 (101)
107 PLN02717 uridine nucleosidase 24.7 31 0.00067 31.4 0.6 16 166-182 141-156 (316)
108 KOG0820|consensus 24.3 64 0.0014 30.7 2.6 55 143-200 174-235 (315)
109 PF01156 IU_nuc_hydro: Inosine 24.2 35 0.00077 30.0 0.9 17 165-182 142-158 (312)
110 PF13000 Acatn: Acetyl-coenzym 24.0 46 0.00099 33.7 1.7 18 191-208 458-475 (544)
111 PRK10768 ribonucleoside hydrol 23.6 34 0.00073 30.8 0.7 15 166-181 140-154 (304)
112 PF01074 Glyco_hydro_38: Glyco 23.5 1.3E+02 0.0028 25.9 4.2 65 134-209 47-111 (275)
113 cd02647 nuc_hydro_TvIAG nuc_hy 23.4 33 0.00071 31.4 0.6 18 164-182 143-160 (312)
114 PRK10443 rihA ribonucleoside h 23.4 35 0.00075 31.0 0.7 17 164-181 139-155 (311)
115 PF11181 YflT: Heat induced st 23.3 95 0.0021 23.6 3.0 24 146-169 6-29 (103)
116 PF12044 Metallopep: Putative 23.1 36 0.00079 33.1 0.8 60 98-167 325-389 (423)
117 PRK14455 ribosomal RNA large s 22.4 4.5E+02 0.0097 24.6 7.7 12 102-119 118-129 (356)
118 cd02654 nuc_hydro_CjNH nuc_hyd 22.2 36 0.00078 31.0 0.6 15 166-181 153-167 (318)
119 cd02653 nuc_hydro_3 NH_3: A su 22.0 36 0.00079 31.0 0.6 16 166-182 137-152 (320)
120 PF10890 DUF2741: Protein of u 22.0 22 0.00048 27.3 -0.7 46 132-201 1-46 (72)
121 COG2973 TrpR Trp operon repres 21.6 1.4E+02 0.003 24.5 3.7 36 47-82 64-101 (103)
122 PRK06267 hypothetical protein; 21.3 4.4E+02 0.0096 24.3 7.4 65 91-180 25-90 (350)
123 cd02650 nuc_hydro_CaPnhB NH_hy 21.0 39 0.00085 30.1 0.5 16 166-182 139-154 (304)
124 PF11784 DUF3320: Protein of u 20.9 2.9E+02 0.0064 19.0 5.0 36 20-58 10-45 (52)
125 PRK14334 (dimethylallyl)adenos 20.7 1.5E+02 0.0032 28.1 4.3 32 146-183 166-197 (440)
126 PRK14333 (dimethylallyl)adenos 20.4 2E+02 0.0043 27.3 5.0 31 147-183 177-207 (448)
127 PRK14463 ribosomal RNA large s 20.1 1.8E+02 0.004 27.1 4.7 29 86-120 85-124 (349)
128 TIGR02109 PQQ_syn_pqqE coenzym 20.0 2E+02 0.0043 25.8 4.8 29 149-183 39-67 (358)
No 1
>KOG2535|consensus
Probab=100.00 E-value=3.5e-82 Score=587.43 Aligned_cols=189 Identities=68% Similarity=1.062 Sum_probs=185.7
Q ss_pred CCChhhHHHHHHHHHHHHHHHHhhccCcccHHHHHHHHHHHcCCCCCCCHHHHHhhCChhHHHhhhhhhhhCCcccccCc
Q psy3055 12 KLSIDERTVLTIGEIIQELLVAHKECKDVNLNQMKTRISSKYGLDTSPRLVDIIAAVPAEAKKILLPKLKAKPIRTASGI 91 (219)
Q Consensus 12 ~~~~~e~~~~~~~eii~~ii~~~~~~~~~~L~~~k~~i~rky~L~~~P~~~dIl~a~p~e~~~~L~~~L~~KPvRT~SGV 91 (219)
+.+..|.++++|.||+.+||++++.++++|||.+|.++|+||+|+..|+++|||+++|+.+++.|+|+|++|||||||||
T Consensus 15 ~~~~~e~~~~~~~ei~~elie~~~~~k~i~ln~~k~~~~~Ky~L~~~PrlvdiIa~vP~~~k~~LlpkLrAKPvRTASGi 94 (554)
T KOG2535|consen 15 SLSPRELFVLAIGEIVKELIEAHEQNKDIDLNALKTKVARKYGLSAQPRLVDIIAAVPPQYKKSLLPKLRAKPVRTASGI 94 (554)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHhCCccCchHHHHHhhCChHHHHhhhHHhccCccccccce
Confidence 57788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEEEeecCCCCCccccCCCceeeCCCCCCCCCCccccccCCCchhhHhHHHhcCCchHhHHHHHHHHHhcCCCCCcccc
Q psy3055 92 AVVAVMCKPHRCPHINMTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRARYNPYIQTRHRVEQLQQLGHSVDKEWE 171 (219)
Q Consensus 92 avVAVMt~P~~CPHi~~tgg~C~yCPggp~~~F~~spqSYtg~EPa~~RA~r~~yDPy~Q~~~Rl~qL~~~GH~vDKv~E 171 (219)
||||||||||+|||||+|||+|+||||||||||+||+|||||+||++|||||++||||+|+|+|++||+++||+|||| |
T Consensus 95 AVVAVMcKPHRCPHIa~TGNiCVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRaRYdP~~QaR~Rv~QLk~LGHsvDKV-E 173 (554)
T KOG2535|consen 95 AVVAVMCKPHRCPHIAFTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRARYDPYLQARGRVEQLKQLGHSVDKV-E 173 (554)
T ss_pred EEEEEecCCCCCCceeccCCEEEECCCCCCccceeecccccCcCcchHHHHHHhcCHHHHHHHHHHHHHHhCCcccee-E
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999999 9
Q ss_pred ceeecCCCccCCCCCCCcHHHHHHHHHHhhccc
Q psy3055 172 HVITTGNLAMNWMAPTCPSLWFQINLLSRTQWK 204 (219)
Q Consensus 172 ~lIvmGGTf~~~~~p~~Yq~~Fi~~~~~al~~~ 204 (219)
+|||||||||+ |++|++.||++||+||+=.
T Consensus 174 -~i~MGGTFMsL--Pe~YRd~FI~nLHdALSGh 203 (554)
T KOG2535|consen 174 -FIVMGGTFMSL--PEEYRDYFIRNLHDALSGH 203 (554)
T ss_pred -EEEecceeecC--hHHHHHHHHHHHHHHhcCC
Confidence 99999999999 9999999999999999743
No 2
>TIGR01211 ELP3 histone acetyltransferase, ELP3 family. The Saccharomyces cerevisiae member YPL086C has been characterized in vitro as an N-terminal acetyltransferase for all four core histones. It is a component of the RNA polymerase II holoenzyme, designated Elp3p for Elongator Protein 3. Members of this family are found in eukaryotes and archaea. These proteins are part of the larger set of GNAT acetyltransferases.
Probab=100.00 E-value=6.5e-67 Score=494.00 Aligned_cols=165 Identities=47% Similarity=0.794 Sum_probs=158.0
Q ss_pred HHHHHHHHhhccCcccHHHHHHHHHHHcCCCCCCCHHHHHhhCChhHHHhhhhhhhhCCcccccCceeEEEeecCCCCCc
Q psy3055 26 IIQELLVAHKECKDVNLNQMKTRISSKYGLDTSPRLVDIIAAVPAEAKKILLPKLKAKPIRTASGIAVVAVMCKPHRCPH 105 (219)
Q Consensus 26 ii~~ii~~~~~~~~~~L~~~k~~i~rky~L~~~P~~~dIl~a~p~e~~~~L~~~L~~KPvRT~SGVavVAVMt~P~~CPH 105 (219)
|++.|++. +..++.+|+++|.++||+|+|+.+|+|+|||+++|+++++.|+++|++|||||+|||||||||||||+|||
T Consensus 2 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~kp~rt~sgv~~v~vm~~p~~cph 80 (522)
T TIGR01211 2 IVDSLLSG-KTRDKEDLEDLKLEVSRKYGLSKVPSNSEILNSAPDEEKKKLEPILRKKPVRTISGVAVVAVMTSPHRCPH 80 (522)
T ss_pred HHHHHhcC-CCCCHHHHHHHHHHHHhhcCCccCCchHHHHhhCCHHHHHHHHHHHhcCCcccccCeEEEEEecCCccCCC
Confidence 56666654 55568899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCceeeCCCCCCCCCCccccccCCCchhhHhHHHhcCCchHhHHHHHHHHHhcCCCCCccccceeecCCCccCCCC
Q psy3055 106 INMTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRARYNPYIQTRHRVEQLQQLGHSVDKEWEHVITTGNLAMNWMA 185 (219)
Q Consensus 106 i~~tgg~C~yCPggp~~~F~~spqSYtg~EPa~~RA~r~~yDPy~Q~~~Rl~qL~~~GH~vDKv~E~lIvmGGTf~~~~~ 185 (219)
|+|+||||||++ | +|||||||+|||+|||++++||||.|+++||+||+++||++||| | +|||||||+++
T Consensus 81 -----~~c~~cp~~~~~-~-~~~~sy~~~ep~~~ra~~~~~dpy~q~~~rl~~l~~~g~~~~kv-E-~i~~GGTft~l-- 149 (522)
T TIGR01211 81 -----GKCLYCPGGPDS-E-NSPQSYTGYEPAAMRGRQNDYDPYEQVTARLEQLEQIGHPVDKV-E-LIIMGGTFPAR-- 149 (522)
T ss_pred -----CceEeCCCCCCc-C-CCCcccCCCCcHhHHHHHcCCCcHHHHHHHHHHHHHhCCCCceE-E-EEEECCCcccC--
Confidence 999999999999 6 79999999999999999999999999999999999999999999 9 99999999999
Q ss_pred CCCcHHHHHHHHHHhhc
Q psy3055 186 PTCPSLWFQINLLSRTQ 202 (219)
Q Consensus 186 p~~Yq~~Fi~~~~~al~ 202 (219)
|.+||+||++.+++|++
T Consensus 150 ~~~y~~~fl~~~~~a~~ 166 (522)
T TIGR01211 150 DLDYQEWFIKRCLNAMN 166 (522)
T ss_pred CHHHHHHHHHHHHHHhc
Confidence 99999999999999984
No 3
>COG1243 ELP3 Histone acetyltransferase [Transcription / Chromatin structure and dynamics]
Probab=100.00 E-value=1.7e-65 Score=482.95 Aligned_cols=164 Identities=47% Similarity=0.787 Sum_probs=157.4
Q ss_pred HHHHHHHHHHHhhccCcccHHHHHHHHHHHcCCCCCCCHHHHHhhCChhHHHhhhhhhhhCCcccccCceeEEEeecCCC
Q psy3055 23 IGEIIQELLVAHKECKDVNLNQMKTRISSKYGLDTSPRLVDIIAAVPAEAKKILLPKLKAKPIRTASGIAVVAVMCKPHR 102 (219)
Q Consensus 23 ~~eii~~ii~~~~~~~~~~L~~~k~~i~rky~L~~~P~~~dIl~a~p~e~~~~L~~~L~~KPvRT~SGVavVAVMt~P~~ 102 (219)
|+||+.+|++. +..++. |+++|.++||||+|+.+|+++|||.++|++++ |+++|++|||||+||||||||||+||+
T Consensus 1 ~~ei~~~~~~g-~~~~~~-l~~~k~~~~r~y~l~~~p~~~dil~~~~~~~~--l~~~lr~KPvRt~sgvaVVaVmt~p~~ 76 (515)
T COG1243 1 CEEIVEELLSG-EIKKKE-LEDLKLEVSRKYGLSKVPRNSDILNAAPPEER--LREILRRKPVRTISGVAVVAVMTSPHG 76 (515)
T ss_pred ChhHHHHHHcc-chhhHH-HHHHHHHHHHHhCcccCCchhHHHHhCChHHH--HHHHHhhcCccccccceEEEEecCCCC
Confidence 68899999987 554444 99999999999999999999999999998887 999999999999999999999999999
Q ss_pred CCccccCCCceeeCCCCCCCCCCccccccCCCchhhHhHHHhcCCchHhHHHHHHHHHhcCCCCCccccceeecCCCccC
Q psy3055 103 CPHINMTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRARYNPYIQTRHRVEQLQQLGHSVDKEWEHVITTGNLAMN 182 (219)
Q Consensus 103 CPHi~~tgg~C~yCPggp~~~F~~spqSYtg~EPa~~RA~r~~yDPy~Q~~~Rl~qL~~~GH~vDKv~E~lIvmGGTf~~ 182 (219)
||| |+|+|||||||. +|||||||+||++|||++|+||||.|+++||+||+.+||++||| | +|||||||+|
T Consensus 77 CPH-----g~CvfCpgg~~~---~spQSytg~ep~~~R~~~~~ydpY~q~~~Rl~qL~~igh~~~Kv-E-liimGGTFta 146 (515)
T COG1243 77 CPH-----GRCVFCPGGPDK---DSPQSYTGEEPAALRAIKNRYDPYEQVRARLKQLETIGHTSDKV-E-LIIMGGTFTA 146 (515)
T ss_pred CCC-----CeEEeCCCCCCC---CCCcccCCCCchhhhHhhccCCcHHHHHHHHHHHHHcCCCcceE-E-EEEecccccC
Confidence 999 999999999984 79999999999999999999999999999999999999999999 9 9999999999
Q ss_pred CCCCCCcHHHHHHHHHHhhc
Q psy3055 183 WMAPTCPSLWFQINLLSRTQ 202 (219)
Q Consensus 183 ~~~p~~Yq~~Fi~~~~~al~ 202 (219)
+ |.+||+|||+.|++|++
T Consensus 147 ~--~~~yqe~Fi~~~~~amn 164 (515)
T COG1243 147 L--SLEYQEWFLKVALKAMN 164 (515)
T ss_pred C--CHHHHHHHHHHHHHhhh
Confidence 9 99999999999999998
No 4
>PRK08599 coproporphyrinogen III oxidase; Provisional
Probab=94.23 E-value=0.084 Score=47.83 Aligned_cols=43 Identities=7% Similarity=-0.019 Sum_probs=29.8
Q ss_pred HHHHHhcCCCCCccccceeecCCCccCCCCCCCcHHHHHHHHHHhhcc
Q psy3055 156 VEQLQQLGHSVDKEWEHVITTGNLAMNWMAPTCPSLWFQINLLSRTQW 203 (219)
Q Consensus 156 l~qL~~~GH~vDKv~E~lIvmGGTf~~~~~p~~Yq~~Fi~~~~~al~~ 203 (219)
++.+...|. .++ +.+.+-|||++.+ +.+.-+.+++.+.+.+.+
T Consensus 41 i~~~~~~~~--~~i-~~i~~gGGtpt~l--~~~~l~~ll~~i~~~~~~ 83 (377)
T PRK08599 41 MNTYAIRPF--DKL-KTIYIGGGTPTAL--SAEQLERLLTAIHRNLPL 83 (377)
T ss_pred HHHhhhcCC--Cce-eEEEeCCCCcccC--CHHHHHHHHHHHHHhCCC
Confidence 444444442 456 6577889999998 888888888888776544
No 5
>PRK08207 coproporphyrinogen III oxidase; Provisional
Probab=94.14 E-value=0.096 Score=50.42 Aligned_cols=121 Identities=14% Similarity=0.354 Sum_probs=70.1
Q ss_pred cHHHHHHHHHHHcCCCCCCCHHHHHhhCChhHHHhhhhhhhhCCcccccCceeEEEeec-CCCCCccccCCCceeeCCCC
Q psy3055 41 NLNQMKTRISSKYGLDTSPRLVDIIAAVPAEAKKILLPKLKAKPIRTASGIAVVAVMCK-PHRCPHINMTGNICVYCPGG 119 (219)
Q Consensus 41 ~L~~~k~~i~rky~L~~~P~~~dIl~a~p~e~~~~L~~~L~~KPvRT~SGVavVAVMt~-P~~CPHi~~tgg~C~yCPgg 119 (219)
+.+.+.+.+.+.|-++ +...+++..+-..+++.|.. .+-+ ++ ++=.+ || || .+|.||.
T Consensus 123 ~~~~~~~~~~~~y~~~--~~k~~l~~~~~~~~~~~~~~----~~~~---~~---sLYihIPF-C~------~~C~YCs-- 181 (488)
T PRK08207 123 SKEEIHKELKEEYLIS--EEKAKLLLEIAKRELSFLLY----RDKN---EV---SIYIGIPF-CP------TRCLYCS-- 181 (488)
T ss_pred CHHHHHHHHHHHhCCC--HHHHHHHHHHHHHHHHhhcc----CCCC---ce---EEEEecCC-CC------CcCCCCC--
Confidence 4566777788888876 66777777666666554421 2212 22 33333 54 99 6999995
Q ss_pred CCCCCCccccccCCCchhhHhHHHhcCCchHhHHHHHHHHHhcCCCC----CccccceeecCCCccCCCCCCCcHHHHHH
Q psy3055 120 PDSDFEYSTQSYTGYEPTSMRAIRARYNPYIQTRHRVEQLQQLGHSV----DKEWEHVITTGNLAMNWMAPTCPSLWFQI 195 (219)
Q Consensus 120 p~~~F~~spqSYtg~EPa~~RA~r~~yDPy~Q~~~Rl~qL~~~GH~v----DKv~E~lIvmGGTf~~~~~p~~Yq~~Fi~ 195 (219)
|...| +.+. +...++|... =+++++..|..+ -+| +.+.+-|||.+.+ +.+.-++++.
T Consensus 182 ----f~s~~--~~~~--------~~~~~~Y~~a--L~~EI~~~~~~~~~~~~~v-~tIyfGGGTPt~L--~~~~L~~Ll~ 242 (488)
T PRK08207 182 ----FPSYP--IKGY--------KGLVEPYLEA--LHYEIEEIGKYLKEKGLKI-TTIYFGGGTPTSL--TAEELERLLE 242 (488)
T ss_pred ----Ccccc--CCCC--------cchHHHHHHH--HHHHHHHHHhhhcccCCce-eEEEEeCCCccCC--CHHHHHHHHH
Confidence 21011 1111 1113444332 355555554433 267 6588889999999 8788777777
Q ss_pred HHHHhh
Q psy3055 196 NLLSRT 201 (219)
Q Consensus 196 ~~~~al 201 (219)
.+.+..
T Consensus 243 ~i~~~f 248 (488)
T PRK08207 243 EIYENF 248 (488)
T ss_pred HHHHhc
Confidence 776543
No 6
>TIGR00538 hemN oxygen-independent coproporphyrinogen III oxidase. This model represents HemN, the oxygen-independent coproporphyrinogen III oxidase that replaces HemF function under anaerobic conditions. Several species, including E. coli, Helicobacter pylori, and Aquifex aeolicus, have both a member of this family and a member of another, closely related family for which there is no evidence of coproporphyrinogen III oxidase activity. Members of this family have a perfectly conserved motif PYRT[SC]YP in a region N-terminal to the region of homology with the related uncharacterized protein.
Probab=93.18 E-value=0.15 Score=47.65 Aligned_cols=34 Identities=3% Similarity=-0.103 Sum_probs=27.6
Q ss_pred ccccceeecCCCccCCCCCCCcHHHHHHHHHHhhccc
Q psy3055 168 KEWEHVITTGNLAMNWMAPTCPSLWFQINLLSRTQWK 204 (219)
Q Consensus 168 Kv~E~lIvmGGTf~~~~~p~~Yq~~Fi~~~~~al~~~ 204 (219)
+| +.|.+.|||++.+ +.++-..++..+.+...|.
T Consensus 102 ~v-~~I~fgGGtP~~l--~~~~l~~ll~~i~~~~~~~ 135 (455)
T TIGR00538 102 HV-SQLHWGGGTPTYL--SPEQISRLMKLIRENFPFN 135 (455)
T ss_pred ce-EEEEECCCCcCCC--CHHHHHHHHHHHHHhCCCC
Confidence 57 6688999999999 8888888888887776553
No 7
>PRK05628 coproporphyrinogen III oxidase; Validated
Probab=89.64 E-value=0.57 Score=42.56 Aligned_cols=33 Identities=6% Similarity=-0.184 Sum_probs=24.8
Q ss_pred ccccceeecCCCccCCCCCCCcHHHHHHHHHHhhcc
Q psy3055 168 KEWEHVITTGNLAMNWMAPTCPSLWFQINLLSRTQW 203 (219)
Q Consensus 168 Kv~E~lIvmGGTf~~~~~p~~Yq~~Fi~~~~~al~~ 203 (219)
.| +.+.+-|||++.+ |.+.-..++..+.+...+
T Consensus 59 ~i-~~i~~GGGTPs~l--~~~~l~~ll~~i~~~~~~ 91 (375)
T PRK05628 59 PV-STVFVGGGTPSLL--GAEGLARVLDAVRDTFGL 91 (375)
T ss_pred ce-eEEEeCCCccccC--CHHHHHHHHHHHHHhCCC
Confidence 35 6577889999999 888888887777665443
No 8
>PRK08898 coproporphyrinogen III oxidase; Provisional
Probab=89.24 E-value=0.84 Score=42.19 Aligned_cols=34 Identities=6% Similarity=-0.065 Sum_probs=28.1
Q ss_pred ccccceeecCCCccCCCCCCCcHHHHHHHHHHhhccc
Q psy3055 168 KEWEHVITTGNLAMNWMAPTCPSLWFQINLLSRTQWK 204 (219)
Q Consensus 168 Kv~E~lIvmGGTf~~~~~p~~Yq~~Fi~~~~~al~~~ 204 (219)
++ +.|.+-|||.+.+ |.+.-...+..+.+.+.|.
T Consensus 73 ~i-~siy~GGGTPs~L--~~~~L~~ll~~i~~~~~~~ 106 (394)
T PRK08898 73 QV-HTVFIGGGTPSLL--SAAGLDRLLSDVRALLPLD 106 (394)
T ss_pred ce-eEEEECCCCcCCC--CHHHHHHHHHHHHHhCCCC
Confidence 56 7688889999999 9888888888887777664
No 9
>PRK07379 coproporphyrinogen III oxidase; Provisional
Probab=88.68 E-value=0.54 Score=43.64 Aligned_cols=33 Identities=12% Similarity=-0.099 Sum_probs=26.3
Q ss_pred ccccceeecCCCccCCCCCCCcHHHHHHHHHHhhcc
Q psy3055 168 KEWEHVITTGNLAMNWMAPTCPSLWFQINLLSRTQW 203 (219)
Q Consensus 168 Kv~E~lIvmGGTf~~~~~p~~Yq~~Fi~~~~~al~~ 203 (219)
.| +.+.+-|||++.+ |.+.-+.++..+.+.+.+
T Consensus 66 ~i-~~iy~GGGTps~l--~~~~l~~ll~~i~~~~~~ 98 (400)
T PRK07379 66 PL-QTVFFGGGTPSLL--SVEQLERILTTLDQRFGI 98 (400)
T ss_pred ce-eEEEECCCccccC--CHHHHHHHHHHHHHhCCC
Confidence 46 6588889999999 888888888888776544
No 10
>cd01335 Radical_SAM Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster. Mechanistically, they share the transfer of a single electron from the iron-sulfur cluster to SAM, which leads to its reductive cleavage to methionine and a 5'-deoxyadenosyl radical, which, in turn, abstracts a hydrogen from the appropriately positioned carbon atom. Depending on the enzyme, SAM is consumed during this process or it is restored and reused. Radical SAM enzymes catalyze steps in metabolism, DNA repair, the biosynthesis of vitamins and coenzymes, and the biosynthesis of many antibiotics. Examples are biotin synthase (BioB), lipoyl synthase (LipA), pyruvate formate-lyase (PFL), coproporphyrinogen oxidase (HemN), lysine 2,3-aminomutase (LAM), anaerobic ribonucleotide reductase (ARR), and MoaA, an enzyme o
Probab=88.66 E-value=1.1 Score=33.93 Aligned_cols=16 Identities=19% Similarity=0.611 Sum_probs=12.5
Q ss_pred CCCCccccCCCceeeCCCCCCC
Q psy3055 101 HRCPHINMTGNICVYCPGGPDS 122 (219)
Q Consensus 101 ~~CPHi~~tgg~C~yCPggp~~ 122 (219)
..|| ..|.||+.....
T Consensus 5 ~~C~------~~C~fC~~~~~~ 20 (204)
T cd01335 5 RGCN------LNCGFCSNPASK 20 (204)
T ss_pred CccC------CcCCCCCCCCCC
Confidence 5799 589999987643
No 11
>PRK08446 coproporphyrinogen III oxidase; Provisional
Probab=87.69 E-value=1.3 Score=40.28 Aligned_cols=32 Identities=13% Similarity=-0.154 Sum_probs=25.5
Q ss_pred ccccceeecCCCccCCCCCCCcHHHHHHHHHHhhc
Q psy3055 168 KEWEHVITTGNLAMNWMAPTCPSLWFQINLLSRTQ 202 (219)
Q Consensus 168 Kv~E~lIvmGGTf~~~~~p~~Yq~~Fi~~~~~al~ 202 (219)
+| +.|.+-|||++.+ |.++-++++..+.+.+.
T Consensus 51 ~v-~~iyfGGGTPs~l--~~~~l~~ll~~i~~~~~ 82 (350)
T PRK08446 51 KI-ESVFIGGGTPSTV--SAKFYEPIFEIISPYLS 82 (350)
T ss_pred ce-eEEEECCCccccC--CHHHHHHHHHHHHHhcC
Confidence 46 5577888999999 99999998888776643
No 12
>smart00729 Elp3 Elongator protein 3, MiaB family, Radical SAM. This superfamily contains MoaA, NifB, PqqE, coproporphyrinogen III oxidase, biotin synthase and MiaB families, and includes a representative in the eukaryotic elongator subunit, Elp-3. Some members of the family are methyltransferases.
Probab=87.68 E-value=1.3 Score=34.20 Aligned_cols=79 Identities=15% Similarity=0.126 Sum_probs=48.9
Q ss_pred EEeecCCCCCccccCCCceeeCCCCCCCCCCccccccCCCchhhHhHHHhcCCchHhHHHHHHHHHhcCCCCCcccccee
Q psy3055 95 AVMCKPHRCPHINMTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRARYNPYIQTRHRVEQLQQLGHSVDKEWEHVI 174 (219)
Q Consensus 95 AVMt~P~~CPHi~~tgg~C~yCPggp~~~F~~spqSYtg~EPa~~RA~r~~yDPy~Q~~~Rl~qL~~~GH~vDKv~E~lI 174 (219)
+++.--..|+| .|.||...... |. -...+..++..-++++...|+..-++ +.+.
T Consensus 3 ~~i~~t~~C~~------~C~yC~~~~~~----------~~---------~~~~~~e~i~~~~~~~~~~~~~~~~~-~~i~ 56 (216)
T smart00729 3 ALYIITRGCPR------RCTFCSFPSAR----------GK---------LRSRYLEALVREIELLAEKGEKEILV-GTVF 56 (216)
T ss_pred cEEEecCchhc------cCCcCCcCccc----------cc---------hhHHHHHHHHHHHHHHHhcccCCcce-eEEE
Confidence 34444568995 79999976421 11 11223456666666776666544444 4378
Q ss_pred ecCCCccCCCCCCCcHHHHHHHHHHhh
Q psy3055 175 TTGNLAMNWMAPTCPSLWFQINLLSRT 201 (219)
Q Consensus 175 vmGGTf~~~~~p~~Yq~~Fi~~~~~al 201 (219)
+.||+.+.. |.++-..+++.+.+..
T Consensus 57 ~~gg~~~~~--~~~~~~~~~~~~~~~~ 81 (216)
T smart00729 57 IGGGTPTLL--SPEQLEELLEAIREIL 81 (216)
T ss_pred ECCCCCCCC--CHHHHHHHHHHHHHhC
Confidence 889999888 6655566777766553
No 13
>PRK09058 coproporphyrinogen III oxidase; Provisional
Probab=87.53 E-value=1 Score=42.54 Aligned_cols=33 Identities=9% Similarity=-0.101 Sum_probs=25.5
Q ss_pred ccccceeecCCCccCCCCCCCcHHHHHHHHHHhhcc
Q psy3055 168 KEWEHVITTGNLAMNWMAPTCPSLWFQINLLSRTQW 203 (219)
Q Consensus 168 Kv~E~lIvmGGTf~~~~~p~~Yq~~Fi~~~~~al~~ 203 (219)
.+ +.|.+-|||.+.+ +.+.-...+..+.+.+.+
T Consensus 114 ~i-~~iy~GGGTPs~L--~~~~l~~ll~~i~~~~~l 146 (449)
T PRK09058 114 PI-HAVYFGGGTPTAL--SAEDLARLITALREYLPL 146 (449)
T ss_pred ee-eEEEECCCccccC--CHHHHHHHHHHHHHhCCC
Confidence 46 7688999999999 888877777777665543
No 14
>PRK09249 coproporphyrinogen III oxidase; Provisional
Probab=86.53 E-value=1.8 Score=40.64 Aligned_cols=34 Identities=6% Similarity=-0.111 Sum_probs=27.0
Q ss_pred ccccceeecCCCccCCCCCCCcHHHHHHHHHHhhccc
Q psy3055 168 KEWEHVITTGNLAMNWMAPTCPSLWFQINLLSRTQWK 204 (219)
Q Consensus 168 Kv~E~lIvmGGTf~~~~~p~~Yq~~Fi~~~~~al~~~ 204 (219)
+| +.+.+-|||.+.+ |.+.-+.++..+-+.+.|.
T Consensus 102 ~v-~~i~~gGGtPs~l--~~~~l~~ll~~l~~~~~~~ 135 (453)
T PRK09249 102 PV-SQLHWGGGTPTFL--SPEQLRRLMALLREHFNFA 135 (453)
T ss_pred ce-EEEEECCcccccC--CHHHHHHHHHHHHHhCCCC
Confidence 46 6588999999998 8888888888887776553
No 15
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=86.29 E-value=1.2 Score=41.88 Aligned_cols=34 Identities=6% Similarity=-0.083 Sum_probs=26.7
Q ss_pred ccccceeecCCCccCCCCCCCcHHHHHHHHHHhhccc
Q psy3055 168 KEWEHVITTGNLAMNWMAPTCPSLWFQINLLSRTQWK 204 (219)
Q Consensus 168 Kv~E~lIvmGGTf~~~~~p~~Yq~~Fi~~~~~al~~~ 204 (219)
+| +.+.+-|||++.+ |.+.-+.++..+.+...|.
T Consensus 103 ~v-~~i~fgGGTPs~l--~~~~l~~ll~~i~~~~~~~ 136 (453)
T PRK13347 103 RV-SQLHWGGGTPTIL--NPDQFERLMAALRDAFDFA 136 (453)
T ss_pred eE-EEEEEcCcccccC--CHHHHHHHHHHHHHhCCCC
Confidence 57 6588899999999 8888888888777765543
No 16
>PRK08208 coproporphyrinogen III oxidase; Validated
Probab=86.04 E-value=1.9 Score=40.31 Aligned_cols=44 Identities=7% Similarity=-0.133 Sum_probs=29.6
Q ss_pred HHHHHhcCCCCCccccceeecCCCccCCCCCCCcHHHHHHHHHHhhcc
Q psy3055 156 VEQLQQLGHSVDKEWEHVITTGNLAMNWMAPTCPSLWFQINLLSRTQW 203 (219)
Q Consensus 156 l~qL~~~GH~vDKv~E~lIvmGGTf~~~~~p~~Yq~~Fi~~~~~al~~ 203 (219)
++++...+... ++ +.+.+.|||.+.+ +.+.-++++..+.+...+
T Consensus 80 i~~~~~~~~~~-~i-~~i~~GGGTPs~l--~~~~l~~Ll~~i~~~~~~ 123 (430)
T PRK08208 80 AEQVAEALAPA-RF-ASFAVGGGTPTLL--NAAELEKLFDSVERVLGV 123 (430)
T ss_pred HHHHHHHcCCC-ce-eEEEEcCCccccC--CHHHHHHHHHHHHHhCCC
Confidence 44444333332 35 4488899999988 888888888877766543
No 17
>TIGR03551 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit. This enzyme, together with CofG, complete the biosynthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, the chromophore of coenzyme F420. The chromophore is also used in cyanobacteria DNA photolyases.
Probab=85.92 E-value=2.1 Score=38.74 Aligned_cols=45 Identities=11% Similarity=0.034 Sum_probs=34.0
Q ss_pred chHhHHHHHHHHHhcCCCCCccccceeecCCCccCCCCCCCcHHHHHHHHHHh
Q psy3055 148 PYIQTRHRVEQLQQLGHSVDKEWEHVITTGNLAMNWMAPTCPSLWFQINLLSR 200 (219)
Q Consensus 148 Py~Q~~~Rl~qL~~~GH~vDKv~E~lIvmGGTf~~~~~p~~Yq~~Fi~~~~~a 200 (219)
+..|+...++++.+.| +.. +.+.||+.+.+ +.+|-..+++.+-+.
T Consensus 71 s~eeI~e~~~~~~~~G--~~~----i~l~gG~~p~~--~~~~~~~i~~~Ik~~ 115 (343)
T TIGR03551 71 SLEEIAERAAEAWKAG--ATE----VCIQGGIHPDL--DGDFYLDILRAVKEE 115 (343)
T ss_pred CHHHHHHHHHHHHHCC--CCE----EEEEeCCCCCC--CHHHHHHHHHHHHHH
Confidence 5678999999999988 444 44559988777 777777777777665
No 18
>TIGR00539 hemN_rel putative oxygen-independent coproporphyrinogen III oxidase. Experimentally determined examples of oxygen-independent coproporphyrinogen III oxidase, an enzyme that replaces HemF function under anaerobic conditions, belong to a family of proteins described by the model hemN. This model, hemN_rel, models a closely related protein, shorter at the amino end and lacking the region containing the motif PYRT[SC]YP found in members of the hemN family. Several species, including E. coli, Helicobacter pylori, Aquifex aeolicus, and Chlamydia trachomatis, have members of both this family and the E. coli hemN family. The member of this family from Bacillus subtilis was shown to complement an hemF/hemN double mutant of Salmonella typimurium and to prevent accumulation of coproporphyrinogen III under anaerobic conditions, but the exact role of this protein is still uncertain. It is found in a number of species that do not synthesize heme de novo.
Probab=84.06 E-value=1.4 Score=39.95 Aligned_cols=40 Identities=10% Similarity=0.064 Sum_probs=27.2
Q ss_pred HHhcCCCCCccccceeecCCCccCCCCCCCcHHHHHHHHHHhhcc
Q psy3055 159 LQQLGHSVDKEWEHVITTGNLAMNWMAPTCPSLWFQINLLSRTQW 203 (219)
Q Consensus 159 L~~~GH~vDKv~E~lIvmGGTf~~~~~p~~Yq~~Fi~~~~~al~~ 203 (219)
+...|. -+| +.|.+-|||.+.+ |.+.-+.++..+.+.+++
T Consensus 44 ~~~~~~--~~v-~~i~~GGGtPs~l--~~~~l~~ll~~i~~~~~~ 83 (360)
T TIGR00539 44 LSQTDQ--EPL-ESIFIGGGTPNTL--SVEAFERLFESIYQHASL 83 (360)
T ss_pred HHhcCC--Ccc-cEEEeCCCchhcC--CHHHHHHHHHHHHHhCCC
Confidence 344452 246 6578889999998 777777777766655544
No 19
>TIGR01212 radical SAM protein, TIGR01212 family. This uncharacterized protein family shows significant similarity to TIGR01211, a longer protein that is a histone acetyltransferase at its C-terminus and is a subunit of RNA polymerase II (in yeast). This family lacks the GNAT acetyltransferase domain.
Probab=83.91 E-value=2.5 Score=37.97 Aligned_cols=79 Identities=19% Similarity=0.207 Sum_probs=47.2
Q ss_pred CCCCCccccC--CCceeeCCCCCCCCCCccccccCCCchhhHhHHHhcCCchHhHHHHHHHHHhcCCCCCccccceeecC
Q psy3055 100 PHRCPHINMT--GNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRARYNPYIQTRHRVEQLQQLGHSVDKEWEHVITTG 177 (219)
Q Consensus 100 P~~CPHi~~t--gg~C~yCPggp~~~F~~spqSYtg~EPa~~RA~r~~yDPy~Q~~~Rl~qL~~~GH~vDKv~E~lIvmG 177 (219)
.+.||..+-| .|-|+||...-+.+|. .| |. +..-+--.|...-++.+.. ..+. . +.+-|
T Consensus 25 g~~cpnrdg~~~~~gC~FC~~~~~~~~~-~~--~~----------~~~~~i~~qi~~~~~~~~~----~~~~-~-iyf~g 85 (302)
T TIGR01212 25 GFSCPNRDGTKGRGGCTFCNDASRPIFA-DE--YT----------QARIPIKEQIKKQMKKYKK----DKKF-I-AYFQA 85 (302)
T ss_pred CCCCCCCCCCCCCCCcccCCCCCCcccc-cc--cc----------ccCCCHHHHHHHHHHHhhc----cCEE-E-EEEEC
Confidence 7899986643 3689999887655552 00 10 0111223344444444332 2344 4 77889
Q ss_pred CCccCCCCCCCcHHHHHHHHHH
Q psy3055 178 NLAMNWMAPTCPSLWFQINLLS 199 (219)
Q Consensus 178 GTf~~~~~p~~Yq~~Fi~~~~~ 199 (219)
||.+.+ |.+.....+..+.+
T Consensus 86 gt~t~l--~~~~L~~l~~~i~~ 105 (302)
T TIGR01212 86 YTNTYA--PVEVLKEMYEQALS 105 (302)
T ss_pred CCcCCC--CHHHHHHHHHHHhC
Confidence 999988 88887777666654
No 20
>PRK05660 HemN family oxidoreductase; Provisional
Probab=83.70 E-value=2.1 Score=39.38 Aligned_cols=34 Identities=6% Similarity=0.047 Sum_probs=27.4
Q ss_pred ccccceeecCCCccCCCCCCCcHHHHHHHHHHhhccc
Q psy3055 168 KEWEHVITTGNLAMNWMAPTCPSLWFQINLLSRTQWK 204 (219)
Q Consensus 168 Kv~E~lIvmGGTf~~~~~p~~Yq~~Fi~~~~~al~~~ 204 (219)
+| +.|.+-|||.+.+ |.+.-.+++..+.+.+.+.
T Consensus 58 ~v-~ti~~GGGtPs~l--~~~~l~~ll~~l~~~~~~~ 91 (378)
T PRK05660 58 EV-HSIFIGGGTPSLF--SAEAIQRLLDGVRARLPFA 91 (378)
T ss_pred ce-eEEEeCCCccccC--CHHHHHHHHHHHHHhCCCC
Confidence 56 6688999999999 8888888888877766664
No 21
>PRK09057 coproporphyrinogen III oxidase; Provisional
Probab=83.63 E-value=2.3 Score=39.04 Aligned_cols=34 Identities=3% Similarity=-0.208 Sum_probs=27.4
Q ss_pred ccccceeecCCCccCCCCCCCcHHHHHHHHHHhhccc
Q psy3055 168 KEWEHVITTGNLAMNWMAPTCPSLWFQINLLSRTQWK 204 (219)
Q Consensus 168 Kv~E~lIvmGGTf~~~~~p~~Yq~~Fi~~~~~al~~~ 204 (219)
++ +.|.+-|||.+.+ |.+.-+..+..+.+.+.|.
T Consensus 55 ~i-~tiy~GGGTPs~l--~~~~L~~ll~~i~~~f~~~ 88 (380)
T PRK09057 55 TL-TSIFFGGGTPSLM--QPETVAALLDAIARLWPVA 88 (380)
T ss_pred Cc-CeEEeCCCccccC--CHHHHHHHHHHHHHhCCCC
Confidence 46 7688999999999 8888888888887766554
No 22
>PRK05904 coproporphyrinogen III oxidase; Provisional
Probab=82.97 E-value=1.6 Score=40.03 Aligned_cols=30 Identities=3% Similarity=-0.167 Sum_probs=22.1
Q ss_pred ccccceeecCCCccCCCCCCCcHHHHHHHHHHh
Q psy3055 168 KEWEHVITTGNLAMNWMAPTCPSLWFQINLLSR 200 (219)
Q Consensus 168 Kv~E~lIvmGGTf~~~~~p~~Yq~~Fi~~~~~a 200 (219)
++ +.+.+-|||.+.+ |.+.-+..+..+.+.
T Consensus 56 ~~-~tiy~GGGTPs~L--~~~~l~~ll~~i~~~ 85 (353)
T PRK05904 56 QF-KTIYLGGGTPNCL--NDQLLDILLSTIKPY 85 (353)
T ss_pred Ce-EEEEECCCccccC--CHHHHHHHHHHHHHh
Confidence 35 6688899999999 877766666655544
No 23
>PRK09613 thiH thiamine biosynthesis protein ThiH; Reviewed
Probab=82.19 E-value=12 Score=36.45 Aligned_cols=68 Identities=22% Similarity=0.274 Sum_probs=41.4
Q ss_pred CCCccccCCCceeeCCCCCCCCCCccccccCCCchhhHhHHHhcCCchHhHHHHHHHHHhcCCCCCccccceeecCCCcc
Q psy3055 102 RCPHINMTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRARYNPYIQTRHRVEQLQQLGHSVDKEWEHVITTGNLAM 181 (219)
Q Consensus 102 ~CPHi~~tgg~C~yCPggp~~~F~~spqSYtg~EPa~~RA~r~~yDPy~Q~~~Rl~qL~~~GH~vDKv~E~lIvmGGTf~ 181 (219)
-|+ ++|.||.-..++. ....| .=+-.++...++.+.+.||. -+ +||.|..-.
T Consensus 93 ~C~------n~C~YCgfs~~n~---~i~r~--------------~Ls~EEI~~ea~~~~~~G~~--~i---~LvsGe~p~ 144 (469)
T PRK09613 93 YCV------NNCVYCGFRRSNK---EIKRK--------------KLTQEEIREEVKALEDMGHK--RL---ALVAGEDPP 144 (469)
T ss_pred CCC------CCCccCCCccCCC---CCCce--------------ECCHHHHHHHHHHHHHCCCC--EE---EEEeCCCCC
Confidence 599 9999998543221 01111 12556888889999999974 22 455444335
Q ss_pred CCCCCCCcHHHHHHHHHH
Q psy3055 182 NWMAPTCPSLWFQINLLS 199 (219)
Q Consensus 182 ~~~~p~~Yq~~Fi~~~~~ 199 (219)
.. +.+|-.+-|+.+++
T Consensus 145 ~~--~~eyi~e~i~~I~~ 160 (469)
T PRK09613 145 NC--DIEYILESIKTIYS 160 (469)
T ss_pred CC--CHHHHHHHHHHHHH
Confidence 55 66666666666554
No 24
>PF04055 Radical_SAM: Radical SAM superfamily; InterPro: IPR007197 Radical SAM proteins catalyze diverse reactions, including unusual methylations, isomerization, sulphur insertion, ring formation, anaerobic oxidation and protein radical formation. Evidence exists that these proteins generate a radical species by reductive cleavage of S:-adenosylmethionine (SAM) through an unusual Fe-S centre [, ].; GO: 0003824 catalytic activity, 0051536 iron-sulfur cluster binding; PDB: 2A5H_D 3T7V_A 3C8F_A 3CB8_A 2FB2_A 2FB3_A 3CIX_A 3IIX_A 3IIZ_A 3CIW_A ....
Probab=82.04 E-value=0.54 Score=34.85 Aligned_cols=54 Identities=15% Similarity=0.188 Sum_probs=31.6
Q ss_pred CCCCccccCCCceeeCCCCCCCCCCccccccCCCchhhHhHHHhcCCchHhHHHHHHHH-HhcCCCCCccccceeecCCC
Q psy3055 101 HRCPHINMTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRARYNPYIQTRHRVEQL-QQLGHSVDKEWEHVITTGNL 179 (219)
Q Consensus 101 ~~CPHi~~tgg~C~yCPggp~~~F~~spqSYtg~EPa~~RA~r~~yDPy~Q~~~Rl~qL-~~~GH~vDKv~E~lIvmGGT 179 (219)
-.|| ..|.||+....... ..+ ..-+-.|+...++.+ ...| + +.+++.||.
T Consensus 5 ~~C~------~~C~fC~~~~~~~~-~~~----------------~~~~~e~i~~~~~~~~~~~~-----~-~~i~~~~ge 55 (166)
T PF04055_consen 5 RGCN------LNCSFCYYPRSRRK-NKP----------------REMSPEEILEEIKELKQDKG-----V-KEIFFGGGE 55 (166)
T ss_dssp SEES------S--TTTSTTTTCCT-CGC----------------EECHHHHHHHHHHHHHHHTT-----H-EEEEEESST
T ss_pred cCcC------ccCCCCCCCccCCC-ccc----------------ccCCHHHHHHHHHHHhHhcC-----C-cEEEEeecC
Confidence 3699 58999998763100 111 122345777788888 4555 2 327778888
Q ss_pred ccCC
Q psy3055 180 AMNW 183 (219)
Q Consensus 180 f~~~ 183 (219)
++..
T Consensus 56 p~~~ 59 (166)
T PF04055_consen 56 PTLH 59 (166)
T ss_dssp GGGS
T ss_pred CCcc
Confidence 8887
No 25
>TIGR03700 mena_SCO4494 putative menaquinone biosynthesis protein, SCO4494 family. Members of this protein family appear to be involved in menaquinone biosynthesis by an alternate pathway via futalosine, based on close phylogenetic correlation with known markers of the futalosine pathway, gene clustering in many organisms, and paralogy with the SCO4550 protein.
Probab=79.20 E-value=5.4 Score=36.38 Aligned_cols=75 Identities=21% Similarity=0.216 Sum_probs=49.3
Q ss_pred EEeecCCCCCccccCCCceeeCCCCCCCCCCccccccCCCchhhHhHHHhcCCchHhHHHHHHHHHhcCCCCCcccccee
Q psy3055 95 AVMCKPHRCPHINMTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRARYNPYIQTRHRVEQLQQLGHSVDKEWEHVI 174 (219)
Q Consensus 95 AVMt~P~~CPHi~~tgg~C~yCPggp~~~F~~spqSYtg~EPa~~RA~r~~yDPy~Q~~~Rl~qL~~~GH~vDKv~E~lI 174 (219)
.++-.---|+ ++|.||.-.... ..+..| ..| ..++...+++..+.|- . | +.
T Consensus 50 ~~in~Tn~C~------~~C~FCa~~~~~---~~~~~y-------------~l~-~eeI~~~a~~~~~~G~--~---~-v~ 100 (351)
T TIGR03700 50 RHLNYTNICV------NGCAFCAFQRER---GEPGAY-------------AMS-LEEIVARVKEAYAPGA--T---E-VH 100 (351)
T ss_pred CCcccccccc------cCCccCceeCCC---CCcccC-------------CCC-HHHHHHHHHHHHHCCC--c---E-EE
Confidence 3455557899 799999754322 123344 243 4888888998888883 3 3 45
Q ss_pred ecCCCccCCCCCCCcHHHHHHHHHHh
Q psy3055 175 TTGNLAMNWMAPTCPSLWFQINLLSR 200 (219)
Q Consensus 175 vmGGTf~~~~~p~~Yq~~Fi~~~~~a 200 (219)
+.||....+ +.+|-...++.+-+.
T Consensus 101 l~~G~~p~~--~~~~~~e~i~~Ik~~ 124 (351)
T TIGR03700 101 IVGGLHPNL--PFEWYLDMIRTLKEA 124 (351)
T ss_pred EecCCCCCC--CHHHHHHHHHHHHHH
Confidence 558887776 767767777777554
No 26
>PRK05799 coproporphyrinogen III oxidase; Provisional
Probab=79.16 E-value=2.9 Score=37.83 Aligned_cols=27 Identities=7% Similarity=0.015 Sum_probs=18.2
Q ss_pred ccccceeecCCCccCCCCCCCcHHHHHHHH
Q psy3055 168 KEWEHVITTGNLAMNWMAPTCPSLWFQINL 197 (219)
Q Consensus 168 Kv~E~lIvmGGTf~~~~~p~~Yq~~Fi~~~ 197 (219)
.+ +.+.+-|||++.+ +.++-+.+...+
T Consensus 51 ~~-~~i~~gGGtps~l--~~~~l~~L~~~i 77 (374)
T PRK05799 51 KI-KSIFIGGGTPTYL--SLEALEILKETI 77 (374)
T ss_pred ce-eEEEECCCcccCC--CHHHHHHHHHHH
Confidence 35 5477889999988 776655444433
No 27
>TIGR00423 radical SAM domain protein, CofH subfamily. This protein family includes the CofH protein of coenzyme F(420) biosynthesis from Methanocaldococcus jannaschii, but appears to hit genomes more broadly than just the subset that make coenzyme F(420), so that narrower group is being built as a separate family.
Probab=76.69 E-value=8 Score=34.45 Aligned_cols=46 Identities=13% Similarity=-0.005 Sum_probs=32.0
Q ss_pred CchHhHHHHHHHHHhcCCCCCccccceeecCCCccCCCCCCCcHHHHHHHHHHh
Q psy3055 147 NPYIQTRHRVEQLQQLGHSVDKEWEHVITTGNLAMNWMAPTCPSLWFQINLLSR 200 (219)
Q Consensus 147 DPy~Q~~~Rl~qL~~~GH~vDKv~E~lIvmGGTf~~~~~p~~Yq~~Fi~~~~~a 200 (219)
=+..++...+++..+.|. + | +.+.||..+.. +.+|-..+++.+-+.
T Consensus 36 ls~eeI~~~~~~~~~~G~--~---~-i~l~gg~~~~~--~~~~~~~i~~~Ik~~ 81 (309)
T TIGR00423 36 LSLEEILEKVKEAVAKGA--T---E-VCIQGGLNPQL--DIEYYEELFRAIKQE 81 (309)
T ss_pred CCHHHHHHHHHHHHHCCC--C---E-EEEecCCCCCC--CHHHHHHHHHHHHHH
Confidence 366899999999988884 3 3 44558887766 666666666666543
No 28
>PRK08629 coproporphyrinogen III oxidase; Provisional
Probab=75.92 E-value=5.5 Score=37.81 Aligned_cols=41 Identities=12% Similarity=-0.079 Sum_probs=22.4
Q ss_pred HHHHHhcCCCCCccccceeecCCCccCCCCCCCcHHHHHHHHHHhhcc
Q psy3055 156 VEQLQQLGHSVDKEWEHVITTGNLAMNWMAPTCPSLWFQINLLSRTQW 203 (219)
Q Consensus 156 l~qL~~~GH~vDKv~E~lIvmGGTf~~~~~p~~Yq~~Fi~~~~~al~~ 203 (219)
++.+.+.|- ++ +.+.+=|||.+.. | +--.+.+..+.+...+
T Consensus 92 i~~~~~~~~---~~-~siy~GGGTPs~l--~-~~L~~ll~~i~~~f~i 132 (433)
T PRK08629 92 MEMVKELGY---DF-ESMYVGGGTTTIL--E-DELAKTLELAKKLFSI 132 (433)
T ss_pred HHHHHhcCC---ce-EEEEECCCccccC--H-HHHHHHHHHHHHhCCC
Confidence 555555553 45 6566778888765 5 3344444444443333
No 29
>PF03470 zf-XS: XS zinc finger domain; InterPro: IPR005381 This domain is a putative nucleic acid binding zinc finger and is found at the N terminus of proteins that also contain an adjacent XS domain IPR005380 from INTERPRO and in some proteins a C-terminal XH domain IPR005379 from INTERPRO.
Probab=74.97 E-value=1.2 Score=31.04 Aligned_cols=12 Identities=42% Similarity=1.367 Sum_probs=9.6
Q ss_pred eeeCCCCCCCCC
Q psy3055 113 CVYCPGGPDSDF 124 (219)
Q Consensus 113 C~yCPggp~~~F 124 (219)
|.||||++..||
T Consensus 1 CP~C~~kkk~~Y 12 (43)
T PF03470_consen 1 CPFCPGKKKQDY 12 (43)
T ss_pred CCCCCCCCCcce
Confidence 779999987654
No 30
>PRK08445 hypothetical protein; Provisional
Probab=73.58 E-value=10 Score=35.01 Aligned_cols=71 Identities=11% Similarity=0.210 Sum_probs=50.4
Q ss_pred CCCCccccCCCceeeCCCCCCCCCCccccccCCCchhhHhHHHhcCCchHhHHHHHHHHHhcCCCCCccccceeecCCCc
Q psy3055 101 HRCPHINMTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRARYNPYIQTRHRVEQLQQLGHSVDKEWEHVITTGNLA 180 (219)
Q Consensus 101 ~~CPHi~~tgg~C~yCPggp~~~F~~spqSYtg~EPa~~RA~r~~yDPy~Q~~~Rl~qL~~~GH~vDKv~E~lIvmGGTf 180 (219)
--|| ++|.||--.... ..+..|. . +..++...+++.++.|.. | +.+.||--
T Consensus 50 n~C~------~~C~FCa~~~~~---~~~~~y~-------------l-~~eeI~~~~~~a~~~g~~-----~-i~~~gg~~ 100 (348)
T PRK08445 50 NICW------VDCKFCAFYRHL---KEDDAYI-------------L-SFEEIDKKIEELLAIGGT-----Q-ILFQGGVH 100 (348)
T ss_pred cccc------cCCccCCCccCC---CCCCCee-------------C-CHHHHHHHHHHHHHcCCC-----E-EEEecCCC
Confidence 4687 699999643322 1223331 2 447888999999999953 6 77888888
Q ss_pred cCCCCCCCcHHHHHHHHHHhhc
Q psy3055 181 MNWMAPTCPSLWFQINLLSRTQ 202 (219)
Q Consensus 181 ~~~~~p~~Yq~~Fi~~~~~al~ 202 (219)
..+ +.+|-.+.++.+-++..
T Consensus 101 ~~~--~~e~~~~l~~~Ik~~~p 120 (348)
T PRK08445 101 PKL--KIEWYENLVSHIAQKYP 120 (348)
T ss_pred CCC--CHHHHHHHHHHHHHHCC
Confidence 888 88888888887777654
No 31
>PRK14336 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=72.67 E-value=8.3 Score=36.17 Aligned_cols=50 Identities=18% Similarity=0.167 Sum_probs=33.1
Q ss_pred cCCchHhHHHHHHHHHhcCCCCCccccceeecCCCccCCCCCCCcHHHHHHHHHHhh
Q psy3055 145 RYNPYIQTRHRVEQLQQLGHSVDKEWEHVITTGNLAMNWMAPTCPSLWFQINLLSRT 201 (219)
Q Consensus 145 ~yDPy~Q~~~Rl~qL~~~GH~vDKv~E~lIvmGGTf~~~~~p~~Yq~~Fi~~~~~al 201 (219)
+.-|..++..-++.|.+.|.. | +.+.|.+|.+|..+.....+| .++++++
T Consensus 151 rsrs~e~Iv~Ei~~l~~~G~~-----e-i~l~~~~~~~yg~d~~~~~~l-~~Ll~~l 200 (418)
T PRK14336 151 KSRSIAEIGCEVAELVRRGSR-----E-VVLLGQNVDSYGHDLPEKPCL-ADLLSAL 200 (418)
T ss_pred ccCCHHHHHHHHHHHHHCCCe-----E-EEEEecCccccccCCCCcccH-HHHHHHH
Confidence 456788898999999887742 6 888999999883322223343 3455443
No 32
>PRK06294 coproporphyrinogen III oxidase; Provisional
Probab=72.65 E-value=6.8 Score=36.01 Aligned_cols=26 Identities=15% Similarity=-0.013 Sum_probs=19.1
Q ss_pred cceeecCCCccCCCCCCCcHHHHHHHHH
Q psy3055 171 EHVITTGNLAMNWMAPTCPSLWFQINLL 198 (219)
Q Consensus 171 E~lIvmGGTf~~~~~p~~Yq~~Fi~~~~ 198 (219)
+.+.+-|||.+.+ |.+.-+.++..+.
T Consensus 60 ~~iy~GGGTPs~l--~~~~l~~ll~~i~ 85 (370)
T PRK06294 60 DTVFFGGGTPSLV--PPALIQDILKTLE 85 (370)
T ss_pred eEEEECCCccccC--CHHHHHHHHHHHH
Confidence 6578889999999 7776666555543
No 33
>PF13353 Fer4_12: 4Fe-4S single cluster domain; PDB: 3C8F_A 3CB8_A 3T7V_A 2YX0_A 3CAN_A.
Probab=71.64 E-value=14 Score=27.97 Aligned_cols=24 Identities=33% Similarity=0.607 Sum_probs=10.6
Q ss_pred CceeEEEeecCCCCCccccCCCceeeCCCCCCC
Q psy3055 90 GIAVVAVMCKPHRCPHINMTGNICVYCPGGPDS 122 (219)
Q Consensus 90 GVavVAVMt~P~~CPHi~~tgg~C~yCPggp~~ 122 (219)
|+.++ +.+.- |++ .|.||...-..
T Consensus 5 g~~~~-~~t~~--Cnl------~C~yC~~~~~~ 28 (139)
T PF13353_consen 5 GIRVV-LFTNG--CNL------RCKYCFNSEIW 28 (139)
T ss_dssp SCEEE-EEEC----SB--------TT-TTCCCS
T ss_pred CEEEE-EEcCc--ccc------cCcCcCCcccC
Confidence 55443 33443 995 99999875433
No 34
>PRK14331 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=69.94 E-value=7 Score=36.64 Aligned_cols=37 Identities=16% Similarity=0.050 Sum_probs=29.5
Q ss_pred cCCchHhHHHHHHHHHhcCCCCCccccceeecCCCccCCCCCCCc
Q psy3055 145 RYNPYIQTRHRVEQLQQLGHSVDKEWEHVITTGNLAMNWMAPTCP 189 (219)
Q Consensus 145 ~yDPy~Q~~~Rl~qL~~~GH~vDKv~E~lIvmGGTf~~~~~p~~Y 189 (219)
++.|...+-.-++.|.+.|.. | +.+.|.+|++| +.+.
T Consensus 173 rsr~~e~V~~Ei~~l~~~g~~-----e-I~l~d~~~~~y--~~~~ 209 (437)
T PRK14331 173 RSRRLGSILDEVQWLVDDGVK-----E-IHLIGQNVTAY--GKDI 209 (437)
T ss_pred ccCCHHHHHHHHHHHHHCCCe-----E-EEEeeeccccc--cCCC
Confidence 556788888999999987732 6 88899999998 7664
No 35
>TIGR02351 thiH thiazole biosynthesis protein ThiH. Members this protein family are the ThiH protein of thiamine biosynthesis, a homolog of the BioB protein of biotin biosynthesis. Genes for the this protein generally are found in operons with other thiamin biosynthesis genes.
Probab=68.84 E-value=22 Score=32.86 Aligned_cols=79 Identities=14% Similarity=0.135 Sum_probs=49.6
Q ss_pred ceeEEEeecCCCCCccccCCCceeeCCCCCCCCCCccccccCCCchhhHhHHHhcCCchHhHHHHHHHHHhcCCCCCccc
Q psy3055 91 IAVVAVMCKPHRCPHINMTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRARYNPYIQTRHRVEQLQQLGHSVDKEW 170 (219)
Q Consensus 91 VavVAVMt~P~~CPHi~~tgg~C~yCPggp~~~F~~spqSYtg~EPa~~RA~r~~yDPy~Q~~~Rl~qL~~~GH~vDKv~ 170 (219)
|...+.+-.--.|+ ++|.||.-...+. .+. |+ =+..++...++.+.+.| +.++
T Consensus 71 v~l~~~i~~Tn~C~------~~C~yC~~s~~~~---~~~-~~--------------Ls~eEI~~~a~~~~~~G--v~~i- 123 (366)
T TIGR02351 71 ISLFTPLYLSNYCS------NKCVYCGFSMSNK---IKR-KK--------------LNEEEIEREIEAIKKSG--FKEI- 123 (366)
T ss_pred EEEEeeeeECcccc------CCCCcCCCCCCCC---Ccc-Cc--------------CCHHHHHHHHHHHHhCC--CCEE-
Confidence 45555555446799 8999998643221 111 11 13578888889999998 5666
Q ss_pred cceeecCCCccCCCCCCCcHHHHHHHHHHh
Q psy3055 171 EHVITTGNLAMNWMAPTCPSLWFQINLLSR 200 (219)
Q Consensus 171 E~lIvmGGTf~~~~~p~~Yq~~Fi~~~~~a 200 (219)
+|+-|++-... +.+|-.+-++.+.+.
T Consensus 124 --~lvgGe~p~~~--~~e~l~eii~~Ik~~ 149 (366)
T TIGR02351 124 --LLVTGESEKAA--GVEYIAEAIKLAREY 149 (366)
T ss_pred --EEeeCCCCCCC--CHHHHHHHHHHHHHh
Confidence 66644455555 667777777766554
No 36
>PRK09240 thiH thiamine biosynthesis protein ThiH; Reviewed
Probab=68.60 E-value=14 Score=34.23 Aligned_cols=46 Identities=9% Similarity=-0.026 Sum_probs=33.2
Q ss_pred chHhHHHHHHHHHhcCCCCCccccceeecCCCccCCCCCCCcHHHHHHHHHHh
Q psy3055 148 PYIQTRHRVEQLQQLGHSVDKEWEHVITTGNLAMNWMAPTCPSLWFQINLLSR 200 (219)
Q Consensus 148 Py~Q~~~Rl~qL~~~GH~vDKv~E~lIvmGGTf~~~~~p~~Yq~~Fi~~~~~a 200 (219)
...++...++.+.+.| +.+| .||.|++.... +.+|-..-++.+.+.
T Consensus 105 s~eEI~~~a~~~~~~G--v~~i---~lvgGe~p~~~--~~e~l~~~i~~Ik~~ 150 (371)
T PRK09240 105 DEEEIEREMAAIKKLG--FEHI---LLLTGEHEAKV--GVDYIRRALPIAREY 150 (371)
T ss_pred CHHHHHHHHHHHHhCC--CCEE---EEeeCCCCCCC--CHHHHHHHHHHHHHh
Confidence 5578888888899998 5666 67777766656 667777777766653
No 37
>PRK14453 chloramphenicol/florfenicol resistance protein; Provisional
Probab=67.88 E-value=32 Score=32.16 Aligned_cols=29 Identities=24% Similarity=0.405 Sum_probs=19.1
Q ss_pred ccccCceeEEEee-cC-----------CCCCccccCCCceeeCCCCC
Q psy3055 86 RTASGIAVVAVMC-KP-----------HRCPHINMTGNICVYCPGGP 120 (219)
Q Consensus 86 RT~SGVavVAVMt-~P-----------~~CPHi~~tgg~C~yCPggp 120 (219)
++.-|-.|=||.- .. -.|| -.|.||..|.
T Consensus 81 ~l~dg~~iE~V~i~~~~~~~t~CvssqvGC~------~~C~FC~tg~ 121 (347)
T PRK14453 81 ELTDGERIEAVGLKYKQGWESFCISSQCGCG------FGCRFCATGS 121 (347)
T ss_pred EcCCCCEEEEEEEeecCCceeEEEecCCCcC------CCCCCCCCCC
Confidence 4456666666653 11 2499 8999998773
No 38
>TIGR03550 F420_cofG 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofG subunit. This model represents either a subunit or a domain, depending on whether or not the genes are fused, of a bifunctional protein that completes the synthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin, or FO. FO is the chromophore of coenzyme F(420), involved in methanogenesis in methanogenic archaea but found in certain other lineages as well. The chromophore also occurs as a cofactor in DNA photolyases in Cyanobacteria.
Probab=66.60 E-value=22 Score=32.06 Aligned_cols=32 Identities=9% Similarity=-0.137 Sum_probs=25.6
Q ss_pred CCchHhHHHHHHHHHhcCCCCCccccceeecCCCccCC
Q psy3055 146 YNPYIQTRHRVEQLQQLGHSVDKEWEHVITTGNLAMNW 183 (219)
Q Consensus 146 yDPy~Q~~~Rl~qL~~~GH~vDKv~E~lIvmGGTf~~~ 183 (219)
.-+..|+...++.+.+.|.. | +++.||.-...
T Consensus 34 ~l~~eeI~~~a~~~~~~G~~-----e-i~l~~G~~p~~ 65 (322)
T TIGR03550 34 LLSPEEVLEILRKGAAAGCT-----E-ALFTFGEKPEE 65 (322)
T ss_pred cCCHHHHHHHHHHHHHCCCC-----E-EEEecCCCccc
Confidence 44678999999999999873 5 77889987665
No 39
>COG1060 ThiH Thiamine biosynthesis enzyme ThiH and related uncharacterized enzymes [Coenzyme metabolism / General function prediction only]
Probab=65.78 E-value=56 Score=31.03 Aligned_cols=83 Identities=17% Similarity=0.139 Sum_probs=55.6
Q ss_pred ccccCceeEEEeecCC--CCCccccCCCceeeCCCCCCCCCCccccccCCCchhhHhHHHhcCCchHhHHHHHHHHHhcC
Q psy3055 86 RTASGIAVVAVMCKPH--RCPHINMTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRARYNPYIQTRHRVEQLQQLG 163 (219)
Q Consensus 86 RT~SGVavVAVMt~P~--~CPHi~~tgg~C~yCPggp~~~F~~spqSYtg~EPa~~RA~r~~yDPy~Q~~~Rl~qL~~~G 163 (219)
+.--||..|-=+.=++ -|- +.|.||.=-.+. ..|..|+= -..|+...++.+.+.|
T Consensus 50 ~~~~~vtyv~n~~in~TN~C~------~~C~fCaF~~~~---~~~~~y~L--------------s~eeI~~~~~~~~~~G 106 (370)
T COG1060 50 RVGDGVTYVVNRNINYTNICV------NDCTFCAFYRKP---GDPKAYTL--------------SPEEILEEVREAVKRG 106 (370)
T ss_pred ccCCcEEEEEeecCCcchhhc------CCCCccccccCC---CCcccccc--------------CHHHHHHHHHHHHHcC
Confidence 3445666666555454 487 999999632221 12244432 2368888999999999
Q ss_pred CCCCccccceeecCCCccCCCCCCCcHHHHHHHHHH
Q psy3055 164 HSVDKEWEHVITTGNLAMNWMAPTCPSLWFQINLLS 199 (219)
Q Consensus 164 H~vDKv~E~lIvmGGTf~~~~~p~~Yq~~Fi~~~~~ 199 (219)
+. | +.+.||--... ..+|-++-++.+.+
T Consensus 107 ~~-----E-vli~gG~~p~~--~~~y~~~~~~~ik~ 134 (370)
T COG1060 107 IT-----E-VLIVGGEHPEL--SLEYYEELFRTIKE 134 (370)
T ss_pred Ce-----E-EEEecCcCCCc--chHHHHHHHHHHHH
Confidence 86 7 99999999998 66676666555553
No 40
>PRK06245 cofG FO synthase subunit 1; Reviewed
Probab=64.80 E-value=24 Score=31.64 Aligned_cols=32 Identities=9% Similarity=-0.056 Sum_probs=25.7
Q ss_pred CCchHhHHHHHHHHHhcCCCCCccccceeecCCCccCC
Q psy3055 146 YNPYIQTRHRVEQLQQLGHSVDKEWEHVITTGNLAMNW 183 (219)
Q Consensus 146 yDPy~Q~~~Rl~qL~~~GH~vDKv~E~lIvmGGTf~~~ 183 (219)
+-+-.++...++++.+.|.. | +++.||.-..+
T Consensus 40 ~ls~eei~~~~~~~~~~G~~-----e-i~l~gG~~p~~ 71 (336)
T PRK06245 40 LLSPEEVKEILRRGADAGCT-----E-ALFTFGEVPDE 71 (336)
T ss_pred cCCHHHHHHHHHHHHHCCCC-----E-EEEecCCCCcc
Confidence 44668999999999999864 7 88888876655
No 41
>TIGR01579 MiaB-like-C MiaB-like tRNA modifying enzyme. This clade is a member of a subfamily (TIGR00089) and spans low GC Gram positive bacteria, alpha and epsilon proteobacteria, Campylobacter, Porphyromonas, Aquifex, Thermotoga, Chlamydia, Treponema and Fusobacterium.
Probab=64.60 E-value=5.2 Score=36.95 Aligned_cols=52 Identities=27% Similarity=0.416 Sum_probs=38.6
Q ss_pred CCCCccccCCCceeeCCCCCCCCCCccccccCCCchhhHhHHHhcCCchHhHHHHHHHHHhcCCCCCccccceeecCCCc
Q psy3055 101 HRCPHINMTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRARYNPYIQTRHRVEQLQQLGHSVDKEWEHVITTGNLA 180 (219)
Q Consensus 101 ~~CPHi~~tgg~C~yCPggp~~~F~~spqSYtg~EPa~~RA~r~~yDPy~Q~~~Rl~qL~~~GH~vDKv~E~lIvmGGTf 180 (219)
--|| +.|.||-- |.. |. +.++-|-.++..-+++|.+.|.. | +++.|..|
T Consensus 146 rGCp------~~CsfC~~---------~~~---------~g-~~r~r~~e~I~~Ei~~l~~~g~~-----e-i~l~~~~~ 194 (414)
T TIGR01579 146 DGCN------FFCSYCII---------PFA---------RG-RSRSVPMEAILKQVKILVAKGYK-----E-IVLTGVNL 194 (414)
T ss_pred cCcC------CCCCCCce---------eee---------cC-CCccCCHHHHHHHHHHHHHCCCc-----e-EEEeeEcc
Confidence 6799 59999953 111 11 24667888999999999988742 5 88889899
Q ss_pred cCC
Q psy3055 181 MNW 183 (219)
Q Consensus 181 ~~~ 183 (219)
+++
T Consensus 195 ~~y 197 (414)
T TIGR01579 195 GSY 197 (414)
T ss_pred chh
Confidence 888
No 42
>COG1242 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=64.17 E-value=5.8 Score=37.45 Aligned_cols=31 Identities=23% Similarity=0.453 Sum_probs=21.6
Q ss_pred cCCCCCccccCC--CceeeCCCCCCCCCCcccc
Q psy3055 99 KPHRCPHINMTG--NICVYCPGGPDSDFEYSTQ 129 (219)
Q Consensus 99 ~P~~CPHi~~tg--g~C~yCPggp~~~F~~spq 129 (219)
-.|.||+-+-|- |-|+|||.....||..+|+
T Consensus 30 ~GF~CPNRDGti~rGGCtFC~~~g~~d~~~~~~ 62 (312)
T COG1242 30 GGFSCPNRDGTIGRGGCTFCSVAGSGDFAGQPK 62 (312)
T ss_pred CCCCCCCCCCcccCCceeeecCCCCCccccCcc
Confidence 479999733322 8899998776656655555
No 43
>PRK08444 hypothetical protein; Provisional
Probab=61.84 E-value=23 Score=32.98 Aligned_cols=68 Identities=16% Similarity=0.189 Sum_probs=44.2
Q ss_pred CCCCccccCCCceeeCCCCCCCCCCccccccCCCchhhHhHHHhcCCchHhHHHHHHHHHhcCCCCCccccceeecCCCc
Q psy3055 101 HRCPHINMTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRARYNPYIQTRHRVEQLQQLGHSVDKEWEHVITTGNLA 180 (219)
Q Consensus 101 ~~CPHi~~tgg~C~yCPggp~~~F~~spqSYtg~EPa~~RA~r~~yDPy~Q~~~Rl~qL~~~GH~vDKv~E~lIvmGGTf 180 (219)
--|+ +.|.||-=...+ ..+..|+ . ...|+..++++..+.|.. | +.+.||--
T Consensus 57 N~C~------~~C~FCaf~~~~---~~~~~y~-------------l-s~eeI~~~a~~a~~~G~~-----e-i~iv~G~~ 107 (353)
T PRK08444 57 NICA------DVCKFCAFSAHR---KNPNPYT-------------M-SHEEILEIVKNSVKRGIK-----E-VHIVSAHN 107 (353)
T ss_pred cccc------cCCccCCCccCC---CCCcccc-------------C-CHHHHHHHHHHHHHCCCC-----E-EEEeccCC
Confidence 3577 899999755433 2334443 2 347888999999999965 6 66667755
Q ss_pred cCCCCCCCcHHHHHHHHHH
Q psy3055 181 MNWMAPTCPSLWFQINLLS 199 (219)
Q Consensus 181 ~~~~~p~~Yq~~Fi~~~~~ 199 (219)
... +.+|-...++.+-+
T Consensus 108 p~~--~~e~y~e~ir~Ik~ 124 (353)
T PRK08444 108 PNY--GYEWYLEIFKKIKE 124 (353)
T ss_pred CCC--CHHHHHHHHHHHHH
Confidence 555 55665555555554
No 44
>PF13394 Fer4_14: 4Fe-4S single cluster domain; PDB: 1TV8_B 1TV7_A 2FB2_A 2FB3_A.
Probab=61.44 E-value=11 Score=28.05 Aligned_cols=54 Identities=17% Similarity=0.325 Sum_probs=27.1
Q ss_pred CCCCccccCCCceeeCCCCCCCCCCccccccCCCchhhHhHHHhcCCchHhHHHHHHHHHhcCCCCCccccceeecCCCc
Q psy3055 101 HRCPHINMTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRARYNPYIQTRHRVEQLQQLGHSVDKEWEHVITTGNLA 180 (219)
Q Consensus 101 ~~CPHi~~tgg~C~yCPggp~~~F~~spqSYtg~EPa~~RA~r~~yDPy~Q~~~Rl~qL~~~GH~vDKv~E~lIvmGGTf 180 (219)
..|+ -.|.||......+ + ....+....++...++.++..+..... +.+.||.=
T Consensus 6 ~~Cn------l~C~~C~~~~~~~----~-------------~~~~~~~~~~~~~~i~~~~~~~~~~~~----v~~~GGEP 58 (119)
T PF13394_consen 6 SGCN------LRCSYCYNKSSWS----P-------------KKGEEMSIEELEEIIDELKEKGFRPST----VVFTGGEP 58 (119)
T ss_dssp S--S---------TTTS-TTTSS----T--------------GGGS--HHHHHHHHHHHHHTT----E----EEEESSSG
T ss_pred CCcC------CCCccCCcCccCC----C-------------ccCCcccHhHHHHHHHHHHhcCCceEE----EEEECCCC
Confidence 5798 5999999542111 1 233445666777888888888876643 66888875
Q ss_pred c
Q psy3055 181 M 181 (219)
Q Consensus 181 ~ 181 (219)
+
T Consensus 59 l 59 (119)
T PF13394_consen 59 L 59 (119)
T ss_dssp G
T ss_pred c
Confidence 4
No 45
>TIGR03699 mena_SCO4550 menaquinone biosynthesis protein, SCO4550 family. members of this protein family are involved in menaquinone biosynthesis by an alternate pathway via futalosine.
Probab=60.14 E-value=23 Score=31.79 Aligned_cols=43 Identities=9% Similarity=0.046 Sum_probs=29.8
Q ss_pred chHhHHHHHHHHHhcCCCCCccccceeecCCCccCCCCCCCcHHHHHHHHH
Q psy3055 148 PYIQTRHRVEQLQQLGHSVDKEWEHVITTGNLAMNWMAPTCPSLWFQINLL 198 (219)
Q Consensus 148 Py~Q~~~Rl~qL~~~GH~vDKv~E~lIvmGGTf~~~~~p~~Yq~~Fi~~~~ 198 (219)
+-.|+...++++++.| +. + +.+.||..... +.+|-...++.+-
T Consensus 73 s~eei~~~~~~~~~~G--~~---~-i~l~gG~~p~~--~~~~~~~li~~Ik 115 (340)
T TIGR03699 73 SVEEILQKIEELVAYG--GT---Q-ILLQGGVNPDL--GLDYYEDLFRAIK 115 (340)
T ss_pred CHHHHHHHHHHHHHcC--Cc---E-EEEecCCCCCC--CHHHHHHHHHHHH
Confidence 4478999999999888 33 3 55578887776 6666555555554
No 46
>PRK05926 hypothetical protein; Provisional
Probab=60.07 E-value=21 Score=33.43 Aligned_cols=78 Identities=6% Similarity=0.050 Sum_probs=47.4
Q ss_pred ceeEEEee--cCCCCCccccCCCceeeCCCCCCCCCCccccccCCCchhhHhHHHhcCCchHhHHHHHHHHHhcCCCCCc
Q psy3055 91 IAVVAVMC--KPHRCPHINMTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRARYNPYIQTRHRVEQLQQLGHSVDK 168 (219)
Q Consensus 91 VavVAVMt--~P~~CPHi~~tgg~C~yCPggp~~~F~~spqSYtg~EPa~~RA~r~~yDPy~Q~~~Rl~qL~~~GH~vDK 168 (219)
|..++++- +-=-|+ ..|.||.-..+. ..+..| +-+-.|+..++++. +.| +..
T Consensus 64 V~~~~~~nin~Tn~C~------~dC~FCaf~~~~---~~~~~~--------------~ls~eeI~~~a~~a-~~G--~~e 117 (370)
T PRK05926 64 VYYSSTLYLYPTNFCQ------FNCTFCSFYAKP---GDPKGW--------------FYTPDQLVQSIKEN-PSP--ITE 117 (370)
T ss_pred EEEEEeeeeecCCCCC------CCCCccccccCC---CCcccc--------------cCCHHHHHHHHHHH-hcC--CCE
Confidence 66666653 345799 799999833221 123333 23456777777777 577 444
Q ss_pred cccceeecCCCccCCCCCCCcHHHHHHHHHHh
Q psy3055 169 EWEHVITTGNLAMNWMAPTCPSLWFQINLLSR 200 (219)
Q Consensus 169 v~E~lIvmGGTf~~~~~p~~Yq~~Fi~~~~~a 200 (219)
+ .|| ||.-..+ +.+|-...++.+-+.
T Consensus 118 i---~iv-~G~~p~~--~~e~~~e~i~~Ik~~ 143 (370)
T PRK05926 118 T---HIV-AGCFPSC--NLAYYEELFSKIKQN 143 (370)
T ss_pred E---EEE-eCcCCCC--CHHHHHHHHHHHHHh
Confidence 4 555 7887776 666666666666554
No 47
>PRK14340 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=55.84 E-value=19 Score=34.16 Aligned_cols=49 Identities=20% Similarity=0.293 Sum_probs=34.2
Q ss_pred hcCCchHhHHHHHHHHHhcCCCCCccccceeecCCCccCCCCCCCc-HHHHHHHHHHhh
Q psy3055 144 ARYNPYIQTRHRVEQLQQLGHSVDKEWEHVITTGNLAMNWMAPTCP-SLWFQINLLSRT 201 (219)
Q Consensus 144 ~~yDPy~Q~~~Rl~qL~~~GH~vDKv~E~lIvmGGTf~~~~~p~~Y-q~~Fi~~~~~al 201 (219)
.+.-|..++-.-++.|.+.|.. | +.+.|.++.+| ..+. ...| .++++++
T Consensus 175 ~rsr~~e~Vv~Ei~~l~~~G~~-----e-i~l~~~~~~~y--~d~~~~~~l-~~Ll~~l 224 (445)
T PRK14340 175 ERSHPFASVLDEVRALAEAGYR-----E-ITLLGQNVNSY--SDPEAGADF-AGLLDAV 224 (445)
T ss_pred CcCCCHHHHHHHHHHHHHCCCe-----E-EEEeecccchh--hccCCCchH-HHHHHHH
Confidence 4566778899999999988742 6 89999999998 4432 2233 4555555
No 48
>PRK14339 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=55.34 E-value=24 Score=33.12 Aligned_cols=34 Identities=18% Similarity=0.139 Sum_probs=27.2
Q ss_pred chHhHHHHHHHHHhcCCCCCccccceeecCCCccCCCCCCCc
Q psy3055 148 PYIQTRHRVEQLQQLGHSVDKEWEHVITTGNLAMNWMAPTCP 189 (219)
Q Consensus 148 Py~Q~~~Rl~qL~~~GH~vDKv~E~lIvmGGTf~~~~~p~~Y 189 (219)
|..++-.-++.|.+.|.. | +++.|-++.+| ..++
T Consensus 157 ~~e~I~~Ei~~l~~~G~k-----e-I~l~~~~~~~y--g~d~ 190 (420)
T PRK14339 157 PMDLILKEAEKAVNNGAK-----E-IFLLGQNVNNY--GKRF 190 (420)
T ss_pred CHHHHHHHHHHHHHCCCc-----E-EEEeeeccccc--cCCC
Confidence 778888889999887742 6 88999999888 6553
No 49
>cd06548 GH18_chitinase The GH18 (glycosyl hydrolases, family 18) type II chitinases hydrolyze chitin, an abundant polymer of N-acetylglucosamine and have been identified in bacteria, fungi, insects, plants, viruses, and protozoan parasites. The structure of this domain is an eight-stranded alpha/beta barrel with a pronounced active-site cleft at the C-terminal end of the beta-barrel.
Probab=54.77 E-value=14 Score=32.96 Aligned_cols=50 Identities=12% Similarity=0.062 Sum_probs=34.6
Q ss_pred hHhHHHHHHHHHhcCCCCCccccceeecCC-----CccCCCCCCCcHHHHHHHHHHhhc
Q psy3055 149 YIQTRHRVEQLQQLGHSVDKEWEHVITTGN-----LAMNWMAPTCPSLWFQINLLSRTQ 202 (219)
Q Consensus 149 y~Q~~~Rl~qL~~~GH~vDKv~E~lIvmGG-----Tf~~~~~p~~Yq~~Fi~~~~~al~ 202 (219)
+.....++.+|++....+ || +|-+|| .|+.+.+....|+.||.++.+-+.
T Consensus 68 ~~~~~~~~~~lk~~~p~l-kv---l~siGG~~~s~~f~~~~~~~~~r~~Fi~siv~~l~ 122 (322)
T cd06548 68 LKGNFGQLRKLKQKNPHL-KI---LLSIGGWTWSGGFSDAAATEASRAKFADSAVDFIR 122 (322)
T ss_pred chhHHHHHHHHHHhCCCC-EE---EEEEeCCCCCCCchhHhCCHHHHHHHHHHHHHHHH
Confidence 334456677777654443 88 888888 455555677889999999986553
No 50
>PRK07094 biotin synthase; Provisional
Probab=52.87 E-value=48 Score=29.32 Aligned_cols=44 Identities=5% Similarity=-0.064 Sum_probs=25.9
Q ss_pred chHhHHHHHHHHHhcCCCCCccccceeecCCCccCCCCCCCcHHHHHHHHHH
Q psy3055 148 PYIQTRHRVEQLQQLGHSVDKEWEHVITTGNLAMNWMAPTCPSLWFQINLLS 199 (219)
Q Consensus 148 Py~Q~~~Rl~qL~~~GH~vDKv~E~lIvmGGTf~~~~~p~~Yq~~Fi~~~~~ 199 (219)
+-.++...++++.+.|. . + +.+.||+-..+ +.++-..+++.+-+
T Consensus 71 s~eei~~~~~~~~~~g~--~---~-i~l~gG~~~~~--~~~~l~~l~~~i~~ 114 (323)
T PRK07094 71 SPEEILECAKKAYELGY--R---T-IVLQSGEDPYY--TDEKIADIIKEIKK 114 (323)
T ss_pred CHHHHHHHHHHHHHCCC--C---E-EEEecCCCCCC--CHHHHHHHHHHHHc
Confidence 45677777888888774 2 3 56678863334 44444445555443
No 51
>PRK15108 biotin synthase; Provisional
Probab=52.25 E-value=94 Score=28.69 Aligned_cols=80 Identities=14% Similarity=0.215 Sum_probs=45.0
Q ss_pred ceeEEEee-cCCCCCccccCCCceeeCCCCCCCCCCccccccCCCchhhHhHHHhcCCchHhHHHHHHHHHhcCCCCCcc
Q psy3055 91 IAVVAVMC-KPHRCPHINMTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRARYNPYIQTRHRVEQLQQLGHSVDKE 169 (219)
Q Consensus 91 VavVAVMt-~P~~CPHi~~tgg~C~yCPggp~~~F~~spqSYtg~EPa~~RA~r~~yDPy~Q~~~Rl~qL~~~GH~vDKv 169 (219)
|-+.+++. +--.|+ .+|.||.....+.- +.+..|+ =+..++.....++.+.| ++++
T Consensus 40 v~l~~i~~~~Tn~C~------~~C~yC~~~~~~~~-~~~~~~~--------------ls~eEI~~~a~~~~~~G--~~~i 96 (345)
T PRK15108 40 VQVSTLLSIKTGACP------EDCKYCPQSSRYKT-GLEAERL--------------MEVEQVLESARKAKAAG--STRF 96 (345)
T ss_pred EEEEEeEEEECCCcC------CCCcCCCCcccCCC-CCCcccC--------------CCHHHHHHHHHHHHHcC--CCEE
Confidence 45555554 567899 89999975432110 1222221 13377888888888888 5566
Q ss_pred ccceeecCCCccCCCCCCCcHHHHHHHHHHhh
Q psy3055 170 WEHVITTGNLAMNWMAPTCPSLWFQINLLSRT 201 (219)
Q Consensus 170 ~E~lIvmGGTf~~~~~p~~Yq~~Fi~~~~~al 201 (219)
.|+.||+ - |.+.--.++.++++++
T Consensus 97 ---~i~~~g~---~--p~~~~~e~i~~~i~~i 120 (345)
T PRK15108 97 ---CMGAAWK---N--PHERDMPYLEQMVQGV 120 (345)
T ss_pred ---EEEecCC---C--CCcchHHHHHHHHHHH
Confidence 5555554 2 3222223555565555
No 52
>TIGR02493 PFLA pyruvate formate-lyase 1-activating enzyme. An iron-sulfur protein with a radical-SAM domain (pfam04055). A single glycine residue in EC 2.3.1.54, formate C-acetyltransferase (formate-pyruvate lyase), is oxidized to the corresponding radical by transfer of H from its CH2 to AdoMet with concomitant cleavage of the latter. The reaction requires Fe2+. The first stage is reduction of the AdoMet to give methionine and the 5'-deoxyadenosin-5-yl radical, which then abstracts a hydrogen radical from the glycine residue.
Probab=51.86 E-value=40 Score=28.15 Aligned_cols=16 Identities=38% Similarity=0.943 Sum_probs=12.4
Q ss_pred EeecCCCCCccccCCCceeeCCCC
Q psy3055 96 VMCKPHRCPHINMTGNICVYCPGG 119 (219)
Q Consensus 96 VMt~P~~CPHi~~tgg~C~yCPgg 119 (219)
|.++ .|| ..|.||...
T Consensus 20 v~~~--gCn------l~C~~C~~~ 35 (235)
T TIGR02493 20 VFMQ--GCP------LRCQYCHNP 35 (235)
T ss_pred EEEC--CCC------CcCCCCCCh
Confidence 5555 899 699999864
No 53
>PF13776 DUF4172: Domain of unknown function (DUF4172)
Probab=51.12 E-value=29 Score=26.66 Aligned_cols=44 Identities=20% Similarity=0.401 Sum_probs=32.7
Q ss_pred CCChhhHHHHHHHHHHHHHHHHhh-ccCcccHHHHHHHHHHHcCC
Q psy3055 12 KLSIDERTVLTIGEIIQELLVAHK-ECKDVNLNQMKTRISSKYGL 55 (219)
Q Consensus 12 ~~~~~e~~~~~~~eii~~ii~~~~-~~~~~~L~~~k~~i~rky~L 55 (219)
....+++.-..++-+.++++..-+ +++..|.+.+++-++|+.||
T Consensus 38 ~l~~~~~~~~~l~~l~~e~v~SS~IEGE~Ln~~sVrSSiarrLGl 82 (82)
T PF13776_consen 38 HLGFDLRQEAILDTLTAEIVKSSAIEGERLNRDSVRSSIARRLGL 82 (82)
T ss_pred ccCHhHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHcCC
Confidence 345555555566777778877654 36789999999999999985
No 54
>TIGR02666 moaA molybdenum cofactor biosynthesis protein A, bacterial. The model for this family describes molybdenum cofactor biosynthesis protein A, or MoaA, as found in bacteria. It does not include the family of probable functional equivalent proteins from the archaea. MoaA works together with MoaC to synthesize precursor Z from guanine.
Probab=50.87 E-value=61 Score=28.90 Aligned_cols=40 Identities=23% Similarity=0.219 Sum_probs=24.2
Q ss_pred chHhHHHHHHHHHhcCCCCCccccceeecCCCccCCCCCCCcHHHHHHHH
Q psy3055 148 PYIQTRHRVEQLQQLGHSVDKEWEHVITTGNLAMNWMAPTCPSLWFQINL 197 (219)
Q Consensus 148 Py~Q~~~Rl~qL~~~GH~vDKv~E~lIvmGGTf~~~~~p~~Yq~~Fi~~~ 197 (219)
.+.++..=++++.++| +.+ +.+.||.-+-. |. -..+++.+
T Consensus 44 s~eei~~~i~~~~~~g--v~~----V~ltGGEPll~--~~--l~~li~~i 83 (334)
T TIGR02666 44 TFEEIERLVRAFVGLG--VRK----VRLTGGEPLLR--KD--LVELVARL 83 (334)
T ss_pred CHHHHHHHHHHHHHCC--CCE----EEEECcccccc--CC--HHHHHHHH
Confidence 3456666677788887 332 66789986655 42 23455554
No 55
>PRK07360 FO synthase subunit 2; Reviewed
Probab=50.86 E-value=31 Score=31.88 Aligned_cols=54 Identities=17% Similarity=0.300 Sum_probs=35.1
Q ss_pred CCCCccccCCCceeeCCCCCCCCCCccccccCCCchhhHhHHHhcCCchHhHHHHHHHHHhcCCCCCccccceeecCCCc
Q psy3055 101 HRCPHINMTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRARYNPYIQTRHRVEQLQQLGHSVDKEWEHVITTGNLA 180 (219)
Q Consensus 101 ~~CPHi~~tgg~C~yCPggp~~~F~~spqSYtg~EPa~~RA~r~~yDPy~Q~~~Rl~qL~~~GH~vDKv~E~lIvmGGTf 180 (219)
-.|+ .+|.||.-.... .....| .=+..|+...++++.+.| +. | +.+.||.-
T Consensus 68 n~C~------~~C~fC~~~~~~---~~~~~y--------------~ls~eeI~~~a~~a~~~G--~~---~-i~l~~G~~ 118 (371)
T PRK07360 68 NICE------GHCGFCAFRRDE---GDHGAF--------------WLTIAEILEKAAEAVKRG--AT---E-VCIQGGLH 118 (371)
T ss_pred hhhh------cCCccCCcccCC---CCCCCe--------------eCCHHHHHHHHHHHHhCC--CC---E-EEEccCCC
Confidence 5798 689999865431 112222 125678999999999999 33 5 55558865
Q ss_pred cCC
Q psy3055 181 MNW 183 (219)
Q Consensus 181 ~~~ 183 (219)
...
T Consensus 119 p~~ 121 (371)
T PRK07360 119 PAA 121 (371)
T ss_pred CCC
Confidence 544
No 56
>PF08816 Ivy: Inhibitor of vertebrate lysozyme (Ivy); InterPro: IPR014453 C-type lysozyme enzymes, such as hen egg white lysozyme (HEWL), provide anti-bacterial activity by cleaving peptidoglycan in Gram-positive bacterial cell walls. In humans, C-type lysozyme is found in all secretions, including tears and saliva. Certain Gram-positive bacteria can produce proteins with anti-lysozyme activity known as Inhibitor of Vertebrate Lysozyme (IVY), which act as virulence factors [, ]. IVY proteins have a 3-layer alpha(2)/beta(5)/alpha(2) topology, and contain a protruding 5-residue loop that is essential for their inhibitory effect [].; GO: 0043086 negative regulation of catalytic activity, 0042597 periplasmic space; PDB: 1GPQ_A 1XS0_A 1UUZ_B.
Probab=48.02 E-value=12 Score=30.41 Aligned_cols=13 Identities=46% Similarity=1.152 Sum_probs=8.3
Q ss_pred eEEEeecCCCCCc
Q psy3055 93 VVAVMCKPHRCPH 105 (219)
Q Consensus 93 vVAVMt~P~~CPH 105 (219)
.|.=|||||.|+.
T Consensus 46 ~v~~~CkpHdC~~ 58 (118)
T PF08816_consen 46 LVGSACKPHDCAN 58 (118)
T ss_dssp EEEEEE-TT-TTT
T ss_pred EEeccccccCCCc
Confidence 3555899999995
No 57
>PRK06582 coproporphyrinogen III oxidase; Provisional
Probab=47.71 E-value=33 Score=32.08 Aligned_cols=32 Identities=3% Similarity=-0.188 Sum_probs=22.4
Q ss_pred ccccceeecCCCccCCCCCCCcHHHHHHHHHHhhc
Q psy3055 168 KEWEHVITTGNLAMNWMAPTCPSLWFQINLLSRTQ 202 (219)
Q Consensus 168 Kv~E~lIvmGGTf~~~~~p~~Yq~~Fi~~~~~al~ 202 (219)
++ +.+.+-|||-+.+ |.+.-+..+..+.+...
T Consensus 62 ~i-~tiy~GGGTPs~l--~~~~l~~ll~~i~~~~~ 93 (390)
T PRK06582 62 YI-KSIFFGGGTPSLM--NPVIVEGIINKISNLAI 93 (390)
T ss_pred ce-eEEEECCCccccC--CHHHHHHHHHHHHHhCC
Confidence 46 6578889999988 77766666666655433
No 58
>TIGR00089 RNA modification enzyme, MiaB family. This subfamily is aparrently a part of a larger superfamily of enzymes utilizing both a 4Fe4S cluster and S-adenosyl methionine (SAM) to initiate radical reactions. MiaB acts on a particular isoprenylated Adenine base of certain tRNAs causing thiolation at an aromatic carbon, and probably also transferring a methyl grouyp from SAM to the thiol. The particular substrate of the three other clades is unknown but may be very closely related.
Probab=47.10 E-value=19 Score=33.47 Aligned_cols=52 Identities=25% Similarity=0.462 Sum_probs=36.8
Q ss_pred CCCCccccCCCceeeCCCCCCCCCCccccccCCCchhhHhHHHhcCCchHhHHHHHHHHHhcCCCCCccccceeecCCCc
Q psy3055 101 HRCPHINMTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRARYNPYIQTRHRVEQLQQLGHSVDKEWEHVITTGNLA 180 (219)
Q Consensus 101 ~~CPHi~~tgg~C~yCPggp~~~F~~spqSYtg~EPa~~RA~r~~yDPy~Q~~~Rl~qL~~~GH~vDKv~E~lIvmGGTf 180 (219)
--|| ..|.||--. .. |. +.++-|-.++..-+++|.+.|.. | +.+.|..|
T Consensus 147 rGC~------~~CsfC~~~---------~~---------~g-~~r~r~~e~Vv~Ei~~l~~~g~~-----e-i~l~~~~~ 195 (429)
T TIGR00089 147 EGCD------KFCTYCIVP---------YA---------RG-RERSRPPEDILEEVKELVSKGVK-----E-IVLLGQNV 195 (429)
T ss_pred hCcC------CCCCcCcee---------cc---------cC-CCCCCCHHHHHHHHHHHHHCCCc-----e-EEEEeecc
Confidence 6799 599999632 11 11 24556778888889999887732 5 88888888
Q ss_pred cCC
Q psy3055 181 MNW 183 (219)
Q Consensus 181 ~~~ 183 (219)
.+|
T Consensus 196 ~~y 198 (429)
T TIGR00089 196 GAY 198 (429)
T ss_pred ccc
Confidence 877
No 59
>PF12872 OST-HTH: OST-HTH/LOTUS domain; PDB: 2KPM_A 3S93_B 3RCO_A 2KZV_A.
Probab=46.63 E-value=75 Score=21.96 Aligned_cols=50 Identities=24% Similarity=0.409 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHhhc-cCcccHHHHHHHHHHHc-CCC----CCCCHHHHHhhCCh
Q psy3055 21 LTIGEIIQELLVAHKE-CKDVNLNQMKTRISSKY-GLD----TSPRLVDIIAAVPA 70 (219)
Q Consensus 21 ~~~~eii~~ii~~~~~-~~~~~L~~~k~~i~rky-~L~----~~P~~~dIl~a~p~ 70 (219)
+.+.+.+.++|..... ...+.+..+...+.++| .++ +..+..+.|.++|+
T Consensus 4 ~~~~~~l~~ll~~~~~~~g~v~ls~l~~~~~~~~~~f~~~~yG~~~l~~ll~~~~~ 59 (74)
T PF12872_consen 4 EELKKLLRELLESQKGEDGWVSLSQLGQEYKKKYPDFDPRDYGFSSLSELLESLPD 59 (74)
T ss_dssp HHHHHHHHHHHHHTCTTTSSEEHHHHHHHHHHHHTT--TCCTTSSSHHHHHHT-TT
T ss_pred HHHHHHHHHHHHhCcCCCceEEHHHHHHHHHHHCCCCCccccCCCcHHHHHHhCCC
Confidence 4455566666643221 23689999999999998 222 56778888765554
No 60
>PRK13911 exodeoxyribonuclease III; Provisional
Probab=46.12 E-value=18 Score=31.72 Aligned_cols=44 Identities=23% Similarity=0.369 Sum_probs=24.8
Q ss_pred CceeeCCCCCCCCCCccccccCCCchhhHhHHHhcCCchHhHHHHHHHHHhcCCCCCccccceeecCC
Q psy3055 111 NICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRARYNPYIQTRHRVEQLQQLGHSVDKEWEHVITTGN 178 (219)
Q Consensus 111 g~C~yCPggp~~~F~~spqSYtg~EPa~~RA~r~~yDPy~Q~~~Rl~qL~~~GH~vDKv~E~lIvmGG 178 (219)
-.|+|||+|... ...-+.+..| +..+..+|.+|. .+- . +||+|-
T Consensus 101 l~nvY~Pn~~~~--------------~~r~~~K~~~--~~~~~~~l~~l~------~~~-~-~Ii~GD 144 (250)
T PRK13911 101 LVNVYTPNSQQA--------------LSRLSYRMSW--EVEFKKFLKALE------LKK-P-VIVCGD 144 (250)
T ss_pred EEEEEecCCCCC--------------CcchHHHHHH--HHHHHHHHHhcc------cCC-C-EEEEcc
Confidence 457899987421 1133444555 666667777663 222 3 777763
No 61
>cd02872 GH18_chitolectin_chitotriosidase This conserved domain family includes a large number of catalytically inactive chitinase-like lectins (chitolectins) including YKL-39, YKL-40 (HCGP39), YM1, oviductin, and AMCase (acidic mammalian chitinase), as well as catalytically active chitotriosidases. The conserved domain is an eight-stranded alpha/beta barrel fold belonging to the family 18 glycosyl hydrolases. The fold has a pronounced active-site cleft at the C-terminal end of the beta-barrel. The chitolectins lack a key active site glutamate (the proton donor required for hydrolytic activity) but retain highly conserved residues involved in oligosaccharide binding. Chitotriosidase is a chitinolytic enzyme expressed in maturing macrophages, which suggests that it plays a part in antimicrobial defense. Chitotriosidase hydrolyzes chitotriose, as well as colloidal chitin to yield chitobiose and is therefore considered an exochitinase. Chitotriosidase occurs in two major forms, the la
Probab=45.62 E-value=21 Score=32.02 Aligned_cols=51 Identities=12% Similarity=0.013 Sum_probs=35.2
Q ss_pred hHhHHHHHHHHHhcCCCCCccccceeecCC-C-----ccCCCCCCCcHHHHHHHHHHhhcc
Q psy3055 149 YIQTRHRVEQLQQLGHSVDKEWEHVITTGN-L-----AMNWMAPTCPSLWFQINLLSRTQW 203 (219)
Q Consensus 149 y~Q~~~Rl~qL~~~GH~vDKv~E~lIvmGG-T-----f~~~~~p~~Yq~~Fi~~~~~al~~ 203 (219)
..+...++.+|++. |+-=|| +|.+|| + |..+.+....|+.||.++.+.+.-
T Consensus 54 ~~~~~~~~~~lk~~-~p~lkv---lisiGG~~~~~~~f~~~~~~~~~r~~fi~~iv~~l~~ 110 (362)
T cd02872 54 DLGLYERFNALKEK-NPNLKT---LLAIGGWNFGSAKFSAMAASPENRKTFIKSAIAFLRK 110 (362)
T ss_pred hhhHHHHHHHHHhh-CCCceE---EEEEcCCCCCcchhHHHhCCHHHHHHHHHHHHHHHHH
Confidence 45667778888775 233567 777777 3 333445678899999999987653
No 62
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=45.48 E-value=80 Score=29.78 Aligned_cols=63 Identities=17% Similarity=0.224 Sum_probs=38.5
Q ss_pred eEEEeecCCCCCccccCCCceeeCCCCCCCCCCccccccCCCchhhHhHHHhcCCchHhHHHHHHHHHhcCCCCCccccc
Q psy3055 93 VVAVMCKPHRCPHINMTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRARYNPYIQTRHRVEQLQQLGHSVDKEWEH 172 (219)
Q Consensus 93 vVAVMt~P~~CPHi~~tgg~C~yCPggp~~~F~~spqSYtg~EPa~~RA~r~~yDPy~Q~~~Rl~qL~~~GH~vDKv~E~ 172 (219)
++.|+|+ --|| ..|.||.- |+.+.|. +.++-+-.++.+-++.+.+....+. +
T Consensus 197 ~~~i~ts-RGCp------~~C~FC~~---------~~~~~g~--------~~r~rs~e~V~~Ei~~~~~~~~~~~---~- 248 (472)
T TIGR03471 197 YISLYTG-RGCP------SKCTFCLW---------PQTVGGH--------RYRTRSAESVIEEVKYALENFPEVR---E- 248 (472)
T ss_pred eEEEEec-CCCC------CCCCCCCC---------CccCCCC--------ceEeCCHHHHHHHHHHHHHhcCCCc---E-
Confidence 4567764 4899 59999952 2222221 1234466778888888777542232 2
Q ss_pred eeecCCCccCC
Q psy3055 173 VITTGNLAMNW 183 (219)
Q Consensus 173 lIvmGGTf~~~ 183 (219)
+.+.+++|+.-
T Consensus 249 i~f~Dd~f~~~ 259 (472)
T TIGR03471 249 FFFDDDTFTDD 259 (472)
T ss_pred EEEeCCCCCCC
Confidence 66789999754
No 63
>PRK14326 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=44.02 E-value=56 Score=31.75 Aligned_cols=32 Identities=19% Similarity=0.064 Sum_probs=25.0
Q ss_pred CCchHhHHHHHHHHHhcCCCCCccccceeecCCCccCC
Q psy3055 146 YNPYIQTRHRVEQLQQLGHSVDKEWEHVITTGNLAMNW 183 (219)
Q Consensus 146 yDPy~Q~~~Rl~qL~~~GH~vDKv~E~lIvmGGTf~~~ 183 (219)
+-|-.++-.-+++|.+.|. .| +.+.|-+|.+|
T Consensus 185 sr~~e~Vv~Ei~~l~~~g~-----~e-i~l~d~n~~~y 216 (502)
T PRK14326 185 DRRPGDILAEVQALVDEGV-----LE-VTLLGQNVNAY 216 (502)
T ss_pred cCCHHHHHHHHHHHHHCCC-----ce-EEEEeeccccc
Confidence 4455788888999998773 36 88889999887
No 64
>PRK14327 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=43.52 E-value=65 Score=31.69 Aligned_cols=49 Identities=14% Similarity=0.059 Sum_probs=33.9
Q ss_pred cCCchHhHHHHHHHHHhcCCCCCccccceeecCCCccCCCCCCCcHH--HHHHHHHHhh
Q psy3055 145 RYNPYIQTRHRVEQLQQLGHSVDKEWEHVITTGNLAMNWMAPTCPSL--WFQINLLSRT 201 (219)
Q Consensus 145 ~yDPy~Q~~~Rl~qL~~~GH~vDKv~E~lIvmGGTf~~~~~p~~Yq~--~Fi~~~~~al 201 (219)
+.-|..++-.-++.|.+.|.. | +.+.|.+|.+| ..+... .-+.+|++++
T Consensus 239 Rsr~~e~Ii~Ei~~l~~~G~k-----e-I~L~g~n~~~y--g~d~~~~~~~l~~Ll~~I 289 (509)
T PRK14327 239 RSRRPEDIIQEVRHLARQGYK-----E-ITLLGQNVNAY--GKDFEDIEYGLGDLMDEI 289 (509)
T ss_pred eeCCHHHHHHHHHHHHHCCCc-----E-EEEEeeccccC--cccccccchHHHHHHHHH
Confidence 456678999999999998842 6 88999999988 544211 1134555555
No 65
>PRK14466 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=42.82 E-value=67 Score=30.36 Aligned_cols=29 Identities=24% Similarity=0.497 Sum_probs=20.5
Q ss_pred ccccCceeEEEeecCC-----------CCCccccCCCceeeCCCCC
Q psy3055 86 RTASGIAVVAVMCKPH-----------RCPHINMTGNICVYCPGGP 120 (219)
Q Consensus 86 RT~SGVavVAVMt~P~-----------~CPHi~~tgg~C~yCPggp 120 (219)
++.+|-.|=+|.-.-. .|| -.|.||-.|.
T Consensus 85 ~l~dg~~iEsVlip~~~r~t~cvSsQvGC~------~~C~FC~Tg~ 124 (345)
T PRK14466 85 PVGEGHFVESVYIPEEDRATLCVSSQVGCK------MNCLFCMTGK 124 (345)
T ss_pred EcCCCCEEEEEEEecCCceEEEEEcCCCCC------CCCCCCCCCC
Confidence 5677777777764222 799 4999998764
No 66
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=42.45 E-value=1.9e+02 Score=25.05 Aligned_cols=53 Identities=23% Similarity=0.448 Sum_probs=33.3
Q ss_pred ceeEEEee-cCCCCCccccCCCceeeCCCCCCCCCCccccccCCCchhhHhHHHhcCCchHhHHHHHHHHHhcCC
Q psy3055 91 IAVVAVMC-KPHRCPHINMTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRARYNPYIQTRHRVEQLQQLGH 164 (219)
Q Consensus 91 VavVAVMt-~P~~CPHi~~tgg~C~yCPggp~~~F~~spqSYtg~EPa~~RA~r~~yDPy~Q~~~Rl~qL~~~GH 164 (219)
|-+.++|. .--.|| ..|.||.....+. + +. ...++.+..++..-++++.+.|.
T Consensus 26 v~~~~~~~i~s~~C~------~~C~fC~~~~~~~----~----~~-------~~~~~~~~eei~~~~~~~~~~g~ 79 (296)
T TIGR00433 26 VQLCTIMNIKSGGCP------EDCKYCSQSSRSK----T----GL-------PIERLKKVDEVLEEARKAKAAGA 79 (296)
T ss_pred EEEEEEEecccCCCC------CCCcCCCCcccCC----C----CC-------ccccCCCHHHHHHHHHHHHHCCC
Confidence 66666765 468899 7999997633110 0 00 11234555677778888888885
No 67
>PRK00164 moaA molybdenum cofactor biosynthesis protein A; Reviewed
Probab=41.87 E-value=1e+02 Score=27.33 Aligned_cols=31 Identities=19% Similarity=0.143 Sum_probs=20.5
Q ss_pred CchHhHHHHHHHHHhcCCCCCccccceeecCCCccCC
Q psy3055 147 NPYIQTRHRVEQLQQLGHSVDKEWEHVITTGNLAMNW 183 (219)
Q Consensus 147 DPy~Q~~~Rl~qL~~~GH~vDKv~E~lIvmGGTf~~~ 183 (219)
-++.+...-++++.+.| + ..+.++||.-+-.
T Consensus 49 ls~eei~~~i~~~~~~g-----i-~~I~~tGGEPll~ 79 (331)
T PRK00164 49 LSLEEIERLVRAFVALG-----V-RKVRLTGGEPLLR 79 (331)
T ss_pred CCHHHHHHHHHHHHHCC-----C-CEEEEECCCCcCc
Confidence 34566666677777765 3 3367789987665
No 68
>PRK13361 molybdenum cofactor biosynthesis protein A; Provisional
Probab=41.79 E-value=1e+02 Score=27.83 Aligned_cols=30 Identities=13% Similarity=0.168 Sum_probs=19.6
Q ss_pred chHhHHHHHHHHHhcCCCCCccccceeecCCCccCC
Q psy3055 148 PYIQTRHRVEQLQQLGHSVDKEWEHVITTGNLAMNW 183 (219)
Q Consensus 148 Py~Q~~~Rl~qL~~~GH~vDKv~E~lIvmGGTf~~~ 183 (219)
++.+...-++++..+| | ++|.+.||.-+-+
T Consensus 46 s~eei~~li~~~~~~G-----v-~~I~~tGGEPllr 75 (329)
T PRK13361 46 SLEELAWLAQAFTELG-----V-RKIRLTGGEPLVR 75 (329)
T ss_pred CHHHHHHHHHHHHHCC-----C-CEEEEECcCCCcc
Confidence 4556666677777776 3 3367789886544
No 69
>TIGR01578 MiaB-like-B MiaB-like tRNA modifying enzyme, archaeal-type. This clade is a member of a subfamily (TIGR00089) and spans the archaea and eukaryotes. The only archaeal miaB-like genes are in this clade, while eukaryotes have sequences described by this model as well as ones falling within the scope of the MiaB equivalog model.
Probab=41.23 E-value=46 Score=31.18 Aligned_cols=58 Identities=17% Similarity=0.221 Sum_probs=38.0
Q ss_pred EEeecCCCCCccccCCCceeeCCCCCCCCCCccccccCCCchhhHhHHHhcCCchHhHHHHHHHHHhcCCCCCcccccee
Q psy3055 95 AVMCKPHRCPHINMTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRARYNPYIQTRHRVEQLQQLGHSVDKEWEHVI 174 (219)
Q Consensus 95 AVMt~P~~CPHi~~tgg~C~yCPggp~~~F~~spqSYtg~EPa~~RA~r~~yDPy~Q~~~Rl~qL~~~GH~vDKv~E~lI 174 (219)
|.+-----|| +.|.||-- |. +++. .++-|..++..-++.|.+.|.. | ++
T Consensus 135 ~~i~isrGC~------~~CsfC~i-p~--~~G~----------------~rsr~~e~Vl~Ei~~l~~~G~~-----e-i~ 183 (420)
T TIGR01578 135 EIIPINQGCL------GNCSYCIT-KH--ARGK----------------LASYPPEKIVEKARQLVAEGCK-----E-IW 183 (420)
T ss_pred EEEEEccCCC------CCCCCCcc-cc--CCCC----------------cccCCHHHHHHHHHHHHHCCCe-----E-EE
Confidence 4443345899 59999964 21 1111 2334777888889999988742 6 88
Q ss_pred ecCCCccCC
Q psy3055 175 TTGNLAMNW 183 (219)
Q Consensus 175 vmGGTf~~~ 183 (219)
+.|....+|
T Consensus 184 l~g~d~~~y 192 (420)
T TIGR01578 184 ITSQDTGAY 192 (420)
T ss_pred EEeeccccc
Confidence 888776666
No 70
>PRK14338 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=41.22 E-value=71 Score=30.47 Aligned_cols=50 Identities=16% Similarity=0.149 Sum_probs=32.5
Q ss_pred cCCchHhHHHHHHHHHhcCCCCCccccceeecCCCccCCCCCCCcHHHHHHHHHHhh
Q psy3055 145 RYNPYIQTRHRVEQLQQLGHSVDKEWEHVITTGNLAMNWMAPTCPSLWFQINLLSRT 201 (219)
Q Consensus 145 ~yDPy~Q~~~Rl~qL~~~GH~vDKv~E~lIvmGGTf~~~~~p~~Yq~~Fi~~~~~al 201 (219)
++-|..++...+++|.+.|. .| +.+.|.+|.+|..|..=+.+ +.++++++
T Consensus 182 rsr~~e~Il~ei~~l~~~G~-----ke-I~l~g~~~~~yG~d~~~~~~-l~~Ll~~l 231 (459)
T PRK14338 182 RSRPLAEIVEEVRRIAARGA-----KE-ITLLGQIVDSYGHDLPGRPD-LADLLEAV 231 (459)
T ss_pred ccCCHHHHHHHHHHHHHCCC-----eE-EEEeeecCCCcccccCChHH-HHHHHHHH
Confidence 34477889999999999884 26 88899998887222111233 34555554
No 71
>PRK00095 mutL DNA mismatch repair protein; Reviewed
Probab=40.74 E-value=89 Score=31.19 Aligned_cols=6 Identities=67% Similarity=1.724 Sum_probs=5.8
Q ss_pred CCCCCc
Q psy3055 100 PHRCPH 105 (219)
Q Consensus 100 P~~CPH 105 (219)
||.|||
T Consensus 592 P~~CPH 597 (617)
T PRK00095 592 PGTCPH 597 (617)
T ss_pred ccCCCC
Confidence 999999
No 72
>PF08901 DUF1847: Protein of unknown function (DUF1847); InterPro: IPR014997 This group of proteins are functionally uncharacterised. They contain 4 N-terminal cysteines that may form a zinc-binding domain.
Probab=40.01 E-value=1e+02 Score=26.69 Aligned_cols=70 Identities=27% Similarity=0.347 Sum_probs=44.2
Q ss_pred HHHHHHHHHHhhccCcccHHHHHHHHHHHcCCCCCCCHHHHHhhCC---------------hhHHHhhhhhhhhCCcccc
Q psy3055 24 GEIIQELLVAHKECKDVNLNQMKTRISSKYGLDTSPRLVDIIAAVP---------------AEAKKILLPKLKAKPIRTA 88 (219)
Q Consensus 24 ~eii~~ii~~~~~~~~~~L~~~k~~i~rky~L~~~P~~~dIl~a~p---------------~e~~~~L~~~L~~KPvRT~ 88 (219)
.+++++.++.+...++..+-+.-+.+-..+- ...+|..||+..+- .++-+.+..+|+.+
T Consensus 7 ~~~~e~~~~~Y~~~~~~~~~~~aa~vE~~~Y-~~~tRveEiieFak~mgykkiGiAfCiGL~~EA~~~~~iL~~~----- 80 (157)
T PF08901_consen 7 QEIIEEALELYKEDENRKIARAAAEVEGEGY-GKLTRVEEIIEFAKRMGYKKIGIAFCIGLRKEARILAKILEAN----- 80 (157)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhhhcc-cccchHHHHHHHHHHcCCCeeeehhhHhHHHHHHHHHHHHHHC-----
Confidence 5777777777655433334444444443332 46799999997542 23345666777654
Q ss_pred cCceeEEEeecC
Q psy3055 89 SGIAVVAVMCKP 100 (219)
Q Consensus 89 SGVavVAVMt~P 100 (219)
|--|++|+||-
T Consensus 81 -gFev~sV~CKv 91 (157)
T PF08901_consen 81 -GFEVYSVCCKV 91 (157)
T ss_pred -CCEEEEEEecC
Confidence 88899999984
No 73
>PRK14337 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=39.64 E-value=1.1e+02 Score=29.07 Aligned_cols=33 Identities=12% Similarity=0.153 Sum_probs=26.1
Q ss_pred cCCchHhHHHHHHHHHhcCCCCCccccceeecCCCccCC
Q psy3055 145 RYNPYIQTRHRVEQLQQLGHSVDKEWEHVITTGNLAMNW 183 (219)
Q Consensus 145 ~yDPy~Q~~~Rl~qL~~~GH~vDKv~E~lIvmGGTf~~~ 183 (219)
++-|...+-.-+++|.+.|.. | +.+.|.+|.+|
T Consensus 175 rsr~~e~Iv~Ei~~l~~~G~~-----e-I~l~~~~~~~y 207 (446)
T PRK14337 175 KSRSSAAVLDECRALVDRGAR-----E-ITLLGQNVNSY 207 (446)
T ss_pred eeCCHHHHHHHHHHHHHCCCe-----E-EEEEecCcccc
Confidence 456777888889999887742 6 88999999887
No 74
>PRK14328 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=39.53 E-value=34 Score=32.20 Aligned_cols=33 Identities=18% Similarity=0.160 Sum_probs=25.5
Q ss_pred cCCchHhHHHHHHHHHhcCCCCCccccceeecCCCccCC
Q psy3055 145 RYNPYIQTRHRVEQLQQLGHSVDKEWEHVITTGNLAMNW 183 (219)
Q Consensus 145 ~yDPy~Q~~~Rl~qL~~~GH~vDKv~E~lIvmGGTf~~~ 183 (219)
++-|...+..-++.|.+.|.. | +++.|.+|.+|
T Consensus 174 Rsr~~e~Iv~Ei~~l~~~G~~-----e-i~l~~~~~~~y 206 (439)
T PRK14328 174 RSRKPEDIIAEIKELVSEGYK-----E-VTLLGQNVNSY 206 (439)
T ss_pred ccCCHHHHHHHHHHHHHCCCc-----E-EEEeccccCcC
Confidence 455677888888888887742 6 88889999887
No 75
>TIGR01125 MiaB-like tRNA modifying enzyme YliG, TIGR01125. This clade spans alpha and gamma proteobacteria, cyano bacteria, deinococcus, porphyromonas, aquifex, helicobacter, campylobacter, thermotoga, chlamydia, streptococcus coelicolor and clostridium, but does not include most other gram positive bacteria, archaea or eukaryotes.
Probab=39.44 E-value=51 Score=30.80 Aligned_cols=56 Identities=20% Similarity=0.326 Sum_probs=34.5
Q ss_pred eecCCCCCccccCCCceeeCCCCCCCCCCccccccCCCchhhHhHHHhcCCchHhHHHHHHHHHhcCCCCCccccceeec
Q psy3055 97 MCKPHRCPHINMTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRARYNPYIQTRHRVEQLQQLGHSVDKEWEHVITT 176 (219)
Q Consensus 97 Mt~P~~CPHi~~tgg~C~yCPggp~~~F~~spqSYtg~EPa~~RA~r~~yDPy~Q~~~Rl~qL~~~GH~vDKv~E~lIvm 176 (219)
+-----|| ..|.||.-. ..+ |. .+.-|-.++-.-+++|.+.|.. | +++.
T Consensus 139 i~~srGC~------~~CsfC~~~---------~~~-G~---------~r~r~~e~Vv~Ei~~l~~~g~k-----~-i~~~ 187 (430)
T TIGR01125 139 LKVAEGCN------RRCAFCIIP---------SIR-GK---------LRSRPIEEILKEAERLVDQGVK-----E-IILI 187 (430)
T ss_pred EEEccCCC------CCCCcCCee---------ccc-CC---------ceecCHHHHHHHHHHHHHCCCc-----E-EEEE
Confidence 33345799 599999532 111 11 2445667888889999888751 4 6666
Q ss_pred CCCccCC
Q psy3055 177 GNLAMNW 183 (219)
Q Consensus 177 GGTf~~~ 183 (219)
|--+.++
T Consensus 188 ~~d~~~~ 194 (430)
T TIGR01125 188 AQDTTAY 194 (430)
T ss_pred eECCCcc
Confidence 6444444
No 76
>PRK14468 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=37.80 E-value=63 Score=30.03 Aligned_cols=30 Identities=27% Similarity=0.539 Sum_probs=20.6
Q ss_pred cccccCceeEEEeec-----------CCCCCccccCCCceeeCCCCC
Q psy3055 85 IRTASGIAVVAVMCK-----------PHRCPHINMTGNICVYCPGGP 120 (219)
Q Consensus 85 vRT~SGVavVAVMt~-----------P~~CPHi~~tgg~C~yCPggp 120 (219)
.++..|-.|=+|.-. -..|| -.|.||+.|.
T Consensus 74 ~~~~dg~~iE~V~i~~~~~~t~cvSsq~GC~------l~C~fC~tg~ 114 (343)
T PRK14468 74 FTLLDGKQTEAVYMPYLDRKTICVSTMVGCP------AGCAFCATGA 114 (343)
T ss_pred EECCCCCEEEEEEEEecCCCEEEEEecCCCC------CcCCCCCCCC
Confidence 356677777776532 13599 8999998764
No 77
>PRK14325 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=37.68 E-value=73 Score=29.91 Aligned_cols=32 Identities=22% Similarity=0.244 Sum_probs=24.9
Q ss_pred CCchHhHHHHHHHHHhcCCCCCccccceeecCCCccCC
Q psy3055 146 YNPYIQTRHRVEQLQQLGHSVDKEWEHVITTGNLAMNW 183 (219)
Q Consensus 146 yDPy~Q~~~Rl~qL~~~GH~vDKv~E~lIvmGGTf~~~ 183 (219)
+-|..++-+-++.|.+.|.. | +.+.|-+|.+|
T Consensus 175 sr~~e~Iv~Ei~~l~~~g~~-----e-i~l~d~~~~~y 206 (444)
T PRK14325 175 SRPVDDVLAEVAQLAEQGVR-----E-ITLLGQNVNAY 206 (444)
T ss_pred cCCHHHHHHHHHHHHHCCCc-----E-EEEEeeccccc
Confidence 45778888889999988742 5 77888888776
No 78
>COG2108 Uncharacterized conserved protein related to pyruvate formate-lyase activating enzyme [General function prediction only]
Probab=36.23 E-value=16 Score=35.05 Aligned_cols=56 Identities=23% Similarity=0.551 Sum_probs=37.1
Q ss_pred CCCccccCCCceeeCCCCCCCC-----CCc-------------------cccccCCCchhh--------HhHHHhcC---
Q psy3055 102 RCPHINMTGNICVYCPGGPDSD-----FEY-------------------STQSYTGYEPTS--------MRAIRARY--- 146 (219)
Q Consensus 102 ~CPHi~~tgg~C~yCPggp~~~-----F~~-------------------spqSYtg~EPa~--------~RA~r~~y--- 146 (219)
-|| ..|.|||-+++-. |.+ .=-|+||-||-. .|+....|
T Consensus 37 ~C~------~~CfYCPvs~~r~gkdviyaNErpV~~~eDii~ea~~~~a~GasiTGGdPl~~ieR~~~~ir~LK~efG~~ 110 (353)
T COG2108 37 LCN------RSCFYCPVSDERKGKDVIYANERPVKSVEDIIEEAKLMDALGASITGGDPLLEIERTVEYIRLLKDEFGED 110 (353)
T ss_pred ccC------CCcccCcCCHHhcCCcceeecccccCcHHHHHHHHHHhccccccccCCChHHHHHHHHHHHHHHHHhhccc
Confidence 588 8999999987531 211 223999999964 45665555
Q ss_pred -------CchHhHHHHHHHHHhcC
Q psy3055 147 -------NPYIQTRHRVEQLQQLG 163 (219)
Q Consensus 147 -------DPy~Q~~~Rl~qL~~~G 163 (219)
.+-.-....|+.|..-|
T Consensus 111 fHiHLYT~g~~~~~e~l~~L~eAG 134 (353)
T COG2108 111 FHIHLYTTGILATEEALKALAEAG 134 (353)
T ss_pred eeEEEeeccccCCHHHHHHHHhCC
Confidence 23334566788888777
No 79
>PF11121 DUF2639: Protein of unknown function (DUF2639); InterPro: IPR022580 This family is conserved in the Bacillaceae family. Several members are named as being YflJ, but the function is not known.
Probab=34.92 E-value=32 Score=23.85 Aligned_cols=28 Identities=32% Similarity=0.396 Sum_probs=22.6
Q ss_pred HHHHHhcC---CCCCccccceeecCCCccCCCCCCCcHHHHHHHHHHh
Q psy3055 156 VEQLQQLG---HSVDKEWEHVITTGNLAMNWMAPTCPSLWFQINLLSR 200 (219)
Q Consensus 156 l~qL~~~G---H~vDKv~E~lIvmGGTf~~~~~p~~Yq~~Fi~~~~~a 200 (219)
+++|++.| |+--|+ | .|...|++++++.
T Consensus 9 V~eLKk~GI~~h~~rKl-e----------------syK~~~L~nl~~k 39 (40)
T PF11121_consen 9 VKELKKLGIRRHEGRKL-E----------------SYKTHILRNLYEK 39 (40)
T ss_pred HHHHHHhCccccchhHH-H----------------HHHHHHHHHHHHh
Confidence 67788877 777788 8 7899999999863
No 80
>PRK14862 rimO ribosomal protein S12 methylthiotransferase; Provisional
Probab=34.79 E-value=68 Score=30.39 Aligned_cols=34 Identities=15% Similarity=0.176 Sum_probs=23.3
Q ss_pred hcCCchHhHHHHHHHHHhcCCCCCccccceeecCCCccCC
Q psy3055 144 ARYNPYIQTRHRVEQLQQLGHSVDKEWEHVITTGNLAMNW 183 (219)
Q Consensus 144 ~~yDPy~Q~~~Rl~qL~~~GH~vDKv~E~lIvmGGTf~~~ 183 (219)
.++-|..++-.-+++|.+.|.. | +++.|=...+|
T Consensus 165 ~rsr~~e~Vv~Ei~~l~~~g~k-----e-i~l~~~d~~~y 198 (440)
T PRK14862 165 LVSRPIGDVLREAERLVKAGVK-----E-LLVISQDTSAY 198 (440)
T ss_pred ccccCHHHHHHHHHHHHHCCCc-----e-EEEEecChhhh
Confidence 3567888999999999987742 4 66665444443
No 81
>PLN02389 biotin synthase
Probab=33.24 E-value=2.2e+02 Score=26.98 Aligned_cols=82 Identities=10% Similarity=0.145 Sum_probs=46.4
Q ss_pred ceeEEEee-cCCCCCccccCCCceeeCCCCCCCCCCccccccCCCchhhHhHHHhcCCchHhHHHHHHHHHhcCCCCCcc
Q psy3055 91 IAVVAVMC-KPHRCPHINMTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRARYNPYIQTRHRVEQLQQLGHSVDKE 169 (219)
Q Consensus 91 VavVAVMt-~P~~CPHi~~tgg~C~yCPggp~~~F~~spqSYtg~EPa~~RA~r~~yDPy~Q~~~Rl~qL~~~GH~vDKv 169 (219)
|-..+++- +--.|+ ..|.||.-...++ .+.+. ..+=...++...++++.+.|. ..+
T Consensus 80 v~~~~i~n~~T~~C~------~~C~fCaqs~~~~-~~~~~--------------~~~Ls~EeIl~~a~~~~~~G~--~~~ 136 (379)
T PLN02389 80 VQQCTLLSIKTGGCS------EDCSYCPQSSRYD-TGVKA--------------QKLMSKDDVLEAAKRAKEAGS--TRF 136 (379)
T ss_pred EEEEEEEEeccCCcC------cCCCCCCCcccCC-CCCcc--------------cccCCHHHHHHHHHHHHHcCC--CEE
Confidence 66777763 678999 8999998532110 00111 111255688888888888884 345
Q ss_pred ccceeecCCCccCCCCCCCcHHHHHHHHHHhh
Q psy3055 170 WEHVITTGNLAMNWMAPTCPSLWFQINLLSRT 201 (219)
Q Consensus 170 ~E~lIvmGGTf~~~~~p~~Yq~~Fi~~~~~al 201 (219)
.|+.+|..+.- ++.+- .++.++++++
T Consensus 137 ---~ivts~rg~~~--e~~~~-e~i~eiir~i 162 (379)
T PLN02389 137 ---CMGAAWRDTVG--RKTNF-NQILEYVKEI 162 (379)
T ss_pred ---EEEecccCCCC--ChhHH-HHHHHHHHHH
Confidence 56665544433 32222 2344555544
No 82
>KOG3041|consensus
Probab=32.86 E-value=40 Score=30.69 Aligned_cols=31 Identities=42% Similarity=0.819 Sum_probs=25.0
Q ss_pred ccccCceeEEEe----------ecCCCCCccccCCCceeeCCCCC
Q psy3055 86 RTASGIAVVAVM----------CKPHRCPHINMTGNICVYCPGGP 120 (219)
Q Consensus 86 RT~SGVavVAVM----------t~P~~CPHi~~tgg~C~yCPggp 120 (219)
-++.||||+|+. +|-||=| +|+.|+--|.|-
T Consensus 71 a~~dgVaIl~il~~dG~~~ivL~kQfRpP----~Gk~ciElPAGL 111 (225)
T KOG3041|consen 71 ARADGVAILAILESDGKPYIVLVKQFRPP----TGKICIELPAGL 111 (225)
T ss_pred ccCCeEEEEEEEecCCcEEEEEEEeecCC----CCcEEEEccccc
Confidence 467899999875 5566777 689999999986
No 83
>PRK14330 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=32.56 E-value=1.1e+02 Score=28.70 Aligned_cols=60 Identities=25% Similarity=0.407 Sum_probs=39.9
Q ss_pred CceeEEEeecCCCCCccccCCCceeeCCCCCCCCCCccccccCCCchhhHhHHHhcCCchHhHHHHHHHHHhcCCCCCcc
Q psy3055 90 GIAVVAVMCKPHRCPHINMTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRARYNPYIQTRHRVEQLQQLGHSVDKE 169 (219)
Q Consensus 90 GVavVAVMt~P~~CPHi~~tgg~C~yCPggp~~~F~~spqSYtg~EPa~~RA~r~~yDPy~Q~~~Rl~qL~~~GH~vDKv 169 (219)
..+.|-|+ --|| ..|.||-- |.. .|. .+.-|..++-.-+++|.+.|..
T Consensus 140 ~~~~v~i~---rGC~------~~CsFC~i---------p~~-~G~---------~rsr~~e~Iv~Ei~~l~~~g~k---- 187 (434)
T PRK14330 140 HHAWVTII---YGCN------RFCTYCIV---------PYT-RGR---------EKSRPMEDILEEVEKLAKQGYR---- 187 (434)
T ss_pred cEEEEEcc---cCCC------CCCCCCce---------ECc-CCC---------CccCCHHHHHHHHHHHHHCCCc----
Confidence 34555555 5899 59999942 211 111 2466788888889999887732
Q ss_pred ccceeecCCCccCC
Q psy3055 170 WEHVITTGNLAMNW 183 (219)
Q Consensus 170 ~E~lIvmGGTf~~~ 183 (219)
| +++.|..+.+|
T Consensus 188 -e-i~l~~~n~~~y 199 (434)
T PRK14330 188 -E-VTFLGQNVDAY 199 (434)
T ss_pred -E-EEEEEeccccc
Confidence 5 77778777765
No 84
>PRK14335 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=32.40 E-value=75 Score=30.28 Aligned_cols=32 Identities=13% Similarity=0.166 Sum_probs=26.2
Q ss_pred CCchHhHHHHHHHHHhcCCCCCccccceeecCCCccCC
Q psy3055 146 YNPYIQTRHRVEQLQQLGHSVDKEWEHVITTGNLAMNW 183 (219)
Q Consensus 146 yDPy~Q~~~Rl~qL~~~GH~vDKv~E~lIvmGGTf~~~ 183 (219)
+-|...+..-++.|.+.|.. | +++.|.+|.+|
T Consensus 180 sr~~e~Vv~Ei~~l~~~G~~-----e-i~l~g~~~~~y 211 (455)
T PRK14335 180 SRDLDAILQEIDVLSEKGVR-----E-ITLLGQNVNSY 211 (455)
T ss_pred cCCHHHHHHHHHHHHHCCCe-----E-EEEEeeccccc
Confidence 45778888889999988842 6 88999999987
No 85
>PRK06256 biotin synthase; Validated
Probab=30.86 E-value=3.9e+02 Score=23.85 Aligned_cols=55 Identities=18% Similarity=0.268 Sum_probs=33.4
Q ss_pred cCCCCCccccCCCceeeCCCCCCCCCCccccccCCCchhhHhHHHhcCCchHhHHHHHHHHHhcCCCCCccccceeecCC
Q psy3055 99 KPHRCPHINMTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRARYNPYIQTRHRVEQLQQLGHSVDKEWEHVITTGN 178 (219)
Q Consensus 99 ~P~~CPHi~~tgg~C~yCPggp~~~F~~spqSYtg~EPa~~RA~r~~yDPy~Q~~~Rl~qL~~~GH~vDKv~E~lIvmGG 178 (219)
+--.|| ..|.||.-.... ..+. .+.++=+..++...++.+.+.|- .++ .|+.||
T Consensus 64 ~s~~C~------~~C~fC~~~~~~---~~~~------------~~~~~~s~eeI~~~~~~~~~~g~--~~~---~l~~~g 117 (336)
T PRK06256 64 KSGLCP------EDCGYCSQSAGS---SAPV------------YRYAWLDIEELIEAAKEAIEEGA--GTF---CIVASG 117 (336)
T ss_pred cCCCCC------CCCccCCCcCCC---CCCC------------ceecCCCHHHHHHHHHHHHHCCC--CEE---EEEecC
Confidence 358999 799999854311 0000 01123355888899999999884 234 555555
Q ss_pred C
Q psy3055 179 L 179 (219)
Q Consensus 179 T 179 (219)
.
T Consensus 118 ~ 118 (336)
T PRK06256 118 R 118 (336)
T ss_pred C
Confidence 4
No 86
>cd01529 4RHOD_Repeats Member of the Rhodanese Homology Domain superfamily. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. Only the second and most of the fourth repeats contain the putative catalytic Cys residue. This CD aligns the 1st , 2nd, 3rd, and 4th repeats.
Probab=30.81 E-value=66 Score=23.07 Aligned_cols=20 Identities=20% Similarity=0.322 Sum_probs=13.7
Q ss_pred HHHHHHhcCCCCCccccceeecCCC
Q psy3055 155 RVEQLQQLGHSVDKEWEHVITTGNL 179 (219)
Q Consensus 155 Rl~qL~~~GH~vDKv~E~lIvmGGT 179 (219)
+...|+.+||. +| .++-||.
T Consensus 72 ~~~~l~~~G~~--~v---~~l~GG~ 91 (96)
T cd01529 72 AAQELLALGGK--PV---ALLDGGT 91 (96)
T ss_pred HHHHHHHcCCC--CE---EEeCCCH
Confidence 45678889995 66 5556664
No 87
>cd00455 nuc_hydro nuc_hydro: Nucleoside hydrolases. Nucleoside hydrolases cleave the N-glycosidic bond in nucleosides generating ribose and the respective base. These enzymes vary in their substrate specificity. This group contains eukaryotic, bacterial and archeal proteins similar to the inosine-uridine preferring nucleoside hydrolase from Crithidia fasciculata, the xanthosine-inosine-uridine-adenosine-preferring nucleoside hydrolase RihC from Salmonella enterica serovar Typhimurium, the purine-specific inosine-adenosine-guanosine-preferring nucleoside hydrolase from Trypanosoma vivax and, pyrimidine-specific uridine-cytidine preferring nucleoside hydrolases such as URH1 from Saccharomyces cerevisiae, RihA and RihB from Escherichia coli. Nucleoside hydrolases are of interest as a target for antiprotozoan drugs as, no nucleoside hydrolase activity or genes encoding these enzymes have been detected in humans and, parasitic protozoans lack de novo purine synthesis relying on nucleosid
Probab=28.95 E-value=25 Score=31.39 Aligned_cols=15 Identities=13% Similarity=0.271 Sum_probs=12.3
Q ss_pred CCCccccceeecCCCc
Q psy3055 165 SVDKEWEHVITTGNLA 180 (219)
Q Consensus 165 ~vDKv~E~lIvmGGTf 180 (219)
-.+|| +++++|||+|
T Consensus 135 ~~~~i-~~iviMGG~~ 149 (295)
T cd00455 135 IKDRV-KEIVIMGGAF 149 (295)
T ss_pred HHHhC-CEEEEcCCcc
Confidence 35688 6699999998
No 88
>PRK14467 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=28.86 E-value=55 Score=30.67 Aligned_cols=30 Identities=20% Similarity=0.509 Sum_probs=20.7
Q ss_pred cccccCceeEEEee-----------cCCCCCccccCCCceeeCCCCC
Q psy3055 85 IRTASGIAVVAVMC-----------KPHRCPHINMTGNICVYCPGGP 120 (219)
Q Consensus 85 vRT~SGVavVAVMt-----------~P~~CPHi~~tgg~C~yCPggp 120 (219)
.++.-|-.|=||.- +--.|| -.|.||..|.
T Consensus 80 ~~~~dg~~vE~V~i~~~~~~t~cvSsq~GC~------l~C~FC~t~~ 120 (348)
T PRK14467 80 FKTKDGHTIETVLIKERDHLTLCVSSQVGCA------VGCKFCATAK 120 (348)
T ss_pred EEcCCCCEEEEEEEEeCCCcEEEEEcCCCCC------CcCcCCCCCC
Confidence 35566777777753 223699 8999998863
No 89
>COG1957 URH1 Inosine-uridine nucleoside N-ribohydrolase [Nucleotide transport and metabolism]
Probab=28.65 E-value=24 Score=32.97 Aligned_cols=14 Identities=7% Similarity=0.228 Sum_probs=11.2
Q ss_pred ccccceeecCCCccC
Q psy3055 168 KEWEHVITTGNLAMN 182 (219)
Q Consensus 168 Kv~E~lIvmGGTf~~ 182 (219)
+| ++|+||||+|..
T Consensus 143 ~i-k~iviMGGa~~~ 156 (311)
T COG1957 143 RI-KEIVIMGGAFFV 156 (311)
T ss_pred hh-cEEEEecCccCC
Confidence 45 559999999876
No 90
>PRK15441 peptidyl-prolyl cis-trans isomerase C; Provisional
Probab=28.27 E-value=1.6e+02 Score=21.82 Aligned_cols=70 Identities=16% Similarity=0.220 Sum_probs=35.1
Q ss_pred HHHHHHHHHHhhccCcccHHHHHHHHHHHcCCCCCCCHHHH----HhhCChhHHHhhhhhh---hhCCcccccCceeEEE
Q psy3055 24 GEIIQELLVAHKECKDVNLNQMKTRISSKYGLDTSPRLVDI----IAAVPAEAKKILLPKL---KAKPIRTASGIAVVAV 96 (219)
Q Consensus 24 ~eii~~ii~~~~~~~~~~L~~~k~~i~rky~L~~~P~~~dI----l~a~p~e~~~~L~~~L---~~KPvRT~SGVavVAV 96 (219)
++.+.+|.+.++.+ .+.+++-++.+..-. .-...++ ...+|++.++.+..+= ...|++|.-|..+|-|
T Consensus 15 ~~~A~~i~~~l~~g--~~F~~la~~~S~~~~---~~~gG~lg~~~~~~l~~~f~~a~~~l~~G~vs~Pi~t~~G~hIlkv 89 (93)
T PRK15441 15 EKLALDLLEQIKNG--ADFGKLAKKHSICPS---GKRGGDLGEFRQGQMVPAFDKVVFSCPVLEPTGPLHTQFGYHIIKV 89 (93)
T ss_pred HHHHHHHHHHHHCC--CCHHHHHHHhCCCch---hhcCccceeecccccCHHHHHHHHhCCCCCcCCcEEcCCEEEEEEE
Confidence 35566677766554 455554433322100 0001111 1234555444442210 2479999999999988
Q ss_pred ee
Q psy3055 97 MC 98 (219)
Q Consensus 97 Mt 98 (219)
+-
T Consensus 90 ~~ 91 (93)
T PRK15441 90 LY 91 (93)
T ss_pred Ee
Confidence 63
No 91
>PRK14470 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=28.19 E-value=1.6e+02 Score=27.49 Aligned_cols=30 Identities=30% Similarity=0.614 Sum_probs=21.3
Q ss_pred cccccCceeEEEeec----CC--------CCCccccCCCceeeCCCCC
Q psy3055 85 IRTASGIAVVAVMCK----PH--------RCPHINMTGNICVYCPGGP 120 (219)
Q Consensus 85 vRT~SGVavVAVMt~----P~--------~CPHi~~tgg~C~yCPggp 120 (219)
.++..|-.|=||+-. |+ -|+ -.|.||..|.
T Consensus 77 ~~l~dg~~iE~V~ip~~~~~~t~cvSsq~GC~------l~C~fC~tg~ 118 (336)
T PRK14470 77 FELPDGLRVEAVRIPLFDTHHVVCLSSQAGCA------LGCAFCATGK 118 (336)
T ss_pred EEcCCCCEEEEEeccccCCCCEEEEeCCCCcC------CCCccccCCC
Confidence 355677777777653 22 499 7999999874
No 92
>TIGR01574 miaB-methiolase tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB. Hits to this model span all major groups of bacteria and eukaryotes, but not archaea, which are known to lack this particular tRNA modification. The enzyme from Thermotoga maritima has been cloned, expressed, spectroscopically characterized and shown to complement the E. coli MiaB enzyme.
Probab=28.09 E-value=1.1e+02 Score=28.83 Aligned_cols=33 Identities=18% Similarity=0.289 Sum_probs=25.5
Q ss_pred cCCchHhHHHHHHHHHhcCCCCCccccceeecCCCccCC
Q psy3055 145 RYNPYIQTRHRVEQLQQLGHSVDKEWEHVITTGNLAMNW 183 (219)
Q Consensus 145 ~yDPy~Q~~~Rl~qL~~~GH~vDKv~E~lIvmGGTf~~~ 183 (219)
++-|...+..-+++|.+.|.. | +++.|.++.+|
T Consensus 172 rsr~~e~I~~Ei~~l~~~g~~-----e-i~l~~~~~~~y 204 (438)
T TIGR01574 172 ISRPFDDILQEVQKLAEKGVR-----E-ITLLGQNVNAY 204 (438)
T ss_pred cccCHHHHHHHHHHHHHcCCe-----E-EEEEecccCCc
Confidence 456788888999999998742 6 77778888776
No 93
>PF14090 HTH_39: Helix-turn-helix domain
Probab=27.95 E-value=38 Score=24.31 Aligned_cols=21 Identities=24% Similarity=0.547 Sum_probs=18.8
Q ss_pred hHHHHHHHHHhcCCCCCcccc
Q psy3055 151 QTRHRVEQLQQLGHSVDKEWE 171 (219)
Q Consensus 151 Q~~~Rl~qL~~~GH~vDKv~E 171 (219)
...+|+..|++.||+++..|+
T Consensus 29 ~~~aRI~eLR~~G~~I~t~~~ 49 (70)
T PF14090_consen 29 RLAARISELRKKGYPIVTEWV 49 (70)
T ss_pred CHHHHHHHHHHcCCeeeEEEE
Confidence 467899999999999999975
No 94
>TIGR00238 KamA family protein. Note that the E. coli homolog was expressed in E. coli and purified and found not to display display lysine 2,3-aminomutase activity. Active site residues are found in 100 residue extension in B. subtilis. Name changed to KamA family protein.
Probab=27.90 E-value=1.6e+02 Score=26.97 Aligned_cols=41 Identities=12% Similarity=0.213 Sum_probs=22.9
Q ss_pred hHHHHHHHHHhcCCCCCccccceeecCCCccCCCCCCCcHHHHHHHHH
Q psy3055 151 QTRHRVEQLQQLGHSVDKEWEHVITTGNLAMNWMAPTCPSLWFQINLL 198 (219)
Q Consensus 151 Q~~~Rl~qL~~~GH~vDKv~E~lIvmGGTf~~~~~p~~Yq~~Fi~~~~ 198 (219)
++..=++.+.+ | ..+.| +++.||--+.+ +.+.-.+++..+-
T Consensus 146 ~~~~~i~~i~~--~--~~i~e-V~lsGGDPLl~--~d~~L~~ll~~L~ 186 (331)
T TIGR00238 146 KWQKALDYIAE--H--PEIIE-ILISGGDPLMA--KDHELEWLLKRLE 186 (331)
T ss_pred HHHHHHHHHHh--C--CCcCE-EEEECCccccC--CHHHHHHHHHHHH
Confidence 33344455543 2 23436 89999987666 5444455665554
No 95
>PF11845 DUF3365: Protein of unknown function (DUF3365); InterPro: IPR021796 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 198 to 657 amino acids in length.
Probab=27.90 E-value=1.1e+02 Score=24.77 Aligned_cols=71 Identities=24% Similarity=0.442 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHcC------CCCCCCHHHHHhhCChhHHHhhhhhhhhCCccccc--------CceeEEEeecCCCCCccc
Q psy3055 42 LNQMKTRISSKYG------LDTSPRLVDIIAAVPAEAKKILLPKLKAKPIRTAS--------GIAVVAVMCKPHRCPHIN 107 (219)
Q Consensus 42 L~~~k~~i~rky~------L~~~P~~~dIl~a~p~e~~~~L~~~L~~KPvRT~S--------GVavVAVMt~P~~CPHi~ 107 (219)
..++-.+++++.+ .+.-|+|.+ ..|++.++.++..++..+....+ |-..+-+| +|- -
T Consensus 74 ~~~i~~~~~~~~g~~~~r~~S~~prNp~---n~pd~~E~~~L~~f~~~~~~e~~~~~~~~~~g~~~~ry~-~pi-----~ 144 (188)
T PF11845_consen 74 AREISEELSKKSGNYSFRRVSLKPRNPE---NKPDEFEKEALEQFEKNPEDEYFEYVEVEINGKPYFRYA-RPI-----R 144 (188)
T ss_pred HHHHHHHHhhhccceEEEecccCCCCcC---CCCCHHHHHHHHHHHhCCCcCcceeeeeccCCCceEEEE-eeh-----h
Confidence 4555566677664 235677776 56666777777888888833322 33333333 332 2
Q ss_pred cCCCceeeCCCCCCC
Q psy3055 108 MTGNICVYCPGGPDS 122 (219)
Q Consensus 108 ~tgg~C~yCPggp~~ 122 (219)
+ +..|+-|.|.|+.
T Consensus 145 ~-~~~CL~CHg~~~~ 158 (188)
T PF11845_consen 145 V-EESCLSCHGDPDQ 158 (188)
T ss_pred c-chHHHHccCCccc
Confidence 2 4799999997753
No 96
>TIGR02495 NrdG2 anaerobic ribonucleoside-triphosphate reductase activating protein. This enzyme is a member of the radical-SAM family (pfam04055). It is often gene clustered with the class III (anaerobic) ribonucleotide triphosphate reductase (NrdD, TIGR02487) and presumably fulfills the identical function as NrdG which utilizes S-adenosyl methionine, an iron-sulfur cluster and a reductant (dihydroflavodoxin) to produce a glycine-centered radical in NrdD.
Probab=27.38 E-value=3.3e+02 Score=21.90 Aligned_cols=22 Identities=23% Similarity=0.617 Sum_probs=15.2
Q ss_pred CceeEEEeecCCCCCccccCCCceeeCCCC
Q psy3055 90 GIAVVAVMCKPHRCPHINMTGNICVYCPGG 119 (219)
Q Consensus 90 GVavVAVMt~P~~CPHi~~tgg~C~yCPgg 119 (219)
|..+..+.|. .|+ -.|.||...
T Consensus 15 g~~~~~~~t~--~Cn------l~C~~C~~~ 36 (191)
T TIGR02495 15 GKLAFTIFFQ--GCN------LKCPYCHNP 36 (191)
T ss_pred CCeEEEEEcC--CCC------CCCCCCCCc
Confidence 5544444554 999 699999864
No 97
>PRK05481 lipoyl synthase; Provisional
Probab=26.43 E-value=2.6e+02 Score=25.16 Aligned_cols=74 Identities=12% Similarity=0.157 Sum_probs=44.3
Q ss_pred eEEEeecCCCCCccccCCCceeeCCCCCCCCCCccccccCCCchhhHhHHHhcCCchHhHHHHHHHHHhcCCCCCccccc
Q psy3055 93 VVAVMCKPHRCPHINMTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRARYNPYIQTRHRVEQLQQLGHSVDKEWEH 172 (219)
Q Consensus 93 vVAVMt~P~~CPHi~~tgg~C~yCPggp~~~F~~spqSYtg~EPa~~RA~r~~yDPy~Q~~~Rl~qL~~~GH~vDKv~E~ 172 (219)
++|.|-----|+ +.|.||--.- . -+.| =+..++...++.+.+.|-. |
T Consensus 53 ~~~fi~is~GC~------~~C~FC~i~~-~----r~~s----------------~~~eeI~~ea~~l~~~G~k-----E- 99 (289)
T PRK05481 53 TATFMILGDICT------RRCPFCDVAT-G----RPLP----------------LDPDEPERVAEAVARMGLK-----Y- 99 (289)
T ss_pred eEEEEEeccccc------CCCCCceeCC-C----CCCC----------------CCHHHHHHHHHHHHHCCCC-----E-
Confidence 345555556899 7999994210 0 0122 2466788888899999852 6
Q ss_pred eeecCCCccCCCCCCCcHHHHHHHHHHhhc
Q psy3055 173 VITTGNLAMNWMAPTCPSLWFQINLLSRTQ 202 (219)
Q Consensus 173 lIvmGGTf~~~~~p~~Yq~~Fi~~~~~al~ 202 (219)
+++.||.-..+ |..-.+ .+.++++++.
T Consensus 100 I~L~gg~~~d~--~~~~~~-~l~~Ll~~I~ 126 (289)
T PRK05481 100 VVITSVDRDDL--PDGGAQ-HFAETIRAIR 126 (289)
T ss_pred EEEEEeeCCCc--ccccHH-HHHHHHHHHH
Confidence 88888875444 321112 3456666553
No 98
>PLN02951 Molybderin biosynthesis protein CNX2
Probab=26.39 E-value=1.2e+02 Score=28.19 Aligned_cols=30 Identities=20% Similarity=0.095 Sum_probs=19.5
Q ss_pred chHhHHHHHHHHHhcCCCCCccccceeecCCCccCC
Q psy3055 148 PYIQTRHRVEQLQQLGHSVDKEWEHVITTGNLAMNW 183 (219)
Q Consensus 148 Py~Q~~~Rl~qL~~~GH~vDKv~E~lIvmGGTf~~~ 183 (219)
++.++..-++++.++| +.+ +.+.||--+-+
T Consensus 91 s~eei~~~i~~~~~~G--v~~----I~~tGGEPllr 120 (373)
T PLN02951 91 SQDEIVRLAGLFVAAG--VDK----IRLTGGEPTLR 120 (373)
T ss_pred CHHHHHHHHHHHHHCC--CCE----EEEECCCCcch
Confidence 5677777788888776 332 56778864433
No 99
>PRK14329 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=26.34 E-value=87 Score=29.99 Aligned_cols=34 Identities=21% Similarity=0.140 Sum_probs=25.4
Q ss_pred hcCCchHhHHHHHHHHHhcCCCCCccccceeecCCCccCC
Q psy3055 144 ARYNPYIQTRHRVEQLQQLGHSVDKEWEHVITTGNLAMNW 183 (219)
Q Consensus 144 ~~yDPy~Q~~~Rl~qL~~~GH~vDKv~E~lIvmGGTf~~~ 183 (219)
.++-|..++-.-++.|.+.|.. | +.+.|.++.++
T Consensus 194 ~rsrs~e~Vv~Ei~~l~~~g~~-----e-I~l~~~~~~~y 227 (467)
T PRK14329 194 ERSRDPESILNEVRDLFAKGYK-----E-VTLLGQNVDSY 227 (467)
T ss_pred cccCCHHHHHHHHHHHHHCCCe-----E-EEEEeeccccc
Confidence 3566778888899999887732 6 77888777766
No 100
>PRK14332 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=26.02 E-value=1.1e+02 Score=29.33 Aligned_cols=33 Identities=18% Similarity=0.196 Sum_probs=26.1
Q ss_pred cCCchHhHHHHHHHHHhcCCCCCccccceeecCCCccCC
Q psy3055 145 RYNPYIQTRHRVEQLQQLGHSVDKEWEHVITTGNLAMNW 183 (219)
Q Consensus 145 ~yDPy~Q~~~Rl~qL~~~GH~vDKv~E~lIvmGGTf~~~ 183 (219)
++-|-..+-.-+++|...| +-| +++.|.+|++|
T Consensus 181 rsr~~e~Iv~Ei~~l~~~G-----~ke-i~l~~~~~~~y 213 (449)
T PRK14332 181 RSRDPKSIVREIQDLQEKG-----IRQ-VTLLGQNVNSY 213 (449)
T ss_pred ccCCHHHHHHHHHHHHHCC-----CeE-EEEecccCCcc
Confidence 4556778888888888877 326 89999999998
No 101
>COG0635 HemN Coproporphyrinogen III oxidase and related Fe-S oxidoreductases [Coenzyme metabolism]
Probab=25.88 E-value=98 Score=29.53 Aligned_cols=51 Identities=10% Similarity=0.013 Sum_probs=28.3
Q ss_pred CchHhHHHH-H-HHHHhcCCCCCccccceeecCCCccCCCCCCCcHHHHHHHHHHhh
Q psy3055 147 NPYIQTRHR-V-EQLQQLGHSVDKEWEHVITTGNLAMNWMAPTCPSLWFQINLLSRT 201 (219)
Q Consensus 147 DPy~Q~~~R-l-~qL~~~GH~vDKv~E~lIvmGGTf~~~~~p~~Yq~~Fi~~~~~al 201 (219)
|.|....-+ + .+....|++ -+| ..+.+=|||-+.+ +.+=-+..+..+.+.+
T Consensus 65 ~~Y~~aL~~Ei~~~~~~~~~~-~~v-~ti~~GGGTPslL--~~~~l~~ll~~l~~~~ 117 (416)
T COG0635 65 DEYLDALLEEIELVAALLGGQ-REV-KTIYFGGGTPSLL--SPEQLERLLKALRELF 117 (416)
T ss_pred HHHHHHHHHHHHHHHhhcCCC-CeE-EEEEECCCccccC--CHHHHHHHHHHHHHhc
Confidence 445554444 2 233344554 445 7688999999888 4444444444444444
No 102
>PRK05927 hypothetical protein; Provisional
Probab=25.80 E-value=1.8e+02 Score=27.13 Aligned_cols=69 Identities=13% Similarity=0.141 Sum_probs=46.2
Q ss_pred CCCCccccCCCceeeCCCCCCCCCCccccccCCCchhhHhHHHhcCCchHhHHHHHHHHHhcCCCCCccccceeecCCCc
Q psy3055 101 HRCPHINMTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRARYNPYIQTRHRVEQLQQLGHSVDKEWEHVITTGNLA 180 (219)
Q Consensus 101 ~~CPHi~~tgg~C~yCPggp~~~F~~spqSYtg~EPa~~RA~r~~yDPy~Q~~~Rl~qL~~~GH~vDKv~E~lIvmGGTf 180 (219)
-.|. ..|.||--.... ..+..|+ =...|+...+++..+.|-. | +.+.||.=
T Consensus 53 n~C~------~~C~fCaf~~~~---~~~~~y~--------------ls~eei~~~a~~~~~~G~~-----~-i~i~gG~~ 103 (350)
T PRK05927 53 NICK------IDCTFCAFYRKP---HSSDAYL--------------LSFDEFRSLMQRYVSAGVK-----T-VLLQGGVH 103 (350)
T ss_pred hhhh------cCCccCCccCCC---CCccccc--------------cCHHHHHHHHHHHHHCCCC-----E-EEEeCCCC
Confidence 3688 899999743211 1222221 1457888999999999852 5 66679998
Q ss_pred cCCCCCCCcHHHHHHHHHHh
Q psy3055 181 MNWMAPTCPSLWFQINLLSR 200 (219)
Q Consensus 181 ~~~~~p~~Yq~~Fi~~~~~a 200 (219)
..+ +.+|-..-++.+-+.
T Consensus 104 p~~--~~e~~~~~i~~ik~~ 121 (350)
T PRK05927 104 PQL--GIDYLEELVRITVKE 121 (350)
T ss_pred CCC--CHHHHHHHHHHHHHH
Confidence 887 777777766666554
No 103
>PTZ00313 inosine-adenosine-guanosine-nucleoside hydrolase; Provisional
Probab=25.62 E-value=32 Score=31.46 Aligned_cols=16 Identities=19% Similarity=0.165 Sum_probs=12.5
Q ss_pred CCCccccceeecCCCcc
Q psy3055 165 SVDKEWEHVITTGNLAM 181 (219)
Q Consensus 165 ~vDKv~E~lIvmGGTf~ 181 (219)
-..|| +.++||||+|.
T Consensus 154 ~~~~i-k~iviMGG~~~ 169 (326)
T PTZ00313 154 FTKKV-EECVIMGGAVD 169 (326)
T ss_pred HHHhc-CEEEEeCCccc
Confidence 34677 55999999985
No 104
>cd02651 nuc_hydro_IU_UC_XIUA nuc_hydro_IU_UC_XIUA: inosine-uridine preferring, xanthosine-inosine-uridine-adenosine-preferring and, uridine-cytidine preferring nucleoside hydrolases. Nucleoside hydrolases cleave the N-glycosidic bond in nucleosides generating ribose and the respective base. These enzymes vary in their substrate specificity. This group contains proteins similar to nucleoside hydrolases which hydrolyze both pyrimidine and purine ribonucleosides: the inosine-uridine preferring nucleoside hydrolase from Crithidia fasciculata, the inosine-uridine-xanthosine preferring nucleoside hydrolase RihC from Escherichia coli and the xanthosine-inosine-uridine-adenosine-preferring nucleoside hydrolase RihC from Salmonella enterica serovar Typhimurium. This group also contains proteins similar to the pyrimidine-specific uridine-cytidine preferring nucleoside hydrolases URH1 from Saccharomyces cerevisiae, E. coli RihA and E. coli RihB. E. coli RihA is equally efficient with uridine a
Probab=25.30 E-value=30 Score=30.82 Aligned_cols=14 Identities=7% Similarity=0.318 Sum_probs=11.4
Q ss_pred CCccccceeecCCCc
Q psy3055 166 VDKEWEHVITTGNLA 180 (219)
Q Consensus 166 vDKv~E~lIvmGGTf 180 (219)
..|| .+++||||+|
T Consensus 138 ~~~i-k~iviMGG~~ 151 (302)
T cd02651 138 AERI-KEIVLMGGAL 151 (302)
T ss_pred Hhhc-CEEEEecCCc
Confidence 3577 6699999998
No 105
>TIGR02491 NrdG anaerobic ribonucleoside-triphosphate reductase activating protein. This enzyme is a member of the radical-SAM family (pfam04055) and utilizes S-adenosyl methionine, an iron-sulfur cluster and a reductant (dihydroflavodoxin ) to produce a glycine-centered radical in the class III (anaerobic) ribonucleotide triphosphate reductase (NrdD, TIGR02487). The two components form an alpha-2/beta-2 heterodimer.
Probab=25.19 E-value=3.7e+02 Score=21.71 Aligned_cols=21 Identities=33% Similarity=0.631 Sum_probs=13.8
Q ss_pred cCceeEEEeecCCCCCccccCCCceeeCCC
Q psy3055 89 SGIAVVAVMCKPHRCPHINMTGNICVYCPG 118 (219)
Q Consensus 89 SGVavVAVMt~P~~CPHi~~tgg~C~yCPg 118 (219)
.|+.++..+ ..||+ .|.||-+
T Consensus 14 ~G~r~~if~---~gCnl------~C~~C~n 34 (154)
T TIGR02491 14 EGIRVSLFV---AGCKH------HCEGCFN 34 (154)
T ss_pred CCcEEEEEE---CCCCC------CCcCCCc
Confidence 455553333 47995 9999975
No 106
>cd01518 RHOD_YceA Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YceA, Bacillus subtilis YbfQ, and similar uncharacterized proteins.
Probab=24.82 E-value=89 Score=22.59 Aligned_cols=20 Identities=15% Similarity=0.215 Sum_probs=12.7
Q ss_pred HHHHHHhcCCCCCccccceeecCCC
Q psy3055 155 RVEQLQQLGHSVDKEWEHVITTGNL 179 (219)
Q Consensus 155 Rl~qL~~~GH~vDKv~E~lIvmGGT 179 (219)
+...|+++||. +| +++-||.
T Consensus 77 a~~~L~~~G~~--~v---~~l~GG~ 96 (101)
T cd01518 77 ASAYLKERGFK--NV---YQLKGGI 96 (101)
T ss_pred HHHHHHHhCCc--ce---eeechhH
Confidence 34567888985 45 5555663
No 107
>PLN02717 uridine nucleosidase
Probab=24.72 E-value=31 Score=31.36 Aligned_cols=16 Identities=13% Similarity=0.212 Sum_probs=12.5
Q ss_pred CCccccceeecCCCccC
Q psy3055 166 VDKEWEHVITTGNLAMN 182 (219)
Q Consensus 166 vDKv~E~lIvmGGTf~~ 182 (219)
..|| +++++|||+|..
T Consensus 141 ~~~i-k~iviMGG~~~~ 156 (316)
T PLN02717 141 AKKV-GQIVVLGGAFFV 156 (316)
T ss_pred Hhhc-CEEEEeCCCcCC
Confidence 5588 559999999853
No 108
>KOG0820|consensus
Probab=24.25 E-value=64 Score=30.72 Aligned_cols=55 Identities=18% Similarity=0.164 Sum_probs=37.5
Q ss_pred HhcCCchHhHHHHHHHHHhcCC----CCCccccceeec-CCCccCCCCCCCcHHH--HHHHHHHh
Q psy3055 143 RARYNPYIQTRHRVEQLQQLGH----SVDKEWEHVITT-GNLAMNWMAPTCPSLW--FQINLLSR 200 (219)
Q Consensus 143 r~~yDPy~Q~~~Rl~qL~~~GH----~vDKv~E~lIvm-GGTf~~~~~p~~Yq~~--Fi~~~~~a 200 (219)
-.+||-|.|..+|++-+-.-|- +.-|| |.=.|- ==--.-- |.+|.|| |++.||-.
T Consensus 174 Ycrlsin~q~~a~v~~i~KVgknnFrPpPkV-essvVriepk~P~p--p~~~~ewdg~lri~F~r 235 (315)
T KOG0820|consen 174 YCRLSINVQLLARVTHIMKVGKNNFRPPPKV-ESSVVRIEPKNPRP--PVDFHEWDGLLRICFLR 235 (315)
T ss_pred hceeehhhHHhhcchhheeecccccCCCCcc-ccceeEeecCCCCC--ccchHHHHHHHHHHHHH
Confidence 3578999999999999999998 66777 610000 0000012 6789999 99999843
No 109
>PF01156 IU_nuc_hydro: Inosine-uridine preferring nucleoside hydrolase; InterPro: IPR001910 Inosine-uridine preferring nucleoside hydrolase (3.2.2.1 from EC) (IU-nucleoside hydrolase or IUNH) is an enzyme first identified in protozoan [] that catalyses the hydrolysis of all of the commonly occuring purine and pyrimidine nucleosides into ribose and the associated base, but has a preference for inosine and uridine as substrates. This enzyme is important for these parasitic organisms, which are deficient in de novo synthesis of purines, to salvage the host purine nucleosides. IUNH from Crithidia fasciculata has been sequenced and characterised, it is an homotetrameric enzyme of subunits of 34 Kd. An histidine has been shown to be important for the catalytic mechanism, it acts as a proton donor to activate the hypoxanthine leaving group. A highly conserved region located in the N-terminal extremity contains four conserved aspartates that have been shown [] to be located in the active site cavity. IUNH is evolutionary related to a number of uncharacterised proteins from various biological sources. This entry represents the structural domain of IUNH.; PDB: 1EZR_D 2MAS_B 1MAS_A 3MKM_C 3MKN_C 2C40_A 3T8J_A 2FF2_B 1KIE_A 2FF1_A ....
Probab=24.21 E-value=35 Score=30.00 Aligned_cols=17 Identities=12% Similarity=0.139 Sum_probs=11.0
Q ss_pred CCCccccceeecCCCccC
Q psy3055 165 SVDKEWEHVITTGNLAMN 182 (219)
Q Consensus 165 ~vDKv~E~lIvmGGTf~~ 182 (219)
-.+|| +++++|||.|..
T Consensus 142 ~~~~i-~~iviMGG~~~~ 158 (312)
T PF01156_consen 142 IAKKI-KRIVIMGGAFDG 158 (312)
T ss_dssp HHGGE-EEEEEE---SSS
T ss_pred HHhhc-eEEEEECCcccc
Confidence 45678 669999999985
No 110
>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ]. This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane
Probab=24.01 E-value=46 Score=33.74 Aligned_cols=18 Identities=17% Similarity=0.167 Sum_probs=15.3
Q ss_pred HHHHHHHHHhhccccccc
Q psy3055 191 LWFQINLLSRTQWKKCNQ 208 (219)
Q Consensus 191 ~~Fi~~~~~al~~~~~~~ 208 (219)
..|+-.+.|.++|++|..
T Consensus 458 ~~~vL~lVD~fT~~~C~~ 475 (544)
T PF13000_consen 458 RTFVLWLVDYFTVATCTV 475 (544)
T ss_pred HHHHHHHhhhccccccCC
Confidence 348999999999999953
No 111
>PRK10768 ribonucleoside hydrolase RihC; Provisional
Probab=23.61 E-value=34 Score=30.79 Aligned_cols=15 Identities=13% Similarity=0.062 Sum_probs=12.1
Q ss_pred CCccccceeecCCCcc
Q psy3055 166 VDKEWEHVITTGNLAM 181 (219)
Q Consensus 166 vDKv~E~lIvmGGTf~ 181 (219)
.+|| +.++||||+|.
T Consensus 140 ~~~i-~~iviMGG~~~ 154 (304)
T PRK10768 140 KPYI-KRIVLMGGSAG 154 (304)
T ss_pred Hhhc-CEEEEecCCcC
Confidence 5678 55999999984
No 112
>PF01074 Glyco_hydro_38: Glycosyl hydrolases family 38 N-terminal domain; InterPro: IPR000602 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 38 GH38 from CAZY comprises enzymes with only one known activity; alpha-mannosidase (3.2.1.24 from EC) (3.2.1.114 from EC). Lysosomal alpha-mannosidase is necessary for the catabolism of N-linked carbohydrates released during glycoprotein turnover. The enzyme catalyses the hydrolysis of terminal, non-reducing alpha-D-mannose residues in alpha-D-mannosides, and can cleave all known types of alpha-mannosidic linkages. Defects in the gene cause lysosomal alpha-mannosidosis (AM), a lysosomal storage disease characterised by the accumulation of unbranched oligo-saccharide chains.; GO: 0004559 alpha-mannosidase activity, 0005975 carbohydrate metabolic process; PDB: 2WYI_A 2WYH_A 1O7D_A 3CZN_A 2FYV_A 3D50_A 3EJU_A 3EJS_A 3DX3_A 3BVX_A ....
Probab=23.47 E-value=1.3e+02 Score=25.92 Aligned_cols=65 Identities=12% Similarity=0.107 Sum_probs=42.9
Q ss_pred CchhhHhHHHhcCCchHhHHHHHHHHHhcCCCCCccccceeecCCCccCCCCCCCcHHHHHHHHHHhhcccccccC
Q psy3055 134 YEPTSMRAIRARYNPYIQTRHRVEQLQQLGHSVDKEWEHVITTGNLAMNWMAPTCPSLWFQINLLSRTQWKKCNQG 209 (219)
Q Consensus 134 ~EPa~~RA~r~~yDPy~Q~~~Rl~qL~~~GH~vDKv~E~lIvmGGTf~~~~~p~~Yq~~Fi~~~~~al~~~~~~~~ 209 (219)
.|....+-.-.. +| ..+.|+++|-+.|- +.++||.|..--.....-|.+|+++..+..|-+.+-|
T Consensus 47 ~~~~~~~~~~~~-~p--~~~~~~~~lv~~Gr--------i~~vgg~~~~~D~~l~~~Eslirql~~G~~~~~~~fg 111 (275)
T PF01074_consen 47 GQTAYLEDYLED-AP--EEFKRIKKLVKEGR--------IEIVGGWYVQPDENLPSGESLIRQLLYGHKYLRKEFG 111 (275)
T ss_dssp TBCHHHHHHHHC-SG--HHHHHHHHHHHTTS--------EEESSSBSS-B-SSSS-HHHHHHHHHHHHHHHHHHHT
T ss_pred chhHHHHHHHHh-CC--HHHHHHHHHHHhce--------eEEeCceeeeccccCCCHHHHHHHHhhhHHHHHHhcC
Confidence 344444444444 44 45677799999883 5578999975422456778899999999997766555
No 113
>cd02647 nuc_hydro_TvIAG nuc_hydro_ TvIAG: Nucleoside hydrolases similar to the Inosine-adenosine-guanosine-preferring nucleoside hydrolase from Trypanosoma vivax. Nucleoside hydrolases cleave the N-glycosidic bond in nucleosides generating ribose and the respective base. Nucleoside hydrolases vary in their substrate specificity. This group contains eukaryotic and bacterial proteins similar to the purine specific inosine-adenosine-guanosine-preferring nucleoside hydrolase (IAG-NH) from T. vivax. T. vivax IAG-NH is of the order of a thousand to ten thousand fold more specific towards the naturally occurring purine nucleosides, than towards the pyrimidine nucleosides.
Probab=23.44 E-value=33 Score=31.36 Aligned_cols=18 Identities=17% Similarity=0.023 Sum_probs=13.3
Q ss_pred CCCCccccceeecCCCccC
Q psy3055 164 HSVDKEWEHVITTGNLAMN 182 (219)
Q Consensus 164 H~vDKv~E~lIvmGGTf~~ 182 (219)
--..|| .+++||||+|..
T Consensus 143 ~~~~~i-~~iviMGG~~~~ 160 (312)
T cd02647 143 DISSNI-EEVYIMGGGVDA 160 (312)
T ss_pred HHHhhc-CEEEEeCCccCC
Confidence 345678 559999999853
No 114
>PRK10443 rihA ribonucleoside hydrolase 1; Provisional
Probab=23.36 E-value=35 Score=30.96 Aligned_cols=17 Identities=12% Similarity=0.090 Sum_probs=13.1
Q ss_pred CCCCccccceeecCCCcc
Q psy3055 164 HSVDKEWEHVITTGNLAM 181 (219)
Q Consensus 164 H~vDKv~E~lIvmGGTf~ 181 (219)
.-.+|| ++|+||||+|.
T Consensus 139 ~~~~~i-~~iviMGG~~~ 155 (311)
T PRK10443 139 ELHSKI-ARIVIMGGAMG 155 (311)
T ss_pred hhhhhh-CEEEEccCCCC
Confidence 345777 55999999984
No 115
>PF11181 YflT: Heat induced stress protein YflT
Probab=23.32 E-value=95 Score=23.64 Aligned_cols=24 Identities=25% Similarity=0.311 Sum_probs=20.7
Q ss_pred CCchHhHHHHHHHHHhcCCCCCcc
Q psy3055 146 YNPYIQTRHRVEQLQQLGHSVDKE 169 (219)
Q Consensus 146 yDPy~Q~~~Rl~qL~~~GH~vDKv 169 (219)
|+=-.++...+++|++.|++.|.+
T Consensus 6 ~~~~~E~~~~I~~L~~~Gy~~ddI 29 (103)
T PF11181_consen 6 YDNEEEALSAIEELKAQGYSEDDI 29 (103)
T ss_pred ECCHHHHHHHHHHHHHcCCCcccE
Confidence 445568889999999999999988
No 116
>PF12044 Metallopep: Putative peptidase family; InterPro: IPR021917 This family of proteins is functionally uncharacterised. However, it does contain an HEXXH motif characteristic of metallopeptidases. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 625 to 773 amino acids in length.
Probab=23.14 E-value=36 Score=33.14 Aligned_cols=60 Identities=27% Similarity=0.336 Sum_probs=43.7
Q ss_pred ecCCCCCccccCCCceeeCCCCC-CCCCCccccccCCCchhhHhHHHhcCCch----HhHHHHHHHHHhcCCCCC
Q psy3055 98 CKPHRCPHINMTGNICVYCPGGP-DSDFEYSTQSYTGYEPTSMRAIRARYNPY----IQTRHRVEQLQQLGHSVD 167 (219)
Q Consensus 98 t~P~~CPHi~~tgg~C~yCPggp-~~~F~~spqSYtg~EPa~~RA~r~~yDPy----~Q~~~Rl~qL~~~GH~vD 167 (219)
-+-+-||| +|.|. .-||..-.+|||..||.+.|-.+.+-.|. .=..+||++|+-.=|+.=
T Consensus 325 GH~fg~pH----------~~~GIM~Rdy~~~NR~F~~~E~~~~rtk~~g~~~~~~~~ec~whrld~lrf~~hP~F 389 (423)
T PF12044_consen 325 GHLFGCPH----------QEDGIMLRDYDRLNRSFTTREPYSTRTKSKGLRPCLPKDECHWHRLDALRFRYHPSF 389 (423)
T ss_pred HHhcCCCC----------CCCCeeeCCchhhcceeeccccccccccCCCcCcccCCccccccHhhhHhhhcCccc
Confidence 45567887 66554 34566789999999999998888763333 345689999998877643
No 117
>PRK14455 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=22.40 E-value=4.5e+02 Score=24.62 Aligned_cols=12 Identities=25% Similarity=0.833 Sum_probs=10.5
Q ss_pred CCCccccCCCceeeCCCC
Q psy3055 102 RCPHINMTGNICVYCPGG 119 (219)
Q Consensus 102 ~CPHi~~tgg~C~yCPgg 119 (219)
.|| -.|.||-.|
T Consensus 118 GC~------~~C~FC~t~ 129 (356)
T PRK14455 118 GCR------IGCTFCAST 129 (356)
T ss_pred CCC------CCCCcCCCC
Confidence 799 799999776
No 118
>cd02654 nuc_hydro_CjNH nuc_hydro_CjNH. Nucleoside hydrolases similar to Campylobacter jejuni nucleoside hydrolase. This group contains eukaryotic and bacterial proteins similar to C. jejuni nucleoside hydrolase. Nucleoside hydrolases cleave the N-glycosidic bond in nucleosides generating ribose and the respective base. These enzymes vary in their substrate specificity. C. jejuni nucleoside hydrolase is inactive against natural nucleosides or against common nucleoside analogues.
Probab=22.25 E-value=36 Score=30.96 Aligned_cols=15 Identities=7% Similarity=0.122 Sum_probs=11.7
Q ss_pred CCccccceeecCCCcc
Q psy3055 166 VDKEWEHVITTGNLAM 181 (219)
Q Consensus 166 vDKv~E~lIvmGGTf~ 181 (219)
..|| ++++||||+|.
T Consensus 153 ~~~i-~~iviMGG~~~ 167 (318)
T cd02654 153 APLA-KELVIMGGYLD 167 (318)
T ss_pred HHhC-CEEEEeCCCcc
Confidence 3677 55999999983
No 119
>cd02653 nuc_hydro_3 NH_3: A subgroup of nucleoside hydrolases. This group contains eukaryotic and bacterial proteins similar to nucleoside hydrolases. Nucleoside hydrolases cleave the N-glycosidic bond in nucleosides generating ribose and the respective base. These enzymes vary in their substrate specificity.
Probab=21.98 E-value=36 Score=31.00 Aligned_cols=16 Identities=6% Similarity=0.000 Sum_probs=12.5
Q ss_pred CCccccceeecCCCccC
Q psy3055 166 VDKEWEHVITTGNLAMN 182 (219)
Q Consensus 166 vDKv~E~lIvmGGTf~~ 182 (219)
..|| +++++|||+|..
T Consensus 137 ~~~i-k~iviMGG~~~~ 152 (320)
T cd02653 137 PRLL-RRLVIMGGAFNS 152 (320)
T ss_pred HHhc-CEEEEECCCcCC
Confidence 4677 559999999854
No 120
>PF10890 DUF2741: Protein of unknown function (DUF2741); InterPro: IPR020101 This entry represents subunit 8 of the Cytochrome b-c1 complex. The ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex) is part of the mitochondrial respiratory chain. This subunit, together with cytochrome b, binds to ubiquinone. In plants, the b-c1 complex contains 10 subunits: 3 respiratory subunits, 2 core proteins and 5 low-molecular weight proteins.
Probab=21.96 E-value=22 Score=27.31 Aligned_cols=46 Identities=22% Similarity=0.277 Sum_probs=30.3
Q ss_pred CCCchhhHhHHHhcCCchHhHHHHHHHHHhcCCCCCccccceeecCCCccCCCCCCCcHHHHHHHHHHhh
Q psy3055 132 TGYEPTSMRAIRARYNPYIQTRHRVEQLQQLGHSVDKEWEHVITTGNLAMNWMAPTCPSLWFQINLLSRT 201 (219)
Q Consensus 132 tg~EPa~~RA~r~~yDPy~Q~~~Rl~qL~~~GH~vDKv~E~lIvmGGTf~~~~~p~~Yq~~Fi~~~~~al 201 (219)
+|.-|.-+||.=..--||.| =||.|+|..+ |..--..|-.+-.+|+
T Consensus 1 Mgk~pvrlkeVvY~LSP~qq----------------------~Vm~GLwKDl--p~ki~hk~~enwv~a~ 46 (72)
T PF10890_consen 1 MGKQPVRLKEVVYALSPFQQ----------------------KVMPGLWKDL--PKKIHHKFSENWVSAT 46 (72)
T ss_pred CCCCccchhHheeeeChhhh----------------------hhhhhhhhhc--HHHHHHHHhhcceeeE
Confidence 35567777777777777766 2678888888 7666555544444443
No 121
>COG2973 TrpR Trp operon repressor [Transcription]
Probab=21.56 E-value=1.4e+02 Score=24.47 Aligned_cols=36 Identities=25% Similarity=0.230 Sum_probs=28.8
Q ss_pred HHHHHHcCC--CCCCCHHHHHhhCChhHHHhhhhhhhh
Q psy3055 47 TRISSKYGL--DTSPRLVDIIAAVPAEAKKILLPKLKA 82 (219)
Q Consensus 47 ~~i~rky~L--~~~P~~~dIl~a~p~e~~~~L~~~L~~ 82 (219)
++++.++|. .++-+-+..|...|++.+..|...|..
T Consensus 64 REi~~~LgvsiAtITRGSN~LK~~~~~~k~~L~~~l~~ 101 (103)
T COG2973 64 REIAQKLGVSIATITRGSNSLKTADPEFKQWLEKVLLK 101 (103)
T ss_pred HHHHHHhCcchhhhccchhhhccCCHHHHHHHHHHhcc
Confidence 577888885 478888888999999999888776643
No 122
>PRK06267 hypothetical protein; Provisional
Probab=21.30 E-value=4.4e+02 Score=24.28 Aligned_cols=65 Identities=9% Similarity=0.240 Sum_probs=40.2
Q ss_pred ceeEEEeecCCCCC-ccccCCCceeeCCCCCCCCCCccccccCCCchhhHhHHHhcCCchHhHHHHHHHHHhcCCCCCcc
Q psy3055 91 IAVVAVMCKPHRCP-HINMTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRARYNPYIQTRHRVEQLQQLGHSVDKE 169 (219)
Q Consensus 91 VavVAVMt~P~~CP-Hi~~tgg~C~yCPggp~~~F~~spqSYtg~EPa~~RA~r~~yDPy~Q~~~Rl~qL~~~GH~vDKv 169 (219)
|..-+++-..--|+ | +.|.||--.... +.+. .| . ...-+-.++...++++.+.| ++ .
T Consensus 25 v~l~~~l~~S~~C~l~-----~~C~FC~~s~~~------~~i~--~~--~----~~~~s~eeI~eea~~~~~~G--v~-~ 82 (350)
T PRK06267 25 VSLERALFLGWYCNLK-----GPCKFCYMSTQK------DKIK--DP--L----KARRRVESILAEAILMKRIG--WK-L 82 (350)
T ss_pred EEEEEeeeecCCCcCC-----CCCcCCCCcccC------CccC--cc--c----cccCCHHHHHHHHHHHHHcC--CC-E
Confidence 44555565567899 7 799999532211 0000 01 1 11237789999999999999 33 4
Q ss_pred ccceeecCCCc
Q psy3055 170 WEHVITTGNLA 180 (219)
Q Consensus 170 ~E~lIvmGGTf 180 (219)
++|.||..
T Consensus 83 ---~~lsgG~~ 90 (350)
T PRK06267 83 ---EFISGGYG 90 (350)
T ss_pred ---EEEecCCC
Confidence 66788865
No 123
>cd02650 nuc_hydro_CaPnhB NH_hydro_CaPnhB: A subgroup of nucleoside hydrolases similar to Corynebacterium ammoniagenes Purine/pyrimidine nucleoside hydrolase (pnhB). Nucleoside hydrolases cleave the N-glycosidic bond in nucleosides generating ribose and the respective base. These enzymes vary in their substrate specificity.
Probab=21.02 E-value=39 Score=30.12 Aligned_cols=16 Identities=13% Similarity=0.119 Sum_probs=12.5
Q ss_pred CCccccceeecCCCccC
Q psy3055 166 VDKEWEHVITTGNLAMN 182 (219)
Q Consensus 166 vDKv~E~lIvmGGTf~~ 182 (219)
..|| +++++|||.+..
T Consensus 139 ~~~i-k~iviMGG~~~~ 154 (304)
T cd02650 139 AKLV-KQVVVMGGAFTV 154 (304)
T ss_pred Hhhc-CEEEEeCccccC
Confidence 4677 669999999854
No 124
>PF11784 DUF3320: Protein of unknown function (DUF3320); InterPro: IPR021754 This family is conserved in Proteobacteria and Chlorobi families. Many members are annotated as being putative DNA helicase-related proteins.
Probab=20.93 E-value=2.9e+02 Score=19.05 Aligned_cols=36 Identities=14% Similarity=0.372 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHhhccCcccHHHHHHHHHHHcCCCCC
Q psy3055 20 VLTIGEIIQELLVAHKECKDVNLNQMKTRISSKYGLDTS 58 (219)
Q Consensus 20 ~~~~~eii~~ii~~~~~~~~~~L~~~k~~i~rky~L~~~ 58 (219)
...+.+.+.+|++. ...+....+-+++++.+||+..
T Consensus 10 ~~~L~~~i~~Iv~~---EgPI~~~~L~~Ri~~a~G~~R~ 45 (52)
T PF11784_consen 10 RPQLARMIRQIVEV---EGPIHEDELARRIARAWGLSRA 45 (52)
T ss_pred HHHHHHHHHHHHHH---cCCccHHHHHHHHHHHcCcccc
Confidence 44556666666654 5678999999999999998743
No 125
>PRK14334 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=20.69 E-value=1.5e+02 Score=28.07 Aligned_cols=32 Identities=19% Similarity=0.127 Sum_probs=23.3
Q ss_pred CCchHhHHHHHHHHHhcCCCCCccccceeecCCCccCC
Q psy3055 146 YNPYIQTRHRVEQLQQLGHSVDKEWEHVITTGNLAMNW 183 (219)
Q Consensus 146 yDPy~Q~~~Rl~qL~~~GH~vDKv~E~lIvmGGTf~~~ 183 (219)
.-|..++..-++.|.+.|. | | +++.|.++.+|
T Consensus 166 sr~~e~Iv~Ei~~l~~~G~---k--e-I~l~g~~~~~y 197 (440)
T PRK14334 166 SRHPDLILRELELLKAAGV---Q--E-VTLLGQNVNSY 197 (440)
T ss_pred cCCHHHHHHHHHHHHHCCC---e--E-EEEEecccccc
Confidence 3467888888999988873 1 5 77777777665
No 126
>PRK14333 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=20.35 E-value=2e+02 Score=27.30 Aligned_cols=31 Identities=19% Similarity=0.187 Sum_probs=21.6
Q ss_pred CchHhHHHHHHHHHhcCCCCCccccceeecCCCccCC
Q psy3055 147 NPYIQTRHRVEQLQQLGHSVDKEWEHVITTGNLAMNW 183 (219)
Q Consensus 147 DPy~Q~~~Rl~qL~~~GH~vDKv~E~lIvmGGTf~~~ 183 (219)
-|...+..-+++|.+.|. -| +.+.|-++.+|
T Consensus 177 r~~e~V~~Ei~~l~~~g~-----ke-i~l~~~~~~~y 207 (448)
T PRK14333 177 RTPEAIRAEIEELAAQGY-----KE-ITLLGQNIDAY 207 (448)
T ss_pred cCHHHHHHHHHHHHHCCC-----cE-EEEEecccchh
Confidence 355788888888887773 25 77777666654
No 127
>PRK14463 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=20.07 E-value=1.8e+02 Score=27.13 Aligned_cols=29 Identities=31% Similarity=0.591 Sum_probs=19.1
Q ss_pred ccccCceeEEEee-cC----------CCCCccccCCCceeeCCCCC
Q psy3055 86 RTASGIAVVAVMC-KP----------HRCPHINMTGNICVYCPGGP 120 (219)
Q Consensus 86 RT~SGVavVAVMt-~P----------~~CPHi~~tgg~C~yCPggp 120 (219)
++.-|-.|=||.- .+ -.|+ -.|.||..|.
T Consensus 85 ~~~dg~~iE~V~~~~~~~~t~cvSsq~GC~------~~C~FC~tg~ 124 (349)
T PRK14463 85 RLEDGNAVESVLIPDEDRNTLCISSQVGCA------MGCAFCLTGT 124 (349)
T ss_pred EcCCCCeEEEEEEEecCCcEEEEEecCCcC------CCCccCCCCC
Confidence 4556666666642 12 3699 6999998763
No 128
>TIGR02109 PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E. This model describes coenzyme PQQ biosynthesis protein E, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases.
Probab=20.02 E-value=2e+02 Score=25.81 Aligned_cols=29 Identities=14% Similarity=0.123 Sum_probs=20.1
Q ss_pred hHhHHHHHHHHHhcCCCCCccccceeecCCCccCC
Q psy3055 149 YIQTRHRVEQLQQLGHSVDKEWEHVITTGNLAMNW 183 (219)
Q Consensus 149 y~Q~~~Rl~qL~~~GH~vDKv~E~lIvmGGTf~~~ 183 (219)
..++..-++++.++| +.. +.+.||--+-.
T Consensus 39 ~e~~~~ii~~~~~~g-----~~~-v~~~GGEPll~ 67 (358)
T TIGR02109 39 TEEWTDVLTQAAELG-----VLQ-LHFSGGEPLAR 67 (358)
T ss_pred HHHHHHHHHHHHhcC-----CcE-EEEeCcccccc
Confidence 456666778888876 314 77889987655
Done!