Query psy3055
Match_columns 219
No_of_seqs 126 out of 232
Neff 3.1
Searched_HMMs 29240
Date Sat Aug 17 00:34:05 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3055.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/3055hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1olt_A Oxygen-independent copr 81.2 1.3 4.5E-05 39.9 4.1 46 151-200 88-133 (457)
2 3iix_A Biotin synthetase, puta 77.9 6.6 0.00023 32.9 7.2 74 95-199 55-128 (348)
3 3c8f_A Pyruvate formate-lyase 66.2 4.7 0.00016 31.2 3.3 16 96-119 24-39 (245)
4 1uuz_A IVY, inhibitor of verte 64.9 5.1 0.00018 32.5 3.4 47 57-105 2-66 (137)
5 1r30_A Biotin synthase; SAM ra 58.4 49 0.0017 28.4 8.7 44 99-163 72-115 (369)
6 1tv8_A MOAA, molybdenum cofact 52.2 44 0.0015 28.0 7.2 30 148-183 51-80 (340)
7 3kdg_A DNA mismatch repair pro 51.5 34 0.0012 27.6 6.2 7 99-105 170-176 (197)
8 2qgq_A Protein TM_1862; alpha- 45.5 21 0.00073 30.0 4.3 53 100-183 11-63 (304)
9 3t7v_A Methylornithine synthas 37.2 24 0.00084 29.9 3.4 46 148-199 92-137 (350)
10 2kn0_A FN14; tweak, TNF recept 35.3 11 0.00037 27.4 0.7 13 112-124 20-32 (66)
11 3fz0_A Nucleoside hydrolase, p 34.2 15 0.00051 33.1 1.6 17 162-181 154-170 (360)
12 2c40_A Inosine-uridine preferr 33.0 13 0.00044 32.0 1.0 16 165-181 141-156 (312)
13 3s93_A Tudor domain-containing 32.3 1.1E+02 0.0037 23.1 5.9 57 12-70 1-63 (102)
14 2a5h_A L-lysine 2,3-aminomutas 30.0 71 0.0024 28.5 5.3 43 149-198 147-189 (416)
15 2k02_A Ferrous iron transport 29.0 1.3E+02 0.0045 22.0 5.8 65 27-120 4-68 (87)
16 1q8f_A Pyrimidine nucleoside h 28.3 17 0.00059 31.4 1.0 17 164-181 139-155 (313)
17 3bk7_A ABC transporter ATP-bin 28.2 14 0.00046 35.1 0.3 12 94-105 21-36 (607)
18 1yoe_A Hypothetical protein YB 27.2 19 0.00064 31.4 1.0 16 165-181 151-166 (322)
19 2y8v_A CHIC, class III chitina 27.1 50 0.0017 27.9 3.6 47 149-201 71-121 (290)
20 2mas_A Inosine-uridine nucleos 26.9 16 0.00056 31.5 0.6 14 166-180 142-155 (314)
21 1dd4_C 50S ribosomal protein L 26.6 75 0.0026 20.6 3.6 30 28-57 4-33 (40)
22 3ncv_A DNA mismatch repair pro 26.0 1.6E+02 0.0055 24.4 6.4 7 99-105 193-199 (220)
23 3t8i_A Purine nucleosidase, (I 24.4 24 0.00082 30.9 1.1 17 164-181 136-152 (306)
24 2yx0_A Radical SAM enzyme; pre 23.4 2.8E+02 0.0096 23.2 7.6 18 96-119 72-91 (342)
25 1xn7_A Hypothetical protein YH 22.4 2.1E+02 0.0071 20.2 5.7 26 27-56 4-29 (78)
26 3zq4_A Ribonuclease J 1, RNAse 22.4 97 0.0033 28.8 4.9 52 15-85 496-547 (555)
27 3epw_A IAG-nucleoside hydrolas 22.3 28 0.00095 30.7 1.1 15 166-181 166-180 (338)
28 1kfw_A Chitinase B; TIM barrel 21.6 37 0.0013 30.7 1.8 50 148-201 100-154 (435)
No 1
>1olt_A Oxygen-independent coproporphyrinogen III oxidase; heme biosynthesis, decarboxylase, radical SAM enzyme, 4Fe- 4 cluster; HET: SAM; 2.07A {Escherichia coli} SCOP: c.1.28.2
Probab=81.21 E-value=1.3 Score=39.87 Aligned_cols=46 Identities=7% Similarity=-0.077 Sum_probs=28.8
Q ss_pred hHHHHHHHHHhcCCCCCccccceeecCCCccCCCCCCCcHHHHHHHHHHh
Q psy3055 151 QTRHRVEQLQQLGHSVDKEWEHVITTGNLAMNWMAPTCPSLWFQINLLSR 200 (219)
Q Consensus 151 Q~~~Rl~qL~~~GH~vDKv~E~lIvmGGTf~~~~~p~~Yq~~Fi~~~~~a 200 (219)
.+..-++.+.+.+.. -++ ..+.+-|||.+.+ |.++-..++..+.+.
T Consensus 88 ~l~~Ei~~~~~~~~~-~~i-~~i~fgGGtpt~l--~~~~l~~ll~~i~~~ 133 (457)
T 1olt_A 88 ALEQEIVHRAPLFAG-RHV-SQLHWGGGTPTYL--NKAQISRLMKLLREN 133 (457)
T ss_dssp HHHHHHHHHGGGGTT-CCE-EEEEEEESCGGGS--CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCC-Cce-EEEEEeCCCcccC--CHHHHHHHHHHHHHh
Confidence 344445555544433 245 4488889999988 777766677666654
No 2
>3iix_A Biotin synthetase, putative; adoMet radical, SAM radical, adoMet cleavage, Fe4S4 cluster, HYDE, hydrogenase, maturation, beta barrel; HET: OTY CSO 5AD CPS; 1.25A {Thermotoga maritima} PDB: 3ciw_A* 3iiz_A* 3cix_A*
Probab=77.95 E-value=6.6 Score=32.93 Aligned_cols=74 Identities=14% Similarity=0.132 Sum_probs=45.5
Q ss_pred EEeecCCCCCccccCCCceeeCCCCCCCCCCccccccCCCchhhHhHHHhcCCchHhHHHHHHHHHhcCCCCCcccccee
Q psy3055 95 AVMCKPHRCPHINMTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRARYNPYIQTRHRVEQLQQLGHSVDKEWEHVI 174 (219)
Q Consensus 95 AVMt~P~~CPHi~~tgg~C~yCPggp~~~F~~spqSYtg~EPa~~RA~r~~yDPy~Q~~~Rl~qL~~~GH~vDKv~E~lI 174 (219)
+.+----.|+ ..|.||...... .....|. =+..++...++++.+.|.. + +.
T Consensus 55 ~~i~~t~~C~------~~C~fC~~~~~~---~~~~~~~--------------ls~eei~~~i~~~~~~g~~-----~-i~ 105 (348)
T 3iix_A 55 AIIEFSNVCR------KNCLYCGLRRDN---KNLKRYR--------------MTPEEIVERARLAVQFGAK-----T-IV 105 (348)
T ss_dssp EEEEEECCCS------CCCTTCTTCTTC---CSSCCCB--------------CCHHHHHHHHHHHHHTTCS-----E-EE
T ss_pred EEeEecCCcC------CcCccCCCCCCC---CCcCcee--------------CCHHHHHHHHHHHHHCCCC-----E-EE
Confidence 3333346899 799999864322 1111121 1457888888999888832 3 77
Q ss_pred ecCCCccCCCCCCCcHHHHHHHHHH
Q psy3055 175 TTGNLAMNWMAPTCPSLWFQINLLS 199 (219)
Q Consensus 175 vmGGTf~~~~~p~~Yq~~Fi~~~~~ 199 (219)
+.||..+.+ +.++-..+++.+.+
T Consensus 106 ~~gGe~p~~--~~~~~~~li~~i~~ 128 (348)
T 3iix_A 106 LQSGEDPYX--MPDVISDIVKEIKK 128 (348)
T ss_dssp EEESCCGGG--TTHHHHHHHHHHHT
T ss_pred EEeCCCCCc--cHHHHHHHHHHHHh
Confidence 789985555 54555556666554
No 3
>3c8f_A Pyruvate formate-lyase 1-activating enzyme; adoMet radical, SAM radical, activase, glycyl radical, 4Fe- 4S, carbohydrate metabolism, cytoplasm; HET: MT2 PGE; 2.25A {Escherichia coli} PDB: 3cb8_A*
Probab=66.23 E-value=4.7 Score=31.23 Aligned_cols=16 Identities=25% Similarity=0.767 Sum_probs=12.2
Q ss_pred EeecCCCCCccccCCCceeeCCCC
Q psy3055 96 VMCKPHRCPHINMTGNICVYCPGG 119 (219)
Q Consensus 96 VMt~P~~CPHi~~tgg~C~yCPgg 119 (219)
|.|. .|+ ..|.||...
T Consensus 24 i~t~--~Cn------~~C~~C~~~ 39 (245)
T 3c8f_A 24 TFFQ--GCL------MRCLYCHNR 39 (245)
T ss_dssp EEES--CCS------CCCTTCSCG
T ss_pred EEeC--CCC------CCCCCCCCc
Confidence 4454 999 599999864
No 4
>1uuz_A IVY, inhibitor of vertebrate lysozyme; hydrolase/inhibitor, lysozyme/inhibitor complex, IVY, type-C lysozyme inhibitor, hydrolase; 1.8A {Pseudomonas aeruginosa} SCOP: d.233.1.1
Probab=64.85 E-value=5.1 Score=32.45 Aligned_cols=47 Identities=32% Similarity=0.588 Sum_probs=32.5
Q ss_pred CCCCHHHHHhhCChhHHHhhhhhhhhC---C--cccccCcee-------------EEEeecCCCCCc
Q psy3055 57 TSPRLVDIIAAVPAEAKKILLPKLKAK---P--IRTASGIAV-------------VAVMCKPHRCPH 105 (219)
Q Consensus 57 ~~P~~~dIl~a~p~e~~~~L~~~L~~K---P--vRT~SGVav-------------VAVMt~P~~CPH 105 (219)
..|..++++ ..+.+|+....+++.. | ||..||.+. |.-||+||-|..
T Consensus 2 ~~pt~s~Ll--~~p~yr~aw~~mvk~~~~LP~WV~~~~GtssP~~~V~~~G~~Ylvg~~CkpHDC~~ 66 (137)
T 1uuz_A 2 EQPRLFELL--GQPGYKATWHAMFKGESDVPKWVSDASGPSSPSTSLSLEGQPYVLANSCKPHDCGN 66 (137)
T ss_dssp CCCCHHHHT--TSHHHHHHHHHHTSSCCSCCHHHHTTCSCBCCCEEEEETTEEEEEEEEECTTCTTT
T ss_pred CCCCHHHHh--hChHHHHHHHHHHhccCCCcHHHHhCCCCCCCCeeEEECCEEEEEEcccCCCCCcc
Confidence 358899997 6778887776666444 1 455666442 555899999983
No 5
>1r30_A Biotin synthase; SAM radical protein, TIM barrel, FES cluster, transferase; HET: SAM DTB; 3.40A {Escherichia coli} SCOP: c.1.28.1
Probab=58.42 E-value=49 Score=28.36 Aligned_cols=44 Identities=30% Similarity=0.545 Sum_probs=26.1
Q ss_pred cCCCCCccccCCCceeeCCCCCCCCCCccccccCCCchhhHhHHHhcCCchHhHHHHHHHHHhcC
Q psy3055 99 KPHRCPHINMTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRARYNPYIQTRHRVEQLQQLG 163 (219)
Q Consensus 99 ~P~~CPHi~~tgg~C~yCPggp~~~F~~spqSYtg~EPa~~RA~r~~yDPy~Q~~~Rl~qL~~~G 163 (219)
.--.|+ .+|.||...... + ++.+ +..+=+..++...++++.+.|
T Consensus 72 ~t~~C~------~~C~yC~~~~~~------~--~~~~-------~~~~~s~eei~~~~~~~~~~g 115 (369)
T 1r30_A 72 KTGACP------EDCKYCPQSSRY------K--TGLE-------AERLMEVEQVLESARKAKAAG 115 (369)
T ss_dssp ECSCBS------SCCSSCSCBTTS------C--TTCC-------CCCCCCHHHHHHHHHHHHHTT
T ss_pred ECCCCc------ccCccCCCCCcC------C--CCCc-------ccccCCHHHHHHHHHHHHHcC
Confidence 456899 799999854211 0 0100 011224577788888888776
No 6
>1tv8_A MOAA, molybdenum cofactor biosynthesis protein A; TIM barrel, ligand binding protein; HET: SAM; 2.20A {Staphylococcus aureus} SCOP: c.1.28.3 PDB: 1tv7_A* 2fb3_A* 2fb2_A*
Probab=52.18 E-value=44 Score=28.04 Aligned_cols=30 Identities=20% Similarity=0.282 Sum_probs=20.4
Q ss_pred chHhHHHHHHHHHhcCCCCCccccceeecCCCccCC
Q psy3055 148 PYIQTRHRVEQLQQLGHSVDKEWEHVITTGNLAMNW 183 (219)
Q Consensus 148 Py~Q~~~Rl~qL~~~GH~vDKv~E~lIvmGGTf~~~ 183 (219)
+..++..-++++.+.| +.+ +.+.||.-+-.
T Consensus 51 s~e~i~~~i~~~~~~g--~~~----i~~tGGEPll~ 80 (340)
T 1tv8_A 51 TFDEMARIAKVYAELG--VKK----IRITGGEPLMR 80 (340)
T ss_dssp CHHHHHHHHHHHHHTT--CCE----EEEESSCGGGS
T ss_pred CHHHHHHHHHHHHHCC--CCE----EEEeCCCccch
Confidence 4567777778888766 222 66789887666
No 7
>3kdg_A DNA mismatch repair protein MUTL; endonuclease, DNA damage, DNA repair, hydrolase; HET: DNA; 2.00A {Bacillus subtilis} PDB: 3gab_A* 3kdk_A*
Probab=51.50 E-value=34 Score=27.61 Aligned_cols=7 Identities=57% Similarity=1.564 Sum_probs=6.2
Q ss_pred cCCCCCc
Q psy3055 99 KPHRCPH 105 (219)
Q Consensus 99 ~P~~CPH 105 (219)
.|+.|||
T Consensus 170 ~p~~CpH 176 (197)
T 3kdg_A 170 DPFTCPH 176 (197)
T ss_dssp CTTBCTT
T ss_pred CCCcCCC
Confidence 3999999
No 8
>2qgq_A Protein TM_1862; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: CXS; 2.00A {Thermotoga maritima MSB8}
Probab=45.53 E-value=21 Score=30.02 Aligned_cols=53 Identities=21% Similarity=0.373 Sum_probs=27.6
Q ss_pred CCCCCccccCCCceeeCCCCCCCCCCccccccCCCchhhHhHHHhcCCchHhHHHHHHHHHhcCCCCCccccceeecCCC
Q psy3055 100 PHRCPHINMTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRARYNPYIQTRHRVEQLQQLGHSVDKEWEHVITTGNL 179 (219)
Q Consensus 100 P~~CPHi~~tgg~C~yCPggp~~~F~~spqSYtg~EPa~~RA~r~~yDPy~Q~~~Rl~qL~~~GH~vDKv~E~lIvmGGT 179 (219)
--.|| ..|.||--.. . .|. .+.-|..++..-+++|.+.|.. | +++.|+.
T Consensus 11 s~GC~------~~C~fC~~~~---------~-~g~---------~r~r~~e~i~~ei~~l~~~G~~-----e-i~l~g~~ 59 (304)
T 2qgq_A 11 SDGCD------RGCTFCSIPS---------F-KGS---------LRSRSIEDITREVEDLLKEGKK-----E-IILVAQD 59 (304)
T ss_dssp BCCC-----------------------------CC---------CCBCCHHHHHHHHHHHHHTTCC-----E-EEEECTT
T ss_pred CCCCC------CcCccCCccc---------c-CCC---------ceeeCHHHHHHHHHHHHHCCCc-----E-EEEEeEc
Confidence 35799 6999997431 0 011 1334667888889999887742 5 8888888
Q ss_pred ccCC
Q psy3055 180 AMNW 183 (219)
Q Consensus 180 f~~~ 183 (219)
+.+|
T Consensus 60 ~~~y 63 (304)
T 2qgq_A 60 TTSY 63 (304)
T ss_dssp GGGT
T ss_pred cccc
Confidence 7776
No 9
>3t7v_A Methylornithine synthase PYLB; TIM-barrel fold, mutase, [4Fe-4S]-cluster, SAM, lysine, transferase; HET: SAM MD0; 1.50A {Methanosarcina barkeri}
Probab=37.25 E-value=24 Score=29.88 Aligned_cols=46 Identities=9% Similarity=-0.052 Sum_probs=25.5
Q ss_pred chHhHHHHHHHHHhcCCCCCccccceeecCCCccCCCCCCCcHHHHHHHHHH
Q psy3055 148 PYIQTRHRVEQLQQLGHSVDKEWEHVITTGNLAMNWMAPTCPSLWFQINLLS 199 (219)
Q Consensus 148 Py~Q~~~Rl~qL~~~GH~vDKv~E~lIvmGGTf~~~~~p~~Yq~~Fi~~~~~ 199 (219)
+..++...++++.+.|. . + +.+.||....+..+.++-..+++.+-+
T Consensus 92 s~eei~~~~~~~~~~G~--~---~-i~l~gGe~p~~~~~~~~~~~l~~~ik~ 137 (350)
T 3t7v_A 92 TMEEIKETCKTLKGAGF--H---M-VDLTMGEDPYYYEDPNRFVELVQIVKE 137 (350)
T ss_dssp CHHHHHHHHHHHTTSCC--S---E-EEEEECCCHHHHHSTHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCC--C---E-EEEeeCCCCccccCHHHHHHHHHHHHh
Confidence 55788888888888773 2 3 555777644320012333445555543
No 10
>2kn0_A FN14; tweak, TNF receptor, CRD, mutagenesis, apoptosis; NMR {Xenopus laevis}
Probab=35.34 E-value=11 Score=27.44 Aligned_cols=13 Identities=38% Similarity=0.828 Sum_probs=11.0
Q ss_pred ceeeCCCCCCCCC
Q psy3055 112 ICVYCPGGPDSDF 124 (219)
Q Consensus 112 ~C~yCPggp~~~F 124 (219)
.|.-||+.|+|||
T Consensus 20 ~Cs~C~~~p~Sdf 32 (66)
T 2kn0_A 20 ECSVCKNSEKSDF 32 (66)
T ss_dssp ESTTCSSCCCCTT
T ss_pred ccCcCCCCCCccc
Confidence 4677899999998
No 11
>3fz0_A Nucleoside hydrolase, putative; NH fold, open alpha/beta structure, glycosidase; HET: BTB; 2.50A {Trypanosoma brucei}
Probab=34.21 E-value=15 Score=33.11 Aligned_cols=17 Identities=12% Similarity=0.196 Sum_probs=13.3
Q ss_pred cCCCCCccccceeecCCCcc
Q psy3055 162 LGHSVDKEWEHVITTGNLAM 181 (219)
Q Consensus 162 ~GH~vDKv~E~lIvmGGTf~ 181 (219)
+|+. || ++|+||||.|.
T Consensus 154 ig~~--kv-~~iviMGG~~~ 170 (360)
T 3fz0_A 154 LGTD--TI-PGIVIMNGTSE 170 (360)
T ss_dssp SSCS--SS-CSEEEECCCSS
T ss_pred hccc--cC-cEEEEECCCcc
Confidence 4666 88 55999999985
No 12
>2c40_A Inosine-uridine preferring nucleoside hydrolase F protein; spine; 2.2A {Bacillus anthracis}
Probab=33.05 E-value=13 Score=31.95 Aligned_cols=16 Identities=13% Similarity=0.071 Sum_probs=13.0
Q ss_pred CCCccccceeecCCCcc
Q psy3055 165 SVDKEWEHVITTGNLAM 181 (219)
Q Consensus 165 ~vDKv~E~lIvmGGTf~ 181 (219)
-.+|| ++|+||||.|.
T Consensus 141 i~~~i-~~iviMGGa~~ 156 (312)
T 2c40_A 141 IENKI-KRLVWMGGTFR 156 (312)
T ss_dssp GGGGE-EEEEEECCCCS
T ss_pred HHhhc-CEEEEeCCccc
Confidence 46788 66999999985
No 13
>3s93_A Tudor domain-containing protein 5; structural genomics consortium, SGC, transcription; 2.28A {Homo sapiens}
Probab=32.31 E-value=1.1e+02 Score=23.09 Aligned_cols=57 Identities=16% Similarity=0.253 Sum_probs=42.1
Q ss_pred CCChhhHHHHHHHHHHHHHHHHhhccCcccHHHHHHHHHHHcC--CC----CCCCHHHHHhhCCh
Q psy3055 12 KLSIDERTVLTIGEIIQELLVAHKECKDVNLNQMKTRISSKYG--LD----TSPRLVDIIAAVPA 70 (219)
Q Consensus 12 ~~~~~e~~~~~~~eii~~ii~~~~~~~~~~L~~~k~~i~rky~--L~----~~P~~~dIl~a~p~ 70 (219)
++++.|..+..+..+++.||-. ....+.+.++.+....-.| || +.....|.|..+|+
T Consensus 1 ~~~~~~~~l~~vkk~irslLiS--~K~gvtl~~L~~dYr~~~G~~iP~r~lGy~sl~~fL~sipd 63 (102)
T 3s93_A 1 GMSEQERIQECLRKEIRSLLIS--TKDGLSPQELEKEYLLMVGNHLPLRILGYRSTMELVLDMPD 63 (102)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHS--SSSCBCHHHHHHHHHHHHSSCCCTGGGTCSSHHHHHHTCTT
T ss_pred CCccHHHHHHHHHHHHHHhhee--CCCCcCHHHHHHHHHHHcCCcCCchhcCcCCHHHHHHcCCC
Confidence 3567788899999999999976 4457899999999988888 22 34556666665553
No 14
>2a5h_A L-lysine 2,3-aminomutase; radical SAM, four-iron-four-sulfur cluster, 4Fe4S, FS4, SAM, adenosylmethionine, alpha-beta channel; HET: SAM LYS PLP; 2.10A {Clostridium subterminale}
Probab=30.04 E-value=71 Score=28.52 Aligned_cols=43 Identities=9% Similarity=0.096 Sum_probs=25.9
Q ss_pred hHhHHHHHHHHHhcCCCCCccccceeecCCCccCCCCCCCcHHHHHHHHH
Q psy3055 149 YIQTRHRVEQLQQLGHSVDKEWEHVITTGNLAMNWMAPTCPSLWFQINLL 198 (219)
Q Consensus 149 y~Q~~~Rl~qL~~~GH~vDKv~E~lIvmGGTf~~~~~p~~Yq~~Fi~~~~ 198 (219)
..++..-++.+.+. -.+.+ +++.||--+-+ |.+.-.++++.+-
T Consensus 147 ~eei~~~i~~i~~~----~gi~~-V~ltGGEPll~--~d~~L~~il~~l~ 189 (416)
T 2a5h_A 147 MERIDKAIDYIRNT----PQVRD-VLLSGGDALLV--SDETLEYIIAKLR 189 (416)
T ss_dssp HHHHHHHHHHHHTC----TTCCE-EEEEESCTTSS--CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc----CCCcE-EEEECCCCCCC--CHHHHHHHHHHHH
Confidence 35555666677652 12425 89999987666 5444555666554
No 15
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=29.04 E-value=1.3e+02 Score=21.97 Aligned_cols=65 Identities=17% Similarity=0.215 Sum_probs=35.4
Q ss_pred HHHHHHHhhccCcccHHHHHHHHHHHcCCCCCCCHHHHHhhCChhHHHhhhhhhhhCCcccccCceeEEEeecCCCCCcc
Q psy3055 27 IQELLVAHKECKDVNLNQMKTRISSKYGLDTSPRLVDIIAAVPAEAKKILLPKLKAKPIRTASGIAVVAVMCKPHRCPHI 106 (219)
Q Consensus 27 i~~ii~~~~~~~~~~L~~~k~~i~rky~L~~~P~~~dIl~a~p~e~~~~L~~~L~~KPvRT~SGVavVAVMt~P~~CPHi 106 (219)
+.+|++.+.....+.+++ +++.++++. .-| |..|..+-++.-+ .-+...+-.|+-
T Consensus 4 L~~Il~~L~~~g~vsv~e----LA~~l~VS~----~TI--------RrDL~~Le~~G~l--------~R~~~~~~~C~s- 58 (87)
T 2k02_A 4 LMEVRDMLALQGRMEAKQ----LSARLQTPQ----PLI--------DAMLERMEAMGKV--------VRISETSEGCLS- 58 (87)
T ss_dssp THHHHHHHHHSCSEEHHH----HHHHTTCCH----HHH--------HHHHHHHHTTCCS--------EEEEEECCSSCS-
T ss_pred HHHHHHHHHHcCCCcHHH----HHHHHCcCH----HHH--------HHHHHHHHHCCCE--------EEEecCCCCCCC-
Confidence 345666666667777764 577777651 111 2233222222221 122234668985
Q ss_pred ccCCCceeeCCCCC
Q psy3055 107 NMTGNICVYCPGGP 120 (219)
Q Consensus 107 ~~tgg~C~yCPggp 120 (219)
|.|--||.+.
T Consensus 59 ----gsC~sC~~~~ 68 (87)
T 2k02_A 59 ----GSCKSCPEGK 68 (87)
T ss_dssp ----SSSSSCSSCC
T ss_pred ----CCCCCCCCcc
Confidence 6799999985
No 16
>1q8f_A Pyrimidine nucleoside hydrolase; open alpha-beta structure, NH-fold; 1.70A {Escherichia coli} SCOP: c.70.1.1 PDB: 3b9x_A* 3mkn_A* 3mkm_A*
Probab=28.30 E-value=17 Score=31.44 Aligned_cols=17 Identities=12% Similarity=0.085 Sum_probs=13.4
Q ss_pred CCCCccccceeecCCCcc
Q psy3055 164 HSVDKEWEHVITTGNLAM 181 (219)
Q Consensus 164 H~vDKv~E~lIvmGGTf~ 181 (219)
.-.+|| ++|+||||.|.
T Consensus 139 ~i~~~i-~~iviMGG~~~ 155 (313)
T 1q8f_A 139 AILPKI-REIVLMGGAYG 155 (313)
T ss_dssp GGGGGE-EEEEEECCCSS
T ss_pred HHHHhC-CEEEEECCCCC
Confidence 346788 55999999985
No 17
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=28.21 E-value=14 Score=35.13 Aligned_cols=12 Identities=50% Similarity=1.395 Sum_probs=9.7
Q ss_pred EEEe----ecCCCCCc
Q psy3055 94 VAVM----CKPHRCPH 105 (219)
Q Consensus 94 VAVM----t~P~~CPH 105 (219)
|||. |+|-+|-|
T Consensus 21 ~~~~~~~~c~p~~c~~ 36 (607)
T 3bk7_A 21 IAVIDYDKCNPDKCGH 36 (607)
T ss_dssp EEECCGGGCCTTTSSS
T ss_pred EEEeeccccCCCCCCh
Confidence 6676 99999976
No 18
>1yoe_A Hypothetical protein YBEK; pyrimidine nucleoside hydrolase, bacterial nucleosidase, RIB enzyme-product complex, hydrolase; HET: RIB; 1.78A {Escherichia coli} PDB: 3g5i_A*
Probab=27.19 E-value=19 Score=31.43 Aligned_cols=16 Identities=13% Similarity=0.088 Sum_probs=12.8
Q ss_pred CCCccccceeecCCCcc
Q psy3055 165 SVDKEWEHVITTGNLAM 181 (219)
Q Consensus 165 ~vDKv~E~lIvmGGTf~ 181 (219)
-.+|| +.|+||||.|.
T Consensus 151 i~~~i-~~iviMGGa~~ 166 (322)
T 1yoe_A 151 LHSKI-ARIVIMGGAMG 166 (322)
T ss_dssp GGGGE-EEEEEECCCSS
T ss_pred HHhhC-CEEEEeCCCCC
Confidence 46788 55999999875
No 19
>2y8v_A CHIC, class III chitinase, putative; afchic, hydrolase; 1.99A {Aspergillus fumigatus}
Probab=27.08 E-value=50 Score=27.87 Aligned_cols=47 Identities=17% Similarity=0.006 Sum_probs=34.2
Q ss_pred hHhHHHHHHHHHhcCCCCCccccceeecCC----CccCCCCCCCcHHHHHHHHHHhh
Q psy3055 149 YIQTRHRVEQLQQLGHSVDKEWEHVITTGN----LAMNWMAPTCPSLWFQINLLSRT 201 (219)
Q Consensus 149 y~Q~~~Rl~qL~~~GH~vDKv~E~lIvmGG----Tf~~~~~p~~Yq~~Fi~~~~~al 201 (219)
+.+....+..|++.| =|| +|-+|| +|+.+.....-|+.|++.+.+.+
T Consensus 71 ~~~~~~~i~~~k~~g---~kv---llSiGG~~~~~fs~~~~~~~~r~~f~~s~~~~~ 121 (290)
T 2y8v_A 71 YNPLWAEVPVLKRSG---VKV---MGMLGGAAQGSYRCLDGDQEKFERYYQPLLAMV 121 (290)
T ss_dssp GHHHHHHHHHHHHTT---CEE---EEEEECSSTTTTGGGSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCC---CEE---EEEECCCCCCCchhccCCHHHHHHHHHHHHHHH
Confidence 457788999999988 566 777776 35444334567888999988776
No 20
>2mas_A Inosine-uridine nucleoside N-ribohydrolase; purine nucleoside hydrolase, IU-NH, purine nucleosidase; HET: PIR; 2.30A {Crithidia fasciculata} SCOP: c.70.1.1 PDB: 1mas_A* 1ezr_A
Probab=26.91 E-value=16 Score=31.53 Aligned_cols=14 Identities=29% Similarity=0.370 Sum_probs=11.6
Q ss_pred CCccccceeecCCCc
Q psy3055 166 VDKEWEHVITTGNLA 180 (219)
Q Consensus 166 vDKv~E~lIvmGGTf 180 (219)
.+|| ++|+||||.|
T Consensus 142 ~~~i-~~iviMGG~~ 155 (314)
T 2mas_A 142 VDRV-KEVVLMGGGY 155 (314)
T ss_dssp HHHS-CEEEEECCCS
T ss_pred HhhC-CEEEEeCCcc
Confidence 5678 5599999998
No 21
>1dd4_C 50S ribosomal protein L7/L12; dimer formation, flexibility, hinge region, four-helix- bundle, five-helix- bundle, alpha-beta structure; HET: TBR; 2.40A {Thermotoga maritima} SCOP: a.108.1.1
Probab=26.58 E-value=75 Score=20.61 Aligned_cols=30 Identities=17% Similarity=0.407 Sum_probs=25.1
Q ss_pred HHHHHHhhccCcccHHHHHHHHHHHcCCCC
Q psy3055 28 QELLVAHKECKDVNLNQMKTRISSKYGLDT 57 (219)
Q Consensus 28 ~~ii~~~~~~~~~~L~~~k~~i~rky~L~~ 57 (219)
.+|++.+..-+-.++..+-+.+-.+||++.
T Consensus 4 ~~iie~i~~lTvlE~~eLvk~leekfGVsa 33 (40)
T 1dd4_C 4 DEIIEAIEKLTVSELAELVKKLEDKFGVTA 33 (40)
T ss_dssp HHHHHHHTTSCHHHHHHHHHHHHHHTCCCS
T ss_pred HHHHHHHHhCcHHHHHHHHHHHHHHHCCCc
Confidence 567777777778899999999999999874
No 22
>3ncv_A DNA mismatch repair protein MUTL; endonuclease, dimer, hydrolase; HET: DNA; 2.40A {Neisseria gonorrhoeae}
Probab=25.98 E-value=1.6e+02 Score=24.40 Aligned_cols=7 Identities=29% Similarity=1.066 Sum_probs=6.2
Q ss_pred cCCCCCc
Q psy3055 99 KPHRCPH 105 (219)
Q Consensus 99 ~P~~CPH 105 (219)
.|+.|||
T Consensus 193 ~P~~CPH 199 (220)
T 3ncv_A 193 RSNQCNH 199 (220)
T ss_dssp TTTBCTT
T ss_pred CCCcCCC
Confidence 4999999
No 23
>3t8i_A Purine nucleosidase, (IUNH-2); purine nucleoside hydrolase, thermostable protein, open (ALP structure, rossmann fold, NH-fold; 1.80A {Sulfolobus solfataricus}
Probab=24.38 E-value=24 Score=30.90 Aligned_cols=17 Identities=12% Similarity=0.149 Sum_probs=13.2
Q ss_pred CCCCccccceeecCCCcc
Q psy3055 164 HSVDKEWEHVITTGNLAM 181 (219)
Q Consensus 164 H~vDKv~E~lIvmGGTf~ 181 (219)
.-.+|| +.|+||||.|.
T Consensus 136 ~i~~~i-~~iviMGG~~~ 152 (306)
T 3t8i_A 136 SVVKRV-KKIWIMGGAFS 152 (306)
T ss_dssp GGGGTC-CEEEEECCCSS
T ss_pred hHHhhc-CEEEEecCCCC
Confidence 346788 55999999974
No 24
>2yx0_A Radical SAM enzyme; predicted tRNA modification enzyme, metal binding protein, structural genomics, NPPSFA; 2.21A {Pyrococcus horikoshii}
Probab=23.40 E-value=2.8e+02 Score=23.19 Aligned_cols=18 Identities=22% Similarity=0.696 Sum_probs=13.6
Q ss_pred EeecCC--CCCccccCCCceeeCCCC
Q psy3055 96 VMCKPH--RCPHINMTGNICVYCPGG 119 (219)
Q Consensus 96 VMt~P~--~CPHi~~tgg~C~yCPgg 119 (219)
|...|. .|+ ..|.||..+
T Consensus 72 l~i~~~~~gCn------l~C~fC~~~ 91 (342)
T 2yx0_A 72 LQMTPVLAWCT------HNCIFCWRP 91 (342)
T ss_dssp EEEESCSSCCS------BCCTTCCCS
T ss_pred EEEEeChhhhh------CcCcccCCC
Confidence 444576 799 699999875
No 25
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=22.42 E-value=2.1e+02 Score=20.17 Aligned_cols=26 Identities=12% Similarity=-0.023 Sum_probs=16.8
Q ss_pred HHHHHHHhhccCcccHHHHHHHHHHHcCCC
Q psy3055 27 IQELLVAHKECKDVNLNQMKTRISSKYGLD 56 (219)
Q Consensus 27 i~~ii~~~~~~~~~~L~~~k~~i~rky~L~ 56 (219)
+++|++.+.....+.+++ ++++++++
T Consensus 4 L~~Il~~L~~~g~vsv~e----La~~l~VS 29 (78)
T 1xn7_A 4 LIQVRDLLALRGRMEAAQ----ISQTLNTP 29 (78)
T ss_dssp HHHHHHHHHHSCSBCHHH----HHHHTTCC
T ss_pred HHHHHHHHHHcCCCcHHH----HHHHHCcC
Confidence 455666666667777764 57777754
No 26
>3zq4_A Ribonuclease J 1, RNAse J1; hydrolase, RNA maturation; 3.00A {Bacillus subtilis}
Probab=22.38 E-value=97 Score=28.78 Aligned_cols=52 Identities=21% Similarity=0.281 Sum_probs=38.0
Q ss_pred hhhHHHHHHHHHHHHHHHHhhccCcccHHHHHHHHHHHcCCCCCCCHHHHHhhCChhHHHhhhhhhhhCCc
Q psy3055 15 IDERTVLTIGEIIQELLVAHKECKDVNLNQMKTRISSKYGLDTSPRLVDIIAAVPAEAKKILLPKLKAKPI 85 (219)
Q Consensus 15 ~~e~~~~~~~eii~~ii~~~~~~~~~~L~~~k~~i~rky~L~~~P~~~dIl~a~p~e~~~~L~~~L~~KPv 85 (219)
+++.+++.+.+++.+.++........|...+|..+.+..+ +.+....++||+
T Consensus 496 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-------------------~~~~~~~~~~P~ 547 (555)
T 3zq4_A 496 ESGDLINDAQELISNHLQKVMERKTTQWSEIKNEITDTLA-------------------PFLYEKTKRRPM 547 (555)
T ss_dssp HHTTHHHHHHHHHHHHHHHHHSCCCCCHHHHHHHHHHHHH-------------------HHHHHHHSCCCE
T ss_pred CcHHHHHHHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHH-------------------HHHHHHHCCCcE
Confidence 4466788888888888887655566788888777766544 667778888884
No 27
>3epw_A IAG-nucleoside hydrolase; rossmann fold, active site loops, aromatic stacking; HET: JMQ; 1.30A {Trypanosoma vivax} SCOP: c.70.1.1 PDB: 3epx_A* 1hoz_A 1hp0_A* 2ff1_A* 2ff2_A* 1kic_A* 1kie_A* 1r4f_A* 3b9g_A*
Probab=22.33 E-value=28 Score=30.67 Aligned_cols=15 Identities=20% Similarity=0.237 Sum_probs=12.0
Q ss_pred CCccccceeecCCCcc
Q psy3055 166 VDKEWEHVITTGNLAM 181 (219)
Q Consensus 166 vDKv~E~lIvmGGTf~ 181 (219)
.+|| +.|+||||.|.
T Consensus 166 ~~~i-~~iviMGG~~~ 180 (338)
T 3epw_A 166 TSKV-EECVIMGGAVD 180 (338)
T ss_dssp HTTE-EEEEEECCCSS
T ss_pred HHhC-CEEEEecCCCC
Confidence 4677 55999999995
No 28
>1kfw_A Chitinase B; TIM barrel, hydrolase; 1.74A {Arthrobacter SP} SCOP: c.1.8.5 d.26.3.1
Probab=21.60 E-value=37 Score=30.70 Aligned_cols=50 Identities=14% Similarity=0.086 Sum_probs=32.1
Q ss_pred chHhHHHHHHHHHhcCCCCCccccceeecCC-C----ccCCCCCCCcHHHHHHHHHHhh
Q psy3055 148 PYIQTRHRVEQLQQLGHSVDKEWEHVITTGN-L----AMNWMAPTCPSLWFQINLLSRT 201 (219)
Q Consensus 148 Py~Q~~~Rl~qL~~~GH~vDKv~E~lIvmGG-T----f~~~~~p~~Yq~~Fi~~~~~al 201 (219)
|+.....++..|++. |+-=|| +|-+|| | |+.+.+...-|+.||.++.+-+
T Consensus 100 ~~~g~~~~l~~lK~~-~p~lKv---llSiGGw~~s~~fs~~~~~~~~R~~Fi~siv~~l 154 (435)
T 1kfw_A 100 PLAGSFNQLKQLKAK-NPKLKV---MISLGGWTWSKNFSKAAATEASRQKLVSSCIDLY 154 (435)
T ss_dssp SCCHHHHHHHHHHTT-CTTCEE---EEEEECSSSCTTHHHHTSSHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHh-CCCCEE---EEEEcCCCCcchhhHHhCCHHHHHHHHHHHHHHH
Confidence 334445566777665 333477 777777 3 3233345678899999998877
Done!