Query psy3055
Match_columns 219
No_of_seqs 126 out of 232
Neff 3.1
Searched_HMMs 13730
Date Sat Aug 17 00:34:12 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3055.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/3055hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1olta_ c.1.28.2 (A:) Oxygen-i 80.4 0.71 5.2E-05 39.7 4.3 35 167-204 100-134 (441)
2 d1uuza_ d.233.1.1 (A:) Inhibit 78.8 1 7.5E-05 34.5 4.3 47 57-105 2-66 (130)
3 d1r30a_ c.1.28.1 (A:) Biotin s 72.7 4.7 0.00034 31.3 6.9 30 148-183 74-103 (312)
4 d1edqa2 c.1.8.5 (A:133-443,A:5 50.0 4.4 0.00032 33.8 2.8 51 147-201 115-169 (358)
5 d1svva_ c.67.1.1 (A:) Low-spec 47.4 9 0.00066 27.1 3.8 43 133-180 11-63 (340)
6 d1fcda2 c.3.1.5 (A:115-255) Fl 46.3 4.2 0.0003 29.6 1.8 28 74-104 21-48 (141)
7 d2pi6a1 c.1.8.5 (A:1-239,A:308 44.6 3.1 0.00022 32.8 0.9 49 150-202 53-107 (292)
8 d1goia2 c.1.8.5 (A:3-291,A:380 44.2 3.2 0.00023 33.7 1.0 45 152-201 72-129 (356)
9 d1wb0a1 c.1.8.5 (A:22-266,A:33 41.4 2.8 0.0002 33.0 0.1 48 151-202 54-107 (297)
10 d2j7ja2 g.37.1.1 (A:29-57) Tra 38.0 3.2 0.00023 24.5 -0.0 7 99-105 2-8 (29)
11 d2glia5 g.37.1.1 (A:229-257) F 37.0 6.3 0.00046 23.2 1.3 15 125-141 8-22 (29)
12 d1vf8a1 c.1.8.5 (A:1-245,A:316 36.0 4.5 0.00033 31.9 0.6 50 149-202 52-107 (302)
13 d1zavu1 a.108.1.1 (U:1-30) Rib 35.3 18 0.0013 21.2 3.1 28 27-54 3-30 (30)
14 d1kica_ c.70.1.1 (A:) Inosine- 31.8 7 0.00051 31.8 1.1 15 167-182 156-170 (327)
15 d2glia3 g.37.1.1 (A:168-197) F 30.7 8.1 0.00059 22.2 1.0 7 99-105 1-7 (30)
16 d1itxa1 c.1.8.5 (A:33-337,A:41 30.7 6.6 0.00048 32.0 0.8 51 147-201 104-159 (347)
17 d1sp2a_ g.37.1.1 (A:) Transcri 27.9 9.4 0.00068 21.9 0.9 7 99-105 1-7 (31)
18 d2jzaa1 b.33.1.3 (A:1-122) NAD 26.0 13 0.00094 26.0 1.6 20 101-120 44-74 (122)
19 d1kfwa1 c.1.8.5 (A:10-327,A:38 25.7 13 0.00096 30.9 1.9 52 147-202 99-155 (374)
20 d2masa_ c.70.1.1 (A:) Inosine- 25.7 9.6 0.0007 30.4 0.9 15 166-181 142-156 (313)
21 d1h3oa_ a.22.1.3 (A:) TAF(II)- 21.9 31 0.0023 22.2 2.7 38 42-79 8-46 (50)
22 d1tv8a_ c.1.28.3 (A:) Molybden 21.8 62 0.0045 24.1 5.0 15 149-163 50-64 (327)
23 d1ubdc3 g.37.1.1 (C:351-380) Y 20.9 11 0.00083 21.4 0.3 7 99-105 1-7 (30)
24 d1ubdc4 g.37.1.1 (C:381-408) Y 20.9 16 0.0012 20.7 1.0 7 99-105 1-7 (28)
25 d1whua_ a.4.9.1 (A:) Polynucle 20.1 1.3E+02 0.0092 20.6 7.5 79 8-87 7-94 (104)
No 1
>d1olta_ c.1.28.2 (A:) Oxygen-independent coproporphyrinogen III oxidase HemN {Escherichia coli [TaxId: 562]}
Probab=80.39 E-value=0.71 Score=39.68 Aligned_cols=35 Identities=9% Similarity=-0.043 Sum_probs=24.2
Q ss_pred CccccceeecCCCccCCCCCCCcHHHHHHHHHHhhccc
Q psy3055 167 DKEWEHVITTGNLAMNWMAPTCPSLWFQINLLSRTQWK 204 (219)
Q Consensus 167 DKv~E~lIvmGGTf~~~~~p~~Yq~~Fi~~~~~al~~~ 204 (219)
-+| +++-+-|||.+.+ +.+--+.++..+.+...|.
T Consensus 100 ~~v-~~i~~GGGTPt~L--~~~~l~~ll~~l~~~~~~~ 134 (441)
T d1olta_ 100 RHV-SQLHWGGGTPTYL--NKAQISRLMKLLRENFQFN 134 (441)
T ss_dssp CCE-EEEEEEESCGGGS--CHHHHHHHHHHHHHHSCEE
T ss_pred Ccc-ceeEecCCCcCCC--CHHHHHHHHHHHhhhcccc
Confidence 456 6688999999999 7665555666655555553
No 2
>d1uuza_ d.233.1.1 (A:) Inhibitor of vertebrate lysozyme, Ivy {Pseudomonas aeruginosa [TaxId: 287]}
Probab=78.78 E-value=1 Score=34.55 Aligned_cols=47 Identities=32% Similarity=0.596 Sum_probs=33.5
Q ss_pred CCCCHHHHHhhCChhHHHhhhhhhhhCC-----cccccCce-------------eEEEeecCCCCCc
Q psy3055 57 TSPRLVDIIAAVPAEAKKILLPKLKAKP-----IRTASGIA-------------VVAVMCKPHRCPH 105 (219)
Q Consensus 57 ~~P~~~dIl~a~p~e~~~~L~~~L~~KP-----vRT~SGVa-------------vVAVMt~P~~CPH 105 (219)
..|+.+|+|. .+++|+....+++..- ||+.||++ .|.=|||||-|..
T Consensus 2 ~~pt~~eL~~--~~~yr~awq~mvkg~~~LP~WV~~g~GtssP~~~v~~~G~~Y~Vg~~CKpHDC~~ 66 (130)
T d1uuza_ 2 EQPRLFELLG--QPGYKATWHAMFKGESDVPKWVSDASGPSSPSTSLSLEGQPYVLANSCKPHDCGN 66 (130)
T ss_dssp CCCCHHHHTT--SHHHHHHHHHHTSSCCSCCHHHHTTCSCBCCCEEEEETTEEEEEEEEECTTCTTT
T ss_pred CCCcHHHHhh--ChHHHHHHHHHHhccccCcHHHHhCCCCCCCceeeeeCCceEEEeccccCcCCCc
Confidence 4689999986 5888887766664322 56666654 2455899999995
No 3
>d1r30a_ c.1.28.1 (A:) Biotin synthase {Escherichia coli [TaxId: 562]}
Probab=72.66 E-value=4.7 Score=31.32 Aligned_cols=30 Identities=7% Similarity=-0.018 Sum_probs=23.3
Q ss_pred chHhHHHHHHHHHhcCCCCCccccceeecCCCccCC
Q psy3055 148 PYIQTRHRVEQLQQLGHSVDKEWEHVITTGNLAMNW 183 (219)
Q Consensus 148 Py~Q~~~Rl~qL~~~GH~vDKv~E~lIvmGGTf~~~ 183 (219)
...++...++.+.+.|.. + +.+.||++...
T Consensus 74 ~~e~i~~~~~~~~~~G~~-----~-~~~~~g~~~~~ 103 (312)
T d1r30a_ 74 EVEQVLESARKAKAAGST-----R-FCMGAAWKNPH 103 (312)
T ss_dssp CHHHHHHHHHHHHHTTCS-----E-EEEEECCSSCC
T ss_pred chHHHHHHHHHHHHcCCE-----E-EEEccCCCCCc
Confidence 456788888999999843 5 88889988766
No 4
>d1edqa2 c.1.8.5 (A:133-443,A:517-563) Chitinase A, catalytic domain {Serratia marcescens [TaxId: 615]}
Probab=49.96 E-value=4.4 Score=33.78 Aligned_cols=51 Identities=16% Similarity=0.137 Sum_probs=38.8
Q ss_pred CchHhHHHHHHHHHhcCCCCCccccceeecCC-Cc---cCCCCCCCcHHHHHHHHHHhh
Q psy3055 147 NPYIQTRHRVEQLQQLGHSVDKEWEHVITTGN-LA---MNWMAPTCPSLWFQINLLSRT 201 (219)
Q Consensus 147 DPy~Q~~~Rl~qL~~~GH~vDKv~E~lIvmGG-Tf---~~~~~p~~Yq~~Fi~~~~~al 201 (219)
||+.-...++.+|++..+++ || +|=+|| ++ .+.|+....|+.||.++.+-+
T Consensus 115 ~~~~g~~~~~~~LK~~~p~l-Kv---llSiGGw~~s~~~~~~a~~~~R~~Fi~svv~~l 169 (358)
T d1edqa2 115 DPYKGNFGQLMALKQAHPDL-KI---LPSIGGWTLSDPFFFMGDKVKRDRFVGSVKEFL 169 (358)
T ss_dssp CSSCHHHHHHHHHHHHCTTC-EE---EEEEECSSSCGGGGGTTSHHHHHHHHHHHHHHH
T ss_pred cccccHHHHHHHHHHhCCCC-eE---EEEEECCCCCCCcccccCHHHHHHHHHHHHHHH
Confidence 66777788888899887763 66 777787 33 235678889999999998765
No 5
>d1svva_ c.67.1.1 (A:) Low-specificity threonine aldolase {Leishmania major [TaxId: 5664]}
Probab=47.39 E-value=9 Score=27.06 Aligned_cols=43 Identities=12% Similarity=0.227 Sum_probs=27.8
Q ss_pred CCchhhHhHHHh-------cC--Cch-HhHHHHHHHHHhcCCCCCccccceeecCCCc
Q psy3055 133 GYEPTSMRAIRA-------RY--NPY-IQTRHRVEQLQQLGHSVDKEWEHVITTGNLA 180 (219)
Q Consensus 133 g~EPa~~RA~r~-------~y--DPy-~Q~~~Rl~qL~~~GH~vDKv~E~lIvmGGTf 180 (219)
|--|+++.|++. .| ||. .|.+.+|.+|- |.+.+.| +++-|||=
T Consensus 11 g~~P~v~eAl~~~~~~~~~~y~~~~~~~~lr~~ia~~~--g~~~~~v---~~tsggte 63 (340)
T d1svva_ 11 GMHPKILDLMARDNMTQHAGYGQDSHCAKAARLIGELL--ERPDADV---HFISGGTQ 63 (340)
T ss_dssp CCCHHHHHHHHHHTTCCCCSTTCSHHHHHHHHHHHHHH--TCTTSEE---EEESCHHH
T ss_pred CCCHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHHh--CCCcceE---EEcCCHHH
Confidence 557999998862 23 665 46888888765 5555544 55556663
No 6
>d1fcda2 c.3.1.5 (A:115-255) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}
Probab=46.28 E-value=4.2 Score=29.59 Aligned_cols=28 Identities=36% Similarity=0.628 Sum_probs=20.0
Q ss_pred HhhhhhhhhCCcccccCceeEEEeecCCCCC
Q psy3055 74 KILLPKLKAKPIRTASGIAVVAVMCKPHRCP 104 (219)
Q Consensus 74 ~~L~~~L~~KPvRT~SGVavVAVMt~P~~CP 104 (219)
..|+..|++= +..|.+|+++..-|++||
T Consensus 21 ~~L~~~l~~~---~~Gg~vv~t~p~~P~kCp 48 (141)
T d1fcda2 21 AILRKQLEDM---ADGGTVVIAPPAAPFRCP 48 (141)
T ss_dssp HHHHHHHHHS---CTTCCEEEECCCSSCSST
T ss_pred HHHHHHHHhc---ccCCeEEEecCCCCccCC
Confidence 3455555442 235799999999999999
No 7
>d2pi6a1 c.1.8.5 (A:1-239,A:308-361) Signal processing protein (SPC-40, MGP-40) {Sheep (Ovis aries) [TaxId: 9940]}
Probab=44.61 E-value=3.1 Score=32.77 Aligned_cols=49 Identities=10% Similarity=0.083 Sum_probs=35.3
Q ss_pred HhHHHHHHHHHhcCCCCCccccceeecCC-Cc-----cCCCCCCCcHHHHHHHHHHhhc
Q psy3055 150 IQTRHRVEQLQQLGHSVDKEWEHVITTGN-LA-----MNWMAPTCPSLWFQINLLSRTQ 202 (219)
Q Consensus 150 ~Q~~~Rl~qL~~~GH~vDKv~E~lIvmGG-Tf-----~~~~~p~~Yq~~Fi~~~~~al~ 202 (219)
.+...++.+|++..+.+ || +|=+|| ++ +.+.....-|+.||.++.+-+.
T Consensus 53 ~~~~~~~~~lk~~~~~l-Kv---llSvGG~~~~~~~fs~~~~~~~~r~~fi~si~~~l~ 107 (292)
T d2pi6a1 53 VTLYDTLNTLKNRNPKL-KT---LLSVGGWNFGPERFSKIASKTQSRRTFIKSVPPFLR 107 (292)
T ss_dssp HHHHHHHHHHHHHCTTC-EE---EEEEETTTSCHHHHHHHHTSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCCCc-eE---EEEEeccccCchHHHHHhccHHHHHHHHHHHHHHHH
Confidence 35567788898887666 88 888888 43 3333466788899999887664
No 8
>d1goia2 c.1.8.5 (A:3-291,A:380-446) Chitinase B, catalytic domain {Serratia marcescens [TaxId: 615]}
Probab=44.17 E-value=3.2 Score=33.69 Aligned_cols=45 Identities=13% Similarity=0.177 Sum_probs=32.8
Q ss_pred HHHHHHHHHhcCCCCC-ccccceeecCC------------CccCCCCCCCcHHHHHHHHHHhh
Q psy3055 152 TRHRVEQLQQLGHSVD-KEWEHVITTGN------------LAMNWMAPTCPSLWFQINLLSRT 201 (219)
Q Consensus 152 ~~~Rl~qL~~~GH~vD-Kv~E~lIvmGG------------Tf~~~~~p~~Yq~~Fi~~~~~al 201 (219)
...++..|++ |.++ || +|-+|| .|+.+.+..+.|+.||.++.+-+
T Consensus 72 ~~~~~~~lK~--~~p~lKv---llSiGGW~~s~~~~~~~~~fs~~~~~~~~R~~Fi~siv~~l 129 (356)
T d1goia2 72 VVNRLTALKA--HNPSLRI---MFSIGGWYYSNDLGVSHANYVNAVKTPASRAKFAQSCVRIM 129 (356)
T ss_dssp HHHHHHHGGG--GCTTCEE---EEEEECHHHHSTTSTTHHHHHHHTSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH--HCCCCeE---EEEEcCCcCCCCCcccccchHHHhCCHHHHHHHHHHHHHHH
Confidence 4455666655 4444 88 999999 46666667889999999998755
No 9
>d1wb0a1 c.1.8.5 (A:22-266,A:337-388) Chitotriosidase {Human (Homo sapiens) [TaxId: 9606]}
Probab=41.36 E-value=2.8 Score=33.04 Aligned_cols=48 Identities=10% Similarity=0.129 Sum_probs=34.6
Q ss_pred hHHHHHHHHHhcCCCCCccccceeecCC-C-----ccCCCCCCCcHHHHHHHHHHhhc
Q psy3055 151 QTRHRVEQLQQLGHSVDKEWEHVITTGN-L-----AMNWMAPTCPSLWFQINLLSRTQ 202 (219)
Q Consensus 151 Q~~~Rl~qL~~~GH~vDKv~E~lIvmGG-T-----f~~~~~p~~Yq~~Fi~~~~~al~ 202 (219)
+...++.+|++.++++ || +|=+|| + |+.+.+....|+.||.++.+-+.
T Consensus 54 ~~~~~~~~lk~~~p~l-Kv---llSiGG~~~~~~~fs~~~~~~~~R~~Fi~siv~~l~ 107 (297)
T d1wb0a1 54 TLYQEFNGLKKMNPKL-KT---LLAIGGWNFGTQKFTDMVATANNRQTFVNSAIRFLR 107 (297)
T ss_dssp HHHHHHHHGGGTCTTC-EE---EEEEECTTTCSHHHHHHHTSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCC-eE---EEEEeccccccchHHHHhhhhHHHHHHHHHHHHHHH
Confidence 4556677888876555 88 888888 3 33334577899999999887664
No 10
>d2j7ja2 g.37.1.1 (A:29-57) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}
Probab=38.00 E-value=3.2 Score=24.49 Aligned_cols=7 Identities=57% Similarity=1.369 Sum_probs=6.1
Q ss_pred cCCCCCc
Q psy3055 99 KPHRCPH 105 (219)
Q Consensus 99 ~P~~CPH 105 (219)
-||.|||
T Consensus 2 ~py~c~h 8 (29)
T d2j7ja2 2 LPYECPH 8 (29)
T ss_dssp CCEECCS
T ss_pred CCccCCc
Confidence 4899999
No 11
>d2glia5 g.37.1.1 (A:229-257) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=37.03 E-value=6.3 Score=23.23 Aligned_cols=15 Identities=40% Similarity=0.685 Sum_probs=10.7
Q ss_pred CccccccCCCchhhHhH
Q psy3055 125 EYSTQSYTGYEPTSMRA 141 (219)
Q Consensus 125 ~~spqSYtg~EPa~~RA 141 (219)
.+..+||| -|.++|-
T Consensus 8 ~gC~K~Yt--dPSSLRK 22 (29)
T d2glia5 8 PGCTKRYT--DPSSLRK 22 (29)
T ss_dssp TTTCCEES--SHHHHHH
T ss_pred CCCCcccC--CHHHHHH
Confidence 36788997 5777773
No 12
>d1vf8a1 c.1.8.5 (A:1-245,A:316-372) Chitinase-like lectin ym1, saccharide binding domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=36.00 E-value=4.5 Score=31.91 Aligned_cols=50 Identities=8% Similarity=0.114 Sum_probs=34.8
Q ss_pred hHhHHHHHHHHHhcCCCCCccccceeecCC-Cc-----cCCCCCCCcHHHHHHHHHHhhc
Q psy3055 149 YIQTRHRVEQLQQLGHSVDKEWEHVITTGN-LA-----MNWMAPTCPSLWFQINLLSRTQ 202 (219)
Q Consensus 149 y~Q~~~Rl~qL~~~GH~vDKv~E~lIvmGG-Tf-----~~~~~p~~Yq~~Fi~~~~~al~ 202 (219)
..+...++..|++.+..+ || +|=+|| ++ +.+++..+-|+.||.++.+-++
T Consensus 52 ~~~~~~~~~~lk~~~p~l-Kv---llSiGG~~~~~~~fs~~~~~~~~R~~fi~si~~~l~ 107 (302)
T d1vf8a1 52 DLRDYEALNGLKDKNTEL-KT---LLAIGGWKFGPAPFSAMVSTPQNRQIFIQSVIRFLR 107 (302)
T ss_dssp HHHHHHHHHHGGGTCTTC-EE---EEEEECTTTCSHHHHHHHTSHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhCCCc-EE---EEEEecCCCCCcchHHHhcchHHHHHHHHHHHHHHH
Confidence 334456778888876554 88 888887 43 3344567788899999987663
No 13
>d1zavu1 a.108.1.1 (U:1-30) Ribosomal protein L7/12, oligomerisation (N-terminal) domain {Thermotoga maritima [TaxId: 2336]}
Probab=35.26 E-value=18 Score=21.20 Aligned_cols=28 Identities=21% Similarity=0.455 Sum_probs=20.4
Q ss_pred HHHHHHHhhccCcccHHHHHHHHHHHcC
Q psy3055 27 IQELLVAHKECKDVNLNQMKTRISSKYG 54 (219)
Q Consensus 27 i~~ii~~~~~~~~~~L~~~k~~i~rky~ 54 (219)
+.+|+++++.-+-.+|..+-+.+-.|||
T Consensus 3 ~eeiv~aiekltvaelaelvk~ledkfg 30 (30)
T d1zavu1 3 IDEIIEAIEKLTVSELAELVKKLEDKFG 30 (30)
T ss_dssp HHHHHHHHHHSBHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhhcC
Confidence 3566777776677788888888877775
No 14
>d1kica_ c.70.1.1 (A:) Inosine-adenosine-guanosine preferring nucleoside hydrolase {Trypanosoma vivax [TaxId: 5699]}
Probab=31.76 E-value=7 Score=31.78 Aligned_cols=15 Identities=20% Similarity=0.189 Sum_probs=11.8
Q ss_pred CccccceeecCCCccC
Q psy3055 167 DKEWEHVITTGNLAMN 182 (219)
Q Consensus 167 DKv~E~lIvmGGTf~~ 182 (219)
.|| +.+++|||+|..
T Consensus 156 ~~i-~~iviMGG~~~~ 170 (327)
T d1kica_ 156 SKV-EECVIMGGAVDV 170 (327)
T ss_dssp TTE-EEEEEECCCSSS
T ss_pred hhc-ceEEEEcccccC
Confidence 477 559999999853
No 15
>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=30.71 E-value=8.1 Score=22.20 Aligned_cols=7 Identities=57% Similarity=1.473 Sum_probs=6.0
Q ss_pred cCCCCCc
Q psy3055 99 KPHRCPH 105 (219)
Q Consensus 99 ~P~~CPH 105 (219)
|||.|++
T Consensus 1 kp~~C~~ 7 (30)
T d2glia3 1 KPHKCTF 7 (30)
T ss_dssp CCCCCCS
T ss_pred CCeeCCC
Confidence 6999997
No 16
>d1itxa1 c.1.8.5 (A:33-337,A:410-451) Chitinase A1 {Bacillus circulans [TaxId: 1397]}
Probab=30.66 E-value=6.6 Score=31.99 Aligned_cols=51 Identities=16% Similarity=0.210 Sum_probs=36.3
Q ss_pred CchHhHHHHHHHHHhcCCCCCccccceeecCC-C----ccCCCCCCCcHHHHHHHHHHhh
Q psy3055 147 NPYIQTRHRVEQLQQLGHSVDKEWEHVITTGN-L----AMNWMAPTCPSLWFQINLLSRT 201 (219)
Q Consensus 147 DPy~Q~~~Rl~qL~~~GH~vDKv~E~lIvmGG-T----f~~~~~p~~Yq~~Fi~~~~~al 201 (219)
||......++..|++..+.+ || +|=.|| + |+.+++....|+.||.++.+-+
T Consensus 104 ~~~~g~~~~~~~lK~~~p~l-Kv---llSiGGw~~s~~Fs~~~~~~~~R~~Fi~siv~~l 159 (347)
T d1itxa1 104 QPIAGNINQLNKLKQTNPNL-KT---IISVGGWTWSNRFSDVAATAATREVFANSAVDFL 159 (347)
T ss_dssp SSCCHHHHHHHHHHHHSTTC-EE---EEEEECSSSCTTHHHHHTSHHHHHHHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHhCCCC-EE---EEEEcCCCCCcchhhhhcCHHHHHHHHHHHHHHH
Confidence 45666778888888877655 77 676666 3 3344556788999999988654
No 17
>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=27.86 E-value=9.4 Score=21.93 Aligned_cols=7 Identities=29% Similarity=0.918 Sum_probs=5.8
Q ss_pred cCCCCCc
Q psy3055 99 KPHRCPH 105 (219)
Q Consensus 99 ~P~~CPH 105 (219)
|||.||+
T Consensus 1 kpf~C~~ 7 (31)
T d1sp2a_ 1 RPFMCTW 7 (31)
T ss_dssp CCCBCCS
T ss_pred CcCCCcC
Confidence 6999985
No 18
>d2jzaa1 b.33.1.3 (A:1-122) NADH-nitrite reductase small subunit NirD {Erwinia carotovora [TaxId: 554]}
Probab=25.95 E-value=13 Score=25.99 Aligned_cols=20 Identities=15% Similarity=0.180 Sum_probs=14.0
Q ss_pred CCCCccccC-----------CCceeeCCCCC
Q psy3055 101 HRCPHINMT-----------GNICVYCPGGP 120 (219)
Q Consensus 101 ~~CPHi~~t-----------gg~C~yCPggp 120 (219)
-.|||.... ++.|+.||---
T Consensus 44 ~~CpH~g~~ll~~G~v~~~~~~~~i~Cp~Hg 74 (122)
T d2jzaa1 44 NIDPFAQASVLSRGIVAEHQDDLWVASPLKK 74 (122)
T ss_dssp CCCTTTSSGGGTSSEEEESSSSEEEECSSSC
T ss_pred cCCCcccccccccceeeeccCCCEEECCCCC
Confidence 479997533 45679999754
No 19
>d1kfwa1 c.1.8.5 (A:10-327,A:389-444) Psychrophilic chitinase B {Arthrobacter sp., tad20 [TaxId: 1667]}
Probab=25.73 E-value=13 Score=30.93 Aligned_cols=52 Identities=13% Similarity=0.109 Sum_probs=35.7
Q ss_pred CchHhHHHHHHHHHhcCCCCCccccceeecCC-C----ccCCCCCCCcHHHHHHHHHHhhc
Q psy3055 147 NPYIQTRHRVEQLQQLGHSVDKEWEHVITTGN-L----AMNWMAPTCPSLWFQINLLSRTQ 202 (219)
Q Consensus 147 DPy~Q~~~Rl~qL~~~GH~vDKv~E~lIvmGG-T----f~~~~~p~~Yq~~Fi~~~~~al~ 202 (219)
+|..+...+|.+|++..+++ || +|=.|| + |+.+.+.+..|..||.++.+-+.
T Consensus 99 ~~~~~~~~~l~~lK~~~p~l-Kv---llSiGGw~~s~~F~~~a~~~~~R~~Fi~s~v~~~~ 155 (374)
T d1kfwa1 99 QPLAGSFNQLKQLKAKNPKL-KV---MISLGGWTWSKNFSKAAATEASRQKLVSSCIDLYI 155 (374)
T ss_dssp CSCCHHHHHHHHHHTTCTTC-EE---EEEEECSSSCTTHHHHTSSHHHHHHHHHHHHHHHT
T ss_pred ccchhhHHHHHHHHhhCCCC-eE---EEEEeCCCCCCccchhhcCHHHHHHHHHHHHHHHH
Confidence 35667778888898875554 77 777777 2 22233466789999999976553
No 20
>d2masa_ c.70.1.1 (A:) Inosine-uridine nucleoside N-ribohydrolase, IU-NH {Crithidia fasciculata [TaxId: 5656]}
Probab=25.68 E-value=9.6 Score=30.42 Aligned_cols=15 Identities=27% Similarity=0.317 Sum_probs=11.5
Q ss_pred CCccccceeecCCCcc
Q psy3055 166 VDKEWEHVITTGNLAM 181 (219)
Q Consensus 166 vDKv~E~lIvmGGTf~ 181 (219)
..|| ++++||||+|.
T Consensus 142 ~~~i-k~iviMGG~~~ 156 (313)
T d2masa_ 142 VDRV-KEVVLMGGGYH 156 (313)
T ss_dssp HHHS-CEEEEECCCSS
T ss_pred hhhc-CeEEEeccCCC
Confidence 3466 55999999985
No 21
>d1h3oa_ a.22.1.3 (A:) TAF(II)-135, (TAF(II)-130, hTAF4), histone fold domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=21.94 E-value=31 Score=22.22 Aligned_cols=38 Identities=21% Similarity=0.318 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHcCCCCC-CCHHHHHhhCChhHHHhhhhh
Q psy3055 42 LNQMKTRISSKYGLDTS-PRLVDIIAAVPAEAKKILLPK 79 (219)
Q Consensus 42 L~~~k~~i~rky~L~~~-P~~~dIl~a~p~e~~~~L~~~ 79 (219)
|.+-..++++||||... |.-..+++.+..|.-+.|+.+
T Consensus 8 Lq~ri~~I~~k~Gl~e~~~dV~~lISHA~QeRLk~lvEK 46 (50)
T d1h3oa_ 8 LQRRILEIGKKHGITELHPDVVSYVSHATQQRLQNLVEK 46 (50)
T ss_dssp HHHHHHHHHHTTTCCEECTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCccCHHHHHHHHHHHHHHHHHHHHH
Confidence 55566789999999866 455566666665543444333
No 22
>d1tv8a_ c.1.28.3 (A:) Molybdenum cofactor biosynthesis protein A MoaA {Staphylococcus aureus [TaxId: 1280]}
Probab=21.82 E-value=62 Score=24.11 Aligned_cols=15 Identities=13% Similarity=0.266 Sum_probs=10.0
Q ss_pred hHhHHHHHHHHHhcC
Q psy3055 149 YIQTRHRVEQLQQLG 163 (219)
Q Consensus 149 y~Q~~~Rl~qL~~~G 163 (219)
..+...=++++.++|
T Consensus 50 ~e~~~~li~~~~~~g 64 (327)
T d1tv8a_ 50 FDEMARIAKVYAELG 64 (327)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcC
Confidence 345555677788877
No 23
>d1ubdc3 g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.94 E-value=11 Score=21.43 Aligned_cols=7 Identities=43% Similarity=1.127 Sum_probs=5.8
Q ss_pred cCCCCCc
Q psy3055 99 KPHRCPH 105 (219)
Q Consensus 99 ~P~~CPH 105 (219)
|||.|++
T Consensus 1 kp~~C~~ 7 (30)
T d1ubdc3 1 KPFQCTF 7 (30)
T ss_dssp CCEECCS
T ss_pred CCccCCC
Confidence 6899986
No 24
>d1ubdc4 g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.88 E-value=16 Score=20.71 Aligned_cols=7 Identities=43% Similarity=1.193 Sum_probs=5.9
Q ss_pred cCCCCCc
Q psy3055 99 KPHRCPH 105 (219)
Q Consensus 99 ~P~~CPH 105 (219)
|||.|++
T Consensus 1 rPf~C~~ 7 (28)
T d1ubdc4 1 RPYVCPF 7 (28)
T ss_dssp CCCCCCS
T ss_pred CCcCCCC
Confidence 6999996
No 25
>d1whua_ a.4.9.1 (A:) Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=20.09 E-value=1.3e+02 Score=20.57 Aligned_cols=79 Identities=19% Similarity=0.204 Sum_probs=53.8
Q ss_pred CCCCCCChhhHHHHHHHHHHHHHHHHhh-c--cC----cccHHHHHHHHHHHcCCCCCCC--HHHHHhhCChhHHHhhhh
Q psy3055 8 GPISKLSIDERTVLTIGEIIQELLVAHK-E--CK----DVNLNQMKTRISSKYGLDTSPR--LVDIIAAVPAEAKKILLP 78 (219)
Q Consensus 8 ~~~~~~~~~e~~~~~~~eii~~ii~~~~-~--~~----~~~L~~~k~~i~rky~L~~~P~--~~dIl~a~p~e~~~~L~~ 78 (219)
+|..-....+.++..+.+++.+=|...- . .+ ...+..+|..+...+. ...|. ..+|-.++..-.++.++.
T Consensus 7 ~P~~~f~~~eel~~~V~~~~~~ki~~a~~~~~~dK~eR~~al~~ik~ei~~~l~-e~~~~~~~~~i~~af~~v~k~ivR~ 85 (104)
T d1whua_ 7 GPQKIFTPSAEIVKYTKIIAMEKLYAVFTDYEHDKVSRDEAVNKIRLDTEEHLK-EKFPEVDQFEIIESFNIVAKEVFRS 85 (104)
T ss_dssp SSCCCCCCCHHHHHHHHHHHHHHHHHHHSSCCSCSHHHHHHHHHHHHHHHHHHT-TTCSSSCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHh-hcccccCHHHHHHHHHHHHHHHHHH
Confidence 3444333345678888888877666542 1 11 2468999999999886 44553 457777888888888888
Q ss_pred hhhhCCccc
Q psy3055 79 KLKAKPIRT 87 (219)
Q Consensus 79 ~L~~KPvRT 87 (219)
.+..+-+|.
T Consensus 86 ~IL~~~~Ri 94 (104)
T d1whua_ 86 IILNEYKRC 94 (104)
T ss_dssp HHTTSSCSC
T ss_pred HHHcCCCcC
Confidence 888887774
Done!