RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy3055
         (219 letters)



>gnl|CDD|233314 TIGR01211, ELP3, histone acetyltransferase, ELP3 family.  The
           Saccharomyces cerevisiae member YPL086C has been
           characterized in vitro as an N-terminal
           acetyltransferase for all four core histones. It is a
           component of the RNA polymerase II holoenzyme,
           designated Elp3p for Elongator Protein 3. Members of
           this family are found in eukaryotes and archaea. These
           proteins are part of the larger set of GNAT
           acetyltransferases [Transcription, DNA-dependent RNA
           polymerase].
          Length = 522

 Score =  192 bits (490), Expect = 1e-58
 Identities = 74/144 (51%), Positives = 92/144 (63%), Gaps = 8/144 (5%)

Query: 25  EIIQELLVAHKECKDVNLNQMKTRISSKYGLDTSPRLVDIIAAVPAEAKKILLPKLKAKP 84
           EI+  LL      K+ +L  +K  +S KYGL   P   +I+ + P E KK L P L+ KP
Sbjct: 1   EIVDSLLSGKTRDKE-DLEDLKLEVSRKYGLSKVPSNSEILNSAPDEEKKKLEPILRKKP 59

Query: 85  IRTASGIAVVAVMCKPHRCPHINMTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRA 144
           +RT SG+AVVAVM  PHRCPH       C+YCPGGPDS  E S QSYTGYEP +MR  + 
Sbjct: 60  VRTISGVAVVAVMTSPHRCPHGK-----CLYCPGGPDS--ENSPQSYTGYEPAAMRGRQN 112

Query: 145 RYNPYIQTRHRVEQLQQLGHSVDK 168
            Y+PY Q   R+EQL+Q+GH VDK
Sbjct: 113 DYDPYEQVTARLEQLEQIGHPVDK 136


>gnl|CDD|224164 COG1243, ELP3, Histone acetyltransferase [Transcription / Chromatin
           structure and dynamics].
          Length = 515

 Score =  181 bits (462), Expect = 1e-54
 Identities = 72/144 (50%), Positives = 92/144 (63%), Gaps = 12/144 (8%)

Query: 25  EIIQELLVAHKECKDVNLNQMKTRISSKYGLDTSPRLVDIIAAVPAEAKKILLPKLKAKP 84
           EI++ELL    E K   L  +K  +S KYGL   PR  DI+ A P E +  L   L+ KP
Sbjct: 3   EIVEELLSG--EIKKKELEDLKLEVSRKYGLSKVPRNSDILNAAPPEER--LREILRRKP 58

Query: 85  IRTASGIAVVAVMCKPHRCPHINMTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRA 144
           +RT SG+AVVAVM  PH CPH       CV+CPGGPD   + S QSYTG EP ++RAI+ 
Sbjct: 59  VRTISGVAVVAVMTSPHGCPH-----GRCVFCPGGPD---KDSPQSYTGEEPAALRAIKN 110

Query: 145 RYNPYIQTRHRVEQLQQLGHSVDK 168
           RY+PY Q R R++QL+ +GH+ DK
Sbjct: 111 RYDPYEQVRARLKQLETIGHTSDK 134


>gnl|CDD|215108 PLN00222, PLN00222, tubulin gamma chain; Provisional.
          Length = 454

 Score = 32.5 bits (74), Expect = 0.14
 Identities = 13/46 (28%), Positives = 23/46 (50%)

Query: 125 EYSTQSYTGYEPTSMRAIRARYNPYIQTRHRVEQLQQLGHSVDKEW 170
           E    ++  + P S++   +R +PY+QT HRV  L    H+  +  
Sbjct: 344 ERKLANFIEWGPASIQVALSRKSPYVQTAHRVSGLMLANHTSIRHL 389


>gnl|CDD|217544 pfam03415, Peptidase_C11, Clostripain family. 
          Length = 359

 Score = 29.4 bits (66), Expect = 1.3
 Identities = 7/40 (17%), Positives = 16/40 (40%), Gaps = 1/40 (2%)

Query: 111 NICVYCPGGPD-SDFEYSTQSYTGYEPTSMRAIRARYNPY 149
           ++ +Y  G     + E      + + P +  + +  YN Y
Sbjct: 301 SVVIYSYGEKSNKNIEEGVNGGSIFLPENNSSQQYWYNDY 340


>gnl|CDD|100017 cd02188, gamma_tubulin, Gamma-tubulin is a ubiquitous
           phylogenetically conserved member of tubulin
           superfamily.  Gamma is a low abundance protein present
           within the cells in both various types of
           microtubule-organizing centers and cytoplasmic protein
           complexes.  Gamma-tubulin recruits the
           alpha/beta-tubulin dimers that form the minus ends of
           microtubules and is thought to be involved in
           microtubule nucleation and capping.
          Length = 431

 Score = 29.1 bits (66), Expect = 1.9
 Identities = 10/30 (33%), Positives = 17/30 (56%)

Query: 136 PTSMRAIRARYNPYIQTRHRVEQLQQLGHS 165
           P S++   ++ +PY+ T HRV  L    H+
Sbjct: 349 PASIQVALSKKSPYVPTAHRVSGLMLANHT 378


>gnl|CDD|130336 TIGR01269, Tyr_3_monoox, tyrosine 3-monooxygenase, tetrameric.
           This model describes tyrosine 3-monooxygenase, a member
           of the family of tetrameric, biopterin-dependent
           aromatic amino acid hydroxylases found in metazoans. It
           is closely related to tetrameric
           phenylalanine-4-hydroxylase and tryptophan
           5-monooxygenase, and more distantly related to the
           monomeric phenylalanine-4-hydroxylase found in some
           Gram-negative bacteria.
          Length = 457

 Score = 28.0 bits (62), Expect = 5.1
 Identities = 15/58 (25%), Positives = 25/58 (43%), Gaps = 3/58 (5%)

Query: 124 FEYSTQSYTGYEPTSMRAIRARYNPYIQTRH---RVEQLQQLGHSVDKEWEHVITTGN 178
           FE + +    Y  TS R    R++P  +T     R  + ++L   V +E   + T  N
Sbjct: 397 FEDAKRKLRNYINTSGRPFIVRFDPITETVEVLDRFSKRKELLKHVKEEIGQLTTALN 454


>gnl|CDD|180686 PRK06769, PRK06769, hypothetical protein; Validated.
          Length = 173

 Score = 27.0 bits (60), Expect = 5.6
 Identities = 26/89 (29%), Positives = 37/89 (41%), Gaps = 29/89 (32%)

Query: 22  TIGEIIQEL---------LVAHK-----ECKDVNLNQMKTRISSKYGLDTS------PRL 61
           TI + +QEL         L  HK     EC+  +   M  + + K+GLD +       R 
Sbjct: 62  TIADFVQELKGFGFDDIYLCPHKHGDGCECRKPS-TGMLLQAAEKHGLDLTQCAVIGDRW 120

Query: 62  VDIIAAVPAEAKKILLPKLKAKPIRTASG 90
            DI+AA    A  IL        +RT +G
Sbjct: 121 TDIVAAAKVNATTIL--------VRTGAG 141


>gnl|CDD|234066 TIGR02940, anfO_nitrog, Fe-only nitrogenase accessory protein AnfO.
            Members of this protein family, called Anf1 in
           Rhodobacter capsulatus and AnfO in Azotobacter
           vinelandii, are found only in species with the Fe-only
           nitrogenase and are encoded immediately downstream of
           the structural genes in the above named species.
          Length = 214

 Score = 27.1 bits (60), Expect = 6.6
 Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 1/27 (3%)

Query: 61  LVDIIAAVPA-EAKKILLPKLKAKPIR 86
           L  I+A  P   ++KIL+P LK KP R
Sbjct: 149 LEAILADDPRLNSRKILIPVLKGKPFR 175


>gnl|CDD|215254 PLN02460, PLN02460, indole-3-glycerol-phosphate synthase.
          Length = 338

 Score = 27.0 bits (60), Expect = 7.0
 Identities = 23/68 (33%), Positives = 30/68 (44%), Gaps = 11/68 (16%)

Query: 27  IQELLVAHKECKDVNLNQMKTRI---SSKYGLDTSPRLVDIIAAVPAEAKKILLPKL--- 80
           I E +V +   KDV + QMK R      K  L  +P   D + A+ A  K+   P L   
Sbjct: 68  ILEEIVWY---KDVEVAQMKERKPLYLLKKALQNAPPARDFVGALRAAHKRTGQPGLIAE 124

Query: 81  --KAKPIR 86
             KA P R
Sbjct: 125 VKKASPSR 132


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.319    0.133    0.411 

Gapped
Lambda     K      H
   0.267   0.0638    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 10,853,383
Number of extensions: 967421
Number of successful extensions: 873
Number of sequences better than 10.0: 1
Number of HSP's gapped: 868
Number of HSP's successfully gapped: 12
Length of query: 219
Length of database: 10,937,602
Length adjustment: 93
Effective length of query: 126
Effective length of database: 6,812,680
Effective search space: 858397680
Effective search space used: 858397680
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (25.9 bits)