RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy3055
(219 letters)
>d1m7xa3 c.1.8.1 (A:227-622) 1,4-alpha-glucan branching enzyme,
central domain {Escherichia coli [TaxId: 562]}
Length = 396
Score = 31.1 bits (69), Expect = 0.093
Identities = 11/73 (15%), Positives = 21/73 (28%)
Query: 124 FEYSTQSYTGYEPTSMRAIRARYNPYIQTRHRVEQLQQLGHSVDKEWEHVITTGNLAMNW 183
E+ GY+PT + A R+ R+ ++ G +V +W +
Sbjct: 64 NEHPFDGSWGYQPTGLYAPTRRFGTRDDFRYFIDAAHAAGLNVILDWVPGHFPTDDFALA 123
Query: 184 MAPTCPSLWFQIN 196
Sbjct: 124 EFDGTNLYEHSDP 136
>d1ussa_ a.4.5.13 (A:) Histone H1 homologue Hho1p {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 88
Score = 26.0 bits (57), Expect = 1.7
Identities = 11/73 (15%), Positives = 25/73 (34%), Gaps = 5/73 (6%)
Query: 21 LTIGEIIQELLVAHKECKDVNLNQMKTRISSKYGLDTSP-----RLVDIIAAVPAEAKKI 75
LT E+I + + + K + +K + + L + E ++
Sbjct: 8 LTYKEMILKSMPQLNDGKGSSRIVLKKYVKDTFSSKLKTSSNFDYLFNSAIKKCVENGEL 67
Query: 76 LLPKLKAKPIRTA 88
+ PK + I+
Sbjct: 68 VQPKGPSGIIKLN 80
>d1eh9a3 c.1.8.1 (A:91-490) Glycosyltrehalose trehalohydrolase,
central domain {Archaeon Sulfolobus solfataricus, km1
[TaxId: 2287]}
Length = 400
Score = 26.9 bits (58), Expect = 2.0
Identities = 12/73 (16%), Positives = 25/73 (34%), Gaps = 2/73 (2%)
Query: 124 FEYSTQSYTGYEPTSMRAIRARYNPYIQTRHRVEQLQQLG--HSVDKEWEHVITTGNLAM 181
++ + GY+ + A++ Y R V++ + G +D + HV GN +
Sbjct: 52 AQFPGKRDWGYDGVYLYAVQNSYGGPEGFRKLVDEAHKKGLGVILDVVYNHVGPEGNYMV 111
Query: 182 NWMAPTCPSLWFQ 194
Sbjct: 112 KLGPYFSQKYKTP 124
>d2bhua3 c.1.8.1 (A:111-530) Glycosyltrehalose trehalohydrolase,
central domain {Deinococcus radiodurans [TaxId: 1299]}
Length = 420
Score = 27.0 bits (58), Expect = 2.2
Identities = 13/96 (13%), Positives = 25/96 (26%), Gaps = 6/96 (6%)
Query: 124 FEYSTQSYTGYEPTSMRAIRARY------NPYIQTRHRVEQLQQLGHSVDKEWEHVITTG 177
+ Q GY+ + A A Y + HR+ L +
Sbjct: 57 AAFDGQRGWGYDGAAFYAPYAPYGRPEDLMALVDAAHRLGLGVFLDVVYNHFGPSGNYLS 116
Query: 178 NLAMNWMAPTCPSLWFQINLLSRTQWKKCNQGEHLN 213
+ A ++ S W + ++ G
Sbjct: 117 SYAPSYFTDRFSSAWGMGLDYAEPHMRRYVTGNARM 152
>d1toha_ d.178.1.1 (A:) Tyrosine hydroxylase {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 336
Score = 26.7 bits (59), Expect = 2.7
Identities = 8/55 (14%), Positives = 15/55 (27%), Gaps = 3/55 (5%)
Query: 122 SDFEYSTQSYTGYEPTSMRAIRARYNPYIQTRH---RVEQLQQLGHSVDKEWEHV 173
F + Y R +++PY +Q+ V E +
Sbjct: 274 ESFNDAKDKLRNYASRIQRPFSVKFDPYTLAIDVLDSPHTIQRSLEGVQDELHTL 328
>d1j8ba_ d.222.1.1 (A:) Hypothetical protein HI0442 {Haemophilus
influenzae [TaxId: 727]}
Length = 92
Score = 24.6 bits (54), Expect = 4.0
Identities = 8/48 (16%), Positives = 20/48 (41%), Gaps = 1/48 (2%)
Query: 5 NKHGPISKLSIDERTVLTIGEIIQELLV-AHKECKDVNLNQMKTRISS 51
N ++ ID + E++++L+ A + K +++S
Sbjct: 41 NGAHNCRRIDIDPSLMEDDKEMLEDLIAAAFNDAVRRAEELQKEKMAS 88
>d1r0re_ c.41.1.1 (E:) Subtilisin {Bacillus subtilis, carlsberg
[TaxId: 1423]}
Length = 274
Score = 25.3 bits (54), Expect = 5.8
Identities = 17/56 (30%), Positives = 23/56 (41%), Gaps = 1/56 (1%)
Query: 84 PIRTASGIAVVAVMCKPHRCPHINMTGNICVYCPGGPDSDFEYSTQSYTGYEPTSM 139
P + S IAV AV +R ++ + V PG Y T +Y TSM
Sbjct: 167 PAKYDSVIAVGAVDSNSNRASFSSVGAELEVMAPGA-GVYSTYPTNTYATLNGTSM 221
>d1gpqa_ d.233.1.1 (A:) Inhibitor of vertebrate lysozyme, Ivy
{Escherichia coli [TaxId: 562]}
Length = 127
Score = 24.4 bits (53), Expect = 7.1
Identities = 6/15 (40%), Positives = 7/15 (46%)
Query: 94 VAVMCKPHRCPHINM 108
V CKPH C +
Sbjct: 52 VMSACKPHDCGSQRI 66
>d1iv8a2 c.1.8.1 (A:1-653) Maltooligosyl trehalose synthase
{Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}
Length = 653
Score = 25.3 bits (55), Expect = 8.1
Identities = 5/23 (21%), Positives = 6/23 (26%)
Query: 124 FEYSTQSYTGYEPTSMRAIRARY 146
S S GY+ I
Sbjct: 40 LMASPGSNHGYDVIDHSRINDEL 62
>d1ncqa_ b.121.4.1 (A:) Rhinovirus coat proteins {Human rhinovirus B
14 (HRV-14) [TaxId: 12131]}
Length = 273
Score = 24.7 bits (54), Expect = 8.4
Identities = 4/14 (28%), Positives = 10/14 (71%)
Query: 183 WMAPTCPSLWFQIN 196
W + + PS++F++
Sbjct: 152 WQSASNPSVFFKVG 165
>d1vkoa1 c.2.1.3 (A:11-314,A:429-521) Myo-inositol 1-phosphate
synthase {Caenorhabditis elegans [TaxId: 6239]}
Length = 397
Score = 24.8 bits (54), Expect = 9.0
Identities = 28/155 (18%), Positives = 52/155 (33%), Gaps = 15/155 (9%)
Query: 57 TSPRLVDIIAAVPAEAKKILLPKLKAKPIRTASGIAVVAVMCKPHRCPHINMTGNICVYC 116
+ R D+ + A A +I+ + + S I AV +IN + +
Sbjct: 228 NTERYTDVRQGLNATADEIMESIRVNEDEVSPSNI--FAVASILEGAHYINGSPQNTL-V 284
Query: 117 PGGPDSDFEYSTQS---YTGYEPTSMRAIRARYNPYIQTRHRVEQLQQLGHSVDKEWEHV 173
PG E + + G + S+ A Y+ I T ++ + VD E++
Sbjct: 285 PGL----IELAERHKVFVGGDDFKSLLASPLIYDLAILTEL----ASRVSYKVDDEYKPF 336
Query: 174 ITTGNLAMNWM-APTCPSLWFQINLLSRTQWKKCN 207
+ ++ + AP P N R
Sbjct: 337 HSVLSILSLLLKAPVVPPGTPISNAFMRQFSTLTK 371
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.133 0.411
Gapped
Lambda K H
0.267 0.0527 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 815,109
Number of extensions: 35811
Number of successful extensions: 128
Number of sequences better than 10.0: 1
Number of HSP's gapped: 128
Number of HSP's successfully gapped: 21
Length of query: 219
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 137
Effective length of database: 1,281,736
Effective search space: 175597832
Effective search space used: 175597832
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (23.9 bits)