BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3058
(244 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P16901|POL_OMVVS Pol polyprotein OS=Ovine maedi visna related virus (strain South
Africa) GN=pol PE=3 SV=1
Length = 1086
Score = 42.7 bits (99), Expect = 0.002, Method: Composition-based stats.
Identities = 20/63 (31%), Positives = 35/63 (55%)
Query: 33 PDNILIFTDSKSLISSMQQLFCKNILIHDIQVACHKLILKGNNVKIIWIPSHCGIAGNEE 92
P+ + I TDS+ M++ + + ++ + IQ KL+ + + W+P H GI NEE
Sbjct: 604 PEKMNIVTDSRYAYEFMRRNWDEEVIKNPIQARIMKLVHDKEQIGVHWVPGHKGIPQNEE 663
Query: 93 VDK 95
+DK
Sbjct: 664 IDK 666
>sp|P19028|POL_FIVSD Pol polyprotein OS=Feline immunodeficiency virus (strain San Diego)
GN=pol PE=3 SV=1
Length = 1124
Score = 40.4 bits (93), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 37/69 (53%), Gaps = 3/69 (4%)
Query: 33 PDNILIFTDSKSLISSMQQLFCKNILIHDIQVACHKLILKGNNVKIIWIPSHCGIAGNEE 92
P+ + I TDS+ +I+ + Q K + I + + K + I W+P H GI GNEE
Sbjct: 646 PEEMNIITDSQYMINILSQQPDK---MEGIWQEVLEELEKKTAIFIDWVPGHKGIPGNEE 702
Query: 93 VDKAAQSFI 101
VDK Q+ +
Sbjct: 703 VDKLCQTMM 711
>sp|P23427|POL_VILV2 Pol polyprotein OS=Maedi visna virus (strain 1514 / clone LV1-1KS2)
GN=pol PE=3 SV=1
Length = 1105
Score = 38.9 bits (89), Expect = 0.030, Method: Composition-based stats.
Identities = 18/63 (28%), Positives = 34/63 (53%)
Query: 33 PDNILIFTDSKSLISSMQQLFCKNILIHDIQVACHKLILKGNNVKIIWIPSHCGIAGNEE 92
P+ + I TDS+ M + + + ++ + IQ +L+ + + W+P H GI NEE
Sbjct: 623 PEKMNIVTDSRYAYEFMLRNWDEEVIRNPIQARIMELVHNKEKIGVHWVPGHKGIPQNEE 682
Query: 93 VDK 95
+D+
Sbjct: 683 IDR 685
>sp|P35956|POL_VILVK Pol polyprotein OS=Maedi visna virus (strain KV1772) GN=pol PE=1
SV=1
Length = 1101
Score = 38.9 bits (89), Expect = 0.031, Method: Composition-based stats.
Identities = 18/63 (28%), Positives = 34/63 (53%)
Query: 33 PDNILIFTDSKSLISSMQQLFCKNILIHDIQVACHKLILKGNNVKIIWIPSHCGIAGNEE 92
P+ + I TDS+ M + + + ++ + IQ +L+ + + W+P H GI NEE
Sbjct: 619 PEKMNIVTDSRYAYEFMLRNWDEEVIRNPIQARIMELVHNKEKIGVHWVPGHKGIPQNEE 678
Query: 93 VDK 95
+D+
Sbjct: 679 IDR 681
>sp|P03370|POL_VILV Pol polyprotein OS=Maedi visna virus (strain 1514) GN=pol PE=3 SV=1
Length = 1105
Score = 38.9 bits (89), Expect = 0.031, Method: Composition-based stats.
Identities = 18/63 (28%), Positives = 34/63 (53%)
Query: 33 PDNILIFTDSKSLISSMQQLFCKNILIHDIQVACHKLILKGNNVKIIWIPSHCGIAGNEE 92
P+ + I TDS+ M + + + ++ + IQ +L+ + + W+P H GI NEE
Sbjct: 623 PEKMNIVTDSRYAYEFMLRNWDEEVIRNPIQARIMELVHNKEKIGVHWVPGHKGIPQNEE 682
Query: 93 VDK 95
+D+
Sbjct: 683 IDR 685
>sp|P23426|POL_VILV1 Pol polyprotein OS=Maedi visna virus (strain 1514 / clone LV1-1KS1)
GN=pol PE=3 SV=1
Length = 1105
Score = 38.5 bits (88), Expect = 0.046, Method: Composition-based stats.
Identities = 18/63 (28%), Positives = 34/63 (53%)
Query: 33 PDNILIFTDSKSLISSMQQLFCKNILIHDIQVACHKLILKGNNVKIIWIPSHCGIAGNEE 92
P+ + I TDS+ M + + + ++ + IQ +L+ + + W+P H GI NEE
Sbjct: 623 PEKMNIVTDSRYAYEFMLRNWDEEVIRNPIQARIMELMHNKEKIGVHWVPGHKGIPQNEE 682
Query: 93 VDK 95
+D+
Sbjct: 683 IDR 685
>sp|P33459|POL_CAEVC Pol polyprotein OS=Caprine arthritis encephalitis virus (strain
Cork) GN=pol PE=3 SV=1
Length = 1109
Score = 37.4 bits (85), Expect = 0.100, Method: Composition-based stats.
Identities = 17/63 (26%), Positives = 34/63 (53%)
Query: 33 PDNILIFTDSKSLISSMQQLFCKNILIHDIQVACHKLILKGNNVKIIWIPSHCGIAGNEE 92
P + + TDS+ + + + + ++ + IQ ++ K + + + W+P H GI NEE
Sbjct: 628 PQTMNLVTDSRYAFEFLLRNWDEEVIKNPIQARIMEIAHKKDRIGVHWVPGHKGIPQNEE 687
Query: 93 VDK 95
+DK
Sbjct: 688 IDK 690
>sp|Q9QBZ9|POL_HV197 Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype K (isolate 97ZR-EQTB11) GN=gag-pol PE=3 SV=2
Length = 1429
Score = 37.4 bits (85), Expect = 0.10, Method: Composition-based stats.
Identities = 15/32 (46%), Positives = 22/32 (68%)
Query: 70 ILKGNNVKIIWIPSHCGIAGNEEVDKAAQSFI 101
++K + V + W+P+H GI GNE+VDK S I
Sbjct: 1107 LIKKDRVYLSWVPAHKGIGGNEQVDKLVSSGI 1138
>sp|O89940|POL_HV1SE Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype G (isolate SE6165) GN=gag-pol PE=3 SV=3
Length = 1433
Score = 37.0 bits (84), Expect = 0.14, Method: Composition-based stats.
Identities = 15/32 (46%), Positives = 21/32 (65%)
Query: 70 ILKGNNVKIIWIPSHCGIAGNEEVDKAAQSFI 101
++K V + W+P+H GI GNE+VDK S I
Sbjct: 1110 LIKKEKVYLSWVPAHKGIGGNEQVDKLVSSGI 1141
>sp|O41798|POL_HV19N Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype G (isolate 92NG083) GN=gag-pol PE=3 SV=3
Length = 1435
Score = 37.0 bits (84), Expect = 0.14, Method: Composition-based stats.
Identities = 15/32 (46%), Positives = 21/32 (65%)
Query: 70 ILKGNNVKIIWIPSHCGIAGNEEVDKAAQSFI 101
++K V + W+P+H GI GNE+VDK S I
Sbjct: 1112 LIKKEKVYLSWVPAHKGIGGNEQVDKLVSSGI 1143
>sp|O91080|POL_HV1YF Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group N
(isolate YBF30) GN=gag-pol PE=3 SV=3
Length = 1449
Score = 36.6 bits (83), Expect = 0.15, Method: Composition-based stats.
Identities = 15/32 (46%), Positives = 21/32 (65%)
Query: 70 ILKGNNVKIIWIPSHCGIAGNEEVDKAAQSFI 101
++K V + W+P+H GI GNE+VDK S I
Sbjct: 1122 LIKKERVYLSWVPAHKGIGGNEQVDKLVSSGI 1153
>sp|Q9WC63|POL_HV1S9 Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype J (isolate SE9173) GN=gag-pol PE=3 SV=3
Length = 1432
Score = 36.6 bits (83), Expect = 0.15, Method: Composition-based stats.
Identities = 15/32 (46%), Positives = 21/32 (65%)
Query: 70 ILKGNNVKIIWIPSHCGIAGNEEVDKAAQSFI 101
++K V + W+P+H GI GNE+VDK S I
Sbjct: 1109 LIKKEKVYLSWVPAHKGIGGNEQVDKLVSSGI 1140
>sp|Q9WC54|POL_HV1S2 Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype J (isolate SE9280) GN=gag-pol PE=3 SV=3
Length = 1432
Score = 36.6 bits (83), Expect = 0.15, Method: Composition-based stats.
Identities = 15/32 (46%), Positives = 21/32 (65%)
Query: 70 ILKGNNVKIIWIPSHCGIAGNEEVDKAAQSFI 101
++K V + W+P+H GI GNE+VDK S I
Sbjct: 1109 LIKKEKVYLSWVPAHKGIGGNEQVDKLVSSGI 1140
>sp|P16088|POL_FIVPE Pol polyprotein OS=Feline immunodeficiency virus (isolate Petaluma)
GN=pol PE=1 SV=1
Length = 1124
Score = 36.6 bits (83), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 35/64 (54%), Gaps = 3/64 (4%)
Query: 38 IFTDSKSLISSMQQLFCKNILIHDIQVACHKLILKGNNVKIIWIPSHCGIAGNEEVDKAA 97
I TDS+ +I+ + Q + ++ I + + K + I W+P H GI GNEEVDK
Sbjct: 651 IITDSQYVINIILQ---QPDMMEGIWQEVLEELEKKTAIFIDWVPGHKGIPGNEEVDKLC 707
Query: 98 QSFI 101
Q+ +
Sbjct: 708 QTMM 711
>sp|O12158|POL_HV192 Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype C (isolate 92BR025) GN=gag-pol PE=1 SV=2
Length = 1431
Score = 36.6 bits (83), Expect = 0.18, Method: Composition-based stats.
Identities = 15/32 (46%), Positives = 21/32 (65%)
Query: 70 ILKGNNVKIIWIPSHCGIAGNEEVDKAAQSFI 101
++K V + W+P+H GI GNE+VDK S I
Sbjct: 1108 LIKKERVYLSWVPAHKGIGGNEQVDKLVSSGI 1139
>sp|O93215|POL_HV190 Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype H (isolate 90CF056) GN=gag-pol PE=3 SV=4
Length = 1435
Score = 36.2 bits (82), Expect = 0.19, Method: Composition-based stats.
Identities = 14/30 (46%), Positives = 20/30 (66%)
Query: 70 ILKGNNVKIIWIPSHCGIAGNEEVDKAAQS 99
++K V + W+P+H GI GNE+VDK S
Sbjct: 1112 LIKKEKVYLSWVPAHKGIGGNEQVDKLVSS 1141
>sp|Q1A267|POL_SIVMB Gag-Pol polyprotein OS=Simian immunodeficiency virus (isolate MB66)
GN=gag-pol PE=3 SV=4
Length = 1438
Score = 36.2 bits (82), Expect = 0.19, Method: Composition-based stats.
Identities = 14/32 (43%), Positives = 21/32 (65%)
Query: 70 ILKGNNVKIIWIPSHCGIAGNEEVDKAAQSFI 101
++K V + W+P+H GI GNE++DK S I
Sbjct: 1111 LIKKEKVYLSWVPAHKGIGGNEQIDKLVSSGI 1142
>sp|P04588|POL_HV1MA Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype A (isolate MAL) GN=gag-pol PE=1 SV=3
Length = 1440
Score = 36.2 bits (82), Expect = 0.24, Method: Composition-based stats.
Identities = 14/32 (43%), Positives = 22/32 (68%)
Query: 70 ILKGNNVKIIWIPSHCGIAGNEEVDKAAQSFI 101
+++ + V + W+P+H GI GNE+VDK S I
Sbjct: 1117 LIQKDKVYLSWVPAHKGIGGNEQVDKLVSSGI 1148
>sp|P18802|POL_HV1ND Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype D (isolate NDK) GN=gag-pol PE=3 SV=3
Length = 1432
Score = 36.2 bits (82), Expect = 0.24, Method: Composition-based stats.
Identities = 13/26 (50%), Positives = 19/26 (73%)
Query: 70 ILKGNNVKIIWIPSHCGIAGNEEVDK 95
++K V + W+P+H GI GNE+VDK
Sbjct: 1109 LIKKEKVYLAWVPAHKGIGGNEQVDK 1134
>sp|P05961|POL_HV1MN Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype B (isolate MN) GN=gag-pol PE=1 SV=3
Length = 1441
Score = 36.2 bits (82), Expect = 0.24, Method: Composition-based stats.
Identities = 14/32 (43%), Positives = 21/32 (65%)
Query: 70 ILKGNNVKIIWIPSHCGIAGNEEVDKAAQSFI 101
++K V + W+P+H GI GNE+VDK + I
Sbjct: 1118 LIKKEKVYLAWVPAHKGIGGNEQVDKLVSAGI 1149
>sp|P20875|POL_HV1JR Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype B (isolate JRCSF) GN=gag-pol PE=1 SV=3
Length = 1439
Score = 36.2 bits (82), Expect = 0.24, Method: Composition-based stats.
Identities = 14/32 (43%), Positives = 21/32 (65%)
Query: 70 ILKGNNVKIIWIPSHCGIAGNEEVDKAAQSFI 101
++K V + W+P+H GI GNE+VDK + I
Sbjct: 1116 LIKKEKVYLAWVPAHKGIGGNEQVDKLVSAGI 1147
>sp|P04585|POL_HV1H2 Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype B (isolate HXB2) GN=gag-pol PE=1 SV=4
Length = 1435
Score = 36.2 bits (82), Expect = 0.24, Method: Composition-based stats.
Identities = 14/32 (43%), Positives = 21/32 (65%)
Query: 70 ILKGNNVKIIWIPSHCGIAGNEEVDKAAQSFI 101
++K V + W+P+H GI GNE+VDK + I
Sbjct: 1112 LIKKEKVYLAWVPAHKGIGGNEQVDKLVSAGI 1143
>sp|P35963|POL_HV1Y2 Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype B (isolate YU-2) GN=gag-pol PE=1 SV=3
Length = 1435
Score = 36.2 bits (82), Expect = 0.25, Method: Composition-based stats.
Identities = 14/32 (43%), Positives = 21/32 (65%)
Query: 70 ILKGNNVKIIWIPSHCGIAGNEEVDKAAQSFI 101
++K V + W+P+H GI GNE+VDK + I
Sbjct: 1112 LIKKEKVYLAWVPAHKGIGGNEQVDKLVSAGI 1143
>sp|P03367|POL_HV1BR Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype B (isolate BRU/LAI) GN=gag-pol PE=1 SV=3
Length = 1447
Score = 36.2 bits (82), Expect = 0.25, Method: Composition-based stats.
Identities = 14/32 (43%), Positives = 21/32 (65%)
Query: 70 ILKGNNVKIIWIPSHCGIAGNEEVDKAAQSFI 101
++K V + W+P+H GI GNE+VDK + I
Sbjct: 1124 LIKKEKVYLAWVPAHKGIGGNEQVDKLVSAGI 1155
>sp|Q73368|POL_HV1B9 Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype B (strain 89.6) GN=gag-pol PE=3 SV=3
Length = 1435
Score = 36.2 bits (82), Expect = 0.25, Method: Composition-based stats.
Identities = 14/32 (43%), Positives = 21/32 (65%)
Query: 70 ILKGNNVKIIWIPSHCGIAGNEEVDKAAQSFI 101
++K V + W+P+H GI GNE+VDK + I
Sbjct: 1112 LIKKEKVYLAWVPAHKGIGGNEQVDKLVSAGI 1143
>sp|P04587|POL_HV1B5 Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype B (isolate BH5) GN=gag-pol PE=1 SV=3
Length = 1447
Score = 36.2 bits (82), Expect = 0.25, Method: Composition-based stats.
Identities = 14/32 (43%), Positives = 21/32 (65%)
Query: 70 ILKGNNVKIIWIPSHCGIAGNEEVDKAAQSFI 101
++K V + W+P+H GI GNE+VDK + I
Sbjct: 1124 LIKKEKVYLAWVPAHKGIGGNEQVDKLVSAGI 1155
>sp|P03369|POL_HV1A2 Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype B (isolate ARV2/SF2) GN=gag-pol PE=1 SV=3
Length = 1437
Score = 36.2 bits (82), Expect = 0.25, Method: Composition-based stats.
Identities = 14/32 (43%), Positives = 21/32 (65%)
Query: 70 ILKGNNVKIIWIPSHCGIAGNEEVDKAAQSFI 101
++K V + W+P+H GI GNE+VDK + I
Sbjct: 1114 LIKKEKVYLAWVPAHKGIGGNEQVDKLVSAGI 1145
>sp|P0C6F2|POL_HV1LW Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype B (isolate LW123) GN=gag-pol PE=1 SV=1
Length = 1435
Score = 35.8 bits (81), Expect = 0.25, Method: Composition-based stats.
Identities = 14/32 (43%), Positives = 21/32 (65%)
Query: 70 ILKGNNVKIIWIPSHCGIAGNEEVDKAAQSFI 101
++K V + W+P+H GI GNE+VDK + I
Sbjct: 1112 LIKKEKVYLAWVPAHKGIGGNEQVDKLVSAGI 1143
>sp|P03366|POL_HV1B1 Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype B (isolate BH10) GN=gag-pol PE=1 SV=3
Length = 1447
Score = 35.8 bits (81), Expect = 0.25, Method: Composition-based stats.
Identities = 14/32 (43%), Positives = 21/32 (65%)
Query: 70 ILKGNNVKIIWIPSHCGIAGNEEVDKAAQSFI 101
++K V + W+P+H GI GNE+VDK + I
Sbjct: 1124 LIKKEKVYLAWVPAHKGIGGNEQVDKLVSAGI 1155
>sp|P20892|POL_HV1OY Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype B (isolate OYI) GN=gag-pol PE=3 SV=3
Length = 1434
Score = 35.8 bits (81), Expect = 0.25, Method: Composition-based stats.
Identities = 14/32 (43%), Positives = 21/32 (65%)
Query: 70 ILKGNNVKIIWIPSHCGIAGNEEVDKAAQSFI 101
++K V + W+P+H GI GNE+VDK + I
Sbjct: 1111 LIKKEKVYLAWVPAHKGIGGNEQVDKLVSAGI 1142
>sp|P12499|POL_HV1Z2 Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype D (isolate Z2/CDC-Z34) GN=gag-pol PE=1 SV=3
Length = 1436
Score = 35.8 bits (81), Expect = 0.26, Method: Composition-based stats.
Identities = 13/26 (50%), Positives = 19/26 (73%)
Query: 70 ILKGNNVKIIWIPSHCGIAGNEEVDK 95
++K V + W+P+H GI GNE+VDK
Sbjct: 1113 LIKKEKVYLAWVPAHKGIGGNEQVDK 1138
>sp|P04589|POL_HV1EL Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype D (isolate ELI) GN=gag-pol PE=3 SV=3
Length = 1435
Score = 35.8 bits (81), Expect = 0.26, Method: Composition-based stats.
Identities = 13/26 (50%), Positives = 19/26 (73%)
Query: 70 ILKGNNVKIIWIPSHCGIAGNEEVDK 95
++K V + W+P+H GI GNE+VDK
Sbjct: 1112 LIKKEKVYLAWVPAHKGIGGNEQVDK 1137
>sp|O89290|POL_HV193 Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype F1 (isolate 93BR020) GN=gag-pol PE=3 SV=3
Length = 1430
Score = 35.8 bits (81), Expect = 0.28, Method: Composition-based stats.
Identities = 14/32 (43%), Positives = 21/32 (65%)
Query: 70 ILKGNNVKIIWIPSHCGIAGNEEVDKAAQSFI 101
++K V + W+P+H GI GNE+VDK + I
Sbjct: 1107 LIKKEKVYLSWVPAHKGIGGNEQVDKLVSAGI 1138
>sp|P05895|POL_SIVVT Gag-Pol polyprotein OS=Simian immunodeficiency virus agm.vervet
(isolate AGM TYO-1) GN=gag-pol PE=3 SV=2
Length = 1467
Score = 35.8 bits (81), Expect = 0.30, Method: Composition-based stats.
Identities = 12/27 (44%), Positives = 20/27 (74%)
Query: 69 LILKGNNVKIIWIPSHCGIAGNEEVDK 95
L+++ + + W+P+H GI GNEE+DK
Sbjct: 1140 LMIQKQQIYLQWVPAHKGIGGNEEIDK 1166
>sp|P31822|POL_FIVT2 Pol polyprotein OS=Feline immunodeficiency virus (isolate TM2)
GN=pol PE=3 SV=1
Length = 1124
Score = 35.8 bits (81), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 14/24 (58%), Positives = 17/24 (70%)
Query: 78 IIWIPSHCGIAGNEEVDKAAQSFI 101
I W+P H GI GNEEVDK Q+ +
Sbjct: 687 IDWVPGHKGIPGNEEVDKLCQTMM 710
>sp|Q9QBZ5|POL_HV1MP Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype F2 (isolate MP255) GN=gag-pol PE=3 SV=3
Length = 1430
Score = 35.4 bits (80), Expect = 0.37, Method: Composition-based stats.
Identities = 14/32 (43%), Positives = 21/32 (65%)
Query: 70 ILKGNNVKIIWIPSHCGIAGNEEVDKAAQSFI 101
+++ V + W+P+H GI GNE+VDK S I
Sbjct: 1107 LIQKEKVYLSWVPAHKGIGGNEQVDKLVSSGI 1138
>sp|P24740|POL_HV1U4 Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype A (isolate U455) GN=gag-pol PE=1 SV=3
Length = 1428
Score = 35.4 bits (80), Expect = 0.39, Method: Composition-based stats.
Identities = 18/34 (52%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Query: 68 KLILKGNNVKIIWIPSHCGIAGNEEVDKAAQSFI 101
KLI K V + W+P+H GI GNE+VDK S I
Sbjct: 1104 KLIEK-EKVYLSWVPAHKGIGGNEQVDKLVSSGI 1136
>sp|Q02836|POL_SIVG1 Gag-Pol polyprotein OS=Simian immunodeficiency virus agm.grivet
(isolate AGM gr-1) GN=gag-pol PE=3 SV=2
Length = 1472
Score = 35.4 bits (80), Expect = 0.40, Method: Composition-based stats.
Identities = 25/84 (29%), Positives = 45/84 (53%), Gaps = 13/84 (15%)
Query: 15 AEAFAMEMCLDNLINRPIPDNILIFTDSK---SLISSMQQLFCKNILIHDIQVACHKLIL 71
AE A++M L++ +N+ I TDS+ +++++ Q ++ IQ ++
Sbjct: 1086 AELTAVKMALED-----SGENVNIVTDSQYVMNILTACPQESNSPLVEQIIQA-----LM 1135
Query: 72 KGNNVKIIWIPSHCGIAGNEEVDK 95
K V + W+P+H GI GN E+DK
Sbjct: 1136 KKRQVYLQWVPAHKGIGGNTEIDK 1159
>sp|P17283|POL_SIVCZ Gag-Pol polyprotein OS=Simian immunodeficiency virus (isolate CPZ
GAB1) GN=gag-pol PE=3 SV=2
Length = 1384
Score = 35.0 bits (79), Expect = 0.43, Method: Composition-based stats.
Identities = 13/32 (40%), Positives = 21/32 (65%)
Query: 70 ILKGNNVKIIWIPSHCGIAGNEEVDKAAQSFI 101
++K + + W+P+H GI GNE+VDK + I
Sbjct: 1061 LIKKEKIYLSWVPAHKGIGGNEQVDKLVSAGI 1092
>sp|P05959|POL_HV1RH Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype B (isolate RF/HAT3) GN=gag-pol PE=1 SV=3
Length = 1436
Score = 35.0 bits (79), Expect = 0.46, Method: Composition-based stats.
Identities = 13/32 (40%), Positives = 21/32 (65%)
Query: 70 ILKGNNVKIIWIPSHCGIAGNEEVDKAAQSFI 101
++K V + W+P+H GI GNE+VD+ + I
Sbjct: 1113 LIKKEKVYLAWVPAHKGIGGNEQVDRLVSTGI 1144
>sp|Q9QBY3|POL_HV196 Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype K (isolate 96CM-MP535) GN=gag-pol PE=3 SV=3
Length = 1430
Score = 35.0 bits (79), Expect = 0.50, Method: Composition-based stats.
Identities = 13/32 (40%), Positives = 21/32 (65%)
Query: 70 ILKGNNVKIIWIPSHCGIAGNEEVDKAAQSFI 101
++K + + W+P+H GI GNE+VDK + I
Sbjct: 1107 LIKKERIYLSWVPAHKGIGGNEQVDKLVSAGI 1138
>sp|Q9Q720|POL_HV1V9 Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype H (isolate VI991) GN=gag-pol PE=3 SV=3
Length = 1436
Score = 35.0 bits (79), Expect = 0.51, Method: Composition-based stats.
Identities = 14/32 (43%), Positives = 20/32 (62%)
Query: 70 ILKGNNVKIIWIPSHCGIAGNEEVDKAAQSFI 101
++K + W+P+H GI GNE+VDK S I
Sbjct: 1113 LIKKEKFYLSWVPAHKGIGGNEQVDKLVSSGI 1144
>sp|P27980|POL_SIVVG Gag-Pol polyprotein OS=Simian immunodeficiency virus agm.vervet
(isolate AGM3) GN=gag-pol PE=3 SV=2
Length = 1465
Score = 34.7 bits (78), Expect = 0.57, Method: Composition-based stats.
Identities = 27/83 (32%), Positives = 45/83 (54%), Gaps = 11/83 (13%)
Query: 15 AEAFAMEMCLDNLINRPIPDNILIFTDSKSL--ISSMQQLFCKNILIHDIQVACHKLILK 72
AE A++M L++ + P N+ I TDS+ I + Q + LI I L+++
Sbjct: 1091 AELMAIKMALED--SGP---NVNIVTDSQYAMGILTAQPTQSDSPLIEQIIA----LMVQ 1141
Query: 73 GNNVKIIWIPSHCGIAGNEEVDK 95
+ + + W+P+ GI GNEE+DK
Sbjct: 1142 KHQIYLQWVPADKGIGGNEEIDK 1164
>sp|Q9IDV9|POL_HV1YB Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group N
(isolate YBF106) GN=gag-pol PE=3 SV=3
Length = 1449
Score = 34.7 bits (78), Expect = 0.59, Method: Composition-based stats.
Identities = 14/32 (43%), Positives = 20/32 (62%)
Query: 70 ILKGNNVKIIWIPSHCGIAGNEEVDKAAQSFI 101
++K V + W+P+H GI GNE+VD S I
Sbjct: 1122 LIKKERVYLSWVPAHKGIGGNEQVDXLVSSGI 1153
>sp|Q75002|POL_HV1ET Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype C (isolate ETH2220) GN=gag-pol PE=3 SV=3
Length = 1439
Score = 34.7 bits (78), Expect = 0.62, Method: Composition-based stats.
Identities = 14/32 (43%), Positives = 20/32 (62%)
Query: 70 ILKGNNVKIIWIPSHCGIAGNEEVDKAAQSFI 101
++ V + W+P+H GI GNE+VDK S I
Sbjct: 1116 LISKERVYLSWVPAHKGIGGNEQVDKLVSSGI 1147
>sp|Q1A249|POL_SIVEK Gag-Pol polyprotein OS=Simian immunodeficiency virus (isolate EK505)
GN=gag-pol PE=3 SV=3
Length = 1448
Score = 34.7 bits (78), Expect = 0.63, Method: Composition-based stats.
Identities = 12/32 (37%), Positives = 21/32 (65%)
Query: 70 ILKGNNVKIIWIPSHCGIAGNEEVDKAAQSFI 101
++K + + W+P+H GI GNE++DK + I
Sbjct: 1121 LIKKERIYLSWVPAHKGIGGNEQIDKLVSTGI 1152
>sp|Q8AII1|POL_SIVTN Gag-Pol polyprotein OS=Simian immunodeficiency virus (isolate TAN1)
GN=gag-pol PE=3 SV=4
Length = 1462
Score = 34.7 bits (78), Expect = 0.69, Method: Composition-based stats.
Identities = 22/61 (36%), Positives = 33/61 (54%), Gaps = 8/61 (13%)
Query: 38 IFTDSKSLISSMQQLFCKN---ILIHDIQVACHKLILKGNNVKIIWIPSHCGIAGNEEVD 94
I TDS+ ++ +Q L ++ I+ IQ K + + W+P+H GI GNEEVD
Sbjct: 1109 IVTDSQYVMGVLQGLPDQSDSPIVEQIIQKLTQK-----TAIYLAWVPAHKGIGGNEEVD 1163
Query: 95 K 95
K
Sbjct: 1164 K 1164
>sp|Q9QBZ1|POL_HV1M2 Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype F2 (isolate MP257) GN=gag-pol PE=3 SV=3
Length = 1434
Score = 34.3 bits (77), Expect = 0.75, Method: Composition-based stats.
Identities = 13/32 (40%), Positives = 21/32 (65%)
Query: 70 ILKGNNVKIIWIPSHCGIAGNEEVDKAAQSFI 101
+++ V + W+P+H GI GNE+VDK + I
Sbjct: 1111 LIQKERVYLSWVPAHKGIGGNEQVDKLVSTGI 1142
>sp|Q79666|POL_HV1MV Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group O
(isolate MVP5180) GN=gag-pol PE=3 SV=3
Length = 1446
Score = 34.3 bits (77), Expect = 0.89, Method: Composition-based stats.
Identities = 12/26 (46%), Positives = 18/26 (69%)
Query: 70 ILKGNNVKIIWIPSHCGIAGNEEVDK 95
+ K V + W+P+H GI GNE++DK
Sbjct: 1113 LTKKERVYLTWVPAHKGIGGNEKIDK 1138
>sp|Q77373|POL_HV1AN Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group O
(isolate ANT70) GN=gag-pol PE=3 SV=3
Length = 1435
Score = 34.3 bits (77), Expect = 0.89, Method: Composition-based stats.
Identities = 12/26 (46%), Positives = 18/26 (69%)
Query: 70 ILKGNNVKIIWIPSHCGIAGNEEVDK 95
+ K V + W+P+H GI GNE++DK
Sbjct: 1111 LTKKEQVYLTWVPAHKGIGGNEKIDK 1136
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.136 0.421
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 88,701,596
Number of Sequences: 539616
Number of extensions: 3490284
Number of successful extensions: 8421
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 8325
Number of HSP's gapped (non-prelim): 107
length of query: 244
length of database: 191,569,459
effective HSP length: 114
effective length of query: 130
effective length of database: 130,053,235
effective search space: 16906920550
effective search space used: 16906920550
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 59 (27.3 bits)