Query psy3058
Match_columns 244
No_of_seqs 177 out of 1525
Neff 8.5
Searched_HMMs 29240
Date Sat Aug 17 00:36:53 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3058.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/3058hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3qio_A GAG-POL polyprotein; RN 99.8 4.2E-20 1.4E-24 144.1 9.5 91 8-103 45-147 (150)
2 2qkb_A Ribonuclease H1, HS-RNA 99.8 9.5E-20 3.3E-24 142.7 10.7 98 5-104 43-152 (154)
3 3h08_A RNH (ribonuclease H); R 99.8 1.3E-19 4.5E-24 140.7 9.4 92 9-104 41-145 (146)
4 3p1g_A Xenotropic murine leuke 99.8 2E-19 6.7E-24 142.3 8.2 99 5-107 56-160 (165)
5 1jl1_A Ribonuclease HI; RNAse 99.8 4.7E-19 1.6E-23 139.0 8.6 94 9-106 41-146 (155)
6 2e4l_A Ribonuclease HI, RNAse 99.8 9.3E-19 3.2E-23 137.7 9.2 91 9-103 43-145 (158)
7 2kq2_A Ribonuclease H-related 99.8 8.3E-20 2.9E-24 142.0 0.9 93 9-106 47-140 (147)
8 1ril_A Ribonuclease H; hydrola 99.7 1.3E-18 4.3E-23 138.0 6.3 94 9-106 45-151 (166)
9 2lsn_A Reverse transcriptase; 99.7 1.9E-17 6.6E-22 130.8 8.5 94 8-103 52-163 (165)
10 3hst_B Protein RV2228C/MT2287; 99.7 5.6E-16 1.9E-20 118.9 10.2 91 9-104 43-134 (141)
11 3u3g_D Ribonuclease H, RNAse H 99.6 5.5E-16 1.9E-20 118.6 8.5 91 9-104 42-138 (140)
12 2zd1_A Reverse transcriptase/r 99.6 7.7E-16 2.6E-20 143.5 9.6 84 8-100 472-557 (557)
13 2ehg_A Ribonuclease HI; RNAse 99.6 1.3E-15 4.4E-20 118.3 8.3 91 8-104 44-135 (149)
14 1mu2_A HIV-2 RT; HIV-2 reverse 99.6 1.6E-15 5.5E-20 141.3 10.4 84 9-101 470-555 (555)
15 1zbf_A Ribonuclease H-related 98.8 8.8E-09 3E-13 79.0 5.5 83 9-95 48-139 (142)
16 4htu_A Ribonuclease H, RNAse H 98.3 1.6E-06 5.5E-11 65.4 7.8 42 9-52 42-83 (134)
17 1rw3_A POL polyprotein; RNA an 68.7 1.4 4.9E-05 39.2 1.0 42 9-51 386-427 (455)
18 2lnd_A De novo designed protei 48.7 39 0.0013 22.5 5.0 85 37-122 6-99 (112)
19 3alr_A Nanos protein; zinc-fin 45.1 11 0.00037 26.4 1.9 24 182-205 72-95 (106)
20 2bhu_A Maltooligosyltrehalose 25.9 71 0.0024 29.4 4.7 33 59-91 192-224 (602)
21 2qgp_A HNH endonuclease; Q39X4 23.0 25 0.00084 24.8 0.8 17 181-197 35-56 (112)
22 1wzl_A Alpha-amylase II; pullu 22.9 74 0.0025 29.0 4.2 31 59-89 219-249 (585)
23 1j0h_A Neopullulanase; beta-al 22.4 97 0.0033 28.2 4.9 32 59-90 222-253 (588)
24 2akl_A PHNA-like protein PA012 21.5 46 0.0016 24.3 1.9 27 179-205 25-52 (138)
25 2i0f_A 6,7-dimethyl-8-ribityll 21.3 72 0.0025 24.0 3.1 31 67-99 36-66 (157)
26 1ua7_A Alpha-amylase; beta-alp 20.4 90 0.0031 27.0 4.1 31 59-89 74-104 (422)
27 1ea9_C Cyclomaltodextrinase; h 20.4 72 0.0025 29.0 3.6 31 59-89 218-248 (583)
28 3m07_A Putative alpha amylase; 20.3 1E+02 0.0034 28.5 4.6 34 59-92 202-235 (618)
29 1a6b_B Momulv, zinc finger pro 20.1 73 0.0025 18.0 2.3 23 178-203 7-29 (40)
30 4aef_A Neopullulanase (alpha-a 20.1 1.1E+02 0.0039 28.1 4.9 31 59-89 285-315 (645)
No 1
>3qio_A GAG-POL polyprotein; RNAse H, inhibitor, nuclease, transferase, hydrolase- complex; HET: QID; 1.40A {Hiv-1 M} SCOP: c.55.3.1 PDB: 3qin_A* 3hyf_A* 1o1w_A 3lp3_A* 1hrh_A 3k2p_A* 1rdh_A
Probab=99.82 E-value=4.2e-20 Score=144.14 Aligned_cols=91 Identities=26% Similarity=0.363 Sum_probs=72.4
Q ss_pred CCCChHHHHHHHHHHHHHHhhcCCCCCcEEEEeccHHHHHHHhccc-----------cccHHH-HHHHHHHHHHHhcCCe
Q psy3058 8 SLSSSFTAEAFAMEMCLDNLINRPIPDNILIFTDSKSLISSMQQLF-----------CKNILI-HDIQVACHKLILKGNN 75 (244)
Q Consensus 8 ~~~t~~~AEl~Ai~~al~~~~~~~~~~~i~i~tDs~~al~~l~~~~-----------~~~~~~-~~i~~~~~~l~~~~~~ 75 (244)
..+|++.||+.|++.||+.+ +..|.|+|||++|++.|+++. .+.++. .++++.+..+..++..
T Consensus 45 ~~~Tnn~aEl~A~i~AL~~~-----~~~v~i~tDS~~v~~~i~~w~~~W~~~gw~~~~g~~v~n~~l~~~l~~~l~~~~~ 119 (150)
T 3qio_A 45 TDTTNQKTELQAIYLALQDS-----GLEVNIVTDSQYALGIITQWIHNWKKRGWKTADKKPVKNVDLVNQIIEQLIKKEK 119 (150)
T ss_dssp SSCCHHHHHHHHHHHHHHHS-----CSEEEEEESCHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHTTCSE
T ss_pred CCCCHHHHHHHHHHHHHHhC-----CCcEEEEeCcHHHHHHHHHHHHHHhhcCcCcCcCcccccHHHHHHHHHHHhhcCc
Confidence 36899999999999999985 368999999999999999862 122222 3455555444457889
Q ss_pred EEEEeecCCCCCccchhhchHHHHHhhh
Q psy3058 76 VKIIWIPSHCGIAGNEEVDKAAQSFINA 103 (244)
Q Consensus 76 v~~~Wvp~H~gi~gNe~AD~lAk~a~~~ 103 (244)
|.|.|||||+|++|||.||+||++|+..
T Consensus 120 v~~~wV~gH~g~~~Ne~AD~LA~~a~~~ 147 (150)
T 3qio_A 120 VYLAWVPAHKGIGGNEQVDKLVSAGIRK 147 (150)
T ss_dssp EEEEECCTTSCCHHHHHHHHHHHTTTSC
T ss_pred eEEEEccCcCCChhHHHHHHHHHHHHHH
Confidence 9999999999999999999999999864
No 2
>2qkb_A Ribonuclease H1, HS-RNAse HC, RNAse H1; RNA/DNA hybrid; 2.40A {Homo sapiens} PDB: 2qk9_A 2qkk_A*
Probab=99.81 E-value=9.5e-20 Score=142.73 Aligned_cols=98 Identities=21% Similarity=0.315 Sum_probs=78.5
Q ss_pred cCCCCCChHHHHHHHHHHHHHHhhcCCCCCcEEEEeccHHHHHHHhccc--------c---ccHH-HHHHHHHHHHHHhc
Q psy3058 5 RLNSLSSSFTAEAFAMEMCLDNLINRPIPDNILIFTDSKSLISSMQQLF--------C---KNIL-IHDIQVACHKLILK 72 (244)
Q Consensus 5 ~l~~~~t~~~AEl~Ai~~al~~~~~~~~~~~i~i~tDs~~al~~l~~~~--------~---~~~~-~~~i~~~~~~l~~~ 72 (244)
.|+..+|++.||+.|++.||+.+.+.+ ..+|.|+|||++|++.|.++. . +.++ ...+++.+..+..
T Consensus 43 ~l~~~~tn~~aEl~A~~~aL~~~~~~~-~~~v~i~tDS~~vi~~i~~~~~~w~~~~w~~~~~~~~~n~~l~~~i~~l~~- 120 (154)
T 2qkb_A 43 RLPGRQTNQRAEIHAACKAIEQAKTQN-INKLVLYTNSMFTINGITNWVQGWKKNGWKTSAGKEVINKEDFVALERLTQ- 120 (154)
T ss_dssp ECCSSCCHHHHHHHHHHHHHHHHHHTT-CCEEEEEESCHHHHHHHHTHHHHHHTTTSBCTTSSBCTTHHHHHHHHHHHT-
T ss_pred ecCCCCchHHHHHHHHHHHHHHHHhCC-CceEEEEECcHHHHhhhhhhHHHHHhccccccCCCccccHHHHHHHHHHHc-
Confidence 466678999999999999999997643 468999999999999999842 1 1122 2455555655544
Q ss_pred CCeEEEEeecCCCCCccchhhchHHHHHhhhc
Q psy3058 73 GNNVKIIWIPSHCGIAGNEEVDKAAQSFINAQ 104 (244)
Q Consensus 73 ~~~v~~~Wvp~H~gi~gNe~AD~lAk~a~~~~ 104 (244)
+..|.|.|||||+|++|||.||+|||+|+..+
T Consensus 121 ~~~v~~~~V~~H~g~~~N~~AD~LA~~a~~~~ 152 (154)
T 2qkb_A 121 GMDIQWMHVPGHSGFIGNEEADRLAREGAKQS 152 (154)
T ss_dssp TCEEEEEECCTTSSCHHHHHHHHHHHHHHTCC
T ss_pred CCceEEEEccCCCCCHhHHHHHHHHHHHHHhc
Confidence 56799999999999999999999999998764
No 3
>3h08_A RNH (ribonuclease H); RNAse H, 3D-structure, endonuclease, hydrolase, magnesium, metal-binding; 1.60A {Chlorobaculum tepidum}
Probab=99.80 E-value=1.3e-19 Score=140.66 Aligned_cols=92 Identities=21% Similarity=0.237 Sum_probs=71.1
Q ss_pred CCChHHHHHHHHHHHHHHhhcCCCCCcEEEEeccHHHHHHHhccc------------cccHH-HHHHHHHHHHHHhcCCe
Q psy3058 9 LSSSFTAEAFAMEMCLDNLINRPIPDNILIFTDSKSLISSMQQLF------------CKNIL-IHDIQVACHKLILKGNN 75 (244)
Q Consensus 9 ~~t~~~AEl~Ai~~al~~~~~~~~~~~i~i~tDs~~al~~l~~~~------------~~~~~-~~~i~~~~~~l~~~~~~ 75 (244)
.+|++.||+.|++.||+.+.+ ...|.|+|||++|++.|++.+ .+.++ .+.+++.+..+... ..
T Consensus 41 ~~Tnn~aEl~A~~~AL~~~~~---~~~v~I~tDS~~vi~~i~~~w~~~W~~~~w~~~~~~~v~n~~l~~~~~~~~~~-~~ 116 (146)
T 3h08_A 41 ATTNNRMELMAAIKGLEALKE---PARVQLYSDSAYLVNAMNEGWLKRWVKNGWKTAAKKPVENIDLWQEILKLTTL-HR 116 (146)
T ss_dssp EECHHHHHHHHHHHHHHTCSS---CCEEEEEESCHHHHHHHHSSHHHHHHHTTCC----CCCTTHHHHHHHHHHHHH-SE
T ss_pred CCcHHHHHHHHHHHHHHhcCc---cCcEEEEeChHHHHHHHHHHHHHHHHHCCCccCCCCCcCCHHHHHHHHHHHhh-Cc
Confidence 578999999999999999865 478999999999999999821 11121 13444444444433 47
Q ss_pred EEEEeecCCCCCccchhhchHHHHHhhhc
Q psy3058 76 VKIIWIPSHCGIAGNEEVDKAAQSFINAQ 104 (244)
Q Consensus 76 v~~~Wvp~H~gi~gNe~AD~lAk~a~~~~ 104 (244)
|.|.|||||+|++|||.||+|||+|+...
T Consensus 117 v~~~~V~gH~g~~~N~~AD~LA~~a~~~~ 145 (146)
T 3h08_A 117 VTFHKVKGHSDNPYNSRADELARLAIKEN 145 (146)
T ss_dssp EEEEECCC-CCSHHHHHHHHHHHHHHHHC
T ss_pred eEEEEcCCcCCcHhHHHHHHHHHHHHHhC
Confidence 99999999999999999999999998764
No 4
>3p1g_A Xenotropic murine leukemia virus-related virus (X H domain; XMRV, RNAse H, reverse transcriptase, transcription; 1.50A {Xenotropic mulv-related virus} PDB: 3v1q_A 3v1o_A 3v1r_A* 2hb5_A 4e89_A
Probab=99.79 E-value=2e-19 Score=142.34 Aligned_cols=99 Identities=20% Similarity=0.192 Sum_probs=75.6
Q ss_pred cCCCCCChHHHHHHHHHHHHHHhhcCCCCCcEEEEeccHHHHHHHhccccccHHH-HHHHHHHHHHHhcCCeEEEEeecC
Q psy3058 5 RLNSLSSSFTAEAFAMEMCLDNLINRPIPDNILIFTDSKSLISSMQQLFCKNILI-HDIQVACHKLILKGNNVKIIWIPS 83 (244)
Q Consensus 5 ~l~~~~t~~~AEl~Ai~~al~~~~~~~~~~~i~i~tDs~~al~~l~~~~~~~~~~-~~i~~~~~~l~~~~~~v~~~Wvp~ 83 (244)
.++..+|++.||+.|+..||+.+ + ...|.|+|||++|++.+-....++++. .+++..+......+..|.|.||||
T Consensus 56 ~~~~~~Tnn~aEl~Ai~~AL~~~-~---~~~v~I~tDS~~vi~~iw~~~~g~~v~n~dl~~~l~~~l~~~~~v~~~wVkg 131 (165)
T 3p1g_A 56 ALPAGTSAQRAELIALTQALKMA-E---GKKLNVYTDSRYAFATAHVHSEGREIKNKNEILALLKALFLPKRLSIIHCPG 131 (165)
T ss_dssp EECTTCCHHHHHHHHHHHHHHHT-B---TSEEEEEECCHHHHHHHHSCCCSCCCSSHHHHHHHHHHTTSBSEEEEEECCS
T ss_pred cCCCCCcHHHHHHHHHHHHHHHc-c---CceEEEEEchHHHHhhhhcccCCCcccCHHHHHHHHHHHhcCCceEEEEecC
Confidence 35567899999999999999998 2 478999999999999993222233321 233333322224678999999999
Q ss_pred CCC-----CccchhhchHHHHHhhhcCCC
Q psy3058 84 HCG-----IAGNEEVDKAAQSFINAQNYS 107 (244)
Q Consensus 84 H~g-----i~gNe~AD~lAk~a~~~~~~~ 107 (244)
|+| ++|||.||+|||+|+..+..+
T Consensus 132 H~g~~~~~~~gNe~AD~LA~~aa~~~~~~ 160 (165)
T 3p1g_A 132 HQKGNSAEARGNRMADQAAREAAMKAVLE 160 (165)
T ss_dssp SCCSCSHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCcCcchHHHHHHHHHHHHHhcCCCc
Confidence 999 999999999999999876543
No 5
>1jl1_A Ribonuclease HI; RNAse HI, protein stability, thermostability, hydrogen exchange, cooperativity, hydrolase; 1.30A {Escherichia coli} SCOP: c.55.3.1 PDB: 1f21_A 1jxb_A 1g15_A 1rch_A 1rdd_A 1rnh_A* 2rn2_A 1rda_A 1law_A 1rdb_A 1lav_A 3aa4_A 1rbu_A 1gob_A 1rdc_A 1kvc_A 3aa3_A 3aa2_A 3aa5_X 1rbv_A ...
Probab=99.78 E-value=4.7e-19 Score=138.98 Aligned_cols=94 Identities=19% Similarity=0.256 Sum_probs=75.6
Q ss_pred CCChHHHHHHHHHHHHHHhhcCCCCCcEEEEeccHHHHHHHhcc--------cc---ccHHH-HHHHHHHHHHHhcCCeE
Q psy3058 9 LSSSFTAEAFAMEMCLDNLINRPIPDNILIFTDSKSLISSMQQL--------FC---KNILI-HDIQVACHKLILKGNNV 76 (244)
Q Consensus 9 ~~t~~~AEl~Ai~~al~~~~~~~~~~~i~i~tDs~~al~~l~~~--------~~---~~~~~-~~i~~~~~~l~~~~~~v 76 (244)
.+|++.||+.|+..||+.+.+ ..+|.|+|||++|++.|.++ +. +.++. ..+++.+..+.. ...|
T Consensus 41 ~~tn~~aEl~A~~~aL~~~~~---~~~v~I~tDS~~vi~~i~~w~~~W~~n~~~~~~g~~v~n~~l~~~i~~l~~-~~~v 116 (155)
T 1jl1_A 41 RTTNNRMELMAAIVALEALKE---HAEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALG-QHQI 116 (155)
T ss_dssp EECHHHHHHHHHHHHHHTCCS---CCEEEEEECCHHHHHHHHTTHHHHHHTTTBCTTSCBCTTHHHHHHHHHHTT-TCEE
T ss_pred CCcHHHHHHHHHHHHHHHhCc---CCcEEEEeCHHHHHHHHHHHHHHHhhcccccccCCccCCHHHHHHHHHHHc-cCce
Confidence 578999999999999999865 36899999999999999972 11 22221 345555555544 4689
Q ss_pred EEEeecCCCCCccchhhchHHHHHhhhcCC
Q psy3058 77 KIIWIPSHCGIAGNEEVDKAAQSFINAQNY 106 (244)
Q Consensus 77 ~~~Wvp~H~gi~gNe~AD~lAk~a~~~~~~ 106 (244)
.|.|||||+|++||+.||+|||+|+..+..
T Consensus 117 ~~~wV~gH~g~~~Ne~AD~LA~~a~~~~~~ 146 (155)
T 1jl1_A 117 KWEWVKGHAGHPENERADELARAAAMNPTL 146 (155)
T ss_dssp EEEECCSSTTCHHHHHHHHHHHHHHHSCCB
T ss_pred EEEEcCCCCCCHHHHHHHHHHHHHHhccch
Confidence 999999999999999999999999987654
No 6
>2e4l_A Ribonuclease HI, RNAse HI; hydrolase, endoribonuclease; 2.00A {Shewanella oneidensis} PDB: 2zqb_A
Probab=99.77 E-value=9.3e-19 Score=137.70 Aligned_cols=91 Identities=22% Similarity=0.300 Sum_probs=73.3
Q ss_pred CCChHHHHHHHHHHHHHHhhcCCCCCcEEEEeccHHHHHHHhc--------ccc---ccHH-HHHHHHHHHHHHhcCCeE
Q psy3058 9 LSSSFTAEAFAMEMCLDNLINRPIPDNILIFTDSKSLISSMQQ--------LFC---KNIL-IHDIQVACHKLILKGNNV 76 (244)
Q Consensus 9 ~~t~~~AEl~Ai~~al~~~~~~~~~~~i~i~tDs~~al~~l~~--------~~~---~~~~-~~~i~~~~~~l~~~~~~v 76 (244)
.+|++.||+.|+..||+.+.+ +..|.|+|||++|++.|.+ .+. +.++ -..++..+..+.. +..|
T Consensus 43 ~~tn~~aEl~A~~~AL~~~~~---~~~v~I~tDS~~vi~~i~~w~~~W~~n~~~~~~g~~v~n~~l~~~i~~l~~-~~~v 118 (158)
T 2e4l_A 43 LTTNNRMELLAPIVALEALKE---PCKIILTSDSQYMRQGIMTWIHGWKKKGWMTSNRTPVKNVDLWKRLDKAAQ-LHQI 118 (158)
T ss_dssp EECHHHHHHHHHHHHHHTCSS---CCEEEEEECCHHHHHHHHTHHHHHHHTTTBCTTSSBCTTHHHHHHHHHHHT-TSEE
T ss_pred CCccHHHHHHHHHHHHHHhcc---CCeEEEEeCHHHHHHHHHHHHHHHHHccccccCCCcccCHHHHHHHHHHHc-cCcE
Confidence 478999999999999998854 2789999999999999998 221 1222 1344555555544 4699
Q ss_pred EEEeecCCCCCccchhhchHHHHHhhh
Q psy3058 77 KIIWIPSHCGIAGNEEVDKAAQSFINA 103 (244)
Q Consensus 77 ~~~Wvp~H~gi~gNe~AD~lAk~a~~~ 103 (244)
.|.|||||+|++||+.||+|||+|+..
T Consensus 119 ~~~wV~gH~g~~~Ne~AD~LAk~a~~~ 145 (158)
T 2e4l_A 119 DWRWVKGHAGHAENERCDQLARAAAEA 145 (158)
T ss_dssp EEEECCTTCCCHHHHHHHHHHHHHHHS
T ss_pred EEEEccCCCCchhHHHHHHHHHHHHHh
Confidence 999999999999999999999999987
No 7
>2kq2_A Ribonuclease H-related protein; PSI, NESG, protein structure, APO enzyme, structural genomics, protein structure initiative; NMR {Desulfitobacterium hafniense dcb-2} PDB: 2kw4_A
Probab=99.75 E-value=8.3e-20 Score=142.03 Aligned_cols=93 Identities=14% Similarity=0.059 Sum_probs=74.2
Q ss_pred CCChHHHHHHHHHHHHHHhhcCCCCCcEEEEeccHHHHHHHhccccc-cHHHHHHHHHHHHHHhcCCeEEEEeecCCCCC
Q psy3058 9 LSSSFTAEAFAMEMCLDNLINRPIPDNILIFTDSKSLISSMQQLFCK-NILIHDIQVACHKLILKGNNVKIIWIPSHCGI 87 (244)
Q Consensus 9 ~~t~~~AEl~Ai~~al~~~~~~~~~~~i~i~tDs~~al~~l~~~~~~-~~~~~~i~~~~~~l~~~~~~v~~~Wvp~H~gi 87 (244)
.+||+.||+.|+..||+.+.+.+. +|.|+|||+.+.+.+.+.+.. ........+.+.+|.. .|.|.|||||+|+
T Consensus 47 ~~tNn~aEl~A~~~AL~~a~~~~~--~v~I~tDS~~i~~w~~~~w~~~~~~~~~~~~l~~~l~~---~v~~~wV~gH~g~ 121 (147)
T 2kq2_A 47 TMRNVAGEIAAALYAVKKASQLGV--KIRILHDYAGIAFWATGEWKAKNEFTQAYAKLMNQYRG---IYSFEKVKAHSGN 121 (147)
T ss_dssp GTCTTHHHHHHHHHHHHHHHHHTC--CCCBSSCCSTHHHHTTSSSSCCHHHHHHHHCGGGGGST---TCCBCCCCCCCCC
T ss_pred cccHHHHHHHHHHHHHHHHHHCCC--eEEEEECcHHHHHHHhCCCccCCcchHHHHHHHHHhcC---CeeEEEecCcCCC
Confidence 369999999999999998876543 799999999998888776543 2333444455554432 8999999999999
Q ss_pred ccchhhchHHHHHhhhcCC
Q psy3058 88 AGNEEVDKAAQSFINAQNY 106 (244)
Q Consensus 88 ~gNe~AD~lAk~a~~~~~~ 106 (244)
+|||.||+|||+|+.....
T Consensus 122 ~~Ne~AD~LA~~a~~~~~~ 140 (147)
T 2kq2_A 122 EFNDYVDMKAKSALGIRDL 140 (147)
T ss_dssp HHHHHHHHHHHHHHTCCCT
T ss_pred cchHHHHHHHHHHHhcccc
Confidence 9999999999999987653
No 8
>1ril_A Ribonuclease H; hydrolase(endoribonuclease); 2.80A {Thermus thermophilus} SCOP: c.55.3.1 PDB: 2rpi_A
Probab=99.74 E-value=1.3e-18 Score=138.00 Aligned_cols=94 Identities=21% Similarity=0.236 Sum_probs=74.6
Q ss_pred CCChHHHHHHHHHHHHHHhhcCCCCCcEEEEeccHHHHHHHhc-c--------cc---ccHHH-HHHHHHHHHHHhcCCe
Q psy3058 9 LSSSFTAEAFAMEMCLDNLINRPIPDNILIFTDSKSLISSMQQ-L--------FC---KNILI-HDIQVACHKLILKGNN 75 (244)
Q Consensus 9 ~~t~~~AEl~Ai~~al~~~~~~~~~~~i~i~tDs~~al~~l~~-~--------~~---~~~~~-~~i~~~~~~l~~~~~~ 75 (244)
.+|++.||+.|++.||+.+.+ ...|.|+|||++|++.|.+ + +. +.++. ..++..+..+.. ...
T Consensus 45 ~~Tnn~aEl~Ai~~AL~~~~~---~~~v~I~tDS~~vi~~i~~~w~~~W~~~~w~~~~g~~v~n~~l~~~i~~l~~-~~~ 120 (166)
T 1ril_A 45 CTTNNRMELKAAIEGLKALKE---PCEVDLYTDSHYLKKAFTEGWLEGWRKRGWRTAEGKPVKNRDLWEALLLAMA-PHR 120 (166)
T ss_dssp EECHHHHHHHHHHHHHHSCCS---CCEEEEECCCHHHHHHHHSSHHHHHHHTTSBCTTSSBCTTHHHHHHHHHHHT-TSE
T ss_pred CCcHHHHHHHHHHHHHHHhcc---CCeEEEEeChHHHHHHHhhhHHHHHHhcccccccCCccCcHHHHHHHHHHHh-cCe
Confidence 568999999999999998854 2589999999999999998 2 21 12221 345555555544 359
Q ss_pred EEEEeecCCCCCccchhhchHHHHHhhhcCC
Q psy3058 76 VKIIWIPSHCGIAGNEEVDKAAQSFINAQNY 106 (244)
Q Consensus 76 v~~~Wvp~H~gi~gNe~AD~lAk~a~~~~~~ 106 (244)
|.|.|||||+|++||+.||+|||+|+.....
T Consensus 121 v~~~wV~gH~g~~~Ne~AD~LAk~a~~~~~~ 151 (166)
T 1ril_A 121 VRFHFVKGHTGHPENERVDREARRQAQSQAK 151 (166)
T ss_dssp EECCCCCGGGSCTHHHHHHHHHHHHHTSSCC
T ss_pred EEEEEeeCCCCchhHHHHHHHHHHHHHHhhc
Confidence 9999999999999999999999999987653
No 9
>2lsn_A Reverse transcriptase; RNAse H, viral protein; NMR {Simian foamy virus}
Probab=99.71 E-value=1.9e-17 Score=130.76 Aligned_cols=94 Identities=20% Similarity=0.136 Sum_probs=72.7
Q ss_pred CCCChHHHHHHHHHHHHHHhhcCCCCCcEEEEeccHHHHHHHhccc-----------cccHHH-HHHHHHHHHHHhcCCe
Q psy3058 8 SLSSSFTAEAFAMEMCLDNLINRPIPDNILIFTDSKSLISSMQQLF-----------CKNILI-HDIQVACHKLILKGNN 75 (244)
Q Consensus 8 ~~~t~~~AEl~Ai~~al~~~~~~~~~~~i~i~tDs~~al~~l~~~~-----------~~~~~~-~~i~~~~~~l~~~~~~ 75 (244)
...+++.||+.|+..||+.+++. +..|.|+|||++|++.|+.+. .+.++. .++++.+.++......
T Consensus 52 nn~te~~Aei~Al~~al~~al~~--~~~v~I~TDS~Yvi~~it~w~~~Wk~ngw~~~~~~pVkN~dL~~~l~~~~~~~~~ 129 (165)
T 2lsn_A 52 GNHTAQMAEIAAVEFACKKALKI--PGPVLVITDSFYVAESANKELPYWKSNGFVNNKKKPLKHISKWKSIAECLSMKPD 129 (165)
T ss_dssp SSCCHHHHHHHHHHHHHHHHHHS--SSCEEEEESCHHHHHHHHTHHHHHHHTTSCSCSSSCCSSHHHHHHHHHHHHHCTT
T ss_pred hHHHHHHHHHHHHHHHHHHHhcC--CCeEEEEeChHHHHhhhhhhhhhheeccccccCCCcccCHHHHHHHHHHHhCCCC
Confidence 45788899999999999988764 357999999999999998631 122322 3455555555555678
Q ss_pred EEEEeecCCCCC------ccchhhchHHHHHhhh
Q psy3058 76 VKIIWIPSHCGI------AGNEEVDKAAQSFINA 103 (244)
Q Consensus 76 v~~~Wvp~H~gi------~gNe~AD~lAk~a~~~ 103 (244)
|.|.|||||+|+ +|||.||+||++|+..
T Consensus 130 v~~~~VkgH~g~~~~~~~~gNe~AD~LA~~gA~~ 163 (165)
T 2lsn_A 130 ITIQHEKGHQPTNTSIHTEGNALADKLATQGSYV 163 (165)
T ss_dssp CEEEECCSSSCSSSCHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEeCCCCccCCCCChHHHHHHHHHHHhhhh
Confidence 999999999995 5899999999999854
No 10
>3hst_B Protein RV2228C/MT2287; ribonuclease H1, RV2228C N-terminal domain, fusion protein, maltose binding protein, HYDR; HET: MLR TAR; 2.25A {Mycobacterium tuberculosis}
Probab=99.65 E-value=5.6e-16 Score=118.93 Aligned_cols=91 Identities=20% Similarity=0.260 Sum_probs=77.6
Q ss_pred CCChHHHHHHHHHHHHHHhhcCCCCCcEEEEeccHHHHHHHhcccc-ccHHHHHHHHHHHHHHhcCCeEEEEeecCCCCC
Q psy3058 9 LSSSFTAEAFAMEMCLDNLINRPIPDNILIFTDSKSLISSMQQLFC-KNILIHDIQVACHKLILKGNNVKIIWIPSHCGI 87 (244)
Q Consensus 9 ~~t~~~AEl~Ai~~al~~~~~~~~~~~i~i~tDs~~al~~l~~~~~-~~~~~~~i~~~~~~l~~~~~~v~~~Wvp~H~gi 87 (244)
.+|++.||+.|++.||+.+.+.+ .++|.|+|||+++++.+++.+. ..+.+..++..+..+..++..|.|.|||+
T Consensus 43 ~~tn~~aEl~A~~~aL~~a~~~~-~~~v~i~tDS~~vv~~i~~~~~~~~~~l~~~~~~i~~l~~~~~~v~~~~V~~---- 117 (141)
T 3hst_B 43 RATNNVAEYRGLIAGLDDAVKLG-ATEAAVLMDSKLVVEQMSGRWKVKHPDLLKLYVQAQALASQFRRINYEWVPR---- 117 (141)
T ss_dssp EECHHHHHHHHHHHHHHHHHHHT-CSEEEEEESCHHHHHHHTTSSCCCSHHHHHHHHHHHHHHTTSSEEEEEECCG----
T ss_pred CCchHHHHHHHHHHHHHHHHHCC-CceEEEEeChHHHHHHHhCCcccCCHHHHHHHHHHHHHHhcCCeEEEEEcCC----
Confidence 67999999999999999998754 3689999999999999999753 44556667777777877789999999994
Q ss_pred ccchhhchHHHHHhhhc
Q psy3058 88 AGNEEVDKAAQSFINAQ 104 (244)
Q Consensus 88 ~gNe~AD~lAk~a~~~~ 104 (244)
++|+.||+|||+|....
T Consensus 118 ~~N~~AD~LA~~a~~~~ 134 (141)
T 3hst_B 118 ARNTYADRLANDAMDAA 134 (141)
T ss_dssp GGCHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHh
Confidence 89999999999998764
No 11
>3u3g_D Ribonuclease H, RNAse H1; hydrolase, cleave the RNA strand of RNA/DNA hybrid; 1.40A {Uncultured organism}
Probab=99.64 E-value=5.5e-16 Score=118.63 Aligned_cols=91 Identities=18% Similarity=0.204 Sum_probs=74.1
Q ss_pred CCChHHHHHHHHHHHHHHhhcCCCCC----cEEEEeccHHHHHHHhcccc-ccHHHHHHHHHHHHH-HhcCCeEEEEeec
Q psy3058 9 LSSSFTAEAFAMEMCLDNLINRPIPD----NILIFTDSKSLISSMQQLFC-KNILIHDIQVACHKL-ILKGNNVKIIWIP 82 (244)
Q Consensus 9 ~~t~~~AEl~Ai~~al~~~~~~~~~~----~i~i~tDs~~al~~l~~~~~-~~~~~~~i~~~~~~l-~~~~~~v~~~Wvp 82 (244)
.+|++.||+.|+..||+.+.+.+ .+ +|.|+|||++|++.+++.+. ..+.+..++..+..+ ..+...|.|.|||
T Consensus 42 ~~tn~~aEl~A~~~aL~~a~~~~-~~~~~~~v~i~tDS~~vi~~i~~~~~~~~~~l~~~~~~i~~l~~~~~~~v~~~~V~ 120 (140)
T 3u3g_D 42 ETTNNVAEYEALIRALEDLQMFG-DKLVDMEVEVRMDSELIVRQMQGVYKVKEPTLKEKFAKIAHIKMERVPNLVFVHIP 120 (140)
T ss_dssp EECHHHHHHHHHHHHHHHHGGGG-GGGTTCEEEEEESCHHHHHHHTTSSCCCCGGGHHHHHHHHHHHHHHCTTCEEEECC
T ss_pred CCchHHHHHHHHHHHHHHHHHcC-CCCCCceEEEEeChHHHHHHhCCCcccCCHHHHHHHHHHHHHhhcCCCcEEEEEcC
Confidence 46999999999999999997643 23 89999999999999999764 334344555666666 6666799999999
Q ss_pred CCCCCccchhhchHHHHHhhhc
Q psy3058 83 SHCGIAGNEEVDKAAQSFINAQ 104 (244)
Q Consensus 83 ~H~gi~gNe~AD~lAk~a~~~~ 104 (244)
.++|+.||+|||+|+...
T Consensus 121 ----~~~N~~AD~LA~~a~~~~ 138 (140)
T 3u3g_D 121 ----REKNARADELVNEAIDKA 138 (140)
T ss_dssp ----GGGGHHHHHHHHHHHHHH
T ss_pred ----chhhHHHHHHHHHHHHhc
Confidence 589999999999998753
No 12
>2zd1_A Reverse transcriptase/ribonuclease H; P51/P66, hetero dimer, NNRTI, nonnucleoside inhibitor, AIDS, HIV, rilpivirine, diarylpyrimidine, DAPY, DNA recombination; HET: T27; 1.80A {Human immunodeficiency virus 1} PDB: 3is9_A* 3irx_A* 2ze2_A* 3bgr_A* 3qlh_A* 3klf_A* 3qo9_A* 1dlo_A 1bqm_A 2be2_A* 1s6q_A* 1s6p_A* 1s9g_A* 1suq_A* 2b5j_A* 2b6a_A* 2ban_A* 1s9e_A* 1hni_A* 1hnv_A* ...
Probab=99.62 E-value=7.7e-16 Score=143.52 Aligned_cols=84 Identities=27% Similarity=0.379 Sum_probs=68.6
Q ss_pred CCCChHHHHHHHHHHHHHHhhcCCCCCcEEEEeccHHHHHHHhcccc--ccHHHHHHHHHHHHHHhcCCeEEEEeecCCC
Q psy3058 8 SLSSSFTAEAFAMEMCLDNLINRPIPDNILIFTDSKSLISSMQQLFC--KNILIHDIQVACHKLILKGNNVKIIWIPSHC 85 (244)
Q Consensus 8 ~~~t~~~AEl~Ai~~al~~~~~~~~~~~i~i~tDs~~al~~l~~~~~--~~~~~~~i~~~~~~l~~~~~~v~~~Wvp~H~ 85 (244)
..+||+.||+.|++.||+.+ ...|.|+|||++|++.|+++.. .+++..++.+.+ .....|.|.|||||+
T Consensus 472 ~~~TNn~aEl~Ai~~aL~~~-----~~~v~I~tDS~~vi~~i~~~~~~~~~~l~~~~~~~l----~~~~~v~~~wV~~H~ 542 (557)
T 2zd1_A 472 TNTTNQKTELQAIYLALQDS-----GLEVNIVTDSQYALGIIQAQPDKSESELVNQIIEQL----IKKEKVYLAWVPAHK 542 (557)
T ss_dssp CSCCHHHHHHHHHHHHHHHS-----CSEEEEEECCHHHHHHHTTCCSEESSHHHHHHHHHH----HHCSEEEEEECCSSS
T ss_pred CCCCHHHHHHHHHHHHHHhC-----CCcEEEEeChHHHHHHHhcCCccCCHHHHHHHHHHH----hcCCCEEEEEcCCCC
Confidence 36899999999999999998 3689999999999999999753 356666555433 235689999999999
Q ss_pred CCccchhhchHHHHH
Q psy3058 86 GIAGNEEVDKAAQSF 100 (244)
Q Consensus 86 gi~gNe~AD~lAk~a 100 (244)
|++|||.||+|||+|
T Consensus 543 g~~~Ne~AD~LA~~a 557 (557)
T 2zd1_A 543 GIGGNEQVDKLVSAG 557 (557)
T ss_dssp CCTTCCGGGGCC---
T ss_pred CChhHHHHHHHHhcC
Confidence 999999999999986
No 13
>2ehg_A Ribonuclease HI; RNAse HI, hyperthermophilic archaeon, D stranded RNA-dependent RNAse, hydrolase; 1.60A {Sulfolobus tokodaii} PDB: 3aly_A
Probab=99.61 E-value=1.3e-15 Score=118.31 Aligned_cols=91 Identities=21% Similarity=0.227 Sum_probs=73.2
Q ss_pred CCCChHHHHHHHHHHHHHHhhcCCCCCcEEEEeccHHHHHHHhcccc-ccHHHHHHHHHHHHHHhcCCeEEEEeecCCCC
Q psy3058 8 SLSSSFTAEAFAMEMCLDNLINRPIPDNILIFTDSKSLISSMQQLFC-KNILIHDIQVACHKLILKGNNVKIIWIPSHCG 86 (244)
Q Consensus 8 ~~~t~~~AEl~Ai~~al~~~~~~~~~~~i~i~tDs~~al~~l~~~~~-~~~~~~~i~~~~~~l~~~~~~v~~~Wvp~H~g 86 (244)
..+|++.||+.|+..||+.+.+.+ .++|.|+|||++|++.+++++. ..+....+++.+..+..+. .|.|.|||+
T Consensus 44 ~~~tnn~aEl~A~~~aL~~a~~~g-~~~v~i~tDS~~vi~~i~~~w~~~~~~~~~l~~~i~~l~~~~-~v~~~~V~~--- 118 (149)
T 2ehg_A 44 INSTNNVAEYSGLICLMETMLRLG-ISSPIIKGDSQLVIKQMNGEYKVKAKRIIPLYEKAIELKKKL-NATLIWVPR--- 118 (149)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHHHT-CCSCEEEESCHHHHHHHTTSSCCCCTTHHHHHHHHHHHHHHH-TCEEEECCG---
T ss_pred CCccHHHHHHHHHHHHHHHHHHcC-CCEEEEEeChHHHHHHHhCccccCCHHHHHHHHHHHHHHhcC-CEEEEEcCC---
Confidence 478999999999999999998754 3679999999999999999764 2233455555555555544 599999998
Q ss_pred CccchhhchHHHHHhhhc
Q psy3058 87 IAGNEEVDKAAQSFINAQ 104 (244)
Q Consensus 87 i~gNe~AD~lAk~a~~~~ 104 (244)
++|+.||+|||+|+...
T Consensus 119 -~~N~~AD~LA~~a~~~~ 135 (149)
T 2ehg_A 119 -EENKEADRLSRVAYELV 135 (149)
T ss_dssp -GGCHHHHHHHHHHHHHH
T ss_pred -cccHHHHHHHHHHHHhh
Confidence 59999999999998764
No 14
>1mu2_A HIV-2 RT; HIV-2 reverse transcriptase, AIDS, polymerase, drug design, transferase; 2.35A {Human immunodeficiency virus 2} SCOP: c.55.3.1 e.8.1.2 PDB: 1mu2_B
Probab=99.61 E-value=1.6e-15 Score=141.33 Aligned_cols=84 Identities=25% Similarity=0.406 Sum_probs=70.5
Q ss_pred CCChHHHHHHHHHHHHHHhhcCCCCCcEEEEeccHHHHHHHhccc--cccHHHHHHHHHHHHHHhcCCeEEEEeecCCCC
Q psy3058 9 LSSSFTAEAFAMEMCLDNLINRPIPDNILIFTDSKSLISSMQQLF--CKNILIHDIQVACHKLILKGNNVKIIWIPSHCG 86 (244)
Q Consensus 9 ~~t~~~AEl~Ai~~al~~~~~~~~~~~i~i~tDs~~al~~l~~~~--~~~~~~~~i~~~~~~l~~~~~~v~~~Wvp~H~g 86 (244)
.+||+.||+.|++.||+. ....+.|+|||++|++.++++. +..++.+.+.+.+ ..+..|.|.|||||+|
T Consensus 470 ~~TNn~aEl~A~i~aL~~-----~~~~v~I~tDS~~v~~~i~~~~~~~~~~l~~~~~~~~----~~~~~v~~~wV~~H~g 540 (555)
T 1mu2_A 470 QTTNQQAELEAFAMALTD-----SGPKVNIIVDSQYVMGIVASQPTESESKIVNQIIEEM----IKKEAIYVAWVPAHKG 540 (555)
T ss_dssp SCCHHHHHHHHHHHHHHT-----SCSEEEEEESCHHHHHHHHTCCSEESCHHHHHHHHHH----HHCSEEEEEECCSSSC
T ss_pred CCCHHHHHHHHHHHHHHc-----CCCeEEEEEehHHHHHHHhcccccccHHHHHHHHHHh----ccCCcEEEEEEECCCC
Confidence 679999999999999997 2468999999999999999864 3456666554433 3467899999999999
Q ss_pred CccchhhchHHHHHh
Q psy3058 87 IAGNEEVDKAAQSFI 101 (244)
Q Consensus 87 i~gNe~AD~lAk~a~ 101 (244)
++|||.||+|||+|+
T Consensus 541 ~~~Ne~AD~LA~~a~ 555 (555)
T 1mu2_A 541 IGGNQEVDHLVSQGI 555 (555)
T ss_dssp CTTHHHHHHHHHTTC
T ss_pred ChhHHHHHHHHHhhC
Confidence 999999999999874
No 15
>1zbf_A Ribonuclease H-related protein; RNAse H, RNA/DNA hybrid, DDE motif, hydrolase; 1.50A {Bacillus halodurans} SCOP: c.55.3.1 PDB: 1zbi_A 2g8u_A 2g8i_A 2g8h_A 2g8k_A 2g8f_A 2g8v_A 2g8w_A 3ey1_A* 1zbl_A 3d0p_A* 3i8d_A* 2r7y_A*
Probab=98.75 E-value=8.8e-09 Score=78.97 Aligned_cols=83 Identities=14% Similarity=0.088 Sum_probs=61.6
Q ss_pred CCChHHHHHHHHHHHHHHhhcCCCCCcEEEEeccHHHHHHHhcccc----c-----cHHHHHHHHHHHHHHhcCCeEEEE
Q psy3058 9 LSSSFTAEAFAMEMCLDNLINRPIPDNILIFTDSKSLISSMQQLFC----K-----NILIHDIQVACHKLILKGNNVKII 79 (244)
Q Consensus 9 ~~t~~~AEl~Ai~~al~~~~~~~~~~~i~i~tDs~~al~~l~~~~~----~-----~~~~~~i~~~~~~l~~~~~~v~~~ 79 (244)
.+|++.||+.|++.||+.+.+... .|.|+|||++|++.+.+.+. + .++.+.+.....-+.. ..++..
T Consensus 48 ~~TNN~aEl~A~i~aL~~~~~~~~--~v~i~tDS~~vi~w~~~~~~k~~~~~~v~n~dLw~~l~~~~~w~~~--~~~~~~ 123 (142)
T 1zbf_A 48 IGTNNMGEFLAIVHGLRYLKERNS--RKPIYSNSQTAIKWVKDKKAKSTLVRNEETALIWKLVDEAEEWLNT--HTYETP 123 (142)
T ss_dssp EECHHHHHHHHHHHHHHHHHHTTC--CCCEEESCHHHHHHHHHTCCCCCCCCSTTTHHHHHHHHHHHHHHHH--CCCCCC
T ss_pred CcCcHHHHHHHHHHHHHHHHhCCC--eEEEEEehHHHHHHHHcCCccCCCCCCcccHHHHHHHHHHHHHHhh--CCCcee
Confidence 578999999999999999987543 79999999999999998762 1 1344444333333333 345556
Q ss_pred eecCCCCCccchhhch
Q psy3058 80 WIPSHCGIAGNEEVDK 95 (244)
Q Consensus 80 Wvp~H~gi~gNe~AD~ 95 (244)
.|.-|++.-||..||.
T Consensus 124 ~~kw~~~~~ge~pad~ 139 (142)
T 1zbf_A 124 ILKWQTDKWGEIKADY 139 (142)
T ss_dssp EEECCHHHHCSCTTCC
T ss_pred EEEeccCccCcCcccc
Confidence 6777999999999995
No 16
>4htu_A Ribonuclease H, RNAse H; 5-chloro-2'-deoxyuridine, W-C base PAIR, wobble base PAIR, D helix; HET: DNA UCL; 1.49A {Bacillus halodurans} PDB: 3d0p_A* 4hue_A* 4huf_A* 4hug_A* 1zbf_A 1zbi_A 2g8u_A 3uld_A* 3ey1_A* 3twh_A* 2g8f_A 2g8v_A 2g8w_A 2g8i_A 2g8h_A 2g8k_A 3i8d_A* 2r7y_A* 1zbl_A
Probab=98.33 E-value=1.6e-06 Score=65.38 Aligned_cols=42 Identities=19% Similarity=0.241 Sum_probs=37.0
Q ss_pred CCChHHHHHHHHHHHHHHhhcCCCCCcEEEEeccHHHHHHHhcc
Q psy3058 9 LSSSFTAEAFAMEMCLDNLINRPIPDNILIFTDSKSLISSMQQL 52 (244)
Q Consensus 9 ~~t~~~AEl~Ai~~al~~~~~~~~~~~i~i~tDs~~al~~l~~~ 52 (244)
.+||+.||++|++.||+.+.+.. ..+.|+||||+|++.|.+.
T Consensus 42 ~tTNN~aEl~A~i~aL~~l~~~~--~~v~i~tDSqyVi~wi~~~ 83 (134)
T 4htu_A 42 IGTNNMGEFLAIVHGLRYLKERN--SRKPIYSNSQTAIKWVKDK 83 (134)
T ss_dssp EECHHHHHHHHHHHHHHHHHHTT--CCCCEEESCHHHHHHHHHT
T ss_pred CCchHHHHHHHHHHHHHHHHhCC--CCEEEEcchHHHHHHHHcC
Confidence 57999999999999999998743 2489999999999999875
No 17
>1rw3_A POL polyprotein; RNA and DNA dependent DNA polymerase, reverse transcriptase, transferase, replication; 3.00A {Moloney murine leukemia virus} SCOP: e.8.1.2
Probab=68.70 E-value=1.4 Score=39.25 Aligned_cols=42 Identities=7% Similarity=-0.037 Sum_probs=33.6
Q ss_pred CCChHHHHHHHHHHHHHHhhcCCCCCcEEEEeccHHHHHHHhc
Q psy3058 9 LSSSFTAEAFAMEMCLDNLINRPIPDNILIFTDSKSLISSMQQ 51 (244)
Q Consensus 9 ~~t~~~AEl~Ai~~al~~~~~~~~~~~i~i~tDs~~al~~l~~ 51 (244)
..+++..|+.||..|++.....-.+..++|+||+. ++..+.+
T Consensus 386 ~ys~~ekEllAi~~a~~~~~~yl~g~~~~v~tDh~-~~~~l~~ 427 (455)
T 1rw3_A 386 GWPPCLRMVAAIAVLTKDAGKLTMGQPLVIKAPHA-VEALVKQ 427 (455)
T ss_dssp SSCCSSHHHHHHHHHHHHHHGGGCSSCEEEECSSC-TTTTSSS
T ss_pred ccchHHHHHHHHHHHHHHHHHHcCCCcEEEEecCh-HHHHhCC
Confidence 45678899999999999987755567899999997 6655554
No 18
>2lnd_A De novo designed protein, PFK fold; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=48.67 E-value=39 Score=22.51 Aligned_cols=85 Identities=14% Similarity=0.153 Sum_probs=48.8
Q ss_pred EEEeccHHHHHHHhccc----ccc-----HHHHHHHHHHHHHHhcCCeEEEEeecCCCCCccchhhchHHHHHhhhcCCC
Q psy3058 37 LIFTDSKSLISSMQQLF----CKN-----ILIHDIQVACHKLILKGNNVKIIWIPSHCGIAGNEEVDKAAQSFINAQNYS 107 (244)
Q Consensus 37 ~i~tDs~~al~~l~~~~----~~~-----~~~~~i~~~~~~l~~~~~~v~~~Wvp~H~gi~gNe~AD~lAk~a~~~~~~~ 107 (244)
++.+-....|.+++... ++. ...++|.+.+..+.+.|..+ +.+|-|-+...-||.-.++-|++..-.-..
T Consensus 6 lvistdtniissvqerakhnypgryirtatssqdirdiiksmkdngkpl-vvfvngasqndvnefqneakkegvsydvlk 84 (112)
T 2lnd_A 6 LVISTDTNIISSVQERAKHNYPGRYIRTATSSQDIRDIIKSMKDNGKPL-VVFVNGASQNDVNEFQNEAKKEGVSYDVLK 84 (112)
T ss_dssp EEECSCHHHHHHHHHHHHHHSCTTTEEEECSHHHHHHHHHHHTTCCSCE-EEEECSCCHHHHHHHHHHHHHHTCEEEEEE
T ss_pred EEEecCchHHHHHHHHhhcCCCCceeeeccchhhHHHHHHHHHhcCCeE-EEEecCcccccHHHHHHHHHhcCcchhhhc
Confidence 33344445566665532 222 23577888888888888776 456888877777777766655554322111
Q ss_pred cccHHHHHHHHHHHH
Q psy3058 108 LITHVDLKAFLKNEF 122 (244)
Q Consensus 108 ~~~~a~ik~~ik~~~ 122 (244)
...+..+.+.+++-+
T Consensus 85 stdpeeltqrvrefl 99 (112)
T 2lnd_A 85 STDPEELTQRVREFL 99 (112)
T ss_dssp CCCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHH
Confidence 224555655555443
No 19
>3alr_A Nanos protein; zinc-finger, translational repression, RNA, 3'-UTR, metal BI protein; 2.10A {Danio rerio}
Probab=45.15 E-value=11 Score=26.42 Aligned_cols=24 Identities=21% Similarity=0.436 Sum_probs=21.0
Q ss_pred CCCCCCCCccccccccccccCcHH
Q psy3058 182 PQCEVCNVTITVKHILCHCTKYTQ 205 (244)
Q Consensus 182 p~C~~Cg~~et~~H~l~~Cp~~~~ 205 (244)
-.|+.||+.-+-.|.+-.||....
T Consensus 72 Y~CpiCGATGd~AHT~kYCP~~~~ 95 (106)
T 3alr_A 72 YKCPLCGATGAKAHTKRFCPMVDK 95 (106)
T ss_dssp CCCTTTCCCGGGCCCGGGCTTCGG
T ss_pred ccCCCCCCcCCcccceecCCCCCC
Confidence 469999999999999999998653
No 20
>2bhu_A Maltooligosyltrehalose trehalohydrolase; alpha-amylase, protein-carbohydrate complex, desiccation resistance; HET: TRS PGE; 1.1A {Deinococcus radiodurans} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 2bhy_A* 2bhz_A* 2bxy_A* 2bxz_A* 2by0_A* 2by1_A* 2by2_A* 2by3_A*
Probab=25.92 E-value=71 Score=29.35 Aligned_cols=33 Identities=21% Similarity=0.153 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHhcCCeEEEEeecCCCCCccch
Q psy3058 59 IHDIQVACHKLILKGNNVKIIWIPSHCGIAGNE 91 (244)
Q Consensus 59 ~~~i~~~~~~l~~~~~~v~~~Wvp~H~gi~gNe 91 (244)
..++...+.++..+|..|.+-+|+.|++..+|.
T Consensus 192 ~~d~~~lv~~~H~~Gi~VilD~V~NH~~~~~~~ 224 (602)
T 2bhu_A 192 PEDLMALVDAAHRLGLGVFLDVVYNHFGPSGNY 224 (602)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEECCSCCCSSSCC
T ss_pred HHHHHHHHHHHHHCCCEEEEEecccccccCCcc
Confidence 567778888888999999999999999977764
No 21
>2qgp_A HNH endonuclease; Q39X46, GMR87, X-RAY, NESG, structural genomics, PSI-2, protein structure initiative; 2.60A {Geobacter metallireducens gs-15}
Probab=23.00 E-value=25 Score=24.81 Aligned_cols=17 Identities=24% Similarity=0.663 Sum_probs=13.3
Q ss_pred CCCCCCCCCc-----ccccccc
Q psy3058 181 PPQCEVCNVT-----ITVKHIL 197 (244)
Q Consensus 181 ~p~C~~Cg~~-----et~~H~l 197 (244)
...|++||.. .+++|++
T Consensus 35 ~~~C~yCg~~~~~~~~~vDHIi 56 (112)
T 2qgp_A 35 RGICHYCGEIFPPEELTMDHLV 56 (112)
T ss_dssp HTBCTTTCCBCCGGGEEEEESS
T ss_pred CCcCCCCCCcCCCCCcEEEEEe
Confidence 4689999973 3789986
No 22
>1wzl_A Alpha-amylase II; pullulan, GH-13, alpha-amylase family, hydrolase; 2.00A {Thermoactinomyces vulgaris} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 1ji2_A 1bvz_A 1vfk_A* 3a6o_A* 1wzm_A 1jf6_A 1wzk_A 2d2o_A* 1jib_A* 1jl8_A* 1vb9_A* 1g1y_A* 1vfo_A* 1vfm_A* 1vfu_A* 1jf5_A
Probab=22.94 E-value=74 Score=28.99 Aligned_cols=31 Identities=10% Similarity=0.054 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHhcCCeEEEEeecCCCCCcc
Q psy3058 59 IHDIQVACHKLILKGNNVKIIWIPSHCGIAG 89 (244)
Q Consensus 59 ~~~i~~~~~~l~~~~~~v~~~Wvp~H~gi~g 89 (244)
..++...+.++.++|..|.+-||+.|++...
T Consensus 219 ~~dfk~lv~~~H~~Gi~VilD~V~NH~~~~~ 249 (585)
T 1wzl_A 219 LPTFRRLVDEAHRRGIKIILDAVFNHAGDQF 249 (585)
T ss_dssp HHHHHHHHHHHHTTTCEEEEEECCSBCCTTS
T ss_pred HHHHHHHHHHHHHCCCEEEEEEcCCcCCCcc
Confidence 5677788888889999999999999998654
No 23
>1j0h_A Neopullulanase; beta-alpha-barrels, hydrolase; 1.90A {Geobacillus stearothermophilus} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 1j0i_A* 1j0j_A* 1j0k_A* 1sma_A 1gvi_A*
Probab=22.40 E-value=97 Score=28.20 Aligned_cols=32 Identities=19% Similarity=0.207 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHhcCCeEEEEeecCCCCCccc
Q psy3058 59 IHDIQVACHKLILKGNNVKIIWIPSHCGIAGN 90 (244)
Q Consensus 59 ~~~i~~~~~~l~~~~~~v~~~Wvp~H~gi~gN 90 (244)
..++...+.++.++|..|.+-||+.|++....
T Consensus 222 ~~df~~lv~~~H~~Gi~VilD~V~NH~~~~~~ 253 (588)
T 1j0h_A 222 KETLKTLIDRCHEKGIRVMLDAVFNHCGYEFA 253 (588)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEECCSBCCTTCH
T ss_pred HHHHHHHHHHHHHCCCEEEEEECcCcCcccch
Confidence 56777788888899999999999999987554
No 24
>2akl_A PHNA-like protein PA0128; two domains, Zn binding protein, beta-strand protein, structural genomics, PSI; NMR {Pseudomonas aeruginosa PAO1} SCOP: b.34.11.2 g.41.3.5
Probab=21.54 E-value=46 Score=24.33 Aligned_cols=27 Identities=26% Similarity=0.551 Sum_probs=17.8
Q ss_pred CCCCCCCCCCCccccc-cccccccCcHH
Q psy3058 179 TDPPQCEVCNVTITVK-HILCHCTKYTQ 205 (244)
Q Consensus 179 ~~~p~C~~Cg~~et~~-H~l~~Cp~~~~ 205 (244)
..-|.|+.|+.+.+-+ --++.||-...
T Consensus 25 ~~lP~CP~C~seytYeDg~l~vCPeC~h 52 (138)
T 2akl_A 25 STLPPCPQCNSEYTYEDGALLVCPECAH 52 (138)
T ss_dssp CCSCCCTTTCCCCCEECSSSEEETTTTE
T ss_pred ccCCCCCCCCCcceEecCCeEECCcccc
Confidence 3469999999753222 23688997553
No 25
>2i0f_A 6,7-dimethyl-8-ribityllumazine synthase 1; lumazine synthase RIBH1, transferase; 2.22A {Brucella abortus} PDB: 2f59_A 2o6h_A*
Probab=21.34 E-value=72 Score=24.02 Aligned_cols=31 Identities=16% Similarity=0.219 Sum_probs=20.1
Q ss_pred HHHHhcCCeEEEEeecCCCCCccchhhchHHHH
Q psy3058 67 HKLILKGNNVKIIWIPSHCGIAGNEEVDKAAQS 99 (244)
Q Consensus 67 ~~l~~~~~~v~~~Wvp~H~gi~gNe~AD~lAk~ 99 (244)
..|...|.+|.+.||||-=.+|. .|.+||+.
T Consensus 36 ~~l~~~G~~i~v~~VPGafEiP~--aa~~la~~ 66 (157)
T 2i0f_A 36 AALDEAGATYDVVTVPGALEIPA--TISFALDG 66 (157)
T ss_dssp HHHHHTTCEEEEEEESSGGGHHH--HHHHHHHH
T ss_pred HHHHHcCCCeEEEECCcHHHHHH--HHHHHHhh
Confidence 44556678999999998644443 34555543
No 26
>1ua7_A Alpha-amylase; beta-alpha-barrels, acarbose, greek-KEY motif, hydrolase; HET: ACI GLD GLC G6D BGC; 2.21A {Bacillus subtilis} SCOP: b.71.1.1 c.1.8.1 PDB: 1bag_A* 3dc0_A
Probab=20.42 E-value=90 Score=26.95 Aligned_cols=31 Identities=13% Similarity=0.074 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHhcCCeEEEEeecCCCCCcc
Q psy3058 59 IHDIQVACHKLILKGNNVKIIWIPSHCGIAG 89 (244)
Q Consensus 59 ~~~i~~~~~~l~~~~~~v~~~Wvp~H~gi~g 89 (244)
..++.+.+.++..+|..|-+-+||.|++...
T Consensus 74 ~~d~~~lv~~~h~~Gi~VilD~V~NH~~~~~ 104 (422)
T 1ua7_A 74 EQEFKEMCAAAEEYGIKVIVDAVINHTTFDY 104 (422)
T ss_dssp HHHHHHHHHHHHTTTCEEEEEECCSBCCSCT
T ss_pred HHHHHHHHHHHHHCCCEEEEEeccCcccCCc
Confidence 5677788888889999999999999997644
No 27
>1ea9_C Cyclomaltodextrinase; hydrolase, glycosidase; 3.2A {Bacillus SP} SCOP: b.1.18.2 b.71.1.1 c.1.8.1
Probab=20.41 E-value=72 Score=29.04 Aligned_cols=31 Identities=13% Similarity=0.012 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHhcCCeEEEEeecCCCCCcc
Q psy3058 59 IHDIQVACHKLILKGNNVKIIWIPSHCGIAG 89 (244)
Q Consensus 59 ~~~i~~~~~~l~~~~~~v~~~Wvp~H~gi~g 89 (244)
..++...+.++..+|..|.+-|||.|++...
T Consensus 218 ~~df~~lv~~~H~~Gi~VilD~V~NH~~~~~ 248 (583)
T 1ea9_C 218 KDTLKKLVDLCHERGIRVLLDAVFNHSGRTF 248 (583)
T ss_dssp HHHHHHHHHHHTTTTCEEEEECCCSBCCTTT
T ss_pred HHHHHHHHHHHHHCCCEEEEEEccccCCCcc
Confidence 5677788888889999999999999998643
No 28
>3m07_A Putative alpha amylase; IDP00968, csgid, structural genomics, center for structural genomics of infectious diseases, unknown function; HET: BTB PG4 PGE; 1.40A {Salmonella enterica subsp}
Probab=20.35 E-value=1e+02 Score=28.49 Aligned_cols=34 Identities=21% Similarity=0.110 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHhcCCeEEEEeecCCCCCccchh
Q psy3058 59 IHDIQVACHKLILKGNNVKIIWIPSHCGIAGNEE 92 (244)
Q Consensus 59 ~~~i~~~~~~l~~~~~~v~~~Wvp~H~gi~gNe~ 92 (244)
..++...+.++..+|..|.+-+|+.|+|..+|-.
T Consensus 202 ~~~~~~lv~~~H~~Gi~VilD~V~NH~~~~~~~~ 235 (618)
T 3m07_A 202 PDDFKAFIDAAHGYGLSVVLDIVLNHFGPEGNYL 235 (618)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEECCSCCCSSSCCH
T ss_pred HHHHHHHHHHHHHCCCEEEEeecCccCCCCcccc
Confidence 4677777888888999999999999999877654
No 29
>1a6b_B Momulv, zinc finger protein NCP10; nucleocapsid protein, intercalation, nucleic acid, retrovirus, viral protein/DNA complex; HET: DNA; NMR {Synthetic} SCOP: g.40.1.1
Probab=20.13 E-value=73 Score=18.02 Aligned_cols=23 Identities=30% Similarity=0.567 Sum_probs=17.5
Q ss_pred CCCCCCCCCCCCccccccccccccCc
Q psy3058 178 RTDPPQCEVCNVTITVKHILCHCTKY 203 (244)
Q Consensus 178 ~~~~p~C~~Cg~~et~~H~l~~Cp~~ 203 (244)
..+...|..||.. .|+.-.||.-
T Consensus 7 ~~~~~~C~~Cgk~---GH~ardCP~~ 29 (40)
T 1a6b_B 7 QLDRDQCAYCKEK---GHWAKDCPKK 29 (40)
T ss_dssp SCCSSSCSSSCCT---TCCTTSCSSS
T ss_pred CCCCCeeeECCCC---CcchhhCcCC
Confidence 3456789999974 6889999973
No 30
>4aef_A Neopullulanase (alpha-amylase II); hydrolase, thermostability, high temperature; 2.34A {Pyrococcus furiosus}
Probab=20.13 E-value=1.1e+02 Score=28.08 Aligned_cols=31 Identities=10% Similarity=-0.164 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHhcCCeEEEEeecCCCCCcc
Q psy3058 59 IHDIQVACHKLILKGNNVKIIWIPSHCGIAG 89 (244)
Q Consensus 59 ~~~i~~~~~~l~~~~~~v~~~Wvp~H~gi~g 89 (244)
..++.+.+.++..+|..|-+-+|+.|++...
T Consensus 285 ~~df~~LV~~aH~~GI~VIlD~V~NHts~~h 315 (645)
T 4aef_A 285 DRAFVDLLSELKRFDIKVILDGVFHHTSFFH 315 (645)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEECCSBCCTTS
T ss_pred HHHHHHHHHHhhhcCCEEEEEecccccccCC
Confidence 4667777788888999999999999998643
Done!