RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy3058
(244 letters)
>3p1g_A Xenotropic murine leukemia virus-related virus (X H domain; XMRV,
RNAse H, reverse transcriptase, transcription; 1.50A
{Xenotropic mulv-related virus} PDB: 3v1q_A 3v1o_A
3v1r_A* 2hb5_A
Length = 165
Score = 39.4 bits (92), Expect = 3e-04
Identities = 15/69 (21%), Positives = 27/69 (39%), Gaps = 6/69 (8%)
Query: 35 NILIFTDSKSLISSMQQLF-CKNILIHDIQVACHKLILKGNNVKIIWIPSHCG-----IA 88
+ ++TDS+ ++ + I + +A K + + II P H
Sbjct: 82 KLNVYTDSRYAFATAHVHSEGREIKNKNEILALLKALFLPKRLSIIHCPGHQKGNSAEAR 141
Query: 89 GNEEVDKAA 97
GN D+AA
Sbjct: 142 GNRMADQAA 150
>2kq2_A Ribonuclease H-related protein; PSI, NESG, protein structure, APO
enzyme, structural genomics, protein structure
initiative; NMR {Desulfitobacterium hafniense dcb-2}
PDB: 2kw4_A
Length = 147
Score = 39.3 bits (92), Expect = 3e-04
Identities = 13/81 (16%), Positives = 25/81 (30%), Gaps = 10/81 (12%)
Query: 19 AMEMCLDNLINRPIPDNILIFTDSKSLISSMQQLFCKNILIHDIQVACHKLILK-GNNVK 77
A++ I I D + + ++ A KL+ +
Sbjct: 61 AVKKASQL------GVKIRILHDYAGIAFWATGEWKAK---NEFTQAYAKLMNQYRGIYS 111
Query: 78 IIWIPSHCGIAGNEEVDKAAQ 98
+ +H G N+ VD A+
Sbjct: 112 FEKVKAHSGNEFNDYVDMKAK 132
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 38.7 bits (89), Expect = 0.001
Identities = 38/225 (16%), Positives = 71/225 (31%), Gaps = 66/225 (29%)
Query: 19 AMEMCLDNL-------------I---NRPIPDNIL-------IFTDSKSLISSMQQ--LF 53
+E L+ L + + IP +L I +D +++ + + L
Sbjct: 358 IIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLV 417
Query: 54 CKN-----ILIHDIQV----------ACHKLILKGNNVKIIWIPSHCGIAGNEEVDKAAQ 98
K I I I + A H+ I+ N+ + +D+
Sbjct: 418 EKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIP---PYLDQYFY 474
Query: 99 SFI--------NAQNYSLITHV--DLKAFLKNEFKKKWQIWWDNIQPPNKIKD--TVKEW 146
S I + + +L V D + FL+ + + W + N ++ K +
Sbjct: 475 SHIGHHLKNIEHPERMTLFRMVFLDFR-FLEQKIRHDSTAWNASGSILNTLQQLKFYKPY 533
Query: 147 QTSN--RNSRKEEIILSRL-RIG-------HTRLTHGFLMERTDP 181
N + R IL L +I +T L LM +
Sbjct: 534 ICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEA 578
Score = 36.8 bits (84), Expect = 0.006
Identities = 47/276 (17%), Positives = 86/276 (31%), Gaps = 70/276 (25%)
Query: 1 MSTYRLNSLSSSFTAEAFAMEMCLDNLINRP---IPDNILIFTDSKSLISSMQQL-FCKN 56
MS + S + D L N N+ L ++ +L KN
Sbjct: 95 MSPIKTEQRQPSMMTRMY--IEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKN 152
Query: 57 ILIHD----------IQVACHKLILKGNNVKIIWIP-SHCGIAGNEEVDKAAQSFI---- 101
+LI + V + + KI W+ +C E V + Q +
Sbjct: 153 VLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSP--ETVLEMLQKLLYQID 210
Query: 102 --------NAQNYSLITHVDLKAFLKNEFKKKWQIWWDNIQPPNK--IKDTV---KEWQT 148
++ N L H ++A L+ K K N + V K W
Sbjct: 211 PNWTSRSDHSSNIKLRIH-SIQAELRRLLKSK--------PYENCLLVLLNVQNAKAWNA 261
Query: 149 SNRNSRKEEIILSRLR-----IGHTRLTHGFLMERTDPPQCEVCNVTITVKHILCHCTKY 203
N + + ++ +R + + TH L + T+T + KY
Sbjct: 262 FNLSCKI--LLTTRFKQVTDFLSAATTTHISLDHHSM---------TLTPDEVKSLLLKY 310
Query: 204 TQIRLKYNLNNL--QIKDILGDNPRTIDLLFRFLKD 237
R + +L ++ NPR + ++ ++D
Sbjct: 311 LDCRPQ----DLPREVLTT---NPRRLSIIAESIRD 339
Score = 33.7 bits (76), Expect = 0.059
Identities = 31/262 (11%), Positives = 83/262 (31%), Gaps = 56/262 (21%)
Query: 24 LDNLINRPIPD------NILIFTDSKSLISSMQQLFCKNILIHDIQVACHK-----LILK 72
L N+ N + IL+ T K + + +I + + L+LK
Sbjct: 250 LLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLK 309
Query: 73 GNNVKIIWIPS--------HCGIAG-----------------NEEVDKAAQSFINAQNYS 107
+ + +P I +++ +S +N +
Sbjct: 310 YLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPA 369
Query: 108 LITH--VDLKAFLKNEF--KKKWQIWWDNIQPPNKIKDTVKEWQTS---NRNSRKEEIIL 160
L F + + W ++ + + V + + ++ I +
Sbjct: 370 EYRKMFDRLSVFPPSAHIPTILLSLIWFDV-IKSDVMVVVNKLHKYSLVEKQPKESTISI 428
Query: 161 ------SRLRIGHTRLTHGFLMERTDPPQCEVCNVTITVKHILCHCTKYTQIRLKYNLNN 214
++++ + H +++ + P+ + + ++ +Y + ++L N
Sbjct: 429 PSIYLELKVKLENEYALHRSIVDHYNIPKT-FDSDDLIPPYL----DQYFYSHIGHHLKN 483
Query: 215 LQIKDILGDNPRTIDLLFRFLK 236
++ + R + L FRFL+
Sbjct: 484 IEHPE-RMTLFRMVFLDFRFLE 504
Score = 33.7 bits (76), Expect = 0.059
Identities = 36/245 (14%), Positives = 70/245 (28%), Gaps = 71/245 (28%)
Query: 43 KSLISSMQQLFCKNILIHDIQVACHKLILKGNNVKIIWIPSHCGIAGNEEVDKAAQSFIN 102
K ++S + F N D+Q K IL + I + + +
Sbjct: 19 KDILSVFEDAFVDNFDCKDVQDMP-KSILSKEEIDHIIM------SKDAV---------- 61
Query: 103 AQNYSLITHVDLK------AFLKNEFKKKWQIWWDNIQPPNKIKDTVKEWQTSNRN---- 152
+ L + K F++ + ++ I+ + + R+
Sbjct: 62 SGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYN 121
Query: 153 ----------SRKEEII-----LSRLRIGHTRLTHGFLME------------RTDPPQCE 185
SR + + L LR L G + + QC+
Sbjct: 122 DNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDG--VLGSGKTWVALDVCLSYKVQCK 179
Query: 186 VCNVT--ITVKHILCHCTKYTQIRLKYNLNNL--QIK---DILGDNPRTIDLLFRFLKD- 237
+ + +K+ C+ + L+ L L QI D+ I L ++
Sbjct: 180 MDFKIFWLNLKN--CNSPE---TVLE-MLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAE 233
Query: 238 -SNLL 241
LL
Sbjct: 234 LRRLL 238
Score = 29.8 bits (66), Expect = 0.89
Identities = 33/218 (15%), Positives = 71/218 (32%), Gaps = 47/218 (21%)
Query: 27 LINRPIPDNILIFTD--SKSLISSMQQLFCKNILI--HDIQVACHKLILKGNNVKIIWIP 82
L ++P + +L+ + + ++ L CK IL+ QV L I +
Sbjct: 238 LKSKPYENCLLVLLNVQNAKAWNAFN-LSCK-ILLTTRFKQVT---DFLSAATTTHISLD 292
Query: 83 SHCGIAGNEEVDKAAQSFINAQNYSL----ITHVDLKAFLKNEFKKKWQIWWDNIQPPNK 138
H +EV +++ + L +T + + E + WDN
Sbjct: 293 HHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDN------ 346
Query: 139 IKDTVKEWQTSNRNSRKEEII---LSRLRIGHTR-LTHGFLMERTD---PPQ------CE 185
W+ N + + II L+ L R + + P +
Sbjct: 347 -------WKHVNCD-KLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFD 398
Query: 186 VCNVTITVKHILCHCTKYTQI-----RLKYNLNNLQIK 218
V + V ++ KY+ + ++ ++ ++
Sbjct: 399 V--IKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLE 434
>3hst_B Protein RV2228C/MT2287; ribonuclease H1, RV2228C N-terminal domain,
fusion protein, maltose binding protein, HYDR; HET: MLR
TAR; 2.25A {Mycobacterium tuberculosis}
Length = 141
Score = 36.1 bits (84), Expect = 0.002
Identities = 16/85 (18%), Positives = 30/85 (35%), Gaps = 6/85 (7%)
Query: 14 TAEAFAMEMCLDNLINRPIPDNILIFTDSKSLISSMQQLF-CKNILIHDIQVACHKLILK 72
AE + LD+ + + DSK ++ M + K+ + + V L +
Sbjct: 48 VAEYRGLIAGLDDAVKLGA-TEAAVLMDSKLVVEQMSGRWKVKHPDLLKLYVQAQALASQ 106
Query: 73 GNNVKIIWIPSHCGIAGNEEVDKAA 97
+ W+P N D+ A
Sbjct: 107 FRRINYEWVPRA----RNTYADRLA 127
>3qio_A GAG-POL polyprotein; RNAse H, inhibitor, nuclease, transferase,
hydrolase- complex; HET: QID; 1.40A {Hiv-1 M} PDB:
3qin_A* 3hyf_A* 1o1w_A 3lp3_A* 1hrh_A 3k2p_A* 1rdh_A
Length = 150
Score = 35.2 bits (82), Expect = 0.006
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 71 LKGNNVKIIWIPSHCGIAGNEEVDKAAQSFI 101
+K V + W+P+H GI GNE+VDK + I
Sbjct: 115 IKKEKVYLAWVPAHKGIGGNEQVDKLVSAGI 145
>2zd1_A Reverse transcriptase/ribonuclease H; P51/P66, hetero dimer, NNRTI,
nonnucleoside inhibitor, AIDS, HIV, rilpivirine,
diarylpyrimidine, DAPY, DNA recombination; HET: T27;
1.80A {Human immunodeficiency virus 1} PDB: 3is9_A*
3irx_A* 2ze2_A* 3bgr_A* 3qlh_A* 3klf_A* 3qo9_A* 1dlo_A
1bqm_A 2be2_A* 1s6q_A* 1s6p_A* 1s9g_A* 1suq_A* 2b5j_A*
2b6a_A* 2ban_A* 1s9e_A* 1hni_A* 1hnv_A* ...
Length = 557
Score = 35.9 bits (83), Expect = 0.009
Identities = 13/28 (46%), Positives = 20/28 (71%)
Query: 68 KLILKGNNVKIIWIPSHCGIAGNEEVDK 95
+ ++K V + W+P+H GI GNE+VDK
Sbjct: 525 EQLIKKEKVYLAWVPAHKGIGGNEQVDK 552
>2qkb_A Ribonuclease H1, HS-RNAse HC, RNAse H1; RNA/DNA hybrid; 2.40A {Homo
sapiens} PDB: 2qk9_A 2qkk_A*
Length = 154
Score = 34.5 bits (80), Expect = 0.011
Identities = 13/86 (15%), Positives = 30/86 (34%), Gaps = 21/86 (24%)
Query: 28 INRPIPDNILIFTDSKSLISSMQQLFC---------------KNI-LIHDIQVACHKLIL 71
+ ++++T+S I+ + N ++ +
Sbjct: 65 AKTQNINKLVLYTNSMFTINGITNWVQGWKKNGWKTSAGKEVINKEDFVALERLTQGM-- 122
Query: 72 KGNNVKIIWIPSHCGIAGNEEVDKAA 97
+++ + +P H G GNEE D+ A
Sbjct: 123 ---DIQWMHVPGHSGFIGNEEADRLA 145
>1mu2_A HIV-2 RT; HIV-2 reverse transcriptase, AIDS, polymerase, drug
design, transferase; 2.35A {Human immunodeficiency virus
2} SCOP: c.55.3.1 e.8.1.2 PDB: 1mu2_B
Length = 555
Score = 33.9 bits (78), Expect = 0.043
Identities = 12/34 (35%), Positives = 20/34 (58%)
Query: 68 KLILKGNNVKIIWIPSHCGIAGNEEVDKAAQSFI 101
+ ++K + + W+P+H GI GN+EVD I
Sbjct: 522 EEMIKKEAIYVAWVPAHKGIGGNQEVDHLVSQGI 555
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 29.7 bits (66), Expect = 0.60
Identities = 8/52 (15%), Positives = 19/52 (36%), Gaps = 13/52 (25%)
Query: 115 KAFLKNEFKKKWQIWWDNIQPPNKIKDTVKEWQTSNRNS-------RKEEII 159
+ + + KK + W + V++ + +NR + +II
Sbjct: 109 EQEWREKAKKDLEEWNQRQS------EQVEKNKINNRIADKAFYQQPDADII 154
>2e4l_A Ribonuclease HI, RNAse HI; hydrolase, endoribonuclease; 2.00A
{Shewanella oneidensis} PDB: 2zqb_A
Length = 158
Score = 29.4 bits (67), Expect = 0.64
Identities = 9/36 (25%), Positives = 16/36 (44%)
Query: 70 ILKGNNVKIIWIPSHCGIAGNEEVDKAAQSFINAQN 105
+ + + W+ H G A NE D+ A++ A
Sbjct: 112 AAQLHQIDWRWVKGHAGHAENERCDQLARAAAEANP 147
>1ril_A Ribonuclease H; hydrolase(endoribonuclease); 2.80A {Thermus
thermophilus} SCOP: c.55.3.1 PDB: 2rpi_A
Length = 166
Score = 29.1 bits (66), Expect = 0.79
Identities = 10/47 (21%), Positives = 19/47 (40%)
Query: 71 LKGNNVKIIWIPSHCGIAGNEEVDKAAQSFINAQNYSLITHVDLKAF 117
+ + V+ ++ H G NE VD+ A+ +Q + F
Sbjct: 116 MAPHRVRFHFVKGHTGHPENERVDREARRQAQSQAKTPCPPRAPTLF 162
>1jl1_A Ribonuclease HI; RNAse HI, protein stability, thermostability,
hydrogen exchange, cooperativity, hydrolase; 1.30A
{Escherichia coli} SCOP: c.55.3.1 PDB: 1f21_A 1jxb_A
1g15_A 1rch_A 1rdd_A 1rnh_A* 2rn2_A 1rda_A 1law_A 1rdb_A
1lav_A 3aa4_A 1rbu_A 1gob_A 1rdc_A 1kvc_A 3aa3_A 3aa2_A
3aa5_X 1rbv_A ...
Length = 155
Score = 29.0 bits (66), Expect = 0.80
Identities = 9/33 (27%), Positives = 15/33 (45%)
Query: 70 ILKGNNVKIIWIPSHCGIAGNEEVDKAAQSFIN 102
L + +K W+ H G NE D+ A++
Sbjct: 110 ALGQHQIKWEWVKGHAGHPENERADELARAAAM 142
>3vi3_A Integrin alpha-5; beta propeller fold, rossman fold, beta sandwich,
fibronecti receptor, cell adhesion-immune system
complex; HET: NAG BMA MAN; 2.90A {Homo sapiens} PDB:
3vi4_A*
Length = 632
Score = 29.8 bits (66), Expect = 0.92
Identities = 17/97 (17%), Positives = 35/97 (36%), Gaps = 14/97 (14%)
Query: 153 SRKEEIILSRLRIGHTR---LTHGFLMERTDPPQCEVCNVTITVKHILCHCTKYT--QIR 207
+K++ + R +R LT L++ C + I +++ K + I
Sbjct: 509 WQKQKGGVRRALFLASRQATLTQTLLIQNGAREDCR--EMKIYLRNESEFRDKLSPIHIA 566
Query: 208 LKYNLNNLQIKD------IL-GDNPRTIDLLFRFLKD 237
L ++L+ D L + I+ + L D
Sbjct: 567 LNFSLDPQAPVDSHGLRPALHYQSKSRIEDKAQILLD 603
>3h08_A RNH (ribonuclease H); RNAse H, 3D-structure, endonuclease,
hydrolase, magnesium, metal-binding; 1.60A
{Chlorobaculum tepidum}
Length = 146
Score = 28.6 bits (65), Expect = 1.1
Identities = 6/31 (19%), Positives = 10/31 (32%)
Query: 75 NVKIIWIPSHCGIAGNEEVDKAAQSFINAQN 105
V + H N D+ A+ I +
Sbjct: 116 RVTFHKVKGHSDNPYNSRADELARLAIKENS 146
>1te5_A Conserved hypothetical protein; glutamine amidotransferase,
amidotransferase, structural genomics, PSI, protein
structure initiative; 2.00A {Pseudomonas aeruginosa
PAO1} SCOP: d.153.1.1
Length = 257
Score = 28.9 bits (64), Expect = 1.5
Identities = 15/72 (20%), Positives = 24/72 (33%), Gaps = 2/72 (2%)
Query: 126 WQIWWDNIQPPNKIKDTVKEWQTSNRNSRKEEIILSRLRIGHTRL-THGFL-MERTDPPQ 183
W I + + +D + + + I S IGH R G + + T P
Sbjct: 36 WGIAFYEGRGVRLFQDPLASVDSEVARLVQRFPIKSETVIGHIRQANVGKVGLSNTHPFI 95
Query: 184 CEVCNVTITVKH 195
E+ T H
Sbjct: 96 RELGGRYWTFAH 107
>1tz7_A 4-alpha-glucanotransferase; (beta, alpha)8- barrel; 2.15A {Aquifex
aeolicus} SCOP: c.1.8.1
Length = 505
Score = 28.8 bits (65), Expect = 1.9
Identities = 14/72 (19%), Positives = 26/72 (36%), Gaps = 7/72 (9%)
Query: 87 IAGNEEVDKAAQSFINAQNYSLITHVDLKAFLKNEFKKKWQIWWDNIQPPNKIKDTVKEW 146
N + + F+ +Y L + A +K E K+W W + ++ K+ +K
Sbjct: 131 AFKNFRRFELLEDFLKEHSYWLRDYALYMA-IKEEEGKEWYEWDEELKRRE--KEALKRV 187
Query: 147 QTSNRNSRKEEI 158
N K
Sbjct: 188 ----LNKLKGRF 195
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 28.9 bits (64), Expect = 1.9
Identities = 15/74 (20%), Positives = 27/74 (36%), Gaps = 20/74 (27%)
Query: 168 TR---LTHGFLMERTDPPQCEVCNVTITVKHILCHCTKYTQIRLKYNLNNLQIKDILG-- 222
TR L+HG L + V +Q++ ++N + +
Sbjct: 6 TRPLTLSHGSL------------EHVLLVPTAS-FFI-ASQLQEQFNKILPEPTEGFAAD 51
Query: 223 DNPRT-IDLLFRFL 235
D P T +L+ +FL
Sbjct: 52 DEPTTPAELVGKFL 65
Score = 27.3 bits (60), Expect = 5.4
Identities = 6/40 (15%), Positives = 16/40 (40%), Gaps = 5/40 (12%)
Query: 193 VKHILCHCTKYTQIRLKYNLNNLQIKDILGDNPRTIDLLF 232
+ + + + ++ I DI+ +NP + + F
Sbjct: 1642 AQDVWNRADNHFKDTYGFS-----ILDIVINNPVNLTIHF 1676
>2bkw_A Alanine-glyoxylate aminotransferase 1; analine-glyoxylate
aminotransferase, pyridoxal-5-phosphate, SAD, glycolate
pathway; HET: LLP; 2.57A {Saccharomyces cerevisiae}
SCOP: c.67.1.3
Length = 385
Score = 28.0 bits (63), Expect = 3.2
Identities = 8/33 (24%), Positives = 14/33 (42%), Gaps = 4/33 (12%)
Query: 9 LSSSFTAEAFAMEMCLDNLINRPIP-DNILIFT 40
L+ S T ++ N I P N+L+ +
Sbjct: 64 LAGSGTL---GWDIFASNFILSKAPNKNVLVVS 93
>1zbf_A Ribonuclease H-related protein; RNAse H, RNA/DNA hybrid, DDE motif,
hydrolase; 1.50A {Bacillus halodurans} SCOP: c.55.3.1
PDB: 1zbi_A 2g8u_A 2g8i_A 2g8h_A 2g8k_A 2g8f_A 2g8v_A
2g8w_A 3ey1_A* 1zbl_A 3d0p_A* 3i8d_A* 2r7y_A*
Length = 142
Score = 27.1 bits (60), Expect = 3.2
Identities = 14/74 (18%), Positives = 30/74 (40%), Gaps = 9/74 (12%)
Query: 15 AEAFAMEMCLDNLINRPIPDNILIFTDSKSLISSMQQLFCKNILIHDIQVA-CHKLI--- 70
E A+ L L R I+++S++ I ++ K+ L+ + + A KL+
Sbjct: 54 GEFLAIVHGLRYLKERNS--RKPIYSNSQTAIKWVKDKKAKSTLVRNEETALIWKLVDEA 111
Query: 71 ---LKGNNVKIIWI 81
L + + +
Sbjct: 112 EEWLNTHTYETPIL 125
>3fg1_A Allene oxide synthase-lipoxygenase protein; arichidonic metabolism,
dioxygenase, fatty ACI biosynthesis, heme, iron, lipid
synthesis, lyase; HET: GOL; 1.85A {Plexaura homomalla}
PDB: 3fg4_A* 3fg3_A* 2fnq_A
Length = 696
Score = 27.9 bits (61), Expect = 3.3
Identities = 15/149 (10%), Positives = 38/149 (25%), Gaps = 11/149 (7%)
Query: 36 ILIFTDSKSLISSMQQLFCKNILIHDIQVACHKLILKGNNVKIIWIPSHCGIAGNEEVDK 95
I + +D S F ++I ++ P + + +
Sbjct: 69 IELHSDGGGYWSGDPDWFVNRVIIISST-----------QDRVYSFPCFRWVIKDMVLFP 117
Query: 96 AAQSFINAQNYSLITHVDLKAFLKNEFKKKWQIWWDNIQPPNKIKDTVKEWQTSNRNSRK 155
+ + ++++ K + + +W D++ K K + K
Sbjct: 118 GEATLPFNEVPAIVSEQRQKELEQRKLTYQWDYVSDDMPGNIKAKTHDDLPRDVQFTDEK 177
Query: 156 EEIILSRLRIGHTRLTHGFLMERTDPPQC 184
+ L G L +
Sbjct: 178 SRSYQESRKAALVNLGIGSLFTMFENWDS 206
>2io5_A ASF1A protein; chaperone, chaperone-structural protein complex;
2.70A {Homo sapiens} SCOP: b.1.22.1
Length = 175
Score = 27.3 bits (60), Expect = 4.2
Identities = 24/102 (23%), Positives = 40/102 (39%), Gaps = 12/102 (11%)
Query: 145 EWQ---TSNRNSRKEEIILSRLRIG-HTRLTHGFLMERTDPPQCEVCN----VTITVKHI 196
EW+ + S + + +L + +G H F+ + D P + V +TV I
Sbjct: 42 EWKIIYVGSAESEEYDQVLDSVLVGPVPAGRHMFVFQ-ADAPNPGLIPDADAVGVTVVLI 100
Query: 197 LCHCTKYTQIRLKYNLNNLQIKDILGDNPRT---IDLLFRFL 235
C IR+ Y +NN + L +NP L R +
Sbjct: 101 TCTYRGQEFIRVGYYVNNEYTETELRENPPVKPDFSKLQRNI 142
>3oy2_A Glycosyltransferase B736L; rossmann fold, GDP-mannose, sugar, VIRU
proteins, viral protein,transferase; 2.31A {Paramecium
bursaria chlorella virus NY} PDB: 3oy7_A*
Length = 413
Score = 27.1 bits (59), Expect = 6.2
Identities = 20/184 (10%), Positives = 47/184 (25%), Gaps = 15/184 (8%)
Query: 24 LDNLINRPIPDNILIFTDSKSLISSMQQL-----FCKNILIHDIQVACHKL----ILKGN 74
L I+ PD ++I+ D + + + + K +L D+ + I
Sbjct: 73 LSEFIDVHKPDIVMIYNDPIVIGNYLLAMGKCSHRTKIVLYVDLVSKNIRENLWWIFSHP 132
Query: 75 NVKIIWIPSHCGIAGNEEV--DKAAQSFINAQNYSLITHVDLKAFLKNEFKKKWQIWWDN 132
V + S C I+ + + I L + +
Sbjct: 133 KVVGVMAMSKCWISDICNYGCKVPINIVSHFVDTKTIYDARKLVGLSEYNDDVLFLNMNR 192
Query: 133 IQPPNKIKDTVKEWQTSNRNSRKEEIILSRLRIGHTRLTHGFLMERTDPPQCEVCNVTIT 192
++ V ++ + ++ F + + V
Sbjct: 193 NTARKRLDIYVLAAARFISKYPDAKVR----FLCNSHHESKFDLHSIALRELVASGVDNV 248
Query: 193 VKHI 196
H+
Sbjct: 249 FTHL 252
>2idc_A Anti-silencing protein 1 and histone H3 chimera; IG-like fold,
ASF1, chaperone, chromatin, repli chaperone complex;
2.20A {Saccharomyces cerevisiae}
Length = 179
Score = 26.5 bits (58), Expect = 7.0
Identities = 24/119 (20%), Positives = 52/119 (43%), Gaps = 10/119 (8%)
Query: 125 KWQIWWDNIQPPNKIKDTVKEWQTSNRNSRKEEIILSRLRIG-HTRLTHGFLMERTDPPQ 183
+++I ++ ++ + + S+R S + L + +G + F+ DPP
Sbjct: 25 EFEITFECLESLKHDLEWKLTYVGSSR-SLDHDQELDSILVGPVPVGVNKFVFS-ADPPS 82
Query: 184 CEVCN----VTITVKHILCHCTKYTQIRLKYNLNNLQIKDILGDNPRT---IDLLFRFL 235
E+ V++TV + C +R+ Y +NN ++ L +NP +D + R +
Sbjct: 83 AELIPASELVSVTVILLSCSYDGREFVRVGYYVNNEYDEEELRENPPAKVQVDHIVRNI 141
>2i32_A Anti-silencing factor 1 paralog A; histone deposition, chromatin
regulation, histone chaperones, ASF1, HIRA, CAF-1,
replication chaperone; 2.70A {Homo sapiens} SCOP:
b.1.22.1 PDB: 1tey_A 2iij_A 3aad_B
Length = 182
Score = 26.1 bits (57), Expect = 8.6
Identities = 24/102 (23%), Positives = 40/102 (39%), Gaps = 12/102 (11%)
Query: 145 EWQ---TSNRNSRKEEIILSRLRIG-HTRLTHGFLMERTDPPQCEVCN----VTITVKHI 196
EW+ + S + + +L + +G H F+ + D P + V +TV I
Sbjct: 64 EWKIIYVGSAESEEYDQVLDSVLVGPVPAGRHMFVFQ-ADAPNPGLIPDADAVGVTVVLI 122
Query: 197 LCHCTKYTQIRLKYNLNNLQIKDILGDNP---RTIDLLFRFL 235
C IR+ Y +NN + L +NP L R +
Sbjct: 123 TCTYRGQEFIRVGYYVNNEYTETELRENPPVKPDFSKLQRNI 164
>1i39_A Ribonuclease HII, RNAse HII; mixed beta sheet, helix-loop-helix,
hydrolase; 1.95A {Archaeoglobus fulgidus} SCOP: c.55.3.1
PDB: 1i3a_A 3p83_D*
Length = 225
Score = 26.0 bits (58), Expect = 9.7
Identities = 12/50 (24%), Positives = 19/50 (38%), Gaps = 3/50 (6%)
Query: 19 AMEMCLDNLINRPIPDNILIFTDSKSLISSMQQLFCKNILIHDIQVACHK 68
++ C +I R P+ + DS +I + I VA HK
Sbjct: 101 ILKECYAEIILRLKPEIAYV--DSPDVIPERLSRELEEI-TGLRVVAEHK 147
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.136 0.421
Gapped
Lambda K H
0.267 0.0474 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,654,472
Number of extensions: 203713
Number of successful extensions: 525
Number of sequences better than 10.0: 1
Number of HSP's gapped: 520
Number of HSP's successfully gapped: 38
Length of query: 244
Length of database: 6,701,793
Length adjustment: 91
Effective length of query: 153
Effective length of database: 4,160,982
Effective search space: 636630246
Effective search space used: 636630246
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 56 (26.0 bits)