BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy306
(190 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2NOX|A Chain A, Crystal Structure Of Tryptophan 2,3-dioxygenase From
Ralstonia Metallidurans
pdb|2NOX|B Chain B, Crystal Structure Of Tryptophan 2,3-dioxygenase From
Ralstonia Metallidurans
pdb|2NOX|C Chain C, Crystal Structure Of Tryptophan 2,3-dioxygenase From
Ralstonia Metallidurans
pdb|2NOX|D Chain D, Crystal Structure Of Tryptophan 2,3-dioxygenase From
Ralstonia Metallidurans
pdb|2NOX|E Chain E, Crystal Structure Of Tryptophan 2,3-dioxygenase From
Ralstonia Metallidurans
pdb|2NOX|F Chain F, Crystal Structure Of Tryptophan 2,3-dioxygenase From
Ralstonia Metallidurans
pdb|2NOX|G Chain G, Crystal Structure Of Tryptophan 2,3-dioxygenase From
Ralstonia Metallidurans
pdb|2NOX|H Chain H, Crystal Structure Of Tryptophan 2,3-dioxygenase From
Ralstonia Metallidurans
pdb|2NOX|I Chain I, Crystal Structure Of Tryptophan 2,3-dioxygenase From
Ralstonia Metallidurans
pdb|2NOX|J Chain J, Crystal Structure Of Tryptophan 2,3-dioxygenase From
Ralstonia Metallidurans
pdb|2NOX|K Chain K, Crystal Structure Of Tryptophan 2,3-dioxygenase From
Ralstonia Metallidurans
pdb|2NOX|L Chain L, Crystal Structure Of Tryptophan 2,3-dioxygenase From
Ralstonia Metallidurans
pdb|2NOX|M Chain M, Crystal Structure Of Tryptophan 2,3-dioxygenase From
Ralstonia Metallidurans
pdb|2NOX|N Chain N, Crystal Structure Of Tryptophan 2,3-dioxygenase From
Ralstonia Metallidurans
pdb|2NOX|O Chain O, Crystal Structure Of Tryptophan 2,3-dioxygenase From
Ralstonia Metallidurans
pdb|2NOX|P Chain P, Crystal Structure Of Tryptophan 2,3-dioxygenase From
Ralstonia Metallidurans
Length = 281
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
Query: 65 AILITMYRDEPRFHLPSQILSALMDIDCCTAKWRHNHVLMVQRMIGSQHLGTGGTSGYQY 124
A + +YR+ ++ +D++ +WR HV V+R+IG + GTGGT G Y
Sbjct: 203 AAWLEVYRNPSAHWELYELGEKFVDLEDAFRQWRFRHVTTVERVIGFKR-GTGGTEGVSY 261
Query: 125 LRSTL 129
LR L
Sbjct: 262 LRRML 266
>pdb|3BK9|A Chain A, H55a Mutant Of Tryptophan 2,3-Dioxygenase From Xanthomonas
Campestris
pdb|3BK9|B Chain B, H55a Mutant Of Tryptophan 2,3-Dioxygenase From Xanthomonas
Campestris
pdb|3BK9|C Chain C, H55a Mutant Of Tryptophan 2,3-Dioxygenase From Xanthomonas
Campestris
pdb|3BK9|D Chain D, H55a Mutant Of Tryptophan 2,3-Dioxygenase From Xanthomonas
Campestris
pdb|3BK9|E Chain E, H55a Mutant Of Tryptophan 2,3-Dioxygenase From Xanthomonas
Campestris
pdb|3BK9|F Chain F, H55a Mutant Of Tryptophan 2,3-Dioxygenase From Xanthomonas
Campestris
pdb|3BK9|G Chain G, H55a Mutant Of Tryptophan 2,3-Dioxygenase From Xanthomonas
Campestris
pdb|3BK9|H Chain H, H55a Mutant Of Tryptophan 2,3-Dioxygenase From Xanthomonas
Campestris
Length = 306
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 40/75 (53%), Gaps = 3/75 (4%)
Query: 70 MYRDEPRFHLPSQILSALMDIDCCTAKWRHNHVLMVQRMIGSQHLGTGGTSGYQYLRSTL 129
+Y + R+ + L+D++ WR H+ V R+IG + GTGG+SG +L+ L
Sbjct: 209 IYENTDRYWREYSLCEDLVDVETQFQLWRFRHMRTVMRVIGFKR-GTGGSSGVGFLQQAL 267
Query: 130 SDRYKIFLDLFNVSS 144
+ F +LF+V +
Sbjct: 268 A--LTFFPELFDVRT 280
>pdb|3E08|A Chain A, H55s Mutant Xanthomonas Campestris Tryptophan 2,3-
Dioxygenase
pdb|3E08|B Chain B, H55s Mutant Xanthomonas Campestris Tryptophan 2,3-
Dioxygenase
pdb|3E08|C Chain C, H55s Mutant Xanthomonas Campestris Tryptophan 2,3-
Dioxygenase
pdb|3E08|D Chain D, H55s Mutant Xanthomonas Campestris Tryptophan 2,3-
Dioxygenase
pdb|3E08|E Chain E, H55s Mutant Xanthomonas Campestris Tryptophan 2,3-
Dioxygenase
pdb|3E08|F Chain F, H55s Mutant Xanthomonas Campestris Tryptophan 2,3-
Dioxygenase
pdb|3E08|G Chain G, H55s Mutant Xanthomonas Campestris Tryptophan 2,3-
Dioxygenase
pdb|3E08|H Chain H, H55s Mutant Xanthomonas Campestris Tryptophan 2,3-
Dioxygenase
Length = 298
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 40/75 (53%), Gaps = 3/75 (4%)
Query: 70 MYRDEPRFHLPSQILSALMDIDCCTAKWRHNHVLMVQRMIGSQHLGTGGTSGYQYLRSTL 129
+Y + R+ + L+D++ WR H+ V R+IG + GTGG+SG +L+ L
Sbjct: 209 IYENTDRYWREYSLCEDLVDVETQFQLWRFRHMRTVMRVIGFKR-GTGGSSGVGFLQQAL 267
Query: 130 SDRYKIFLDLFNVSS 144
+ F +LF+V +
Sbjct: 268 A--LTFFPELFDVRT 280
>pdb|2NW7|A Chain A, Crystal Structure Of Tryptophan 2,3-Dioxygenase (Tdo) From
Xanthomonas Campestris In Complex With Ferric Heme.
Northeast Structural Genomics Target Xcr13
pdb|2NW7|B Chain B, Crystal Structure Of Tryptophan 2,3-Dioxygenase (Tdo) From
Xanthomonas Campestris In Complex With Ferric Heme.
Northeast Structural Genomics Target Xcr13
pdb|2NW7|C Chain C, Crystal Structure Of Tryptophan 2,3-Dioxygenase (Tdo) From
Xanthomonas Campestris In Complex With Ferric Heme.
Northeast Structural Genomics Target Xcr13
pdb|2NW7|D Chain D, Crystal Structure Of Tryptophan 2,3-Dioxygenase (Tdo) From
Xanthomonas Campestris In Complex With Ferric Heme.
Northeast Structural Genomics Target Xcr13
pdb|2NW9|A Chain A, Crystal Structure Of Tryptophan 2,3-Dioxygenase (Tdo) From
Xanthomonas Campestris In Complex With Ferrous Heme And
6-Fluoro-Tryptophan. Northeast Structural Genomics
Target Xcr13
pdb|2NW9|B Chain B, Crystal Structure Of Tryptophan 2,3-Dioxygenase (Tdo) From
Xanthomonas Campestris In Complex With Ferrous Heme And
6-Fluoro-Tryptophan. Northeast Structural Genomics
Target Xcr13
pdb|2NW8|A Chain A, Crystal Structure Of Tryptophan 2,3-Dioxygenase (Tdo) From
Xanthomonas Campestris In Complex With Ferrous Heme And
Tryptophan. Northeast Structural Genomics Target Xcr13.
pdb|2NW8|B Chain B, Crystal Structure Of Tryptophan 2,3-Dioxygenase (Tdo) From
Xanthomonas Campestris In Complex With Ferrous Heme And
Tryptophan. Northeast Structural Genomics Target Xcr13
Length = 306
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 40/75 (53%), Gaps = 3/75 (4%)
Query: 70 MYRDEPRFHLPSQILSALMDIDCCTAKWRHNHVLMVQRMIGSQHLGTGGTSGYQYLRSTL 129
+Y + R+ + L+D++ WR H+ V R+IG + GTGG+SG +L+ L
Sbjct: 209 IYENTDRYWREYSLCEDLVDVETQFQLWRFRHMRTVMRVIGFKR-GTGGSSGVGFLQQAL 267
Query: 130 SDRYKIFLDLFNVSS 144
+ F +LF+V +
Sbjct: 268 A--LTFFPELFDVRT 280
>pdb|1YW0|A Chain A, Crystal Structure Of The Tryptophan 2,3-Dioxygenase From
Xanthomonas Campestris. Northeast Structural Genomics
Target Xcr13.
pdb|1YW0|B Chain B, Crystal Structure Of The Tryptophan 2,3-Dioxygenase From
Xanthomonas Campestris. Northeast Structural Genomics
Target Xcr13.
pdb|1YW0|C Chain C, Crystal Structure Of The Tryptophan 2,3-Dioxygenase From
Xanthomonas Campestris. Northeast Structural Genomics
Target Xcr13.
pdb|1YW0|D Chain D, Crystal Structure Of The Tryptophan 2,3-Dioxygenase From
Xanthomonas Campestris. Northeast Structural Genomics
Target Xcr13
Length = 276
Score = 41.2 bits (95), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 40/79 (50%), Gaps = 3/79 (3%)
Query: 66 ILITMYRDEPRFHLPSQILSALMDIDCCTAKWRHNHVLMVQRMIGSQHLGTGGTSGYQYL 125
+ +Y + R+ + L+D++ WR H V R+IG + GTGG+SG +L
Sbjct: 183 VFERIYENTDRYWREYSLCEDLVDVETQFQLWRFRHXRTVXRVIGFKR-GTGGSSGVGFL 241
Query: 126 RSTLSDRYKIFLDLFNVSS 144
+ L+ F +LF+V +
Sbjct: 242 QQALA--LTFFPELFDVRT 258
>pdb|3J1P|A Chain A, Atomic Model Of Rabbit Hemorrhagic Disease Virus
pdb|3J1P|B Chain B, Atomic Model Of Rabbit Hemorrhagic Disease Virus
pdb|3J1P|C Chain C, Atomic Model Of Rabbit Hemorrhagic Disease Virus
Length = 579
Score = 27.7 bits (60), Expect = 4.5, Method: Composition-based stats.
Identities = 17/47 (36%), Positives = 22/47 (46%)
Query: 105 VQRMIGSQHLGTGGTSGYQYLRSTLSDRYKIFLDLFNVSSFLLPKQY 151
V R G + G T+G QY + I L L N SS L+P Q+
Sbjct: 466 VVRRTGDVNAAAGSTNGTQYGTGSQPLPVTIGLSLNNYSSALMPGQF 512
>pdb|4EGT|A Chain A, Crystal Structure Of Major Capsid Protein P Domain From
Rabbit Hemorrhagic Disease Virus
pdb|4EGT|B Chain B, Crystal Structure Of Major Capsid Protein P Domain From
Rabbit Hemorrhagic Disease Virus
Length = 357
Score = 27.3 bits (59), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 22/48 (45%)
Query: 105 VQRMIGSQHLGTGGTSGYQYLRSTLSDRYKIFLDLFNVSSFLLPKQYI 152
V R G + G T+G QY + I L L N SS L+P Q+
Sbjct: 244 VVRRTGDVNAAAGSTNGTQYGTGSQPLPVTIGLSLNNYSSALMPGQFF 291
>pdb|2C47|A Chain A, Structure Of Casein Kinase 1 Gamma 2
pdb|2C47|B Chain B, Structure Of Casein Kinase 1 Gamma 2
pdb|2C47|C Chain C, Structure Of Casein Kinase 1 Gamma 2
pdb|2C47|D Chain D, Structure Of Casein Kinase 1 Gamma 2
Length = 313
Score = 26.9 bits (58), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 13/52 (25%)
Query: 122 YQYLRSTLSDRYKIFLDLFNVSSFLLPKQY------IPVLSGTLKSQLSATP 167
Y YLR K+F DLF+ S F+ +Y +P GT+ + L + P
Sbjct: 265 YDYLR-------KLFTDLFDRSGFVFDYEYDWAGKPLPTPIGTVHTDLPSQP 309
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.134 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,553,400
Number of Sequences: 62578
Number of extensions: 201975
Number of successful extensions: 341
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 332
Number of HSP's gapped (non-prelim): 10
length of query: 190
length of database: 14,973,337
effective HSP length: 93
effective length of query: 97
effective length of database: 9,153,583
effective search space: 887897551
effective search space used: 887897551
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 48 (23.1 bits)