Query psy306
Match_columns 190
No_of_seqs 150 out of 294
Neff 3.7
Searched_HMMs 46136
Date Sat Aug 17 00:39:38 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy306.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/306hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3906|consensus 100.0 1.7E-53 3.8E-58 378.6 7.6 151 15-166 237-387 (399)
2 PF03301 Trp_dioxygenase: Tryp 100.0 5E-44 1.1E-48 321.7 7.1 127 19-146 219-346 (346)
3 TIGR03036 trp_2_3_diox tryptop 100.0 5.6E-38 1.2E-42 274.3 12.6 119 23-146 134-264 (264)
4 COG3483 TDO2 Tryptophan 2,3-di 100.0 1.3E-35 2.9E-40 256.0 10.4 121 20-146 129-262 (262)
5 PF01231 IDO: Indoleamine 2,3- 91.8 0.29 6.3E-06 45.7 5.1 50 82-131 337-416 (422)
6 PF07014 Hs1pro-1_C: Hs1pro-1 48.0 80 0.0017 28.6 7.0 82 60-145 167-253 (261)
7 PF10135 Rod-binding: Rod bind 41.8 26 0.00056 23.1 2.3 22 33-54 18-39 (49)
8 PF00513 Late_protein_L2: Late 40.2 13 0.00028 35.9 0.9 37 90-127 36-72 (467)
9 KOG0681|consensus 33.1 25 0.00055 35.3 1.7 55 110-164 194-252 (645)
10 PF11817 Foie-gras_1: Foie gra 30.8 95 0.0021 26.5 4.6 57 90-153 26-85 (247)
11 PF04287 DUF446: tRNA pseudour 28.8 92 0.002 24.2 3.8 54 36-94 47-100 (100)
12 cd00243 Lysin-Sp18 Sp18 and Ly 21.8 4.4E+02 0.0095 21.4 8.4 106 38-171 14-121 (122)
No 1
>KOG3906|consensus
Probab=100.00 E-value=1.7e-53 Score=378.57 Aligned_cols=151 Identities=58% Similarity=0.974 Sum_probs=147.3
Q ss_pred cccchhhhhHHHHHHHHHHHHhhhhhhcHHHHHHHHHcCCCCCChHHHHHHHHHHHHhcCCCCCcHHHHHHHHHhHHHHH
Q psy306 15 LDAESESLQSCQIADYKKRKEMFQTIFDEDIHASLLSRGDRSLSHKALQGAILITMYRDEPRFHLPSQILSALMDIDCCT 94 (190)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~f~Sl~D~~~~~~L~~rG~r~~s~~al~~a~~i~vYrd~~~~~~l~~L~E~LvDiDe~~ 94 (190)
.+.+++++|.+++++++|++++|.||||+..|+.|+++|+|++|++|+++|+||++|||+|+|++||+|+..|||||.+|
T Consensus 237 ~~~~~~eek~~qlae~~K~~ev~~SifDp~~He~lir~G~RrlShrAlqGA~MIyFYRdePRFsqP~QlLT~LMDIDSL~ 316 (399)
T KOG3906|consen 237 ADPSNTEEKAKQLAEYHKTAEVFQSIFDPRQHEQLIRNGNRRLSHRALQGAMMIYFYRDEPRFSQPYQLLTFLMDIDSLF 316 (399)
T ss_pred hCCcchHHHHHHHHHHHHHHHHHHHhcChHHHHHHHhccchhhchhhhcCcEEEEEecCCCcccCcHHHHHHHHhHHHHH
Confidence 34567889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCCCchHHHHHHhhccccccchhhhhhhcccccCCCCCCCcHHHHhhcccC
Q psy306 95 AKWRHNHVLMVQRMIGSQHLGTGGTSGYQYLRSTLSDRYKIFLDLFNVSSFLLPKQYIPVLSGTLKSQLSAT 166 (190)
Q Consensus 95 ~~WR~rH~~mV~RmIG~~K~GTGGSSGv~YLr~tl~~rykvFPeLW~lRT~Lipr~~~P~l~~~~~~~L~~~ 166 (190)
++|||+|++||+||||+ |.||||||||.|||+|+++||+||.||||++|+||||++||+|+|+|+|+|+..
T Consensus 317 TKWRYNHV~mVqRMlGs-k~GTGGSSGY~YLRSTvSDRYKVFlDLFNLST~LIPRe~IP~l~pti~K~L~~~ 387 (399)
T KOG3906|consen 317 TKWRYNHVLMVQRMLGS-KQGTGGSSGYMYLRSTVSDRYKVFLDLFNLSTWLIPREYIPMLSPTIVKTLSEH 387 (399)
T ss_pred HHHhhhhhhhhHHhhcc-ccCCCCcchhhHHHhhhhhHHHHHHHHhhhhhhhccHhhcCCCCHHHHHHHHhh
Confidence 99999999999999999 999999999999999999999999999999999999999999999999999865
No 2
>PF03301 Trp_dioxygenase: Tryptophan 2,3-dioxygenase; InterPro: IPR004981 This is a family of tryptophan 2,3-dioxygenase (1.13.11.11 from EC) enzymes involved in tryptophan metabolism, which catalyse the reaction: L-Tryptophan + O(2) = L-Formylkynurenine ; GO: 0004833 tryptophan 2,3-dioxygenase activity, 0005506 iron ion binding, 0016491 oxidoreductase activity, 0019441 tryptophan catabolic process to kynurenine, 0055114 oxidation-reduction process; PDB: 2NW9_A 2NW7_C 1YW0_C 3BK9_C 3E08_B 2NW8_A 2NOX_A.
Probab=100.00 E-value=5e-44 Score=321.67 Aligned_cols=127 Identities=54% Similarity=0.862 Sum_probs=83.9
Q ss_pred hhhhhHH-HHHHHHHHHHhhhhhhcHHHHHHHHHcCCCCCChHHHHHHHHHHHHhcCCCCCcHHHHHHHHHhHHHHHHHH
Q psy306 19 SESLQSC-QIADYKKRKEMFQTIFDEDIHASLLSRGDRSLSHKALQGAILITMYRDEPRFHLPSQILSALMDIDCCTAKW 97 (190)
Q Consensus 19 ~~~~~~~-~~~~~~~~~~~f~Sl~D~~~~~~L~~rG~r~~s~~al~~a~~i~vYrd~~~~~~l~~L~E~LvDiDe~~~~W 97 (190)
++++++. ..+++++.+++|+|+||++.|+.+..+|+|++|++|+++|+||+||++++++++||+|||+|+|||+.|++|
T Consensus 219 ~~~~~~~~l~~~y~~~~~v~~a~fd~~~~~~~~~~g~rr~s~~A~~~a~~i~~Yr~~~~~~~~~~l~e~L~d~de~~~~W 298 (346)
T PF03301_consen 219 PEEELERDLSAEYEKNKEVFDAWFDEEKHEALLARGERRLSHKALQGALFIEVYRDEPRFWDLYQLAEALVDIDELFQRW 298 (346)
T ss_dssp -HHHHSS-TTS-----HHHHHHHHH--------------------------HHHHTCCCTHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHhhcccCHHHHHHHHHhcccccccccccccccccccccccccCCCCCCccccHHHHHHHHHHHHHHHHHHH
Confidence 4444444 449999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCCCCCchHHHHHHhhccccccchhhhhhhccc
Q psy306 98 RHNHVLMVQRMIGSQHLGTGGTSGYQYLRSTLSDRYKIFLDLFNVSSFL 146 (190)
Q Consensus 98 R~rH~~mV~RmIG~~K~GTGGSSGv~YLr~tl~~rykvFPeLW~lRT~L 146 (190)
|++|++||+||||+ |+|||||||++||++|++.+|+||||||++||+|
T Consensus 299 R~~H~~~v~R~iG~-k~GTGGssG~~yL~~t~~~~~~~FpeLw~~rt~l 346 (346)
T PF03301_consen 299 RYRHVKMVERMIGS-KPGTGGSSGVDYLRRTVSLRYRFFPELWNLRTFL 346 (346)
T ss_dssp HHHHHHHHHHHCTT-S-STTSSSCHHHHHH--HHC--SSHHHHHHHHT-
T ss_pred HHHHHHHHHHHhcC-CCCCCCCChHHHHHHhhccccCcCHHHHhhhcCC
Confidence 99999999999999 9999999999999998888889999999999986
No 3
>TIGR03036 trp_2_3_diox tryptophan 2,3-dioxygenase. Members of this family are tryptophan 2,3-dioxygenase, as confirmed by several experimental characterizations, and by conserved operon structure for many of the other members. This enzyme represents the first of a two-step degradation to L-kynurenine, and a three-step pathway (via kynurenine) to anthranilate plus alanine.
Probab=100.00 E-value=5.6e-38 Score=274.26 Aligned_cols=119 Identities=28% Similarity=0.462 Sum_probs=104.0
Q ss_pred hHHHHHHHHHHHHhhhhhhcHHHHHHHHHcCCCCC--------C----hHHHHHHHHHHHHhcCCCCCcHHHHHHHHHhH
Q psy306 23 QSCQIADYKKRKEMFQTIFDEDIHASLLSRGDRSL--------S----HKALQGAILITMYRDEPRFHLPSQILSALMDI 90 (190)
Q Consensus 23 ~~~~~~~~~~~~~~f~Sl~D~~~~~~L~~rG~r~~--------s----~~al~~a~~i~vYrd~~~~~~l~~L~E~LvDi 90 (190)
.++..+.+++..+- |||||+.+. .|+++|...+ + +++.++|+|++||+++++++++|+|||+|+||
T Consensus 134 ~p~~~~~L~~~l~~-PSLyd~~l~-~L~r~G~~vp~~~l~rd~~~~~~~~~~v~~~w~~vY~~~~~~~~ly~L~E~L~di 211 (264)
T TIGR03036 134 DPELHAELEAALHA-PSLYDEALR-LLARRGFPIPAEVLERDWTQPYEPNPEVEAAWLEVYRDPDRYWELYELAEKLVDL 211 (264)
T ss_pred ChHHHHHHHHHhcC-CCHHHHHHH-HHHHcCCCCcHHHHhccccccccccHHHHHHHHHHhcCcccccHHHHHHHHHHHH
Confidence 34455566666666 999999999 9999995433 2 24444479999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCCCCchHHHHHHhhccccccchhhhhhhccc
Q psy306 91 DCCTAKWRHNHVLMVQRMIGSQHLGTGGTSGYQYLRSTLSDRYKIFLDLFNVSSFL 146 (190)
Q Consensus 91 De~~~~WR~rH~~mV~RmIG~~K~GTGGSSGv~YLr~tl~~rykvFPeLW~lRT~L 146 (190)
|+.|++||++|++||+||||. |+|||||||++||+++++. +||||||++||.|
T Consensus 212 de~f~~WR~rH~~~VeR~IG~-K~GTGGSsG~~yLr~~l~~--~~FPeLw~~rt~l 264 (264)
T TIGR03036 212 EDLFRQWRFRHLTTVERIIGF-KRGTGGSSGVAYLKKMLDV--VLFPELWTVRTEL 264 (264)
T ss_pred HHHHHHHHHHHHHHHHHHhcC-CCCCCCCccHHHHHHhccC--ccCHHHHhhhccC
Confidence 999999999999999999999 9999999999999999976 5999999999976
No 4
>COG3483 TDO2 Tryptophan 2,3-dioxygenase (vermilion) [Amino acid transport and metabolism]
Probab=100.00 E-value=1.3e-35 Score=255.99 Aligned_cols=121 Identities=35% Similarity=0.595 Sum_probs=111.5
Q ss_pred hhhhHHHHHHHHHHHHhhhhhhcHHHHHHHHHcC--------CCCCC-----hHHHHHHHHHHHHhcCCCCCcHHHHHHH
Q psy306 20 ESLQSCQIADYKKRKEMFQTIFDEDIHASLLSRG--------DRSLS-----HKALQGAILITMYRDEPRFHLPSQILSA 86 (190)
Q Consensus 20 ~~~~~~~~~~~~~~~~~f~Sl~D~~~~~~L~~rG--------~r~~s-----~~al~~a~~i~vYrd~~~~~~l~~L~E~ 86 (190)
..++.+.++.++...+. ||+||+++. .|+++| +|+++ .++|+ |+|.+||||+.+||++|+|+|+
T Consensus 129 H~hR~e~~~~L~aal~~-pslydeair-llar~g~~v~ae~~~rD~~~~~~~~e~V~-aAw~evYrdp~~yW~lyeLaEk 205 (262)
T COG3483 129 HKHRAELLARLKAALET-PSLYDEAIR-LLARQGLDVGAEALERDWSATYTTNEAVE-AAWLEVYRDPQRYWELYELAEK 205 (262)
T ss_pred cccCHHHHHHHHHHhcC-CccHHHHHH-HHHhcCCCCcHHHHhcccccccccCHHHH-HHHHHHHhCHHHHhHHHHHHHH
Confidence 46788999999999999 999999999 999999 56664 37777 5899999999999999999999
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCchHHHHHHhhccccccchhhhhhhccc
Q psy306 87 LMDIDCCTAKWRHNHVLMVQRMIGSQHLGTGGTSGYQYLRSTLSDRYKIFLDLFNVSSFL 146 (190)
Q Consensus 87 LvDiDe~~~~WR~rH~~mV~RmIG~~K~GTGGSSGv~YLr~tl~~rykvFPeLW~lRT~L 146 (190)
|+|+++.|.+||++|+.||+|+||. |+||||||||+||+++++- .+|||||.+||.|
T Consensus 206 lvdled~fr~WRfrHvttVERiIG~-k~GTGGTsGv~YL~~~L~~--~lFpeLW~vRt~L 262 (262)
T COG3483 206 LVDLEDSFRRWRFRHVTTVERIIGF-KRGTGGTSGVGYLRSMLDV--VLFPELWTVRTLL 262 (262)
T ss_pred HHhHHHHHHHHHHHhHHHHHHHhcC-CCCCCCcchHHHHHHHhHH--hhhHHHHHHhccC
Confidence 9999999999999999999999999 9999999999999999855 5999999999965
No 5
>PF01231 IDO: Indoleamine 2,3-dioxygenase; InterPro: IPR000898 Indoleamine 2,3-dioxgyenase (IDO, 1.13.11.42 from EC) [] is a cytosolic haem protein which, together with the hepatic enzyme tryptophan 2,3-dioxygenase, catalyzes the conversion of tryptophan and other indole derivatives to kynurenines. The physiological role of IDO is not fully understood but is of great interest, because IDO is widely distributed in human tissues, can be up-regulated via cytokines such as interferon-gamma, and can thereby modulate the levels of tryptophan, which is vital for cell growth. The degradative action of IDO on tryptophan leads to cell death by starvation of this essential and relatively scarce amino acid. IDO is a haem-containing enzyme of about 400 amino acids. Site-directed mutagenesis showed His346 (P14902 from SWISSPROT) to be essential for haem binding, indicating that this histidine residue may be the proximal ligand. Mutation of Asp274 also compromised the ability of IDO to bind haem, suggesting that Asp274 may coordinate to haem directly as the distal ligand or is essential in maintaining the conformation of the haem pocket []. Other proteins that are evolutionarily related to IDO include yeast hypothetical protein YJR078w; and myoglobin from the red muscle of the archaeogastropodic molluscs, Nordotis madaka (Giant abalone) and Sulculus diversicolor [, ]. These unusual globins lack enzymatic activity but have kept the haem group.; GO: 0020037 heme binding; PDB: 2D0U_A 2D0T_A.
Probab=91.76 E-value=0.29 Score=45.73 Aligned_cols=50 Identities=24% Similarity=0.334 Sum_probs=37.4
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHhc----CC--------------------------CCCCCCCchHHHHHHhhcc
Q psy306 82 QILSALMDIDCCTAKWRHNHVLMVQRMIG----SQ--------------------------HLGTGGTSGYQYLRSTLSD 131 (190)
Q Consensus 82 ~L~E~LvDiDe~~~~WR~rH~~mV~RmIG----~~--------------------------K~GTGGSSGv~YLr~tl~~ 131 (190)
+|.++--+.=+.+..||..|.++|.|-|= .. ..|||||+=..||++.-+.
T Consensus 337 ~l~~aYn~~v~aL~~fR~~H~~iv~~YIi~pa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GTGGT~l~~fLK~~Rd~ 416 (422)
T PF01231_consen 337 ELREAYNACVDALKEFRDAHIQIVTRYIIQPARKAPPMGSSPSVTWAAASAASSSKSSSLELKGTGGTDLMPFLKQCRDE 416 (422)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHT---------------------------------THHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCccccccccchhhhhcccccCCCCCCCccCCchhHHHHHHHHHHH
Confidence 78888888889999999999999999881 10 1499999999999987543
No 6
>PF07014 Hs1pro-1_C: Hs1pro-1 protein C-terminus; InterPro: IPR009743 This entry represents the C terminus (approximately 270 residues) of a number of plant Hs1pro-1 proteins, which are believed to confer nematode resistance [].
Probab=48.00 E-value=80 Score=28.59 Aligned_cols=82 Identities=18% Similarity=0.332 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHHhcCCCCCcHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCCCCCCC-----CchHHHHHHhhccccc
Q psy306 60 KALQGAILITMYRDEPRFHLPSQILSALMDIDCCTAKWRHNHVLMVQRMIGSQHLGTGG-----TSGYQYLRSTLSDRYK 134 (190)
Q Consensus 60 ~al~~a~~i~vYrd~~~~~~l~~L~E~LvDiDe~~~~WR~rH~~mV~RmIG~~K~GTGG-----SSGv~YLr~tl~~ryk 134 (190)
+.+|.| -..+|+.-..+. --.|++++-.|+.++.++=|.--++|.=|+|+.. ..|+ ++|.+-|....-.. +
T Consensus 167 PriqEA-aMkLy~~~~~~e-kihLLQa~QavE~a~krFff~YkQlv~~vMGS~E-a~~~~~~~~~~~~D~Lsq~flEP-t 242 (261)
T PF07014_consen 167 PRIQEA-AMKLYRRKGEFE-KIHLLQAFQAVEVAVKRFFFAYKQLVVAVMGSSE-AKGNRVLFSIESADSLSQIFLEP-T 242 (261)
T ss_pred chHHHH-HHHHHHHcCCcc-eeHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchh-hcCCcccccccccchHHHHhcCC-C
Confidence 677874 456787766655 4478999999999999999999999999999833 2222 24555554433222 3
Q ss_pred cchhhhhhhcc
Q psy306 135 IFLDLFNVSSF 145 (190)
Q Consensus 135 vFPeLW~lRT~ 145 (190)
+||.|=.+.||
T Consensus 243 YfPSLDaAKTF 253 (261)
T PF07014_consen 243 YFPSLDAAKTF 253 (261)
T ss_pred CCCchhHHHHH
Confidence 45544443333
No 7
>PF10135 Rod-binding: Rod binding protein; InterPro: IPR019301 The N-terminal domain of the FlgJ protein is directly involved in flagellar rod assembly, while the adjacent C-terminal domain is a flagellum-specific muramidase (peptidoglycan hydrolase) required for formation of the outer membrane L ring [].
Probab=41.80 E-value=26 Score=23.09 Aligned_cols=22 Identities=23% Similarity=0.610 Sum_probs=19.7
Q ss_pred HHHhhhhhhcHHHHHHHHHcCC
Q psy306 33 RKEMFQTIFDEDIHASLLSRGD 54 (190)
Q Consensus 33 ~~~~f~Sl~D~~~~~~L~~rG~ 54 (190)
..++|.++||+++.+.++.+|-
T Consensus 18 ~~~~~~~m~d~~la~~~a~~gg 39 (49)
T PF10135_consen 18 GEDMFQSMLDQQLAKEMAKSGG 39 (49)
T ss_pred HHHHHHHHHHHHHHHHHHHcCC
Confidence 5789999999999999998874
No 8
>PF00513 Late_protein_L2: Late Protein L2; InterPro: IPR000784 This family includes the L2 minor capsid protein, a late protein from Human papillomavirus (HPV). HPV are dsDNA viruses with no RNA stage in their replication cycle. Their dsDNA is contained within a capsid composed of 72 L1 capsomers and about 36 L2 minor capsid proteins. L2 minor capsid proteins enter the nucleus twice during infection: in the initial phase after virion disassembly, and in the productive phase when it assembles into replicated virions along with L1 major capsid proteins. L2 proteins contain two nuclear localisation signals (NLSs), one at the N-terminal (nNLS) and the other at the C-terminal (cNLS). L2 uses its NLSs to interact with a network of karyopherins in order to enter the nucleus via several import pathways. L2 from HPV types 11 and 16 was shown to interact with karyopherins Kapbeta(2) and Kapbeta(3) [, ]. L2 capsid proteins can also interact with viral dsDNA, facilitating its release from the endocytic compartment after viral uncoating. ; GO: 0005198 structural molecule activity, 0019028 viral capsid
Probab=40.16 E-value=13 Score=35.85 Aligned_cols=37 Identities=30% Similarity=0.478 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCCCCCchHHHHHH
Q psy306 90 IDCCTAKWRHNHVLMVQRMIGSQHLGTGGTSGYQYLRS 127 (190)
Q Consensus 90 iDe~~~~WR~rH~~mV~RmIG~~K~GTGGSSGv~YLr~ 127 (190)
+++.+.+|=-.=+-.=-==||.|| ||||+.||-=|..
T Consensus 36 ~ADkILk~gSs~vyfGGLGIGTG~-GsGG~~GY~Plg~ 72 (467)
T PF00513_consen 36 LADKILKWGSSGVYFGGLGIGTGR-GSGGRTGYVPLGG 72 (467)
T ss_pred HHHHHHHhhhhhheecccccccCC-CcCCCCccccCCC
Confidence 455666665443333333478866 9999998766654
No 9
>KOG0681|consensus
Probab=33.07 E-value=25 Score=35.28 Aligned_cols=55 Identities=22% Similarity=0.339 Sum_probs=40.3
Q ss_pred cCCCCCCCCCchHHHHHHhhccccccchhhhhhhc---ccccCCC-CCCCcHHHHhhcc
Q psy306 110 GSQHLGTGGTSGYQYLRSTLSDRYKIFLDLFNVSS---FLLPKQY-IPVLSGTLKSQLS 164 (190)
Q Consensus 110 G~~K~GTGGSSGv~YLr~tl~~rykvFPeLW~lRT---~Lipr~~-~P~l~~~~~~~L~ 164 (190)
+.+|..-||+.-++||.+.+..+|++||--+..+- .+.+--+ -|.-..++.+.|.
T Consensus 194 ~~kRiN~GG~qa~dYL~~Lmq~Kyp~~~~~~t~sk~E~l~~eHcyis~DY~eei~~~l~ 252 (645)
T KOG0681|consen 194 DVKRINWGGYQAGDYLSRLMQLKYPFHLNAFTGSKAERLLHEHCYISPDYREEIIKILE 252 (645)
T ss_pred cceeeccCcchHHHHHHHHHhccCccchhhcCHHHHHHHhhhhceeCcchHHHHHHHhh
Confidence 45577889999999999999999999997766542 2333322 2556777777773
No 10
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=30.77 E-value=95 Score=26.49 Aligned_cols=57 Identities=14% Similarity=0.299 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCCCC--CchH-HHHHHhhccccccchhhhhhhcccccCCCCC
Q psy306 90 IDCCTAKWRHNHVLMVQRMIGSQHLGTGG--TSGY-QYLRSTLSDRYKIFLDLFNVSSFLLPKQYIP 153 (190)
Q Consensus 90 iDe~~~~WR~rH~~mV~RmIG~~K~GTGG--SSGv-~YLr~tl~~rykvFPeLW~lRT~Lipr~~~P 153 (190)
.-+++.+|| .|+.-+..++|. + |-|. ..|. .|+.+ .|.+|-||.+....-.+...-+
T Consensus 26 ~~~Av~q~~-~H~~~~~~~~~~-~-g~g~~~~~~~~aW~sr----q~~~fAeL~~~~~~~~l~~~~~ 85 (247)
T PF11817_consen 26 PTEAVRQFR-AHIDRFKDIVGR-R-GKGTLAFEHWQAWESR----QYQVFAELLEEAPISGLTPPST 85 (247)
T ss_pred HHHHHHHHH-HHHHHHHhhcCC-C-CCCccchhhHHHHHHH----HHHHHHHHHHhcccccCCCCCC
Confidence 347888887 688889999986 3 4333 3455 66644 4568999999776444443333
No 11
>PF04287 DUF446: tRNA pseudouridine synthase C; InterPro: IPR007384 This family includes an N-terminal region of unknown function from the Erwinia carotovora exoenzyme regulation regulon orf1 protein, which also contains a domain found in RNA pseudouridylate synthase IPR006145 from INTERPRO.; PDB: 2HGK_A.
Probab=28.85 E-value=92 Score=24.25 Aligned_cols=54 Identities=15% Similarity=0.186 Sum_probs=35.5
Q ss_pred hhhhhhcHHHHHHHHHcCCCCCChHHHHHHHHHHHHhcCCCCCcHHHHHHHHHhHHHHH
Q psy306 36 MFQTIFDEDIHASLLSRGDRSLSHKALQGAILITMYRDEPRFHLPSQILSALMDIDCCT 94 (190)
Q Consensus 36 ~f~Sl~D~~~~~~L~~rG~r~~s~~al~~a~~i~vYrd~~~~~~l~~L~E~LvDiDe~~ 94 (190)
+..=||=+..+ .|+..|..-++.-++-. ....+|++. .....|.+.|-+||+.+
T Consensus 47 WLQwVFiPrm~-~lie~~~pLP~~~~iaP-~aee~~k~~---~~~~~ll~~L~~lD~l~ 100 (100)
T PF04287_consen 47 WLQWVFIPRMR-ALIEQGQPLPTSFAIAP-YAEEAWKGQ---PEYAPLLELLRQLDELL 100 (100)
T ss_dssp HHTTTHHHHHH-HHHHTT----TT---HH-HHHHHS-T----TTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-HHHHcCCCCCccccHHH-HHHHHHccC---ccHHHHHHHHHHHHhhC
Confidence 34458889999 89999987777777764 788888865 45668999999999875
No 12
>cd00243 Lysin-Sp18 Sp18 and Lysin from Archaegastropoda (marine mollusks of the families Halotidae and Trochidae) sperm. Both proteins play an important role in fertilization: sp18 mediates fusion between sperm and egg cell membrane, lysin dissolves the vitelline envelope surrounding the egg; they are believed to be a product of gene duplication and subsequent divergence.
Probab=21.83 E-value=4.4e+02 Score=21.38 Aligned_cols=106 Identities=24% Similarity=0.345 Sum_probs=65.1
Q ss_pred hhhhcHHHHHHHHHcCCCCCChHHHHHHHHHHHHhcCCCCCcHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCCCCCC
Q psy306 38 QTIFDEDIHASLLSRGDRSLSHKALQGAILITMYRDEPRFHLPSQILSALMDIDCCTAKWRHNHVLMVQRMIGSQHLGTG 117 (190)
Q Consensus 38 ~Sl~D~~~~~~L~~rG~r~~s~~al~~a~~i~vYrd~~~~~~l~~L~E~LvDiDe~~~~WR~rH~~mV~RmIG~~K~GTG 117 (190)
=.-||..+...+.++|. .+|..... .+..+=|. .+++|=.+=+.-+.+.|- +.|--
T Consensus 14 i~~~D~kl~~~~r~h~~-~l~~~q~~--~l~fvNRr-------------------~m~t~w~ny~~w~~k~I~--~lgR~ 69 (122)
T cd00243 14 IAGLDRKLDKWLRRHGD-RLSPPQKK--TLYFVNRR-------------------RMQTHWQNYMLWSKKIIR--KLGRP 69 (122)
T ss_pred HHHHHHHHHHHHHHcCC-ccchhHHH--HHHHHHHH-------------------HHHHHHHHHHHHHHHHHH--HhCCC
Confidence 34578888888888887 45554444 34444332 222222333444555552 22222
Q ss_pred CC-chHHHHHHhhccccccchhhhhhhcccccCCCCCCCcHHHHhhcccCCC-CCC
Q psy306 118 GT-SGYQYLRSTLSDRYKIFLDLFNVSSFLLPKQYIPVLSGTLKSQLSATPH-HPR 171 (190)
Q Consensus 118 GS-SGv~YLr~tl~~rykvFPeLW~lRT~Lipr~~~P~l~~~~~~~L~~~~~-~~~ 171 (190)
-+ .-+.-|-+.+..| ++ +--.=++++-+..+|.+++.|.+.|..... .|.
T Consensus 70 p~~~dy~~~Gr~iGrr--~~--m~~~Y~~~vr~n~~pk~~p~m~kl~a~~~~dlPv 121 (122)
T cd00243 70 PNVKDYTRLGREIGRR--IY--MEHLYSFLVRRNRRPKLTPYMRKLLATRPADLPV 121 (122)
T ss_pred CchhHHHHHHHHHhhh--cc--HHHHHHHHHHHhccccCCHHHHHHhcCCcccCCC
Confidence 22 2367777888776 44 444667888899999999999999997743 664
Done!