Query psy306
Match_columns 190
No_of_seqs 150 out of 294
Neff 3.7
Searched_HMMs 29240
Date Sat Aug 17 00:40:04 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy306.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/306hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2nw8_A Tryptophan 2,3-dioxygen 100.0 2.7E-34 9.1E-39 253.2 13.6 126 24-156 153-291 (306)
2 2nox_A Tryptophan 2,3-dioxygen 100.0 1.6E-34 5.3E-39 252.4 11.9 118 23-146 151-281 (281)
3 2d0t_A Indoleamine 2,3-dioxyge 99.3 4.5E-12 1.6E-16 114.8 7.0 82 32-131 297-397 (406)
4 2v7k_A PRNB; IDO, TDO, biosynt 93.3 0.11 3.6E-06 46.7 5.4 50 81-131 293-346 (361)
5 1zee_A Hypothetical protein SO 79.5 0.6 2.1E-05 42.8 1.4 66 83-160 299-385 (403)
6 2lis_A Sperm lysin; abalone ly 50.8 72 0.0025 25.2 7.8 107 38-172 24-132 (136)
7 2hgk_A Hypothetical protein YQ 23.8 1.2E+02 0.004 23.2 4.8 56 36-95 50-105 (117)
8 3lyn_A Sperm lysin; abalone ly 22.6 54 0.0018 26.1 2.7 105 40-172 26-132 (136)
9 2ke4_A CDC42-interacting prote 22.3 2E+02 0.0069 21.0 5.7 43 59-103 38-80 (98)
10 2cue_A Paired box protein PAX6 18.9 2.2E+02 0.0075 19.0 6.9 65 54-121 11-80 (80)
No 1
>2nw8_A Tryptophan 2,3-dioxygenase; all alpha-helical protein, structural genomics, PSI-2, prote structure initiative; HET: TRP HEM; 1.60A {Xanthomonas campestris PV} SCOP: a.266.1.1 PDB: 2nw7_A* 2nw9_A* 3bk9_A* 3e08_A* 1yw0_A
Probab=100.00 E-value=2.7e-34 Score=253.24 Aligned_cols=126 Identities=25% Similarity=0.440 Sum_probs=105.8
Q ss_pred HHHHHHHHHHHHhhhhhhcHHHHHHHHHcCC--------CCC-----ChHHHHHHHHHHHHhcCCCCCcHHHHHHHHHhH
Q psy306 24 SCQIADYKKRKEMFQTIFDEDIHASLLSRGD--------RSL-----SHKALQGAILITMYRDEPRFHLPSQILSALMDI 90 (190)
Q Consensus 24 ~~~~~~~~~~~~~f~Sl~D~~~~~~L~~rG~--------r~~-----s~~al~~a~~i~vYrd~~~~~~l~~L~E~LvDi 90 (190)
++..+.+++...- +||||+.+. .|.++|. |++ +..+++ ++|+.||+++++++++|+|+|+|+||
T Consensus 153 p~~~~~l~~~~~~-pSL~d~~~~-~L~r~G~~~~~~~l~rd~~~~y~~~~~v~-~~~~~vY~~~~~~~~~~~L~eaL~di 229 (306)
T 2nw8_A 153 PAGQARLREVLEA-PSLYEEFLR-YLARFGHAIPQQYQARDWTAAHVADDTLR-PVFERIYENTDRYWREYSLCEDLVDV 229 (306)
T ss_dssp HHHHHHHHHHHTS-CCHHHHHHH-HHHHTTCCCCGGGGSCCTTSCCCCCGGGH-HHHHHHHHCTTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcC-CCHHHHHHH-HHHHcCCCcchhhhhhhhhhccCCCHHHH-HHHHHHhcCCcccccHHHHHHHHHHH
Confidence 3445555555444 999999998 9999994 444 236777 59999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCCCCchHHHHHHhhccccccchhhhhhhcccccCCCCCCCc
Q psy306 91 DCCTAKWRHNHVLMVQRMIGSQHLGTGGTSGYQYLRSTLSDRYKIFLDLFNVSSFLLPKQYIPVLS 156 (190)
Q Consensus 91 De~~~~WR~rH~~mV~RmIG~~K~GTGGSSGv~YLr~tl~~rykvFPeLW~lRT~Lipr~~~P~l~ 156 (190)
|+.|++||++|++||+||||+ |+|||||||++||+++++. +||||||++||+|.. +.+|++.
T Consensus 230 d~~~~~WR~~H~~~v~R~IG~-k~GTGGSsG~~yL~~~~~~--~~FPeLw~~rt~L~~-~~~p~~~ 291 (306)
T 2nw8_A 230 ETQFQLWRFRHMRTVMRVIGF-KRGTGGSSGVGFLQQALAL--TFFPELFDVRTSVGV-DNRPPQG 291 (306)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT-CCCSSSSCTHHHHHHHTTC--CSCHHHHHGGGTTTC-CC-----
T ss_pred HHHHHHHHHHHHHHHHHHhCC-CCCCCCcchHHHHHHhcCC--CcCHHHHHHHhhccc-CCCCCCC
Confidence 999999999999999999999 9999999999999999976 599999999999854 7788764
No 2
>2nox_A Tryptophan 2,3-dioxygenase; helical bundle, heme protein, oxidoreductase; HET: HEM; 2.40A {Cupriavidus metallidurans}
Probab=100.00 E-value=1.6e-34 Score=252.38 Aligned_cols=118 Identities=26% Similarity=0.466 Sum_probs=104.0
Q ss_pred hHHHHHHHHHHHHhhhhhhcHHHHHHHHHcCC--------CCC-----ChHHHHHHHHHHHHhcCCCCCcHHHHHHHHHh
Q psy306 23 QSCQIADYKKRKEMFQTIFDEDIHASLLSRGD--------RSL-----SHKALQGAILITMYRDEPRFHLPSQILSALMD 89 (190)
Q Consensus 23 ~~~~~~~~~~~~~~f~Sl~D~~~~~~L~~rG~--------r~~-----s~~al~~a~~i~vYrd~~~~~~l~~L~E~LvD 89 (190)
.+...+++++..+- +|+||+.+. .|.++|. |++ +..++. ++|+.||+++++++++|+|+|+|+|
T Consensus 151 ~p~~~~~l~~~~~~-pSL~d~~~~-~L~r~G~~~~~~~l~rd~~~~y~~~~~v~-~~~~~vy~~~~~~~~~~~L~e~L~d 227 (281)
T 2nox_A 151 RPEHLELVETALHT-PSMYDEAIR-LMARRGFQIDPEVVERDWTQPTQYNASVE-AAWLEVYRNPSAHWELYELGEKFVD 227 (281)
T ss_dssp CHHHHHHHHHHHHS-CCHHHHHHH-HHHHTTCCCCHHHHSCCTTSCCCCCHHHH-HHHHHHHHSGGGGHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhcC-CCHHHHHHH-HHHHcCCCCchhhhhhhhhhccCccHHHH-HHHHHHhcCccccccHHHHHHHHHH
Confidence 34555666666555 999999998 9999994 444 346776 6999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCCCCCchHHHHHHhhccccccchhhhhhhccc
Q psy306 90 IDCCTAKWRHNHVLMVQRMIGSQHLGTGGTSGYQYLRSTLSDRYKIFLDLFNVSSFL 146 (190)
Q Consensus 90 iDe~~~~WR~rH~~mV~RmIG~~K~GTGGSSGv~YLr~tl~~rykvFPeLW~lRT~L 146 (190)
+|+.|++||++|++||+||||. |+|||||||++||++++++ +||||||++||+|
T Consensus 228 ~d~~~~~WR~~H~~~v~R~IG~-k~GTGGSsG~~yL~~~~~~--~~FPeLw~~rt~l 281 (281)
T 2nox_A 228 LEDAFRQWRFRHVTTVERVIGF-KRGTGGTEGVSYLRRMLDV--VLFPELWKLRTDL 281 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT-CCCTTSSCTHHHHHHHTTC--CSSHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHhCC-CCCCCCCchHHHHHHhccC--CcCHHHHHHhccC
Confidence 9999999999999999999999 9999999999999999986 5999999999976
No 3
>2d0t_A Indoleamine 2,3-dioxygenase; helix bundle, riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: HEM PIM NHE; 2.30A {Homo sapiens} SCOP: a.266.1.2 PDB: 2d0u_A*
Probab=99.27 E-value=4.5e-12 Score=114.79 Aligned_cols=82 Identities=21% Similarity=0.204 Sum_probs=62.4
Q ss_pred HHHHhhhhhhcHHHHHHHHHcCCCCCChHHHHHHHHHHHHhcCCCCCcHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhc-
Q psy306 32 KRKEMFQTIFDEDIHASLLSRGDRSLSHKALQGAILITMYRDEPRFHLPSQILSALMDIDCCTAKWRHNHVLMVQRMIG- 110 (190)
Q Consensus 32 ~~~~~f~Sl~D~~~~~~L~~rG~r~~s~~al~~a~~i~vYrd~~~~~~l~~L~E~LvDiDe~~~~WR~rH~~mV~RmIG- 110 (190)
..++-.|+.+++.+. +|.++| + ++..+. . .. + -+|+|++.++.+.|+.||.+|+++|+|.||
T Consensus 297 ~mr~ymP~~hr~fL~-~l~~~~----~---vr~~v~-----~-~~--~-~~L~ea~~~~~~~l~~fR~~Hi~~V~ryI~~ 359 (406)
T 2d0t_A 297 DMRRYMPPAHRNFLC-SLESNP----S---VREFVL-----S-KG--D-AGLREAYDACVKALVSLRSYHLQIVTKYILI 359 (406)
T ss_dssp HHGGGSCHHHHHHHH-HHHTSC----C---HHHHHH-----T-TC--C-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTHH
T ss_pred HHHhhCCchHHHHHH-HHHhcC----C---cccccc-----C-CC--C-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 344558999999999 999988 2 232122 1 11 1 289999999999999999999999999999
Q ss_pred ------------------CCCCCCCCCchHHHHHHhhcc
Q psy306 111 ------------------SQHLGTGGTSGYQYLRSTLSD 131 (190)
Q Consensus 111 ------------------~~K~GTGGSSGv~YLr~tl~~ 131 (190)
. +.|||||+|+.||+++.+.
T Consensus 360 ~a~~~~~~~~~~~~~~~~~-~~GTGGT~~v~fLk~~rd~ 397 (406)
T 2d0t_A 360 PASQQPKENKTSEDPSKLE-AKGTGGTDLMNFLKTVRST 397 (406)
T ss_dssp HHTC--------------------CTHHHHHHHHHHHHH
T ss_pred ccccccccccccccccCCC-CCcCCCccHHHHHHHHHHH
Confidence 6 8999999999999999866
No 4
>2v7k_A PRNB; IDO, TDO, biosynthetic protein; HET: HEM DTR; 1.70A {Pseudomonas fluorescens} PDB: 2v7j_A* 2v7i_A* 2v7l_A* 2v7m_A* 2x66_A* 2x67_A* 2x68_A*
Probab=93.27 E-value=0.11 Score=46.71 Aligned_cols=50 Identities=22% Similarity=0.280 Sum_probs=35.8
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHH-HhcC---CCCCCCCCchHHHHHHhhcc
Q psy306 81 SQILSALMDIDCCTAKWRHNHVLMVQR-MIGS---QHLGTGGTSGYQYLRSTLSD 131 (190)
Q Consensus 81 ~~L~E~LvDiDe~~~~WR~rH~~mV~R-mIG~---~K~GTGGSSGv~YLr~tl~~ 131 (190)
-++.++.-.+=+.+..||..|.++|.| -|-. ...|||||+= .||++..+.
T Consensus 293 ~~l~~ay~~~v~~l~~fR~~H~~iV~~~YIv~~s~~~~GTGGt~l-~fLk~~rd~ 346 (361)
T 2v7k_A 293 RAGLTALERVFKVLLRFRAPHLKLAERAYEVGQSGPEIGSGGYAP-SMLGELLTL 346 (361)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC------------CC-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHeeccCCCCCCCCCCCH-HHHHHHHHH
Confidence 478888888999999999999999999 8842 1569999997 999987654
No 5
>1zee_A Hypothetical protein SO4414; all alpha-protein., structural genomics, PSI, protein struct initiative; 2.31A {Shewanella oneidensis} SCOP: a.266.1.2 PDB: 2nwb_A*
Probab=79.52 E-value=0.6 Score=42.82 Aligned_cols=66 Identities=14% Similarity=-0.009 Sum_probs=34.4
Q ss_pred HHHHHHhHHHHHHH--------HHHHHHHHHHHHhc----------CCCCCCCCCch---HHHHHHhhccccccchhhhh
Q psy306 83 ILSALMDIDCCTAK--------WRHNHVLMVQRMIG----------SQHLGTGGTSG---YQYLRSTLSDRYKIFLDLFN 141 (190)
Q Consensus 83 L~E~LvDiDe~~~~--------WR~rH~~mV~RmIG----------~~K~GTGGSSG---v~YLr~tl~~rykvFPeLW~ 141 (190)
+.++.-..=..+.. ||..|.++|.|-|- ..+.|||||+= ..+|+++-+.|
T Consensus 299 l~~aY~~~v~~L~~~~~~~~~~fR~~H~qiV~kYIi~pa~~~~~~~~~~~gtGGtpl~~ll~~L~~~RD~r--------- 369 (403)
T 1zee_A 299 HQDWYQENLKLFIEVCELHGQTAIQHHNELVTKYIAEPSVSMEQQHLAKVTASGPPLHVLLASLERLRDRR--------- 369 (403)
T ss_dssp GSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCC------------------------CCHHHHHHHHHHH---------
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhhhchhccCCCCCCCCcChHHHHHHHHHHHHHh---------
Confidence 44555555566777 99999999999886 12668999974 35677665443
Q ss_pred hhcccccCCCCCCCcHHHH
Q psy306 142 VSSFLLPKQYIPVLSGTLK 160 (190)
Q Consensus 142 lRT~Lipr~~~P~l~~~~~ 160 (190)
.--+|+.|+.=-+++.
T Consensus 370 ---~a~~~~~~~~~~~~~~ 385 (403)
T 1zee_A 370 ---AAVLRDDIRTRYYDLK 385 (403)
T ss_dssp ---TTCCCSSSCCTHHHHH
T ss_pred ---hhcchhhHHHhHHHHH
Confidence 2244666666555443
No 6
>2lis_A Sperm lysin; abalone lysin, fertilization protein, gamete recognition protein, cell adhesion; 1.35A {Haliotis rufescens} SCOP: a.19.1.1 PDB: 1lyn_A 1lis_A 2lyn_A
Probab=50.84 E-value=72 Score=25.23 Aligned_cols=107 Identities=22% Similarity=0.256 Sum_probs=67.3
Q ss_pred hhhhcHHHHHHHHHcCCCCCChHHHHHHHHHHHHhcCCCCCcHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCCCCCC
Q psy306 38 QTIFDEDIHASLLSRGDRSLSHKALQGAILITMYRDEPRFHLPSQILSALMDIDCCTAKWRHNHVLMVQRMIGSQHLGTG 117 (190)
Q Consensus 38 ~Sl~D~~~~~~L~~rG~r~~s~~al~~a~~i~vYrd~~~~~~l~~L~E~LvDiDe~~~~WR~rH~~mV~RmIG~~K~GTG 117 (190)
=.-||..+.+.|.++|... |.-... .+..+=|. .++++=.+=+.=+.+.|- +.|--
T Consensus 24 i~~~D~kl~~w~rrhg~~l-~~~q~k--~l~fvNRr-------------------~m~t~W~nY~~w~~k~i~--~lgR~ 79 (136)
T 2lis_A 24 IAGFDRGLVKWLRVHGRTL-STVQKK--ALYFVNRR-------------------YMQTHWANYMLWINKKID--ALGRT 79 (136)
T ss_dssp HHHHHHHHHHHHHHHGGGS-CHHHHH--HHHHHHHH-------------------HHHHHHHHHHHHHHHHHH--TSSSC
T ss_pred HHHHHHHHHHHHHHCCCCC-Cchhhh--HHHHHHHH-------------------HHHHHHHHHHHHHHHHHH--HhCCC
Confidence 3457888888888888653 544433 24444332 223332333444566663 22333
Q ss_pred CCc-hHHHHHHhhccccccchhhhhhhcccccCCCCCCCcHHHHhhcccCCC-CCCC
Q psy306 118 GTS-GYQYLRSTLSDRYKIFLDLFNVSSFLLPKQYIPVLSGTLKSQLSATPH-HPRN 172 (190)
Q Consensus 118 GSS-Gv~YLr~tl~~rykvFPeLW~lRT~Lipr~~~P~l~~~~~~~L~~~~~-~~~~ 172 (190)
-+. -+.-|-+.+..| ++-++.- ++|+-+..+|++++.|.+.|+.... .|..
T Consensus 80 p~~~dy~~lG~~iGrr--~~m~~~Y--~~lvrrnl~p~~~pym~kll~~~~~diPvr 132 (136)
T 2lis_A 80 PVVGDYTRLGAEIGRR--IDMAYFY--DFLKDKNMIPKYLPYMEEINRMRPADVPVK 132 (136)
T ss_dssp CCHHHHHHHHHHHHHH--SCTHHHH--HHHHHTTCCCCCCHHHHHHHHSCGGGCCCC
T ss_pred CchhHHHHHHHHHhhh--ccHHHHH--HHHHHhcccccCCHHHHHHhcCCcccCCCC
Confidence 343 367777777775 6666632 7889999999999999999997743 6654
No 7
>2hgk_A Hypothetical protein YQCC; helical bundle, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; NMR {Escherichia coli} SCOP: a.29.17.1
Probab=23.79 E-value=1.2e+02 Score=23.18 Aligned_cols=56 Identities=18% Similarity=0.134 Sum_probs=44.3
Q ss_pred hhhhhhcHHHHHHHHHcCCCCCChHHHHHHHHHHHHhcCCCCCcHHHHHHHHHhHHHHHH
Q psy306 36 MFQTIFDEDIHASLLSRGDRSLSHKALQGAILITMYRDEPRFHLPSQILSALMDIDCCTA 95 (190)
Q Consensus 36 ~f~Sl~D~~~~~~L~~rG~r~~s~~al~~a~~i~vYrd~~~~~~l~~L~E~LvDiDe~~~ 95 (190)
+..=||=+..+ +|+..|..-++.-++.. ....+|++.+ .+...|...|.+||+.++
T Consensus 50 WLQwIFIPRM~-alie~~~pLP~~~aIaP-yaEe~~k~~~--~~~~~Ll~~L~~lD~l~~ 105 (117)
T 2hgk_A 50 WLQWVLIPRMH-DLLDNKQPLPGAFAVAP-YYEMALATDH--PQRALILAELEKLDALFA 105 (117)
T ss_dssp HHTTTHHHHHH-HHHHTTCCCCTTCCCHH-HHHHHSCTTC--TTHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHH-HHHHCCCCCCcccchHH-HHHHHHccCc--chHHHHHHHHHHHHHHhC
Confidence 34558889999 99999988777777764 7778888864 346789999999999886
No 8
>3lyn_A Sperm lysin; abalone lysin, fertilization protein, gamete recognition protein, cell adhesion; 1.70A {Haliotis fulgens} SCOP: a.19.1.1
Probab=22.65 E-value=54 Score=26.09 Aligned_cols=105 Identities=20% Similarity=0.339 Sum_probs=66.2
Q ss_pred hhcHHHHHHHHHcCCCCCChHHHHHHHHHHHHhcCCCCCcHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCC
Q psy306 40 IFDEDIHASLLSRGDRSLSHKALQGAILITMYRDEPRFHLPSQILSALMDIDCCTAKWRHNHVLMVQRMIGSQHLGTGGT 119 (190)
Q Consensus 40 l~D~~~~~~L~~rG~r~~s~~al~~a~~i~vYrd~~~~~~l~~L~E~LvDiDe~~~~WR~rH~~mV~RmIG~~K~GTGGS 119 (190)
-||..+-..|.++|.+. |.-+-. .+..+=|- -..+.|..-=.=.+.++= |.|--.+
T Consensus 26 gfDrkl~~wlr~Hg~~l-s~iq~k--~lyFvNRr------------------ymqt~W~nym~W~~k~i~---kLgR~P~ 81 (136)
T 3lyn_A 26 GFDRQLTAWLRVHGRRL-TNNQKK--TLFFVNRR------------------YMQTHWQNYMLWVKRKIK---ALGRPAA 81 (136)
T ss_dssp HHHHHHHHHHHHHGGGS-CHHHHH--HHHHHHHH------------------HHHHHHHHHHHHHHHHHH---TTSSCCC
T ss_pred HHHHHHHHHHHHCCCCC-Cchhhh--hhhhhhHH------------------HHHHhHHHHHHHHHHHHH---HhCCCCc
Confidence 35666667888999764 543333 34443332 122334333222333332 3444444
Q ss_pred c-hHHHHHHhhccccccchhhhhhhcccccCCCCCCCcHHHHhhcccC-CCCCCC
Q psy306 120 S-GYQYLRSTLSDRYKIFLDLFNVSSFLLPKQYIPVLSGTLKSQLSAT-PHHPRN 172 (190)
Q Consensus 120 S-Gv~YLr~tl~~rykvFPeLW~lRT~Lipr~~~P~l~~~~~~~L~~~-~~~~~~ 172 (190)
+ -+.-|-..+..| ++-+.. =++|+-+..+|.+.+.|.+.|+.+ .+.|+.
T Consensus 82 ~~DY~~lGaeiGRr--i~m~~~--Y~~lvrrnlip~~~pym~~ll~~~~~diPVr 132 (136)
T 3lyn_A 82 VGDYTRLGAEIGRR--VDMVFF--YNFLSGRKMIPPYSAYMAKLNALRPADVPVK 132 (136)
T ss_dssp HHHHHHHHHHHHHH--SCHHHH--HHHHHHTTCCCCCCHHHHHHHTSCGGGCCCC
T ss_pred hhHHHHHHHHHccc--CcHHHH--HHHHHHccccccCChHHHHHhcCCcccCCcc
Confidence 4 388888888886 777773 678999999999999999999977 346664
No 9
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=22.35 E-value=2e+02 Score=21.02 Aligned_cols=43 Identities=12% Similarity=0.234 Sum_probs=34.1
Q ss_pred hHHHHHHHHHHHHhcCCCCCcHHHHHHHHHhHHHHHHHHHHHHHH
Q psy306 59 HKALQGAILITMYRDEPRFHLPSQILSALMDIDCCTAKWRHNHVL 103 (190)
Q Consensus 59 ~~al~~a~~i~vYrd~~~~~~l~~L~E~LvDiDe~~~~WR~rH~~ 103 (190)
.+++.- |+.||...|.|.++-.+...|.+.+..+-.-+...++
T Consensus 38 regl~K--m~~vY~~nP~~GD~~s~~~~L~e~~~kid~L~~el~K 80 (98)
T 2ke4_A 38 REALKK--MKDVYEKTPQMGDPASLEPQIAETLSNIERLKLEVQK 80 (98)
T ss_dssp HTHHHH--HHHHHHHCGGGCCGGGSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH--HHHHHHcCCccCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567775 9999999999999988888888887777666665543
No 10
>2cue_A Paired box protein PAX6; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=18.93 E-value=2.2e+02 Score=19.03 Aligned_cols=65 Identities=15% Similarity=0.167 Sum_probs=35.3
Q ss_pred CCCCChHHHHHHHHHHHHhcCCCCCcHHHHHHHHHhH---HHHHHHHHHHHHHHHHHHh--cCCCCCCCCCch
Q psy306 54 DRSLSHKALQGAILITMYRDEPRFHLPSQILSALMDI---DCCTAKWRHNHVLMVQRMI--GSQHLGTGGTSG 121 (190)
Q Consensus 54 ~r~~s~~al~~a~~i~vYrd~~~~~~l~~L~E~LvDi---De~~~~WR~rH~~mV~RmI--G~~K~GTGGSSG 121 (190)
...|+..++. ++...|... .|....+..+.-..+ +..++.|=.+.-.--.|.- ..++.++|.|||
T Consensus 11 Rt~ft~~Q~~--~Le~~F~~~-~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~~~~~~~~~s~~ssG 80 (80)
T 2cue_A 11 RTSFTQEQIE--ALEKEFERT-HYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEKLRNQRRQSGPSSG 80 (80)
T ss_dssp CCCSCHHHHH--HHHHHHTTC-SSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCSSCCCC
T ss_pred CCccCHHHHH--HHHHHHhcc-CCCCHHHHHHHHHHhCCCHHHhhHHHHHHHHHHHHHhhhhhccCCCCCCCC
Confidence 3456777777 477778654 466555443332222 5667778554443333322 112456777776
Done!