RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy306
         (190 letters)



>d2nw8a1 a.266.1.1 (A:23-284) Tryptophan 2,3-dioxygenase
           {Xanthomonas campestris pv. campestris [TaxId: 340]}
          Length = 262

 Score = 85.2 bits (210), Expect = 5e-21
 Identities = 26/135 (19%), Positives = 54/135 (40%), Gaps = 4/135 (2%)

Query: 13  DYLDAESESLQSCQIADYKKRKEMFQTIFDEDIHASLLSR-GDRSLSHKALQGAILITMY 71
                ++   +  +     +    +   F   I     +R    +         +   +Y
Sbjct: 129 YDPAGQARLREVLEAPSLYEEFLRYLARFGHAIPQQYQARDWTAAHVADDTLRPVFERIY 188

Query: 72  RDEPRFHLPSQILSALMDIDCCTAKWRHNHVLMVQRMIGSQHLGTGGTSGYQYLRSTLSD 131
            +  R+     +   L+D++     WR  H+  V R+IG +  GTGG+SG  +L+  L+ 
Sbjct: 189 ENTDRYWREYSLCEDLVDVETQFQLWRFRHMRTVMRVIGFKR-GTGGSSGVGFLQQALAL 247

Query: 132 RYKIFLDLFNVSSFL 146
            +  F +LF+V + +
Sbjct: 248 TF--FPELFDVRTSV 260


>d1j3ba1 c.91.1.1 (A:212-529) Phosphoenolpyruvate (PEP)
           carboxykinase (ATP-oxaloacetate carboxy-lyase) {Thermus
           thermophilus [TaxId: 274]}
          Length = 318

 Score = 26.9 bits (59), Expect = 1.6
 Identities = 12/31 (38%), Positives = 15/31 (48%), Gaps = 2/31 (6%)

Query: 155 LSGTLKSQLSATPHHPR--NREHADSKKNCV 183
           LSGT K+ LS  P  P   + EH  S+    
Sbjct: 22  LSGTGKTTLSTDPERPLIGDDEHGWSEDGVF 52


>d1p2za1 b.121.2.2 (A:5-650) Adenovirus hexon {Human adenovirus type
           2 [TaxId: 10515]}
          Length = 646

 Score = 25.9 bits (57), Expect = 4.3
 Identities = 7/20 (35%), Positives = 12/20 (60%), Gaps = 1/20 (5%)

Query: 122 YQYLRSTLSDRYKIFLDLFN 141
           YQ L  ++ DR + F  ++N
Sbjct: 377 YQLLLDSIGDRTRYF-SMWN 395


>d1h2vc3 a.118.1.14 (C:481-790) CBP80, 80KDa nuclear cap-binding
           protein {Human (Homo sapiens) [TaxId: 9606]}
          Length = 310

 Score = 25.3 bits (55), Expect = 5.9
 Identities = 13/73 (17%), Positives = 29/73 (39%), Gaps = 18/73 (24%)

Query: 48  SLLSRGDRSLSHKALQGAILITMYRDEPRFHLPS-----QILSALMDIDCCTAKWRHNH- 101
           +LL    +S SH        +  + +  +    S      +L  + ++      WR++  
Sbjct: 70  TLLHLAAKSFSHS----FSALAKFHEVFKTLAESDEGKLHVLRVMFEV------WRNHPQ 119

Query: 102 --VLMVQRMIGSQ 112
              ++V +MI +Q
Sbjct: 120 MIAVLVDKMIRTQ 132


>d2olra1 c.91.1.1 (A:228-540) Phosphoenolpyruvate (PEP)
           carboxykinase (ATP-oxaloacetate carboxy-lyase)
           {Escherichia coli [TaxId: 562]}
          Length = 313

 Score = 25.0 bits (54), Expect = 6.3
 Identities = 10/24 (41%), Positives = 12/24 (50%), Gaps = 2/24 (8%)

Query: 155 LSGTLKSQLSATPHH--PRNREHA 176
           LSGT K+ LS  P      + EH 
Sbjct: 22  LSGTGKTTLSTDPKRRLIGDDEHG 45


>d1ii2a1 c.91.1.1 (A:201-523) Phosphoenolpyruvate (PEP)
           carboxykinase (ATP-oxaloacetate carboxy-lyase)
           {Trypanosoma cruzi [TaxId: 5693]}
          Length = 323

 Score = 24.5 bits (53), Expect = 8.2
 Identities = 10/14 (71%), Positives = 11/14 (78%)

Query: 155 LSGTLKSQLSATPH 168
           LSGT K+ LSA PH
Sbjct: 22  LSGTGKTTLSADPH 35


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.321    0.134    0.399 

Gapped
Lambda     K      H
   0.267   0.0548    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 683,008
Number of extensions: 28333
Number of successful extensions: 55
Number of sequences better than 10.0: 1
Number of HSP's gapped: 53
Number of HSP's successfully gapped: 9
Length of query: 190
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 110
Effective length of database: 1,309,196
Effective search space: 144011560
Effective search space used: 144011560
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.5 bits)