BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3060
(268 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2J6W|A Chain A, R164n Mutant Of The Runx1 Runt Domain
pdb|2J6W|B Chain B, R164n Mutant Of The Runx1 Runt Domain
Length = 140
Score = 156 bits (394), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 70/96 (72%), Positives = 82/96 (85%)
Query: 21 AERTLDSLLAEHPGELTRTGCPHVVCTVLPTHWRSNKTLPVAFKVVALGDVMDGTIVTIR 80
+R++ +LA+HPGEL RT P+ + +VLPTHWRSNKTLP+AFKVVALGDV DGT+VT+
Sbjct: 2 GDRSMVEVLADHPGELVRTDSPNFLSSVLPTHWRSNKTLPIAFKVVALGDVPDGTLVTVM 61
Query: 81 AGNDENYCGELRNCTAVMKNQVAKFNDLRFVGRSGR 116
AGNDENY ELRN TA MKNQVA+FNDLRFVGRSGR
Sbjct: 62 AGNDENYSAELRNATAAMKNQVARFNDLRFVGRSGR 97
>pdb|1EAN|A Chain A, The Runx1 Runt Domain At 1.25a Resolution: A Structural
Switch And Specifically Bound Chloride Ions Modulate Dna
Binding
pdb|1EAO|A Chain A, The Runx1 Runt Domain At 1.25a Resolution: A Structural
Switch And Specifically Bound Chloride Ions Modulate Dna
Binding
pdb|1EAO|B Chain B, The Runx1 Runt Domain At 1.25a Resolution: A Structural
Switch And Specifically Bound Chloride Ions Modulate Dna
Binding
Length = 140
Score = 155 bits (393), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 70/96 (72%), Positives = 82/96 (85%)
Query: 21 AERTLDSLLAEHPGELTRTGCPHVVCTVLPTHWRSNKTLPVAFKVVALGDVMDGTIVTIR 80
+R++ +LA+HPGEL RT P+ + +VLPTHWRSNKTLP+AFKVVALGDV DGT+VT+
Sbjct: 2 GDRSMVEVLADHPGELVRTDSPNFLSSVLPTHWRSNKTLPIAFKVVALGDVPDGTLVTVM 61
Query: 81 AGNDENYCGELRNCTAVMKNQVAKFNDLRFVGRSGR 116
AGNDENY ELRN TA MKNQVA+FNDLRFVGRSGR
Sbjct: 62 AGNDENYSAELRNATAAMKNQVARFNDLRFVGRSGR 97
>pdb|1CMO|A Chain A, Immunoglobulin Motif Dna-Recognition And
Heterodimerization For The Pebp2CBF RUNT-Domain
Length = 127
Score = 155 bits (392), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 70/89 (78%), Positives = 79/89 (88%)
Query: 28 LLAEHPGELTRTGCPHVVCTVLPTHWRSNKTLPVAFKVVALGDVMDGTIVTIRAGNDENY 87
+LA+HPGEL RT P+ +C+VLPTHWRSNKTLP+AFKVVALGDV DGT+VT+ AGNDENY
Sbjct: 3 VLADHPGELVRTDSPNFLCSVLPTHWRSNKTLPIAFKVVALGDVPDGTLVTVMAGNDENY 62
Query: 88 CGELRNCTAVMKNQVAKFNDLRFVGRSGR 116
ELRN TA MKNQVA+FNDLRFVGRSGR
Sbjct: 63 SAELRNATAAMKNQVARFNDLRFVGRSGR 91
>pdb|1H9D|A Chain A, Aml1CBF-BetaDNA COMPLEX
pdb|1H9D|C Chain C, Aml1CBF-BetaDNA COMPLEX
pdb|1E50|A Chain A, Aml1CBF COMPLEX
pdb|1E50|C Chain C, Aml1CBF COMPLEX
pdb|1E50|E Chain E, Aml1CBF COMPLEX
pdb|1E50|G Chain G, Aml1CBF COMPLEX
pdb|1E50|Q Chain Q, Aml1CBF COMPLEX
pdb|1E50|R Chain R, Aml1CBF COMPLEX
Length = 134
Score = 152 bits (385), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 69/89 (77%), Positives = 78/89 (87%)
Query: 28 LLAEHPGELTRTGCPHVVCTVLPTHWRSNKTLPVAFKVVALGDVMDGTIVTIRAGNDENY 87
+LA+HPGEL RT P+ +C+VLPTHWR NKTLP+AFKVVALGDV DGT+VT+ AGNDENY
Sbjct: 5 VLADHPGELVRTDSPNFLCSVLPTHWRCNKTLPIAFKVVALGDVPDGTLVTVMAGNDENY 64
Query: 88 CGELRNCTAVMKNQVAKFNDLRFVGRSGR 116
ELRN TA MKNQVA+FNDLRFVGRSGR
Sbjct: 65 SAELRNATAAMKNQVARFNDLRFVGRSGR 93
>pdb|1LJM|A Chain A, Dna Recognition Is Mediated By Conformational Transition
And By Dna Bending
pdb|1LJM|B Chain B, Dna Recognition Is Mediated By Conformational Transition
And By Dna Bending
Length = 131
Score = 152 bits (384), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 69/89 (77%), Positives = 78/89 (87%)
Query: 28 LLAEHPGELTRTGCPHVVCTVLPTHWRSNKTLPVAFKVVALGDVMDGTIVTIRAGNDENY 87
+LA+HPGEL RT P+ +C+VLPTHWR NKTLP+AFKVVALGDV DGT+VT+ AGNDENY
Sbjct: 4 VLADHPGELVRTDSPNFLCSVLPTHWRCNKTLPIAFKVVALGDVPDGTLVTVMAGNDENY 63
Query: 88 CGELRNCTAVMKNQVAKFNDLRFVGRSGR 116
ELRN TA MKNQVA+FNDLRFVGRSGR
Sbjct: 64 SAELRNATAAMKNQVARFNDLRFVGRSGR 92
>pdb|1EAQ|A Chain A, The Runx1 Runt Domain At 1.25a Resolution: A Structural
Switch And Specifically Bound Chloride Ions Modulate Dna
Binding
pdb|1EAQ|B Chain B, The Runx1 Runt Domain At 1.25a Resolution: A Structural
Switch And Specifically Bound Chloride Ions Modulate Dna
Binding
Length = 140
Score = 152 bits (383), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 69/96 (71%), Positives = 80/96 (83%)
Query: 21 AERTLDSLLAEHPGELTRTGCPHVVCTVLPTHWRSNKTLPVAFKVVALGDVMDGTIVTIR 80
+R+ +LA+HPGEL RT P+ + +VLPTHWRSNKTLP+AFKVVALGDV DGT+VT+
Sbjct: 2 GDRSXVEVLADHPGELVRTDSPNFLSSVLPTHWRSNKTLPIAFKVVALGDVPDGTLVTVX 61
Query: 81 AGNDENYCGELRNCTAVMKNQVAKFNDLRFVGRSGR 116
AGNDENY ELRN TA KNQVA+FNDLRFVGRSGR
Sbjct: 62 AGNDENYSAELRNATAAXKNQVARFNDLRFVGRSGR 97
>pdb|1IO4|C Chain C, Crystal Structure Of Runx-1AML1CBFALPHA RUNT DOMAIN-
Cbfbeta Core Domain Heterodimer And CEBPBETA BZIP
Homodimer Bound To A Dna Fragment From The Csf-1r
Promoter
pdb|1HJB|C Chain C, Crystal Structure Of Runx-1AML1CBFALPHA RUNT DOMAIN AND
CEBPBETA BZIP DIMERIC BOUND TO A DNA FRAGMENT FROM THE
Csf-1r Promoter
pdb|1HJB|F Chain F, Crystal Structure Of Runx-1AML1CBFALPHA RUNT DOMAIN AND
CEBPBETA BZIP DIMERIC BOUND TO A DNA FRAGMENT FROM THE
Csf-1r Promoter
pdb|1HJC|A Chain A, Crystal Structure Of Runx-1AML1CBFALPHA RUNT DOMAIN BOUND
To A Dna Fragment From The Csf-1r Promoter
pdb|1HJC|D Chain D, Crystal Structure Of Runx-1AML1CBFALPHA RUNT DOMAIN BOUND
To A Dna Fragment From The Csf-1r Promoter
Length = 123
Score = 142 bits (358), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 65/83 (78%), Positives = 72/83 (86%)
Query: 34 GELTRTGCPHVVCTVLPTHWRSNKTLPVAFKVVALGDVMDGTIVTIRAGNDENYCGELRN 93
GEL RT P+ +C+VLPTHWR NKTLP+AFKVVALGDV DGT+VT+ AGNDENY ELRN
Sbjct: 1 GELVRTDSPNFLCSVLPTHWRCNKTLPIAFKVVALGDVPDGTLVTVMAGNDENYSAELRN 60
Query: 94 CTAVMKNQVAKFNDLRFVGRSGR 116
TA MKNQVA+FNDLRFVGRSGR
Sbjct: 61 ATAAMKNQVARFNDLRFVGRSGR 83
>pdb|1CO1|A Chain A, Fold Of The Cbfa
Length = 115
Score = 140 bits (352), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 64/82 (78%), Positives = 71/82 (86%)
Query: 35 ELTRTGCPHVVCTVLPTHWRSNKTLPVAFKVVALGDVMDGTIVTIRAGNDENYCGELRNC 94
EL RT P+ +C+VLPTHWR NKTLP+AFKVVALGDV DGT+VT+ AGNDENY ELRN
Sbjct: 1 ELVRTDSPNFLCSVLPTHWRCNKTLPIAFKVVALGDVPDGTLVTVMAGNDENYSAELRNA 60
Query: 95 TAVMKNQVAKFNDLRFVGRSGR 116
TA MKNQVA+FNDLRFVGRSGR
Sbjct: 61 TAAMKNQVARFNDLRFVGRSGR 82
>pdb|2W62|A Chain A, Saccharomyces Cerevisiae Gas2p In Complex With
Laminaripentaose
pdb|2W63|A Chain A, Saccharomyces Cerevisiae Gas2p In Complex With
Laminaritriose And Laminaritetraose
Length = 555
Score = 30.4 bits (67), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 42/93 (45%), Gaps = 18/93 (19%)
Query: 28 LLAEHPGELTRTGCPHVVCTVLPTHWRSNKTLPVA---FKVVALGDVMDGTIVTIRA--G 82
L A+ P E+ CPH+ V W +N+ LP K L +++ IV A G
Sbjct: 354 LTAKEPTEVESVECPHIAVGV----WEANEKLPETPDRSKCACLDEILPCEIVPFGAESG 409
Query: 83 NDENY----CGELRNCTAVMKN----QVAKFND 107
E Y C ++ +C+ ++ N + +F+D
Sbjct: 410 KYEEYFSYLCSKV-DCSDILANGKTGEYGEFSD 441
>pdb|2W61|A Chain A, Saccharomyces Cerevisiae Gas2p Apostructure (E176q Mutant)
Length = 555
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 42/93 (45%), Gaps = 18/93 (19%)
Query: 28 LLAEHPGELTRTGCPHVVCTVLPTHWRSNKTLPVA---FKVVALGDVMDGTIVTIRA--G 82
L A+ P E+ CPH+ V W +N+ LP K L +++ IV A G
Sbjct: 354 LTAKEPTEVESVECPHIAVGV----WEANEKLPETPDRSKCACLDEILPCEIVPFGAESG 409
Query: 83 NDENY----CGELRNCTAVMKN----QVAKFND 107
E Y C ++ +C+ ++ N + +F+D
Sbjct: 410 KYEEYFSYLCSKV-DCSDILANGKTGEYGEFSD 441
>pdb|1RHH|B Chain B, Crystal Structure Of The Broadly Hiv-1 Neutralizing Fab X5
At 1.90 Angstrom Resolution
pdb|1RHH|D Chain D, Crystal Structure Of The Broadly Hiv-1 Neutralizing Fab X5
At 1.90 Angstrom Resolution
Length = 239
Score = 29.6 bits (65), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 11/41 (26%), Positives = 23/41 (56%)
Query: 116 REAEASPKDWVGTLIWLIGIKNKHQQYEIEISFLINQITAS 156
R+A +W+G +I + G N Q++ ++F +Q T++
Sbjct: 39 RQAPGHGLEWMGGIIPIFGTSNYAQKFRGRVTFTADQATST 79
>pdb|2B4C|H Chain H, Crystal Structure Of Hiv-1 Jr-fl Gp120 Core Protein
Containing The Third Variable Region (v3) Complexed With
Cd4 And The X5 Antibody
Length = 235
Score = 29.6 bits (65), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 11/41 (26%), Positives = 23/41 (56%)
Query: 116 REAEASPKDWVGTLIWLIGIKNKHQQYEIEISFLINQITAS 156
R+A +W+G +I + G N Q++ ++F +Q T++
Sbjct: 39 RQAPGHGLEWMGGIIPIFGTSNYAQKFRGRVTFTADQATST 79
>pdb|2QPX|A Chain A, Crystal Structure Of Putative Metal-Dependent Hydrolase
(Yp_805737.1) From Lactobacillus Casei Atcc 334 At 1.40
A Resolution
Length = 376
Score = 28.5 bits (62), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 6/45 (13%)
Query: 102 VAKFNDLRFVGRSGREAEASPKDWVGTLIWLIGIKNKHQQYEIEI 146
VA FN L FV + ++A W+ + W K HQ+ E+ +
Sbjct: 338 VAHFNQLPFVDLAQKKA------WINAICWQTSAKLYHQERELRV 376
>pdb|2EAD|A Chain A, Crystal Structure Of 1,2-A-L-Fucosidase From
Bifidobacterium Bifidum In Complex With Substrate
pdb|2EAD|B Chain B, Crystal Structure Of 1,2-A-L-Fucosidase From
Bifidobacterium Bifidum In Complex With Substrate
Length = 899
Score = 28.5 bits (62), Expect = 4.1, Method: Composition-based stats.
Identities = 13/47 (27%), Positives = 25/47 (53%), Gaps = 6/47 (12%)
Query: 176 LVPIVPNHLSKIDIFTGGSLCGLVLLTHFSSGARWDSASAPSIPISN 222
++P +P D + GGS+ GLV +F+ G W + A + +++
Sbjct: 801 ILPALP------DAWAGGSVSGLVARGNFTVGTTWKNGKATEVRLTS 841
>pdb|2EAE|A Chain A, Crystal Structure Of 1,2-A-L-Fucosidase From
Bifidobacterium Bifidum In Complexes With Products
Length = 898
Score = 28.5 bits (62), Expect = 4.1, Method: Composition-based stats.
Identities = 13/47 (27%), Positives = 25/47 (53%), Gaps = 6/47 (12%)
Query: 176 LVPIVPNHLSKIDIFTGGSLCGLVLLTHFSSGARWDSASAPSIPISN 222
++P +P D + GGS+ GLV +F+ G W + A + +++
Sbjct: 800 ILPALP------DAWAGGSVSGLVARGNFTVGTTWKNGKATEVRLTS 840
>pdb|2EAB|A Chain A, Crystal Structure Of 1,2-A-L-Fucosidase From
Bifidobacterium Bifidum (Apo Form)
pdb|2EAB|B Chain B, Crystal Structure Of 1,2-A-L-Fucosidase From
Bifidobacterium Bifidum (Apo Form)
pdb|2EAC|A Chain A, Crystal Structure Of 1,2-A-L-Fucosidase From
Bifidobacterium Bifidum In Complex With
Deoxyfuconojirimycin
pdb|2EAC|B Chain B, Crystal Structure Of 1,2-A-L-Fucosidase From
Bifidobacterium Bifidum In Complex With
Deoxyfuconojirimycin
Length = 899
Score = 28.5 bits (62), Expect = 4.1, Method: Composition-based stats.
Identities = 13/47 (27%), Positives = 25/47 (53%), Gaps = 6/47 (12%)
Query: 176 LVPIVPNHLSKIDIFTGGSLCGLVLLTHFSSGARWDSASAPSIPISN 222
++P +P D + GGS+ GLV +F+ G W + A + +++
Sbjct: 801 ILPALP------DAWAGGSVSGLVARGNFTVGTTWKNGKATEVRLTS 841
>pdb|1X9Z|A Chain A, Crystal Structure Of The Mutl C-Terminal Domain
pdb|1X9Z|B Chain B, Crystal Structure Of The Mutl C-Terminal Domain
Length = 188
Score = 27.3 bits (59), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 27/55 (49%)
Query: 161 LRMYEKTLRLGHLILLVPIVPNHLSKIDIFTGGSLCGLVLLTHFSSGARWDSASA 215
+R LR +L +L+P + +L+K +F G++ + S A+W A A
Sbjct: 96 IRAVPLPLRQQNLQILIPELIGYLAKQSVFEPGNIAQWIARNLXSEHAQWSXAQA 150
>pdb|3RS8|A Chain A, Crystal Structure Of Tm0922, A Fusion Of A Domain Of
Unknown Function And AdpATP-Dependent Nad(P)h-Hydrate
Dehydratase From Thermotoga Maritima In Complex With
Adp-Ribose
pdb|3RS9|A Chain A, Crystal Structure Of Tm0922, A Fusion Of A Domain Of
Unknown Function And AdpATP-Dependent Nad(P)h-Hydrate
Dehydratase From Thermotoga Maritima In Complex With
P1,P3-Di(Adenosine-5') Triphosphate
pdb|3RSF|A Chain A, Crystal Structure Of Tm0922, A Fusion Of A Domain Of
Unknown Function And AdpATP-Dependent Nad(P)h-Hydrate
Dehydratase From Thermotoga Maritima In Complex With
P1,P4-Di(Adenosine-5') Tetraphosphate
pdb|3RSQ|A Chain A, Crystal Structure Of Tm0922, A Fusion Of A Domain Of
Unknown Function And AdpATP-Dependent Nad(P)h-Hydrate
Dehydratase From Thermotoga Maritima Soaked With Nadh
pdb|3RSS|A Chain A, Crystal Structure Of Tm0922, A Fusion Of A Domain Of
Unknown Function And AdpATP-Dependent Nad(P)h-Hydrate
Dehydratase From Thermotoga Maritima Soaked With Nadp
pdb|3RT7|A Chain A, Crystal Structure Of Tm0922, A Fusion Of A Domain Of
Unknown Function And AdpATP-Dependent Nad(P)h-Hydrate
Dehydratase From Thermotoga Maritima In Complex With
Adp-Glucose
pdb|3RT9|A Chain A, Crystal Structure Of Tm0922, A Fusion Of A Domain Of
Unknown Function And AdpATP-Dependent Nad(P)h-Hydrate
Dehydratase From Thermotoga Maritima Soaked With
Coenzyme A
pdb|3RTA|A Chain A, Crystal Structure Of Tm0922, A Fusion Of A Domain Of
Unknown Function And AdpATP-Dependent Nad(P)h-Hydrate
Dehydratase From Thermotoga Maritima Soaked With Acetyl
Coenzyme A
pdb|3RTC|A Chain A, Crystal Structure Of Tm0922, A Fusion Of A Domain Of
Unknown Function And AdpATP-Dependent Nad(P)h-Hydrate
Dehydratase From Thermotoga Maritima Soaked With Nad And
Atp.
pdb|3RTD|A Chain A, Crystal Structure Of Tm0922, A Fusion Of A Domain Of
Unknown Function And AdpATP-Dependent Nad(P)h-Hydrate
Dehydratase From Thermotoga Maritima Soaked With Nadh
And Adp.
pdb|3RTE|A Chain A, Crystal Structure Of Tm0922, A Fusion Of A Domain Of
Unknown Function And AdpATP-Dependent Nad(P)h-Hydrate
Dehydratase From Thermotoga Maritima Soaked With Nadp
And Atp.
pdb|3RTG|A Chain A, Crystal Structure Of Tm0922, A Fusion Of A Domain Of
Unknown Function And AdpATP-Dependent Nad(P)h-Hydrate
Dehydratase From Thermotoga Maritima Soaked With
Coenzyme A And Atp
pdb|3RU3|A Chain A, Crystal Structure Of Tm0922, A Fusion Of A Domain Of
Unknown Function And AdpATP-Dependent Nad(P)h-Hydrate
Dehydratase From Thermotoga Maritima Soaked With Nadph
And Atp.
pdb|3RRB|A Chain A, Crystal Structure Of Tm0922, A Fusion Of A Domain Of
Unknown Function And AdpATP-Dependent Nad(P)h-Hydrate
Dehydratase From Thermotoga Maritima In Complex With Amp
pdb|3RRE|A Chain A, Crystal Structure Of Tm0922, A Fusion Of A Domain Of
Unknown Function And AdpATP-Dependent Nad(P)h-Hydrate
Dehydratase From Thermotoga Maritima In Complex With Adp
pdb|3RRF|A Chain A, Crystal Structure Of Tm0922, A Fusion Of A Domain Of
Unknown Function And AdpATP-Dependent Nad(P)h-Hydrate
Dehydratase From Thermotoga Maritima In Complex With Atp
pdb|3RRJ|A Chain A, Crystal Structure Of Tm0922, A Fusion Of A Domain Of
Unknown Function And AdpATP-Dependent Nad(P)h-Hydrate
Dehydratase From Thermotoga Maritima In Complex With
P1,P5-Di(Adenosine-5') Pentaphosphate
pdb|3RSG|A Chain A, Crystal Structure Of Tm0922, A Fusion Of A Domain Of
Unknown Function And AdpATP-Dependent Nad(P)h-Hydrate
Dehydratase From Thermotoga Maritima Soaked With Nad.
pdb|3RTB|A Chain A, Crystal Structure Of Tm0922, A Fusion Of A Domain Of
Unknown Function And AdpATP-Dependent Nad(P)h-Hydrate
Dehydratase From Thermotoga Maritima Soaked With
Adenosine-3'-5'-Diphosphate
pdb|3RU2|A Chain A, Crystal Structure Of Tm0922, A Fusion Of A Domain Of
Unknown Function And AdpATP-Dependent Nad(P)h-Hydrate
Dehydratase From Thermotoga Maritima Soaked With Nadph
Length = 502
Score = 27.3 bits (59), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 10 DNENFISAEVLAERTLDSLLAEHPGELTR 38
D N + VL ER ++L HPGE+ R
Sbjct: 356 DAINVLDTSVLKERKSPAVLTPHPGEMAR 384
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,237,498
Number of Sequences: 62578
Number of extensions: 319128
Number of successful extensions: 570
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 555
Number of HSP's gapped (non-prelim): 19
length of query: 268
length of database: 14,973,337
effective HSP length: 97
effective length of query: 171
effective length of database: 8,903,271
effective search space: 1522459341
effective search space used: 1522459341
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)