BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3060
(268 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q03347|RUNX1_MOUSE Runt-related transcription factor 1 OS=Mus musculus GN=Runx1 PE=1
SV=1
Length = 451
Score = 160 bits (404), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 70/96 (72%), Positives = 82/96 (85%)
Query: 21 AERTLDSLLAEHPGELTRTGCPHVVCTVLPTHWRSNKTLPVAFKVVALGDVMDGTIVTIR 80
+R++ +LA+HPGEL RT P+ +C+VLPTHWR NKTLP+AFKVVALGDV DGT+VT+
Sbjct: 47 GDRSMVEVLADHPGELVRTDSPNFLCSVLPTHWRCNKTLPIAFKVVALGDVPDGTLVTVM 106
Query: 81 AGNDENYCGELRNCTAVMKNQVAKFNDLRFVGRSGR 116
AGNDENY ELRN TA MKNQVA+FNDLRFVGRSGR
Sbjct: 107 AGNDENYSAELRNATAAMKNQVARFNDLRFVGRSGR 142
>sp|Q01196|RUNX1_HUMAN Runt-related transcription factor 1 OS=Homo sapiens GN=RUNX1 PE=1
SV=3
Length = 453
Score = 160 bits (404), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 70/96 (72%), Positives = 82/96 (85%)
Query: 21 AERTLDSLLAEHPGELTRTGCPHVVCTVLPTHWRSNKTLPVAFKVVALGDVMDGTIVTIR 80
+R++ +LA+HPGEL RT P+ +C+VLPTHWR NKTLP+AFKVVALGDV DGT+VT+
Sbjct: 47 GDRSMVEVLADHPGELVRTDSPNFLCSVLPTHWRCNKTLPIAFKVVALGDVPDGTLVTVM 106
Query: 81 AGNDENYCGELRNCTAVMKNQVAKFNDLRFVGRSGR 116
AGNDENY ELRN TA MKNQVA+FNDLRFVGRSGR
Sbjct: 107 AGNDENYSAELRNATAAMKNQVARFNDLRFVGRSGR 142
>sp|Q63046|RUNX1_RAT Runt-related transcription factor 1 OS=Rattus norvegicus GN=Runx1
PE=2 SV=1
Length = 450
Score = 160 bits (404), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 70/96 (72%), Positives = 82/96 (85%)
Query: 21 AERTLDSLLAEHPGELTRTGCPHVVCTVLPTHWRSNKTLPVAFKVVALGDVMDGTIVTIR 80
+R++ +LA+HPGEL RT P+ +C+VLPTHWR NKTLP+AFKVVALGDV DGT+VT+
Sbjct: 47 GDRSMVEVLADHPGELVRTDSPNFLCSVLPTHWRCNKTLPIAFKVVALGDVPDGTLVTVM 106
Query: 81 AGNDENYCGELRNCTAVMKNQVAKFNDLRFVGRSGR 116
AGNDENY ELRN TA MKNQVA+FNDLRFVGRSGR
Sbjct: 107 AGNDENYSAELRNATAAMKNQVARFNDLRFVGRSGR 142
>sp|Q64131|RUNX3_MOUSE Runt-related transcription factor 3 OS=Mus musculus GN=Runx3 PE=2
SV=3
Length = 409
Score = 156 bits (395), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 74/118 (62%), Positives = 89/118 (75%), Gaps = 9/118 (7%)
Query: 8 MNDNENFISAEVLAE---------RTLDSLLAEHPGELTRTGCPHVVCTVLPTHWRSNKT 58
M +N +SA+ A R++ +LA+H GEL RT P+ +C+VLP+HWR NKT
Sbjct: 30 MGENSGALSAQATAGPGGRTRPEVRSMVDVLADHAGELVRTDSPNFLCSVLPSHWRCNKT 89
Query: 59 LPVAFKVVALGDVMDGTIVTIRAGNDENYCGELRNCTAVMKNQVAKFNDLRFVGRSGR 116
LPVAFKVVALGDV DGT+VT+ AGNDENY ELRN +AVMKNQVA+FNDLRFVGRSGR
Sbjct: 90 LPVAFKVVALGDVPDGTVVTVMAGNDENYSAELRNASAVMKNQVARFNDLRFVGRSGR 147
>sp|Q13761|RUNX3_HUMAN Runt-related transcription factor 3 OS=Homo sapiens GN=RUNX3 PE=1
SV=2
Length = 415
Score = 155 bits (391), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 73/118 (61%), Positives = 88/118 (74%), Gaps = 9/118 (7%)
Query: 8 MNDNENFISAEVLAE---------RTLDSLLAEHPGELTRTGCPHVVCTVLPTHWRSNKT 58
M +N +SA+ R++ +LA+H GEL RT P+ +C+VLP+HWR NKT
Sbjct: 29 MGENSGALSAQAAVGPGGRARPEVRSMVDVLADHAGELVRTDSPNFLCSVLPSHWRCNKT 88
Query: 59 LPVAFKVVALGDVMDGTIVTIRAGNDENYCGELRNCTAVMKNQVAKFNDLRFVGRSGR 116
LPVAFKVVALGDV DGT+VT+ AGNDENY ELRN +AVMKNQVA+FNDLRFVGRSGR
Sbjct: 89 LPVAFKVVALGDVPDGTVVTVMAGNDENYSAELRNASAVMKNQVARFNDLRFVGRSGR 146
>sp|Q13950|RUNX2_HUMAN Runt-related transcription factor 2 OS=Homo sapiens GN=RUNX2 PE=1
SV=2
Length = 521
Score = 154 bits (390), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 68/94 (72%), Positives = 81/94 (86%)
Query: 23 RTLDSLLAEHPGELTRTGCPHVVCTVLPTHWRSNKTLPVAFKVVALGDVMDGTIVTIRAG 82
RT+ ++A+HP EL RT P+ +C+VLP+HWR NKTLPVAFKVVALG+V DGT+VT+ AG
Sbjct: 100 RTMVEIIADHPAELVRTDSPNFLCSVLPSHWRCNKTLPVAFKVVALGEVPDGTVVTVMAG 159
Query: 83 NDENYCGELRNCTAVMKNQVAKFNDLRFVGRSGR 116
NDENY ELRN +AVMKNQVA+FNDLRFVGRSGR
Sbjct: 160 NDENYSAELRNASAVMKNQVARFNDLRFVGRSGR 193
>sp|Q08775|RUNX2_MOUSE Runt-related transcription factor 2 OS=Mus musculus GN=Runx2 PE=1
SV=2
Length = 607
Score = 154 bits (389), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 68/94 (72%), Positives = 81/94 (86%)
Query: 23 RTLDSLLAEHPGELTRTGCPHVVCTVLPTHWRSNKTLPVAFKVVALGDVMDGTIVTIRAG 82
RT+ ++A+HP EL RT P+ +C+VLP+HWR NKTLPVAFKVVALG+V DGT+VT+ AG
Sbjct: 186 RTMVEIIADHPAELVRTDSPNFLCSVLPSHWRCNKTLPVAFKVVALGEVPDGTVVTVMAG 245
Query: 83 NDENYCGELRNCTAVMKNQVAKFNDLRFVGRSGR 116
NDENY ELRN +AVMKNQVA+FNDLRFVGRSGR
Sbjct: 246 NDENYSAELRNASAVMKNQVARFNDLRFVGRSGR 279
>sp|Q6PF39|RUNX1_XENLA Runt-related transcription factor 1 OS=Xenopus laevis GN=runx1 PE=2
SV=2
Length = 462
Score = 154 bits (388), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 67/95 (70%), Positives = 81/95 (85%)
Query: 22 ERTLDSLLAEHPGELTRTGCPHVVCTVLPTHWRSNKTLPVAFKVVALGDVMDGTIVTIRA 81
+R + +L++HPGEL RT P+ +C+VLPTHWR NKTLP+AFKVVALG+V DGT+VT+ A
Sbjct: 48 DRNMVEVLSDHPGELVRTDSPNFLCSVLPTHWRCNKTLPIAFKVVALGEVPDGTLVTVMA 107
Query: 82 GNDENYCGELRNCTAVMKNQVAKFNDLRFVGRSGR 116
GNDENY ELRN TA MK+QVA+FNDLRFVGRSGR
Sbjct: 108 GNDENYSAELRNATAAMKSQVARFNDLRFVGRSGR 142
>sp|P22814|RUNT_DROME Segmentation protein Runt OS=Drosophila melanogaster GN=run PE=2
SV=2
Length = 510
Score = 153 bits (387), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 66/93 (70%), Positives = 78/93 (83%)
Query: 24 TLDSLLAEHPGELTRTGCPHVVCTVLPTHWRSNKTLPVAFKVVALGDVMDGTIVTIRAGN 83
+L +L E+ GEL +TG P ++C+ LP HWRSNK+LP AFKV+AL DV DGT+V+I+ GN
Sbjct: 106 SLHEMLQEYHGELAQTGSPSILCSALPNHWRSNKSLPGAFKVIALDDVPDGTLVSIKCGN 165
Query: 84 DENYCGELRNCTAVMKNQVAKFNDLRFVGRSGR 116
DENYCGELRNCT MKNQVAKFNDLRFVGRSGR
Sbjct: 166 DENYCGELRNCTTTMKNQVAKFNDLRFVGRSGR 198
>sp|Q9W349|LOZEN_DROME Protein lozenge OS=Drosophila melanogaster GN=lz PE=2 SV=2
Length = 826
Score = 145 bits (366), Expect = 3e-34, Method: Composition-based stats.
Identities = 68/95 (71%), Positives = 74/95 (77%)
Query: 22 ERTLDSLLAEHPGELTRTGCPHVVCTVLPTHWRSNKTLPVAFKVVALGDVMDGTIVTIRA 81
ER + EHPGEL RT P+ +C+ LP HWRSNKTLP+AFKVVAL +V DGT VTIRA
Sbjct: 273 ERLVQKRQQEHPGELVRTSNPYFLCSALPAHWRSNKTLPMAFKVVALAEVGDGTYVTIRA 332
Query: 82 GNDENYCGELRNCTAVMKNQVAKFNDLRFVGRSGR 116
GNDEN C ELRN T MKN VAKFNDLRFVGRSGR
Sbjct: 333 GNDENCCAELRNFTTQMKNDVAKFNDLRFVGRSGR 367
>sp|Q9Z2J9|RUNX2_RAT Runt-related transcription factor 2 (Fragments) OS=Rattus
norvegicus GN=Runx2 PE=2 SV=2
Length = 218
Score = 110 bits (276), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 51/61 (83%), Positives = 56/61 (91%)
Query: 56 NKTLPVAFKVVALGDVMDGTIVTIRAGNDENYCGELRNCTAVMKNQVAKFNDLRFVGRSG 115
NKTLPVAFKVVALG+V DGT+VT+ AGNDENY ELRN +AVMKNQVA+FNDLRFVGRSG
Sbjct: 99 NKTLPVAFKVVALGEVPDGTVVTVMAGNDENYSAELRNASAVMKNQVARFNDLRFVGRSG 158
Query: 116 R 116
R
Sbjct: 159 R 159
>sp|Q25520|RUNT_MANSE Segmentation protein Runt (Fragment) OS=Manduca sexta GN=RUNT PE=2
SV=1
Length = 79
Score = 94.0 bits (232), Expect = 1e-18, Method: Composition-based stats.
Identities = 43/50 (86%), Positives = 45/50 (90%)
Query: 67 ALGDVMDGTIVTIRAGNDENYCGELRNCTAVMKNQVAKFNDLRFVGRSGR 116
AL DV DGT+VTI+AGNDEN ELRNCTAVMKNQVAKFNDLRFVGRSGR
Sbjct: 1 ALDDVQDGTLVTIKAGNDENVMAELRNCTAVMKNQVAKFNDLRFVGRSGR 50
>sp|O77019|AMYR_DROBA Alpha-amylase-related protein OS=Drosophila bakoue GN=Amyrel PE=3
SV=2
Length = 494
Score = 32.7 bits (73), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 66/154 (42%), Gaps = 22/154 (14%)
Query: 77 VTIRAGNDENYCGELRNCT--------AVMKNQVAKFNDLRFVGRSGREAEASPKDWVGT 128
+T R+GN+E + +R C V+ N ++ D VG +G EAE S K + G
Sbjct: 87 LTTRSGNEEEFADMVRRCNDVGIRIYVDVLLNHMSGDFDGVAVGTAGTEAEPSKKSFPGV 146
Query: 129 ---------LIWLIGIKNKHQQYEIEISFL--INQITASI-SELLRMYEKTLRLGHLILL 176
+ N+ Q E E+ L +NQ + + S+L+ + + LG
Sbjct: 147 PYTAQDFHPSCEITDWNNRFQVQECELVGLKDLNQHSDYVRSKLIEFLDHLIELGVAGFR 206
Query: 177 VPIVPNHLSKIDI-FTGGSLCGLVLLTHFSSGAR 209
V H++ +D+ + GSL L + F AR
Sbjct: 207 VD-AAKHMAAVDLEYIYGSLSNLNIEHGFPHNAR 239
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.136 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 102,068,894
Number of Sequences: 539616
Number of extensions: 4051928
Number of successful extensions: 8877
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 8865
Number of HSP's gapped (non-prelim): 14
length of query: 268
length of database: 191,569,459
effective HSP length: 115
effective length of query: 153
effective length of database: 129,513,619
effective search space: 19815583707
effective search space used: 19815583707
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.7 bits)