Query psy3060
Match_columns 268
No_of_seqs 90 out of 92
Neff 1.8
Searched_HMMs 29240
Date Sat Aug 17 00:41:17 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3060.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/3060hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1eaq_A RUNT-related transcript 100.0 8.7E-73 3E-77 467.2 9.1 124 21-144 2-139 (140)
2 2zhn_A Galectin-9; beta sandwi 76.1 5.6 0.00019 31.0 5.8 22 116-137 95-116 (148)
3 3nv1_A Galectin-9, galectin 9 52.4 45 0.0015 25.7 6.7 22 116-137 85-106 (138)
4 4gp7_A Metallophosphoesterase; 49.5 4.1 0.00014 30.9 0.4 17 108-124 12-28 (171)
5 3sop_A Neuronal-specific septi 48.9 4.5 0.00015 33.9 0.6 17 108-124 5-21 (270)
6 1pui_A ENGB, probable GTP-bind 47.7 4.8 0.00017 30.0 0.5 15 108-122 29-43 (210)
7 1lvg_A Guanylate kinase, GMP k 47.3 4.7 0.00016 31.4 0.4 21 108-128 7-27 (198)
8 1znw_A Guanylate kinase, GMP k 46.4 5 0.00017 31.0 0.4 19 108-126 23-41 (207)
9 2bme_A RAB4A, RAS-related prot 46.2 7 0.00024 28.2 1.2 22 98-119 3-24 (186)
10 1z6g_A Guanylate kinase; struc 45.5 5.2 0.00018 31.7 0.4 20 108-127 26-45 (218)
11 2d6m_A Galectin-9, lectin, gal 44.5 49 0.0017 26.2 5.9 22 116-137 96-117 (159)
12 3gfo_A Cobalt import ATP-bindi 44.2 8.7 0.0003 32.6 1.6 17 109-125 38-54 (275)
13 3c8u_A Fructokinase; YP_612366 43.6 6.4 0.00022 30.4 0.7 19 108-126 25-43 (208)
14 2yro_A Galectin-8; GAL-BIND le 42.6 55 0.0019 25.8 6.0 22 116-137 95-116 (155)
15 4a74_A DNA repair and recombin 42.3 6.6 0.00022 29.6 0.5 19 108-126 28-46 (231)
16 1kgd_A CASK, peripheral plasma 42.3 6.3 0.00022 29.9 0.4 17 109-125 9-25 (180)
17 2zej_A Dardarin, leucine-rich 42.0 6.3 0.00022 29.1 0.4 13 108-120 5-17 (184)
18 3tr0_A Guanylate kinase, GMP k 41.9 6.4 0.00022 29.4 0.4 19 108-126 10-28 (205)
19 2wkk_A Galectin-2; sugar-bindi 41.6 90 0.0031 24.6 7.1 24 116-139 85-108 (150)
20 2gj8_A MNME, tRNA modification 40.4 7.4 0.00025 28.8 0.5 12 108-119 7-18 (172)
21 1ye8_A Protein THEP1, hypothet 40.4 7 0.00024 30.6 0.4 17 109-125 4-20 (178)
22 2pcj_A ABC transporter, lipopr 40.1 7.3 0.00025 31.5 0.5 17 109-125 34-50 (224)
23 3kta_A Chromosome segregation 40.0 7.5 0.00026 28.8 0.5 14 109-122 30-43 (182)
24 4f4c_A Multidrug resistance pr 39.5 8 0.00027 39.5 0.8 12 108-119 1108-1119(1321)
25 2wji_A Ferrous iron transport 38.8 7.8 0.00027 28.1 0.4 13 108-120 6-18 (165)
26 2j41_A Guanylate kinase; GMP, 38.6 7.7 0.00026 28.9 0.4 18 108-125 9-26 (207)
27 3zsj_A Galectin-3; sugar bindi 38.1 82 0.0028 24.2 6.2 22 116-137 82-103 (138)
28 3asz_A Uridine kinase; cytidin 37.5 8.7 0.0003 29.1 0.5 20 108-127 9-28 (211)
29 1mv5_A LMRA, multidrug resista 37.5 8.2 0.00028 31.4 0.4 17 109-125 32-48 (243)
30 3a00_A Guanylate kinase, GMP k 37.2 8.4 0.00029 29.2 0.4 18 110-127 6-23 (186)
31 2fu5_C RAS-related protein RAB 37.0 13 0.00045 26.7 1.4 15 107-121 10-24 (183)
32 1uf3_A Hypothetical protein TT 36.8 36 0.0012 25.3 3.8 41 75-115 64-115 (228)
33 1zp6_A Hypothetical protein AT 36.5 9.1 0.00031 28.3 0.5 18 108-125 12-29 (191)
34 2ff7_A Alpha-hemolysin translo 36.4 8.8 0.0003 31.6 0.4 16 110-125 40-55 (247)
35 3uie_A Adenylyl-sulfate kinase 36.2 9 0.00031 29.3 0.4 14 108-121 28-41 (200)
36 1cke_A CK, MSSA, protein (cyti 36.0 9.1 0.00031 29.2 0.4 16 108-123 8-23 (227)
37 2ehv_A Hypothetical protein PH 35.9 9.1 0.00031 29.2 0.4 18 109-126 34-51 (251)
38 2cbz_A Multidrug resistance-as 35.8 9.1 0.00031 31.3 0.4 16 110-125 36-51 (237)
39 2wjg_A FEOB, ferrous iron tran 35.7 9.3 0.00032 27.7 0.4 13 108-120 10-22 (188)
40 1kag_A SKI, shikimate kinase I 35.6 9.2 0.00032 27.8 0.4 17 108-124 7-23 (173)
41 3tif_A Uncharacterized ABC tra 35.6 9.2 0.00031 31.2 0.4 17 109-125 35-51 (235)
42 3lxx_A GTPase IMAP family memb 34.5 9.9 0.00034 29.7 0.4 13 108-120 32-44 (239)
43 2npi_A Protein CLP1; CLP1-PCF1 34.3 5.6 0.00019 36.4 -1.2 51 73-124 94-157 (460)
44 1kao_A RAP2A; GTP-binding prot 34.1 10 0.00035 26.2 0.4 12 108-119 6-17 (167)
45 2bdt_A BH3686; alpha-beta prot 33.6 10 0.00036 28.3 0.4 17 109-125 6-22 (189)
46 1tq4_A IIGP1, interferon-induc 33.6 11 0.00036 34.4 0.5 19 108-126 72-90 (413)
47 1u0l_A Probable GTPase ENGC; p 33.0 11 0.00037 31.6 0.4 18 108-125 172-189 (301)
48 2ixe_A Antigen peptide transpo 32.8 11 0.00037 31.6 0.4 17 109-125 49-65 (271)
49 1z2a_A RAS-related protein RAB 32.8 11 0.00038 26.3 0.4 12 108-119 8-19 (168)
50 2f9l_A RAB11B, member RAS onco 32.7 11 0.00037 28.2 0.4 13 108-120 8-20 (199)
51 2d2e_A SUFC protein; ABC-ATPas 32.6 11 0.00038 30.9 0.4 19 109-127 33-51 (250)
52 1oix_A RAS-related protein RAB 32.6 12 0.0004 28.2 0.5 15 108-122 32-46 (191)
53 2f1r_A Molybdopterin-guanine d 32.6 5.5 0.00019 31.4 -1.3 20 108-127 5-24 (171)
54 2ghi_A Transport protein; mult 32.5 11 0.00038 31.3 0.4 16 110-125 51-66 (260)
55 2kjq_A DNAA-related protein; s 32.4 13 0.00044 28.2 0.7 22 106-127 37-58 (149)
56 2ce2_X GTPase HRAS; signaling 32.4 12 0.00041 25.7 0.5 13 108-120 6-18 (166)
57 2w0m_A SSO2452; RECA, SSPF, un 32.3 11 0.00039 28.0 0.4 16 109-124 27-42 (235)
58 1s96_A Guanylate kinase, GMP k 31.9 11 0.00039 30.5 0.4 18 109-126 20-37 (219)
59 2pze_A Cystic fibrosis transme 31.9 12 0.00039 30.4 0.4 17 109-125 38-54 (229)
60 2onk_A Molybdate/tungstate ABC 31.9 12 0.00039 31.0 0.4 18 108-125 27-44 (240)
61 3q72_A GTP-binding protein RAD 31.8 12 0.00042 26.2 0.5 13 108-120 5-17 (166)
62 1np6_A Molybdopterin-guanine d 31.7 12 0.0004 29.7 0.4 15 108-122 9-23 (174)
63 2v9p_A Replication protein E1; 31.6 12 0.0004 32.7 0.5 19 108-126 129-147 (305)
64 1b0u_A Histidine permease; ABC 31.5 12 0.0004 31.1 0.4 16 109-124 36-51 (262)
65 2olj_A Amino acid ABC transpor 31.4 12 0.0004 31.5 0.4 16 110-125 55-70 (263)
66 2cay_A VPS36 PH domain, vacuol 31.2 26 0.00089 28.1 2.4 44 217-261 76-122 (145)
67 1u8z_A RAS-related protein RAL 31.2 12 0.00042 25.8 0.4 12 108-119 7-18 (168)
68 1r8s_A ADP-ribosylation factor 31.1 12 0.00042 26.2 0.4 11 109-119 4-14 (164)
69 2fn4_A P23, RAS-related protei 31.1 13 0.00044 26.3 0.5 12 108-119 12-23 (181)
70 1knq_A Gluconate kinase; ALFA/ 31.0 12 0.00042 27.5 0.4 16 108-123 11-26 (175)
71 2cvh_A DNA repair and recombin 31.0 12 0.00042 27.9 0.4 66 195-261 146-217 (220)
72 1c1y_A RAS-related protein RAP 30.8 13 0.00043 26.0 0.4 12 108-119 6-17 (167)
73 1ji0_A ABC transporter; ATP bi 30.7 12 0.00042 30.4 0.4 18 109-126 36-53 (240)
74 3q85_A GTP-binding protein REM 30.7 13 0.00043 26.3 0.4 11 109-119 6-16 (169)
75 1ek0_A Protein (GTP-binding pr 30.7 13 0.00044 25.9 0.4 13 108-120 6-18 (170)
76 1g6h_A High-affinity branched- 30.6 12 0.00043 30.7 0.4 17 109-125 37-53 (257)
77 3b85_A Phosphate starvation-in 30.2 15 0.0005 29.7 0.8 18 109-126 26-43 (208)
78 2yz2_A Putative ABC transporte 30.1 13 0.00044 30.9 0.4 17 109-125 37-53 (266)
79 3nh6_A ATP-binding cassette SU 30.1 7.9 0.00027 33.6 -0.9 18 108-125 83-100 (306)
80 2nzj_A GTP-binding protein REM 29.9 13 0.00045 26.2 0.4 12 108-119 7-18 (175)
81 3lnc_A Guanylate kinase, GMP k 29.9 14 0.00049 28.7 0.7 19 108-126 30-48 (231)
82 2erx_A GTP-binding protein DI- 29.6 14 0.00046 25.8 0.4 13 108-120 6-18 (172)
83 1sgw_A Putative ABC transporte 29.3 13 0.00046 30.2 0.4 17 109-125 39-55 (214)
84 2eyu_A Twitching motility prot 29.1 14 0.00048 30.8 0.5 20 108-127 28-47 (261)
85 4eun_A Thermoresistant glucoki 29.1 14 0.00047 28.3 0.4 17 108-124 32-48 (200)
86 4g1u_C Hemin import ATP-bindin 29.0 14 0.00047 31.0 0.4 18 109-126 41-58 (266)
87 2nq2_C Hypothetical ABC transp 28.8 14 0.00048 30.6 0.5 17 109-125 35-51 (253)
88 2i3b_A HCR-ntpase, human cance 28.8 14 0.00047 29.4 0.4 16 109-124 5-20 (189)
89 4dsu_A GTPase KRAS, isoform 2B 28.8 14 0.00049 26.4 0.4 12 108-119 7-18 (189)
90 1vg8_A RAS-related protein RAB 28.7 16 0.00056 26.8 0.8 13 107-119 10-22 (207)
91 2y8e_A RAB-protein 6, GH09086P 28.4 22 0.00074 25.1 1.3 21 98-119 8-28 (179)
92 2zu0_C Probable ATP-dependent 28.4 14 0.00049 30.7 0.4 18 110-127 51-68 (267)
93 2qag_B Septin-6, protein NEDD5 28.3 16 0.00054 33.7 0.7 15 108-122 45-59 (427)
94 2yv5_A YJEQ protein; hydrolase 28.2 14 0.00049 31.0 0.4 40 76-124 145-184 (302)
95 3rl5_A Metallophosphoesterase 28.2 74 0.0025 27.8 4.9 55 58-112 76-178 (296)
96 1vpl_A ABC transporter, ATP-bi 27.9 15 0.0005 30.7 0.4 18 109-126 45-62 (256)
97 2ihy_A ABC transporter, ATP-bi 27.8 15 0.00051 31.1 0.4 18 109-126 51-68 (279)
98 3lxw_A GTPase IMAP family memb 27.6 15 0.00051 29.6 0.4 13 109-121 25-37 (247)
99 1z08_A RAS-related protein RAB 27.6 15 0.00052 25.7 0.4 13 108-120 9-21 (170)
100 3jvv_A Twitching mobility prot 27.6 31 0.0011 30.3 2.5 62 63-126 81-144 (356)
101 1n0w_A DNA repair protein RAD5 27.5 15 0.00052 27.9 0.4 69 195-263 164-241 (243)
102 1r2q_A RAS-related protein RAB 27.5 16 0.00053 25.5 0.4 12 108-119 9-20 (170)
103 2yl4_A ATP-binding cassette SU 27.5 17 0.00058 33.4 0.8 17 109-125 374-390 (595)
104 3tau_A Guanylate kinase, GMP k 27.4 15 0.00052 28.5 0.4 18 108-125 11-28 (208)
105 2qi9_C Vitamin B12 import ATP- 27.3 15 0.00052 30.5 0.4 17 109-125 30-46 (249)
106 1g16_A RAS-related protein SEC 27.3 16 0.00056 25.5 0.5 12 108-119 6-17 (170)
107 2qor_A Guanylate kinase; phosp 27.2 15 0.00053 28.1 0.4 13 108-120 15-27 (204)
108 1upt_A ARL1, ADP-ribosylation 26.5 17 0.00057 25.6 0.4 12 108-119 10-21 (171)
109 3con_A GTPase NRAS; structural 26.5 17 0.00056 26.5 0.4 12 108-119 24-35 (190)
110 1cr0_A DNA primase/helicase; R 26.4 17 0.00058 29.4 0.5 14 110-123 40-53 (296)
111 2bbw_A Adenylate kinase 4, AK4 26.4 16 0.00056 28.8 0.4 18 108-125 30-47 (246)
112 2g6b_A RAS-related protein RAB 26.3 17 0.00057 25.9 0.4 12 108-119 13-24 (180)
113 1wms_A RAB-9, RAB9, RAS-relate 26.3 17 0.00057 25.8 0.4 12 108-119 10-21 (177)
114 3tw8_B RAS-related protein RAB 26.2 21 0.00071 25.2 0.9 12 108-119 12-23 (181)
115 2wsm_A Hydrogenase expression/ 25.8 18 0.00061 27.3 0.5 13 107-119 32-44 (221)
116 3ney_A 55 kDa erythrocyte memb 25.8 17 0.00058 29.8 0.4 16 108-123 22-37 (197)
117 4f9l_D 20.1 anti-BTN3A1 antibo 25.7 19 0.00066 31.9 0.8 16 109-125 61-76 (259)
118 4f9p_D 103.2 anti-BTN3A1 antib 25.6 25 0.00086 31.2 1.5 16 109-125 197-212 (254)
119 1mh1_A RAC1; GTP-binding, GTPa 25.6 18 0.0006 25.8 0.4 12 108-119 8-19 (186)
120 1fzq_A ADP-ribosylation factor 25.4 18 0.00063 26.6 0.5 12 108-119 19-30 (181)
121 3t5g_A GTP-binding protein RHE 25.4 19 0.00064 25.9 0.5 12 108-119 9-20 (181)
122 3qf4_B Uncharacterized ABC tra 25.4 19 0.00067 33.2 0.8 17 108-124 384-400 (598)
123 1ly1_A Polynucleotide kinase; 25.3 18 0.00061 26.1 0.4 12 109-120 6-17 (181)
124 2hxs_A RAB-26, RAS-related pro 25.3 18 0.00062 25.7 0.4 12 108-119 9-20 (178)
125 2qnr_A Septin-2, protein NEDD5 25.3 18 0.0006 30.5 0.4 11 109-119 22-32 (301)
126 1rj9_A FTSY, signal recognitio 25.2 18 0.0006 31.1 0.4 18 108-125 105-122 (304)
127 3b60_A Lipid A export ATP-bind 25.2 18 0.00062 33.1 0.5 18 108-125 372-389 (582)
128 3lw7_A Adenylate kinase relate 25.2 18 0.00062 25.4 0.4 12 109-120 5-16 (179)
129 1rz3_A Hypothetical protein rb 25.1 19 0.00064 27.7 0.5 18 108-125 25-42 (201)
130 2bbs_A Cystic fibrosis transme 25.1 18 0.00063 30.8 0.5 18 109-126 68-85 (290)
131 2a9k_A RAS-related protein RAL 25.0 23 0.00079 25.1 1.0 12 108-119 21-32 (187)
132 3clv_A RAB5 protein, putative; 25.0 18 0.00063 25.7 0.4 13 108-120 10-22 (208)
133 1svi_A GTP-binding protein YSX 25.0 19 0.00066 26.1 0.6 12 108-119 26-37 (195)
134 2pjz_A Hypothetical protein ST 25.0 18 0.00061 30.4 0.4 18 109-126 34-51 (263)
135 1z0j_A RAB-22, RAS-related pro 24.9 19 0.00063 25.2 0.4 12 108-119 9-20 (170)
136 3bc1_A RAS-related protein RAB 24.9 19 0.00063 25.7 0.4 12 108-119 14-25 (195)
137 1f6b_A SAR1; gtpases, N-termin 24.9 18 0.00063 27.2 0.4 12 108-119 28-39 (198)
138 1ky3_A GTP-binding protein YPT 24.8 22 0.00074 25.1 0.8 13 108-120 11-23 (182)
139 1qhx_A CPT, protein (chloramph 24.8 19 0.00063 26.3 0.4 13 108-120 6-18 (178)
140 2qt1_A Nicotinamide riboside k 24.7 19 0.00066 27.3 0.5 14 109-122 25-38 (207)
141 2if2_A Dephospho-COA kinase; a 24.5 20 0.00067 27.0 0.5 16 108-123 4-19 (204)
142 1x3s_A RAS-related protein RAB 24.5 30 0.001 24.9 1.5 22 98-119 8-29 (195)
143 2qag_C Septin-7; cell cycle, c 24.4 18 0.00063 32.7 0.4 14 109-122 35-48 (418)
144 3ihw_A Centg3; RAS, centaurin, 24.2 19 0.00065 26.8 0.4 12 108-119 23-34 (184)
145 1lw7_A Transcriptional regulat 24.1 15 0.00052 31.2 -0.2 20 107-126 172-191 (365)
146 2oil_A CATX-8, RAS-related pro 24.0 19 0.00066 26.3 0.4 12 108-119 28-39 (193)
147 1mky_A Probable GTP-binding pr 24.0 19 0.00065 31.6 0.4 13 108-120 183-195 (439)
148 3trf_A Shikimate kinase, SK; a 23.9 20 0.00067 26.5 0.4 13 108-120 8-20 (185)
149 2cxx_A Probable GTP-binding pr 23.9 21 0.00072 25.6 0.6 12 109-120 5-16 (190)
150 3kb2_A SPBC2 prophage-derived 23.8 20 0.0007 25.6 0.5 13 109-121 5-17 (173)
151 3cbq_A GTP-binding protein REM 23.7 20 0.00068 27.1 0.4 12 108-119 26-37 (195)
152 2dyk_A GTP-binding protein; GT 23.7 20 0.00069 24.9 0.4 13 108-120 4-16 (161)
153 1z0f_A RAB14, member RAS oncog 23.6 20 0.0007 25.2 0.4 12 108-119 18-29 (179)
154 3bwd_D RAC-like GTP-binding pr 23.5 20 0.0007 25.5 0.4 12 108-119 11-22 (182)
155 3qf4_A ABC transporter, ATP-bi 23.5 20 0.00068 33.1 0.5 18 108-125 372-389 (587)
156 1x50_A Galectin-4; GAL-BIND le 23.5 1.6E+02 0.0056 23.4 5.8 24 116-139 105-128 (164)
157 1moz_A ARL1, ADP-ribosylation 23.3 21 0.00071 25.6 0.4 12 108-119 21-32 (183)
158 3b5x_A Lipid A export ATP-bind 23.3 20 0.00068 32.8 0.4 17 108-124 372-388 (582)
159 3tui_C Methionine import ATP-b 23.1 20 0.00069 32.3 0.4 16 110-125 59-74 (366)
160 2ged_A SR-beta, signal recogni 23.1 21 0.00072 26.0 0.4 13 108-120 51-63 (193)
161 3t1o_A Gliding protein MGLA; G 23.0 21 0.00072 25.6 0.4 12 108-119 17-28 (198)
162 3kkq_A RAS-related protein M-R 22.9 21 0.00073 25.6 0.4 12 108-119 21-32 (183)
163 4a82_A Cystic fibrosis transme 22.9 21 0.0007 32.8 0.4 17 108-124 370-386 (578)
164 2lkc_A Translation initiation 22.9 21 0.00072 25.3 0.4 13 108-120 11-23 (178)
165 3t61_A Gluconokinase; PSI-biol 22.9 21 0.00072 27.0 0.4 14 108-121 21-34 (202)
166 3ec2_A DNA replication protein 22.9 20 0.00069 26.6 0.3 19 107-125 40-58 (180)
167 1z06_A RAS-related protein RAB 22.8 21 0.00073 26.1 0.4 12 108-119 23-34 (189)
168 2vp4_A Deoxynucleoside kinase; 22.8 21 0.00072 28.1 0.4 17 108-124 23-39 (230)
169 3t5d_A Septin-7; GTP-binding p 22.8 22 0.00075 28.8 0.5 12 108-119 11-22 (274)
170 1htw_A HI0065; nucleotide-bind 22.6 21 0.00073 27.6 0.4 19 108-126 36-54 (158)
171 1m2o_B GTP-binding protein SAR 22.6 22 0.00077 26.5 0.5 12 108-119 26-37 (190)
172 2jeo_A Uridine-cytidine kinase 22.6 22 0.00074 28.3 0.4 18 108-125 28-45 (245)
173 1jjv_A Dephospho-COA kinase; P 22.6 21 0.00073 26.9 0.4 17 108-124 5-21 (206)
174 3oes_A GTPase rhebl1; small GT 22.5 23 0.00078 26.4 0.5 12 108-119 27-38 (201)
175 2pez_A Bifunctional 3'-phospho 22.5 22 0.00075 26.4 0.4 16 108-123 8-23 (179)
176 3vaa_A Shikimate kinase, SK; s 22.4 22 0.00074 27.1 0.4 14 108-121 28-41 (199)
177 4ag6_A VIRB4 ATPase, type IV s 22.2 18 0.00061 30.8 -0.1 19 108-126 38-56 (392)
178 4djt_A GTP-binding nuclear pro 22.2 22 0.00076 26.6 0.4 12 108-119 14-25 (218)
179 1g29_1 MALK, maltose transport 22.1 22 0.00075 31.6 0.4 17 109-125 33-49 (372)
180 3pqc_A Probable GTP-binding pr 22.0 24 0.00082 25.3 0.6 12 108-119 26-37 (195)
181 2yyz_A Sugar ABC transporter, 21.9 22 0.00076 31.6 0.4 17 109-125 33-49 (359)
182 1qmj_A Beta-galactoside-bindin 21.9 58 0.002 24.8 2.7 23 116-139 80-102 (132)
183 2rcn_A Probable GTPase ENGC; Y 21.9 22 0.00076 31.8 0.4 18 108-125 218-235 (358)
184 3reg_A RHO-like small GTPase; 21.7 23 0.00079 26.0 0.4 12 108-119 26-37 (194)
185 1ww7_A Galectin; carbohydrate 21.6 1.7E+02 0.006 23.7 5.7 20 117-136 99-118 (160)
186 2xtp_A GTPase IMAP family memb 21.6 24 0.00082 27.8 0.5 13 108-120 25-37 (260)
187 2gf0_A GTP-binding protein DI- 21.5 25 0.00084 25.5 0.5 12 108-119 11-22 (199)
188 2efe_B Small GTP-binding prote 21.5 23 0.0008 25.1 0.4 12 108-119 15-26 (181)
189 2aka_B Dynamin-1; fusion prote 21.3 25 0.00085 27.9 0.5 12 108-119 29-40 (299)
190 2qu8_A Putative nucleolar GTP- 21.1 24 0.00083 27.1 0.4 12 108-119 32-43 (228)
191 1z47_A CYSA, putative ABC-tran 21.1 24 0.00081 31.4 0.4 16 110-125 46-61 (355)
192 3aez_A Pantothenate kinase; tr 21.0 24 0.00081 30.3 0.4 19 109-127 94-112 (312)
193 2it1_A 362AA long hypothetical 21.0 24 0.00082 31.4 0.4 17 109-125 33-49 (362)
194 4e22_A Cytidylate kinase; P-lo 20.9 24 0.00083 28.4 0.4 16 108-123 30-45 (252)
195 2bov_A RAla, RAS-related prote 20.9 25 0.00084 25.7 0.4 12 108-119 17-28 (206)
196 4bas_A ADP-ribosylation factor 20.9 24 0.00084 25.6 0.4 12 108-119 20-31 (199)
197 2iwr_A Centaurin gamma 1; ANK 20.9 20 0.00067 25.7 -0.1 12 108-119 10-21 (178)
198 1v43_A Sugar-binding transport 20.8 24 0.00082 31.5 0.4 16 110-125 42-57 (372)
199 2rhm_A Putative kinase; P-loop 20.8 26 0.00089 25.7 0.5 14 108-121 8-21 (193)
200 1m7b_A RND3/RHOE small GTP-bin 20.8 26 0.00089 25.6 0.5 12 108-119 10-21 (184)
201 2gco_A H9, RHO-related GTP-bin 20.7 46 0.0016 24.8 1.9 29 88-119 11-39 (201)
202 2yc2_C IFT27, small RAB-relate 20.6 23 0.00077 25.8 0.2 13 108-120 23-35 (208)
203 1e69_A Chromosome segregation 20.6 43 0.0015 28.0 1.9 14 108-121 27-40 (322)
204 1jbk_A CLPB protein; beta barr 20.6 25 0.00086 24.7 0.4 17 107-123 45-61 (195)
205 1ko7_A HPR kinase/phosphatase; 20.5 26 0.00088 31.1 0.5 12 108-119 147-158 (314)
206 3gd7_A Fusion complex of cysti 20.5 26 0.00087 31.6 0.5 17 109-125 51-67 (390)
207 2fg5_A RAB-22B, RAS-related pr 20.5 33 0.0011 25.3 1.0 13 107-119 25-37 (192)
208 2cjw_A GTP-binding protein GEM 20.4 25 0.00087 26.4 0.4 12 108-119 9-20 (192)
209 3llu_A RAS-related GTP-binding 20.4 27 0.00091 26.0 0.5 12 108-119 23-34 (196)
210 4gzl_A RAS-related C3 botulinu 20.3 27 0.00092 26.3 0.5 12 108-119 33-44 (204)
211 2il1_A RAB12; G-protein, GDP, 20.3 26 0.00088 26.0 0.4 12 108-119 29-40 (192)
212 2qm8_A GTPase/ATPase; G protei 20.3 25 0.00086 30.2 0.4 18 108-125 58-75 (337)
213 2gza_A Type IV secretion syste 20.2 26 0.00091 30.3 0.5 18 109-126 179-196 (361)
214 2dr3_A UPF0273 protein PH0284; 20.2 27 0.00092 26.4 0.5 68 195-266 163-237 (247)
215 2hf9_A Probable hydrogenase ni 20.1 27 0.00093 26.3 0.5 12 108-119 41-52 (226)
216 1yjd_C TP44, T-cell-specific s 20.1 2.4E+02 0.0083 21.9 6.0 73 42-135 20-100 (140)
No 1
>1eaq_A RUNT-related transcription factor 1; transcription/DNA, acute myeloid leukemia, AML, RUNX1, RUNT domain, chloride binding, IG fold; HET: MSE; 1.25A {Mus musculus} SCOP: b.2.5.6 PDB: 1ean_A 1eao_A* 2j6w_A 1e50_A 1h9d_A* 1ljm_A 1cmo_A 1hjc_A* 1hjb_C* 1io4_C 1co1_A
Probab=100.00 E-value=8.7e-73 Score=467.17 Aligned_cols=124 Identities=61% Similarity=0.904 Sum_probs=110.9
Q ss_pred hhhhhhHHhhcCCCCccccCCCceEEeecCcccccCCCCCcceEEEEeeecCCCeEEEEeecCCCccccccccceeeecc
Q psy3060 21 AERTLDSLLAEHPGELTRTGCPHVVCTVLPTHWRSNKTLPVAFKVVALGDVMDGTIVTIRAGNDENYCGELRNCTAVMKN 100 (268)
Q Consensus 21 ~er~l~~~l~eh~geLV~T~sP~~lCs~LP~HWRsNKtLP~aFkVvaLg~VpDGT~Vtv~AGNDEN~~AELRN~tAvMKN 100 (268)
+||++.|+|+|||||||+||||||+||+||+||||||+||++|||||||+|||||+|||+|||||||||||||++|+|||
T Consensus 2 ~er~~~e~l~~~~gelv~T~sP~~~cs~LP~HWRsNKtLP~~FkVvalg~V~DGT~Vtv~AGNDEn~~aelrN~~a~mkn 81 (140)
T 1eaq_A 2 GDRSMVEVLADHPGELVRTDSPNFLSSVLPTHWRSNKTLPIAFKVVALGDVPDGTLVTVMAGNDENYSAELRNATAAMKN 81 (140)
T ss_dssp ---CHHHHHHHSTTTCEECSSTTEEECCCCSEEETTCCCSSCCEEEESSCCCTTCEEEEEEEETTEEEECEESCEEEEET
T ss_pred cchhHHHHHhhCCCceEecCCCCEEEccCcchhccCCCCCCceEEEEecccCCCCEEEEEecCCcchhHHHHhHHHHHhh
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeeecceeeeeccCCCceeeceEee-------eeeeeEEee-------ecCcccchh
Q psy3060 101 QVAKFNDLRFVGRSGREAEASPKDWV-------GTLIWLIGI-------KNKHQQYEI 144 (268)
Q Consensus 101 qVArFNDLRFVGRSGRGKsFtlti~v-------~t~~~~i~v-------~~~hrq~~~ 144 (268)
||||||||||||||||||||+|||+| +||++|||| ||+|||+.+
T Consensus 82 qvA~FnDLRFvgRSGRGKsFtlTItv~t~PpqvAty~~AIKVTVDGPRePR~~rqk~~ 139 (140)
T 1eaq_A 82 QVARFNDLRFVGRSGRGKSFTLTITVFTNPPQVATYHRAIKITVDGPREPRRHRQKLD 139 (140)
T ss_dssp TEEECSSCEECSCCCTTCCBEEEEEECSSSCEEEECSSCBEEESSCC-----------
T ss_pred ccceeecccccccCCCCccEEEEEEEecCCcchhhheeeEEEEecCCCCCcccccccC
Confidence 99999999999999999999999996 889999999 688888654
No 2
>2zhn_A Galectin-9; beta sandwich, carbohydrate binding protein, sugar protein; HET: NAG GAL; 1.30A {Homo sapiens} PDB: 2eak_A* 2eal_A* 2zhk_A* 2zhm_A* 2zhl_A* 2yy1_A* 3lsd_A 3lse_A*
Probab=76.05 E-value=5.6 Score=31.05 Aligned_cols=22 Identities=5% Similarity=-0.118 Sum_probs=18.9
Q ss_pred CCceeeceEeeeeeeeEEeeec
Q psy3060 116 REAEASPKDWVGTLIWLIGIKN 137 (268)
Q Consensus 116 RGKsFtlti~v~t~~~~i~v~~ 137 (268)
+|+.|+|+|.+....-.|.|..
T Consensus 95 ~G~~F~l~i~~~~~~f~V~vng 116 (148)
T 2zhn_A 95 KGMPFDLCFLVQSSDFKVMVNG 116 (148)
T ss_dssp TTCEEEEEEEECSSEEEEEETT
T ss_pred CCCeEEEEEEEcCCEEEEEECC
Confidence 7999999999988888888754
No 3
>3nv1_A Galectin-9, galectin 9 short isoform variant; sugar binding, sugar binding protein; 1.50A {Homo sapiens} SCOP: b.29.1.0 PDB: 3nv2_A* 3nv3_A* 3nv4_A*
Probab=52.40 E-value=45 Score=25.68 Aligned_cols=22 Identities=9% Similarity=-0.064 Sum_probs=18.9
Q ss_pred CCceeeceEeeeeeeeEEeeec
Q psy3060 116 REAEASPKDWVGTLIWLIGIKN 137 (268)
Q Consensus 116 RGKsFtlti~v~t~~~~i~v~~ 137 (268)
+|+.|+|+|.+....-.|.|.-
T Consensus 85 ~G~~F~l~I~~~~~~f~V~vng 106 (138)
T 3nv1_A 85 RGQSFSVWILCEAHCLKVAVDG 106 (138)
T ss_dssp TTCEEEEEEEECSSEEEEEETT
T ss_pred CCCeEEEEEEEccceEEEEECC
Confidence 8999999999988888888744
No 4
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=49.55 E-value=4.1 Score=30.89 Aligned_cols=17 Identities=24% Similarity=0.407 Sum_probs=13.9
Q ss_pred eeeeeccCCCceeeceE
Q psy3060 108 LRFVGRSGREAEASPKD 124 (268)
Q Consensus 108 LRFVGRSGRGKsFtlti 124 (268)
+=++|.||.|||-.+..
T Consensus 12 ~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 12 VVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp EEEECCTTSCHHHHHHH
T ss_pred EEEECCCCCCHHHHHHH
Confidence 34799999999987774
No 5
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=48.90 E-value=4.5 Score=33.90 Aligned_cols=17 Identities=24% Similarity=0.311 Sum_probs=12.7
Q ss_pred eeeeeccCCCceeeceE
Q psy3060 108 LRFVGRSGREAEASPKD 124 (268)
Q Consensus 108 LRFVGRSGRGKsFtlti 124 (268)
+=+||+||.|||=-|.+
T Consensus 5 v~lvG~nGaGKSTLln~ 21 (270)
T 3sop_A 5 IMVVGQSGLGKSTLVNT 21 (270)
T ss_dssp EEEEESSSSSHHHHHHH
T ss_pred EEEECCCCCCHHHHHHH
Confidence 44799999999854443
No 6
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=47.65 E-value=4.8 Score=29.96 Aligned_cols=15 Identities=27% Similarity=0.457 Sum_probs=12.0
Q ss_pred eeeeeccCCCceeec
Q psy3060 108 LRFVGRSGREAEASP 122 (268)
Q Consensus 108 LRFVGRSGRGKsFtl 122 (268)
+=++|++|.|||=-+
T Consensus 29 v~lvG~~g~GKSTLl 43 (210)
T 1pui_A 29 VAFAGRSNAGKSSAL 43 (210)
T ss_dssp EEEEECTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 458999999998433
No 7
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=47.35 E-value=4.7 Score=31.39 Aligned_cols=21 Identities=19% Similarity=0.191 Sum_probs=15.7
Q ss_pred eeeeeccCCCceeeceEeeee
Q psy3060 108 LRFVGRSGREAEASPKDWVGT 128 (268)
Q Consensus 108 LRFVGRSGRGKsFtlti~v~t 128 (268)
+=++|.||.|||=.+.+..+-
T Consensus 7 i~lvGpsGaGKSTLl~~L~~~ 27 (198)
T 1lvg_A 7 VVLSGPSGAGKSTLLKKLFQE 27 (198)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHhh
Confidence 348999999999766665543
No 8
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=46.36 E-value=5 Score=31.04 Aligned_cols=19 Identities=11% Similarity=0.017 Sum_probs=14.4
Q ss_pred eeeeeccCCCceeeceEee
Q psy3060 108 LRFVGRSGREAEASPKDWV 126 (268)
Q Consensus 108 LRFVGRSGRGKsFtlti~v 126 (268)
+=++|.||.|||=.+.+..
T Consensus 23 ~~l~GpnGsGKSTLl~~l~ 41 (207)
T 1znw_A 23 VVLSGPSAVGKSTVVRCLR 41 (207)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 4579999999996655443
No 9
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=46.25 E-value=7 Score=28.19 Aligned_cols=22 Identities=14% Similarity=0.250 Sum_probs=14.5
Q ss_pred eccceeeecceeeeeccCCCce
Q psy3060 98 MKNQVAKFNDLRFVGRSGREAE 119 (268)
Q Consensus 98 MKNqVArFNDLRFVGRSGRGKs 119 (268)
|.++..+-=.+=++|.+|.|||
T Consensus 3 m~~~~~~~~ki~v~G~~~~GKS 24 (186)
T 2bme_A 3 MSETYDFLFKFLVIGNAGTGKS 24 (186)
T ss_dssp -CCCCSEEEEEEEEESTTSSHH
T ss_pred cccccccceEEEEECCCCCCHH
Confidence 4444333334678999999998
No 10
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=45.51 E-value=5.2 Score=31.70 Aligned_cols=20 Identities=25% Similarity=0.245 Sum_probs=14.5
Q ss_pred eeeeeccCCCceeeceEeee
Q psy3060 108 LRFVGRSGREAEASPKDWVG 127 (268)
Q Consensus 108 LRFVGRSGRGKsFtlti~v~ 127 (268)
+=++|.||.|||=.+.+..+
T Consensus 26 ~~lvGpsGsGKSTLl~~L~g 45 (218)
T 1z6g_A 26 LVICGPSGVGKGTLIKKLLN 45 (218)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 34799999999966555443
No 11
>2d6m_A Galectin-9, lectin, galactose binding, soluble 9; beta sandwich, carbohydrate binding protein, sugar binding protein; HET: LBT; 1.60A {Mus musculus} PDB: 2d6l_X 2d6k_A* 2d6n_A* 2d6p_A* 2d6o_X*
Probab=44.55 E-value=49 Score=26.19 Aligned_cols=22 Identities=5% Similarity=-0.126 Sum_probs=18.8
Q ss_pred CCceeeceEeeeeeeeEEeeec
Q psy3060 116 REAEASPKDWVGTLIWLIGIKN 137 (268)
Q Consensus 116 RGKsFtlti~v~t~~~~i~v~~ 137 (268)
+|+.|+|+|.+.-..-.|.|..
T Consensus 96 ~G~~F~l~I~~~~~~f~V~Vng 117 (159)
T 2d6m_A 96 KGMPFELCFLVQRSEFKVMVNK 117 (159)
T ss_dssp TTCEEEEEEEECSSEEEEEETT
T ss_pred CCCcEEEEEEEeCCEEEEEECC
Confidence 7999999999988888888754
No 12
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=44.21 E-value=8.7 Score=32.60 Aligned_cols=17 Identities=12% Similarity=0.282 Sum_probs=13.1
Q ss_pred eeeeccCCCceeeceEe
Q psy3060 109 RFVGRSGREAEASPKDW 125 (268)
Q Consensus 109 RFVGRSGRGKsFtlti~ 125 (268)
=.+|.||.|||=-|.+.
T Consensus 38 ~iiGpnGsGKSTLl~~l 54 (275)
T 3gfo_A 38 AILGGNGVGKSTLFQNF 54 (275)
T ss_dssp EEECCTTSSHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHH
Confidence 36899999999665544
No 13
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=43.62 E-value=6.4 Score=30.43 Aligned_cols=19 Identities=11% Similarity=0.219 Sum_probs=13.9
Q ss_pred eeeeeccCCCceeeceEee
Q psy3060 108 LRFVGRSGREAEASPKDWV 126 (268)
Q Consensus 108 LRFVGRSGRGKsFtlti~v 126 (268)
+-.+|.||.|||=-+.+..
T Consensus 25 v~I~G~sGsGKSTl~~~l~ 43 (208)
T 3c8u_A 25 VALSGAPGSGKSTLSNPLA 43 (208)
T ss_dssp EEEECCTTSCTHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 3478999999996554443
No 14
>2yro_A Galectin-8; GAL-BIND lectin, sugar binding, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=42.56 E-value=55 Score=25.84 Aligned_cols=22 Identities=0% Similarity=-0.100 Sum_probs=18.6
Q ss_pred CCceeeceEeeeeeeeEEeeec
Q psy3060 116 REAEASPKDWVGTLIWLIGIKN 137 (268)
Q Consensus 116 RGKsFtlti~v~t~~~~i~v~~ 137 (268)
+|+.|+|+|.+.-..-.|.|..
T Consensus 95 ~G~~F~l~I~~~~~~f~V~VNg 116 (155)
T 2yro_A 95 PGMYFEMIIYCDVREFKVAVNG 116 (155)
T ss_dssp TTSEEEEEEEECSSEEEEEETT
T ss_pred CCCeEEEEEEEcCCEEEEEECC
Confidence 6999999999988888888754
No 15
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=42.33 E-value=6.6 Score=29.57 Aligned_cols=19 Identities=11% Similarity=0.118 Sum_probs=14.6
Q ss_pred eeeeeccCCCceeeceEee
Q psy3060 108 LRFVGRSGREAEASPKDWV 126 (268)
Q Consensus 108 LRFVGRSGRGKsFtlti~v 126 (268)
+=++|.||.|||-.+....
T Consensus 28 ~~l~G~nGsGKSTll~~l~ 46 (231)
T 4a74_A 28 TEVFGEFGSGKTQLAHTLA 46 (231)
T ss_dssp EEEEESTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 3478999999997766554
No 16
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=42.27 E-value=6.3 Score=29.90 Aligned_cols=17 Identities=12% Similarity=0.161 Sum_probs=12.7
Q ss_pred eeeeccCCCceeeceEe
Q psy3060 109 RFVGRSGREAEASPKDW 125 (268)
Q Consensus 109 RFVGRSGRGKsFtlti~ 125 (268)
=++|-||.|||=-+..-
T Consensus 9 ~i~GpsGsGKSTL~~~L 25 (180)
T 1kgd_A 9 VLLGAHGVGRRHIKNTL 25 (180)
T ss_dssp EEECCTTSSHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHH
Confidence 47899999998554443
No 17
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=41.97 E-value=6.3 Score=29.14 Aligned_cols=13 Identities=31% Similarity=0.534 Sum_probs=10.7
Q ss_pred eeeeeccCCCcee
Q psy3060 108 LRFVGRSGREAEA 120 (268)
Q Consensus 108 LRFVGRSGRGKsF 120 (268)
+=++|+||.|||=
T Consensus 5 v~ivG~~gvGKSt 17 (184)
T 2zej_A 5 LMIVGNTGSGKTT 17 (184)
T ss_dssp EEEESCTTSSHHH
T ss_pred EEEECCCCCCHHH
Confidence 3489999999983
No 18
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=41.91 E-value=6.4 Score=29.41 Aligned_cols=19 Identities=16% Similarity=0.149 Sum_probs=14.0
Q ss_pred eeeeeccCCCceeeceEee
Q psy3060 108 LRFVGRSGREAEASPKDWV 126 (268)
Q Consensus 108 LRFVGRSGRGKsFtlti~v 126 (268)
+=++|-||.|||=.+.+..
T Consensus 10 i~l~Gp~GsGKSTl~~~L~ 28 (205)
T 3tr0_A 10 FIISAPSGAGKTSLVRALV 28 (205)
T ss_dssp EEEECCTTSCHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHH
Confidence 3478999999996555443
No 19
>2wkk_A Galectin-2; sugar-binding protein, secreted, cell WALL, sugar binding, sugar binding protein, beta-galactoside binding lectin, fruiting BODY; HET: GAL NAG FUC; 1.50A {Coprinopsis cinerea} PDB: 1ulc_A* 1ul9_A* 1ule_A* 1ulf_A* 1ulg_A* 1uld_A*
Probab=41.64 E-value=90 Score=24.61 Aligned_cols=24 Identities=13% Similarity=-0.100 Sum_probs=19.9
Q ss_pred CCceeeceEeeeeeeeEEeeecCc
Q psy3060 116 REAEASPKDWVGTLIWLIGIKNKH 139 (268)
Q Consensus 116 RGKsFtlti~v~t~~~~i~v~~~h 139 (268)
+|+.|+|+|.+.-..-.|.|..+|
T Consensus 85 ~G~~F~l~I~~~~~~f~V~VNg~~ 108 (150)
T 2wkk_A 85 RPPNPSITVIDHGDRFQIRFDYGT 108 (150)
T ss_dssp CSSSCEEEEEECSSEEEEECSSSC
T ss_pred CCCCEEEEEEECCCEEEEEECCEE
Confidence 799999999998888888885433
No 20
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=40.38 E-value=7.4 Score=28.78 Aligned_cols=12 Identities=17% Similarity=0.318 Sum_probs=10.4
Q ss_pred eeeeeccCCCce
Q psy3060 108 LRFVGRSGREAE 119 (268)
Q Consensus 108 LRFVGRSGRGKs 119 (268)
+=+||++|.|||
T Consensus 7 i~ivG~~g~GKS 18 (172)
T 2gj8_A 7 VVIAGRPNAGKS 18 (172)
T ss_dssp EEEEESTTSSHH
T ss_pred EEEECCCCCCHH
Confidence 348999999998
No 21
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=40.37 E-value=7 Score=30.58 Aligned_cols=17 Identities=18% Similarity=0.157 Sum_probs=13.1
Q ss_pred eeeeccCCCceeeceEe
Q psy3060 109 RFVGRSGREAEASPKDW 125 (268)
Q Consensus 109 RFVGRSGRGKsFtlti~ 125 (268)
=++|.||.|||-.+.+.
T Consensus 4 ~l~G~nGsGKTTLl~~l 20 (178)
T 1ye8_A 4 IITGEPGVGKTTLVKKI 20 (178)
T ss_dssp EEECCTTSSHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHH
Confidence 36899999999765433
No 22
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=40.11 E-value=7.3 Score=31.47 Aligned_cols=17 Identities=18% Similarity=0.141 Sum_probs=12.7
Q ss_pred eeeeccCCCceeeceEe
Q psy3060 109 RFVGRSGREAEASPKDW 125 (268)
Q Consensus 109 RFVGRSGRGKsFtlti~ 125 (268)
=.+|.||.|||=-|.+.
T Consensus 34 ~iiG~nGsGKSTLl~~l 50 (224)
T 2pcj_A 34 SIIGASGSGKSTLLYIL 50 (224)
T ss_dssp EEEECTTSCHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHH
Confidence 46899999999555443
No 23
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=40.05 E-value=7.5 Score=28.79 Aligned_cols=14 Identities=21% Similarity=0.297 Sum_probs=11.1
Q ss_pred eeeeccCCCceeec
Q psy3060 109 RFVGRSGREAEASP 122 (268)
Q Consensus 109 RFVGRSGRGKsFtl 122 (268)
=++|.||.|||=-|
T Consensus 30 ~i~G~NGsGKStll 43 (182)
T 3kta_A 30 AIVGANGSGKSNIG 43 (182)
T ss_dssp EEEECTTSSHHHHH
T ss_pred EEECCCCCCHHHHH
Confidence 37899999998433
No 24
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=39.45 E-value=8 Score=39.54 Aligned_cols=12 Identities=42% Similarity=0.559 Sum_probs=10.4
Q ss_pred eeeeeccCCCce
Q psy3060 108 LRFVGRSGREAE 119 (268)
Q Consensus 108 LRFVGRSGRGKs 119 (268)
+=+|||||.|||
T Consensus 1108 vaIVG~SGsGKS 1119 (1321)
T 4f4c_A 1108 LALVGPSGCGKS 1119 (1321)
T ss_dssp EEEECSTTSSTT
T ss_pred EEEECCCCChHH
Confidence 347999999998
No 25
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=38.79 E-value=7.8 Score=28.14 Aligned_cols=13 Identities=8% Similarity=0.325 Sum_probs=10.8
Q ss_pred eeeeeccCCCcee
Q psy3060 108 LRFVGRSGREAEA 120 (268)
Q Consensus 108 LRFVGRSGRGKsF 120 (268)
+=++|++|.|||=
T Consensus 6 v~lvG~~gvGKSt 18 (165)
T 2wji_A 6 IALIGNPNVGKST 18 (165)
T ss_dssp EEEECSTTSSHHH
T ss_pred EEEECCCCCCHHH
Confidence 4589999999983
No 26
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=38.61 E-value=7.7 Score=28.88 Aligned_cols=18 Identities=22% Similarity=0.226 Sum_probs=13.4
Q ss_pred eeeeeccCCCceeeceEe
Q psy3060 108 LRFVGRSGREAEASPKDW 125 (268)
Q Consensus 108 LRFVGRSGRGKsFtlti~ 125 (268)
+=++|-||.|||-.+.+.
T Consensus 9 i~l~G~~GsGKSTl~~~L 26 (207)
T 2j41_A 9 IVLSGPSGVGKGTVRKRI 26 (207)
T ss_dssp EEEECSTTSCHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHH
Confidence 347899999998655443
No 27
>3zsj_A Galectin-3; sugar binding protein; HET: LAT; 0.86A {Homo sapiens} SCOP: b.29.1.3 PDB: 2nmn_A* 2nn8_A* 2nmo_A* 3t1m_A* 3t1l_A* 1kjl_A* 1kjr_A* 1a3k_A* 2xg3_A* 3zsk_A 3zsl_A 3zsm_A 3ayc_A* 3aya_A* 3ayd_A* 3aye_A*
Probab=38.09 E-value=82 Score=24.18 Aligned_cols=22 Identities=5% Similarity=-0.014 Sum_probs=19.1
Q ss_pred CCceeeceEeeeeeeeEEeeec
Q psy3060 116 REAEASPKDWVGTLIWLIGIKN 137 (268)
Q Consensus 116 RGKsFtlti~v~t~~~~i~v~~ 137 (268)
+|+.|+|+|.+....-.|.|..
T Consensus 82 ~G~~F~l~I~~~~~~f~V~vng 103 (138)
T 3zsj_A 82 SGKPFKIQVLVEPDHFKVAVND 103 (138)
T ss_dssp TTCEEEEEEEECSSEEEEEETT
T ss_pred CCCeEEEEEEEccceEEEEECC
Confidence 8999999999988888888754
No 28
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=37.49 E-value=8.7 Score=29.14 Aligned_cols=20 Identities=5% Similarity=0.126 Sum_probs=14.5
Q ss_pred eeeeeccCCCceeeceEeee
Q psy3060 108 LRFVGRSGREAEASPKDWVG 127 (268)
Q Consensus 108 LRFVGRSGRGKsFtlti~v~ 127 (268)
+=.+|.||.|||=-+.+..+
T Consensus 9 i~i~G~~GsGKSTl~~~l~~ 28 (211)
T 3asz_A 9 IGIAGGTASGKTTLAQALAR 28 (211)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 44789999999966554433
No 29
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=37.48 E-value=8.2 Score=31.44 Aligned_cols=17 Identities=24% Similarity=0.186 Sum_probs=12.8
Q ss_pred eeeeccCCCceeeceEe
Q psy3060 109 RFVGRSGREAEASPKDW 125 (268)
Q Consensus 109 RFVGRSGRGKsFtlti~ 125 (268)
=.+|+||.|||=-|.+.
T Consensus 32 ~i~G~nGsGKSTLl~~l 48 (243)
T 1mv5_A 32 AFAGPSGGGKSTIFSLL 48 (243)
T ss_dssp EEECCTTSSHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHH
Confidence 46899999999655543
No 30
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=37.24 E-value=8.4 Score=29.24 Aligned_cols=18 Identities=22% Similarity=0.244 Sum_probs=14.0
Q ss_pred eeeccCCCceeeceEeee
Q psy3060 110 FVGRSGREAEASPKDWVG 127 (268)
Q Consensus 110 FVGRSGRGKsFtlti~v~ 127 (268)
++|-||.|||=.+.+..+
T Consensus 6 l~GpsGaGKsTl~~~L~~ 23 (186)
T 3a00_A 6 ISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp EESSSSSSHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHh
Confidence 789999999976665543
No 31
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=36.97 E-value=13 Score=26.75 Aligned_cols=15 Identities=27% Similarity=0.417 Sum_probs=8.4
Q ss_pred ceeeeeccCCCceee
Q psy3060 107 DLRFVGRSGREAEAS 121 (268)
Q Consensus 107 DLRFVGRSGRGKsFt 121 (268)
-+=++|.+|.|||=-
T Consensus 10 ki~v~G~~~~GKssl 24 (183)
T 2fu5_C 10 KLLLIGDSGVGKTCV 24 (183)
T ss_dssp EEEEECCCCC-----
T ss_pred EEEEECCCCCCHHHH
Confidence 366899999999743
No 32
>1uf3_A Hypothetical protein TT1561; metallo-dependent phosphatases, structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.10A {Thermus thermophilus} SCOP: d.159.1.6
Probab=36.82 E-value=36 Score=25.34 Aligned_cols=41 Identities=12% Similarity=0.103 Sum_probs=25.2
Q ss_pred eEEEEeecCCCcccc-ccccc---------eeeeccceeeec-ceeeeeccC
Q psy3060 75 TIVTIRAGNDENYCG-ELRNC---------TAVMKNQVAKFN-DLRFVGRSG 115 (268)
Q Consensus 75 T~Vtv~AGNDEN~~A-ELRN~---------tAvMKNqVArFN-DLRFVGRSG 115 (268)
..|.+..||-|.+.. .++.. ...+.++...++ +++|+|-.|
T Consensus 64 ~pv~~v~GNHD~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~g~~~ 115 (228)
T 1uf3_A 64 LPTAYVPGPQDAPIWEYLREAANVELVHPEMRNVHETFTFWRGPYLVAGVGG 115 (228)
T ss_dssp SCEEEECCTTSCSHHHHHHHHHHHHHHCTTEEECBTSEEEETTTEEEEEECS
T ss_pred CcEEEECCCCCchhHHHHHhhhhhhccCcceEEcccceEeeCCCcEEecCCC
Confidence 347788999887652 23222 234455566666 788888764
No 33
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=36.53 E-value=9.1 Score=28.34 Aligned_cols=18 Identities=17% Similarity=0.281 Sum_probs=13.8
Q ss_pred eeeeeccCCCceeeceEe
Q psy3060 108 LRFVGRSGREAEASPKDW 125 (268)
Q Consensus 108 LRFVGRSGRGKsFtlti~ 125 (268)
+=++|-||.|||=-+.+.
T Consensus 12 i~l~G~~GsGKSTl~~~L 29 (191)
T 1zp6_A 12 LLLSGHPGSGKSTIAEAL 29 (191)
T ss_dssp EEEEECTTSCHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHH
Confidence 457999999999655544
No 34
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=36.42 E-value=8.8 Score=31.63 Aligned_cols=16 Identities=38% Similarity=0.403 Sum_probs=12.6
Q ss_pred eeeccCCCceeeceEe
Q psy3060 110 FVGRSGREAEASPKDW 125 (268)
Q Consensus 110 FVGRSGRGKsFtlti~ 125 (268)
.+|+||.|||=-|.+.
T Consensus 40 i~G~nGsGKSTLl~~l 55 (247)
T 2ff7_A 40 IVGRSGSGKSTLTKLI 55 (247)
T ss_dssp EECSTTSSHHHHHHHH
T ss_pred EECCCCCCHHHHHHHH
Confidence 6899999999655544
No 35
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=36.16 E-value=9 Score=29.32 Aligned_cols=14 Identities=21% Similarity=0.283 Sum_probs=11.4
Q ss_pred eeeeeccCCCceee
Q psy3060 108 LRFVGRSGREAEAS 121 (268)
Q Consensus 108 LRFVGRSGRGKsFt 121 (268)
+=++|-||.|||=-
T Consensus 28 i~l~G~sGsGKSTl 41 (200)
T 3uie_A 28 IWVTGLSGSGKSTL 41 (200)
T ss_dssp EEEECSTTSSHHHH
T ss_pred EEEECCCCCCHHHH
Confidence 45789999999843
No 36
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=36.02 E-value=9.1 Score=29.15 Aligned_cols=16 Identities=25% Similarity=0.235 Sum_probs=12.6
Q ss_pred eeeeeccCCCceeece
Q psy3060 108 LRFVGRSGREAEASPK 123 (268)
Q Consensus 108 LRFVGRSGRGKsFtlt 123 (268)
+-++|.||.|||=-..
T Consensus 8 i~i~G~~GsGKSTl~~ 23 (227)
T 1cke_A 8 ITIDGPSGAGKGTLCK 23 (227)
T ss_dssp EEEECCTTSSHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 5589999999995443
No 37
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=35.94 E-value=9.1 Score=29.17 Aligned_cols=18 Identities=11% Similarity=0.322 Sum_probs=13.8
Q ss_pred eeeeccCCCceeeceEee
Q psy3060 109 RFVGRSGREAEASPKDWV 126 (268)
Q Consensus 109 RFVGRSGRGKsFtlti~v 126 (268)
=++|.||.|||-.+.+..
T Consensus 34 ~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 34 LLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp EEECCTTSSHHHHHHHHH
T ss_pred EEEeCCCCCHHHHHHHHH
Confidence 478999999997665443
No 38
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=35.79 E-value=9.1 Score=31.25 Aligned_cols=16 Identities=19% Similarity=0.206 Sum_probs=12.3
Q ss_pred eeeccCCCceeeceEe
Q psy3060 110 FVGRSGREAEASPKDW 125 (268)
Q Consensus 110 FVGRSGRGKsFtlti~ 125 (268)
.+|.||.|||=-|.+.
T Consensus 36 i~G~nGsGKSTLl~~l 51 (237)
T 2cbz_A 36 VVGQVGCGKSSLLSAL 51 (237)
T ss_dssp EECSTTSSHHHHHHHH
T ss_pred EECCCCCCHHHHHHHH
Confidence 5899999999655443
No 39
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=35.72 E-value=9.3 Score=27.67 Aligned_cols=13 Identities=8% Similarity=0.325 Sum_probs=11.0
Q ss_pred eeeeeccCCCcee
Q psy3060 108 LRFVGRSGREAEA 120 (268)
Q Consensus 108 LRFVGRSGRGKsF 120 (268)
+=++|.+|.|||=
T Consensus 10 i~lvG~~gvGKSt 22 (188)
T 2wjg_A 10 IALIGNPNVGKST 22 (188)
T ss_dssp EEEECSTTSSHHH
T ss_pred EEEECCCCCCHHH
Confidence 4589999999973
No 40
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=35.62 E-value=9.2 Score=27.85 Aligned_cols=17 Identities=18% Similarity=0.298 Sum_probs=12.8
Q ss_pred eeeeeccCCCceeeceE
Q psy3060 108 LRFVGRSGREAEASPKD 124 (268)
Q Consensus 108 LRFVGRSGRGKsFtlti 124 (268)
+=++|-||.|||--+.+
T Consensus 7 i~l~G~~GsGKSTl~~~ 23 (173)
T 1kag_A 7 IFLVGPMGAGKSTIGRQ 23 (173)
T ss_dssp EEEECCTTSCHHHHHHH
T ss_pred EEEECCCCCCHHHHHHH
Confidence 34789999999965443
No 41
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=35.60 E-value=9.2 Score=31.18 Aligned_cols=17 Identities=18% Similarity=0.155 Sum_probs=12.7
Q ss_pred eeeeccCCCceeeceEe
Q psy3060 109 RFVGRSGREAEASPKDW 125 (268)
Q Consensus 109 RFVGRSGRGKsFtlti~ 125 (268)
=.+|.||.|||=-|.+.
T Consensus 35 ~iiG~nGsGKSTLl~~l 51 (235)
T 3tif_A 35 SIMGPSGSGKSTMLNII 51 (235)
T ss_dssp EEECSTTSSHHHHHHHH
T ss_pred EEECCCCCcHHHHHHHH
Confidence 46899999999555443
No 42
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=34.48 E-value=9.9 Score=29.71 Aligned_cols=13 Identities=31% Similarity=0.626 Sum_probs=10.8
Q ss_pred eeeeeccCCCcee
Q psy3060 108 LRFVGRSGREAEA 120 (268)
Q Consensus 108 LRFVGRSGRGKsF 120 (268)
+=++|++|.|||=
T Consensus 32 i~lvG~~g~GKSt 44 (239)
T 3lxx_A 32 IVLVGKTGAGKSA 44 (239)
T ss_dssp EEEECCTTSSHHH
T ss_pred EEEECCCCCCHHH
Confidence 3489999999983
No 43
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=34.35 E-value=5.6 Score=36.35 Aligned_cols=51 Identities=12% Similarity=0.083 Sum_probs=28.2
Q ss_pred CCeEEEEeecCCCccc---cccccceeeeccceeeeccee----------eeeccCCCceeeceE
Q psy3060 73 DGTIVTIRAGNDENYC---GELRNCTAVMKNQVAKFNDLR----------FVGRSGREAEASPKD 124 (268)
Q Consensus 73 DGT~Vtv~AGNDEN~~---AELRN~tAvMKNqVArFNDLR----------FVGRSGRGKsFtlti 124 (268)
.|+.+.+...++..|. ++- ...-.++|-..+|.|++ .+|+||.|||=-+.+
T Consensus 94 ~~~~l~i~~~~~~e~~~~~~~~-~~mi~~~nl~~~y~~vsl~i~~Ge~v~IvGpnGsGKSTLlr~ 157 (460)
T 2npi_A 94 EETELLWKCPDLTTNTITVKPN-HTMKYIYNLHFMLEKIRMSNFEGPRVVIVGGSQTGKTSLSRT 157 (460)
T ss_dssp SSCEEEEECTTCCSSSCCCEEC-CTHHHHHHHHHHHHHHHHHSSSCCCEEEEESTTSSHHHHHHH
T ss_pred cceEEEEecCCccceeecCCCC-cchhhhhhhhehhhcCceEeCCCCEEEEECCCCCCHHHHHHH
Confidence 4455666666554444 221 11223344444555555 479999999965544
No 44
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=34.12 E-value=10 Score=26.22 Aligned_cols=12 Identities=17% Similarity=0.338 Sum_probs=10.5
Q ss_pred eeeeeccCCCce
Q psy3060 108 LRFVGRSGREAE 119 (268)
Q Consensus 108 LRFVGRSGRGKs 119 (268)
+=++|.+|.|||
T Consensus 6 i~v~G~~~~GKS 17 (167)
T 1kao_A 6 VVVLGSGGVGKS 17 (167)
T ss_dssp EEEECCTTSSHH
T ss_pred EEEECCCCCCHH
Confidence 458999999998
No 45
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=33.61 E-value=10 Score=28.27 Aligned_cols=17 Identities=18% Similarity=0.202 Sum_probs=13.1
Q ss_pred eeeeccCCCceeeceEe
Q psy3060 109 RFVGRSGREAEASPKDW 125 (268)
Q Consensus 109 RFVGRSGRGKsFtlti~ 125 (268)
=++|.||.|||=.+.+.
T Consensus 6 ~l~G~~GaGKSTl~~~L 22 (189)
T 2bdt_A 6 IITGPAGVGKSTTCKRL 22 (189)
T ss_dssp EEECSTTSSHHHHHHHH
T ss_pred EEECCCCCcHHHHHHHH
Confidence 37899999998765544
No 46
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=33.59 E-value=11 Score=34.37 Aligned_cols=19 Identities=11% Similarity=0.160 Sum_probs=14.8
Q ss_pred eeeeeccCCCceeeceEee
Q psy3060 108 LRFVGRSGREAEASPKDWV 126 (268)
Q Consensus 108 LRFVGRSGRGKsFtlti~v 126 (268)
+=++||||.|||=.|.+..
T Consensus 72 valvG~nGaGKSTLln~L~ 90 (413)
T 1tq4_A 72 VAVTGETGSGKSSFINTLR 90 (413)
T ss_dssp EEEEECTTSSHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHh
Confidence 5589999999997665544
No 47
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=32.99 E-value=11 Score=31.64 Aligned_cols=18 Identities=17% Similarity=0.095 Sum_probs=13.4
Q ss_pred eeeeeccCCCceeeceEe
Q psy3060 108 LRFVGRSGREAEASPKDW 125 (268)
Q Consensus 108 LRFVGRSGRGKsFtlti~ 125 (268)
+-++|.||.|||=.|.+.
T Consensus 172 v~l~G~sG~GKSTll~~l 189 (301)
T 1u0l_A 172 STMAGLSGVGKSSLLNAI 189 (301)
T ss_dssp EEEECSTTSSHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHh
Confidence 358999999998555443
No 48
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=32.84 E-value=11 Score=31.59 Aligned_cols=17 Identities=18% Similarity=0.229 Sum_probs=12.9
Q ss_pred eeeeccCCCceeeceEe
Q psy3060 109 RFVGRSGREAEASPKDW 125 (268)
Q Consensus 109 RFVGRSGRGKsFtlti~ 125 (268)
=.+|+||.|||=-|.+.
T Consensus 49 ~i~G~nGsGKSTLlk~l 65 (271)
T 2ixe_A 49 ALVGPNGSGKSTVAALL 65 (271)
T ss_dssp EEECSTTSSHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHH
Confidence 36899999999655544
No 49
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=32.81 E-value=11 Score=26.29 Aligned_cols=12 Identities=17% Similarity=0.255 Sum_probs=10.3
Q ss_pred eeeeeccCCCce
Q psy3060 108 LRFVGRSGREAE 119 (268)
Q Consensus 108 LRFVGRSGRGKs 119 (268)
+=++|.+|.|||
T Consensus 8 i~v~G~~~~GKs 19 (168)
T 1z2a_A 8 MVVVGNGAVGKS 19 (168)
T ss_dssp EEEECSTTSSHH
T ss_pred EEEECcCCCCHH
Confidence 448999999997
No 50
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=32.67 E-value=11 Score=28.20 Aligned_cols=13 Identities=23% Similarity=0.429 Sum_probs=10.8
Q ss_pred eeeeeccCCCcee
Q psy3060 108 LRFVGRSGREAEA 120 (268)
Q Consensus 108 LRFVGRSGRGKsF 120 (268)
+=++|.+|.|||=
T Consensus 8 v~lvG~~g~GKST 20 (199)
T 2f9l_A 8 VVLIGDSGVGKSN 20 (199)
T ss_dssp EEEESSTTSSHHH
T ss_pred EEEECcCCCCHHH
Confidence 4589999999983
No 51
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=32.65 E-value=11 Score=30.92 Aligned_cols=19 Identities=21% Similarity=0.298 Sum_probs=14.4
Q ss_pred eeeeccCCCceeeceEeee
Q psy3060 109 RFVGRSGREAEASPKDWVG 127 (268)
Q Consensus 109 RFVGRSGRGKsFtlti~v~ 127 (268)
=.+|.||.|||=-|.+..+
T Consensus 33 ~l~G~nGsGKSTLlk~l~G 51 (250)
T 2d2e_A 33 ALMGPNGAGKSTLGKILAG 51 (250)
T ss_dssp EEECSTTSSHHHHHHHHHT
T ss_pred EEECCCCCCHHHHHHHHhC
Confidence 3689999999966665544
No 52
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=32.62 E-value=12 Score=28.18 Aligned_cols=15 Identities=20% Similarity=0.275 Sum_probs=11.8
Q ss_pred eeeeeccCCCceeec
Q psy3060 108 LRFVGRSGREAEASP 122 (268)
Q Consensus 108 LRFVGRSGRGKsFtl 122 (268)
+=++|.+|.|||=-+
T Consensus 32 v~lvG~~g~GKSTLl 46 (191)
T 1oix_A 32 VVLIGDSGVGKSNLL 46 (191)
T ss_dssp EEEEECTTSSHHHHH
T ss_pred EEEECcCCCCHHHHH
Confidence 458999999998433
No 53
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=32.56 E-value=5.5 Score=31.45 Aligned_cols=20 Identities=20% Similarity=0.170 Sum_probs=14.9
Q ss_pred eeeeeccCCCceeeceEeee
Q psy3060 108 LRFVGRSGREAEASPKDWVG 127 (268)
Q Consensus 108 LRFVGRSGRGKsFtlti~v~ 127 (268)
+-+||.||.|||--+.....
T Consensus 5 v~IvG~SGsGKSTL~~~L~~ 24 (171)
T 2f1r_A 5 LSIVGTSDSGKTTLITRMMP 24 (171)
T ss_dssp EEEEESCHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 45799999999966655543
No 54
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=32.47 E-value=11 Score=31.25 Aligned_cols=16 Identities=25% Similarity=0.358 Sum_probs=12.5
Q ss_pred eeeccCCCceeeceEe
Q psy3060 110 FVGRSGREAEASPKDW 125 (268)
Q Consensus 110 FVGRSGRGKsFtlti~ 125 (268)
.+|.||.|||=-|.+.
T Consensus 51 i~G~nGsGKSTLl~~l 66 (260)
T 2ghi_A 51 LVGHTGSGKSTIAKLL 66 (260)
T ss_dssp EECSTTSSHHHHHHHH
T ss_pred EECCCCCCHHHHHHHH
Confidence 6899999999655544
No 55
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=32.39 E-value=13 Score=28.17 Aligned_cols=22 Identities=18% Similarity=0.320 Sum_probs=17.2
Q ss_pred cceeeeeccCCCceeeceEeee
Q psy3060 106 NDLRFVGRSGREAEASPKDWVG 127 (268)
Q Consensus 106 NDLRFVGRSGRGKsFtlti~v~ 127 (268)
+-+=++|.+|.|||.-+.+...
T Consensus 37 ~~~~l~G~~G~GKTtL~~~i~~ 58 (149)
T 2kjq_A 37 QFIYVWGEEGAGKSHLLQAWVA 58 (149)
T ss_dssp SEEEEESSSTTTTCHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4467899999999987766543
No 56
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=32.39 E-value=12 Score=25.74 Aligned_cols=13 Identities=38% Similarity=0.460 Sum_probs=10.9
Q ss_pred eeeeeccCCCcee
Q psy3060 108 LRFVGRSGREAEA 120 (268)
Q Consensus 108 LRFVGRSGRGKsF 120 (268)
+=++|.+|.|||=
T Consensus 6 i~v~G~~~~GKss 18 (166)
T 2ce2_X 6 LVVVGAGGVGKSA 18 (166)
T ss_dssp EEEEESTTSSHHH
T ss_pred EEEECCCCCCHHH
Confidence 4589999999973
No 57
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=32.27 E-value=11 Score=27.99 Aligned_cols=16 Identities=13% Similarity=0.189 Sum_probs=12.2
Q ss_pred eeeeccCCCceeeceE
Q psy3060 109 RFVGRSGREAEASPKD 124 (268)
Q Consensus 109 RFVGRSGRGKsFtlti 124 (268)
=++|++|.|||.-+..
T Consensus 27 ~i~G~~GsGKTtl~~~ 42 (235)
T 2w0m_A 27 ALTGEPGTGKTIFSLH 42 (235)
T ss_dssp EEECSTTSSHHHHHHH
T ss_pred EEEcCCCCCHHHHHHH
Confidence 4689999999965443
No 58
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=31.90 E-value=11 Score=30.49 Aligned_cols=18 Identities=11% Similarity=0.043 Sum_probs=13.3
Q ss_pred eeeeccCCCceeeceEee
Q psy3060 109 RFVGRSGREAEASPKDWV 126 (268)
Q Consensus 109 RFVGRSGRGKsFtlti~v 126 (268)
=++|.||.|||=-+.+..
T Consensus 20 ~l~GpsGsGKSTLlk~L~ 37 (219)
T 1s96_A 20 IVSAPSGAGKSSLIQALL 37 (219)
T ss_dssp EEECCTTSCHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHh
Confidence 478999999986555443
No 59
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=31.88 E-value=12 Score=30.39 Aligned_cols=17 Identities=12% Similarity=0.055 Sum_probs=12.6
Q ss_pred eeeeccCCCceeeceEe
Q psy3060 109 RFVGRSGREAEASPKDW 125 (268)
Q Consensus 109 RFVGRSGRGKsFtlti~ 125 (268)
=.+|.||.|||=-|.+.
T Consensus 38 ~i~G~nGsGKSTLl~~l 54 (229)
T 2pze_A 38 AVAGSTGAGKTSLLMMI 54 (229)
T ss_dssp EEECCTTSSHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHH
Confidence 36899999999555443
No 60
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=31.85 E-value=12 Score=30.97 Aligned_cols=18 Identities=11% Similarity=0.056 Sum_probs=13.4
Q ss_pred eeeeeccCCCceeeceEe
Q psy3060 108 LRFVGRSGREAEASPKDW 125 (268)
Q Consensus 108 LRFVGRSGRGKsFtlti~ 125 (268)
+=.+|.||.|||=-|.+.
T Consensus 27 ~~liG~nGsGKSTLl~~l 44 (240)
T 2onk_A 27 CVLLGPTGAGKSVFLELI 44 (240)
T ss_dssp EEEECCTTSSHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHH
Confidence 447899999999655443
No 61
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=31.80 E-value=12 Score=26.22 Aligned_cols=13 Identities=23% Similarity=0.406 Sum_probs=10.5
Q ss_pred eeeeeccCCCcee
Q psy3060 108 LRFVGRSGREAEA 120 (268)
Q Consensus 108 LRFVGRSGRGKsF 120 (268)
+=++|.+|.|||=
T Consensus 5 i~~vG~~~~GKSs 17 (166)
T 3q72_A 5 VLLLGAPGVGKSA 17 (166)
T ss_dssp EEEEESTTSSHHH
T ss_pred EEEECCCCCCHHH
Confidence 3479999999973
No 62
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=31.68 E-value=12 Score=29.74 Aligned_cols=15 Identities=27% Similarity=0.288 Sum_probs=11.8
Q ss_pred eeeeeccCCCceeec
Q psy3060 108 LRFVGRSGREAEASP 122 (268)
Q Consensus 108 LRFVGRSGRGKsFtl 122 (268)
+-|+|+||.||+=.+
T Consensus 9 i~i~G~sGsGKTTl~ 23 (174)
T 1np6_A 9 LAFAAWSGTGKTTLL 23 (174)
T ss_dssp EEEECCTTSCHHHHH
T ss_pred EEEEeCCCCCHHHHH
Confidence 458999999997543
No 63
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=31.58 E-value=12 Score=32.72 Aligned_cols=19 Identities=16% Similarity=0.293 Sum_probs=14.1
Q ss_pred eeeeeccCCCceeeceEee
Q psy3060 108 LRFVGRSGREAEASPKDWV 126 (268)
Q Consensus 108 LRFVGRSGRGKsFtlti~v 126 (268)
+=+||+||.|||=-+.+..
T Consensus 129 vaIvGpsGsGKSTLl~lL~ 147 (305)
T 2v9p_A 129 LAFIGPPNTGKSMLCNSLI 147 (305)
T ss_dssp EEEECSSSSSHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHh
Confidence 4579999999996555443
No 64
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=31.52 E-value=12 Score=31.14 Aligned_cols=16 Identities=19% Similarity=0.270 Sum_probs=12.1
Q ss_pred eeeeccCCCceeeceE
Q psy3060 109 RFVGRSGREAEASPKD 124 (268)
Q Consensus 109 RFVGRSGRGKsFtlti 124 (268)
=.+|.||.|||=-|.+
T Consensus 36 ~liG~nGsGKSTLlk~ 51 (262)
T 1b0u_A 36 SIIGSSGSGKSTFLRC 51 (262)
T ss_dssp EEECCTTSSHHHHHHH
T ss_pred EEECCCCCCHHHHHHH
Confidence 3689999999955544
No 65
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=31.37 E-value=12 Score=31.48 Aligned_cols=16 Identities=19% Similarity=0.227 Sum_probs=12.6
Q ss_pred eeeccCCCceeeceEe
Q psy3060 110 FVGRSGREAEASPKDW 125 (268)
Q Consensus 110 FVGRSGRGKsFtlti~ 125 (268)
.+|.||.|||=-|.+.
T Consensus 55 liG~NGsGKSTLlk~l 70 (263)
T 2olj_A 55 VIGPSGSGKSTFLRCL 70 (263)
T ss_dssp EECCTTSSHHHHHHHH
T ss_pred EEcCCCCcHHHHHHHH
Confidence 5899999999666544
No 66
>2cay_A VPS36 PH domain, vacuolar protein sorting protein 36; transport, ESCRT-II, lipid-binding, multivesicular bodies, membrane; 1.9A {Saccharomyces cerevisiae} SCOP: b.55.1.12
Probab=31.23 E-value=26 Score=28.07 Aligned_cols=44 Identities=16% Similarity=0.243 Sum_probs=31.8
Q ss_pred Ccccccceeee--eeeeeeeeeccc-cccCCcCCCCceeeeecCCCCc
Q psy3060 217 SIPISNVVHHT--VRLFGYHIHKTK-LLKSPFEKSEPVKLEFRDPGLK 261 (268)
Q Consensus 217 ~~~~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 261 (268)
++|++++..=. -..||..+ |.. .++.+.+.+..+||.||+.|-.
T Consensus 76 slPL~~v~~~e~~~~~fg~s~-Ki~l~~~p~~~~~~~~KLsFk~GGa~ 122 (145)
T 2cay_A 76 GLELDDLAYVNYSSGFLTRSP-RLILFFKDPSSSTEFVQLSFRKSDGV 122 (145)
T ss_dssp EEEGGGEEEEEEECSSSSSSC-EEEEEESSCSSTTCCEEEEESSSCCH
T ss_pred EeEhHheeeeeEEcCccccCc-eEEEEecCCCCCceEEEEEEcCCCch
Confidence 78999986533 34577764 555 4555578889999999998853
No 67
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=31.17 E-value=12 Score=25.84 Aligned_cols=12 Identities=25% Similarity=0.412 Sum_probs=10.4
Q ss_pred eeeeeccCCCce
Q psy3060 108 LRFVGRSGREAE 119 (268)
Q Consensus 108 LRFVGRSGRGKs 119 (268)
+=++|.+|.|||
T Consensus 7 i~v~G~~~~GKs 18 (168)
T 1u8z_A 7 VIMVGSGGVGKS 18 (168)
T ss_dssp EEEECSTTSSHH
T ss_pred EEEECCCCCCHH
Confidence 458999999997
No 68
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=31.15 E-value=12 Score=26.17 Aligned_cols=11 Identities=18% Similarity=0.193 Sum_probs=9.7
Q ss_pred eeeeccCCCce
Q psy3060 109 RFVGRSGREAE 119 (268)
Q Consensus 109 RFVGRSGRGKs 119 (268)
=++|.+|.|||
T Consensus 4 ~~~G~~~~GKs 14 (164)
T 1r8s_A 4 LMVGLDAAGKT 14 (164)
T ss_dssp EEECSTTSSHH
T ss_pred EEECCCCCCHH
Confidence 47999999997
No 69
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=31.06 E-value=13 Score=26.30 Aligned_cols=12 Identities=33% Similarity=0.421 Sum_probs=10.7
Q ss_pred eeeeeccCCCce
Q psy3060 108 LRFVGRSGREAE 119 (268)
Q Consensus 108 LRFVGRSGRGKs 119 (268)
+=++|.+|.|||
T Consensus 12 i~v~G~~~~GKs 23 (181)
T 2fn4_A 12 LVVVGGGGVGKS 23 (181)
T ss_dssp EEEEECTTSSHH
T ss_pred EEEECCCCCCHH
Confidence 568999999998
No 70
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=31.02 E-value=12 Score=27.45 Aligned_cols=16 Identities=25% Similarity=0.327 Sum_probs=12.7
Q ss_pred eeeeeccCCCceeece
Q psy3060 108 LRFVGRSGREAEASPK 123 (268)
Q Consensus 108 LRFVGRSGRGKsFtlt 123 (268)
+=++|-||.|||--..
T Consensus 11 i~l~G~~GsGKSTl~~ 26 (175)
T 1knq_A 11 YVLMGVSGSGKSAVAS 26 (175)
T ss_dssp EEEECSTTSCHHHHHH
T ss_pred EEEEcCCCCCHHHHHH
Confidence 5579999999996544
No 71
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=31.00 E-value=12 Score=27.94 Aligned_cols=66 Identities=11% Similarity=0.181 Sum_probs=30.8
Q ss_pred eeeeeEeeeccCCccccCCCCCC--cccccceeeeeeeeee---eeeccccccCCcCCC-CceeeeecCCCCc
Q psy3060 195 LCGLVLLTHFSSGARWDSASAPS--IPISNVVHHTVRLFGY---HIHKTKLLKSPFEKS-EPVKLEFRDPGLK 261 (268)
Q Consensus 195 ~c~lv~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 261 (268)
-|-+++++|.......+ ...|. -.+.+.....+.|-.. ....-.+.|+..-.. +.+.+++.+-|+.
T Consensus 146 ~~~vi~~~h~~~~~~~~-~~~p~~~~~~~~~~d~vi~l~~~~~~~~r~l~v~K~r~~~~~~~~~f~I~~~Gi~ 217 (220)
T 2cvh_A 146 NIPVIVINQVHFDSRTE-MTKPVAEQTLGYRCKDILRLDKLPKPGLRVAVLERHRFRPEGLMAYFRITERGIE 217 (220)
T ss_dssp TCCEEEEECSSSSCTTS-SCCSCCCHHHHHTSSEEEEEEECSSTTEEEEEEEECSSSCTTCEEEEEEETTEEE
T ss_pred CCEEEEEeeEEEcCCCC-ccccCCCcceeecCcEEEEEEEecCCCEEEEEEEeCCCCCCCceEEEEEeCCcee
Confidence 36688899987644311 11121 1344444444433221 011234456655443 2356666666653
No 72
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=30.76 E-value=13 Score=25.98 Aligned_cols=12 Identities=25% Similarity=0.399 Sum_probs=10.3
Q ss_pred eeeeeccCCCce
Q psy3060 108 LRFVGRSGREAE 119 (268)
Q Consensus 108 LRFVGRSGRGKs 119 (268)
+=++|.+|.|||
T Consensus 6 i~v~G~~~~GKs 17 (167)
T 1c1y_A 6 LVVLGSGGVGKS 17 (167)
T ss_dssp EEEECSTTSSHH
T ss_pred EEEECCCCCCHH
Confidence 458999999997
No 73
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=30.74 E-value=12 Score=30.42 Aligned_cols=18 Identities=11% Similarity=0.268 Sum_probs=13.4
Q ss_pred eeeeccCCCceeeceEee
Q psy3060 109 RFVGRSGREAEASPKDWV 126 (268)
Q Consensus 109 RFVGRSGRGKsFtlti~v 126 (268)
=.+|.||.|||=-|.+..
T Consensus 36 ~l~G~nGsGKSTLl~~l~ 53 (240)
T 1ji0_A 36 TLIGANGAGKTTTLSAIA 53 (240)
T ss_dssp EEECSTTSSHHHHHHHHT
T ss_pred EEECCCCCCHHHHHHHHh
Confidence 368999999996665443
No 74
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=30.73 E-value=13 Score=26.25 Aligned_cols=11 Identities=36% Similarity=0.501 Sum_probs=9.7
Q ss_pred eeeeccCCCce
Q psy3060 109 RFVGRSGREAE 119 (268)
Q Consensus 109 RFVGRSGRGKs 119 (268)
=++|.+|.|||
T Consensus 6 ~ivG~~~~GKS 16 (169)
T 3q85_A 6 MLVGESGVGKS 16 (169)
T ss_dssp EEECSTTSSHH
T ss_pred EEECCCCCCHH
Confidence 47999999996
No 75
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=30.65 E-value=13 Score=25.93 Aligned_cols=13 Identities=15% Similarity=0.322 Sum_probs=10.7
Q ss_pred eeeeeccCCCcee
Q psy3060 108 LRFVGRSGREAEA 120 (268)
Q Consensus 108 LRFVGRSGRGKsF 120 (268)
+=++|.+|.|||=
T Consensus 6 i~v~G~~~~GKss 18 (170)
T 1ek0_A 6 LVLLGEAAVGKSS 18 (170)
T ss_dssp EEEECSTTSSHHH
T ss_pred EEEECCCCCCHHH
Confidence 4579999999973
No 76
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=30.58 E-value=12 Score=30.71 Aligned_cols=17 Identities=12% Similarity=0.118 Sum_probs=12.9
Q ss_pred eeeeccCCCceeeceEe
Q psy3060 109 RFVGRSGREAEASPKDW 125 (268)
Q Consensus 109 RFVGRSGRGKsFtlti~ 125 (268)
=.+|.||.|||=-|.+.
T Consensus 37 ~liG~nGsGKSTLlk~l 53 (257)
T 1g6h_A 37 LIIGPNGSGKSTLINVI 53 (257)
T ss_dssp EEECSTTSSHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHH
Confidence 36899999999665543
No 77
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=30.18 E-value=15 Score=29.70 Aligned_cols=18 Identities=11% Similarity=-0.067 Sum_probs=14.4
Q ss_pred eeeeccCCCceeeceEee
Q psy3060 109 RFVGRSGREAEASPKDWV 126 (268)
Q Consensus 109 RFVGRSGRGKsFtlti~v 126 (268)
=.+|.||.|||--|.+..
T Consensus 26 ~liG~nGsGKSTLl~~l~ 43 (208)
T 3b85_A 26 FGLGPAGSGKTYLAMAKA 43 (208)
T ss_dssp EEECCTTSSTTHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHh
Confidence 468999999998776554
No 78
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=30.10 E-value=13 Score=30.88 Aligned_cols=17 Identities=12% Similarity=0.063 Sum_probs=12.9
Q ss_pred eeeeccCCCceeeceEe
Q psy3060 109 RFVGRSGREAEASPKDW 125 (268)
Q Consensus 109 RFVGRSGRGKsFtlti~ 125 (268)
=.+|.||.|||=-|.+.
T Consensus 37 ~liG~nGsGKSTLl~~i 53 (266)
T 2yz2_A 37 LVAGNTGSGKSTLLQIV 53 (266)
T ss_dssp EEECSTTSSHHHHHHHH
T ss_pred EEECCCCCcHHHHHHHH
Confidence 36899999999665543
No 79
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=30.06 E-value=7.9 Score=33.59 Aligned_cols=18 Identities=28% Similarity=0.302 Sum_probs=13.5
Q ss_pred eeeeeccCCCceeeceEe
Q psy3060 108 LRFVGRSGREAEASPKDW 125 (268)
Q Consensus 108 LRFVGRSGRGKsFtlti~ 125 (268)
+=+||+||.|||=-+.+.
T Consensus 83 vaivG~sGsGKSTLl~ll 100 (306)
T 3nh6_A 83 LALVGPSGAGKSTILRLL 100 (306)
T ss_dssp EEEESSSCHHHHHHHHHH
T ss_pred EEEECCCCchHHHHHHHH
Confidence 347999999999655443
No 80
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=29.91 E-value=13 Score=26.19 Aligned_cols=12 Identities=17% Similarity=0.379 Sum_probs=10.4
Q ss_pred eeeeeccCCCce
Q psy3060 108 LRFVGRSGREAE 119 (268)
Q Consensus 108 LRFVGRSGRGKs 119 (268)
+=++|.+|.|||
T Consensus 7 i~i~G~~~vGKS 18 (175)
T 2nzj_A 7 VVLLGDPGVGKT 18 (175)
T ss_dssp EEEECCTTSSHH
T ss_pred EEEECCCCccHH
Confidence 458999999997
No 81
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=29.89 E-value=14 Score=28.72 Aligned_cols=19 Identities=16% Similarity=0.179 Sum_probs=10.7
Q ss_pred eeeeeccCCCceeeceEee
Q psy3060 108 LRFVGRSGREAEASPKDWV 126 (268)
Q Consensus 108 LRFVGRSGRGKsFtlti~v 126 (268)
+=++|-||.|||=.+.+..
T Consensus 30 i~l~Gp~GsGKSTl~~~L~ 48 (231)
T 3lnc_A 30 LVLSSPSGCGKTTVANKLL 48 (231)
T ss_dssp EEEECSCC----CHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 3479999999997666544
No 82
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=29.61 E-value=14 Score=25.84 Aligned_cols=13 Identities=15% Similarity=0.322 Sum_probs=10.6
Q ss_pred eeeeeccCCCcee
Q psy3060 108 LRFVGRSGREAEA 120 (268)
Q Consensus 108 LRFVGRSGRGKsF 120 (268)
+=++|.+|.|||=
T Consensus 6 i~v~G~~~~GKss 18 (172)
T 2erx_A 6 VAVFGAGGVGKSS 18 (172)
T ss_dssp EEEECCTTSSHHH
T ss_pred EEEECCCCCCHHH
Confidence 3479999999983
No 83
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=29.35 E-value=13 Score=30.21 Aligned_cols=17 Identities=24% Similarity=0.245 Sum_probs=13.2
Q ss_pred eeeeccCCCceeeceEe
Q psy3060 109 RFVGRSGREAEASPKDW 125 (268)
Q Consensus 109 RFVGRSGRGKsFtlti~ 125 (268)
=.+|.||.|||=-|.+.
T Consensus 39 ~iiG~NGsGKSTLlk~l 55 (214)
T 1sgw_A 39 NFHGPNGIGKTTLLKTI 55 (214)
T ss_dssp EEECCTTSSHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHH
Confidence 36899999999666554
No 84
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=29.14 E-value=14 Score=30.76 Aligned_cols=20 Identities=10% Similarity=0.253 Sum_probs=15.5
Q ss_pred eeeeeccCCCceeeceEeee
Q psy3060 108 LRFVGRSGREAEASPKDWVG 127 (268)
Q Consensus 108 LRFVGRSGRGKsFtlti~v~ 127 (268)
+=++|.||.|||=.|.+..+
T Consensus 28 v~i~Gp~GsGKSTll~~l~g 47 (261)
T 2eyu_A 28 ILVTGPTGSGKSTTIASMID 47 (261)
T ss_dssp EEEECSTTCSHHHHHHHHHH
T ss_pred EEEECCCCccHHHHHHHHHH
Confidence 34799999999977766543
No 85
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=29.12 E-value=14 Score=28.29 Aligned_cols=17 Identities=18% Similarity=0.261 Sum_probs=12.8
Q ss_pred eeeeeccCCCceeeceE
Q psy3060 108 LRFVGRSGREAEASPKD 124 (268)
Q Consensus 108 LRFVGRSGRGKsFtlti 124 (268)
+=++|.||.|||=-+.+
T Consensus 32 i~l~G~~GsGKSTl~~~ 48 (200)
T 4eun_A 32 VVVMGVSGSGKTTIAHG 48 (200)
T ss_dssp EEEECCTTSCHHHHHHH
T ss_pred EEEECCCCCCHHHHHHH
Confidence 44789999999965443
No 86
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=28.97 E-value=14 Score=30.98 Aligned_cols=18 Identities=11% Similarity=0.174 Sum_probs=13.6
Q ss_pred eeeeccCCCceeeceEee
Q psy3060 109 RFVGRSGREAEASPKDWV 126 (268)
Q Consensus 109 RFVGRSGRGKsFtlti~v 126 (268)
-.+|.||.|||=-|.+..
T Consensus 41 ~liG~nGsGKSTLl~~l~ 58 (266)
T 4g1u_C 41 AIIGPNGAGKSTLLRLLT 58 (266)
T ss_dssp EEECCTTSCHHHHHHHHT
T ss_pred EEECCCCCcHHHHHHHHh
Confidence 468999999996665443
No 87
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=28.82 E-value=14 Score=30.58 Aligned_cols=17 Identities=12% Similarity=0.114 Sum_probs=13.0
Q ss_pred eeeeccCCCceeeceEe
Q psy3060 109 RFVGRSGREAEASPKDW 125 (268)
Q Consensus 109 RFVGRSGRGKsFtlti~ 125 (268)
-.+|.||.|||=-|.+.
T Consensus 35 ~l~G~nGsGKSTLl~~l 51 (253)
T 2nq2_C 35 AVLGQNGCGKSTLLDLL 51 (253)
T ss_dssp EEECCSSSSHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHH
Confidence 36899999999666544
No 88
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=28.80 E-value=14 Score=29.42 Aligned_cols=16 Identities=13% Similarity=0.111 Sum_probs=12.9
Q ss_pred eeeeccCCCceeeceE
Q psy3060 109 RFVGRSGREAEASPKD 124 (268)
Q Consensus 109 RFVGRSGRGKsFtlti 124 (268)
-++|.+|.|||=.+.+
T Consensus 5 ~i~G~nG~GKTTll~~ 20 (189)
T 2i3b_A 5 FLTGPPGVGKTTLIHK 20 (189)
T ss_dssp EEESCCSSCHHHHHHH
T ss_pred EEECCCCChHHHHHHH
Confidence 4799999999876554
No 89
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=28.76 E-value=14 Score=26.37 Aligned_cols=12 Identities=33% Similarity=0.434 Sum_probs=10.3
Q ss_pred eeeeeccCCCce
Q psy3060 108 LRFVGRSGREAE 119 (268)
Q Consensus 108 LRFVGRSGRGKs 119 (268)
+=++|.+|.|||
T Consensus 7 i~v~G~~~~GKS 18 (189)
T 4dsu_A 7 LVVVGADGVGKS 18 (189)
T ss_dssp EEEECCTTSSHH
T ss_pred EEEECCCCCCHH
Confidence 458999999996
No 90
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=28.69 E-value=16 Score=26.76 Aligned_cols=13 Identities=23% Similarity=0.373 Sum_probs=11.1
Q ss_pred ceeeeeccCCCce
Q psy3060 107 DLRFVGRSGREAE 119 (268)
Q Consensus 107 DLRFVGRSGRGKs 119 (268)
.+=++|.+|.|||
T Consensus 10 ki~v~G~~~~GKS 22 (207)
T 1vg8_A 10 KVIILGDSGVGKT 22 (207)
T ss_dssp EEEEECCTTSSHH
T ss_pred EEEEECcCCCCHH
Confidence 3668999999997
No 91
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=28.45 E-value=22 Score=25.06 Aligned_cols=21 Identities=29% Similarity=0.499 Sum_probs=12.6
Q ss_pred eccceeeecceeeeeccCCCce
Q psy3060 98 MKNQVAKFNDLRFVGRSGREAE 119 (268)
Q Consensus 98 MKNqVArFNDLRFVGRSGRGKs 119 (268)
|++...+|+ +=++|.+|.|||
T Consensus 8 ~~~~~~~~~-i~v~G~~~~GKs 28 (179)
T 2y8e_A 8 FGNPLRKFK-LVFLGEQSVGKT 28 (179)
T ss_dssp ----CEEEE-EEEEESTTSSHH
T ss_pred ccCCCcceE-EEEECCCCCCHH
Confidence 334333443 568999999996
No 92
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=28.36 E-value=14 Score=30.70 Aligned_cols=18 Identities=17% Similarity=0.355 Sum_probs=13.7
Q ss_pred eeeccCCCceeeceEeee
Q psy3060 110 FVGRSGREAEASPKDWVG 127 (268)
Q Consensus 110 FVGRSGRGKsFtlti~v~ 127 (268)
.+|.||.|||=-|.+..+
T Consensus 51 l~G~NGsGKSTLlk~l~G 68 (267)
T 2zu0_C 51 IMGPNGSGKSTLSATLAG 68 (267)
T ss_dssp EECCTTSSHHHHHHHHHT
T ss_pred EECCCCCCHHHHHHHHhC
Confidence 689999999966655443
No 93
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=28.29 E-value=16 Score=33.75 Aligned_cols=15 Identities=20% Similarity=0.250 Sum_probs=11.8
Q ss_pred eeeeeccCCCceeec
Q psy3060 108 LRFVGRSGREAEASP 122 (268)
Q Consensus 108 LRFVGRSGRGKsFtl 122 (268)
+=+||+||.|||=-|
T Consensus 45 vaLvG~nGaGKSTLl 59 (427)
T 2qag_B 45 ILCVGETGLGKSTLM 59 (427)
T ss_dssp EEEECSTTSSSHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 458999999998433
No 94
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=28.23 E-value=14 Score=31.05 Aligned_cols=40 Identities=18% Similarity=0.264 Sum_probs=24.2
Q ss_pred EEEEeecCCCccccccccceeeeccceeeecceeeeeccCCCceeeceE
Q psy3060 76 IVTIRAGNDENYCGELRNCTAVMKNQVAKFNDLRFVGRSGREAEASPKD 124 (268)
Q Consensus 76 ~Vtv~AGNDEN~~AELRN~tAvMKNqVArFNDLRFVGRSGRGKsFtlti 124 (268)
.+.++|-+.+| ..||++. +++++ +-++|.||.|||=.|.+
T Consensus 145 ~~~~SA~~g~g-i~~L~~~---l~G~i-----~~l~G~sG~GKSTLln~ 184 (302)
T 2yv5_A 145 VLKVSAKTGEG-IDELVDY---LEGFI-----CILAGPSGVGKSSILSR 184 (302)
T ss_dssp EEECCTTTCTT-HHHHHHH---TTTCE-----EEEECSTTSSHHHHHHH
T ss_pred EEEEECCCCCC-HHHHHhh---ccCcE-----EEEECCCCCCHHHHHHH
Confidence 45566666665 3455433 22322 45899999999855544
No 95
>3rl5_A Metallophosphoesterase mpped2; alpha-beta fold, metallophosphodiesterase, active site mutan nucleotide polymorphism, hydrolase; 1.26A {Rattus norvegicus} PDB: 3rl3_A* 3rl4_A*
Probab=28.16 E-value=74 Score=27.82 Aligned_cols=55 Identities=18% Similarity=0.272 Sum_probs=36.8
Q ss_pred CCCcceEEEEeeecCCC------------------eEEEEeecCCCcccc-----cc-----------------------
Q psy3060 58 TLPVAFKVVALGDVMDG------------------TIVTIRAGNDENYCG-----EL----------------------- 91 (268)
Q Consensus 58 tLP~aFkVvaLg~VpDG------------------T~Vtv~AGNDEN~~A-----EL----------------------- 91 (268)
.+|.+=-|+..||+-|. ..|.+-+||-|.+.. ++
T Consensus 76 ~i~~~D~vi~aGDl~~~g~~~e~~~~~~~L~~l~~~~v~~V~GNHD~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (296)
T 3rl5_A 76 QMPYGDILLHTGDFTELGLPSEVKKFNDWLGNLPYEYKIVIAGNHELTFDKEFMADLVKQDYYRFPSVSKLKPEDFDNVQ 155 (296)
T ss_dssp CCCSCSEEEECSCCSSSCCHHHHHHHHHHHHTSCCSEEEECCCTTCGGGCHHHHHHHTTSCGGGSHHHHTCCHHHHTTTG
T ss_pred ccCCCCEEEECCcccCCCCHHHHHHHHHHHHhCCCCeEEEEcCCcccccchhhhhhhhcccccccccccccccchhhhHh
Confidence 35666667778987653 347888999887532 11
Q ss_pred --ccceeeeccceeeecceeeee
Q psy3060 92 --RNCTAVMKNQVAKFNDLRFVG 112 (268)
Q Consensus 92 --RN~tAvMKNqVArFNDLRFVG 112 (268)
-...--+.+++..|+.|||.|
T Consensus 156 ~l~~~~~~L~~~~~~i~Gl~i~G 178 (296)
T 3rl5_A 156 SLLTNSIYLQDSEVTVKGFRIYG 178 (296)
T ss_dssp GGCTTSEECSSEEEEETTEEEEE
T ss_pred hhcCCeEEecCCcEEECCEEEEE
Confidence 112245678888899899888
No 96
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=27.95 E-value=15 Score=30.70 Aligned_cols=18 Identities=11% Similarity=0.211 Sum_probs=13.6
Q ss_pred eeeeccCCCceeeceEee
Q psy3060 109 RFVGRSGREAEASPKDWV 126 (268)
Q Consensus 109 RFVGRSGRGKsFtlti~v 126 (268)
=.+|.||.|||=-|.+..
T Consensus 45 ~l~G~NGsGKSTLlk~l~ 62 (256)
T 1vpl_A 45 GLIGPNGAGKTTTLRIIS 62 (256)
T ss_dssp EEECCTTSSHHHHHHHHT
T ss_pred EEECCCCCCHHHHHHHHh
Confidence 368999999996665543
No 97
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=27.84 E-value=15 Score=31.07 Aligned_cols=18 Identities=11% Similarity=-0.020 Sum_probs=13.6
Q ss_pred eeeeccCCCceeeceEee
Q psy3060 109 RFVGRSGREAEASPKDWV 126 (268)
Q Consensus 109 RFVGRSGRGKsFtlti~v 126 (268)
=.+|.||.|||=-|.+..
T Consensus 51 ~liG~NGsGKSTLlk~l~ 68 (279)
T 2ihy_A 51 ILYGLNGAGKTTLLNILN 68 (279)
T ss_dssp EEECCTTSSHHHHHHHHT
T ss_pred EEECCCCCcHHHHHHHHh
Confidence 368999999996665543
No 98
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=27.62 E-value=15 Score=29.62 Aligned_cols=13 Identities=38% Similarity=0.634 Sum_probs=10.8
Q ss_pred eeeeccCCCceee
Q psy3060 109 RFVGRSGREAEAS 121 (268)
Q Consensus 109 RFVGRSGRGKsFt 121 (268)
=+||++|.|||=.
T Consensus 25 ~lvG~~g~GKSSl 37 (247)
T 3lxw_A 25 ILVGRTGAGKSAT 37 (247)
T ss_dssp EEESSTTSSHHHH
T ss_pred EEECCCCCcHHHH
Confidence 4899999999843
No 99
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=27.60 E-value=15 Score=25.74 Aligned_cols=13 Identities=8% Similarity=0.176 Sum_probs=10.8
Q ss_pred eeeeeccCCCcee
Q psy3060 108 LRFVGRSGREAEA 120 (268)
Q Consensus 108 LRFVGRSGRGKsF 120 (268)
+=++|.+|.|||=
T Consensus 9 i~v~G~~~~GKss 21 (170)
T 1z08_A 9 VVLLGEGCVGKTS 21 (170)
T ss_dssp EEEECCTTSCHHH
T ss_pred EEEECcCCCCHHH
Confidence 4589999999973
No 100
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=27.60 E-value=31 Score=30.30 Aligned_cols=62 Identities=18% Similarity=0.132 Sum_probs=35.3
Q ss_pred eEEEEeeecCCCeEEEEeecCCCcccc-ccccceeeeccceeeec-ceeeeeccCCCceeeceEee
Q psy3060 63 FKVVALGDVMDGTIVTIRAGNDENYCG-ELRNCTAVMKNQVAKFN-DLRFVGRSGREAEASPKDWV 126 (268)
Q Consensus 63 FkVvaLg~VpDGT~Vtv~AGNDEN~~A-ELRN~tAvMKNqVArFN-DLRFVGRSGRGKsFtlti~v 126 (268)
|+|-++. ..+|..|+++--+++...- +|- ...++++-..+=. =+=++|.+|.|||=+|....
T Consensus 81 ~Rv~~~~-~~~g~~~~iR~~~~~~~~l~~lg-~~~~l~~l~~~~~g~i~I~GptGSGKTTlL~~l~ 144 (356)
T 3jvv_A 81 FRVNAFN-QNRGAGAVFRTIPSKVLTMEELG-MGEVFKRVSDVPRGLVLVTGPTGSGKSTTLAAML 144 (356)
T ss_dssp EEEEEEE-ETTEEEEEEEEECCSCCCTTTTT-CCHHHHHHHHCSSEEEEEECSTTSCHHHHHHHHH
T ss_pred EEEEEEe-eCCCcEEEEEECCCCCCCHHHcC-ChHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHH
Confidence 6766664 5678888888765543221 221 1112222111111 24589999999998887654
No 101
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=27.55 E-value=15 Score=27.86 Aligned_cols=69 Identities=12% Similarity=0.075 Sum_probs=31.4
Q ss_pred eeeeeEeeeccCCccc-----cCCCCCCc--ccccceeeeeeeeeee--eeccccccCCcCCCCceeeeecCCCCccC
Q psy3060 195 LCGLVLLTHFSSGARW-----DSASAPSI--PISNVVHHTVRLFGYH--IHKTKLLKSPFEKSEPVKLEFRDPGLKSY 263 (268)
Q Consensus 195 ~c~lv~~~~~~~~~~~-----~~~~~~~~--~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (268)
-|-+++++|....... .+...|+. -+++++++.+.|---. .-.-++.|+++.....+.+++.+-|+..+
T Consensus 164 ~~tvi~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~vi~l~~~~~~~r~l~v~K~r~~~~~~~~f~I~~~Gi~~~ 241 (243)
T 1n0w_A 164 GVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRKGRGETRICKIYDSPCLPEAEAMFAINADGVGDA 241 (243)
T ss_dssp CCEEEEEC-------------------------CCTTCEEEEEEECSTTEEEEEECCBTTBSCEEEEEEEETTEEECC
T ss_pred CCEEEEEeeeeecCCCccccCCCcccCCccChhhhcCcEEEEEEEcCCCeEEEEEEECCCCCCCeEEEEEeCCccccC
Confidence 4778889997654432 11112222 2666666666554210 11245677777654446777778787765
No 102
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=27.51 E-value=16 Score=25.48 Aligned_cols=12 Identities=25% Similarity=0.349 Sum_probs=10.5
Q ss_pred eeeeeccCCCce
Q psy3060 108 LRFVGRSGREAE 119 (268)
Q Consensus 108 LRFVGRSGRGKs 119 (268)
+=++|.+|.|||
T Consensus 9 i~v~G~~~~GKs 20 (170)
T 1r2q_A 9 LVLLGESAVGKS 20 (170)
T ss_dssp EEEECSTTSSHH
T ss_pred EEEECCCCCCHH
Confidence 458999999997
No 103
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=27.48 E-value=17 Score=33.40 Aligned_cols=17 Identities=24% Similarity=0.214 Sum_probs=12.8
Q ss_pred eeeeccCCCceeeceEe
Q psy3060 109 RFVGRSGREAEASPKDW 125 (268)
Q Consensus 109 RFVGRSGRGKsFtlti~ 125 (268)
=.||+||.|||=-+.+.
T Consensus 374 ~ivG~sGsGKSTLl~~l 390 (595)
T 2yl4_A 374 ALVGPSGSGKSTVLSLL 390 (595)
T ss_dssp EEECCTTSSSTHHHHHH
T ss_pred EEECCCCCCHHHHHHHH
Confidence 47999999999555443
No 104
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=27.40 E-value=15 Score=28.49 Aligned_cols=18 Identities=17% Similarity=0.174 Sum_probs=13.1
Q ss_pred eeeeeccCCCceeeceEe
Q psy3060 108 LRFVGRSGREAEASPKDW 125 (268)
Q Consensus 108 LRFVGRSGRGKsFtlti~ 125 (268)
+=++|-||.|||=.+..-
T Consensus 11 i~l~GpsGsGKsTl~~~L 28 (208)
T 3tau_A 11 IVLSGPSGVGKGTVREAV 28 (208)
T ss_dssp EEEECCTTSCHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHH
Confidence 447899999998554433
No 105
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=27.35 E-value=15 Score=30.47 Aligned_cols=17 Identities=18% Similarity=0.239 Sum_probs=13.0
Q ss_pred eeeeccCCCceeeceEe
Q psy3060 109 RFVGRSGREAEASPKDW 125 (268)
Q Consensus 109 RFVGRSGRGKsFtlti~ 125 (268)
=.+|.||.|||=-|.+.
T Consensus 30 ~liG~NGsGKSTLlk~l 46 (249)
T 2qi9_C 30 HLVGPNGAGKSTLLARM 46 (249)
T ss_dssp EEECCTTSSHHHHHHHH
T ss_pred EEECCCCCcHHHHHHHH
Confidence 36899999999665544
No 106
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=27.29 E-value=16 Score=25.46 Aligned_cols=12 Identities=25% Similarity=0.495 Sum_probs=10.3
Q ss_pred eeeeeccCCCce
Q psy3060 108 LRFVGRSGREAE 119 (268)
Q Consensus 108 LRFVGRSGRGKs 119 (268)
+=++|.+|.|||
T Consensus 6 i~v~G~~~~GKs 17 (170)
T 1g16_A 6 ILLIGDSGVGKS 17 (170)
T ss_dssp EEEEESTTSSHH
T ss_pred EEEECcCCCCHH
Confidence 457999999997
No 107
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=27.20 E-value=15 Score=28.08 Aligned_cols=13 Identities=31% Similarity=0.340 Sum_probs=11.0
Q ss_pred eeeeeccCCCcee
Q psy3060 108 LRFVGRSGREAEA 120 (268)
Q Consensus 108 LRFVGRSGRGKsF 120 (268)
+=++|-||.|||=
T Consensus 15 i~l~G~sGsGKsT 27 (204)
T 2qor_A 15 LVVCGPSGVGKGT 27 (204)
T ss_dssp EEEECCTTSCHHH
T ss_pred EEEECCCCCCHHH
Confidence 4578999999984
No 108
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=26.53 E-value=17 Score=25.58 Aligned_cols=12 Identities=17% Similarity=0.362 Sum_probs=10.6
Q ss_pred eeeeeccCCCce
Q psy3060 108 LRFVGRSGREAE 119 (268)
Q Consensus 108 LRFVGRSGRGKs 119 (268)
+=++|.+|.|||
T Consensus 10 i~v~G~~~~GKs 21 (171)
T 1upt_A 10 ILILGLDGAGKT 21 (171)
T ss_dssp EEEECSTTSSHH
T ss_pred EEEECCCCCCHH
Confidence 558999999997
No 109
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=26.52 E-value=17 Score=26.48 Aligned_cols=12 Identities=33% Similarity=0.432 Sum_probs=10.7
Q ss_pred eeeeeccCCCce
Q psy3060 108 LRFVGRSGREAE 119 (268)
Q Consensus 108 LRFVGRSGRGKs 119 (268)
+=++|.+|.|||
T Consensus 24 i~vvG~~~~GKS 35 (190)
T 3con_A 24 LVVVGAGGVGKS 35 (190)
T ss_dssp EEEECSTTSSHH
T ss_pred EEEECcCCCCHH
Confidence 568999999997
No 110
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=26.44 E-value=17 Score=29.40 Aligned_cols=14 Identities=14% Similarity=0.105 Sum_probs=11.2
Q ss_pred eeeccCCCceeece
Q psy3060 110 FVGRSGREAEASPK 123 (268)
Q Consensus 110 FVGRSGRGKsFtlt 123 (268)
++|++|.|||--+.
T Consensus 40 i~G~~G~GKTTl~~ 53 (296)
T 1cr0_A 40 VTSGSGMGKSTFVR 53 (296)
T ss_dssp EEESTTSSHHHHHH
T ss_pred EEeCCCCCHHHHHH
Confidence 57999999986544
No 111
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=26.43 E-value=16 Score=28.77 Aligned_cols=18 Identities=11% Similarity=0.113 Sum_probs=13.8
Q ss_pred eeeeeccCCCceeeceEe
Q psy3060 108 LRFVGRSGREAEASPKDW 125 (268)
Q Consensus 108 LRFVGRSGRGKsFtlti~ 125 (268)
+=++|.+|.|||=-+.+.
T Consensus 30 i~l~G~~GsGKSTl~k~L 47 (246)
T 2bbw_A 30 AVILGPPGSGKGTVCQRI 47 (246)
T ss_dssp EEEECCTTSSHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHH
Confidence 558899999999655543
No 112
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=26.33 E-value=17 Score=25.88 Aligned_cols=12 Identities=33% Similarity=0.482 Sum_probs=10.5
Q ss_pred eeeeeccCCCce
Q psy3060 108 LRFVGRSGREAE 119 (268)
Q Consensus 108 LRFVGRSGRGKs 119 (268)
+=++|.+|.|||
T Consensus 13 i~v~G~~~~GKs 24 (180)
T 2g6b_A 13 VMLVGDSGVGKT 24 (180)
T ss_dssp EEEECSTTSSHH
T ss_pred EEEECcCCCCHH
Confidence 458999999997
No 113
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=26.31 E-value=17 Score=25.81 Aligned_cols=12 Identities=17% Similarity=0.376 Sum_probs=10.7
Q ss_pred eeeeeccCCCce
Q psy3060 108 LRFVGRSGREAE 119 (268)
Q Consensus 108 LRFVGRSGRGKs 119 (268)
+=++|.+|.|||
T Consensus 10 i~v~G~~~~GKS 21 (177)
T 1wms_A 10 VILLGDGGVGKS 21 (177)
T ss_dssp EEEECCTTSSHH
T ss_pred EEEECCCCCCHH
Confidence 568999999997
No 114
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=26.18 E-value=21 Score=25.19 Aligned_cols=12 Identities=33% Similarity=0.501 Sum_probs=10.4
Q ss_pred eeeeeccCCCce
Q psy3060 108 LRFVGRSGREAE 119 (268)
Q Consensus 108 LRFVGRSGRGKs 119 (268)
+=++|.+|.|||
T Consensus 12 i~v~G~~~~GKs 23 (181)
T 3tw8_B 12 LLIIGDSGVGKS 23 (181)
T ss_dssp EEEECCTTSCHH
T ss_pred EEEECCCCCCHH
Confidence 558999999996
No 115
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=25.79 E-value=18 Score=27.29 Aligned_cols=13 Identities=15% Similarity=0.353 Sum_probs=11.2
Q ss_pred ceeeeeccCCCce
Q psy3060 107 DLRFVGRSGREAE 119 (268)
Q Consensus 107 DLRFVGRSGRGKs 119 (268)
-+=++|++|.|||
T Consensus 32 ~i~i~G~~g~GKT 44 (221)
T 2wsm_A 32 AVNIMGAIGSGKT 44 (221)
T ss_dssp EEEEEECTTSCHH
T ss_pred EEEEEcCCCCCHH
Confidence 3568999999998
No 116
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=25.79 E-value=17 Score=29.80 Aligned_cols=16 Identities=25% Similarity=0.341 Sum_probs=12.2
Q ss_pred eeeeeccCCCceeece
Q psy3060 108 LRFVGRSGREAEASPK 123 (268)
Q Consensus 108 LRFVGRSGRGKsFtlt 123 (268)
+=++|.||.||+=-+.
T Consensus 22 ivl~GPSGaGKsTL~~ 37 (197)
T 3ney_A 22 LVLIGASGVGRSHIKN 37 (197)
T ss_dssp EEEECCTTSSHHHHHH
T ss_pred EEEECcCCCCHHHHHH
Confidence 4579999999985443
No 117
>4f9l_D 20.1 anti-BTN3A1 antibody fragment; B7 superfamily, butyrophilin, CD277, immune system; HET: NAG; 3.14A {Mus musculus}
Probab=25.74 E-value=19 Score=31.92 Aligned_cols=16 Identities=31% Similarity=0.326 Sum_probs=13.5
Q ss_pred eeeeccCCCceeeceEe
Q psy3060 109 RFVGRSGREAEASPKDW 125 (268)
Q Consensus 109 RFVGRSGRGKsFtlti~ 125 (268)
||-| ||.|..|+|+|.
T Consensus 61 RFSg-S~Sgt~ftLtIs 76 (259)
T 4f9l_D 61 RFSG-SGSATGFTLTIS 76 (259)
T ss_dssp TEEE-EEETTEEEEEEE
T ss_pred CEEe-eccCCeEEEEEc
Confidence 6665 788999999998
No 118
>4f9p_D 103.2 anti-BTN3A1 antibody fragment; B7 superfamily, butyrophilin, CD277, immune system; 3.52A {Mus musculus}
Probab=25.64 E-value=25 Score=31.21 Aligned_cols=16 Identities=38% Similarity=0.395 Sum_probs=13.8
Q ss_pred eeeeccCCCceeeceEe
Q psy3060 109 RFVGRSGREAEASPKDW 125 (268)
Q Consensus 109 RFVGRSGRGKsFtlti~ 125 (268)
||-| ||.|..|+|+|.
T Consensus 197 RFSg-S~sgt~ftLtIs 212 (254)
T 4f9p_D 197 RFSG-SGSGTEFTLSIN 212 (254)
T ss_dssp TCEE-ECCTTEEEEEEE
T ss_pred CEEe-eeeCCEEEEEEC
Confidence 6766 889999999997
No 119
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=25.59 E-value=18 Score=25.81 Aligned_cols=12 Identities=17% Similarity=0.111 Sum_probs=10.6
Q ss_pred eeeeeccCCCce
Q psy3060 108 LRFVGRSGREAE 119 (268)
Q Consensus 108 LRFVGRSGRGKs 119 (268)
+=++|.+|.|||
T Consensus 8 i~~~G~~~~GKs 19 (186)
T 1mh1_A 8 CVVVGDGAVGKT 19 (186)
T ss_dssp EEEECSTTSSHH
T ss_pred EEEECCCCCCHH
Confidence 458999999998
No 120
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=25.41 E-value=18 Score=26.62 Aligned_cols=12 Identities=8% Similarity=0.218 Sum_probs=10.8
Q ss_pred eeeeeccCCCce
Q psy3060 108 LRFVGRSGREAE 119 (268)
Q Consensus 108 LRFVGRSGRGKs 119 (268)
+=++|.+|.|||
T Consensus 19 i~ivG~~~vGKS 30 (181)
T 1fzq_A 19 ILLLGLDNAGKT 30 (181)
T ss_dssp EEEEESTTSSHH
T ss_pred EEEECCCCCCHH
Confidence 568999999998
No 121
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=25.38 E-value=19 Score=25.88 Aligned_cols=12 Identities=8% Similarity=0.196 Sum_probs=10.3
Q ss_pred eeeeeccCCCce
Q psy3060 108 LRFVGRSGREAE 119 (268)
Q Consensus 108 LRFVGRSGRGKs 119 (268)
+=++|.+|.|||
T Consensus 9 i~~~G~~~~GKS 20 (181)
T 3t5g_A 9 IAILGYRSVGKS 20 (181)
T ss_dssp EEEEESTTSSHH
T ss_pred EEEECcCCCCHH
Confidence 448999999997
No 122
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=25.37 E-value=19 Score=33.19 Aligned_cols=17 Identities=18% Similarity=0.251 Sum_probs=12.7
Q ss_pred eeeeeccCCCceeeceE
Q psy3060 108 LRFVGRSGREAEASPKD 124 (268)
Q Consensus 108 LRFVGRSGRGKsFtlti 124 (268)
+-.||+||.|||=-+.+
T Consensus 384 ~~ivG~sGsGKSTll~~ 400 (598)
T 3qf4_B 384 VALVGPTGSGKTTIVNL 400 (598)
T ss_dssp EEEECCTTSSTTHHHHH
T ss_pred EEEECCCCCcHHHHHHH
Confidence 45799999999954433
No 123
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=25.34 E-value=18 Score=26.08 Aligned_cols=12 Identities=17% Similarity=0.266 Sum_probs=10.4
Q ss_pred eeeeccCCCcee
Q psy3060 109 RFVGRSGREAEA 120 (268)
Q Consensus 109 RFVGRSGRGKsF 120 (268)
=++|-+|+|||-
T Consensus 6 ~i~G~~GsGKST 17 (181)
T 1ly1_A 6 LTIGCPGSGKST 17 (181)
T ss_dssp EEECCTTSSHHH
T ss_pred EEecCCCCCHHH
Confidence 478999999985
No 124
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=25.29 E-value=18 Score=25.67 Aligned_cols=12 Identities=8% Similarity=0.235 Sum_probs=10.5
Q ss_pred eeeeeccCCCce
Q psy3060 108 LRFVGRSGREAE 119 (268)
Q Consensus 108 LRFVGRSGRGKs 119 (268)
+=++|.+|.|||
T Consensus 9 i~v~G~~~~GKs 20 (178)
T 2hxs_A 9 IVVLGDGASGKT 20 (178)
T ss_dssp EEEECCTTSSHH
T ss_pred EEEECcCCCCHH
Confidence 458999999997
No 125
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=25.27 E-value=18 Score=30.50 Aligned_cols=11 Identities=36% Similarity=0.438 Sum_probs=10.2
Q ss_pred eeeeccCCCce
Q psy3060 109 RFVGRSGREAE 119 (268)
Q Consensus 109 RFVGRSGRGKs 119 (268)
=+||+||.|||
T Consensus 22 ~lvG~nG~GKS 32 (301)
T 2qnr_A 22 MVVGESGLGKS 32 (301)
T ss_dssp EEEEETTSSHH
T ss_pred EEECCCCCCHH
Confidence 57999999999
No 126
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=25.22 E-value=18 Score=31.05 Aligned_cols=18 Identities=17% Similarity=0.202 Sum_probs=13.8
Q ss_pred eeeeeccCCCceeeceEe
Q psy3060 108 LRFVGRSGREAEASPKDW 125 (268)
Q Consensus 108 LRFVGRSGRGKsFtlti~ 125 (268)
+=+||.||.|||=++.+.
T Consensus 105 i~lvG~nGsGKTTll~~L 122 (304)
T 1rj9_A 105 VLVVGVNGVGKTTTIAKL 122 (304)
T ss_dssp EEEECSTTSSHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHH
Confidence 348999999999766543
No 127
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=25.20 E-value=18 Score=33.12 Aligned_cols=18 Identities=28% Similarity=0.351 Sum_probs=13.3
Q ss_pred eeeeeccCCCceeeceEe
Q psy3060 108 LRFVGRSGREAEASPKDW 125 (268)
Q Consensus 108 LRFVGRSGRGKsFtlti~ 125 (268)
+=.||+||.|||=-+.+.
T Consensus 372 ~~ivG~sGsGKSTLl~~l 389 (582)
T 3b60_A 372 VALVGRSGSGKSTIASLI 389 (582)
T ss_dssp EEEEECTTSSHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHH
Confidence 457999999999555443
No 128
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=25.16 E-value=18 Score=25.38 Aligned_cols=12 Identities=17% Similarity=0.266 Sum_probs=10.1
Q ss_pred eeeeccCCCcee
Q psy3060 109 RFVGRSGREAEA 120 (268)
Q Consensus 109 RFVGRSGRGKsF 120 (268)
=++|-+|.|||-
T Consensus 5 ~l~G~~GsGKsT 16 (179)
T 3lw7_A 5 LITGMPGSGKSE 16 (179)
T ss_dssp EEECCTTSCHHH
T ss_pred EEECCCCCCHHH
Confidence 368999999985
No 129
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=25.12 E-value=19 Score=27.74 Aligned_cols=18 Identities=17% Similarity=0.095 Sum_probs=13.6
Q ss_pred eeeeeccCCCceeeceEe
Q psy3060 108 LRFVGRSGREAEASPKDW 125 (268)
Q Consensus 108 LRFVGRSGRGKsFtlti~ 125 (268)
+-++|.||.|||-.+...
T Consensus 25 i~i~G~~GsGKstl~~~l 42 (201)
T 1rz3_A 25 LGIDGLSRSGKTTLANQL 42 (201)
T ss_dssp EEEEECTTSSHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHH
Confidence 457899999999765443
No 130
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=25.10 E-value=18 Score=30.81 Aligned_cols=18 Identities=11% Similarity=0.082 Sum_probs=13.7
Q ss_pred eeeeccCCCceeeceEee
Q psy3060 109 RFVGRSGREAEASPKDWV 126 (268)
Q Consensus 109 RFVGRSGRGKsFtlti~v 126 (268)
=.+|.||.|||=-|.+..
T Consensus 68 ~i~G~NGsGKSTLlk~l~ 85 (290)
T 2bbs_A 68 AVAGSTGAGKTSLLMMIM 85 (290)
T ss_dssp EEEESTTSSHHHHHHHHT
T ss_pred EEECCCCCcHHHHHHHHh
Confidence 468999999996665543
No 131
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=25.02 E-value=23 Score=25.09 Aligned_cols=12 Identities=25% Similarity=0.412 Sum_probs=10.7
Q ss_pred eeeeeccCCCce
Q psy3060 108 LRFVGRSGREAE 119 (268)
Q Consensus 108 LRFVGRSGRGKs 119 (268)
+=++|.+|.|||
T Consensus 21 i~v~G~~~~GKS 32 (187)
T 2a9k_A 21 VIMVGSGGVGKS 32 (187)
T ss_dssp EEEECSTTSSHH
T ss_pred EEEECCCCCCHH
Confidence 568999999997
No 132
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=24.98 E-value=18 Score=25.66 Aligned_cols=13 Identities=15% Similarity=0.212 Sum_probs=11.0
Q ss_pred eeeeeccCCCcee
Q psy3060 108 LRFVGRSGREAEA 120 (268)
Q Consensus 108 LRFVGRSGRGKsF 120 (268)
+=++|.+|.|||=
T Consensus 10 i~v~G~~~~GKSs 22 (208)
T 3clv_A 10 TVLLGESSVGKSS 22 (208)
T ss_dssp EEEECCTTSSHHH
T ss_pred EEEECCCCCCHHH
Confidence 5589999999983
No 133
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=24.97 E-value=19 Score=26.11 Aligned_cols=12 Identities=25% Similarity=0.423 Sum_probs=10.6
Q ss_pred eeeeeccCCCce
Q psy3060 108 LRFVGRSGREAE 119 (268)
Q Consensus 108 LRFVGRSGRGKs 119 (268)
+=++|.+|.|||
T Consensus 26 i~v~G~~~~GKS 37 (195)
T 1svi_A 26 IALAGRSNVGKS 37 (195)
T ss_dssp EEEEEBTTSSHH
T ss_pred EEEECCCCCCHH
Confidence 558999999997
No 134
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=24.95 E-value=18 Score=30.37 Aligned_cols=18 Identities=11% Similarity=0.148 Sum_probs=13.7
Q ss_pred eeeeccCCCceeeceEee
Q psy3060 109 RFVGRSGREAEASPKDWV 126 (268)
Q Consensus 109 RFVGRSGRGKsFtlti~v 126 (268)
=.+|.||.|||=-|.+..
T Consensus 34 ~i~G~NGsGKSTLlk~l~ 51 (263)
T 2pjz_A 34 IILGPNGSGKTTLLRAIS 51 (263)
T ss_dssp EEECCTTSSHHHHHHHHT
T ss_pred EEECCCCCCHHHHHHHHh
Confidence 468999999996665543
No 135
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=24.92 E-value=19 Score=25.19 Aligned_cols=12 Identities=17% Similarity=0.412 Sum_probs=10.5
Q ss_pred eeeeeccCCCce
Q psy3060 108 LRFVGRSGREAE 119 (268)
Q Consensus 108 LRFVGRSGRGKs 119 (268)
+=++|.+|.|||
T Consensus 9 i~v~G~~~~GKS 20 (170)
T 1z0j_A 9 VCLLGDTGVGKS 20 (170)
T ss_dssp EEEECCTTSSHH
T ss_pred EEEECcCCCCHH
Confidence 558999999997
No 136
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=24.90 E-value=19 Score=25.69 Aligned_cols=12 Identities=25% Similarity=0.310 Sum_probs=10.6
Q ss_pred eeeeeccCCCce
Q psy3060 108 LRFVGRSGREAE 119 (268)
Q Consensus 108 LRFVGRSGRGKs 119 (268)
+=++|.+|.|||
T Consensus 14 i~v~G~~~~GKS 25 (195)
T 3bc1_A 14 FLALGDSGVGKT 25 (195)
T ss_dssp EEEECSTTSSHH
T ss_pred EEEECCCCCCHH
Confidence 458999999998
No 137
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=24.86 E-value=18 Score=27.23 Aligned_cols=12 Identities=25% Similarity=0.396 Sum_probs=10.9
Q ss_pred eeeeeccCCCce
Q psy3060 108 LRFVGRSGREAE 119 (268)
Q Consensus 108 LRFVGRSGRGKs 119 (268)
+=++|++|.|||
T Consensus 28 i~lvG~~~vGKS 39 (198)
T 1f6b_A 28 LVFLGLDNAGKT 39 (198)
T ss_dssp EEEEEETTSSHH
T ss_pred EEEECCCCCCHH
Confidence 569999999998
No 138
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=24.81 E-value=22 Score=25.14 Aligned_cols=13 Identities=23% Similarity=0.388 Sum_probs=11.1
Q ss_pred eeeeeccCCCcee
Q psy3060 108 LRFVGRSGREAEA 120 (268)
Q Consensus 108 LRFVGRSGRGKsF 120 (268)
+=++|.+|.|||=
T Consensus 11 i~v~G~~~~GKSs 23 (182)
T 1ky3_A 11 VIILGDSGVGKTS 23 (182)
T ss_dssp EEEECCTTSSHHH
T ss_pred EEEECCCCCCHHH
Confidence 6689999999983
No 139
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=24.80 E-value=19 Score=26.33 Aligned_cols=13 Identities=15% Similarity=0.189 Sum_probs=10.5
Q ss_pred eeeeeccCCCcee
Q psy3060 108 LRFVGRSGREAEA 120 (268)
Q Consensus 108 LRFVGRSGRGKsF 120 (268)
+=++|-||.|||-
T Consensus 6 i~l~G~~GsGKST 18 (178)
T 1qhx_A 6 IILNGGSSAGKSG 18 (178)
T ss_dssp EEEECCTTSSHHH
T ss_pred EEEECCCCCCHHH
Confidence 3478999999984
No 140
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=24.75 E-value=19 Score=27.31 Aligned_cols=14 Identities=7% Similarity=0.069 Sum_probs=11.0
Q ss_pred eeeeccCCCceeec
Q psy3060 109 RFVGRSGREAEASP 122 (268)
Q Consensus 109 RFVGRSGRGKsFtl 122 (268)
=.+|.||.|||--.
T Consensus 25 ~i~G~~GsGKSTl~ 38 (207)
T 2qt1_A 25 GISGVTNSGKTTLA 38 (207)
T ss_dssp EEEESTTSSHHHHH
T ss_pred EEECCCCCCHHHHH
Confidence 46899999999543
No 141
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=24.52 E-value=20 Score=27.00 Aligned_cols=16 Identities=13% Similarity=0.287 Sum_probs=12.1
Q ss_pred eeeeeccCCCceeece
Q psy3060 108 LRFVGRSGREAEASPK 123 (268)
Q Consensus 108 LRFVGRSGRGKsFtlt 123 (268)
+-++|.+|.|||--..
T Consensus 4 i~i~G~~GsGKSTl~~ 19 (204)
T 2if2_A 4 IGLTGNIGCGKSTVAQ 19 (204)
T ss_dssp EEEEECTTSSHHHHHH
T ss_pred EEEECCCCcCHHHHHH
Confidence 3468999999995443
No 142
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=24.48 E-value=30 Score=24.87 Aligned_cols=22 Identities=23% Similarity=0.330 Sum_probs=14.1
Q ss_pred eccceeeecceeeeeccCCCce
Q psy3060 98 MKNQVAKFNDLRFVGRSGREAE 119 (268)
Q Consensus 98 MKNqVArFNDLRFVGRSGRGKs 119 (268)
|.++.-+-=-+=++|.+|.|||
T Consensus 8 ~~~~~~~~~~i~v~G~~~~GKs 29 (195)
T 1x3s_A 8 MDEDVLTTLKILIIGESGVGKS 29 (195)
T ss_dssp -CTTEEEEEEEEEECSTTSSHH
T ss_pred cccCCCCceEEEEECCCCCCHH
Confidence 4444333223668999999997
No 143
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=24.45 E-value=18 Score=32.70 Aligned_cols=14 Identities=29% Similarity=0.247 Sum_probs=11.6
Q ss_pred eeeeccCCCceeec
Q psy3060 109 RFVGRSGREAEASP 122 (268)
Q Consensus 109 RFVGRSGRGKsFtl 122 (268)
=+||+||.|||=-|
T Consensus 35 ~lvG~sGaGKSTLl 48 (418)
T 2qag_C 35 MVVGESGLGKSTLI 48 (418)
T ss_dssp EEECCTTSSHHHHH
T ss_pred EEECCCCCcHHHHH
Confidence 68999999998443
No 144
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=24.23 E-value=19 Score=26.82 Aligned_cols=12 Identities=17% Similarity=0.257 Sum_probs=10.6
Q ss_pred eeeeeccCCCce
Q psy3060 108 LRFVGRSGREAE 119 (268)
Q Consensus 108 LRFVGRSGRGKs 119 (268)
+=++|.+|.|||
T Consensus 23 i~ivG~~~vGKS 34 (184)
T 3ihw_A 23 VGIVGNLSSGKS 34 (184)
T ss_dssp EEEECCTTSCHH
T ss_pred EEEECCCCCCHH
Confidence 458999999997
No 145
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=24.06 E-value=15 Score=31.19 Aligned_cols=20 Identities=5% Similarity=0.101 Sum_probs=14.9
Q ss_pred ceeeeeccCCCceeeceEee
Q psy3060 107 DLRFVGRSGREAEASPKDWV 126 (268)
Q Consensus 107 DLRFVGRSGRGKsFtlti~v 126 (268)
=+-++|.||.|||=-+.+..
T Consensus 172 k~~IvG~nGsGKSTLlk~L~ 191 (365)
T 1lw7_A 172 TVAILGGESSGKSVLVNKLA 191 (365)
T ss_dssp EEEEECCTTSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 35689999999996655443
No 146
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=23.99 E-value=19 Score=26.29 Aligned_cols=12 Identities=25% Similarity=0.484 Sum_probs=10.8
Q ss_pred eeeeeccCCCce
Q psy3060 108 LRFVGRSGREAE 119 (268)
Q Consensus 108 LRFVGRSGRGKs 119 (268)
+=++|.+|.|||
T Consensus 28 i~v~G~~~~GKS 39 (193)
T 2oil_A 28 VVLIGESGVGKT 39 (193)
T ss_dssp EEEESSTTSSHH
T ss_pred EEEECcCCCCHH
Confidence 568999999997
No 147
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=23.98 E-value=19 Score=31.56 Aligned_cols=13 Identities=23% Similarity=0.394 Sum_probs=10.8
Q ss_pred eeeeeccCCCcee
Q psy3060 108 LRFVGRSGREAEA 120 (268)
Q Consensus 108 LRFVGRSGRGKsF 120 (268)
+=+||+||.|||=
T Consensus 183 vaivG~~gvGKST 195 (439)
T 1mky_A 183 VAIVGRPNVGKST 195 (439)
T ss_dssp EEEECSTTSSHHH
T ss_pred EEEECCCCCCHHH
Confidence 3489999999984
No 148
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=23.90 E-value=20 Score=26.46 Aligned_cols=13 Identities=15% Similarity=0.383 Sum_probs=10.8
Q ss_pred eeeeeccCCCcee
Q psy3060 108 LRFVGRSGREAEA 120 (268)
Q Consensus 108 LRFVGRSGRGKsF 120 (268)
+=++|-+|.|||-
T Consensus 8 i~l~G~~GsGKst 20 (185)
T 3trf_A 8 IYLIGLMGAGKTS 20 (185)
T ss_dssp EEEECSTTSSHHH
T ss_pred EEEECCCCCCHHH
Confidence 3478999999984
No 149
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=23.87 E-value=21 Score=25.60 Aligned_cols=12 Identities=33% Similarity=0.451 Sum_probs=10.2
Q ss_pred eeeeccCCCcee
Q psy3060 109 RFVGRSGREAEA 120 (268)
Q Consensus 109 RFVGRSGRGKsF 120 (268)
=++|.+|.|||=
T Consensus 5 ~v~G~~~~GKSs 16 (190)
T 2cxx_A 5 IFAGRSNVGKST 16 (190)
T ss_dssp EEEEBTTSSHHH
T ss_pred EEECCCCCCHHH
Confidence 479999999983
No 150
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=23.76 E-value=20 Score=25.57 Aligned_cols=13 Identities=8% Similarity=-0.120 Sum_probs=10.5
Q ss_pred eeeeccCCCceee
Q psy3060 109 RFVGRSGREAEAS 121 (268)
Q Consensus 109 RFVGRSGRGKsFt 121 (268)
=+.|-||.|||--
T Consensus 5 ~l~G~~GsGKsT~ 17 (173)
T 3kb2_A 5 ILEGPDCCFKSTV 17 (173)
T ss_dssp EEECSSSSSHHHH
T ss_pred EEECCCCCCHHHH
Confidence 3689999999853
No 151
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=23.72 E-value=20 Score=27.06 Aligned_cols=12 Identities=33% Similarity=0.509 Sum_probs=10.6
Q ss_pred eeeeeccCCCce
Q psy3060 108 LRFVGRSGREAE 119 (268)
Q Consensus 108 LRFVGRSGRGKs 119 (268)
+=+||.+|.|||
T Consensus 26 i~vvG~~~vGKS 37 (195)
T 3cbq_A 26 VMLVGESGVGKS 37 (195)
T ss_dssp EEEECSTTSSHH
T ss_pred EEEECCCCCCHH
Confidence 568999999996
No 152
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=23.69 E-value=20 Score=24.86 Aligned_cols=13 Identities=23% Similarity=0.371 Sum_probs=10.6
Q ss_pred eeeeeccCCCcee
Q psy3060 108 LRFVGRSGREAEA 120 (268)
Q Consensus 108 LRFVGRSGRGKsF 120 (268)
+=++|.+|.|||=
T Consensus 4 i~v~G~~~~GKSs 16 (161)
T 2dyk_A 4 VVIVGRPNVGKSS 16 (161)
T ss_dssp EEEECCTTSSHHH
T ss_pred EEEECCCCCCHHH
Confidence 3479999999983
No 153
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=23.57 E-value=20 Score=25.20 Aligned_cols=12 Identities=17% Similarity=0.285 Sum_probs=10.9
Q ss_pred eeeeeccCCCce
Q psy3060 108 LRFVGRSGREAE 119 (268)
Q Consensus 108 LRFVGRSGRGKs 119 (268)
+=++|.+|.|||
T Consensus 18 i~v~G~~~~GKS 29 (179)
T 1z0f_A 18 YIIIGDMGVGKS 29 (179)
T ss_dssp EEEECSTTSSHH
T ss_pred EEEECCCCCCHH
Confidence 668999999997
No 154
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=23.54 E-value=20 Score=25.48 Aligned_cols=12 Identities=17% Similarity=0.047 Sum_probs=10.7
Q ss_pred eeeeeccCCCce
Q psy3060 108 LRFVGRSGREAE 119 (268)
Q Consensus 108 LRFVGRSGRGKs 119 (268)
+=++|.+|.|||
T Consensus 11 i~v~G~~~~GKs 22 (182)
T 3bwd_D 11 CVTVGDGAVGKT 22 (182)
T ss_dssp EEEECSTTSSHH
T ss_pred EEEECCCCCCHH
Confidence 558999999998
No 155
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=23.53 E-value=20 Score=33.13 Aligned_cols=18 Identities=11% Similarity=0.152 Sum_probs=13.3
Q ss_pred eeeeeccCCCceeeceEe
Q psy3060 108 LRFVGRSGREAEASPKDW 125 (268)
Q Consensus 108 LRFVGRSGRGKsFtlti~ 125 (268)
+=.||+||.|||=-+.+.
T Consensus 372 ~~ivG~sGsGKSTll~~l 389 (587)
T 3qf4_A 372 VAVLGETGSGKSTLMNLI 389 (587)
T ss_dssp EEEECSSSSSHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHH
Confidence 457999999999555443
No 156
>1x50_A Galectin-4; GAL-BIND lectin, sugar binding, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.52 E-value=1.6e+02 Score=23.36 Aligned_cols=24 Identities=8% Similarity=-0.105 Sum_probs=19.8
Q ss_pred CCceeeceEeeeeeeeEEeeecCc
Q psy3060 116 REAEASPKDWVGTLIWLIGIKNKH 139 (268)
Q Consensus 116 RGKsFtlti~v~t~~~~i~v~~~h 139 (268)
+|+.|+|+|.+.-..-.|.|..+|
T Consensus 105 ~G~~F~l~I~~~~~~f~V~VNg~~ 128 (164)
T 1x50_A 105 PGQFFDLSIRCGLDRFKVYANGQH 128 (164)
T ss_dssp TTSEEEEEEEECSSEEEEEESSSE
T ss_pred CCCeEEEEEEEcCCEEEEEECCEE
Confidence 799999999998888888885433
No 157
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=23.34 E-value=21 Score=25.58 Aligned_cols=12 Identities=17% Similarity=0.362 Sum_probs=10.6
Q ss_pred eeeeeccCCCce
Q psy3060 108 LRFVGRSGREAE 119 (268)
Q Consensus 108 LRFVGRSGRGKs 119 (268)
+=++|.+|.|||
T Consensus 21 i~v~G~~~~GKs 32 (183)
T 1moz_A 21 ILILGLDGAGKT 32 (183)
T ss_dssp EEEEEETTSSHH
T ss_pred EEEECCCCCCHH
Confidence 558999999998
No 158
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=23.28 E-value=20 Score=32.85 Aligned_cols=17 Identities=29% Similarity=0.421 Sum_probs=12.6
Q ss_pred eeeeeccCCCceeeceE
Q psy3060 108 LRFVGRSGREAEASPKD 124 (268)
Q Consensus 108 LRFVGRSGRGKsFtlti 124 (268)
+=.||+||.|||=-+.+
T Consensus 372 ~~ivG~sGsGKSTll~~ 388 (582)
T 3b5x_A 372 VALVGRSGSGKSTIANL 388 (582)
T ss_pred EEEECCCCCCHHHHHHH
Confidence 34789999999954443
No 159
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=23.09 E-value=20 Score=32.29 Aligned_cols=16 Identities=19% Similarity=0.194 Sum_probs=12.3
Q ss_pred eeeccCCCceeeceEe
Q psy3060 110 FVGRSGREAEASPKDW 125 (268)
Q Consensus 110 FVGRSGRGKsFtlti~ 125 (268)
.+|.||.|||=-|.+.
T Consensus 59 IiGpnGaGKSTLlr~i 74 (366)
T 3tui_C 59 VIGASGAGKSTLIRCV 74 (366)
T ss_dssp EECCTTSSHHHHHHHH
T ss_pred EEcCCCchHHHHHHHH
Confidence 6899999999555443
No 160
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=23.08 E-value=21 Score=25.99 Aligned_cols=13 Identities=8% Similarity=0.192 Sum_probs=11.0
Q ss_pred eeeeeccCCCcee
Q psy3060 108 LRFVGRSGREAEA 120 (268)
Q Consensus 108 LRFVGRSGRGKsF 120 (268)
+=++|.+|.|||=
T Consensus 51 i~vvG~~g~GKSs 63 (193)
T 2ged_A 51 IIIAGPQNSGKTS 63 (193)
T ss_dssp EEEECCTTSSHHH
T ss_pred EEEECCCCCCHHH
Confidence 4589999999983
No 161
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=23.01 E-value=21 Score=25.55 Aligned_cols=12 Identities=8% Similarity=0.141 Sum_probs=10.4
Q ss_pred eeeeeccCCCce
Q psy3060 108 LRFVGRSGREAE 119 (268)
Q Consensus 108 LRFVGRSGRGKs 119 (268)
+=++|.+|.|||
T Consensus 17 i~vvG~~~~GKs 28 (198)
T 3t1o_A 17 IVYYGPGLSGKT 28 (198)
T ss_dssp EEEECSTTSSHH
T ss_pred EEEECCCCCCHH
Confidence 458999999997
No 162
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=22.90 E-value=21 Score=25.61 Aligned_cols=12 Identities=33% Similarity=0.440 Sum_probs=10.4
Q ss_pred eeeeeccCCCce
Q psy3060 108 LRFVGRSGREAE 119 (268)
Q Consensus 108 LRFVGRSGRGKs 119 (268)
+=++|.+|.|||
T Consensus 21 i~v~G~~~~GKS 32 (183)
T 3kkq_A 21 LVVVGDGGVGKS 32 (183)
T ss_dssp EEEECSTTSSHH
T ss_pred EEEECCCCCCHH
Confidence 458999999996
No 163
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=22.90 E-value=21 Score=32.80 Aligned_cols=17 Identities=29% Similarity=0.315 Sum_probs=12.7
Q ss_pred eeeeeccCCCceeeceE
Q psy3060 108 LRFVGRSGREAEASPKD 124 (268)
Q Consensus 108 LRFVGRSGRGKsFtlti 124 (268)
+=.||.||.|||=-+.+
T Consensus 370 ~~ivG~sGsGKSTll~~ 386 (578)
T 4a82_A 370 VAFVGMSGGGKSTLINL 386 (578)
T ss_dssp EEEECSTTSSHHHHHTT
T ss_pred EEEECCCCChHHHHHHH
Confidence 34799999999954443
No 164
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=22.88 E-value=21 Score=25.32 Aligned_cols=13 Identities=8% Similarity=0.268 Sum_probs=11.0
Q ss_pred eeeeeccCCCcee
Q psy3060 108 LRFVGRSGREAEA 120 (268)
Q Consensus 108 LRFVGRSGRGKsF 120 (268)
+=++|.+|.|||=
T Consensus 11 i~v~G~~~~GKss 23 (178)
T 2lkc_A 11 VTIMGHVDHGKTT 23 (178)
T ss_dssp EEEESCTTTTHHH
T ss_pred EEEECCCCCCHHH
Confidence 4589999999983
No 165
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=22.86 E-value=21 Score=26.99 Aligned_cols=14 Identities=21% Similarity=0.354 Sum_probs=11.6
Q ss_pred eeeeeccCCCceee
Q psy3060 108 LRFVGRSGREAEAS 121 (268)
Q Consensus 108 LRFVGRSGRGKsFt 121 (268)
+=++|-||.|||--
T Consensus 21 I~l~G~~GsGKSTl 34 (202)
T 3t61_A 21 IVVMGVSGSGKSSV 34 (202)
T ss_dssp EEEECSTTSCHHHH
T ss_pred EEEECCCCCCHHHH
Confidence 55789999999953
No 166
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=22.85 E-value=20 Score=26.58 Aligned_cols=19 Identities=26% Similarity=0.288 Sum_probs=15.1
Q ss_pred ceeeeeccCCCceeeceEe
Q psy3060 107 DLRFVGRSGREAEASPKDW 125 (268)
Q Consensus 107 DLRFVGRSGRGKsFtlti~ 125 (268)
-+=++|.+|.||+.-+...
T Consensus 40 ~~~l~G~~G~GKTtL~~~i 58 (180)
T 3ec2_A 40 GLTFVGSPGVGKTHLAVAT 58 (180)
T ss_dssp EEEECCSSSSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 3678999999999876544
No 167
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=22.85 E-value=21 Score=26.06 Aligned_cols=12 Identities=17% Similarity=0.257 Sum_probs=10.7
Q ss_pred eeeeeccCCCce
Q psy3060 108 LRFVGRSGREAE 119 (268)
Q Consensus 108 LRFVGRSGRGKs 119 (268)
+=++|.+|.|||
T Consensus 23 i~v~G~~~~GKS 34 (189)
T 1z06_A 23 IIVIGDSNVGKT 34 (189)
T ss_dssp EEEECCTTSSHH
T ss_pred EEEECCCCCCHH
Confidence 568999999997
No 168
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=22.78 E-value=21 Score=28.14 Aligned_cols=17 Identities=12% Similarity=0.130 Sum_probs=13.1
Q ss_pred eeeeeccCCCceeeceE
Q psy3060 108 LRFVGRSGREAEASPKD 124 (268)
Q Consensus 108 LRFVGRSGRGKsFtlti 124 (268)
+-|+|-+|.|||=-+.+
T Consensus 23 i~i~G~~GsGKSTl~~~ 39 (230)
T 2vp4_A 23 VLIEGNIGSGKTTYLNH 39 (230)
T ss_dssp EEEECSTTSCHHHHHHT
T ss_pred EEEECCCCCCHHHHHHH
Confidence 46899999999955444
No 169
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=22.77 E-value=22 Score=28.79 Aligned_cols=12 Identities=42% Similarity=0.512 Sum_probs=10.4
Q ss_pred eeeeeccCCCce
Q psy3060 108 LRFVGRSGREAE 119 (268)
Q Consensus 108 LRFVGRSGRGKs 119 (268)
+=+||++|.|||
T Consensus 11 I~vvG~~g~GKS 22 (274)
T 3t5d_A 11 LMVVGESGLGKS 22 (274)
T ss_dssp EEEEECTTSSHH
T ss_pred EEEECCCCCCHH
Confidence 457999999997
No 170
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=22.64 E-value=21 Score=27.60 Aligned_cols=19 Identities=11% Similarity=0.193 Sum_probs=14.4
Q ss_pred eeeeeccCCCceeeceEee
Q psy3060 108 LRFVGRSGREAEASPKDWV 126 (268)
Q Consensus 108 LRFVGRSGRGKsFtlti~v 126 (268)
+-++|.+|.|||=-+.+..
T Consensus 36 v~L~G~nGaGKTTLlr~l~ 54 (158)
T 1htw_A 36 VYLNGDLGAGKTTLTRGML 54 (158)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 4589999999996665443
No 171
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=22.64 E-value=22 Score=26.46 Aligned_cols=12 Identities=25% Similarity=0.390 Sum_probs=10.7
Q ss_pred eeeeeccCCCce
Q psy3060 108 LRFVGRSGREAE 119 (268)
Q Consensus 108 LRFVGRSGRGKs 119 (268)
+=++|.+|.|||
T Consensus 26 i~~vG~~~vGKS 37 (190)
T 1m2o_B 26 LLFLGLDNAGKT 37 (190)
T ss_dssp EEEEESTTSSHH
T ss_pred EEEECCCCCCHH
Confidence 469999999997
No 172
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=22.56 E-value=22 Score=28.26 Aligned_cols=18 Identities=6% Similarity=0.071 Sum_probs=13.9
Q ss_pred eeeeeccCCCceeeceEe
Q psy3060 108 LRFVGRSGREAEASPKDW 125 (268)
Q Consensus 108 LRFVGRSGRGKsFtlti~ 125 (268)
+=.+|.+|.|||-.+.+.
T Consensus 28 igI~G~~GsGKSTl~k~L 45 (245)
T 2jeo_A 28 IGVSGGTASGKSTVCEKI 45 (245)
T ss_dssp EEEECSTTSSHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHH
Confidence 346899999999766654
No 173
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=22.56 E-value=21 Score=26.92 Aligned_cols=17 Identities=12% Similarity=0.151 Sum_probs=12.6
Q ss_pred eeeeeccCCCceeeceE
Q psy3060 108 LRFVGRSGREAEASPKD 124 (268)
Q Consensus 108 LRFVGRSGRGKsFtlti 124 (268)
+=++|-+|.|||-...+
T Consensus 5 i~l~G~~GsGKST~~~~ 21 (206)
T 1jjv_A 5 VGLTGGIGSGKTTIANL 21 (206)
T ss_dssp EEEECSTTSCHHHHHHH
T ss_pred EEEECCCCCCHHHHHHH
Confidence 34789999999955444
No 174
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=22.53 E-value=23 Score=26.39 Aligned_cols=12 Identities=8% Similarity=0.055 Sum_probs=10.3
Q ss_pred eeeeeccCCCce
Q psy3060 108 LRFVGRSGREAE 119 (268)
Q Consensus 108 LRFVGRSGRGKs 119 (268)
+=++|++|.|||
T Consensus 27 i~vvG~~~~GKS 38 (201)
T 3oes_A 27 VVILGYRCVGKT 38 (201)
T ss_dssp EEEEESTTSSHH
T ss_pred EEEECCCCcCHH
Confidence 458999999996
No 175
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=22.48 E-value=22 Score=26.37 Aligned_cols=16 Identities=19% Similarity=0.254 Sum_probs=12.3
Q ss_pred eeeeeccCCCceeece
Q psy3060 108 LRFVGRSGREAEASPK 123 (268)
Q Consensus 108 LRFVGRSGRGKsFtlt 123 (268)
+-++|-+|.|||--..
T Consensus 8 i~l~G~~GsGKST~~~ 23 (179)
T 2pez_A 8 VWLTGLSGAGKTTVSM 23 (179)
T ss_dssp EEEECCTTSSHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 4589999999985443
No 176
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=22.42 E-value=22 Score=27.15 Aligned_cols=14 Identities=14% Similarity=0.197 Sum_probs=11.7
Q ss_pred eeeeeccCCCceee
Q psy3060 108 LRFVGRSGREAEAS 121 (268)
Q Consensus 108 LRFVGRSGRGKsFt 121 (268)
+=++|-||.|||--
T Consensus 28 i~l~G~~GsGKsTl 41 (199)
T 3vaa_A 28 IFLTGYMGAGKTTL 41 (199)
T ss_dssp EEEECCTTSCHHHH
T ss_pred EEEEcCCCCCHHHH
Confidence 56899999999853
No 177
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=22.21 E-value=18 Score=30.82 Aligned_cols=19 Identities=11% Similarity=0.200 Sum_probs=15.2
Q ss_pred eeeeeccCCCceeeceEee
Q psy3060 108 LRFVGRSGREAEASPKDWV 126 (268)
Q Consensus 108 LRFVGRSGRGKsFtlti~v 126 (268)
.=.+|-||.|||+.+...+
T Consensus 38 ~~i~G~~G~GKs~~~~~~~ 56 (392)
T 4ag6_A 38 WTILAKPGAGKSFTAKMLL 56 (392)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred eEEEcCCCCCHHHHHHHHH
Confidence 4578999999999876544
No 178
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=22.17 E-value=22 Score=26.57 Aligned_cols=12 Identities=17% Similarity=0.437 Sum_probs=10.3
Q ss_pred eeeeeccCCCce
Q psy3060 108 LRFVGRSGREAE 119 (268)
Q Consensus 108 LRFVGRSGRGKs 119 (268)
+=++|++|.|||
T Consensus 14 i~vvG~~~~GKS 25 (218)
T 4djt_A 14 ICLIGDGGVGKT 25 (218)
T ss_dssp EEEECCTTSSHH
T ss_pred EEEECCCCCCHH
Confidence 448999999997
No 179
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=22.08 E-value=22 Score=31.63 Aligned_cols=17 Identities=18% Similarity=0.200 Sum_probs=13.3
Q ss_pred eeeeccCCCceeeceEe
Q psy3060 109 RFVGRSGREAEASPKDW 125 (268)
Q Consensus 109 RFVGRSGRGKsFtlti~ 125 (268)
=++|.||.|||=.|.+.
T Consensus 33 ~llGpnGsGKSTLLr~i 49 (372)
T 1g29_1 33 ILLGPSGCGKTTTLRMI 49 (372)
T ss_dssp EEECSTTSSHHHHHHHH
T ss_pred EEECCCCcHHHHHHHHH
Confidence 46899999999766543
No 180
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=22.04 E-value=24 Score=25.29 Aligned_cols=12 Identities=42% Similarity=0.625 Sum_probs=10.6
Q ss_pred eeeeeccCCCce
Q psy3060 108 LRFVGRSGREAE 119 (268)
Q Consensus 108 LRFVGRSGRGKs 119 (268)
+=++|.+|.|||
T Consensus 26 i~v~G~~~~GKS 37 (195)
T 3pqc_A 26 VAFVGRSNVGKS 37 (195)
T ss_dssp EEEEEBTTSSHH
T ss_pred EEEECCCCCCHH
Confidence 558999999997
No 181
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=21.87 E-value=22 Score=31.59 Aligned_cols=17 Identities=18% Similarity=0.163 Sum_probs=13.5
Q ss_pred eeeeccCCCceeeceEe
Q psy3060 109 RFVGRSGREAEASPKDW 125 (268)
Q Consensus 109 RFVGRSGRGKsFtlti~ 125 (268)
=++|.||.|||=.|.+.
T Consensus 33 ~llGpnGsGKSTLLr~i 49 (359)
T 2yyz_A 33 ALLGPSGCGKTTTLLML 49 (359)
T ss_dssp EEECSTTSSHHHHHHHH
T ss_pred EEEcCCCchHHHHHHHH
Confidence 36899999999777654
No 182
>1qmj_A Beta-galactoside-binding lectin; galectin, sugar binding protein; 2.15A {Gallus gallus} SCOP: b.29.1.3
Probab=21.86 E-value=58 Score=24.84 Aligned_cols=23 Identities=0% Similarity=-0.210 Sum_probs=20.0
Q ss_pred CCceeeceEeeeeeeeEEeeecCc
Q psy3060 116 REAEASPKDWVGTLIWLIGIKNKH 139 (268)
Q Consensus 116 RGKsFtlti~v~t~~~~i~v~~~h 139 (268)
+|+.|.|+|.+.-..-.|.|. .|
T Consensus 80 ~G~~F~l~i~~~~~~f~V~Vn-~~ 102 (132)
T 1qmj_A 80 QGDKVEICISFDAAEVKVKVP-EV 102 (132)
T ss_dssp TTCEEEEEEEECSSEEEEECS-SC
T ss_pred cCCeEEEEEEECCCEEEEEeC-Ce
Confidence 799999999998888888887 55
No 183
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=21.85 E-value=22 Score=31.79 Aligned_cols=18 Identities=22% Similarity=0.243 Sum_probs=13.6
Q ss_pred eeeeeccCCCceeeceEe
Q psy3060 108 LRFVGRSGREAEASPKDW 125 (268)
Q Consensus 108 LRFVGRSGRGKsFtlti~ 125 (268)
+=|+|.||.|||=.|.+.
T Consensus 218 ~~lvG~sG~GKSTLln~L 235 (358)
T 2rcn_A 218 SIFAGQSGVGKSSLLNAL 235 (358)
T ss_dssp EEEECCTTSSHHHHHHHH
T ss_pred EEEECCCCccHHHHHHHH
Confidence 468999999999555443
No 184
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=21.70 E-value=23 Score=25.97 Aligned_cols=12 Identities=17% Similarity=0.230 Sum_probs=10.5
Q ss_pred eeeeeccCCCce
Q psy3060 108 LRFVGRSGREAE 119 (268)
Q Consensus 108 LRFVGRSGRGKs 119 (268)
+=++|.+|.|||
T Consensus 26 i~~vG~~~~GKS 37 (194)
T 3reg_A 26 IVVVGDGAVGKT 37 (194)
T ss_dssp EEEECSTTSSHH
T ss_pred EEEECcCCCCHH
Confidence 558999999996
No 185
>1ww7_A Galectin; carbohydrate recognition domain,X-RAY crystallographic analysis, sulfate ION, sugar binding protein; 1.90A {Agrocybe cylindracea} PDB: 1ww4_A* 1ww6_A* 1ww5_A 2zgl_A 2zgm_A* 2zgn_A* 3afk_A* 3m3c_A* 3m3q_A* 2zgk_A 2zgs_A 2zgq_A 2zgr_A 3m3e_A* 2zgo_A* 3m3o_A* 2zgp_A 2zgu_A 2zgt_A
Probab=21.59 E-value=1.7e+02 Score=23.70 Aligned_cols=20 Identities=10% Similarity=-0.056 Sum_probs=17.9
Q ss_pred CceeeceEeeeeeeeEEeee
Q psy3060 117 EAEASPKDWVGTLIWLIGIK 136 (268)
Q Consensus 117 GKsFtlti~v~t~~~~i~v~ 136 (268)
|+.|+|.|.+....-.|.|.
T Consensus 99 G~~F~i~I~~~~~~f~V~vN 118 (160)
T 1ww7_A 99 GGKAMVTVFDHGDKYQVVIN 118 (160)
T ss_dssp SSCEEEEEEECSSEEEEEET
T ss_pred CCCEEEEEEEeCCEEEEEEC
Confidence 99999999998888888884
No 186
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=21.57 E-value=24 Score=27.77 Aligned_cols=13 Identities=31% Similarity=0.626 Sum_probs=11.2
Q ss_pred eeeeeccCCCcee
Q psy3060 108 LRFVGRSGREAEA 120 (268)
Q Consensus 108 LRFVGRSGRGKsF 120 (268)
+=++|++|.|||=
T Consensus 25 I~lvG~~g~GKSt 37 (260)
T 2xtp_A 25 IILVGKTGTGKSA 37 (260)
T ss_dssp EEEEECTTSCHHH
T ss_pred EEEECCCCCCHHH
Confidence 5689999999983
No 187
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=21.52 E-value=25 Score=25.54 Aligned_cols=12 Identities=17% Similarity=0.279 Sum_probs=10.7
Q ss_pred eeeeeccCCCce
Q psy3060 108 LRFVGRSGREAE 119 (268)
Q Consensus 108 LRFVGRSGRGKs 119 (268)
+=++|.+|.|||
T Consensus 11 i~vvG~~~~GKS 22 (199)
T 2gf0_A 11 VVVFGAGGVGKS 22 (199)
T ss_dssp EEEEECTTSSHH
T ss_pred EEEECCCCCcHH
Confidence 568999999997
No 188
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=21.50 E-value=23 Score=25.14 Aligned_cols=12 Identities=25% Similarity=0.448 Sum_probs=10.7
Q ss_pred eeeeeccCCCce
Q psy3060 108 LRFVGRSGREAE 119 (268)
Q Consensus 108 LRFVGRSGRGKs 119 (268)
+=++|.+|.|||
T Consensus 15 i~v~G~~~~GKS 26 (181)
T 2efe_B 15 LVLLGDVGAGKS 26 (181)
T ss_dssp EEEECCTTSCHH
T ss_pred EEEECcCCCCHH
Confidence 568999999998
No 189
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=21.26 E-value=25 Score=27.88 Aligned_cols=12 Identities=17% Similarity=0.288 Sum_probs=10.8
Q ss_pred eeeeeccCCCce
Q psy3060 108 LRFVGRSGREAE 119 (268)
Q Consensus 108 LRFVGRSGRGKs 119 (268)
+=+||++|.|||
T Consensus 29 i~vvG~~~~GKS 40 (299)
T 2aka_B 29 IAVVGGQSAGKS 40 (299)
T ss_dssp EEEEEBTTSCHH
T ss_pred EEEEeCCCCCHH
Confidence 558999999998
No 190
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=21.08 E-value=24 Score=27.07 Aligned_cols=12 Identities=8% Similarity=0.147 Sum_probs=10.6
Q ss_pred eeeeeccCCCce
Q psy3060 108 LRFVGRSGREAE 119 (268)
Q Consensus 108 LRFVGRSGRGKs 119 (268)
+=++|.+|.|||
T Consensus 32 I~vvG~~~vGKS 43 (228)
T 2qu8_A 32 IILSGAPNVGKS 43 (228)
T ss_dssp EEEECSTTSSHH
T ss_pred EEEECCCCCCHH
Confidence 458999999998
No 191
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=21.06 E-value=24 Score=31.44 Aligned_cols=16 Identities=19% Similarity=0.214 Sum_probs=13.2
Q ss_pred eeeccCCCceeeceEe
Q psy3060 110 FVGRSGREAEASPKDW 125 (268)
Q Consensus 110 FVGRSGRGKsFtlti~ 125 (268)
.+|.||.|||=.|.+.
T Consensus 46 llGpnGsGKSTLLr~i 61 (355)
T 1z47_A 46 LLGPSGSGKTTILRLI 61 (355)
T ss_dssp EECSTTSSHHHHHHHH
T ss_pred EECCCCCcHHHHHHHH
Confidence 6899999999777654
No 192
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=21.03 E-value=24 Score=30.29 Aligned_cols=19 Identities=5% Similarity=0.048 Sum_probs=14.5
Q ss_pred eeeeccCCCceeeceEeee
Q psy3060 109 RFVGRSGREAEASPKDWVG 127 (268)
Q Consensus 109 RFVGRSGRGKsFtlti~v~ 127 (268)
=.+|.||.|||=.+.+..+
T Consensus 94 gI~G~sGsGKSTL~~~L~g 112 (312)
T 3aez_A 94 GVAGSVAVGKSTTARVLQA 112 (312)
T ss_dssp EEECCTTSCHHHHHHHHHH
T ss_pred EEECCCCchHHHHHHHHHh
Confidence 4689999999977665543
No 193
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=20.97 E-value=24 Score=31.44 Aligned_cols=17 Identities=18% Similarity=0.175 Sum_probs=13.7
Q ss_pred eeeeccCCCceeeceEe
Q psy3060 109 RFVGRSGREAEASPKDW 125 (268)
Q Consensus 109 RFVGRSGRGKsFtlti~ 125 (268)
=.+|.||.|||=.|.+.
T Consensus 33 ~llGpnGsGKSTLLr~i 49 (362)
T 2it1_A 33 ALLGPSGSGKSTLLYTI 49 (362)
T ss_dssp EEECCTTSSHHHHHHHH
T ss_pred EEECCCCchHHHHHHHH
Confidence 46899999999777654
No 194
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=20.94 E-value=24 Score=28.44 Aligned_cols=16 Identities=25% Similarity=0.216 Sum_probs=12.5
Q ss_pred eeeeeccCCCceeece
Q psy3060 108 LRFVGRSGREAEASPK 123 (268)
Q Consensus 108 LRFVGRSGRGKsFtlt 123 (268)
+=.+|-||.|||=-+.
T Consensus 30 I~I~G~~GsGKSTl~k 45 (252)
T 4e22_A 30 ITVDGPSGAGKGTLCK 45 (252)
T ss_dssp EEEECCTTSSHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 5689999999994443
No 195
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=20.93 E-value=25 Score=25.68 Aligned_cols=12 Identities=25% Similarity=0.412 Sum_probs=10.6
Q ss_pred eeeeeccCCCce
Q psy3060 108 LRFVGRSGREAE 119 (268)
Q Consensus 108 LRFVGRSGRGKs 119 (268)
+=++|.+|.|||
T Consensus 17 i~v~G~~~~GKS 28 (206)
T 2bov_A 17 VIMVGSGGVGKS 28 (206)
T ss_dssp EEEECSTTSSHH
T ss_pred EEEECCCCCCHH
Confidence 568999999997
No 196
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=20.90 E-value=24 Score=25.55 Aligned_cols=12 Identities=8% Similarity=0.147 Sum_probs=10.2
Q ss_pred eeeeeccCCCce
Q psy3060 108 LRFVGRSGREAE 119 (268)
Q Consensus 108 LRFVGRSGRGKs 119 (268)
+=++|.+|.|||
T Consensus 20 i~v~G~~~~GKS 31 (199)
T 4bas_A 20 VVMCGLDNSGKT 31 (199)
T ss_dssp EEEECCTTSCHH
T ss_pred EEEECCCCCCHH
Confidence 348999999996
No 197
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=20.87 E-value=20 Score=25.69 Aligned_cols=12 Identities=17% Similarity=0.282 Sum_probs=10.5
Q ss_pred eeeeeccCCCce
Q psy3060 108 LRFVGRSGREAE 119 (268)
Q Consensus 108 LRFVGRSGRGKs 119 (268)
+=++|.+|.|||
T Consensus 10 i~~vG~~~vGKT 21 (178)
T 2iwr_A 10 LGVLGDARSGKS 21 (178)
T ss_dssp EEEECCGGGCHH
T ss_pred EEEECCCCCCHH
Confidence 458999999997
No 198
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=20.84 E-value=24 Score=31.52 Aligned_cols=16 Identities=19% Similarity=0.262 Sum_probs=13.1
Q ss_pred eeeccCCCceeeceEe
Q psy3060 110 FVGRSGREAEASPKDW 125 (268)
Q Consensus 110 FVGRSGRGKsFtlti~ 125 (268)
++|.||.|||=.|.+.
T Consensus 42 llGpnGsGKSTLLr~i 57 (372)
T 1v43_A 42 LLGPSGCGKTTTLRMI 57 (372)
T ss_dssp EECCTTSSHHHHHHHH
T ss_pred EECCCCChHHHHHHHH
Confidence 6899999999777654
No 199
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=20.79 E-value=26 Score=25.69 Aligned_cols=14 Identities=7% Similarity=0.135 Sum_probs=11.4
Q ss_pred eeeeeccCCCceee
Q psy3060 108 LRFVGRSGREAEAS 121 (268)
Q Consensus 108 LRFVGRSGRGKsFt 121 (268)
+=++|-+|.|||--
T Consensus 8 I~l~G~~GsGKST~ 21 (193)
T 2rhm_A 8 IIVTGHPATGKTTL 21 (193)
T ss_dssp EEEEESTTSSHHHH
T ss_pred EEEECCCCCCHHHH
Confidence 45789999999853
No 200
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=20.77 E-value=26 Score=25.58 Aligned_cols=12 Identities=25% Similarity=0.232 Sum_probs=10.4
Q ss_pred eeeeeccCCCce
Q psy3060 108 LRFVGRSGREAE 119 (268)
Q Consensus 108 LRFVGRSGRGKs 119 (268)
+=++|.+|.|||
T Consensus 10 i~v~G~~~vGKS 21 (184)
T 1m7b_A 10 IVVVGDSQCGKT 21 (184)
T ss_dssp EEEEESTTSSHH
T ss_pred EEEECCCCCCHH
Confidence 458999999997
No 201
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=20.74 E-value=46 Score=24.80 Aligned_cols=29 Identities=17% Similarity=0.044 Sum_probs=17.2
Q ss_pred ccccccceeeeccceeeecceeeeeccCCCce
Q psy3060 88 CGELRNCTAVMKNQVAKFNDLRFVGRSGREAE 119 (268)
Q Consensus 88 ~AELRN~tAvMKNqVArFNDLRFVGRSGRGKs 119 (268)
+-+.+|..--|++.- | -+=++|++|.|||
T Consensus 11 ~~~~~~~~~~m~~~~--~-ki~vvG~~~~GKS 39 (201)
T 2gco_A 11 SSGLVPRGSHMAAIR--K-KLVIVGDGACGKT 39 (201)
T ss_dssp CTTCCC-----CCEE--E-EEEEEESTTSSHH
T ss_pred cCCcccCCCCCcccc--e-EEEEECCCCCCHH
Confidence 456667777777643 2 2568999999998
No 202
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=20.62 E-value=23 Score=25.82 Aligned_cols=13 Identities=23% Similarity=0.286 Sum_probs=3.0
Q ss_pred eeeeeccCCCcee
Q psy3060 108 LRFVGRSGREAEA 120 (268)
Q Consensus 108 LRFVGRSGRGKsF 120 (268)
+=++|.+|.|||=
T Consensus 23 i~v~G~~~~GKss 35 (208)
T 2yc2_C 23 VAVVGEATVGKSA 35 (208)
T ss_dssp EEEC---------
T ss_pred EEEECCCCCCHHH
Confidence 5689999999984
No 203
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=20.61 E-value=43 Score=27.96 Aligned_cols=14 Identities=21% Similarity=0.297 Sum_probs=10.7
Q ss_pred eeeeeccCCCceee
Q psy3060 108 LRFVGRSGREAEAS 121 (268)
Q Consensus 108 LRFVGRSGRGKsFt 121 (268)
.=++|.+|.|||=-
T Consensus 27 ~~i~G~NGsGKS~l 40 (322)
T 1e69_A 27 TAIVGPNGSGKSNI 40 (322)
T ss_dssp EEEECCTTTCSTHH
T ss_pred EEEECCCCCcHHHH
Confidence 34789999999843
No 204
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=20.58 E-value=25 Score=24.66 Aligned_cols=17 Identities=18% Similarity=0.270 Sum_probs=13.7
Q ss_pred ceeeeeccCCCceeece
Q psy3060 107 DLRFVGRSGREAEASPK 123 (268)
Q Consensus 107 DLRFVGRSGRGKsFtlt 123 (268)
-+=++|-+|.||+.-+.
T Consensus 45 ~~ll~G~~G~GKT~l~~ 61 (195)
T 1jbk_A 45 NPVLIGEPGVGKTAIVE 61 (195)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred ceEEECCCCCCHHHHHH
Confidence 36689999999997654
No 205
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=20.53 E-value=26 Score=31.13 Aligned_cols=12 Identities=25% Similarity=0.343 Sum_probs=10.8
Q ss_pred eeeeeccCCCce
Q psy3060 108 LRFVGRSGREAE 119 (268)
Q Consensus 108 LRFVGRSGRGKs 119 (268)
+=|.|.||.|||
T Consensus 147 vl~~G~sG~GKS 158 (314)
T 1ko7_A 147 VLITGDSGIGKS 158 (314)
T ss_dssp EEEEESTTSSHH
T ss_pred EEEEeCCCCCHH
Confidence 568999999998
No 206
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=20.52 E-value=26 Score=31.55 Aligned_cols=17 Identities=18% Similarity=0.405 Sum_probs=13.4
Q ss_pred eeeeccCCCceeeceEe
Q psy3060 109 RFVGRSGREAEASPKDW 125 (268)
Q Consensus 109 RFVGRSGRGKsFtlti~ 125 (268)
=++|.||.|||=.|.+.
T Consensus 51 ~llGpsGsGKSTLLr~i 67 (390)
T 3gd7_A 51 GLLGRTGSGKSTLLSAF 67 (390)
T ss_dssp EEEESTTSSHHHHHHHH
T ss_pred EEECCCCChHHHHHHHH
Confidence 46899999999766554
No 207
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=20.48 E-value=33 Score=25.32 Aligned_cols=13 Identities=15% Similarity=0.394 Sum_probs=11.1
Q ss_pred ceeeeeccCCCce
Q psy3060 107 DLRFVGRSGREAE 119 (268)
Q Consensus 107 DLRFVGRSGRGKs 119 (268)
.+=++|.+|.|||
T Consensus 25 ki~vvG~~~~GKS 37 (192)
T 2fg5_A 25 KVCLLGDTGVGKS 37 (192)
T ss_dssp EEEEEECTTSSHH
T ss_pred EEEEECcCCCCHH
Confidence 3668999999997
No 208
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=20.43 E-value=25 Score=26.40 Aligned_cols=12 Identities=17% Similarity=0.437 Sum_probs=10.4
Q ss_pred eeeeeccCCCce
Q psy3060 108 LRFVGRSGREAE 119 (268)
Q Consensus 108 LRFVGRSGRGKs 119 (268)
+=+||++|.|||
T Consensus 9 v~lvG~~~vGKS 20 (192)
T 2cjw_A 9 VVLIGEQGVGKS 20 (192)
T ss_dssp EEEECSTTSSHH
T ss_pred EEEECCCCCCHH
Confidence 458999999997
No 209
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=20.37 E-value=27 Score=25.98 Aligned_cols=12 Identities=8% Similarity=0.174 Sum_probs=10.5
Q ss_pred eeeeeccCCCce
Q psy3060 108 LRFVGRSGREAE 119 (268)
Q Consensus 108 LRFVGRSGRGKs 119 (268)
+=++|.+|.|||
T Consensus 23 i~~vG~~~vGKT 34 (196)
T 3llu_A 23 ILLMGLRRSGKS 34 (196)
T ss_dssp EEEEESTTSSHH
T ss_pred EEEECCCCCCHH
Confidence 458999999997
No 210
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=20.30 E-value=27 Score=26.34 Aligned_cols=12 Identities=17% Similarity=0.111 Sum_probs=10.2
Q ss_pred eeeeeccCCCce
Q psy3060 108 LRFVGRSGREAE 119 (268)
Q Consensus 108 LRFVGRSGRGKs 119 (268)
+=++|.+|.|||
T Consensus 33 i~vvG~~~~GKS 44 (204)
T 4gzl_A 33 CVVVGDGAVGKT 44 (204)
T ss_dssp EEEEESTTSSHH
T ss_pred EEEECcCCCCHH
Confidence 347999999997
No 211
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=20.28 E-value=26 Score=25.97 Aligned_cols=12 Identities=17% Similarity=0.362 Sum_probs=10.7
Q ss_pred eeeeeccCCCce
Q psy3060 108 LRFVGRSGREAE 119 (268)
Q Consensus 108 LRFVGRSGRGKs 119 (268)
+=++|.+|.|||
T Consensus 29 i~vvG~~~~GKS 40 (192)
T 2il1_A 29 VIIIGSRGVGKT 40 (192)
T ss_dssp EEEECSTTSSHH
T ss_pred EEEECCCCCCHH
Confidence 568999999997
No 212
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=20.25 E-value=25 Score=30.20 Aligned_cols=18 Identities=11% Similarity=0.176 Sum_probs=13.6
Q ss_pred eeeeeccCCCceeeceEe
Q psy3060 108 LRFVGRSGREAEASPKDW 125 (268)
Q Consensus 108 LRFVGRSGRGKsFtlti~ 125 (268)
+-++|++|.|||=.|...
T Consensus 58 v~i~G~~GaGKSTLl~~l 75 (337)
T 2qm8_A 58 VGITGVPGVGKSTTIDAL 75 (337)
T ss_dssp EEEECCTTSCHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHH
Confidence 458999999998655443
No 213
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=20.24 E-value=26 Score=30.27 Aligned_cols=18 Identities=17% Similarity=0.219 Sum_probs=13.6
Q ss_pred eeeeccCCCceeeceEee
Q psy3060 109 RFVGRSGREAEASPKDWV 126 (268)
Q Consensus 109 RFVGRSGRGKsFtlti~v 126 (268)
=++|.||.|||=.+.+..
T Consensus 179 ~ivG~sGsGKSTll~~l~ 196 (361)
T 2gza_A 179 VVAGETGSGKTTLMKALM 196 (361)
T ss_dssp EEEESSSSCHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHH
Confidence 378999999996665543
No 214
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=20.17 E-value=27 Score=26.44 Aligned_cols=68 Identities=18% Similarity=0.205 Sum_probs=31.1
Q ss_pred eeeeeEeeeccCCccccCCCCCCcccccceeeeeeeeee-----eeeccccccCCcCCC--CceeeeecCCCCccCCCC
Q psy3060 195 LCGLVLLTHFSSGARWDSASAPSIPISNVVHHTVRLFGY-----HIHKTKLLKSPFEKS--EPVKLEFRDPGLKSYDAT 266 (268)
Q Consensus 195 ~c~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 266 (268)
-|-+++++|.....+- ...|+ +.+.+...+.|... ..-.-.+.|+.+... +...+++.+-|+.-|...
T Consensus 163 ~~~vi~~~h~~~~~~~--~~~~~--~~~~~D~vi~L~~~~~~~~~~r~l~v~K~R~~~~~~~~~~f~i~~~Gi~~~~~~ 237 (247)
T 2dr3_A 163 GCTSIFVSQVSVGERG--FGGPG--VEHGVDGIIRLDLDEIDGELKRSLIVWKMRGTSHSMRRHPFDITDKGIIVYPDK 237 (247)
T ss_dssp TCEEEEEEECC----C--CC-CC--HHHHSSEEEEEEEEEETTEEEEEEEEEEETTSCCCCBCEEEEEETTEEEECTTC
T ss_pred CCeEEEEecCCCCccc--ccccc--cceeEEEEEEEEEEccCCeeEEEEEEEECCCCCCCCceEEEEEcCCCEEEecCc
Confidence 4778899998876541 12232 33434333332211 112223445444332 455666677788776543
No 215
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=20.11 E-value=27 Score=26.35 Aligned_cols=12 Identities=25% Similarity=0.545 Sum_probs=10.7
Q ss_pred eeeeeccCCCce
Q psy3060 108 LRFVGRSGREAE 119 (268)
Q Consensus 108 LRFVGRSGRGKs 119 (268)
+=++|.+|.||+
T Consensus 41 i~ivG~~gvGKT 52 (226)
T 2hf9_A 41 FDFMGAIGSGKT 52 (226)
T ss_dssp EEEEESTTSSHH
T ss_pred EEEEcCCCCCHH
Confidence 568999999998
No 216
>1yjd_C TP44, T-cell-specific surface glycoprotein CD28; IGSF, CD28 homodimer, immune system-signaling protein comple; HET: NAG; 2.70A {Homo sapiens} SCOP: b.1.1.1
Probab=20.07 E-value=2.4e+02 Score=21.91 Aligned_cols=73 Identities=10% Similarity=0.011 Sum_probs=44.9
Q ss_pred CceEEeecCcccccCCCCCcceEEEEeeecCCCeEEEEe--ecCCCccccccccceeeeccceeeecceeeeeccCCCce
Q psy3060 42 PHVVCTVLPTHWRSNKTLPVAFKVVALGDVMDGTIVTIR--AGNDENYCGELRNCTAVMKNQVAKFNDLRFVGRSGREAE 119 (268)
Q Consensus 42 P~~lCs~LP~HWRsNKtLP~aFkVvaLg~VpDGT~Vtv~--AGNDEN~~AELRN~tAvMKNqVArFNDLRFVGRSGRGKs 119 (268)
=.+-|+.--+| -+..|+|.-+...|.+..+.+. .+|.+| ++.--+..||.|. +.+++
T Consensus 20 VtL~C~y~~~~------~~~e~~~~WYrq~pg~~~~l~~~~~~~~~~--------------~~~~~~~~~~~~s-~s~~s 78 (140)
T 1yjd_C 20 VNLSCKYSYNL------FSREFRASLHKGLDSAVEVCVVYGNYSQQL--------------QVYSKTGFNCDGK-LGNES 78 (140)
T ss_dssp EEEEEEESCCS------SCSEEEEEEEESTTCCCEEEEEEEESSSCC--------------EEECSSSCEEEEE-ECSSE
T ss_pred EEEEEECCCCC------ccceeEEEEEecCCCCceEEEEecCccccc--------------cccCCCCceEEee-ccCCE
Confidence 34567764332 1223788888777778888777 444443 1111125667776 77899
Q ss_pred eeceEee------eeeeeEEee
Q psy3060 120 ASPKDWV------GTLIWLIGI 135 (268)
Q Consensus 120 Ftlti~v------~t~~~~i~v 135 (268)
|+|+|.- +.|-=++.+
T Consensus 79 ~sLtIs~l~~~Dta~YfCa~~~ 100 (140)
T 1yjd_C 79 VTFYLQNLYVNQTDIYFCKIEV 100 (140)
T ss_dssp EEEEEESCCGGGCEEEEEEEEE
T ss_pred EEEEECCCChhhCEEEEEEEEe
Confidence 9999984 556666555
Done!