RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy3060
(268 letters)
>1eaq_A RUNT-related transcription factor 1; transcription/DNA, acute
myeloid leukemia, AML, RUNX1, RUNT domain, chloride
binding, IG fold; HET: MSE; 1.25A {Mus musculus} SCOP:
b.2.5.6 PDB: 1ean_A 1eao_A* 2j6w_A 1e50_A 1h9d_A* 1ljm_A
1cmo_A 1hjc_A* 1hjb_C* 1io4_C 1co1_A
Length = 140
Score = 163 bits (414), Expect = 2e-51
Identities = 70/96 (72%), Positives = 82/96 (85%)
Query: 21 AERTLDSLLAEHPGELTRTGCPHVVCTVLPTHWRSNKTLPVAFKVVALGDVMDGTIVTIR 80
+R++ +LA+HPGEL RT P+ + +VLPTHWRSNKTLP+AFKVVALGDV DGT+VT+
Sbjct: 2 GDRSMVEVLADHPGELVRTDSPNFLSSVLPTHWRSNKTLPIAFKVVALGDVPDGTLVTVM 61
Query: 81 AGNDENYCGELRNCTAVMKNQVAKFNDLRFVGRSGR 116
AGNDENY ELRN TA MKNQVA+FNDLRFVGRSGR
Sbjct: 62 AGNDENYSAELRNATAAMKNQVARFNDLRFVGRSGR 97
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 41.2 bits (96), Expect = 3e-04
Identities = 49/234 (20%), Positives = 75/234 (32%), Gaps = 49/234 (20%)
Query: 27 SLLAEHPGELTRTGCPHVV------CTVL--PTHWRSNKTLPVAFKVVALGDVMDGTIVT 78
LL E+ L +T ++ + P +SN L F+ V G+ +V
Sbjct: 107 KLLQENDTTLVKTK--ELIKNYITARIMAKRPFDKKSNSAL---FRAVGEGNA---QLVA 158
Query: 79 IRAG--NDENYCGELRNCTAVMKNQVAKF-----NDLRFVGRSGREAEASPKDWVGTLIW 131
I G N ++Y ELR+ V L + R+ +AE + L W
Sbjct: 159 IFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEW 218
Query: 132 LIGIKNKH-QQY--EIEISFLINQITASISELLRMYEKTLRLGHLILLVPIVPNHLSKID 188
L N + Y I IS + + L Y T +L P L
Sbjct: 219 LENPSNTPDKDYLLSIPISCPLIGVIQ-----LAHYVVTAKLLGF------TPGELR--S 265
Query: 189 IFTGGSLC--GLVLLTHFSSGARWDSASAPSIPISNVVHHTVRLF--GYHIHKT 238
G + GLV + W+S +V LF G ++
Sbjct: 266 YLKGATGHSQGLVTAVAIAETDSWESF------FVSVRKAITVLFFIGVRCYEA 313
Score = 32.7 bits (74), Expect = 0.12
Identities = 36/198 (18%), Positives = 71/198 (35%), Gaps = 68/198 (34%)
Query: 54 RSNKTLPVAFKV-VAL--GDVMDGTIVTIRAGNDENYCG---ELRNCTAVM-KNQV-AKF 105
++N LP +V ++L G +V+ G ++ G LR A +Q F
Sbjct: 355 KTNSHLPAGKQVEISLVNGA--KNLVVS---GPPQSLYGLNLTLRKAKAPSGLDQSRIPF 409
Query: 106 ND--LRFVGR----SGREAEA---SPKDWVGTLIWLIGIKNKHQQYEIEISFLINQITAS 156
++ L+F R + + S L+ + + ++ + N
Sbjct: 410 SERKLKFSNRFLPVA-----SPFHSH--------LLVPASDLINKDLVKNNVSFNA---- 452
Query: 157 ISEL------------LRMYEKTL--RLGHLILLVPI--------VPNHLSKIDIFTGGS 194
++ LR+ ++ R+ I+ +P+ H+ +D F G
Sbjct: 453 -KDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHI--LD-FGPGG 508
Query: 195 LCGLVLLTHFS---SGAR 209
GL +LTH + +G R
Sbjct: 509 ASGLGVLTHRNKDGTGVR 526
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 35.7 bits (81), Expect = 0.006
Identities = 9/24 (37%), Positives = 11/24 (45%), Gaps = 5/24 (20%)
Query: 246 EKSEPVKLEFRDPGLKSY--DATP 267
EK KL+ LK Y D+ P
Sbjct: 18 EKQALKKLQAS---LKLYADDSAP 38
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 32.5 bits (73), Expect = 0.15
Identities = 49/299 (16%), Positives = 84/299 (28%), Gaps = 112/299 (37%)
Query: 3 LTTENMNDNENFISAEVLAERTLD------------SLLAE----HPGELTRTGCPHVVC 46
LTT +F+SA +LD SLL + P +L P V
Sbjct: 270 LTTRFKQ-VTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDL-----PREVL 323
Query: 47 TVLP--------------THWRSNKTLPVAFKVVALGDVMDGTIVTIRAGNDENYCGELR 92
T P W + K + L +++ ++ + + E R
Sbjct: 324 TTNPRRLSIIAESIRDGLATWDNWKHV----NCDKLTTIIESSLNVL----EPA---EYR 372
Query: 93 NCTAVMKNQVAKFNDLR-FVGRSGREAEASPKD-WV--GTL--IWLIGIKNKHQQY--EI 144
F+ L F P + L IW IK+ ++
Sbjct: 373 KM----------FDRLSVF-----------PPSAHIPTILLSLIWFDVIKSDVMVVVNKL 411
Query: 145 EISFLINQITASISELLRMYEKTLRLGHLILLVPIVPN------HLSKIDIFTGGSLCGL 198
L+ + + E T+ + I L V H S
Sbjct: 412 HKYSLVEK---------QPKESTISI-PSIYLELKVKLENEYALHRS------------- 448
Query: 199 VLLTHFSSGARWDSASAPSIPISN-VVHHTVRLFGYHIHKTKLLKSPFEKSEPVKLEFR 256
++ H++ +DS + H G+H+ + + V L+FR
Sbjct: 449 -IVDHYNIPKTFDSDDLIPPYLDQYFYSH----IGHHLKNIEHPER-MTLFRMVFLDFR 501
Score = 30.6 bits (68), Expect = 0.61
Identities = 37/256 (14%), Positives = 82/256 (32%), Gaps = 66/256 (25%)
Query: 9 NDNENFISAEVLAERTLDSLLAEHPGELTRTGCPHVVCTVLPTHWRSNKTLPVAFKVVAL 68
D ++ +L++ +D ++ ++ T + L + + F +
Sbjct: 36 KDVQDMPK-SILSKEEIDHIIMS-KDAVSGT---LRLFWTLL---SKQEEMVQKF----V 83
Query: 69 GDVMD---GTIVT-------IRAGNDENYCGELRNCTAVMKNQVAKFNDLRFVGRSG--- 115
+V+ +++ + Y E R+ + N F V R
Sbjct: 84 EEVLRINYKFLMSPIKTEQRQPSMMTRMYI-EQRD---RLYNDNQVFAK-YNVSRLQPYL 138
Query: 116 --REA--EASPKDWVGTLIWLIGI-KNKHQQYEIEISFLINQITASISELLRMYEKT--L 168
R+A E P V + ++G K +++ + S +M K L
Sbjct: 139 KLRQALLELRPAKNV-LIDGVLGSGK----------TWVALDVCLSYKVQCKMDFKIFWL 187
Query: 169 RLGHLI---LLVPIVPNHLSKIDIFTGGSLCGLVLLTHFSSGARWDSASAPSIPISNVVH 225
L + ++ ++ L +ID + +R D +S + I ++
Sbjct: 188 NLKNCNSPETVLEMLQKLLYQID----PNWT-----------SRSDHSSNIKLRIHSIQA 232
Query: 226 HTVRLFGYHIHKTKLL 241
RL ++ LL
Sbjct: 233 ELRRLLKSKPYENCLL 248
Score = 29.8 bits (66), Expect = 1.0
Identities = 13/80 (16%), Positives = 32/80 (40%), Gaps = 7/80 (8%)
Query: 105 FNDLRFVGRSGREAEASPKDWVGTLIWLIGIKNKHQQYEIEISFLINQITASISELLRMY 164
F D RF+ + R +++ + G+++ + ++ Y + ++ +I + L
Sbjct: 497 FLDFRFLEQKIR-HDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKI 555
Query: 165 E------KTLRLGHLILLVP 178
E K L + L+
Sbjct: 556 EENLICSKYTDLLRIALMAE 575
>1h7n_A 5-aminolaevulinic acid dehydratase; lyase, aldolase, TIM barrel,
tetrapyrrole synthesis; HET: SHF; 1.6A {Saccharomyces
cerevisiae} SCOP: c.1.10.3 PDB: 1h7p_A* 1h7r_A* 1ohl_A*
1qml_A 1qnv_A 1w31_A* 1h7o_A* 1eb3_A* 1gjp_A* 1ylv_A*
1aw5_A
Length = 342
Score = 29.8 bits (68), Expect = 0.83
Identities = 11/34 (32%), Positives = 16/34 (47%), Gaps = 3/34 (8%)
Query: 65 VVALGDVMDGTIVTIRAGNDENYCGELRNCTAVM 98
VA D++DG I I+ G L + T V+
Sbjct: 175 CVAPSDMIDGRIRDIKRGLINA---NLAHKTFVL 205
>1pv8_A Delta-aminolevulinic acid dehydratase; porphobilinogen synthase,
tetrapyrrole biosynthesis, reactio intermediate, lyase;
HET: PB1; 2.20A {Homo sapiens} SCOP: c.1.10.3 PDB:
1e51_A* 2z0i_A 2z1b_A
Length = 330
Score = 29.0 bits (66), Expect = 1.3
Identities = 12/34 (35%), Positives = 17/34 (50%), Gaps = 3/34 (8%)
Query: 65 VVALGDVMDGTIVTIRAGNDENYCGELRNCTAVM 98
VVA D+MDG + I+ + L N +VM
Sbjct: 164 VVAPSDMMDGRVEAIKEALMAH---GLGNRVSVM 194
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR;
fatty acid synthase, acyl-carrier-protein, beta-ketoacyl
RED beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 1688
Score = 29.1 bits (65), Expect = 1.7
Identities = 11/50 (22%), Positives = 23/50 (46%), Gaps = 15/50 (30%)
Query: 223 VVHHT-VRLF------GYHIHKTKLLK--------SPFEKSEPVKLEFRD 257
++ H+ +RL GY+ K ++++ PFE S+ +F+
Sbjct: 898 ILEHSGIRLIEPELFNGYNPEKKEMIQEVIVEEDLEPFEASKETAEQFKH 947
>1l6s_A Porphobilinogen synthase; dehydratase, lyase; HET: CME DSB; 1.70A
{Escherichia coli} SCOP: c.1.10.3 PDB: 1i8j_A* 1l6y_A*
1b4e_A
Length = 323
Score = 27.9 bits (63), Expect = 3.5
Identities = 7/22 (31%), Positives = 9/22 (40%)
Query: 65 VVALGDVMDGTIVTIRAGNDEN 86
+A MDG + IR D
Sbjct: 160 FIAPSAAMDGQVQAIRQALDAA 181
>1w1z_A Delta-aminolevulinic acid dehydratase; synthase, tetrapyrrole
biosynthesis, ALAD, porphyrin biosynt heme biosynthesis,
lyase; 2.6A {Prosthecochloris vibrioformis} SCOP:
c.1.10.3 PDB: 2c1h_A*
Length = 328
Score = 27.1 bits (61), Expect = 6.5
Identities = 10/22 (45%), Positives = 12/22 (54%)
Query: 65 VVALGDVMDGTIVTIRAGNDEN 86
V+ D+MDG I IR DE
Sbjct: 166 FVSPSDMMDGRIGAIREALDET 187
>1w5q_A Delta-aminolevulinic acid dehydratase; synthase, evolution,
metalloenzyme, porphobilinogen synthase, protein
engineering,; 1.4A {Pseudomonas aeruginosa} PDB: 1w5p_A*
1w5o_A 1w5n_A 1w56_A 1w5m_A 1w54_A 1gzg_A* 1b4k_A
2woq_A* 2c14_A* 2c16_A* 2c19_A* 2c15_A* 2c18_A* 2c13_A*
Length = 337
Score = 27.1 bits (61), Expect = 7.2
Identities = 10/22 (45%), Positives = 12/22 (54%)
Query: 65 VVALGDVMDGTIVTIRAGNDEN 86
VVA D+MDG I IR +
Sbjct: 171 VVAPSDMMDGRIGAIREALESA 192
>3obk_A Delta-aminolevulinic acid dehydratase; ssgcid, structural genomics,
seattle structural genomics CEN infectious disease,
lyase; HET: PBG; 2.50A {Toxoplasma gondii ME49}
Length = 356
Score = 27.1 bits (61), Expect = 7.2
Identities = 8/22 (36%), Positives = 11/22 (50%)
Query: 65 VVALGDVMDGTIVTIRAGNDEN 86
+V D+MDG + IR D
Sbjct: 179 MVCPSDMMDGRVSAIRESLDME 200
>3bso_A RNA dependent RNA polymerase; RNA-dependent RNA polymerase, viral
replication, antiviral E inhibitor, helicase, hydrolase;
HET: CTP; 1.74A {Norwalk virus} PDB: 3bsn_A* 3h5x_A*
3h5y_A* 1sh0_A 1sh2_A 1sh3_A 2b43_A
Length = 510
Score = 26.7 bits (58), Expect = 8.6
Identities = 12/54 (22%), Positives = 18/54 (33%), Gaps = 13/54 (24%)
Query: 213 ASAPSIPISNVVHHTVRLFGYHIHKTKLLKSPF-----EKSEPVKLEFRDPGLK 261
AP + + + KTK +S EP L +DP +K
Sbjct: 9 CGAPILGPGSAPKLS--------TKTKFWRSSTAPLPPGTYEPAYLGGKDPRVK 54
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.136 0.411
Gapped
Lambda K H
0.267 0.0810 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,096,139
Number of extensions: 236067
Number of successful extensions: 384
Number of sequences better than 10.0: 1
Number of HSP's gapped: 382
Number of HSP's successfully gapped: 16
Length of query: 268
Length of database: 6,701,793
Length adjustment: 92
Effective length of query: 176
Effective length of database: 4,133,061
Effective search space: 727418736
Effective search space used: 727418736
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (25.2 bits)