RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy3060
         (268 letters)



>d1eaqa_ b.2.5.6 (A:) Acute myeloid leukemia 1 protein (AML1), RUNT
           domain {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 124

 Score =  183 bits (467), Expect = 7e-60
 Identities = 69/93 (74%), Positives = 80/93 (86%)

Query: 24  TLDSLLAEHPGELTRTGCPHVVCTVLPTHWRSNKTLPVAFKVVALGDVMDGTIVTIRAGN 83
           ++  +LA+HPGEL RT  P+ + +VLPTHWRSNKTLP+AFKVVALGDV DGT+VT+ AGN
Sbjct: 1   SMVEVLADHPGELVRTDSPNFLSSVLPTHWRSNKTLPIAFKVVALGDVPDGTLVTVMAGN 60

Query: 84  DENYCGELRNCTAVMKNQVAKFNDLRFVGRSGR 116
           DENY  ELRN TA MKNQVA+FNDLRFVGRSGR
Sbjct: 61  DENYSAELRNATAAMKNQVARFNDLRFVGRSGR 93


>d2caya1 b.55.1.12 (A:1-99,A:252-282) Vacuolar protein sorting
           protein 36, VPS36 {Baker's yeast (Saccharomyces
           cerevisiae) [TaxId: 4932]}
          Length = 130

 Score = 27.5 bits (61), Expect = 0.77
 Identities = 7/45 (15%), Positives = 16/45 (35%), Gaps = 2/45 (4%)

Query: 217 SIPISNVVH--HTVRLFGYHIHKTKLLKSPFEKSEPVKLEFRDPG 259
            + + ++ +  ++              K P   +E V+L FR   
Sbjct: 68  GLELDDLAYVNYSSGFLTRSPRLILFFKDPSSSTEFVQLSFRKSD 112


>d1f3ub_ b.65.1.1 (B:) TFIIF alpha subunit, Rap74 {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 149

 Score = 26.7 bits (59), Expect = 1.8
 Identities = 8/33 (24%), Positives = 10/33 (30%), Gaps = 1/33 (3%)

Query: 233 YHIHK-TKLLKSPFEKSEPVKLEFRDPGLKSYD 264
           Y+I       K  F      +LE      K Y 
Sbjct: 22  YNIMAFNAADKVNFATWNQARLERDLSNKKIYQ 54


>d1zkia1 d.38.1.5 (A:4-129) Hypothetical protein PA5202 {Pseudomonas
           aeruginosa [TaxId: 287]}
          Length = 126

 Score = 25.7 bits (56), Expect = 4.0
 Identities = 13/75 (17%), Positives = 36/75 (48%)

Query: 152 QITASISELLRMYEKTLRLGHLILLVPIVPNHLSKIDIFTGGSLCGLVLLTHFSSGARWD 211
           Q+ ++ SEL+ +   +L  G   + +P+  +  ++  +  GG+L  L+ +T   + +   
Sbjct: 6   QMISAYSELVGLDPVSLGDGVAEVRLPMAAHLRNRGGVMHGGALFSLMDVTMGLACSSSH 65

Query: 212 SASAPSIPISNVVHH 226
                S+ +   +++
Sbjct: 66  GFDRQSVTLECKINY 80


>d1vbga2 c.8.1.1 (A:383-517) Pyruvate phosphate dikinase, central
           domain {Maize (Zea mays) [TaxId: 4577]}
          Length = 135

 Score = 25.0 bits (54), Expect = 7.2
 Identities = 7/52 (13%), Positives = 16/52 (30%), Gaps = 5/52 (9%)

Query: 40  GCPHVVCTVLPTHWRSNKTLPVAFKVVALGDVMDGTIVTIRAGNDENYCGEL 91
           G   V          + K + +   V+      +G  +++     E   G+ 
Sbjct: 85  GKCCVSGCSGIRVNDAEKLVTIGGHVLR-----EGEWLSLNGSTGEVILGKQ 131


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.320    0.136    0.411 

Gapped
Lambda     K      H
   0.267   0.0501    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 993,956
Number of extensions: 44132
Number of successful extensions: 113
Number of sequences better than 10.0: 1
Number of HSP's gapped: 113
Number of HSP's successfully gapped: 11
Length of query: 268
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 184
Effective length of database: 1,254,276
Effective search space: 230786784
Effective search space used: 230786784
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.3 bits)