Query psy3063
Match_columns 110
No_of_seqs 108 out of 212
Neff 3.3
Searched_HMMs 29240
Date Sat Aug 17 00:44:48 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3063.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/3063hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2rr3_B OSBP, oxysterol-binding 14.4 75 0.0025 19.5 1.4 11 74-84 10-20 (47)
2 1zlh_B Carboxypeptidase inhibi 9.7 82 0.0028 21.0 0.6 10 58-67 65-74 (75)
3 3aq2_A 6B protein; miRNA machi 9.2 83 0.0028 24.5 0.5 35 41-84 142-176 (207)
4 4dkx_A RAS-related protein RAB 9.1 69 0.0024 22.9 0.0 13 57-69 201-213 (216)
5 1as5_A Conotoxin Y-PIIIE; neur 8.6 1.1E+02 0.0038 16.6 0.7 16 62-78 3-18 (26)
6 2gjh_A Designed protein; oblig 8.4 1.2E+02 0.0042 19.2 1.0 16 39-54 33-48 (62)
7 2cr5_A Reproduction 8; UBX dom 8.1 4.5E+02 0.015 17.0 3.7 11 27-37 21-31 (109)
8 1qyp_A RNA polymerase II; tran 7.8 94 0.0032 18.2 0.2 26 82-108 15-41 (57)
9 2bcg_Y Protein YP2, GTP-bindin 7.4 91 0.0031 20.7 0.0 8 57-64 199-206 (206)
10 3gv3_A CXCL12 protein; SDF, ch 7.3 1E+02 0.0034 18.5 0.2 12 60-71 3-14 (63)
No 1
>2rr3_B OSBP, oxysterol-binding protein 1; lipid transport, transport, protein-peptide complex, major S protein domain, protein binding; NMR {Homo sapiens}
Probab=14.40 E-value=75 Score=19.50 Aligned_cols=11 Identities=18% Similarity=0.495 Sum_probs=7.8
Q ss_pred CCCCCCCCccc
Q psy3063 74 DESSSDSSDDE 84 (110)
Q Consensus 74 ~ESSse~sdde 84 (110)
||.|+|++|-|
T Consensus 10 Ge~SdEDed~E 20 (47)
T 2rr3_B 10 GDMSDEDDENE 20 (47)
T ss_dssp CCSCCCCCSSC
T ss_pred ccccccccccc
Confidence 88888866544
No 2
>1zlh_B Carboxypeptidase inhibitor; inhibitor-metallocarboxypeptidase complex, beta-defensin fold (TCI); 1.70A {Rhipicephalus bursa} SCOP: g.9.1.3 g.9.1.3 PDB: 1zli_B 2jto_A 2k2x_A 3d4u_B 3lms_B 3osl_B 2k2y_A 2k2z_A
Probab=9.67 E-value=82 Score=20.99 Aligned_cols=10 Identities=30% Similarity=0.979 Sum_probs=6.8
Q ss_pred cccceeeeec
Q psy3063 58 RKSKCCCIYK 67 (110)
Q Consensus 58 kkSK~CCIyh 67 (110)
-+-+.||||-
T Consensus 65 g~~qKCCi~l 74 (75)
T 1zlh_B 65 GKGQKCCVWL 74 (75)
T ss_dssp CTTEEEECCC
T ss_pred CCCCeeEEee
Confidence 3457889883
No 3
>3aq2_A 6B protein; miRNA machineries, toxin, ADP-ribosylation fold; 1.65A {Agrobacterium vitis} PDB: 3aq3_A
Probab=9.20 E-value=83 Score=24.45 Aligned_cols=35 Identities=14% Similarity=0.262 Sum_probs=19.5
Q ss_pred CceeecCCccccccCCccccceeeeecCCCCCCCCCCCCCCccc
Q psy3063 41 KVVKWTENTIDNEHMNKRKSKCCCIYKKPKANFDESSSDSSDDE 84 (110)
Q Consensus 41 ~~V~W~edvVDNE~mgrkkSK~CCIyhKpr~~f~ESSse~sdde 84 (110)
-=|+..+++|+||..| |.+.+.++-|.-.+++|||
T Consensus 142 cF~r~G~r~i~gesy~---------fyaR~gny~ee~e~~~~~e 176 (207)
T 3aq2_A 142 LFIRIRTDVIRGQGYG---------WYARQGNYVEEGEDNEGIE 176 (207)
T ss_dssp TEEEEEEEEETTEEEE---------EEEESTTCCCCCC------
T ss_pred ceeecccceecCcccc---------eeeccCccccccccCcccc
Confidence 3488889999998654 4444447766555434443
No 4
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=9.13 E-value=69 Score=22.87 Aligned_cols=13 Identities=15% Similarity=0.562 Sum_probs=0.0
Q ss_pred ccccceeeeecCC
Q psy3063 57 KRKSKCCCIYKKP 69 (110)
Q Consensus 57 rkkSK~CCIyhKp 69 (110)
++++.|||+=|..
T Consensus 201 ~~~~~C~Cl~~~~ 213 (216)
T 4dkx_A 201 VSEGGCSCLEHHH 213 (216)
T ss_dssp -------------
T ss_pred CCCCCCceeCccc
Confidence 4567899987754
No 5
>1as5_A Conotoxin Y-PIIIE; neurotoxin, acetylcholine; HET: HYP; NMR {Conus purpurascens} SCOP: j.30.1.4 PDB: 1jlo_A*
Probab=8.64 E-value=1.1e+02 Score=16.58 Aligned_cols=16 Identities=38% Similarity=0.845 Sum_probs=11.8
Q ss_pred eeeeecCCCCCCCCCCC
Q psy3063 62 CCCIYKKPKANFDESSS 78 (110)
Q Consensus 62 ~CCIyhKpr~~f~ESSs 78 (110)
-||+|-+=| .|.--++
T Consensus 3 pcclyg~cr-~~pgc~~ 18 (26)
T 1as5_A 3 PCCLYGKCR-RYPGCSS 18 (26)
T ss_dssp CSSSTTCCC-CCTTCTT
T ss_pred Cceeccccc-cCCCcch
Confidence 499999999 8854443
No 6
>2gjh_A Designed protein; obligate symmetric HOMO-dimer, de novo protein; NMR {}
Probab=8.37 E-value=1.2e+02 Score=19.16 Aligned_cols=16 Identities=25% Similarity=0.447 Sum_probs=13.4
Q ss_pred CCCceeecCCcccccc
Q psy3063 39 TKKVVKWTENTIDNEH 54 (110)
Q Consensus 39 ~~~~V~W~edvVDNE~ 54 (110)
++-.|+|+-|+|--|+
T Consensus 33 ndinvtwdgdtvtveg 48 (62)
T 2gjh_A 33 NDINVTWDGDTVTVEG 48 (62)
T ss_dssp CSCEEEECSSCEEEEE
T ss_pred ccceeEEcCCEEEEEe
Confidence 5678999999998776
No 7
>2cr5_A Reproduction 8; UBX domain, D0H8S2298E protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.2
Probab=8.06 E-value=4.5e+02 Score=17.03 Aligned_cols=11 Identities=36% Similarity=0.389 Sum_probs=5.2
Q ss_pred CceEEEeecCC
Q psy3063 27 LGQVVVKLKKP 37 (110)
Q Consensus 27 ~~~l~Lrl~~~ 37 (110)
.++.+|+++-+
T Consensus 21 ~~~~~IqiRlp 31 (109)
T 2cr5_A 21 EEVVTVALRCP 31 (109)
T ss_dssp SSEEEEEEECT
T ss_pred CCcEEEEEECC
Confidence 44555555433
No 8
>1qyp_A RNA polymerase II; transcription, RPB9, Zn ribbon, hyperthermophilic, extremophIle; NMR {Thermococcus celer} SCOP: g.41.3.1
Probab=7.81 E-value=94 Score=18.20 Aligned_cols=26 Identities=35% Similarity=0.455 Sum_probs=15.8
Q ss_pred cccccCCCCchhhhhhcCCC-CCCCCCC
Q psy3063 82 DDECENCFGHVEAKKANRQT-KPDEPMA 108 (110)
Q Consensus 82 ddec~~c~gh~~~~~~~~~~-~~~~~~~ 108 (110)
+-.|..| ||.+.---..+. ..||+|.
T Consensus 15 ~~~Cp~C-g~~~~~~~q~Q~rsadep~T 41 (57)
T 1qyp_A 15 KITCPKC-GNDTAYWWEMQTRAGDEPST 41 (57)
T ss_dssp ECCCTTT-CCSEEEEEEECCSSSSCSSE
T ss_pred EeECCCC-CCCEEEEEEeecccCCCCCc
Confidence 3568888 455555555554 5677773
No 9
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=7.36 E-value=91 Score=20.66 Aligned_cols=8 Identities=38% Similarity=1.427 Sum_probs=0.0
Q ss_pred ccccceee
Q psy3063 57 KRKSKCCC 64 (110)
Q Consensus 57 rkkSK~CC 64 (110)
+++++|||
T Consensus 199 ~~~~~cc~ 206 (206)
T 2bcg_Y 199 TNTGGCCC 206 (206)
T ss_dssp --------
T ss_pred ccCCCCCC
Confidence 34455655
No 10
>3gv3_A CXCL12 protein; SDF, chemokine, disulfide bond, cytokine; 1.60A {Homo sapiens} SCOP: d.9.1.1 PDB: 2nwg_A* 2kee_A 2kec_A 2ked_A 3hp3_A 2j7z_A 1qg7_A 1sdf_A 2sdf_A 1a15_A 2kol_A 2k01_A 2k03_A* 2k04_A 2k05_A*
Probab=7.30 E-value=1e+02 Score=18.54 Aligned_cols=12 Identities=17% Similarity=0.597 Sum_probs=8.9
Q ss_pred cceeeeecCCCC
Q psy3063 60 SKCCCIYKKPKA 71 (110)
Q Consensus 60 SK~CCIyhKpr~ 71 (110)
..|||+|...+.
T Consensus 3 ~~Cc~~~~~~~I 14 (63)
T 3gv3_A 3 YRCPCRFFESHI 14 (63)
T ss_dssp TSCSCSSCBSCC
T ss_pred ceeeeeeeCCCC
Confidence 469999987653
Done!