Query psy3063
Match_columns 110
No_of_seqs 108 out of 212
Neff 3.3
Searched_HMMs 13730
Date Sat Aug 17 00:44:57 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3063.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/3063hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1fwoa_ g.3.16.1 (A:) Oryzain 28.5 11 0.0008 20.6 1.2 19 49-67 3-21 (35)
2 d1j8ca_ d.15.1.1 (A:) Ubiquiti 22.3 58 0.0042 19.5 4.1 37 1-37 1-40 (103)
3 d2ngra_ c.37.1.8 (A:) CDC42 {H 16.1 20 0.0014 22.8 0.7 11 55-65 180-190 (191)
4 d2cr5a1 d.15.1.2 (A:8-103) UBX 9.9 1.6E+02 0.012 16.9 3.6 13 25-37 12-24 (96)
5 d2nxyb2 b.1.1.3 (B:1098-1181) 6.7 1.8E+02 0.013 15.6 2.7 22 27-48 14-36 (84)
6 d1c1yb_ d.15.1.5 (B:) c-Raf1 R 5.7 1.4E+02 0.01 17.8 1.8 15 8-22 9-23 (77)
7 d1nbqa1 b.1.1.1 (A:25-129) Jun 5.3 2.4E+02 0.017 15.1 2.7 33 15-47 7-40 (105)
8 d1x7fa1 b.62.1.2 (A:245-361) O 4.9 76 0.0055 20.5 0.1 14 47-60 62-75 (117)
9 d1q5wa_ g.41.11.1 (A:) Npl4 {R 4.7 1.2E+02 0.0084 15.8 0.8 9 81-89 19-27 (31)
10 d1vcaa2 b.1.1.4 (A:1-90) Vascu 3.1 3.1E+02 0.022 14.6 1.8 21 27-47 16-37 (90)
No 1
>d1fwoa_ g.3.16.1 (A:) Oryzain beta chain {Rice (Oryza sativa) [TaxId: 4530]}
Probab=28.52 E-value=11 Score=20.62 Aligned_cols=19 Identities=16% Similarity=0.323 Sum_probs=12.3
Q ss_pred ccccccCCccccceeeeec
Q psy3063 49 TIDNEHMNKRKSKCCCIYK 67 (110)
Q Consensus 49 vVDNE~mgrkkSK~CCIyh 67 (110)
|-|+-.-=--.+-|||||.
T Consensus 3 vCD~~~sCp~~~TCCC~~e 21 (35)
T d1fwoa_ 3 VCDDNFSCPAGSTCSSAFG 21 (35)
T ss_dssp CSSSSCCCCSSSEECCCCC
T ss_pred cccCcccCCCCCcEEEEec
Confidence 3444444445678999995
No 2
>d1j8ca_ d.15.1.1 (A:) Ubiquitin-like N-terminal domain of PLIC-2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=22.27 E-value=58 Score=19.48 Aligned_cols=37 Identities=19% Similarity=0.243 Sum_probs=17.7
Q ss_pred CCccccC---CCCCceEEeCCCCCCcCCCCceEEEeecCC
Q psy3063 1 MSRTHEI---PTSSTTVTISPEPETETDSLGQVVVKLKKP 37 (110)
Q Consensus 1 msr~~~~---p~sS~t~t~~~~p~~~~~~~~~l~Lrl~~~ 37 (110)
|++.... |.+|+.....+.+......+..++|++...
T Consensus 1 m~~~~~ss~pp~~s~~~~~~~~~~~~~~~~~~i~V~Vk~~ 40 (103)
T d1j8ca_ 1 MAENGESSGPPRPSRGPAAAQGSAAAPAEPKIIKVTVKTP 40 (103)
T ss_dssp CCCSCCCCCCCSSCCCSCCCCCSSSCCCCCCCEEEEEECS
T ss_pred CCccCccCCCCCCCCCCCCCCCCCCCCCCCCeEEEEEECC
Confidence 4554444 333333222223233344556788888654
No 3
>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}
Probab=16.14 E-value=20 Score=22.78 Aligned_cols=11 Identities=27% Similarity=0.630 Sum_probs=8.1
Q ss_pred CCccccceeee
Q psy3063 55 MNKRKSKCCCI 65 (110)
Q Consensus 55 mgrkkSK~CCI 65 (110)
...|++++|||
T Consensus 180 ~~~k~~~~C~i 190 (191)
T d2ngra_ 180 PEPKKSRRCVL 190 (191)
T ss_dssp CSTTCCCSCCC
T ss_pred cCCCCCCCCeE
Confidence 45677888887
No 4
>d2cr5a1 d.15.1.2 (A:8-103) UBX domain-containing protein 6 (Reproduction 8) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=9.86 E-value=1.6e+02 Score=16.91 Aligned_cols=13 Identities=31% Similarity=0.358 Sum_probs=6.5
Q ss_pred CCCceEEEeecCC
Q psy3063 25 DSLGQVVVKLKKP 37 (110)
Q Consensus 25 ~~~~~l~Lrl~~~ 37 (110)
...++++|+++-+
T Consensus 12 ~~~~~~~i~iRlP 24 (96)
T d2cr5a1 12 TAEEVVTVALRCP 24 (96)
T ss_dssp SCSSEEEEEEECT
T ss_pred CCCCeEEEEEECC
Confidence 3445555555533
No 5
>d2nxyb2 b.1.1.3 (B:1098-1181) CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.70 E-value=1.8e+02 Score=15.61 Aligned_cols=22 Identities=14% Similarity=0.197 Sum_probs=13.4
Q ss_pred CceEEEeec-CCCCCCceeecCC
Q psy3063 27 LGQVVVKLK-KPETKKVVKWTEN 48 (110)
Q Consensus 27 ~~~l~Lrl~-~~~~~~~V~W~ed 48 (110)
-..|+|.-. ...+...|+|..+
T Consensus 14 G~~~~L~C~~~g~p~P~i~W~~~ 36 (84)
T d2nxyb2 14 GQSLTLTLESPPGSSPSVQCRSP 36 (84)
T ss_dssp TCCEEEEEECCTTCCCEEEEECT
T ss_pred CCeEEEEEEeEcCCchheEEEee
Confidence 344555543 2346788999864
No 6
>d1c1yb_ d.15.1.5 (B:) c-Raf1 RBD {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.66 E-value=1.4e+02 Score=17.79 Aligned_cols=15 Identities=20% Similarity=0.184 Sum_probs=10.6
Q ss_pred CCCCceEEeCCCCCC
Q psy3063 8 PTSSTTVTISPEPET 22 (110)
Q Consensus 8 p~sS~t~t~~~~p~~ 22 (110)
|..++|.+..-|-.+
T Consensus 9 Pngq~T~V~vrpG~t 23 (77)
T d1c1yb_ 9 PNKQRTVVNVRNGMS 23 (77)
T ss_dssp TTTEEEEEECCTTCB
T ss_pred CCCCeEEEEecCCCC
Confidence 777877776666655
No 7
>d1nbqa1 b.1.1.1 (A:25-129) Junction adhesion molecule, JAM, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.34 E-value=2.4e+02 Score=15.13 Aligned_cols=33 Identities=21% Similarity=0.224 Sum_probs=16.0
Q ss_pred EeCCCCCCcCCCCceEEEeec-CCCCCCceeecC
Q psy3063 15 TISPEPETETDSLGQVVVKLK-KPETKKVVKWTE 47 (110)
Q Consensus 15 t~~~~p~~~~~~~~~l~Lrl~-~~~~~~~V~W~e 47 (110)
+.+.+|......-..+.|.-. ...+...|.|.-
T Consensus 7 V~~~~~~v~v~~g~~v~L~C~~~g~p~p~v~W~~ 40 (105)
T d1nbqa1 7 VHSSEPEVRIPENNPVKLSCAYSGFSSPRVEWKF 40 (105)
T ss_dssp EECSCSBCCEETTCCCEEECEEESCSSEEEEEEE
T ss_pred EECCCCeEEEeCCCeEEEEEEeCCCCCCeeEEEe
Confidence 333444443333444555432 123456799964
No 8
>d1x7fa1 b.62.1.2 (A:245-361) Outer surface protein, C-terminal domain {Bacillus cereus [TaxId: 1396]}
Probab=4.86 E-value=76 Score=20.46 Aligned_cols=14 Identities=29% Similarity=0.361 Sum_probs=10.6
Q ss_pred CCccccccCCcccc
Q psy3063 47 ENTIDNEHMNKRKS 60 (110)
Q Consensus 47 edvVDNE~mgrkkS 60 (110)
.=||||++.||-+-
T Consensus 62 dItIdN~~ygrY~G 75 (117)
T d1x7fa1 62 QVVIGNNSFGKYKG 75 (117)
T ss_dssp EEEEECGGGGGGTT
T ss_pred eEEEecCCcccccc
Confidence 34789999998654
No 9
>d1q5wa_ g.41.11.1 (A:) Npl4 {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=4.67 E-value=1.2e+02 Score=15.80 Aligned_cols=9 Identities=33% Similarity=0.833 Sum_probs=5.8
Q ss_pred CcccccCCC
Q psy3063 81 SDDECENCF 89 (110)
Q Consensus 81 sddec~~c~ 89 (110)
..|.|+.|.
T Consensus 19 gtd~CeMC~ 27 (31)
T d1q5wa_ 19 GTGHCEMCS 27 (31)
T ss_dssp TCSBCTTTC
T ss_pred CCCcchhhc
Confidence 456777774
No 10
>d1vcaa2 b.1.1.4 (A:1-90) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.11 E-value=3.1e+02 Score=14.56 Aligned_cols=21 Identities=10% Similarity=0.128 Sum_probs=11.1
Q ss_pred CceEEEeec-CCCCCCceeecC
Q psy3063 27 LGQVVVKLK-KPETKKVVKWTE 47 (110)
Q Consensus 27 ~~~l~Lrl~-~~~~~~~V~W~e 47 (110)
-..|+|.-. ...+...|.|.-
T Consensus 16 G~~v~l~C~~~g~p~p~i~W~~ 37 (90)
T d1vcaa2 16 GDSVSLTCSTTGCESPFFSWRT 37 (90)
T ss_dssp TSCEEEEEEEESCSSCEEEEEE
T ss_pred CCEEEEEEeccCCCCceEEEEe
Confidence 344555432 233457799953
Done!