RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy3063
         (110 letters)



>gnl|CDD|219428 pfam07491, PPI_Ypi1, Protein phosphatase inhibitor.  These
          proteins include Ypi1, , a novel Saccharomyces
          cerevisiae type 1 protein phosphatase inhibitor and
          ppp1r11/hcgv, annotated as having protein phosphatase
          inhibitor activity.
          Length = 58

 Score = 71.9 bits (177), Expect = 2e-18
 Identities = 30/49 (61%), Positives = 38/49 (77%), Gaps = 1/49 (2%)

Query: 35 KKPETKKVVKWTENTIDNEHMNKRKSKCCCIYKKPKANFDESSSDSSDD 83
          K  +TK+ V+WTE+ +DNEHMNK+KSK CCI+ KP+  FDESSSDS   
Sbjct: 9  KSKKTKRRVRWTEDVVDNEHMNKKKSKICCIFHKPR-PFDESSSDSDSS 56


>gnl|CDD|235594 PRK05761, PRK05761, DNA polymerase I; Reviewed.
          Length = 787

 Score = 28.1 bits (63), Expect = 0.96
 Identities = 13/24 (54%), Positives = 16/24 (66%)

Query: 26 SLGQVVVKLKKPETKKVVKWTENT 49
           LG+ VVKL  PET K+ KW + T
Sbjct: 29 KLGKAVVKLYDPETGKIYKWYDRT 52


>gnl|CDD|215187 PLN02328, PLN02328, lysine-specific histone demethylase 1
          homolog.
          Length = 808

 Score = 28.0 bits (62), Expect = 1.1
 Identities = 21/77 (27%), Positives = 32/77 (41%), Gaps = 7/77 (9%)

Query: 15 TISPEPETETDSLGQVVVKLKKPETKKVVKWT--ENTIDNEHMNKRK-----SKCCCIYK 67
          T + EPE   D++  VV +   PET   +  +  E  I+N+  N  +     ++      
Sbjct: 3  TETKEPEDPADNVNDVVSEASSPETDLSLSPSQSEQNIENDGQNSPETQSPLTELQPSPL 62

Query: 68 KPKANFDESSSDSSDDE 84
           P    D   SDS  DE
Sbjct: 63 PPNTTLDAPVSDSQGDE 79


>gnl|CDD|147625 pfam05550, Peptidase_C53, Pestivirus Npro endopeptidase C53.
           Unique to pestiviruses, the N-terminal protein encoded
           by the bovine viral diarrhoea virus genome is a cysteine
           protease (Npro) responsible for a self-cleavage that
           releases the N terminus of the core protein. This unique
           protease is dispensable for viral replication, and its
           coding region can be replaced by a ubiquitin gene
           directly fused in frame to the core.
          Length = 168

 Score = 26.2 bits (58), Expect = 3.7
 Identities = 9/24 (37%), Positives = 15/24 (62%)

Query: 28  GQVVVKLKKPETKKVVKWTENTID 51
           G +++KL      +V+KW  NT+D
Sbjct: 137 GCILLKLASRSEPRVLKWVHNTLD 160


>gnl|CDD|227031 COG4687, COG4687, Uncharacterized protein conserved in bacteria
           [Function unknown].
          Length = 122

 Score = 25.5 bits (56), Expect = 5.4
 Identities = 11/50 (22%), Positives = 20/50 (40%), Gaps = 2/50 (4%)

Query: 6   EIPTSSTTVTISPEPETETDSLGQVVVKLKKPETKKVVKWTENTIDNEHM 55
           E+  S +      +    TD+ G+V    K     K++K     + NE +
Sbjct: 55  EVDVSVSLKKWGRQFSIFTDTQGKVRFASKDS--GKILKKIREYVGNEKV 102


>gnl|CDD|220297 pfam09581, Spore_III_AF, Stage III sporulation protein AF
           (Spore_III_AF).  This family represents the stage III
           sporulation protein AF (Spore_III_AF) of the bacterial
           endospore formation program, which exists in some but
           not all members of the Firmicutes (formerly called
           low-GC Gram-positives). The C-terminal region of these
           proteins is poorly conserved.
          Length = 185

 Score = 24.9 bits (55), Expect = 9.5
 Identities = 11/57 (19%), Positives = 23/57 (40%)

Query: 5   HEIPTSSTTVTISPEPETETDSLGQVVVKLKKPETKKVVKWTENTIDNEHMNKRKSK 61
           + +      V I  + E+    + +V V LK+   +K     E  + +   +K K +
Sbjct: 100 YGVKVKDVEVEIDEDLESNNFDIKEVNVTLKEESKEKQKSKVEPVVIDTQTSKPKEE 156


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.306    0.121    0.349 

Gapped
Lambda     K      H
   0.267   0.0669    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 4,931,502
Number of extensions: 367094
Number of successful extensions: 284
Number of sequences better than 10.0: 1
Number of HSP's gapped: 282
Number of HSP's successfully gapped: 16
Length of query: 110
Length of database: 10,937,602
Length adjustment: 74
Effective length of query: 36
Effective length of database: 7,655,406
Effective search space: 275594616
Effective search space used: 275594616
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 53 (24.3 bits)