BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy3064
         (61 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q86XN8|MEX3D_HUMAN RNA-binding protein MEX3D OS=Homo sapiens GN=MEX3D PE=1 SV=3
          Length = 651

 Score = 55.1 bits (131), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 25/27 (92%), Positives = 25/27 (92%)

Query: 32  NKKSANMTECVPVPSSEHVAEIVGRQG 58
            KKS NMTECVPVPSSEHVAEIVGRQG
Sbjct: 173 RKKSVNMTECVPVPSSEHVAEIVGRQG 199


>sp|Q3UE17|MEX3D_MOUSE RNA-binding protein MEX3D OS=Mus musculus GN=Mex3d PE=2 SV=2
          Length = 643

 Score = 55.1 bits (131), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 25/27 (92%), Positives = 25/27 (92%)

Query: 32  NKKSANMTECVPVPSSEHVAEIVGRQG 58
            KKS NMTECVPVPSSEHVAEIVGRQG
Sbjct: 154 RKKSVNMTECVPVPSSEHVAEIVGRQG 180


>sp|Q69Z36|MEX3B_MOUSE RNA-binding protein MEX3B OS=Mus musculus GN=Mex3b PE=2 SV=2
          Length = 601

 Score = 54.7 bits (130), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 25/27 (92%), Positives = 25/27 (92%)

Query: 32 NKKSANMTECVPVPSSEHVAEIVGRQG 58
           KKS NMTECVPVPSSEHVAEIVGRQG
Sbjct: 67 RKKSVNMTECVPVPSSEHVAEIVGRQG 93


>sp|Q6ZN04|MEX3B_HUMAN RNA-binding protein MEX3B OS=Homo sapiens GN=MEX3B PE=1 SV=1
          Length = 569

 Score = 54.7 bits (130), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 25/27 (92%), Positives = 25/27 (92%)

Query: 32 NKKSANMTECVPVPSSEHVAEIVGRQG 58
           KKS NMTECVPVPSSEHVAEIVGRQG
Sbjct: 60 RKKSVNMTECVPVPSSEHVAEIVGRQG 86


>sp|Q05A36|MEX3C_MOUSE RNA-binding E3 ubiquitin-protein ligase MEX3C OS=Mus musculus
           GN=Mex3c PE=2 SV=2
          Length = 652

 Score = 52.8 bits (125), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 27/34 (79%), Positives = 28/34 (82%), Gaps = 1/34 (2%)

Query: 25  ESAEDLRNKKSANMTECVPVPSSEHVAEIVGRQG 58
           E A  LR +KS N TECVPVPSSEHVAEIVGRQG
Sbjct: 213 EQAALLR-RKSVNTTECVPVPSSEHVAEIVGRQG 245


>sp|Q5U5Q3|MEX3C_HUMAN RNA-binding E3 ubiquitin-protein ligase MEX3C OS=Homo sapiens
           GN=MEX3C PE=1 SV=3
          Length = 659

 Score = 52.4 bits (124), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 27/34 (79%), Positives = 28/34 (82%), Gaps = 1/34 (2%)

Query: 25  ESAEDLRNKKSANMTECVPVPSSEHVAEIVGRQG 58
           E A  LR +KS N TECVPVPSSEHVAEIVGRQG
Sbjct: 220 EQAALLR-RKSVNTTECVPVPSSEHVAEIVGRQG 252


>sp|A1L3F4|MEX3B_XENLA RNA-binding protein MEX3B OS=Xenopus laevis GN=mex3b PE=2 SV=1
          Length = 507

 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 24/26 (92%), Positives = 24/26 (92%)

Query: 33 KKSANMTECVPVPSSEHVAEIVGRQG 58
          KKS NMTECV VPSSEHVAEIVGRQG
Sbjct: 54 KKSINMTECVQVPSSEHVAEIVGRQG 79


>sp|A1L020|MEX3A_HUMAN RNA-binding protein MEX3A OS=Homo sapiens GN=MEX3A PE=1 SV=1
          Length = 520

 Score = 50.8 bits (120), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 24/30 (80%), Positives = 27/30 (90%)

Query: 29  DLRNKKSANMTECVPVPSSEHVAEIVGRQG 58
           +LR K S+N TECVPVP+SEHVAEIVGRQG
Sbjct: 123 ELRLKGSSNTTECVPVPTSEHVAEIVGRQG 152


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.309    0.128    0.366 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,670,004
Number of Sequences: 539616
Number of extensions: 745027
Number of successful extensions: 1326
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1318
Number of HSP's gapped (non-prelim): 8
length of query: 61
length of database: 191,569,459
effective HSP length: 34
effective length of query: 27
effective length of database: 173,222,515
effective search space: 4677007905
effective search space used: 4677007905
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 55 (25.8 bits)