Query psy3064
Match_columns 61
No_of_seqs 34 out of 36
Neff 2.1
Searched_HMMs 29240
Date Sat Aug 17 00:45:48 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3064.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/3064hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2dgr_A Ring finger and KH doma 76.8 1 3.5E-05 26.3 1.3 24 37-61 9-32 (83)
2 2axy_A Poly(RC)-binding protei 44.4 5.5 0.00019 22.0 0.3 24 36-60 3-26 (73)
3 2p2r_A Poly(RC)-binding protei 44.4 5.2 0.00018 21.9 0.2 25 35-60 2-26 (76)
4 2ctl_A Vigilin; K homology typ 30.2 14 0.00049 21.6 0.5 24 36-60 15-38 (97)
5 2opv_A KHSRP protein; KH domai 21.0 37 0.0012 18.9 1.1 22 38-60 14-35 (85)
6 1wvn_A Poly(RC)-binding protei 19.9 29 0.001 19.1 0.5 23 37-60 5-27 (82)
7 1dtj_A RNA-binding neurooncolo 17.4 36 0.0012 18.2 0.5 22 38-60 3-24 (76)
8 1ec6_A RNA-binding protein NOV 14.2 41 0.0014 18.7 0.2 22 38-60 3-24 (87)
9 2jzx_A Poly(RC)-binding protei 12.4 56 0.0019 19.4 0.4 24 36-60 3-26 (160)
10 2ctf_A Vigilin; K homology typ 12.3 88 0.003 18.4 1.3 22 38-60 27-48 (102)
No 1
>2dgr_A Ring finger and KH domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=76.82 E-value=1 Score=26.31 Aligned_cols=24 Identities=33% Similarity=0.390 Sum_probs=20.3
Q ss_pred eceeeeeeCCchHHHHHHhhcCcCC
Q psy3064 37 NMTECVPVPSSEHVAEIVGRQGFGM 61 (61)
Q Consensus 37 n~te~VpVPSsehvaEivgrqGCK~ 61 (61)
..++.+.||. +++..|.|+.|++|
T Consensus 9 ~~~~~i~VP~-~~vG~IIGkgG~tI 32 (83)
T 2dgr_A 9 QTTIQVRVPY-RVVGLVVGPKGATI 32 (83)
T ss_dssp SEEEEEECCH-HHHHHHHTTTTSSH
T ss_pred ceEEEEEeCh-HHeeeeECCCchHH
Confidence 3577888996 89999999999874
No 2
>2axy_A Poly(RC)-binding protein 2; protein-DNA complex, DNA binding protein-DNA complex; 1.70A {Homo sapiens} SCOP: d.51.1.1 PDB: 2pqu_A 2py9_A 1ztg_A 3vke_A*
Probab=44.37 E-value=5.5 Score=21.99 Aligned_cols=24 Identities=21% Similarity=0.392 Sum_probs=18.0
Q ss_pred eeceeeeeeCCchHHHHHHhhcCcC
Q psy3064 36 ANMTECVPVPSSEHVAEIVGRQGFG 60 (61)
Q Consensus 36 ~n~te~VpVPSsehvaEivgrqGCK 60 (61)
..++..+.||. +.+..+.|+.|+.
T Consensus 3 ~~~~~~i~ip~-~~ig~iIGkgG~~ 26 (73)
T 2axy_A 3 VTLTIRLLMHG-KEVGSIIGKKGES 26 (73)
T ss_dssp CCEEEEEEEEH-HHHHHHHCGGGHH
T ss_pred ceEEEEEEECh-hHeeeEECCCCHH
Confidence 34566777776 6888899998864
No 3
>2p2r_A Poly(RC)-binding protein 2; protein-DNA complex, RNA and DNA binding protein/DNA complex; 1.60A {Homo sapiens}
Probab=44.36 E-value=5.2 Score=21.95 Aligned_cols=25 Identities=24% Similarity=0.519 Sum_probs=18.7
Q ss_pred ceeceeeeeeCCchHHHHHHhhcCcC
Q psy3064 35 SANMTECVPVPSSEHVAEIVGRQGFG 60 (61)
Q Consensus 35 s~n~te~VpVPSsehvaEivgrqGCK 60 (61)
+..+++.+.||. +.+..+.|+.|+.
T Consensus 2 ~~~~~~~i~Ip~-~~vg~iIGkgG~~ 26 (76)
T 2p2r_A 2 AQTTSHELTIPN-DLIGCIIGRQGAK 26 (76)
T ss_dssp -CCEEEEEEEEH-HHHHHHHCGGGHH
T ss_pred CCceEEEEEECh-HHcceEECCCChH
Confidence 356777888887 4788899998864
No 4
>2ctl_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=30.24 E-value=14 Score=21.55 Aligned_cols=24 Identities=25% Similarity=0.353 Sum_probs=18.7
Q ss_pred eeceeeeeeCCchHHHHHHhhcCcC
Q psy3064 36 ANMTECVPVPSSEHVAEIVGRQGFG 60 (61)
Q Consensus 36 ~n~te~VpVPSsehvaEivgrqGCK 60 (61)
.+.++.+.||. +++..|.|+.|..
T Consensus 15 ~~~~~~i~Ip~-~~ig~IIGkgG~~ 38 (97)
T 2ctl_A 15 RSFKLSVTVDP-KYHPKIIGRKGAV 38 (97)
T ss_dssp TTCEEEEECCT-TTHHHHSCSSSCH
T ss_pred cceeEEEEECH-HHhhhcCCCCchh
Confidence 34688899998 6778899998853
No 5
>2opv_A KHSRP protein; KH domain, RNA binding protein, KSRP; NMR {Homo sapiens}
Probab=21.01 E-value=37 Score=18.91 Aligned_cols=22 Identities=14% Similarity=0.369 Sum_probs=17.3
Q ss_pred ceeeeeeCCchHHHHHHhhcCcC
Q psy3064 38 MTECVPVPSSEHVAEIVGRQGFG 60 (61)
Q Consensus 38 ~te~VpVPSsehvaEivgrqGCK 60 (61)
.++.+.||. +.+..+.|+.|..
T Consensus 14 ~~~~i~Ip~-~~ig~IIGkgG~~ 35 (85)
T 2opv_A 14 TVQEIMIPA-GKAGLVIGKGGET 35 (85)
T ss_dssp EEEEEEECT-TTHHHHHTTTTHH
T ss_pred EEEEEEeCh-hheeeeECCCCHH
Confidence 467888886 6888999998853
No 6
>1wvn_A Poly(RC)-binding protein 1; KH domain, RNA binding domain, RNA binding protein; 2.10A {Homo sapiens} SCOP: d.51.1.1
Probab=19.92 E-value=29 Score=19.12 Aligned_cols=23 Identities=30% Similarity=0.564 Sum_probs=16.7
Q ss_pred eceeeeeeCCchHHHHHHhhcCcC
Q psy3064 37 NMTECVPVPSSEHVAEIVGRQGFG 60 (61)
Q Consensus 37 n~te~VpVPSsehvaEivgrqGCK 60 (61)
.+++.+.||.. .+..+.|+.|..
T Consensus 5 ~~~~~i~Ip~~-~vg~IIGkgG~~ 27 (82)
T 1wvn_A 5 QTTHELTIPNN-LIGCIIGRQGAN 27 (82)
T ss_dssp CEEEEEEEEGG-GHHHHHCGGGHH
T ss_pred cEEEEEEEchH-hccceeCCCchh
Confidence 35667778764 678888988864
No 7
>1dtj_A RNA-binding neurooncological ventral antigen 2; KH domain, alpha-beta fold RNA-binding motif, immune system; 2.00A {Homo sapiens} SCOP: d.51.1.1 PDB: 1dt4_A
Probab=17.43 E-value=36 Score=18.21 Aligned_cols=22 Identities=27% Similarity=0.366 Sum_probs=15.5
Q ss_pred ceeeeeeCCchHHHHHHhhcCcC
Q psy3064 38 MTECVPVPSSEHVAEIVGRQGFG 60 (61)
Q Consensus 38 ~te~VpVPSsehvaEivgrqGCK 60 (61)
.+..+.||. +.+..+.|+.|..
T Consensus 3 ~~~~i~Ip~-~~vg~IIGkgG~~ 24 (76)
T 1dtj_A 3 ELVEMAVPE-NLVGAILGKGGKT 24 (76)
T ss_dssp EEEEEEEET-TTHHHHHCSTTHH
T ss_pred eEEEEEECh-HHcceEECCCchH
Confidence 355677776 4678888888853
No 8
>1ec6_A RNA-binding protein NOVA-2; KH domain, alpha-beta fold, RNA-binding motif, protein/RNA structure, RNA binding protein/RNA complex; 2.40A {Homo sapiens} SCOP: d.51.1.1
Probab=14.18 E-value=41 Score=18.71 Aligned_cols=22 Identities=27% Similarity=0.389 Sum_probs=15.9
Q ss_pred ceeeeeeCCchHHHHHHhhcCcC
Q psy3064 38 MTECVPVPSSEHVAEIVGRQGFG 60 (61)
Q Consensus 38 ~te~VpVPSsehvaEivgrqGCK 60 (61)
.+..+.||. +.+..|.|+.|..
T Consensus 3 ~t~~i~IP~-~~vG~IIGkgG~~ 24 (87)
T 1ec6_A 3 ELVEIAVPE-NLVGAILGKGGKT 24 (87)
T ss_dssp SEEEEEEEH-HHHHHHHCGGGHH
T ss_pred eEEEEEECh-HHcCeeECCCcHh
Confidence 456677776 5788888988753
No 9
>2jzx_A Poly(RC)-binding protein 2; PCBP2, KH domains, RNA binding, DNA-binding, nucleus, phosph ribonucleoprotein, RNA-binding, RNA binding protein; NMR {Homo sapiens}
Probab=12.43 E-value=56 Score=19.43 Aligned_cols=24 Identities=21% Similarity=0.392 Sum_probs=17.4
Q ss_pred eeceeeeeeCCchHHHHHHhhcCcC
Q psy3064 36 ANMTECVPVPSSEHVAEIVGRQGFG 60 (61)
Q Consensus 36 ~n~te~VpVPSsehvaEivgrqGCK 60 (61)
.-++..+.||. +++..+.|+.|..
T Consensus 3 ~~~~~~~~vp~-~~~g~iIGkgG~~ 26 (160)
T 2jzx_A 3 VTLTIRLLMHG-KEVGSIIGKKGES 26 (160)
T ss_dssp CEEEEEEEEEH-HHHHHHHCGGGHH
T ss_pred ccEEEEEEEch-hheeeeECCCcHH
Confidence 34566777776 6788889988853
No 10
>2ctf_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=12.33 E-value=88 Score=18.39 Aligned_cols=22 Identities=32% Similarity=0.471 Sum_probs=17.4
Q ss_pred ceeeeeeCCchHHHHHHhhcCcC
Q psy3064 38 MTECVPVPSSEHVAEIVGRQGFG 60 (61)
Q Consensus 38 ~te~VpVPSsehvaEivgrqGCK 60 (61)
+++.+.||+.-| .-|.|+.|..
T Consensus 27 ~t~~i~vp~~~h-~~IIG~~G~~ 48 (102)
T 2ctf_A 27 TVSSVAAPSWLH-RFIIGKKGQN 48 (102)
T ss_dssp EEEEEECCSTTH-HHHHTTTTCH
T ss_pred EEEEEEeCHHHH-hhhcCCCCcc
Confidence 678899997655 5699999875
Done!