RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy3064
         (61 letters)



>gnl|CDD|193555 cd05680, M20_dipept_like_3, Uncharacterized M20 Dipeptidases.
           Peptidase M20 family, unknown dipeptidase-like subfamily
           3 (inferred by homology to be dipeptidases). M20
           dipeptidases include a large variety of bacterial
           enzymes including cytosolic nonspecific dipeptidase
           (CNDP), Xaa-methyl-His dipeptidase (anserinase),and
           canosinase. These dipeptidases have been shown to act on
           a wide range of dipeptides, but not larger peptides. For
           example, anserinase mainly catalyzes the hydrolysis of
           N-alpha-acetylhistidine while carnosinase degrades
           beta-alanyl-L-histidine.
          Length = 437

 Score = 27.9 bits (63), Expect = 0.23
 Identities = 9/17 (52%), Positives = 12/17 (70%)

Query: 15  GSPHLPSFLQESAEDLR 31
           GSP+L  FL+E  E L+
Sbjct: 141 GSPNLEPFLEEHRELLK 157


>gnl|CDD|236379 PRK09104, PRK09104, hypothetical protein; Validated.
          Length = 464

 Score = 27.9 bits (63), Expect = 0.23
 Identities = 9/18 (50%), Positives = 14/18 (77%)

Query: 14  NGSPHLPSFLQESAEDLR 31
           +GSP L  FL+ +AE+L+
Sbjct: 164 SGSPSLVPFLEANAEELK 181


>gnl|CDD|169276 PRK08201, PRK08201, hypothetical protein; Provisional.
          Length = 456

 Score = 25.5 bits (56), Expect = 1.9
 Identities = 8/17 (47%), Positives = 12/17 (70%)

Query: 15  GSPHLPSFLQESAEDLR 31
           GSP+L SF++E  + L 
Sbjct: 157 GSPNLDSFVEEEKDKLA 173


>gnl|CDD|180749 PRK06920, dnaE, DNA polymerase III DnaE; Reviewed.
          Length = 1107

 Score = 25.1 bits (55), Expect = 2.2
 Identities = 11/39 (28%), Positives = 18/39 (46%)

Query: 16  SPHLPSFLQESAEDLRNKKSANMTECVPVPSSEHVAEIV 54
           S  L  F+Q +    R  + A   E +P  +S H A ++
Sbjct: 460 SQSLREFIQGNLLHERVFEIAKRVEGLPRHTSIHAAGVI 498


>gnl|CDD|236800 PRK10935, PRK10935, nitrate/nitrite sensor protein NarQ;
           Provisional.
          Length = 565

 Score = 25.2 bits (56), Expect = 2.2
 Identities = 9/23 (39%), Positives = 14/23 (60%)

Query: 17  PHLPSFLQESAEDLRNKKSANMT 39
            +L S L+E  + LRN+  A +T
Sbjct: 432 ANLGSALEEMLDQLRNQTDAKIT 454


>gnl|CDD|222996 PHA03131, PHA03131, dUTPase; Provisional.
          Length = 286

 Score = 25.0 bits (55), Expect = 2.3
 Identities = 8/21 (38%), Positives = 8/21 (38%)

Query: 41  CVPVPSSEHVAEIVGRQGFGM 61
           C P  S   V  I GR G   
Sbjct: 158 CCPPISPHFVPVIFGRSGLAS 178


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.309    0.128    0.366 

Gapped
Lambda     K      H
   0.267   0.0826    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 2,932,635
Number of extensions: 189408
Number of successful extensions: 114
Number of sequences better than 10.0: 1
Number of HSP's gapped: 114
Number of HSP's successfully gapped: 6
Length of query: 61
Length of database: 10,937,602
Length adjustment: 32
Effective length of query: 29
Effective length of database: 9,518,274
Effective search space: 276029946
Effective search space used: 276029946
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 53 (24.0 bits)