RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy3064
         (61 letters)



>2ctl_A Vigilin; K homology type I domain, RNA-binding, cell sterol
          metabolism, beta-alpha-alpha-beta-BETA-alpha structure,
          structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
          d.51.1.1
          Length = 97

 Score = 27.9 bits (62), Expect = 0.088
 Identities = 7/33 (21%), Positives = 17/33 (51%), Gaps = 1/33 (3%)

Query: 26 SAEDLRNKKSANMTECVPVPSSEHVAEIVGRQG 58
          S+ +  ++   +    V V   ++  +I+GR+G
Sbjct: 5  SSGEQEDRALRSFKLSVTVDP-KYHPKIIGRKG 36


>2pok_A Peptidase, M20/M25/M40 family; M20 family peptidase, metallo
           protein, MCSG, structural GENO PSI-2, protein structure
           initiative; HET: BGC; 1.90A {Streptococcus pneumoniae}
          Length = 481

 Score = 27.2 bits (61), Expect = 0.22
 Identities = 6/18 (33%), Positives = 10/18 (55%)

Query: 15  GSPHLPSFLQESAEDLRN 32
            S  L  +L++ A+ LR 
Sbjct: 184 ASTDLDKYLEKHADKLRG 201


>3dlj_A Beta-Ala-His dipeptidase; CNDP1, carnosine dipeptidase 1,
           structural genomics, structu genomics consortium, SGC,
           metallopeptidase M20 family; 2.26A {Homo sapiens}
          Length = 485

 Score = 26.5 bits (59), Expect = 0.40
 Identities = 3/19 (15%), Positives = 8/19 (42%)

Query: 15  GSPHLPSFLQESAEDLRNK 33
           GS  L   +++  +   + 
Sbjct: 180 GSVALEELVEKEKDRFFSG 198


>2zog_A Cytosolic non-specific dipeptidase; metallopeptidase,
           protein-inhibitor complex, CNDP2, CNDP DIP 2, bestatin,
           L-carnosine, carnosinase, Zn; HET: BES; 1.70A {Mus
           musculus} PDB: 2zof_A*
          Length = 479

 Score = 26.1 bits (58), Expect = 0.67
 Identities = 3/19 (15%), Positives = 5/19 (26%)

Query: 15  GSPHLPSFLQESAEDLRNK 33
           GS  L   +    +     
Sbjct: 173 GSEGLDELIFAQKDKFFKD 191


>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB,
           proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR
           binding; 3.65A {Bacillus subtilis}
          Length = 468

 Score = 25.6 bits (57), Expect = 1.0
 Identities = 6/32 (18%), Positives = 13/32 (40%)

Query: 23  LQESAEDLRNKKSANMTECVPVPSSEHVAEIV 54
           L+E  ED +        +     + + +A +V
Sbjct: 432 LREQVEDTKKSWKEKQGQENSEVTVDDIAMVV 463


>3pfe_A Succinyl-diaminopimelate desuccinylase; metal binding, merops M20
           familiy, phosphorylase/hydrolase-L structural genomics;
           HET: MSE; 1.50A {Legionella pneumophila subsp}
          Length = 472

 Score = 25.0 bits (55), Expect = 1.7
 Identities = 5/18 (27%), Positives = 9/18 (50%)

Query: 15  GSPHLPSFLQESAEDLRN 32
           GS  LP +++   E +  
Sbjct: 166 GSYDLPFYIELLKERIGK 183


>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB,
           proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR
           binding; 6.93A {Bacillus subtilis}
          Length = 758

 Score = 24.1 bits (53), Expect = 3.1
 Identities = 6/34 (17%), Positives = 13/34 (38%)

Query: 23  LQESAEDLRNKKSANMTECVPVPSSEHVAEIVGR 56
           L+E  ED +        +     + + +A +V  
Sbjct: 432 LREQVEDTKKSWKEKQGQENSEVTVDDIAMVVSS 465


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 23.9 bits (51), Expect = 4.1
 Identities = 10/56 (17%), Positives = 18/56 (32%), Gaps = 19/56 (33%)

Query: 18  HLPSFLQESAEDLRNKKS---ANMTECV---PV-------PSSEHVAEIVGRQGFG 60
            +P +      DLR         + +C+   PV         + H+ +      FG
Sbjct: 456 QIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILD------FG 505


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.309    0.128    0.366 

Gapped
Lambda     K      H
   0.267   0.0792    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 844,576
Number of extensions: 34124
Number of successful extensions: 49
Number of sequences better than 10.0: 1
Number of HSP's gapped: 49
Number of HSP's successfully gapped: 8
Length of query: 61
Length of database: 6,701,793
Length adjustment: 32
Effective length of query: 29
Effective length of database: 5,808,321
Effective search space: 168441309
Effective search space used: 168441309
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 51 (23.3 bits)