BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3067
(141 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O35737|HNRH1_MOUSE Heterogeneous nuclear ribonucleoprotein H OS=Mus musculus
GN=Hnrnph1 PE=1 SV=3
Length = 449
Score = 101 bits (252), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 63/135 (46%), Positives = 77/135 (57%), Gaps = 21/135 (15%)
Query: 12 RYIEVFKVRRQEMDWKLQHTGI------------VEG-----KKDDIAQFFDGLEIISNG 54
RY+EVFK EMDW L+HTG + G K++I QFF GLEI+ NG
Sbjct: 81 RYVEVFKSNNVEMDWVLKHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNG 140
Query: 55 ITLVEDPFNGRPTGEAYVQFVDKETAELALQKHKERIGHRYI-FFTGHRYTVQ--HRAPR 111
ITL D F GR TGEA+VQF +E AE AL+KHKERIGHRYI F R V+ + PR
Sbjct: 141 ITLPVD-FQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSSRAEVRTHYDPPR 199
Query: 112 CETSIPVSSSTHKPG 126
++ +PG
Sbjct: 200 KLMAMQRPGPYDRPG 214
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 45/84 (53%), Gaps = 11/84 (13%)
Query: 15 EVFKVRRQEMDWKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFN--GRPTGEAYV 72
E F V+ + + W D++ +FF +I NG + + GRP+GEA+V
Sbjct: 9 EGFVVKVRGLPWSC--------SADEVQRFFSDCKI-QNGAQGIRFIYTREGRPSGEAFV 59
Query: 73 QFVDKETAELALQKHKERIGHRYI 96
+ ++ +LAL+K +E +GHRY+
Sbjct: 60 ELESEDEVKLALKKDRETMGHRYV 83
Score = 38.1 bits (87), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Query: 38 KDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQKHKERIGHRYI 96
++DI FF L + I + D GR TGEA V+F E A A+ K K + HRY+
Sbjct: 302 ENDIYNFFSPLNPVRVHIEIGPD---GRVTGEADVEFATHEDAVAAMSKDKANMQHRYV 357
>sp|P31943|HNRH1_HUMAN Heterogeneous nuclear ribonucleoprotein H OS=Homo sapiens
GN=HNRNPH1 PE=1 SV=4
Length = 449
Score = 101 bits (252), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 63/135 (46%), Positives = 77/135 (57%), Gaps = 21/135 (15%)
Query: 12 RYIEVFKVRRQEMDWKLQHTGI------------VEG-----KKDDIAQFFDGLEIISNG 54
RY+EVFK EMDW L+HTG + G K++I QFF GLEI+ NG
Sbjct: 81 RYVEVFKSNNVEMDWVLKHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNG 140
Query: 55 ITLVEDPFNGRPTGEAYVQFVDKETAELALQKHKERIGHRYI-FFTGHRYTVQ--HRAPR 111
ITL D F GR TGEA+VQF +E AE AL+KHKERIGHRYI F R V+ + PR
Sbjct: 141 ITLPVD-FQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSSRAEVRTHYDPPR 199
Query: 112 CETSIPVSSSTHKPG 126
++ +PG
Sbjct: 200 KLMAMQRPGPYDRPG 214
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 45/84 (53%), Gaps = 11/84 (13%)
Query: 15 EVFKVRRQEMDWKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFN--GRPTGEAYV 72
E F V+ + + W D++ +FF +I NG + + GRP+GEA+V
Sbjct: 9 EGFVVKVRGLPWSC--------SADEVQRFFSDCKI-QNGAQGIRFIYTREGRPSGEAFV 59
Query: 73 QFVDKETAELALQKHKERIGHRYI 96
+ ++ +LAL+K +E +GHRY+
Sbjct: 60 ELESEDEVKLALKKDRETMGHRYV 83
Score = 38.1 bits (87), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Query: 38 KDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQKHKERIGHRYI 96
++DI FF L + I + D GR TGEA V+F E A A+ K K + HRY+
Sbjct: 302 ENDIYNFFSPLNPVRVHIEIGPD---GRVTGEADVEFATHEDAVAAMSKDKANMQHRYV 357
>sp|Q6AY09|HNRH2_RAT Heterogeneous nuclear ribonucleoprotein H2 OS=Rattus norvegicus
GN=Hnrnph2 PE=1 SV=1
Length = 449
Score = 100 bits (249), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 62/135 (45%), Positives = 77/135 (57%), Gaps = 21/135 (15%)
Query: 12 RYIEVFKVRRQEMDWKLQHTGI------------VEG-----KKDDIAQFFDGLEIISNG 54
RY+EVFK EMDW L+HTG + G K++I QFF GLEI+ NG
Sbjct: 81 RYVEVFKSNSVEMDWVLKHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNG 140
Query: 55 ITLVEDPFNGRPTGEAYVQFVDKETAELALQKHKERIGHRYI-FFTGHRYTVQ--HRAPR 111
+TL D F GR TGEA+VQF +E AE AL+KHKERIGHRYI F R V+ + PR
Sbjct: 141 MTLPVD-FQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSSRAEVRTHYDPPR 199
Query: 112 CETSIPVSSSTHKPG 126
++ +PG
Sbjct: 200 KLMTMQRPGPYDRPG 214
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 46/84 (54%), Gaps = 11/84 (13%)
Query: 15 EVFKVRRQEMDWKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFN--GRPTGEAYV 72
E F V+ + + W +++ +FF +I NG + V + GRP+GEA+V
Sbjct: 9 EGFVVKVRGLPWSC--------SAEEVMRFFSDCKI-QNGTSGVRFIYTREGRPSGEAFV 59
Query: 73 QFVDKETAELALQKHKERIGHRYI 96
+ ++ +LAL+K +E +GHRY+
Sbjct: 60 ELESEDEVKLALKKDRETMGHRYV 83
Score = 37.7 bits (86), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Query: 38 KDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQKHKERIGHRYI 96
++DI FF L + I + D GR TGEA V+F E A A+ K K + HRY+
Sbjct: 302 ENDIYNFFSPLNPMRVHIEIGPD---GRVTGEADVEFATHEDAVAAMAKDKANMQHRYV 357
>sp|Q5RD26|HNRH2_PONAB Heterogeneous nuclear ribonucleoprotein H2 OS=Pongo abelii
GN=HNRNPH2 PE=2 SV=1
Length = 449
Score = 100 bits (249), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 62/135 (45%), Positives = 77/135 (57%), Gaps = 21/135 (15%)
Query: 12 RYIEVFKVRRQEMDWKLQHTGI------------VEG-----KKDDIAQFFDGLEIISNG 54
RY+EVFK EMDW L+HTG + G K++I QFF GLEI+ NG
Sbjct: 81 RYVEVFKSNSVEMDWVLKHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNG 140
Query: 55 ITLVEDPFNGRPTGEAYVQFVDKETAELALQKHKERIGHRYI-FFTGHRYTVQ--HRAPR 111
+TL D F GR TGEA+VQF +E AE AL+KHKERIGHRYI F R V+ + PR
Sbjct: 141 MTLPVD-FQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSSRAEVRTHYDPPR 199
Query: 112 CETSIPVSSSTHKPG 126
++ +PG
Sbjct: 200 KLMAMQRPGPYDRPG 214
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 46/84 (54%), Gaps = 11/84 (13%)
Query: 15 EVFKVRRQEMDWKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFN--GRPTGEAYV 72
E F V+ + + W D++ +FF +I NG + + + GRP+GEA+V
Sbjct: 9 EGFVVKVRGLPWSC--------SADEVMRFFSDCKI-QNGTSGIRFIYTREGRPSGEAFV 59
Query: 73 QFVDKETAELALQKHKERIGHRYI 96
+ +E +LAL+K +E +GHRY+
Sbjct: 60 ELESEEEVKLALKKDRETMGHRYV 83
Score = 37.4 bits (85), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Query: 38 KDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQKHKERIGHRYI 96
++DI FF L + I + D GR TGEA V+F E A A+ K K + HRY+
Sbjct: 302 ENDIYNFFSPLNPMRVHIEIGPD---GRVTGEADVEFATHEDAVAAMAKDKANMQHRYV 357
>sp|P55795|HNRH2_HUMAN Heterogeneous nuclear ribonucleoprotein H2 OS=Homo sapiens
GN=HNRNPH2 PE=1 SV=1
Length = 449
Score = 100 bits (249), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 62/135 (45%), Positives = 77/135 (57%), Gaps = 21/135 (15%)
Query: 12 RYIEVFKVRRQEMDWKLQHTGI------------VEG-----KKDDIAQFFDGLEIISNG 54
RY+EVFK EMDW L+HTG + G K++I QFF GLEI+ NG
Sbjct: 81 RYVEVFKSNSVEMDWVLKHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNG 140
Query: 55 ITLVEDPFNGRPTGEAYVQFVDKETAELALQKHKERIGHRYI-FFTGHRYTVQ--HRAPR 111
+TL D F GR TGEA+VQF +E AE AL+KHKERIGHRYI F R V+ + PR
Sbjct: 141 MTLPVD-FQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSSRAEVRTHYDPPR 199
Query: 112 CETSIPVSSSTHKPG 126
++ +PG
Sbjct: 200 KLMAMQRPGPYDRPG 214
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 46/84 (54%), Gaps = 11/84 (13%)
Query: 15 EVFKVRRQEMDWKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFN--GRPTGEAYV 72
E F V+ + + W D++ +FF +I NG + + + GRP+GEA+V
Sbjct: 9 EGFVVKVRGLPWSC--------SADEVMRFFSDCKI-QNGTSGIRFIYTREGRPSGEAFV 59
Query: 73 QFVDKETAELALQKHKERIGHRYI 96
+ +E +LAL+K +E +GHRY+
Sbjct: 60 ELESEEEVKLALKKDRETMGHRYV 83
Score = 37.4 bits (85), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Query: 38 KDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQKHKERIGHRYI 96
++DI FF L + I + D GR TGEA V+F E A A+ K K + HRY+
Sbjct: 302 ENDIYNFFSPLNPMRVHIEIGPD---GRVTGEADVEFATHEDAVAAMAKDKANMQHRYV 357
>sp|Q3SZF3|HNRH2_BOVIN Heterogeneous nuclear ribonucleoprotein H2 OS=Bos taurus GN=HNRNPH2
PE=2 SV=1
Length = 449
Score = 100 bits (249), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 62/135 (45%), Positives = 77/135 (57%), Gaps = 21/135 (15%)
Query: 12 RYIEVFKVRRQEMDWKLQHTGI------------VEG-----KKDDIAQFFDGLEIISNG 54
RY+EVFK EMDW L+HTG + G K++I QFF GLEI+ NG
Sbjct: 81 RYVEVFKSNSVEMDWVLKHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNG 140
Query: 55 ITLVEDPFNGRPTGEAYVQFVDKETAELALQKHKERIGHRYI-FFTGHRYTVQ--HRAPR 111
+TL D F GR TGEA+VQF +E AE AL+KHKERIGHRYI F R V+ + PR
Sbjct: 141 MTLPVD-FQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSSRAEVRTHYDPPR 199
Query: 112 CETSIPVSSSTHKPG 126
++ +PG
Sbjct: 200 KLMAMQRPGPYDRPG 214
Score = 45.8 bits (107), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 46/84 (54%), Gaps = 11/84 (13%)
Query: 15 EVFKVRRQEMDWKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFN--GRPTGEAYV 72
E F V+ + + W D++ +FF +I NG + + + GRP+GEA+V
Sbjct: 9 EGFVVKVRGLPWSC--------SADEVMRFFSDCKI-QNGTSGIRFIYTREGRPSGEAFV 59
Query: 73 QFVDKETAELALQKHKERIGHRYI 96
+ ++ +LAL+K +E +GHRY+
Sbjct: 60 ELESEDEVKLALKKDRETMGHRYV 83
Score = 37.4 bits (85), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Query: 38 KDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQKHKERIGHRYI 96
++DI FF L + I + D GR TGEA V+F E A A+ K K + HRY+
Sbjct: 302 ENDIYNFFSPLNPMRVHIEIGPD---GRVTGEADVEFATHEDAVAAMAKDKANMQHRYV 357
>sp|P70333|HNRH2_MOUSE Heterogeneous nuclear ribonucleoprotein H2 OS=Mus musculus
GN=Hnrnph2 PE=1 SV=1
Length = 449
Score = 100 bits (249), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 62/135 (45%), Positives = 77/135 (57%), Gaps = 21/135 (15%)
Query: 12 RYIEVFKVRRQEMDWKLQHTGI------------VEG-----KKDDIAQFFDGLEIISNG 54
RY+EVFK EMDW L+HTG + G K++I QFF GLEI+ NG
Sbjct: 81 RYVEVFKSNSVEMDWVLKHTGPNSPDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNG 140
Query: 55 ITLVEDPFNGRPTGEAYVQFVDKETAELALQKHKERIGHRYI-FFTGHRYTVQ--HRAPR 111
+TL D F GR TGEA+VQF +E AE AL+KHKERIGHRYI F R V+ + PR
Sbjct: 141 MTLPVD-FQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSSRAEVRTHYDPPR 199
Query: 112 CETSIPVSSSTHKPG 126
++ +PG
Sbjct: 200 KLMTMQRPGPYDRPG 214
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 46/84 (54%), Gaps = 11/84 (13%)
Query: 15 EVFKVRRQEMDWKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFN--GRPTGEAYV 72
E F V+ + + W +++ +FF +I NG + V + GRP+GEA+V
Sbjct: 9 EGFVVKVRGLPWSC--------SAEEVMRFFSDCKI-QNGTSGVRFIYTREGRPSGEAFV 59
Query: 73 QFVDKETAELALQKHKERIGHRYI 96
+ ++ +LAL+K +E +GHRY+
Sbjct: 60 ELESEDEVKLALKKDRETMGHRYV 83
Score = 37.4 bits (85), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Query: 38 KDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQKHKERIGHRYI 96
++DI FF L + I + D GR TGEA V+F E A A+ K K + HRY+
Sbjct: 302 ENDIYNFFSPLNPMRVHIEIGPD---GRVTGEADVEFATHEDAVAAMAKDKANMQHRYV 357
>sp|Q60HC3|HNRPF_MACFA Heterogeneous nuclear ribonucleoprotein F OS=Macaca fascicularis
GN=HNRNPF PE=2 SV=3
Length = 415
Score = 100 bits (248), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 55/102 (53%), Positives = 63/102 (61%), Gaps = 18/102 (17%)
Query: 12 RYIEVFKVRRQEMDWKLQHTGIVEGK-----------------KDDIAQFFDGLEIISNG 54
RYIEVFK R EMDW L+H+G K++I QFF GLEI+ NG
Sbjct: 81 RYIEVFKSHRTEMDWVLKHSGPNSADSANDGFVRLRGLPFGCTKEEIVQFFSGLEIVPNG 140
Query: 55 ITLVEDPFNGRPTGEAYVQFVDKETAELALQKHKERIGHRYI 96
ITL DP G+ TGEA+VQF +E AE AL KHKERIGHRYI
Sbjct: 141 ITLPVDP-EGKITGEAFVQFASQELAEKALGKHKERIGHRYI 181
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 34/57 (59%), Gaps = 5/57 (8%)
Query: 64 GRPTGEAYVQFVDKETAELALQKHKERIGHRYI-FFTGHR----YTVQHRAPRCETS 115
GR +GEA+V+ ++ ++AL+K +E +GHRYI F HR + ++H P S
Sbjct: 51 GRQSGEAFVELGSEDDVKMALKKDRESMGHRYIEVFKSHRTEMDWVLKHSGPNSADS 107
Score = 37.4 bits (85), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Query: 38 KDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQKHKERIGHRYI 96
++DI FF L + I + D GR TGEA V+F E A A+ K + + HRYI
Sbjct: 302 ENDIYNFFSPLNPVRVHIEIGPD---GRVTGEADVEFATHEEAVAAMSKDRANMQHRYI 357
>sp|Q794E4|HNRPF_RAT Heterogeneous nuclear ribonucleoprotein F OS=Rattus norvegicus
GN=Hnrnpf PE=1 SV=3
Length = 415
Score = 100 bits (248), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 55/102 (53%), Positives = 63/102 (61%), Gaps = 18/102 (17%)
Query: 12 RYIEVFKVRRQEMDWKLQHTGIVEGK-----------------KDDIAQFFDGLEIISNG 54
RYIEVFK R EMDW L+H+G K++I QFF GLEI+ NG
Sbjct: 81 RYIEVFKSHRTEMDWVLKHSGPNSADSANDGFVRLRGLPFGCTKEEIVQFFSGLEIVPNG 140
Query: 55 ITLVEDPFNGRPTGEAYVQFVDKETAELALQKHKERIGHRYI 96
ITL DP G+ TGEA+VQF +E AE AL KHKERIGHRYI
Sbjct: 141 ITLPVDP-EGKITGEAFVQFASQELAEKALGKHKERIGHRYI 181
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 34/57 (59%), Gaps = 5/57 (8%)
Query: 64 GRPTGEAYVQFVDKETAELALQKHKERIGHRYI-FFTGHR----YTVQHRAPRCETS 115
GR +GEA+V+ ++ +LAL+K +E +GHRYI F HR + ++H P S
Sbjct: 51 GRQSGEAFVELESEDDVKLALKKDRESMGHRYIEVFKSHRTEMDWVLKHSGPNSADS 107
Score = 37.4 bits (85), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Query: 38 KDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQKHKERIGHRYI 96
++DI FF L + I + D GR TGEA V+F E A A+ K + + HRYI
Sbjct: 302 ENDIYNFFSPLNPVRVHIEIGPD---GRVTGEADVEFATHEEAVAAMSKDRANMQHRYI 357
>sp|Q9Z2X1|HNRPF_MOUSE Heterogeneous nuclear ribonucleoprotein F OS=Mus musculus GN=Hnrnpf
PE=1 SV=3
Length = 415
Score = 100 bits (248), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 55/102 (53%), Positives = 63/102 (61%), Gaps = 18/102 (17%)
Query: 12 RYIEVFKVRRQEMDWKLQHTGIVEGK-----------------KDDIAQFFDGLEIISNG 54
RYIEVFK R EMDW L+H+G K++I QFF GLEI+ NG
Sbjct: 81 RYIEVFKSHRTEMDWVLKHSGPNSADSANDGFVRLRGLPFGCTKEEIVQFFSGLEIVPNG 140
Query: 55 ITLVEDPFNGRPTGEAYVQFVDKETAELALQKHKERIGHRYI 96
ITL DP G+ TGEA+VQF +E AE AL KHKERIGHRYI
Sbjct: 141 ITLPVDP-EGKITGEAFVQFASQELAEKALGKHKERIGHRYI 181
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 34/57 (59%), Gaps = 5/57 (8%)
Query: 64 GRPTGEAYVQFVDKETAELALQKHKERIGHRYI-FFTGHR----YTVQHRAPRCETS 115
GR +GEA+V+ ++ +LAL+K +E +GHRYI F HR + ++H P S
Sbjct: 51 GRQSGEAFVELESEDDVKLALKKDRESMGHRYIEVFKSHRTEMDWVLKHSGPNSADS 107
Score = 37.4 bits (85), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Query: 38 KDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQKHKERIGHRYI 96
++DI FF L + I + D GR TGEA V+F E A A+ K + + HRYI
Sbjct: 302 ENDIYNFFSPLNPVRVHIEIGPD---GRVTGEADVEFATHEEAVAAMSKDRANMQHRYI 357
>sp|P52597|HNRPF_HUMAN Heterogeneous nuclear ribonucleoprotein F OS=Homo sapiens GN=HNRNPF
PE=1 SV=3
Length = 415
Score = 100 bits (248), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 55/102 (53%), Positives = 63/102 (61%), Gaps = 18/102 (17%)
Query: 12 RYIEVFKVRRQEMDWKLQHTGIVEGK-----------------KDDIAQFFDGLEIISNG 54
RYIEVFK R EMDW L+H+G K++I QFF GLEI+ NG
Sbjct: 81 RYIEVFKSHRTEMDWVLKHSGPNSADSANDGFVRLRGLPFGCTKEEIVQFFSGLEIVPNG 140
Query: 55 ITLVEDPFNGRPTGEAYVQFVDKETAELALQKHKERIGHRYI 96
ITL DP G+ TGEA+VQF +E AE AL KHKERIGHRYI
Sbjct: 141 ITLPVDP-EGKITGEAFVQFASQELAEKALGKHKERIGHRYI 181
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 34/57 (59%), Gaps = 5/57 (8%)
Query: 64 GRPTGEAYVQFVDKETAELALQKHKERIGHRYI-FFTGHR----YTVQHRAPRCETS 115
GR +GEA+V+ ++ ++AL+K +E +GHRYI F HR + ++H P S
Sbjct: 51 GRQSGEAFVELGSEDDVKMALKKDRESMGHRYIEVFKSHRTEMDWVLKHSGPNSADS 107
Score = 37.4 bits (85), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Query: 38 KDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQKHKERIGHRYI 96
++DI FF L + I + D GR TGEA V+F E A A+ K + + HRYI
Sbjct: 302 ENDIYNFFSPLNPVRVHIEIGPD---GRVTGEADVEFATHEEAVAAMSKDRANMQHRYI 357
>sp|Q8VHV7|HNRH1_RAT Heterogeneous nuclear ribonucleoprotein H OS=Rattus norvegicus
GN=Hnrnph1 PE=1 SV=2
Length = 449
Score = 99.8 bits (247), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 62/135 (45%), Positives = 77/135 (57%), Gaps = 21/135 (15%)
Query: 12 RYIEVFKVRRQEMDWKLQHTGI------------VEG-----KKDDIAQFFDGLEIISNG 54
RY+EVFK EMDW L+HTG + G +++I QFF GLEI+ NG
Sbjct: 81 RYVEVFKSNNVEMDWVLKHTGPNSPDTANDGFVRLRGLPFGCSEEEIVQFFSGLEIVPNG 140
Query: 55 ITLVEDPFNGRPTGEAYVQFVDKETAELALQKHKERIGHRYI-FFTGHRYTVQ--HRAPR 111
ITL D F GR TGEA+VQF +E AE AL+KHKERIGHRYI F R V+ + PR
Sbjct: 141 ITLPVD-FQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSSRAEVRTHYDPPR 199
Query: 112 CETSIPVSSSTHKPG 126
++ +PG
Sbjct: 200 KLMAMQRPGPYDRPG 214
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 45/84 (53%), Gaps = 11/84 (13%)
Query: 15 EVFKVRRQEMDWKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFN--GRPTGEAYV 72
E F V+ + + W D++ +FF +I NG + + GRP+GEA+V
Sbjct: 9 EGFVVKVRGLPWSC--------SADEVQRFFSDCKI-QNGAQGIRFIYTREGRPSGEAFV 59
Query: 73 QFVDKETAELALQKHKERIGHRYI 96
+ ++ +LAL+K +E +GHRY+
Sbjct: 60 ELESEDEVKLALKKDRETMGHRYV 83
Score = 37.0 bits (84), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Query: 38 KDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQKHKERIGHRYI 96
++DI FF L + +E +GR TGEA V+F E A A+ K K + HRY+
Sbjct: 302 ENDIYNFFSPLNPVR---VHIETGPDGRVTGEADVEFATHEDAVAAMSKDKANMQHRYV 357
>sp|Q5E9J1|HNRPF_BOVIN Heterogeneous nuclear ribonucleoprotein F OS=Bos taurus GN=HNRNPF
PE=2 SV=3
Length = 414
Score = 99.8 bits (247), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 55/102 (53%), Positives = 63/102 (61%), Gaps = 18/102 (17%)
Query: 12 RYIEVFKVRRQEMDWKLQHTGIVEGK-----------------KDDIAQFFDGLEIISNG 54
RYIEVFK R EMDW L+H+G K++I QFF GLEI+ NG
Sbjct: 81 RYIEVFKSHRTEMDWVLKHSGPNSADTANDGFVRLRGLPFGCTKEEIIQFFSGLEIVPNG 140
Query: 55 ITLVEDPFNGRPTGEAYVQFVDKETAELALQKHKERIGHRYI 96
ITL DP G+ TGEA+VQF +E AE AL KHKERIGHRYI
Sbjct: 141 ITLPVDP-EGKITGEAFVQFASQELAEKALGKHKERIGHRYI 181
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 33/52 (63%), Gaps = 5/52 (9%)
Query: 64 GRPTGEAYVQFVDKETAELALQKHKERIGHRYI-FFTGHR----YTVQHRAP 110
GR +GEA+V+ ++ +LAL+K +E +GHRYI F HR + ++H P
Sbjct: 51 GRQSGEAFVELESEDDVKLALKKDRESMGHRYIEVFKSHRTEMDWVLKHSGP 102
Score = 37.4 bits (85), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Query: 38 KDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQKHKERIGHRYI 96
++DI FF L + I + D GR TGEA V+F E A A+ K + + HRYI
Sbjct: 302 ENDIYNFFSPLNPVRVHIEIGPD---GRVTGEADVEFATHEEAVAAMSKDRANMQHRYI 357
>sp|P31942|HNRH3_HUMAN Heterogeneous nuclear ribonucleoprotein H3 OS=Homo sapiens
GN=HNRNPH3 PE=1 SV=2
Length = 346
Score = 85.9 bits (211), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 46/87 (52%), Positives = 54/87 (62%), Gaps = 15/87 (17%)
Query: 24 MDWKLQHTGIVEGK--------------KDDIAQFFDGLEIISNGITLVEDPFNGRPTGE 69
MDW ++H G + K++I QFF GLEI+ NGITL D + GR TGE
Sbjct: 1 MDWVMKHNGPNDASDGTVRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTMD-YQGRSTGE 59
Query: 70 AYVQFVDKETAELALQKHKERIGHRYI 96
A+VQF KE AE AL KHKERIGHRYI
Sbjct: 60 AFVQFASKEIAENALGKHKERIGHRYI 86
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 33/59 (55%), Gaps = 3/59 (5%)
Query: 38 KDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQKHKERIGHRYI 96
++DIA FF L I I + D GR TGEA V+FV E A A+ K K + HRYI
Sbjct: 208 ENDIANFFSPLNPIRVHIDIGAD---GRATGEADVEFVTHEDAVAAMSKDKNNMQHRYI 263
>sp|Q12849|GRSF1_HUMAN G-rich sequence factor 1 OS=Homo sapiens GN=GRSF1 PE=1 SV=3
Length = 480
Score = 62.8 bits (151), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 42/113 (37%), Positives = 60/113 (53%), Gaps = 20/113 (17%)
Query: 12 RYIEVFKVRRQEMDWKLQ----------HTGIVEGK-------KDDIAQFFDGLEIISNG 54
RY+EV+++ +++D ++ + G+V + + DI FF GL I+
Sbjct: 220 RYVEVYEINNEDVDALMKSLQVKSSPVVNDGVVRLRGLPYSCNEKDIVDFFAGLNIVD-- 277
Query: 55 ITLVEDPFNGRPTGEAYVQFVDKETAELALQKHKERIGHRYI-FFTGHRYTVQ 106
IT V D R TGEAYVQF + E A AL KH+E IG+RYI F R V+
Sbjct: 278 ITFVMDYRGRRKTGEAYVQFEEPEMANQALLKHREEIGNRYIEIFPSRRNEVR 330
Score = 35.4 bits (80), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 42/84 (50%), Gaps = 11/84 (13%)
Query: 15 EVFKVRRQEMDWKLQHTGIVEGKKDDIAQFFDGLEIIS--NGITLVEDPFNGRPTGEAYV 72
+VF +R Q + W +D+ FF I + NGI + + +G+ G+A +
Sbjct: 148 DVFLIRAQGLPWSC--------TMEDVLNFFSDCRIRNGENGIHFLLN-RDGKRRGDALI 198
Query: 73 QFVDKETAELALQKHKERIGHRYI 96
+ ++ + AL+KH+ +G RY+
Sbjct: 199 EMESEQDVQKALEKHRMYMGQRYV 222
Score = 33.1 bits (74), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
Query: 35 EGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQKHKERIGHR 94
+ DI FF L+ + IT+ E +G+ TGEA V F E A A+ K + + HR
Sbjct: 411 QANAQDIINFFAPLKPVR--ITM-EYSSSGKATGEADVHFETHEDAVAAMLKDRSHVHHR 467
Query: 95 YI 96
YI
Sbjct: 468 YI 469
Score = 29.3 bits (64), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 22/37 (59%), Gaps = 5/37 (13%)
Query: 8 EVSDRYIEVFKVRRQEMDWKLQHTGIVEGKKDDIAQF 44
E+ +RYIE+F RR E+ H G +GKK IA F
Sbjct: 313 EIGNRYIEIFPSRRNEVR---THVGSYKGKK--IASF 344
>sp|Q8C5Q4|GRSF1_MOUSE G-rich sequence factor 1 OS=Mus musculus GN=Grsf1 PE=1 SV=2
Length = 479
Score = 62.4 bits (150), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 45/129 (34%), Positives = 65/129 (50%), Gaps = 25/129 (19%)
Query: 12 RYIEVFKVRRQEMDWKLQHT----------GIVEGK-------KDDIAQFFDGLEIISNG 54
RY+EV+++ +++D ++ G+V + + DI FF GL I+
Sbjct: 219 RYVEVYEINNEDVDALMKSLQVKPSPVLSDGVVRLRGLPYSCNEKDIVDFFAGLNIVD-- 276
Query: 55 ITLVEDPFNGRPTGEAYVQFVDKETAELALQKHKERIGHRYI-FFTGHRYTVQ-----HR 108
IT V D R TGEAYVQF + E A AL KH+E IG+RYI F R V+ H+
Sbjct: 277 ITFVMDYRGRRKTGEAYVQFEEPEMANQALLKHREEIGNRYIEIFPSRRNEVRTHVGSHK 336
Query: 109 APRCETSIP 117
+ +S P
Sbjct: 337 GKKMTSSPP 345
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 22/92 (23%), Positives = 45/92 (48%), Gaps = 11/92 (11%)
Query: 7 GEVSDRYIEVFKVRRQEMDWKLQHTGIVEGKKDDIAQFFDGLEIIS--NGITLVEDPFNG 64
++ D +V+ +R Q + W +D+ FF I + NGI + + +G
Sbjct: 139 SKLGDEVDDVYLIRAQGLPWSC--------TVEDVLNFFSDCRIRNSENGIHFLLN-RDG 189
Query: 65 RPTGEAYVQFVDKETAELALQKHKERIGHRYI 96
+ G+A ++ ++ + AL+KH+ +G RY+
Sbjct: 190 KRRGDALIEMESEQDVQKALEKHRMYMGQRYV 221
Score = 33.5 bits (75), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
Query: 35 EGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQKHKERIGHR 94
+ DI FF L+ + IT+ E +G+ TGEA V F E A A+ K + + HR
Sbjct: 410 QANAQDIINFFAPLKPVR--ITM-EYSSSGKATGEADVHFDTHEDAVAAMLKDRSHVQHR 466
Query: 95 YI 96
YI
Sbjct: 467 YI 468
>sp|Q8K0G8|ESRP2_MOUSE Epithelial splicing regulatory protein 2 OS=Mus musculus GN=Esrp2
PE=2 SV=1
Length = 717
Score = 58.9 bits (141), Expect = 8e-09, Method: Composition-based stats.
Identities = 35/95 (36%), Positives = 48/95 (50%), Gaps = 12/95 (12%)
Query: 2 GHCRTGEVSDRYIEVFKVRRQEMDWKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDP 61
G C +V D VR + + W + D+A+FF GL I G+ L +
Sbjct: 235 GPCSKADVVDNET---VVRARGLPW--------QSSDQDVARFFKGLNIARGGVALCLNA 283
Query: 62 FNGRPTGEAYVQFVDKETAELALQKHKERIGHRYI 96
GR GEA ++FVD E +LALQ+HK +G RYI
Sbjct: 284 -QGRRNGEALIRFVDSEQRDLALQRHKHHMGVRYI 317
Score = 44.7 bits (104), Expect = 2e-04, Method: Composition-based stats.
Identities = 20/45 (44%), Positives = 31/45 (68%), Gaps = 1/45 (2%)
Query: 52 SNGITLVEDPFNGRPTGEAYVQFVDKETAELALQKHKERIGHRYI 96
++G+ V P +GRPTG+A+ F +E A+ AL++HK +G RYI
Sbjct: 378 ADGLLFVRHP-DGRPTGDAFALFACEELAQAALRRHKGMLGKRYI 421
Score = 33.5 bits (75), Expect = 0.37, Method: Composition-based stats.
Identities = 23/72 (31%), Positives = 39/72 (54%), Gaps = 8/72 (11%)
Query: 28 LQHTGIVEGKKDDIAQFFD--GLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ 85
L +T +E DI F +I +G+ +V + GRP+G+A++Q + E A A Q
Sbjct: 472 LPYTATIE----DILSFLGEAAADIRPHGVHMVLNQ-QGRPSGDAFIQMMSVERALAAAQ 526
Query: 86 K-HKERIGHRYI 96
+ HK+ + RY+
Sbjct: 527 RCHKKMMKERYV 538
>sp|Q9H6T0|ESRP2_HUMAN Epithelial splicing regulatory protein 2 OS=Homo sapiens GN=ESRP2
PE=1 SV=1
Length = 727
Score = 57.8 bits (138), Expect = 2e-08, Method: Composition-based stats.
Identities = 30/78 (38%), Positives = 43/78 (55%), Gaps = 9/78 (11%)
Query: 19 VRRQEMDWKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKE 78
VR + + W + D+A+FF GL + G+ L + GR GEA ++FVD E
Sbjct: 259 VRARGLPW--------QSSDQDVARFFKGLNVARGGVALCLNA-QGRRNGEALIRFVDSE 309
Query: 79 TAELALQKHKERIGHRYI 96
+LALQ+HK +G RYI
Sbjct: 310 QRDLALQRHKHHMGVRYI 327
Score = 44.3 bits (103), Expect = 3e-04, Method: Composition-based stats.
Identities = 20/45 (44%), Positives = 30/45 (66%), Gaps = 1/45 (2%)
Query: 52 SNGITLVEDPFNGRPTGEAYVQFVDKETAELALQKHKERIGHRYI 96
+ G+ V P +GRPTG+A+ F +E A+ AL++HK +G RYI
Sbjct: 388 TEGLLFVRHP-DGRPTGDAFALFACEELAQAALRRHKGMLGKRYI 431
Score = 33.5 bits (75), Expect = 0.42, Method: Composition-based stats.
Identities = 23/72 (31%), Positives = 38/72 (52%), Gaps = 8/72 (11%)
Query: 28 LQHTGIVEGKKDDIAQFFD--GLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ 85
L +T +E DI F +I +G+ +V + GRP+G+A++Q E A A Q
Sbjct: 482 LPYTATIE----DILSFLGEAAADIRPHGVHMVLNQ-QGRPSGDAFIQMTSAERALAAAQ 536
Query: 86 K-HKERIGHRYI 96
+ HK+ + RY+
Sbjct: 537 RCHKKVMKERYV 548
>sp|Q5ZLR4|ESRP2_CHICK Epithelial splicing regulatory protein 2 OS=Gallus gallus GN=ESRP2
PE=2 SV=1
Length = 701
Score = 57.4 bits (137), Expect = 3e-08, Method: Composition-based stats.
Identities = 28/62 (45%), Positives = 38/62 (61%), Gaps = 1/62 (1%)
Query: 35 EGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQKHKERIGHR 94
+ DIA+FF GL I G+ L + GR GEA V+FV+ E +LAL++HK +G R
Sbjct: 236 QSSDQDIARFFKGLNIAKGGVALCLNA-QGRRNGEALVRFVNSEQRDLALERHKHHMGSR 294
Query: 95 YI 96
YI
Sbjct: 295 YI 296
Score = 48.9 bits (115), Expect = 9e-06, Method: Composition-based stats.
Identities = 37/117 (31%), Positives = 53/117 (45%), Gaps = 36/117 (30%)
Query: 9 VSDRYIEVFKVRRQEMDWKLQHTGIVEGKKDDIAQFFD----------GLEIISN----- 53
+ RYIEV+K +E I G +++AQF GL +
Sbjct: 291 MGSRYIEVYKATGEEF------LKIAGGTSNEVAQFLSKENQVIIRMRGLPFTATQEDVL 344
Query: 54 --------------GITLVEDPFNGRPTGEAYVQFVDKETAELALQKHKERIGHRYI 96
G+ V+ P +GRPTG+A+V F +E A+ AL+KHKE +G RYI
Sbjct: 345 GFLGPECPVTGGKEGLLFVKYP-DGRPTGDAFVLFSCEEYAQNALKKHKEILGKRYI 400
Score = 32.7 bits (73), Expect = 0.60, Method: Composition-based stats.
Identities = 20/61 (32%), Positives = 34/61 (55%), Gaps = 4/61 (6%)
Query: 39 DDIAQFFDGL--EIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQK-HKERIGHRY 95
DDI F +I +G+ +V + GRP+G+A++Q + A + QK HK+ + RY
Sbjct: 461 DDILDFMGDATADIKPHGVHMVLNQ-QGRPSGDAFIQMKSADKAFMVAQKCHKKMMKDRY 519
Query: 96 I 96
+
Sbjct: 520 V 520
>sp|Q6DEZ7|ESRP1_XENTR Epithelial splicing regulatory protein 1 OS=Xenopus tropicalis
GN=esrp1 PE=2 SV=1
Length = 687
Score = 57.0 bits (136), Expect = 3e-08, Method: Composition-based stats.
Identities = 29/62 (46%), Positives = 38/62 (61%), Gaps = 1/62 (1%)
Query: 35 EGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQKHKERIGHR 94
+ DIA+FF GL I G L + GR GEA V+FV +E +LALQ+HK +G+R
Sbjct: 236 QSSDQDIARFFKGLNIAKGGAALCLNA-QGRRNGEALVRFVSEEHRDLALQRHKHHMGNR 294
Query: 95 YI 96
YI
Sbjct: 295 YI 296
Score = 47.8 bits (112), Expect = 2e-05, Method: Composition-based stats.
Identities = 38/117 (32%), Positives = 55/117 (47%), Gaps = 36/117 (30%)
Query: 9 VSDRYIEVFKVRRQEMDWKLQHTGIVEGKKDDIAQFFD----------GL-------EII 51
+ +RYIEV+K ++ I G +++AQF GL E++
Sbjct: 291 MGNRYIEVYKATGEDF------LKIAGGTSNEVAQFLSKENQVIVRMRGLPFTATAEEVL 344
Query: 52 S------------NGITLVEDPFNGRPTGEAYVQFVDKETAELALQKHKERIGHRYI 96
+ GI V P N RPTG+A+V F +E A+ AL+KHKE +G RYI
Sbjct: 345 AFFGQQCPVTGGKEGILFVTYPDN-RPTGDAFVLFACEEYAQNALKKHKELLGKRYI 400
Score = 35.0 bits (79), Expect = 0.13, Method: Composition-based stats.
Identities = 20/61 (32%), Positives = 37/61 (60%), Gaps = 4/61 (6%)
Query: 39 DDIAQFFDGL--EIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQK-HKERIGHRY 95
+DI +F +I ++G+ +V + GRP+G++++Q + A LA QK HK+ + RY
Sbjct: 460 EDILEFLGEFSADIRTHGVHMVLN-HQGRPSGDSFIQMKSADRAYLAAQKCHKKTMKDRY 518
Query: 96 I 96
+
Sbjct: 519 V 519
>sp|Q7ZY29|ESRP1_XENLA Epithelial splicing regulatory protein 1 OS=Xenopus laevis GN=esrp1
PE=2 SV=1
Length = 688
Score = 57.0 bits (136), Expect = 3e-08, Method: Composition-based stats.
Identities = 29/62 (46%), Positives = 38/62 (61%), Gaps = 1/62 (1%)
Query: 35 EGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQKHKERIGHR 94
+ DIA+FF GL I G L + GR GEA V+FV +E +LALQ+HK +G+R
Sbjct: 236 QSSDQDIARFFKGLNIAKGGAALCLNA-QGRRNGEALVRFVSEEHRDLALQRHKHHMGNR 294
Query: 95 YI 96
YI
Sbjct: 295 YI 296
Score = 47.8 bits (112), Expect = 2e-05, Method: Composition-based stats.
Identities = 38/117 (32%), Positives = 55/117 (47%), Gaps = 36/117 (30%)
Query: 9 VSDRYIEVFKVRRQEMDWKLQHTGIVEGKKDDIAQFFD----------GL-------EII 51
+ +RYIEV+K ++ I G +++AQF GL E++
Sbjct: 291 MGNRYIEVYKATGEDF------LKIAGGTSNEVAQFLSKENQVIVRMRGLPFTATAEEVL 344
Query: 52 S------------NGITLVEDPFNGRPTGEAYVQFVDKETAELALQKHKERIGHRYI 96
+ GI V P N RPTG+A+V F +E A+ AL+KHKE +G RYI
Sbjct: 345 AFFGQQCPVTGGKEGILFVTYPDN-RPTGDAFVLFACEEYAQNALKKHKELLGKRYI 400
Score = 35.0 bits (79), Expect = 0.13, Method: Composition-based stats.
Identities = 20/61 (32%), Positives = 37/61 (60%), Gaps = 4/61 (6%)
Query: 39 DDIAQFFDGL--EIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQK-HKERIGHRY 95
+DI +F +I ++G+ +V + GRP+G++++Q + A LA QK HK+ + RY
Sbjct: 460 EDILEFLGEFSADIRTHGVHMVLN-HQGRPSGDSFIQMKSADRAYLAAQKCHKKTMKDRY 518
Query: 96 I 96
+
Sbjct: 519 V 519
>sp|Q9BJZ5|FUSIL_DROME RNA-binding protein fusilli OS=Drosophila melanogaster GN=fus PE=2
SV=1
Length = 967
Score = 56.6 bits (135), Expect = 4e-08, Method: Composition-based stats.
Identities = 27/62 (43%), Positives = 38/62 (61%), Gaps = 1/62 (1%)
Query: 35 EGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQKHKERIGHR 94
+ DIA+FF GL + G+ L P GR GEA ++FV +E ++AL++HK IG R
Sbjct: 289 QSSDQDIAKFFRGLNVAKGGVALCLSPL-GRRNGEALIRFVCQEHRDMALKRHKHHIGTR 347
Query: 95 YI 96
YI
Sbjct: 348 YI 349
Score = 43.5 bits (101), Expect = 4e-04, Method: Composition-based stats.
Identities = 20/45 (44%), Positives = 30/45 (66%), Gaps = 1/45 (2%)
Query: 52 SNGITLVEDPFNGRPTGEAYVQFVDKETAELALQKHKERIGHRYI 96
+ G+ V+ P +GR TG+A+V F ++ A AL +H+E IG RYI
Sbjct: 414 NEGVLFVKKP-DGRATGDAFVLFANETDAPKALGRHRESIGQRYI 457
Score = 34.3 bits (77), Expect = 0.23, Method: Composition-based stats.
Identities = 23/71 (32%), Positives = 36/71 (50%), Gaps = 6/71 (8%)
Query: 35 EGKKDDIAQFFDGL--EIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQKHKERIG 92
E + I F D II G+ +V + G+P+GEA++Q +E+A L Q+ R
Sbjct: 556 EAMVEHILHFLDDFAKHIIYQGVHMVINA-QGQPSGEAFIQMDLEESARLCAQR---RHN 611
Query: 93 HRYIFFTGHRY 103
H +F +RY
Sbjct: 612 HYMMFGKKYRY 622
>sp|B2RYJ8|ESRP2_RAT Epithelial splicing regulatory protein 2 OS=Rattus norvegicus
GN=Esrp2 PE=2 SV=1
Length = 716
Score = 56.6 bits (135), Expect = 5e-08, Method: Composition-based stats.
Identities = 33/95 (34%), Positives = 48/95 (50%), Gaps = 13/95 (13%)
Query: 2 GHCRTGEVSDRYIEVFKVRRQEMDWKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDP 61
G C+ V + + VR + + W + D+A+FF GL I G+ L +
Sbjct: 235 GPCKADVVDNETV----VRARGLPW--------QSSDQDVARFFKGLNIARGGVALCLNA 282
Query: 62 FNGRPTGEAYVQFVDKETAELALQKHKERIGHRYI 96
GR GEA ++F D E +LALQ+HK +G RYI
Sbjct: 283 -QGRRNGEALIRFEDSEQRDLALQRHKHHMGVRYI 316
Score = 44.3 bits (103), Expect = 2e-04, Method: Composition-based stats.
Identities = 20/44 (45%), Positives = 30/44 (68%), Gaps = 1/44 (2%)
Query: 53 NGITLVEDPFNGRPTGEAYVQFVDKETAELALQKHKERIGHRYI 96
+G+ V P +GRPTG+A+ F +E A+ AL++HK +G RYI
Sbjct: 378 DGLLFVRHP-DGRPTGDAFALFACEELAQAALRRHKGMLGKRYI 420
Score = 33.1 bits (74), Expect = 0.53, Method: Composition-based stats.
Identities = 23/72 (31%), Positives = 39/72 (54%), Gaps = 8/72 (11%)
Query: 28 LQHTGIVEGKKDDIAQFFD--GLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ 85
L +T +E DI F +I +G+ +V + GRP+G+A++Q + E A A Q
Sbjct: 471 LPYTATIE----DILSFLGEAAADIRPHGVHMVLNQ-QGRPSGDAFIQMMSVERALAAAQ 525
Query: 86 K-HKERIGHRYI 96
+ HK+ + RY+
Sbjct: 526 RCHKKVMKERYV 537
>sp|Q3US41|ESRP1_MOUSE Epithelial splicing regulatory protein 1 OS=Mus musculus GN=Esrp1
PE=2 SV=2
Length = 680
Score = 56.2 bits (134), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 35/95 (36%), Positives = 48/95 (50%), Gaps = 13/95 (13%)
Query: 2 GHCRTGEVSDRYIEVFKVRRQEMDWKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDP 61
G C+ + D + VR + + W + DIA+FF GL I G L +
Sbjct: 213 GTCKMELIDDSTV----VRARGLPW--------QSSDQDIARFFKGLNIAKGGAALCLNA 260
Query: 62 FNGRPTGEAYVQFVDKETAELALQKHKERIGHRYI 96
GR GEA V+FV +E +LALQ+HK +G RYI
Sbjct: 261 -QGRRNGEALVRFVSEEHRDLALQRHKHHMGTRYI 294
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 54/114 (47%), Gaps = 36/114 (31%)
Query: 12 RYIEVFKVRRQEMDWKLQHTGIVEGKKDDIAQFFD----------GL-------EIIS-- 52
RYIEV+K ++ I G +++AQF GL E+++
Sbjct: 292 RYIEVYKATGEDF------LKIAGGTSNEVAQFLSKENQVIVRMRGLPFTATAEEVVAFF 345
Query: 53 ----------NGITLVEDPFNGRPTGEAYVQFVDKETAELALQKHKERIGHRYI 96
GI V P +GRPTG+A+V F +E A+ AL+KHKE +G RYI
Sbjct: 346 GQHCPITGGKEGILFVTYP-DGRPTGDAFVLFACEEYAQNALRKHKELLGKRYI 398
Score = 33.9 bits (76), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 40/70 (57%), Gaps = 4/70 (5%)
Query: 28 LQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQK- 86
L + +E D + +F +I ++G+ +V + GRP+G+A++Q + A +A QK
Sbjct: 451 LPYAATIEDILDFLGEF--STDIRTHGVHMVLN-HQGRPSGDAFIQMKSTDRAFMAAQKY 507
Query: 87 HKERIGHRYI 96
HK+ + RY+
Sbjct: 508 HKKTMKDRYV 517
>sp|Q7ZVR8|ESRP2_DANRE Epithelial splicing regulatory protein 2 OS=Danio rerio GN=esrp2
PE=2 SV=2
Length = 736
Score = 54.7 bits (130), Expect = 2e-07, Method: Composition-based stats.
Identities = 26/62 (41%), Positives = 37/62 (59%), Gaps = 1/62 (1%)
Query: 35 EGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQKHKERIGHR 94
+ DIA+FF GL I G+ L + GR GEA V+F++ E ++AL +HK +G R
Sbjct: 234 QSSDQDIARFFKGLNIAKGGVALCLNA-QGRRNGEALVRFINSEHRDMALDRHKHHMGSR 292
Query: 95 YI 96
YI
Sbjct: 293 YI 294
Score = 48.5 bits (114), Expect = 1e-05, Method: Composition-based stats.
Identities = 36/117 (30%), Positives = 53/117 (45%), Gaps = 36/117 (30%)
Query: 9 VSDRYIEVFKVRRQEMDWKLQHTGIVEGKKDDIAQFFD----------GLEII------- 51
+ RYIEV+K +E I G +++AQF GL
Sbjct: 289 MGSRYIEVYKATGEEF------LKIAGGTSNEVAQFLSKENQMIIRMRGLPFTATPQDVL 342
Query: 52 ------------SNGITLVEDPFNGRPTGEAYVQFVDKETAELALQKHKERIGHRYI 96
+ G+ V+ P +GRPTG+A+V F +E A+ AL+KHK+ +G RYI
Sbjct: 343 GFLGPECPVTDGTEGLLFVKYP-DGRPTGDAFVLFACEEYAQNALKKHKQILGKRYI 398
Score = 33.1 bits (74), Expect = 0.52, Method: Composition-based stats.
Identities = 19/61 (31%), Positives = 36/61 (59%), Gaps = 4/61 (6%)
Query: 39 DDIAQFF--DGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQK-HKERIGHRY 95
+DI +F ++I +G+ +V + GRP+G+A++Q + A + QK HK+ + RY
Sbjct: 464 EDILEFMGEHTIDIKPHGVHMVLNQ-QGRPSGDAFIQMKSADRAFMVAQKCHKKMMKDRY 522
Query: 96 I 96
+
Sbjct: 523 V 523
>sp|Q6NXG1|ESRP1_HUMAN Epithelial splicing regulatory protein 1 OS=Homo sapiens GN=ESRP1
PE=1 SV=2
Length = 681
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/95 (37%), Positives = 48/95 (50%), Gaps = 12/95 (12%)
Query: 2 GHCRTGEVSDRYIEVFKVRRQEMDWKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDP 61
G C E+ D + VR + + W + DIA+FF GL I G L +
Sbjct: 213 GTCSKMELID---DNTVVRARGLPW--------QSSDQDIARFFKGLNIAKGGAALCLNA 261
Query: 62 FNGRPTGEAYVQFVDKETAELALQKHKERIGHRYI 96
GR GEA V+FV +E +LALQ+HK +G RYI
Sbjct: 262 -QGRRNGEALVRFVSEEHRDLALQRHKHHMGTRYI 295
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 54/114 (47%), Gaps = 36/114 (31%)
Query: 12 RYIEVFKVRRQEMDWKLQHTGIVEGKKDDIAQFFD----------GL-------EIIS-- 52
RYIEV+K ++ I G +++AQF GL E+++
Sbjct: 293 RYIEVYKATGEDF------LKIAGGTSNEVAQFLSKENQVIVRMRGLPFTATAEEVVAFF 346
Query: 53 ----------NGITLVEDPFNGRPTGEAYVQFVDKETAELALQKHKERIGHRYI 96
GI V P +GRPTG+A+V F +E A+ AL+KHK+ +G RYI
Sbjct: 347 GQHCPITGGKEGILFVTYP-DGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYI 399
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 40/70 (57%), Gaps = 4/70 (5%)
Query: 28 LQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQK- 86
L + +E D + +F +I ++G+ +V + GRP+G+A++Q + A +A QK
Sbjct: 452 LPYAATIEDILDFLGEF--ATDIRTHGVHMVLN-HQGRPSGDAFIQMKSADRAFMAAQKC 508
Query: 87 HKERIGHRYI 96
HK+ + RY+
Sbjct: 509 HKKNMKDRYV 518
>sp|B2RYD2|ESRP1_RAT Epithelial splicing regulatory protein 1 OS=Rattus norvegicus
GN=Esrp1 PE=2 SV=2
Length = 677
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 42/78 (53%), Gaps = 9/78 (11%)
Query: 19 VRRQEMDWKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKE 78
VR + + W + DIA+FF GL I G L + GR GEA V+FV +E
Sbjct: 227 VRARGLPW--------QSSDQDIARFFKGLNIAKGGAALCLNA-QGRRNGEALVRFVSEE 277
Query: 79 TAELALQKHKERIGHRYI 96
+LALQ+HK +G RYI
Sbjct: 278 HRDLALQRHKHHMGTRYI 295
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/146 (30%), Positives = 66/146 (45%), Gaps = 39/146 (26%)
Query: 12 RYIEVFKVRRQEMDWKLQHTGIVEGKKDDIAQFFD----------GL-------EIIS-- 52
RYIEV+K ++ I G +++AQF GL E+++
Sbjct: 293 RYIEVYKATGEDF------LKIAGGTSNEVAQFLSKENQVIVRMRGLPFTATAEEVVAFF 346
Query: 53 ----------NGITLVEDPFNGRPTGEAYVQFVDKETAELALQKHKERIGHRYI-FFTGH 101
GI V P +GRPTG+A+V F +E A+ AL+KHK+ +G RYI F
Sbjct: 347 GQHCPITGGKEGILFVTYP-DGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIELFRST 405
Query: 102 RYTVQHRAPRCETS--IPVSSSTHKP 125
VQ R ++ IP+ ++ P
Sbjct: 406 AAEVQQVLNRFSSAPLIPLPTAPIIP 431
Score = 33.5 bits (75), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 40/70 (57%), Gaps = 4/70 (5%)
Query: 28 LQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQK- 86
L + +E D + +F +I ++G+ +V + GRP+G+A++Q + A +A QK
Sbjct: 452 LPYAATIEDILDFLGEF--STDIRTHGVHMVLN-HQGRPSGDAFIQMKSTDRAFMAAQKY 508
Query: 87 HKERIGHRYI 96
HK+ + RY+
Sbjct: 509 HKKTMKDRYV 518
>sp|A1L1G1|ESRP1_DANRE Epithelial splicing regulatory protein 1 OS=Danio rerio GN=esrp1
PE=2 SV=1
Length = 714
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 41/78 (52%), Gaps = 9/78 (11%)
Query: 19 VRRQEMDWKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKE 78
+R + + W + DIA+FF GL I G L + GR GEA V+F +E
Sbjct: 227 IRARGLPW--------QSSDQDIARFFRGLNIAKGGAALCLNA-QGRRNGEALVRFESEE 277
Query: 79 TAELALQKHKERIGHRYI 96
+LALQ+HK +G RYI
Sbjct: 278 HRDLALQRHKHHMGGRYI 295
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/89 (38%), Positives = 49/89 (55%), Gaps = 7/89 (7%)
Query: 39 DDIAQFFDGLEII---SNGITLVEDPFNGRPTGEAYVQFVDKETAELALQKHKERIGHRY 95
+ + QFF + S GI V P +GRPTG+A+V F +E A+ AL+KHK+ +G RY
Sbjct: 340 EQVLQFFSPACPVTDGSEGILFVRFP-DGRPTGDAFVLFSCEEHAQNALKKHKDMLGKRY 398
Query: 96 I-FFTGHRYTVQHRAPRCETS--IPVSSS 121
I F VQ + ++ IPV+ S
Sbjct: 399 IELFKSTAAEVQQVLNKYSSAPLIPVAPS 427
Score = 35.8 bits (81), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 35/60 (58%), Gaps = 4/60 (6%)
Query: 40 DIAQFFD--GLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQK-HKERIGHRYI 96
DI F G +I ++G+ +V + GRP+GEA++Q E A LA Q+ HK + RY+
Sbjct: 465 DILVFLGEYGADIKTHGVHMVLN-HQGRPSGEAFIQMRSAERAFLAAQRCHKRSMKERYV 523
>sp|Q22708|SYM2_CAEEL RNA-binding protein sym-2 OS=Caenorhabditis elegans GN=sym-2 PE=2
SV=3
Length = 618
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 62/137 (45%), Gaps = 25/137 (18%)
Query: 12 RYIEVFKVRRQE------------MDWKLQHTGIVEGK-------KDDIAQFFDGLEIIS 52
RYIEV+K E M++ + IV + I FF+ L++
Sbjct: 249 RYIEVYKAGLDEFMHVATGSSTEAMEFVSANAIIVRMRGLPYDCTDAQIRTFFEPLKLTD 308
Query: 53 NGITLVEDPFNGRPTGEAYVQFVDKETAELALQKHKERIGHRYI-FFTGHRYTVQHRAPR 111
+ + +GRPTG+A+VQF +E A+ L KH++ IG RYI F VQ R
Sbjct: 309 KILFITRT--DGRPTGDAFVQFETEEDAQQGLLKHRQVIGQRYIELFKSTAAEVQQVVKR 366
Query: 112 C---ETSIPVSSSTHKP 125
C +S V+++ P
Sbjct: 367 CNLINSSPAVANAVEAP 383
Score = 48.9 bits (115), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 35/56 (62%), Gaps = 1/56 (1%)
Query: 41 IAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQKHKERIGHRYI 96
+AQFF GL+I+ GI L GR GE VQF +E+ +LAL++H+ + RYI
Sbjct: 197 VAQFFAGLDIVPGGIALCLSS-EGRRNGEVLVQFSSQESRDLALKRHRNFLLSRYI 251
>sp|Q5RBM8|RBM12_PONAB RNA-binding protein 12 OS=Pongo abelii GN=RBM12 PE=2 SV=1
Length = 932
Score = 45.4 bits (106), Expect = 1e-04, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 38/62 (61%), Gaps = 1/62 (1%)
Query: 35 EGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQKHKERIGHR 94
E + + FF L+I+ + I + P NG+ TGE +V+F ++ + AL +HK+ +G+R
Sbjct: 440 EAENKHVIDFFKKLDIVEDSIYIAYGP-NGKATGEGFVEFRNEADYKAALCRHKQYMGNR 498
Query: 95 YI 96
+I
Sbjct: 499 FI 500
Score = 36.2 bits (82), Expect = 0.067, Method: Composition-based stats.
Identities = 18/60 (30%), Positives = 36/60 (60%), Gaps = 1/60 (1%)
Query: 38 KDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQKHKERIGHRYIF 97
K D+ QF +G+ + N + ++ D NG+ G+A VQF +++ A + + H++++ R F
Sbjct: 557 KMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERLHRKKLNGREAF 615
Score = 32.7 bits (73), Expect = 0.76, Method: Composition-based stats.
Identities = 21/59 (35%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Query: 39 DDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQKHKER-IGHRYI 96
D+I FF G ++I + L + G PTGEA V F ++ A A+ +R IG R +
Sbjct: 872 DEILDFFYGYQVIPGSVCLKYNE-KGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKV 929
>sp|Q8SQ27|RBM12_MACMU RNA-binding protein 12 OS=Macaca mulatta GN=RBM12 PE=2 SV=1
Length = 932
Score = 45.4 bits (106), Expect = 1e-04, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 38/62 (61%), Gaps = 1/62 (1%)
Query: 35 EGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQKHKERIGHR 94
E + + FF L+I+ + I + P NG+ TGE +V+F ++ + AL +HK+ +G+R
Sbjct: 440 EAENKHVIDFFKKLDIVEDSIYIAYGP-NGKATGEGFVEFRNEADYKAALCRHKQYMGNR 498
Query: 95 YI 96
+I
Sbjct: 499 FI 500
Score = 36.2 bits (82), Expect = 0.067, Method: Composition-based stats.
Identities = 18/60 (30%), Positives = 36/60 (60%), Gaps = 1/60 (1%)
Query: 38 KDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQKHKERIGHRYIF 97
K D+ QF +G+ + N + ++ D NG+ G+A VQF +++ A + + H++++ R F
Sbjct: 557 KMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERLHRKKLNGREAF 615
Score = 32.7 bits (73), Expect = 0.76, Method: Composition-based stats.
Identities = 21/59 (35%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Query: 39 DDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQKHKER-IGHRYI 96
D+I FF G ++I + L + G PTGEA V F ++ A A+ +R IG R +
Sbjct: 870 DEILDFFYGYQVIPGSVCLKYNE-KGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKV 927
>sp|Q9NTZ6|RBM12_HUMAN RNA-binding protein 12 OS=Homo sapiens GN=RBM12 PE=1 SV=1
Length = 932
Score = 45.4 bits (106), Expect = 1e-04, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 38/62 (61%), Gaps = 1/62 (1%)
Query: 35 EGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQKHKERIGHR 94
E + + FF L+I+ + I + P NG+ TGE +V+F ++ + AL +HK+ +G+R
Sbjct: 440 EAENKHVIDFFKKLDIVEDSIYIAYGP-NGKATGEGFVEFRNEADYKAALCRHKQYMGNR 498
Query: 95 YI 96
+I
Sbjct: 499 FI 500
Score = 36.2 bits (82), Expect = 0.067, Method: Composition-based stats.
Identities = 18/60 (30%), Positives = 36/60 (60%), Gaps = 1/60 (1%)
Query: 38 KDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQKHKERIGHRYIF 97
K D+ QF +G+ + N + ++ D NG+ G+A VQF +++ A + + H++++ R F
Sbjct: 557 KMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERLHRKKLNGREAF 615
Score = 32.7 bits (73), Expect = 0.76, Method: Composition-based stats.
Identities = 21/59 (35%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Query: 39 DDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQKHKER-IGHRYI 96
D+I FF G ++I + L + G PTGEA V F ++ A A+ +R IG R +
Sbjct: 870 DEILDFFYGYQVIPGSVCLKYNE-KGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKV 927
>sp|Q8R4X3|RBM12_MOUSE RNA-binding protein 12 OS=Mus musculus GN=Rbm12 PE=1 SV=3
Length = 992
Score = 44.7 bits (104), Expect = 2e-04, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 37/62 (59%), Gaps = 1/62 (1%)
Query: 35 EGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQKHKERIGHR 94
E + + FF L+I+ + I + P NG+ TGE +V+F + + AL +HK+ +G+R
Sbjct: 440 EAENKHVIDFFKKLDIVEDSIYIAYGP-NGKATGEGFVEFRNDADYKAALCRHKQYMGNR 498
Query: 95 YI 96
+I
Sbjct: 499 FI 500
Score = 33.1 bits (74), Expect = 0.60, Method: Composition-based stats.
Identities = 17/60 (28%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
Query: 38 KDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQKHKERIGHRYIF 97
K D+ QF +G+ + + + ++ D NG+ G+A VQF ++ A + H++++ R F
Sbjct: 557 KMDVLQFLEGIPVDESAVHVLVDN-NGQGLGQALVQFKTEDDAHKSEHLHRKKLNGREAF 615
Score = 32.7 bits (73), Expect = 0.75, Method: Composition-based stats.
Identities = 21/59 (35%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Query: 39 DDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQKHKER-IGHRYI 96
D+I FF G ++I + L + G PTGEA V F ++ A A+ +R IG R +
Sbjct: 930 DEILDFFYGYQVIPGSVCLKYNE-KGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKV 987
Score = 29.6 bits (65), Expect = 6.2, Method: Composition-based stats.
Identities = 16/59 (27%), Positives = 34/59 (57%), Gaps = 3/59 (5%)
Query: 38 KDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQKHKERIGHRYI 96
++D+ +FF GL + + + L++D GR G V+F+ + AL++++ + RY+
Sbjct: 317 ENDVREFFHGLRV--DAVHLLKDHV-GRNNGNGLVKFLSPQDTFEALKRNRMLMIQRYV 372
>sp|A8WPC5|SYM2_CAEBR RNA-binding protein sym-2 OS=Caenorhabditis briggsae GN=sym-2 PE=3
SV=2
Length = 634
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 45/87 (51%), Gaps = 7/87 (8%)
Query: 41 IAQFFDGLEIISNGITLVEDPFNGRPTG--EAYVQFVDKETAELALQKHKERIGHRYI-F 97
I FF+ L++ + + +GRPTG +A+VQF +E A+ L KH++ IG RYI
Sbjct: 301 IRAFFEPLKLTEKILFITRT--DGRPTGNCDAFVQFETEEDAQQGLLKHRQVIGQRYIEL 358
Query: 98 FTGHRYTVQHRAPRCE--TSIPVSSST 122
F VQ RC S PV ++
Sbjct: 359 FKSTAAEVQQVVKRCNLINSAPVVANA 385
>sp|Q54ZS8|PABP2_DICDI Polyadenylate-binding protein 2 OS=Dictyostelium discoideum
GN=pabpn1 PE=3 SV=1
Length = 222
Score = 36.2 bits (82), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 42/89 (47%), Gaps = 3/89 (3%)
Query: 16 VFKVRRQEMDWKLQHTGIVEGKK--DDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQ 73
+ ++E+D + + G V+ K D I +F + N IT++ D G P G YV+
Sbjct: 90 LMNTDQEEIDSRSVYVGNVDYKSTHDQILAYFQSCGTV-NRITILSDKTTGHPKGCCYVE 148
Query: 74 FVDKETAELALQKHKERIGHRYIFFTGHR 102
FV+KE+ A+ + R + T R
Sbjct: 149 FVNKESIINAMALNDSFFNERQLKITPKR 177
>sp|Q804A5|EPA2A_XENLA Embryonic polyadenylate-binding protein 2-A OS=Xenopus laevis
GN=Pabpn1l-a PE=1 SV=1
Length = 218
Score = 36.2 bits (82), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 37/66 (56%), Gaps = 3/66 (4%)
Query: 21 RQEMDWKLQHTGIVE--GKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKE 78
++E+D + + G V+ G D+ F I N IT++ D F+G P G AY++F ++
Sbjct: 87 KKEIDKRSVYVGNVDYGGTAQDLEAHFSSCGSI-NRITILCDKFSGHPKGYAYIEFAERN 145
Query: 79 TAELAL 84
+ + A+
Sbjct: 146 SVDAAV 151
>sp|Q28165|PABP2_BOVIN Polyadenylate-binding protein 2 OS=Bos taurus GN=PABPN1 PE=1 SV=3
Length = 306
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 36/66 (54%), Gaps = 3/66 (4%)
Query: 21 RQEMDWKLQHTGIVE--GKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKE 78
+ E D + + G V+ +++ F G + N +T++ D F+G P G AY++F DKE
Sbjct: 166 KMEADARSIYVGNVDYGATAEELEAHFHGCGSV-NRVTILCDKFSGHPKGFAYIEFSDKE 224
Query: 79 TAELAL 84
+ +L
Sbjct: 225 SVRTSL 230
>sp|Q86U42|PABP2_HUMAN Polyadenylate-binding protein 2 OS=Homo sapiens GN=PABPN1 PE=1 SV=3
Length = 306
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 36/66 (54%), Gaps = 3/66 (4%)
Query: 21 RQEMDWKLQHTGIVE--GKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKE 78
+ E D + + G V+ +++ F G + N +T++ D F+G P G AY++F DKE
Sbjct: 166 KMEADARSIYVGNVDYGATAEELEAHFHGCGSV-NRVTILCDKFSGHPKGFAYIEFSDKE 224
Query: 79 TAELAL 84
+ +L
Sbjct: 225 SVRTSL 230
>sp|Q8CCS6|PABP2_MOUSE Polyadenylate-binding protein 2 OS=Mus musculus GN=Pabpn1 PE=2 SV=3
Length = 302
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 36/66 (54%), Gaps = 3/66 (4%)
Query: 21 RQEMDWKLQHTGIVE--GKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKE 78
+ E D + + G V+ +++ F G + N +T++ D F+G P G AY++F DKE
Sbjct: 162 KMEADARSIYVGNVDYGATAEELEAHFHGCGSV-NRVTILCDKFSGHPKGFAYIEFSDKE 220
Query: 79 TAELAL 84
+ +L
Sbjct: 221 SVRTSL 226
>sp|Q9DDY9|PAB2A_XENLA Polyadenylate-binding protein 2-A OS=Xenopus laevis GN=pabpn1-a
PE=2 SV=1
Length = 296
Score = 34.3 bits (77), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 35/66 (53%), Gaps = 3/66 (4%)
Query: 21 RQEMDWKLQHTGIVE--GKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKE 78
+ E D + + G V+ +++ F G + N +T++ D F G P G AY++F DKE
Sbjct: 157 KMEADARSIYVGNVDYGATAEELEAHFHGCGSV-NRVTILCDKFTGHPKGFAYIEFCDKE 215
Query: 79 TAELAL 84
+ +L
Sbjct: 216 SVRTSL 221
>sp|Q7ZXB8|PAB2B_XENLA Polyadenylate-binding protein 2-B OS=Xenopus laevis GN=pabpn1-b
PE=2 SV=1
Length = 295
Score = 33.9 bits (76), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 35/66 (53%), Gaps = 3/66 (4%)
Query: 21 RQEMDWKLQHTGIVE--GKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKE 78
+ E D + + G V+ +++ F G + N +T++ D F G P G AY++F DKE
Sbjct: 156 KMEADARSIYVGNVDYGATAEELEAHFHGCGSV-NRVTILCDKFTGHPKGFAYIEFSDKE 214
Query: 79 TAELAL 84
+ +L
Sbjct: 215 SVRTSL 220
>sp|Q28ZX3|PABP2_DROPS Polyadenylate-binding protein 2 OS=Drosophila pseudoobscura
pseudoobscura GN=Pabp2 PE=3 SV=1
Length = 225
Score = 33.9 bits (76), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 52/109 (47%), Gaps = 14/109 (12%)
Query: 21 RQEMDWKLQHTGIVE--GKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKE 78
+QE+D + + G V+ +++ F G I N +T++ + +G P G AY++F KE
Sbjct: 90 KQEIDTRSVYVGNVDYGASAEELEAHFHGCGTI-NRVTILCNKADGHPKGFAYIEFGSKE 148
Query: 79 TAELALQKHKERIGHRYIFFTGHRYTVQHRAPRCETSIPVSSSTHKPGR 127
E AL ++ F G + V + T+ P S+T++ R
Sbjct: 149 FVETALAMNE-------TLFRGRQIKVMSK----RTNRPGLSTTNRFAR 186
>sp|Q6TY21|EPA2B_XENLA Embryonic polyadenylate-binding protein 2-B OS=Xenopus laevis
GN=Pabpn1l-b PE=1 SV=1
Length = 218
Score = 33.5 bits (75), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 36/66 (54%), Gaps = 3/66 (4%)
Query: 21 RQEMDWKLQHTGIVE--GKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKE 78
++E+D + + G V+ D+ F I N IT++ D F+G P G AY++F ++
Sbjct: 87 KKEIDKRSVYVGNVDYGSTAQDLEAHFSSCGSI-NRITILCDKFSGHPKGYAYIEFAERN 145
Query: 79 TAELAL 84
+ + A+
Sbjct: 146 SVDAAV 151
>sp|Q66JV4|R12BB_MOUSE RNA-binding protein 12B-B OS=Mus musculus GN=Rbm12b2 PE=1 SV=2
Length = 834
Score = 33.1 bits (74), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 34/59 (57%), Gaps = 3/59 (5%)
Query: 38 KDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQKHKERIGHRYI 96
+DD+ FF GL + +G+ L++ +GR G+A V+F A L+ H+ +G R+I
Sbjct: 167 EDDVRVFFSGLCV--DGVILLKH-HDGRNNGDAIVKFASCVDASGGLKCHRSFMGSRFI 222
>sp|Q7KNF2|PABP2_DROME Polyadenylate-binding protein 2 OS=Drosophila melanogaster GN=Pabp2
PE=2 SV=1
Length = 224
Score = 33.1 bits (74), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 52/109 (47%), Gaps = 14/109 (12%)
Query: 21 RQEMDWKLQHTGIVE--GKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKE 78
+QE+D + + G V+ +++ F G I N +T++ + +G P G AY++F KE
Sbjct: 90 KQEIDTRSVYVGNVDYGASAEELEAHFHGCGTI-NRVTILCNKADGHPKGFAYIEFGSKE 148
Query: 79 TAELALQKHKERIGHRYIFFTGHRYTVQHRAPRCETSIPVSSSTHKPGR 127
E AL ++ F G + V + T+ P S+T++ R
Sbjct: 149 FVETALAMNE-------TLFRGRQIKVMSK----RTNRPGLSTTNRFAR 186
>sp|Q80YR9|R12BA_MOUSE RNA-binding protein 12B-A OS=Mus musculus GN=Rbm12b1 PE=1 SV=2
Length = 836
Score = 33.1 bits (74), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 34/59 (57%), Gaps = 3/59 (5%)
Query: 38 KDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQKHKERIGHRYI 96
+DD+ FF GL + +G+ L++ +GR G+A V+F A L+ H+ +G R+I
Sbjct: 167 EDDVRVFFSGLCV--DGVILLKH-HDGRNNGDAIVKFASCVDASGGLKCHRSFMGSRFI 222
>sp|Q92804|RBP56_HUMAN TATA-binding protein-associated factor 2N OS=Homo sapiens GN=TAF15
PE=1 SV=1
Length = 592
Score = 32.3 bits (72), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 8/61 (13%)
Query: 32 GIVEG-KKDDIAQFFDGLEIISNG-------ITLVEDPFNGRPTGEAYVQFVDKETAELA 83
G+ EG D + +FF + II I L D G+P GEA V F D +A+ A
Sbjct: 240 GLGEGVSTDQVGEFFKQIGIIKTNKKTGKPMINLYTDKDTGKPKGEATVSFDDPPSAKAA 299
Query: 84 L 84
+
Sbjct: 300 I 300
>sp|Q6NVP7|PABP2_XENTR Polyadenylate-binding protein 2 OS=Xenopus tropicalis GN=pabpn1
PE=2 SV=1
Length = 296
Score = 32.3 bits (72), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 35/66 (53%), Gaps = 3/66 (4%)
Query: 21 RQEMDWKLQHTGIVE--GKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKE 78
+ E D + + G V+ +++ F G + N +T++ D + G P G AY++F DKE
Sbjct: 157 KMEADARSIYVGNVDYGATAEELEAHFHGCGSV-NRVTILCDKYTGHPKGFAYIEFSDKE 215
Query: 79 TAELAL 84
+ +L
Sbjct: 216 SVRTSL 221
>sp|Q5RFT7|RB12B_PONAB RNA-binding protein 12B OS=Pongo abelii GN=RBM12B PE=2 SV=1
Length = 761
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 33/59 (55%), Gaps = 3/59 (5%)
Query: 38 KDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQKHKERIGHRYI 96
+DD+ FF GL + +G+ ++ +GR G+A V+F A L+ H+ +G R+I
Sbjct: 168 EDDVRVFFSGLCV--DGVIFLKH-HDGRNNGDAIVKFASCVDASGGLKCHRSFMGSRFI 223
>sp|Q05196|PABP5_ARATH Polyadenylate-binding protein 5 OS=Arabidopsis thaliana GN=PAB5
PE=1 SV=3
Length = 682
Score = 31.2 bits (69), Expect = 2.0, Method: Composition-based stats.
Identities = 18/54 (33%), Positives = 26/54 (48%)
Query: 64 GRPTGEAYVQFVDKETAELALQKHKERIGHRYIFFTGHRYTVQHRAPRCETSIP 117
GR G +VQF +ETA+ A+ K + + F GH Q RA ++P
Sbjct: 183 GRSKGYGFVQFEKEETAQAAIDKLNGMLLNDKQVFVGHFVRRQDRARSESGAVP 236
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.138 0.424
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 59,939,971
Number of Sequences: 539616
Number of extensions: 2471327
Number of successful extensions: 5217
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 5027
Number of HSP's gapped (non-prelim): 162
length of query: 141
length of database: 191,569,459
effective HSP length: 105
effective length of query: 36
effective length of database: 134,909,779
effective search space: 4856752044
effective search space used: 4856752044
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)