Query psy3067
Match_columns 141
No_of_seqs 110 out of 1045
Neff 5.9
Searched_HMMs 46136
Date Sat Aug 17 00:50:47 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3067.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/3067hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4211|consensus 100.0 2.7E-31 5.9E-36 229.6 5.5 106 3-109 67-187 (510)
2 KOG1365|consensus 99.9 1E-24 2.3E-29 185.3 -0.3 104 4-108 225-366 (508)
3 KOG4211|consensus 99.9 1.1E-22 2.3E-27 176.5 7.0 96 26-125 12-120 (510)
4 KOG1365|consensus 99.9 4.2E-23 9E-28 175.6 0.5 103 3-106 120-245 (508)
5 PF14259 RRM_6: RNA recognitio 99.6 3.9E-16 8.5E-21 101.6 5.8 68 28-97 2-70 (70)
6 PLN03134 glycine-rich RNA-bind 99.6 1.2E-15 2.7E-20 114.6 7.5 77 26-103 36-113 (144)
7 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.6 3.3E-15 7.3E-20 123.2 5.6 100 26-126 5-107 (352)
8 PF00076 RRM_1: RNA recognitio 99.5 7.7E-15 1.7E-19 94.0 5.3 68 28-97 2-70 (70)
9 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.5 1.1E-14 2.4E-19 120.1 7.1 79 26-105 271-350 (352)
10 TIGR01659 sex-lethal sex-letha 99.5 5.8E-15 1.3E-19 124.9 5.3 100 26-126 109-211 (346)
11 TIGR01622 SF-CC1 splicing fact 99.5 4.6E-14 9.9E-19 120.6 5.2 101 25-126 90-204 (457)
12 PLN03120 nucleic acid binding 99.4 1.4E-13 3.1E-18 112.7 6.5 74 26-103 6-79 (260)
13 smart00360 RRM RNA recognition 99.4 5.4E-13 1.2E-17 83.2 7.2 68 30-98 2-70 (71)
14 TIGR01628 PABP-1234 polyadenyl 99.4 1.4E-13 3E-18 121.2 6.0 99 27-126 3-106 (562)
15 PLN03121 nucleic acid binding 99.4 9.5E-13 2.1E-17 106.8 6.2 74 26-103 7-80 (243)
16 KOG0149|consensus 99.4 3E-13 6.4E-18 109.2 3.2 76 26-103 14-90 (247)
17 TIGR01659 sex-lethal sex-letha 99.4 2.4E-12 5.2E-17 109.1 8.7 98 5-103 170-274 (346)
18 smart00362 RRM_2 RNA recogniti 99.3 3.2E-12 7E-17 80.1 6.2 69 27-98 2-71 (72)
19 TIGR01645 half-pint poly-U bin 99.3 1.3E-12 2.8E-17 117.7 5.6 99 27-126 110-222 (612)
20 TIGR01645 half-pint poly-U bin 99.3 3.4E-12 7.4E-17 115.0 8.0 99 4-103 169-283 (612)
21 cd00590 RRM RRM (RNA recogniti 99.3 5.8E-12 1.3E-16 79.3 6.7 71 27-99 2-73 (74)
22 COG0724 RNA-binding proteins ( 99.3 5.8E-12 1.3E-16 95.4 6.1 77 25-102 116-193 (306)
23 TIGR01648 hnRNP-R-Q heterogene 99.3 3.2E-12 6.9E-17 114.6 4.9 95 26-126 60-156 (578)
24 TIGR01642 U2AF_lg U2 snRNP aux 99.3 8.6E-12 1.9E-16 107.9 7.0 77 26-103 297-374 (509)
25 TIGR01628 PABP-1234 polyadenyl 99.3 6.9E-12 1.5E-16 110.5 6.0 77 27-105 288-365 (562)
26 TIGR01622 SF-CC1 splicing fact 99.2 1.5E-11 3.3E-16 105.2 7.1 76 26-102 188-264 (457)
27 KOG0125|consensus 99.2 1.2E-11 2.7E-16 104.0 5.9 75 27-104 99-174 (376)
28 KOG0108|consensus 99.2 5.3E-11 1.1E-15 103.7 6.1 78 25-103 19-97 (435)
29 smart00361 RRM_1 RNA recogniti 99.1 1.6E-10 3.4E-15 76.3 6.8 60 38-98 2-69 (70)
30 TIGR01648 hnRNP-R-Q heterogene 99.1 2.6E-10 5.7E-15 102.4 8.6 70 26-104 235-307 (578)
31 KOG4207|consensus 99.1 4.3E-11 9.2E-16 95.8 2.3 82 21-103 10-92 (256)
32 KOG0121|consensus 99.1 3.1E-10 6.8E-15 85.0 6.5 73 28-101 40-113 (153)
33 PLN03213 repressor of silencin 99.1 1.8E-10 3.8E-15 101.7 5.7 73 26-103 12-87 (759)
34 KOG4307|consensus 99.1 1.7E-10 3.6E-15 104.7 5.3 74 30-108 8-81 (944)
35 KOG4205|consensus 99.1 6.4E-11 1.4E-15 99.4 2.4 100 26-126 8-115 (311)
36 KOG0113|consensus 99.1 3.1E-10 6.8E-15 94.5 6.3 112 27-139 104-222 (335)
37 KOG0127|consensus 99.0 2.1E-10 4.5E-15 101.8 5.0 77 26-104 119-196 (678)
38 KOG0126|consensus 99.0 2.1E-11 4.6E-16 95.9 -2.2 76 26-102 37-113 (219)
39 KOG4205|consensus 99.0 1.8E-10 3.9E-15 96.7 2.4 102 4-106 67-178 (311)
40 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.0 1E-09 2.2E-14 95.9 6.5 71 27-104 5-78 (481)
41 KOG4307|consensus 99.0 1.5E-09 3.2E-14 98.6 7.2 70 30-100 873-943 (944)
42 KOG0122|consensus 98.9 1.5E-09 3.2E-14 88.5 5.7 81 21-102 186-267 (270)
43 KOG0127|consensus 98.9 1.8E-09 3.8E-14 96.0 5.2 76 26-102 294-376 (678)
44 KOG0145|consensus 98.9 1.2E-09 2.5E-14 90.3 3.8 100 26-126 43-145 (360)
45 TIGR01642 U2AF_lg U2 snRNP aux 98.9 9.9E-10 2.1E-14 95.1 3.5 76 26-101 177-257 (509)
46 TIGR01649 hnRNP-L_PTB hnRNP-L/ 98.9 4.4E-09 9.5E-14 92.0 6.4 72 26-103 277-350 (481)
47 PF13893 RRM_5: RNA recognitio 98.8 2.1E-08 4.5E-13 62.9 6.5 55 41-101 1-56 (56)
48 KOG0117|consensus 98.8 9.7E-09 2.1E-13 89.4 6.0 74 27-101 86-161 (506)
49 KOG0124|consensus 98.8 4.3E-09 9.3E-14 90.3 3.6 74 28-102 117-191 (544)
50 KOG0130|consensus 98.7 9.4E-09 2E-13 77.9 3.6 74 28-102 76-150 (170)
51 KOG0144|consensus 98.7 3E-08 6.6E-13 86.2 6.3 81 22-103 32-116 (510)
52 KOG0114|consensus 98.7 4.6E-08 1E-12 71.2 6.1 73 27-103 21-94 (124)
53 KOG0147|consensus 98.6 6E-08 1.3E-12 86.0 6.7 76 27-103 281-357 (549)
54 KOG0117|consensus 98.6 5E-08 1.1E-12 85.1 5.5 71 27-106 262-333 (506)
55 KOG0148|consensus 98.6 5E-08 1.1E-12 80.8 5.2 75 28-103 66-141 (321)
56 KOG0107|consensus 98.6 5E-08 1.1E-12 76.3 4.4 72 26-103 12-84 (195)
57 KOG0123|consensus 98.6 1.4E-07 2.9E-12 80.9 6.8 90 8-103 61-152 (369)
58 KOG0131|consensus 98.6 2.1E-08 4.5E-13 78.9 1.5 81 21-103 7-88 (203)
59 KOG4212|consensus 98.6 6.8E-08 1.5E-12 84.4 4.8 75 27-103 47-123 (608)
60 KOG0123|consensus 98.5 2.1E-07 4.5E-12 79.8 7.0 66 34-103 8-74 (369)
61 KOG0144|consensus 98.5 8.9E-08 1.9E-12 83.3 4.3 75 26-102 126-204 (510)
62 KOG0533|consensus 98.4 1.5E-06 3.2E-11 71.0 8.7 78 26-105 85-163 (243)
63 KOG4209|consensus 98.4 3.1E-07 6.7E-12 74.3 4.1 77 27-104 104-180 (231)
64 KOG4208|consensus 98.4 6.9E-07 1.5E-11 71.3 5.7 73 30-103 55-129 (214)
65 KOG0110|consensus 98.3 1.7E-06 3.7E-11 78.8 7.2 74 27-102 518-596 (725)
66 KOG0148|consensus 98.3 5.4E-07 1.2E-11 74.7 3.2 66 27-99 167-233 (321)
67 KOG0145|consensus 98.3 1.6E-06 3.5E-11 71.9 5.8 76 26-102 280-356 (360)
68 KOG0131|consensus 98.3 1.3E-06 2.8E-11 68.9 4.9 79 26-104 98-177 (203)
69 KOG0111|consensus 98.3 4.5E-07 9.7E-12 73.6 2.2 76 27-103 13-89 (298)
70 KOG0116|consensus 98.2 4.3E-06 9.3E-11 72.9 7.7 74 27-102 291-365 (419)
71 KOG4212|consensus 98.1 1.9E-06 4E-11 75.6 4.0 68 26-99 538-606 (608)
72 KOG1548|consensus 98.1 4.6E-06 1E-10 71.0 5.1 76 27-103 137-220 (382)
73 KOG0226|consensus 98.1 1.6E-06 3.5E-11 71.3 2.1 79 26-105 192-271 (290)
74 KOG0109|consensus 98.0 7.6E-06 1.6E-10 68.6 5.4 100 26-134 4-104 (346)
75 KOG0147|consensus 98.0 5.3E-06 1.1E-10 73.8 3.9 84 19-103 174-257 (549)
76 KOG0415|consensus 97.9 1E-05 2.3E-10 69.5 3.1 68 35-103 250-318 (479)
77 KOG0146|consensus 97.9 3.2E-05 7E-10 64.5 5.8 68 25-94 20-89 (371)
78 KOG0110|consensus 97.9 5.3E-06 1.2E-10 75.7 1.3 77 24-101 613-690 (725)
79 KOG0128|consensus 97.8 2.9E-06 6.3E-11 78.6 -0.7 70 22-92 665-735 (881)
80 KOG0105|consensus 97.7 3.5E-05 7.6E-10 61.3 4.0 72 27-102 9-81 (241)
81 KOG0109|consensus 97.7 6.7E-05 1.4E-09 63.0 5.1 77 26-112 80-157 (346)
82 KOG4849|consensus 97.7 2.2E-05 4.7E-10 67.5 2.0 78 26-103 82-161 (498)
83 KOG0124|consensus 97.6 5.5E-05 1.2E-09 65.4 4.2 97 5-102 176-288 (544)
84 KOG1995|consensus 97.6 3.7E-05 8.1E-10 65.5 2.7 80 24-103 66-153 (351)
85 KOG0146|consensus 97.6 6.3E-05 1.4E-09 62.8 3.4 76 28-105 289-366 (371)
86 KOG4210|consensus 97.5 5.8E-05 1.3E-09 62.8 1.9 74 29-103 190-263 (285)
87 KOG0153|consensus 97.4 0.00019 4.2E-09 61.3 4.2 66 30-102 234-301 (377)
88 KOG4661|consensus 97.2 0.00054 1.2E-08 62.2 5.0 75 27-102 408-483 (940)
89 KOG0132|consensus 97.2 0.00058 1.3E-08 63.4 5.1 68 27-101 424-492 (894)
90 KOG4206|consensus 96.9 0.002 4.3E-08 52.1 5.1 73 26-103 11-89 (221)
91 KOG0106|consensus 96.8 0.00039 8.5E-09 56.0 0.7 66 26-100 3-69 (216)
92 KOG0128|consensus 96.7 0.0015 3.3E-08 61.0 3.4 96 6-103 706-814 (881)
93 PF04059 RRM_2: RNA recognitio 96.6 0.0072 1.6E-07 43.0 6.1 65 27-92 4-71 (97)
94 KOG0129|consensus 96.6 0.005 1.1E-07 54.9 5.8 58 26-85 261-324 (520)
95 PF08777 RRM_3: RNA binding mo 96.5 0.0043 9.3E-08 44.4 4.4 65 30-101 7-77 (105)
96 KOG4454|consensus 96.5 0.0031 6.7E-08 51.4 3.8 74 26-102 11-85 (267)
97 KOG0120|consensus 96.4 0.0039 8.5E-08 55.7 4.4 79 25-104 290-369 (500)
98 KOG0151|consensus 96.1 0.013 2.8E-07 54.4 6.0 75 26-101 176-254 (877)
99 PF14605 Nup35_RRM_2: Nup53/35 96.0 0.019 4.2E-07 36.2 4.8 39 39-84 15-53 (53)
100 KOG4660|consensus 96.0 0.0046 1E-07 55.5 2.4 63 29-97 80-143 (549)
101 KOG1457|consensus 95.9 0.046 1E-06 44.9 7.6 78 24-102 34-116 (284)
102 KOG0106|consensus 95.5 0.0078 1.7E-07 48.5 1.8 67 28-103 103-170 (216)
103 PF11608 Limkain-b1: Limkain b 95.2 0.044 9.6E-07 38.5 4.8 65 28-102 6-75 (90)
104 PF10309 DUF2414: Protein of u 95.2 0.05 1.1E-06 35.8 4.6 48 28-85 9-60 (62)
105 KOG0120|consensus 95.0 0.045 9.7E-07 49.1 5.4 64 39-103 424-491 (500)
106 KOG0129|consensus 95.0 0.045 9.8E-07 49.0 5.1 93 8-102 341-452 (520)
107 PF05172 Nup35_RRM: Nup53/35/4 94.2 0.14 3E-06 36.5 5.4 64 37-102 18-90 (100)
108 KOG1190|consensus 94.0 0.15 3.3E-06 44.9 6.1 66 32-103 306-372 (492)
109 PF08952 DUF1866: Domain of un 93.8 0.2 4.2E-06 38.3 5.7 82 14-104 2-107 (146)
110 KOG2314|consensus 93.7 0.083 1.8E-06 48.2 4.1 53 40-94 80-133 (698)
111 KOG2202|consensus 93.3 0.051 1.1E-06 44.9 1.9 62 39-102 83-146 (260)
112 KOG1457|consensus 93.2 0.14 3E-06 42.2 4.3 55 26-85 212-266 (284)
113 PF08675 RNA_bind: RNA binding 92.7 0.32 7E-06 34.1 5.0 47 31-86 15-61 (87)
114 KOG1548|consensus 92.4 0.46 1E-05 41.0 6.6 59 40-103 292-351 (382)
115 KOG1190|consensus 92.0 0.39 8.6E-06 42.4 5.7 68 30-102 420-489 (492)
116 KOG0115|consensus 91.9 0.17 3.7E-06 42.0 3.2 93 26-126 33-130 (275)
117 COG5175 MOT2 Transcriptional r 91.6 0.39 8.5E-06 41.7 5.2 66 31-99 121-198 (480)
118 KOG4285|consensus 87.0 1.4 3E-05 37.6 5.1 58 39-103 211-269 (350)
119 PF03880 DbpA: DbpA RNA bindin 86.2 2.6 5.7E-05 27.8 5.3 57 36-101 13-74 (74)
120 KOG4210|consensus 84.0 0.56 1.2E-05 39.1 1.4 75 26-101 90-165 (285)
121 KOG0105|consensus 82.8 1.1 2.4E-05 36.1 2.5 72 21-101 113-189 (241)
122 KOG1855|consensus 81.9 0.73 1.6E-05 40.9 1.4 75 12-87 216-306 (484)
123 KOG1456|consensus 81.4 3.7 8E-05 36.2 5.4 60 31-92 413-473 (494)
124 KOG4206|consensus 79.4 5.6 0.00012 32.3 5.5 51 29-85 151-201 (221)
125 PF03468 XS: XS domain; Inter 79.4 2.1 4.5E-05 31.2 2.8 50 37-90 30-80 (116)
126 KOG1996|consensus 76.4 2.7 5.8E-05 35.9 3.0 57 38-97 300-360 (378)
127 KOG4676|consensus 71.9 4.5 9.8E-05 35.8 3.4 73 29-102 12-87 (479)
128 KOG2193|consensus 71.5 3.7 8.1E-05 36.7 2.8 73 25-104 2-76 (584)
129 KOG2591|consensus 71.2 5 0.00011 36.9 3.6 58 30-96 181-244 (684)
130 PF07576 BRAP2: BRCA1-associat 68.6 25 0.00055 25.3 6.3 59 31-92 20-80 (110)
131 PF15513 DUF4651: Domain of un 66.3 8.8 0.00019 25.3 3.1 14 39-52 9-22 (62)
132 KOG1456|consensus 65.3 37 0.00081 30.1 7.6 69 30-104 293-363 (494)
133 KOG3152|consensus 62.7 2.4 5.3E-05 35.3 -0.0 68 28-96 78-158 (278)
134 PF14111 DUF4283: Domain of un 59.1 4.6 0.0001 29.2 0.9 65 36-106 29-94 (153)
135 PLN00039 photosystem II reacti 57.5 11 0.00023 27.6 2.6 38 42-82 3-42 (111)
136 CHL00128 psbW photosystem II p 57.2 15 0.00033 26.9 3.3 39 42-83 4-44 (113)
137 TIGR03047 PS_II_psb28 photosys 54.6 21 0.00045 26.0 3.6 37 43-82 2-40 (109)
138 PF03467 Smg4_UPF3: Smg-4/UPF3 51.8 5.8 0.00012 30.7 0.4 67 23-89 6-78 (176)
139 PF02714 DUF221: Domain of unk 51.4 21 0.00045 29.2 3.7 31 70-101 1-31 (325)
140 PF09702 Cas_Csa5: CRISPR-asso 50.8 4.3 9.3E-05 29.4 -0.4 36 9-48 50-85 (105)
141 cd06398 PB1_Joka2 The PB1 doma 49.8 85 0.0018 21.8 7.0 61 33-100 26-86 (91)
142 PF15023 DUF4523: Protein of u 49.4 53 0.0012 25.4 5.3 63 30-103 96-158 (166)
143 KOG2135|consensus 48.5 9.3 0.0002 34.5 1.2 60 37-103 386-445 (526)
144 PRK13610 photosystem II reacti 48.0 19 0.0004 26.4 2.5 43 37-82 5-49 (113)
145 PF11767 SET_assoc: Histone ly 47.8 78 0.0017 20.8 5.9 47 36-92 12-59 (66)
146 PRK13611 photosystem II reacti 43.0 22 0.00048 25.7 2.3 35 42-79 4-39 (104)
147 PF04847 Calcipressin: Calcipr 41.2 65 0.0014 25.2 4.9 60 37-103 8-70 (184)
148 PRK13612 photosystem II reacti 41.1 21 0.00045 26.2 1.9 38 42-82 6-45 (113)
149 PF08671 SinI: Anti-repressor 40.7 15 0.00032 20.7 0.9 25 22-46 3-27 (30)
150 KOG3424|consensus 40.3 36 0.00079 25.4 3.1 46 35-82 34-84 (132)
151 PF11215 DUF3010: Protein of u 38.9 76 0.0017 24.0 4.7 40 32-74 37-83 (138)
152 KOG0112|consensus 36.3 9.5 0.0002 36.8 -0.6 64 27-92 375-439 (975)
153 KOG2068|consensus 35.8 34 0.00074 29.4 2.7 71 28-100 81-159 (327)
154 PF03912 Psb28: Psb28 protein; 33.2 41 0.00089 24.5 2.4 36 43-81 2-39 (108)
155 PF07292 NID: Nmi/IFP 35 domai 32.8 63 0.0014 22.5 3.2 33 70-102 1-35 (88)
156 PF14026 DUF4242: Protein of u 32.5 76 0.0016 21.2 3.5 61 28-89 4-69 (77)
157 KOG0112|consensus 32.3 53 0.0012 32.0 3.6 68 28-102 459-529 (975)
158 PTZ00071 40S ribosomal protein 31.7 91 0.002 23.4 4.1 46 35-81 35-85 (132)
159 PRK00766 hypothetical protein; 31.0 15 0.00032 29.2 -0.3 37 46-87 83-121 (194)
160 KOG0804|consensus 28.2 1.3E+02 0.0028 27.3 5.0 82 8-92 51-141 (493)
161 PRK01310 hypothetical protein; 26.9 1.2E+02 0.0026 21.7 3.9 45 38-85 54-99 (104)
162 PF14657 Integrase_AP2: AP2-li 25.2 1.3E+02 0.0028 17.7 3.3 29 58-86 8-36 (46)
163 PRK01178 rps24e 30S ribosomal 25.2 1.6E+02 0.0034 20.9 4.2 46 35-82 30-80 (99)
164 PF08503 DapH_N: Tetrahydrodip 24.9 85 0.0018 21.7 2.7 34 68-101 41-74 (83)
165 PF14881 Tubulin_3: Tubulin do 24.7 46 0.00099 25.8 1.5 32 37-70 60-91 (180)
166 TIGR01124 ilvA_2Cterm threonin 23.4 90 0.0019 28.0 3.3 62 37-99 429-490 (499)
167 PF03439 Spt5-NGN: Early trans 23.3 85 0.0018 21.1 2.5 24 66-89 43-66 (84)
168 PF05573 NosL: NosL; InterPro 23.0 65 0.0014 23.9 2.0 24 65-88 112-135 (149)
169 PRK14548 50S ribosomal protein 22.5 1.6E+02 0.0034 20.3 3.7 51 32-85 28-79 (84)
170 PF02762 Cbl_N3: CBL proto-onc 22.2 87 0.0019 21.7 2.3 33 70-103 4-36 (86)
171 PF05891 Methyltransf_PK: AdoM 22.1 35 0.00075 27.7 0.4 49 12-60 104-161 (218)
172 smart00359 PUA Putative RNA-bi 21.1 1.6E+02 0.0036 18.3 3.4 26 53-79 34-59 (77)
173 COG1019 Predicted nucleotidylt 21.0 98 0.0021 24.0 2.6 98 20-124 40-143 (158)
174 COG0529 CysC Adenylylsulfate k 20.9 2.2E+02 0.0048 22.8 4.7 66 18-103 56-130 (197)
175 PRK00642 inorganic pyrophospha 20.7 96 0.0021 24.8 2.7 39 37-86 156-195 (205)
176 PRK12865 YciI-like protein; Re 20.6 2.9E+02 0.0062 18.8 4.9 41 63-103 47-90 (97)
177 COG0151 PurD Phosphoribosylami 20.2 4.5E+02 0.0097 23.5 6.9 97 37-139 126-229 (428)
No 1
>KOG4211|consensus
Probab=99.97 E-value=2.7e-31 Score=229.63 Aligned_cols=106 Identities=43% Similarity=0.700 Sum_probs=101.0
Q ss_pred CCCcCCCCceeEEEEEecHHHHHHHHH---------------hcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcc
Q psy3067 3 HCRTGEVSDRYIEVFKVRRQEMDWKLQ---------------HTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPT 67 (141)
Q Consensus 3 ~~~~~~ig~RyIEv~~~~~~d~~~~~~---------------~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~ 67 (141)
+++|.+||+||||||+++..|+.|+++ |||||+||++||.+||++|.|+.++|.++.| ..||++
T Consensus 67 kkdR~~mg~RYIEVf~~~~~e~d~~~~~~g~~s~~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d-~rgR~t 145 (510)
T KOG4211|consen 67 KKDRESMGHRYIEVFTAGGAEADWVMRPGGPNSSANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMD-QRGRPT 145 (510)
T ss_pred HhhHHHhCCceEEEEccCCccccccccCCCCCCCCCCceEEecCCCccCcHHHHHHHhcCCcccccceeeecc-CCCCcc
Confidence 589999999999999999999999877 5899999999999999999999988999999 899999
Q ss_pred eeeEEEeCCHHHHHHHHHHcCCcCCCeeEEEEecchhhcccC
Q psy3067 68 GEAYVQFVDKETAELALQKHKERIGHRYIFFTGHRYTVQHRA 109 (141)
Q Consensus 68 G~afV~F~s~e~a~~AL~k~~~~i~~RyIeV~~ss~~~~~~~ 109 (141)
|+|||+|+|++.|++||++|++.|++||||||+|+..|.+++
T Consensus 146 GEAfVqF~sqe~ae~Al~rhre~iGhRYIEvF~Ss~~e~~~~ 187 (510)
T KOG4211|consen 146 GEAFVQFESQESAEIALGRHRENIGHRYIEVFRSSRAEVKRA 187 (510)
T ss_pred cceEEEecCHHHHHHHHHHHHHhhccceEEeehhHHHHHHhh
Confidence 999999999999999999999999999999999999887764
No 2
>KOG1365|consensus
Probab=99.89 E-value=1e-24 Score=185.35 Aligned_cols=104 Identities=30% Similarity=0.443 Sum_probs=95.4
Q ss_pred CCcCCCCceeEEEEEecHHHHHHHHHh-----------------------------------cCCCCCCHHHHHhhcccC
Q psy3067 4 CRTGEVSDRYIEVFKVRRQEMDWKLQH-----------------------------------TGIVEGKKDDIAQFFDGL 48 (141)
Q Consensus 4 ~~~~~ig~RyIEv~~~~~~d~~~~~~~-----------------------------------gLp~s~te~DI~~FFs~~ 48 (141)
+||+.||+||||||.+|.+|+++++++ ||||+++.+||.+||.++
T Consensus 225 khrq~iGqRYIElFRSTaaEvqqvlnr~~s~pLi~~~~sp~~p~~p~~~~p~~~~kdcvRLRGLPy~AtvEdIL~FlgdF 304 (508)
T KOG1365|consen 225 KHRQNIGQRYIELFRSTAAEVQQVLNREVSEPLIPGLTSPLLPGGPARLVPPTRSKDCVRLRGLPYEATVEDILDFLGDF 304 (508)
T ss_pred HHHHHHhHHHHHHHHHhHHHHHHHHHhhccccccCCCCCCCCCCCccccCCCCCCCCeeEecCCChhhhHHHHHHHHHHH
Confidence 689999999999999999999988763 899999999999999998
Q ss_pred --CcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHHH-cCCcCCCeeEEEEecchhhccc
Q psy3067 49 --EIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQK-HKERIGHRYIFFTGHRYTVQHR 108 (141)
Q Consensus 49 --~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~k-~~~~i~~RyIeV~~ss~~~~~~ 108 (141)
.|.-.+||++.+ ..|+++|+|||+|.++|+|..|.++ |+++|..|||||++|+.+|+++
T Consensus 305 a~~i~f~gVHmv~N-~qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEvfp~S~eeln~ 366 (508)
T KOG1365|consen 305 ATDIRFQGVHMVLN-GQGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEVFPCSVEELNE 366 (508)
T ss_pred hhhcccceeEEEEc-CCCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEEeeccHHHHHH
Confidence 444468999999 9999999999999999999999986 7888899999999999988774
No 3
>KOG4211|consensus
Probab=99.87 E-value=1.1e-22 Score=176.46 Aligned_cols=96 Identities=29% Similarity=0.422 Sum_probs=79.8
Q ss_pred HHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHHHcCCcCCCeeEEEEecchhh
Q psy3067 26 WKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQKHKERIGHRYIFFTGHRYTV 105 (141)
Q Consensus 26 ~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~k~~~~i~~RyIeV~~ss~~~ 105 (141)
.|-.|||||+||++||++||++|+|-+ +.+.. .+||++|+|||+|.++|++++||++|+..|++||||||.+..++
T Consensus 12 ~vr~rGLPwsat~~ei~~Ff~~~~I~~--~~~~r--~~Gr~sGeA~Ve~~seedv~~AlkkdR~~mg~RYIEVf~~~~~e 87 (510)
T KOG4211|consen 12 EVRLRGLPWSATEKEILDFFSNCGIEN--LEIPR--RNGRPSGEAYVEFTSEEDVEKALKKDRESMGHRYIEVFTAGGAE 87 (510)
T ss_pred EEEecCCCccccHHHHHHHHhcCceeE--EEEec--cCCCcCcceEEEeechHHHHHHHHhhHHHhCCceEEEEccCCcc
Confidence 344589999999999999999999964 44444 68999999999999999999999999999999999999997655
Q ss_pred ccc-----CCCC------C--CCCcccCCCCCC
Q psy3067 106 QHR-----APRC------E--TSIPVSSSTHKP 125 (141)
Q Consensus 106 ~~~-----~~~~------~--~~lp~~~~~~~~ 125 (141)
... .++. | .||||+|+++.+
T Consensus 88 ~d~~~~~~g~~s~~~d~vVRLRGLPfscte~dI 120 (510)
T KOG4211|consen 88 ADWVMRPGGPNSSANDGVVRLRGLPFSCTEEDI 120 (510)
T ss_pred ccccccCCCCCCCCCCceEEecCCCccCcHHHH
Confidence 332 2222 2 399999998754
No 4
>KOG1365|consensus
Probab=99.86 E-value=4.2e-23 Score=175.64 Aligned_cols=103 Identities=30% Similarity=0.479 Sum_probs=90.3
Q ss_pred CCCcCCCCceeEEEEEecHHHHHHH--------------------HHhcCCCCCCHHHHHhhccc-CCcc--cccEEEee
Q psy3067 3 HCRTGEVSDRYIEVFKVRRQEMDWK--------------------LQHTGIVEGKKDDIAQFFDG-LEII--SNGITLVE 59 (141)
Q Consensus 3 ~~~~~~ig~RyIEv~~~~~~d~~~~--------------------~~~gLp~s~te~DI~~FFs~-~~iv--~~~I~i~~ 59 (141)
+|||++||.||||||+.+.+|+..+ -.|||||+||+.||++||.. |.+. .++|.++.
T Consensus 120 kRhkhh~g~ryievYka~ge~f~~iagg~s~e~~~flsk~~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~ 199 (508)
T KOG1365|consen 120 KRHKHHMGTRYIEVYKATGEEFLKIAGGTSNEAAPFLSKENQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVT 199 (508)
T ss_pred HhhhhhccCCceeeeccCchhheEecCCccccCCCCCCcccceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEE
Confidence 6899999999999999999997644 12699999999999999973 3322 25688888
Q ss_pred cCCCCCcceeeEEEeCCHHHHHHHHHHcCCcCCCeeEEEEecchhhc
Q psy3067 60 DPFNGRPTGEAYVQFVDKETAELALQKHKERIGHRYIFFTGHRYTVQ 106 (141)
Q Consensus 60 d~~~Gr~~G~afV~F~s~e~a~~AL~k~~~~i~~RyIeV~~ss~~~~ 106 (141)
. .+||+||+|||.|+.+++|+.||.||++.||.||||+|.|+..|.
T Consensus 200 r-pdgrpTGdAFvlfa~ee~aq~aL~khrq~iGqRYIElFRSTaaEv 245 (508)
T KOG1365|consen 200 R-PDGRPTGDAFVLFACEEDAQFALRKHRQNIGQRYIELFRSTAAEV 245 (508)
T ss_pred C-CCCCcccceEEEecCHHHHHHHHHHHHHHHhHHHHHHHHHhHHHH
Confidence 7 799999999999999999999999999999999999999987664
No 5
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.64 E-value=3.9e-16 Score=101.56 Aligned_cols=68 Identities=22% Similarity=0.376 Sum_probs=59.8
Q ss_pred HHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHHH-cCCcCCCeeEE
Q psy3067 28 LQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQK-HKERIGHRYIF 97 (141)
Q Consensus 28 ~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~k-~~~~i~~RyIe 97 (141)
+.+|||++++++||++||+.++.+ ..|++..+ .+|+++|+|||+|.|+++|++|++. ++..++||+|+
T Consensus 2 ~i~nlp~~~~~~~l~~~f~~~g~v-~~v~~~~~-~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 2 YISNLPPSTTEEDLRNFFSRFGPV-EKVRLIKN-KDGQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEESSTTT--HHHHHHHCTTSSBE-EEEEEEES-TTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred EEeCCCCCCCHHHHHHHHHhcCCc-ceEEEEee-eccccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 468999999999999999999877 47999999 5599999999999999999999997 45999999985
No 6
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.62 E-value=1.2e-15 Score=114.61 Aligned_cols=77 Identities=16% Similarity=0.141 Sum_probs=70.9
Q ss_pred HHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEecch
Q psy3067 26 WKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGHRY 103 (141)
Q Consensus 26 ~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~ss~ 103 (141)
.++++||||++||+||+++|+.|+.+. .|.|+.|+.+|+++|+|||+|.++++|++||+ +|+..|++|.|.|..+..
T Consensus 36 ~lfVgnL~~~~te~~L~~~F~~~G~I~-~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~a~~ 113 (144)
T PLN03134 36 KLFIGGLSWGTDDASLRDAFAHFGDVV-DAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPAND 113 (144)
T ss_pred EEEEeCCCCCCCHHHHHHHHhcCCCeE-EEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEeCCc
Confidence 467889999999999999999997763 69999998899999999999999999999997 699999999999998865
No 7
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.56 E-value=3.3e-15 Score=123.19 Aligned_cols=100 Identities=20% Similarity=0.255 Sum_probs=83.1
Q ss_pred HHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEecchh
Q psy3067 26 WKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGHRYT 104 (141)
Q Consensus 26 ~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~ss~~ 104 (141)
.++++|||+++||+||+++|+.||.+. +|+|+.|+.+|+++|+|||+|.++++|++||+ +|+..|++|.|.|..+...
T Consensus 5 ~l~V~nLp~~~~e~~l~~~F~~~G~i~-~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~~~ 83 (352)
T TIGR01661 5 NLIVNYLPQTMTQEEIRSLFTSIGEIE-SCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYARPS 83 (352)
T ss_pred EEEEeCCCCCCCHHHHHHHHHccCCEE-EEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeeccc
Confidence 467899999999999999999998774 79999998899999999999999999999997 6999999999999877653
Q ss_pred hc--ccCCCCCCCCcccCCCCCCC
Q psy3067 105 VQ--HRAPRCETSIPVSSSTHKPG 126 (141)
Q Consensus 105 ~~--~~~~~~~~~lp~~~~~~~~~ 126 (141)
.. ....-++.+||.+.+.+.++
T Consensus 84 ~~~~~~~~l~v~~l~~~~~~~~l~ 107 (352)
T TIGR01661 84 SDSIKGANLYVSGLPKTMTQHELE 107 (352)
T ss_pred ccccccceEEECCccccCCHHHHH
Confidence 22 12223367888887765544
No 8
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.55 E-value=7.7e-15 Score=94.01 Aligned_cols=68 Identities=25% Similarity=0.399 Sum_probs=63.1
Q ss_pred HHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEE
Q psy3067 28 LQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIF 97 (141)
Q Consensus 28 ~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIe 97 (141)
+++|||+++|++||+++|+.++.+ ..+.+..+ .+|++.|+|||+|.+.++|++|++ .|+..+++|.|.
T Consensus 2 ~v~nlp~~~t~~~l~~~f~~~g~i-~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 2 YVGNLPPDVTEEELRDFFSQFGKI-ESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEESETTTSSHHHHHHHHHTTSTE-EEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred EEcCCCCcCCHHHHHHHHHHhhhc-cccccccc-ccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 568999999999999999999888 47999998 899999999999999999999999 799999999873
No 9
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.54 E-value=1.1e-14 Score=120.08 Aligned_cols=79 Identities=11% Similarity=0.179 Sum_probs=72.2
Q ss_pred HHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEecchh
Q psy3067 26 WKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGHRYT 104 (141)
Q Consensus 26 ~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~ss~~ 104 (141)
.++++|||+++++++|+++|+.++.+. .|+|+.|+.+|+++|+|||+|.+.++|.+|++ +|+..++||.|.|.-.+..
T Consensus 271 ~lfV~NL~~~~~e~~L~~~F~~fG~v~-~v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai~~lnG~~~~gr~i~V~~~~~~ 349 (352)
T TIGR01661 271 CIFVYNLSPDTDETVLWQLFGPFGAVQ-NVKIIRDLTTNQCKGYGFVSMTNYDEAAMAILSLNGYTLGNRVLQVSFKTNK 349 (352)
T ss_pred EEEEeCCCCCCCHHHHHHHHHhCCCeE-EEEEeEcCCCCCccceEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEccCC
Confidence 388999999999999999999998774 69999997799999999999999999999998 7999999999999887653
Q ss_pred h
Q psy3067 105 V 105 (141)
Q Consensus 105 ~ 105 (141)
.
T Consensus 350 ~ 350 (352)
T TIGR01661 350 A 350 (352)
T ss_pred C
Confidence 3
No 10
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.54 E-value=5.8e-15 Score=124.93 Aligned_cols=100 Identities=12% Similarity=0.122 Sum_probs=84.7
Q ss_pred HHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEecchh
Q psy3067 26 WKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGHRYT 104 (141)
Q Consensus 26 ~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~ss~~ 104 (141)
.|++++|||++|++||+++|+.++.|. +|+|+.|+.+|+++|+|||+|.++++|++||+ +|+..+.+|.|.|..+...
T Consensus 109 ~LfVgnLp~~~te~~L~~lF~~~G~V~-~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~~a~p~ 187 (346)
T TIGR01659 109 NLIVNYLPQDMTDRELYALFRTIGPIN-TCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVSYARPG 187 (346)
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCEE-EEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeeeccccc
Confidence 578899999999999999999997663 69999998899999999999999999999997 6999999999999887652
Q ss_pred hc--ccCCCCCCCCcccCCCCCCC
Q psy3067 105 VQ--HRAPRCETSIPVSSSTHKPG 126 (141)
Q Consensus 105 ~~--~~~~~~~~~lp~~~~~~~~~ 126 (141)
.. ....-++.+||.+.+++.|+
T Consensus 188 ~~~~~~~~lfV~nLp~~vtee~L~ 211 (346)
T TIGR01659 188 GESIKDTNLYVTNLPRTITDDQLD 211 (346)
T ss_pred ccccccceeEEeCCCCcccHHHHH
Confidence 22 12223467999888887665
No 11
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.47 E-value=4.6e-14 Score=120.65 Aligned_cols=101 Identities=18% Similarity=0.232 Sum_probs=83.2
Q ss_pred HHHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHHHcCCcCCCeeEEEEecchh
Q psy3067 25 DWKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQKHKERIGHRYIFFTGHRYT 104 (141)
Q Consensus 25 ~~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~k~~~~i~~RyIeV~~ss~~ 104 (141)
..|+++|||+++|++||++||+.++.|. +|+|+.|+.+|+++|+|||+|.+.++|++||.+++..+.++.|.|..+...
T Consensus 90 ~~l~V~nlp~~~~~~~l~~~F~~~G~v~-~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~l~g~~~~g~~i~v~~~~~~ 168 (457)
T TIGR01622 90 RTVFVLQLALKARERDLYEFFSKVGKVR-DVQCIKDRNSRRSKGVAYVEFYDVESVIKALALTGQMLLGRPIIVQSSQAE 168 (457)
T ss_pred cEEEEeCCCCCCCHHHHHHHHHhcCCee-EEEEeecCCCCCcceEEEEEECCHHHHHHHHHhCCCEECCeeeEEeecchh
Confidence 3588899999999999999999998773 799999988999999999999999999999999999999999999876532
Q ss_pred hcccC----------C----CCCCCCcccCCCCCCC
Q psy3067 105 VQHRA----------P----RCETSIPVSSSTHKPG 126 (141)
Q Consensus 105 ~~~~~----------~----~~~~~lp~~~~~~~~~ 126 (141)
..... + =++.+||.+.+.+.+.
T Consensus 169 ~~~~~~~~~~~~~~~p~~~~l~v~nl~~~~te~~l~ 204 (457)
T TIGR01622 169 KNRAAKAATHQPGDIPNFLKLYVGNLHFNITEQELR 204 (457)
T ss_pred hhhhhhcccccCCCCCCCCEEEEcCCCCCCCHHHHH
Confidence 11110 1 1156888887776654
No 12
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.45 E-value=1.4e-13 Score=112.65 Aligned_cols=74 Identities=22% Similarity=0.169 Sum_probs=66.6
Q ss_pred HHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHHHcCCcCCCeeEEEEecch
Q psy3067 26 WKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQKHKERIGHRYIFFTGHRY 103 (141)
Q Consensus 26 ~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~k~~~~i~~RyIeV~~ss~ 103 (141)
.++++||||++|++||++||+.||-+. .|.|+.|+ .++|+|||+|.++++|+.||.+|+..|++|.|.|.++..
T Consensus 6 tVfVgNLs~~tTE~dLrefFS~~G~I~-~V~I~~d~---~~~GfAFVtF~d~eaAe~AllLnG~~l~gr~V~Vt~a~~ 79 (260)
T PLN03120 6 TVKVSNVSLKATERDIKEFFSFSGDIE-YVEMQSEN---ERSQIAYVTFKDPQGAETALLLSGATIVDQSVTITPAED 79 (260)
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCeE-EEEEeecC---CCCCEEEEEeCcHHHHHHHHHhcCCeeCCceEEEEeccC
Confidence 467899999999999999999998773 69999883 357999999999999999999999999999999999753
No 13
>smart00360 RRM RNA recognition motif.
Probab=99.43 E-value=5.4e-13 Score=83.20 Aligned_cols=68 Identities=24% Similarity=0.359 Sum_probs=60.9
Q ss_pred hcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEE
Q psy3067 30 HTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFF 98 (141)
Q Consensus 30 ~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV 98 (141)
+|||++++++||+++|+.++.+. .+.+..++.+++++|+|||+|.+.++|.+|++ .++..++++.|.|
T Consensus 2 ~~l~~~~~~~~l~~~f~~~g~v~-~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v 70 (71)
T smart00360 2 GNLPPDVTEEELRELFSKFGKIE-SVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKV 70 (71)
T ss_pred CCCCcccCHHHHHHHHHhhCCEe-EEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEe
Confidence 68999999999999999998663 58888886679999999999999999999998 4778899999876
No 14
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.43 E-value=1.4e-13 Score=121.21 Aligned_cols=99 Identities=16% Similarity=0.140 Sum_probs=80.6
Q ss_pred HHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEecchhh
Q psy3067 27 KLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGHRYTV 105 (141)
Q Consensus 27 ~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~ss~~~ 105 (141)
++++|||+++||+||+++|+.++.| .+|+|+.|+.+++++|+|||+|.+.++|++||+ .|...+.+|.|.|..+..+.
T Consensus 3 l~VgnLp~~vte~~L~~~F~~~G~v-~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~~~~ 81 (562)
T TIGR01628 3 LYVGDLDPDVTEAKLYDLFKPFGPV-LSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQRDP 81 (562)
T ss_pred EEEeCCCCCCCHHHHHHHHHhcCCE-EEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeecccccc
Confidence 5779999999999999999999876 369999997789999999999999999999997 58888999999998775432
Q ss_pred cccC----CCCCCCCcccCCCCCCC
Q psy3067 106 QHRA----PRCETSIPVSSSTHKPG 126 (141)
Q Consensus 106 ~~~~----~~~~~~lp~~~~~~~~~ 126 (141)
..+. .=++.+||.+.+.+.+.
T Consensus 82 ~~~~~~~~~vfV~nLp~~~~~~~L~ 106 (562)
T TIGR01628 82 SLRRSGVGNIFVKNLDKSVDNKALF 106 (562)
T ss_pred cccccCCCceEEcCCCccCCHHHHH
Confidence 2221 12367888776665443
No 15
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.36 E-value=9.5e-13 Score=106.79 Aligned_cols=74 Identities=19% Similarity=0.192 Sum_probs=66.9
Q ss_pred HHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHHHcCCcCCCeeEEEEecch
Q psy3067 26 WKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQKHKERIGHRYIFFTGHRY 103 (141)
Q Consensus 26 ~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~k~~~~i~~RyIeV~~ss~ 103 (141)
.++++||+|++|++||++||+.||-+. .|+|+.| ++..|+|||+|.++++++.||.+++..|.++.|.|.++..
T Consensus 7 TV~V~NLS~~tTE~dLrefFS~~G~I~-~V~I~~D---~et~gfAfVtF~d~~aaetAllLnGa~l~d~~I~It~~~~ 80 (243)
T PLN03121 7 TAEVTNLSPKATEKDVYDFFSHCGAIE-HVEIIRS---GEYACTAYVTFKDAYALETAVLLSGATIVDQRVCITRWGQ 80 (243)
T ss_pred EEEEecCCCCCCHHHHHHHHHhcCCeE-EEEEecC---CCcceEEEEEECCHHHHHHHHhcCCCeeCCceEEEEeCcc
Confidence 357789999999999999999998774 7999988 5566899999999999999999999999999999998764
No 16
>KOG0149|consensus
Probab=99.36 E-value=3e-13 Score=109.17 Aligned_cols=76 Identities=22% Similarity=0.279 Sum_probs=69.8
Q ss_pred HHHHhcCCCCCCHHHHHhhcccC-CcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHHHcCCcCCCeeEEEEecch
Q psy3067 26 WKLQHTGIVEGKKDDIAQFFDGL-EIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQKHKERIGHRYIFFTGHRY 103 (141)
Q Consensus 26 ~~~~~gLp~s~te~DI~~FFs~~-~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~k~~~~i~~RyIeV~~ss~ 103 (141)
+||++||||.++.++++++|+.+ +|++ +.++.|+.+||++|++||.|.+.|+|.+|.+--...|+||.-.+..++-
T Consensus 14 KifVggL~w~T~~~~l~~yFeqfGeI~e--avvitd~~t~rskGyGfVTf~d~~aa~rAc~dp~piIdGR~aNcnlA~l 90 (247)
T KOG0149|consen 14 KIFVGGLAWETHKETLRRYFEQFGEIVE--AVVITDKNTGRSKGYGFVTFRDAEAATRACKDPNPIIDGRKANCNLASL 90 (247)
T ss_pred EEEEcCcccccchHHHHHHHHHhCceEE--EEEEeccCCccccceeeEEeecHHHHHHHhcCCCCcccccccccchhhh
Confidence 57889999999999999999999 5665 8888998999999999999999999999999999999999988887764
No 17
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.36 E-value=2.4e-12 Score=109.07 Aligned_cols=98 Identities=16% Similarity=0.135 Sum_probs=79.0
Q ss_pred CcCCCCceeEEEEEecHH--H--HHHHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHH
Q psy3067 5 RTGEVSDRYIEVFKVRRQ--E--MDWKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETA 80 (141)
Q Consensus 5 ~~~~ig~RyIEv~~~~~~--d--~~~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a 80 (141)
+...+..|-|.|-..+.. + --.|+++|||+++|++||+++|+.|+.+. .|.|+.|+.+|+++|+|||+|++.++|
T Consensus 170 nG~~l~gr~i~V~~a~p~~~~~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~-~v~i~~d~~tg~~kG~aFV~F~~~e~A 248 (346)
T TIGR01659 170 NGITVRNKRLKVSYARPGGESIKDTNLYVTNLPRTITDDQLDTIFGKYGQIV-QKNILRDKLTGTPRGVAFVRFNKREEA 248 (346)
T ss_pred CCCccCCceeeeecccccccccccceeEEeCCCCcccHHHHHHHHHhcCCEE-EEEEeecCCCCccceEEEEEECCHHHH
Confidence 455666677777654331 1 12578899999999999999999997663 599999977999999999999999999
Q ss_pred HHHHH-HcCCcCCC--eeEEEEecch
Q psy3067 81 ELALQ-KHKERIGH--RYIFFTGHRY 103 (141)
Q Consensus 81 ~~AL~-k~~~~i~~--RyIeV~~ss~ 103 (141)
++||+ +|+..+.+ +.|.|..+..
T Consensus 249 ~~Ai~~lng~~~~g~~~~l~V~~a~~ 274 (346)
T TIGR01659 249 QEAISALNNVIPEGGSQPLTVRLAEE 274 (346)
T ss_pred HHHHHHhCCCccCCCceeEEEEECCc
Confidence 99999 58887765 6888887764
No 18
>smart00362 RRM_2 RNA recognition motif.
Probab=99.34 E-value=3.2e-12 Score=80.05 Aligned_cols=69 Identities=22% Similarity=0.380 Sum_probs=61.1
Q ss_pred HHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHHH-cCCcCCCeeEEE
Q psy3067 27 KLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQK-HKERIGHRYIFF 98 (141)
Q Consensus 27 ~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~k-~~~~i~~RyIeV 98 (141)
++.+|||++++++||++||+.++.+. .+.+..+ . |.++|.|||+|.+.++|++|++. ++..++++.|.|
T Consensus 2 v~i~~l~~~~~~~~l~~~~~~~g~v~-~~~~~~~-~-~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v 71 (72)
T smart00362 2 LFVGNLPPDVTEEDLKELFSKFGPIE-SVKIPKD-T-GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRV 71 (72)
T ss_pred EEEcCCCCcCCHHHHHHHHHhcCCEE-EEEEecC-C-CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEee
Confidence 45689999999999999999998764 5888887 4 89999999999999999999984 778899999876
No 19
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.33 E-value=1.3e-12 Score=117.71 Aligned_cols=99 Identities=25% Similarity=0.252 Sum_probs=80.7
Q ss_pred HHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEecchhh
Q psy3067 27 KLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGHRYTV 105 (141)
Q Consensus 27 ~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~ss~~~ 105 (141)
++++||||++++++|+++|+.|+.+. +|+|+.|+.+|+++|+|||+|.++++|++|++ +|+..|+||.|.|.......
T Consensus 110 LfVGnLp~~~tEe~Lr~lF~~fG~I~-sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp~~~p 188 (612)
T TIGR01645 110 VYVGSISFELREDTIRRAFDPFGPIK-SINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPSNMP 188 (612)
T ss_pred EEEcCCCCCCCHHHHHHHHHccCCEE-EEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeeccccccc
Confidence 46789999999999999999998774 69999998999999999999999999999997 69999999999997543210
Q ss_pred c---------ccC----CCCCCCCcccCCCCCCC
Q psy3067 106 Q---------HRA----PRCETSIPVSSSTHKPG 126 (141)
Q Consensus 106 ~---------~~~----~~~~~~lp~~~~~~~~~ 126 (141)
. ... .=++.|||.+.+.+.|.
T Consensus 189 ~a~~~~~~~~~~~~~~~rLfVgnLp~~vteedLk 222 (612)
T TIGR01645 189 QAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIK 222 (612)
T ss_pred ccccccccccccccccceEEeecCCCCCCHHHHH
Confidence 0 001 11266888887777665
No 20
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.33 E-value=3.4e-12 Score=115.00 Aligned_cols=99 Identities=13% Similarity=0.172 Sum_probs=82.7
Q ss_pred CCcCCCCceeEEEEEecH---------------HHHHHHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcce
Q psy3067 4 CRTGEVSDRYIEVFKVRR---------------QEMDWKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTG 68 (141)
Q Consensus 4 ~~~~~ig~RyIEv~~~~~---------------~d~~~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G 68 (141)
.|+..|+.|.|.|-.... .....++++|||++++++||+++|+.|+.+. +++|+.|+.+|+++|
T Consensus 169 lnG~~i~GR~IkV~rp~~~p~a~~~~~~~~~~~~~~~rLfVgnLp~~vteedLk~lFs~FG~I~-svrl~~D~~tgksKG 247 (612)
T TIGR01645 169 MNGQMLGGRNIKVGRPSNMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIV-KCQLARAPTGRGHKG 247 (612)
T ss_pred cCCeEEecceeeecccccccccccccccccccccccceEEeecCCCCCCHHHHHHHHhhcCCee-EEEEEecCCCCCcCC
Confidence 456777788777743221 1123578899999999999999999997773 799999977899999
Q ss_pred eeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEecch
Q psy3067 69 EAYVQFVDKETAELALQ-KHKERIGHRYIFFTGHRY 103 (141)
Q Consensus 69 ~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~ss~ 103 (141)
+|||+|.+.++|++|++ +|+..|+||+|.|..+..
T Consensus 248 fGFVeFe~~e~A~kAI~amNg~elgGr~LrV~kAi~ 283 (612)
T TIGR01645 248 YGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCVT 283 (612)
T ss_pred eEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEecCC
Confidence 99999999999999998 699999999999988753
No 21
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.32 E-value=5.8e-12 Score=79.28 Aligned_cols=71 Identities=23% Similarity=0.378 Sum_probs=62.1
Q ss_pred HHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHHH-cCCcCCCeeEEEE
Q psy3067 27 KLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQK-HKERIGHRYIFFT 99 (141)
Q Consensus 27 ~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~k-~~~~i~~RyIeV~ 99 (141)
++.+|||+.+++++|+++|+.++.+ ..+.+..+ ..++++|.|||+|.+.++|+.|++. ++..++++.|.|.
T Consensus 2 i~i~~l~~~~~~~~i~~~~~~~g~i-~~~~~~~~-~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~ 73 (74)
T cd00590 2 LFVGNLPPDVTEEDLRELFSKFGKV-ESVRIVRD-KDTKSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVE 73 (74)
T ss_pred EEEeCCCCccCHHHHHHHHHhcCCE-EEEEEeeC-CCCCcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEe
Confidence 3568999999999999999999765 36899888 5668999999999999999999985 6777999999875
No 22
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.29 E-value=5.8e-12 Score=95.42 Aligned_cols=77 Identities=19% Similarity=0.318 Sum_probs=70.5
Q ss_pred HHHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHHH-cCCcCCCeeEEEEecc
Q psy3067 25 DWKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQK-HKERIGHRYIFFTGHR 102 (141)
Q Consensus 25 ~~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~k-~~~~i~~RyIeV~~ss 102 (141)
..++++|||+++|++||.++|+.++.+ ..|++..|+.+|+++|+|||.|.++++|..|++. ++..+.+|.|.|....
T Consensus 116 ~~l~v~nL~~~~~~~~l~~~F~~~g~~-~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~ 193 (306)
T COG0724 116 NTLFVGNLPYDVTEEDLRELFKKFGPV-KRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQ 193 (306)
T ss_pred ceEEEeCCCCCCCHHHHHHHHHhcCce-eEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeeccc
Confidence 367889999999999999999999887 4799999977999999999999999999999995 7799999999999854
No 23
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.28 E-value=3.2e-12 Score=114.62 Aligned_cols=95 Identities=20% Similarity=0.179 Sum_probs=76.0
Q ss_pred HHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcC-CCeeEEEEecch
Q psy3067 26 WKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERI-GHRYIFFTGHRY 103 (141)
Q Consensus 26 ~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i-~~RyIeV~~ss~ 103 (141)
.++++|||++++|+||+++|+.++.|. +|+|+.| .+|+++|+|||+|.++|+|++||+ +|+..| .+|.|.|..+..
T Consensus 60 ~lFVgnLp~~~tEd~L~~~F~~~G~I~-~vrl~~D-~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~~S~~ 137 (578)
T TIGR01648 60 EVFVGKIPRDLYEDELVPLFEKAGPIY-ELRLMMD-FSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVCISVD 137 (578)
T ss_pred EEEeCCCCCCCCHHHHHHHHHhhCCEE-EEEEEEC-CCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCcccccccccc
Confidence 578899999999999999999998774 6999999 999999999999999999999998 577666 478777654422
Q ss_pred hhcccCCCCCCCCcccCCCCCCC
Q psy3067 104 TVQHRAPRCETSIPVSSSTHKPG 126 (141)
Q Consensus 104 ~~~~~~~~~~~~lp~~~~~~~~~ 126 (141)
...=++.+||.+.+++.+.
T Consensus 138 ----~~rLFVgNLP~~~TeeeL~ 156 (578)
T TIGR01648 138 ----NCRLFVGGIPKNKKREEIL 156 (578)
T ss_pred ----CceeEeecCCcchhhHHHH
Confidence 1123356788777665543
No 24
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.27 E-value=8.6e-12 Score=107.86 Aligned_cols=77 Identities=13% Similarity=0.206 Sum_probs=71.0
Q ss_pred HHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEecch
Q psy3067 26 WKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGHRY 103 (141)
Q Consensus 26 ~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~ss~ 103 (141)
.|+++|||+++|+++|+++|+.|+.+. .+.|+.|+.+|+++|+|||+|.+.++|++|++ +|+..|+++.|.|..+..
T Consensus 297 ~l~v~nlp~~~~~~~l~~~f~~~G~i~-~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~~ 374 (509)
T TIGR01642 297 RIYIGNLPLYLGEDQIKELLESFGDLK-AFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRACV 374 (509)
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCee-EEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECcc
Confidence 578899999999999999999998774 69999997899999999999999999999997 699999999999988764
No 25
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.26 E-value=6.9e-12 Score=110.47 Aligned_cols=77 Identities=16% Similarity=0.190 Sum_probs=70.4
Q ss_pred HHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEecchhh
Q psy3067 27 KLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGHRYTV 105 (141)
Q Consensus 27 ~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~ss~~~ 105 (141)
++++|||+++|+++|+++|+.|+.+. +|.++.| .+|+++|+|||.|.+.++|.+|+. .|+..++||.|.|..+...+
T Consensus 288 l~V~nl~~~~~~~~L~~~F~~~G~i~-~~~i~~d-~~g~~~g~gfV~f~~~~~A~~A~~~~~g~~~~gk~l~V~~a~~k~ 365 (562)
T TIGR01628 288 LYVKNLDDTVTDEKLRELFSECGEIT-SAKVMLD-EKGVSRGFGFVCFSNPEEANRAVTEMHGRMLGGKPLYVALAQRKE 365 (562)
T ss_pred EEEeCCCCccCHHHHHHHHHhcCCeE-EEEEEEC-CCCCcCCeEEEEeCCHHHHHHHHHHhcCCeeCCceeEEEeccCcH
Confidence 56689999999999999999997773 6999999 899999999999999999999998 69999999999999987543
No 26
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.24 E-value=1.5e-11 Score=105.18 Aligned_cols=76 Identities=24% Similarity=0.263 Sum_probs=69.6
Q ss_pred HHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEecc
Q psy3067 26 WKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGHR 102 (141)
Q Consensus 26 ~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~ss 102 (141)
.++++|||+++|++||+++|+.++.+. .|.|+.|+.+|+++|+|||+|.+.++|.+|++ +|+..|++|.|.|..+.
T Consensus 188 ~l~v~nl~~~~te~~l~~~f~~~G~i~-~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a~ 264 (457)
T TIGR01622 188 KLYVGNLHFNITEQELRQIFEPFGDIE-DVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYAQ 264 (457)
T ss_pred EEEEcCCCCCCCHHHHHHHHHhcCCeE-EEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEcc
Confidence 367889999999999999999998773 69999997788999999999999999999997 69999999999999864
No 27
>KOG0125|consensus
Probab=99.23 E-value=1.2e-11 Score=103.98 Aligned_cols=75 Identities=13% Similarity=0.140 Sum_probs=68.8
Q ss_pred HHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEecchh
Q psy3067 27 KLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGHRYT 104 (141)
Q Consensus 27 ~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~ss~~ 104 (141)
+.++|+||..-|.|++..|..+|.|- +|.|+++ ++| ++||+||.|++++||++|-+ .|+..+.||.|||..++..
T Consensus 99 LhVSNIPFrFRdpDL~aMF~kfG~Vl-dVEIIfN-ERG-SKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~ATar 174 (376)
T KOG0125|consen 99 LHVSNIPFRFRDPDLRAMFEKFGKVL-DVEIIFN-ERG-SKGFGFVTMENPADADRARAELHGTVVEGRKIEVNNATAR 174 (376)
T ss_pred eEeecCCccccCccHHHHHHhhCcee-eEEEEec-cCC-CCccceEEecChhhHHHHHHHhhcceeeceEEEEeccchh
Confidence 45679999999999999999998773 7999999 788 89999999999999999998 5999999999999999864
No 28
>KOG0108|consensus
Probab=99.15 E-value=5.3e-11 Score=103.72 Aligned_cols=78 Identities=23% Similarity=0.322 Sum_probs=71.7
Q ss_pred HHHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEecch
Q psy3067 25 DWKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGHRY 103 (141)
Q Consensus 25 ~~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~ss~ 103 (141)
..++.+|+||+++|++|.+.|++.+.| .++++++|+.+|+++|+||++|.+++++.+|++ .++..+++|.+.|..+..
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v-~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~ 97 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPV-LSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASN 97 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCcc-ceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeecccc
Confidence 467889999999999999999999766 369999999999999999999999999999999 599999999999987753
No 29
>smart00361 RRM_1 RNA recognition motif.
Probab=99.15 E-value=1.6e-10 Score=76.34 Aligned_cols=60 Identities=18% Similarity=0.259 Sum_probs=51.8
Q ss_pred HHHHHhhcc----cCCcccccEE-EeecCCC--CCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEE
Q psy3067 38 KDDIAQFFD----GLEIISNGIT-LVEDPFN--GRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFF 98 (141)
Q Consensus 38 e~DI~~FFs----~~~iv~~~I~-i~~d~~~--Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV 98 (141)
++||+++|+ .++.+. .|. ++.|+.+ |+++|+|||.|.+.++|++|++ +|+..+++|.|.+
T Consensus 2 ~~~l~~~~~~~~~~fG~v~-~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVG-KINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCee-EEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 689999999 887663 575 6777556 9999999999999999999998 6999999999875
No 30
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.10 E-value=2.6e-10 Score=102.38 Aligned_cols=70 Identities=16% Similarity=0.155 Sum_probs=60.8
Q ss_pred HHHHhcCCCCCCHHHHHhhcccC--CcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEecc
Q psy3067 26 WKLQHTGIVEGKKDDIAQFFDGL--EIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGHR 102 (141)
Q Consensus 26 ~~~~~gLp~s~te~DI~~FFs~~--~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~ss 102 (141)
.|+++||||++|+++|+++|+.| +-|. .|.++ +|+|||+|++.++|++||+ +|+..|++|.|+|..+.
T Consensus 235 ~LfVgNL~~~~tee~L~~~F~~f~~G~I~-rV~~~--------rgfAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~V~~Ak 305 (578)
T TIGR01648 235 ILYVRNLMTTTTEEIIEKSFSEFKPGKVE-RVKKI--------RDYAFVHFEDREDAVKAMDELNGKELEGSEIEVTLAK 305 (578)
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCCceE-EEEee--------cCeEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcc
Confidence 47889999999999999999999 6553 46554 3599999999999999997 79999999999999886
Q ss_pred hh
Q psy3067 103 YT 104 (141)
Q Consensus 103 ~~ 104 (141)
..
T Consensus 306 p~ 307 (578)
T TIGR01648 306 PV 307 (578)
T ss_pred CC
Confidence 53
No 31
>KOG4207|consensus
Probab=99.08 E-value=4.3e-11 Score=95.81 Aligned_cols=82 Identities=22% Similarity=0.277 Sum_probs=74.9
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEE
Q psy3067 21 RQEMDWKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFT 99 (141)
Q Consensus 21 ~~d~~~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~ 99 (141)
-+.|..+.+-||-|.+|.+||+.-|+.|+-| .+|.|+.|+.++.+.|||||.|....||+.||+ +|+..++||.|.|.
T Consensus 10 v~gm~SLkVdNLTyRTspd~LrrvFekYG~v-gDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq 88 (256)
T KOG4207|consen 10 VEGMTSLKVDNLTYRTSPDDLRRVFEKYGRV-GDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQ 88 (256)
T ss_pred cccceeEEecceeccCCHHHHHHHHHHhCcc-cceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeeh
Confidence 3456666778999999999999999999877 479999999999999999999999999999998 69999999999999
Q ss_pred ecch
Q psy3067 100 GHRY 103 (141)
Q Consensus 100 ~ss~ 103 (141)
.|.+
T Consensus 89 ~ary 92 (256)
T KOG4207|consen 89 MARY 92 (256)
T ss_pred hhhc
Confidence 9875
No 32
>KOG0121|consensus
Probab=99.07 E-value=3.1e-10 Score=85.04 Aligned_cols=73 Identities=22% Similarity=0.258 Sum_probs=67.1
Q ss_pred HHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEec
Q psy3067 28 LQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGH 101 (141)
Q Consensus 28 ~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~s 101 (141)
+++||+|.+||+.|.+.|+-|+.+. .|.|-.|+.+-.|.|+|||+|-+.++|..||+ .++..|+.|.|.+..-
T Consensus 40 yVgNlSfyttEEqiyELFs~cG~ir-riiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D 113 (153)
T KOG0121|consen 40 YVGNLSFYTTEEQIYELFSKCGDIR-RIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWD 113 (153)
T ss_pred EEeeeeeeecHHHHHHHHHhccchh-eeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeecc
Confidence 4579999999999999999998885 69999998888999999999999999999999 5999999999998754
No 33
>PLN03213 repressor of silencing 3; Provisional
Probab=99.07 E-value=1.8e-10 Score=101.70 Aligned_cols=73 Identities=11% Similarity=0.086 Sum_probs=66.6
Q ss_pred HHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCH--HHHHHHHH-HcCCcCCCeeEEEEecc
Q psy3067 26 WKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDK--ETAELALQ-KHKERIGHRYIFFTGHR 102 (141)
Q Consensus 26 ~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~--e~a~~AL~-k~~~~i~~RyIeV~~ss 102 (141)
.|+++||+|++|++||++.|+.||-|. +|.|+. .+| +|||||+|.++ +++++|+. +|+....||.|.|..+.
T Consensus 12 RIYVGNLSydVTEDDLravFSeFGsVk-dVEIpR--ETG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNKAK 86 (759)
T PLN03213 12 RLHVGGLGESVGRDDLLKIFSPMGTVD-AVEFVR--TKG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEKAK 86 (759)
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCee-EEEEec--ccC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEeecc
Confidence 678999999999999999999998884 799993 688 89999999988 78999998 79999999999999987
Q ss_pred h
Q psy3067 103 Y 103 (141)
Q Consensus 103 ~ 103 (141)
+
T Consensus 87 P 87 (759)
T PLN03213 87 E 87 (759)
T ss_pred H
Confidence 3
No 34
>KOG4307|consensus
Probab=99.06 E-value=1.7e-10 Score=104.69 Aligned_cols=74 Identities=24% Similarity=0.352 Sum_probs=68.7
Q ss_pred hcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHHHcCCcCCCeeEEEEecchhhccc
Q psy3067 30 HTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQKHKERIGHRYIFFTGHRYTVQHR 108 (141)
Q Consensus 30 ~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~k~~~~i~~RyIeV~~ss~~~~~~ 108 (141)
.||||++...|||+||++|.|.+.+|||+-. + .|+|||.|+|.|||..||.|++..|.+-.|.++.++..|++.
T Consensus 8 qnLP~tAga~DIR~FFSGL~IPdGgVHIIGG-e----~GeaFI~FsTDeDARlaM~kdr~~i~g~~VrLlLSSksEmq~ 81 (944)
T KOG4307|consen 8 QNLPMTAGASDIRTFFSGLKIPDGGVHIIGG-E----EGEAFIGFSTDEDARLAMTKDRLMIHGAEVRLLLSSKSEMQS 81 (944)
T ss_pred cCCcccccchHHHHhhcccccCCCceEEecc-c----ccceEEEecccchhhhhhhhcccceecceEEEEeccHHHHHH
Confidence 4999999999999999999999999999876 3 479999999999999999999999999999999999887654
No 35
>KOG4205|consensus
Probab=99.06 E-value=6.4e-11 Score=99.39 Aligned_cols=100 Identities=14% Similarity=0.207 Sum_probs=85.2
Q ss_pred HHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHHHcCCcCCCeeEEEEecchhh
Q psy3067 26 WKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQKHKERIGHRYIFFTGHRYTV 105 (141)
Q Consensus 26 ~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~k~~~~i~~RyIeV~~ss~~~ 105 (141)
+++++||+|++|++.|+++|+.++-+. ++.++.|+.+||++|++||.|++++.+.++|....+.|++|.||+.++...+
T Consensus 8 KlfiGgisw~ttee~Lr~yf~~~Gev~-d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~~~h~~dgr~ve~k~av~r~ 86 (311)
T KOG4205|consen 8 KLFIGGLSWETTEESLREYFSQFGEVT-DCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNARTHKLDGRSVEPKRAVSRE 86 (311)
T ss_pred ceeecCcCccccHHHHHHHhcccCcee-eEEEeccCCCCCcccccceecCCCcchheeecccccccCCccccceeccCcc
Confidence 688999999999999999999996663 5889999999999999999999999999999999999999999999996533
Q ss_pred -cccCC-------CCCCCCcccCCCCCCC
Q psy3067 106 -QHRAP-------RCETSIPVSSSTHKPG 126 (141)
Q Consensus 106 -~~~~~-------~~~~~lp~~~~~~~~~ 126 (141)
+.... -++-|||.+.+.+.++
T Consensus 87 ~~~~~~~~~~tkkiFvGG~~~~~~e~~~r 115 (311)
T KOG4205|consen 87 DQTKVGRHLRTKKIFVGGLPPDTTEEDFK 115 (311)
T ss_pred cccccccccceeEEEecCcCCCCchHHHh
Confidence 22211 2255899888887766
No 36
>KOG0113|consensus
Probab=99.05 E-value=3.1e-10 Score=94.53 Aligned_cols=112 Identities=20% Similarity=0.272 Sum_probs=82.9
Q ss_pred HHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHHH-cCCcCCCeeEEEEecchhh
Q psy3067 27 KLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQK-HKERIGHRYIFFTGHRYTV 105 (141)
Q Consensus 27 ~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~k-~~~~i~~RyIeV~~ss~~~ 105 (141)
+|+.-|+|+++|.+|+.-|+-|+.++ .|+||.|+.+|+++|+|||+|+++.+...|-+. ++..|++|.|-|.--....
T Consensus 104 LFv~RLnydT~EskLrreF~~YG~Ik-rirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VDvERgRT 182 (335)
T KOG0113|consen 104 LFVARLNYDTSESKLRREFEKYGPIK-RIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDVERGRT 182 (335)
T ss_pred eeeeeccccccHHHHHHHHHhcCcce-eEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEEeccccc
Confidence 46678999999999999999998885 799999999999999999999999999999995 8999999999887654322
Q ss_pred ccc-CC-CCCC---CCcccCCCC-CCCCCCCCCCCCCCCC
Q psy3067 106 QHR-AP-RCET---SIPVSSSTH-KPGRHHTLDGPNGGGT 139 (141)
Q Consensus 106 ~~~-~~-~~~~---~lp~~~~~~-~~~~~~~~~~~~~~~~ 139 (141)
+.. -+ ++.- |--+.+.+. .+.+..|+-+|.++|.
T Consensus 183 vkgW~PRRLGGGLGg~r~~~~~~~~~~R~R~~~s~~~gg~ 222 (335)
T KOG0113|consen 183 VKGWLPRRLGGGLGGRRYESRQLRFGGRERPFRSPLNGGE 222 (335)
T ss_pred ccccccccccCCcCCccccccccccccccccccCCCCCCc
Confidence 211 11 1111 112222222 2336777778877764
No 37
>KOG0127|consensus
Probab=99.04 E-value=2.1e-10 Score=101.80 Aligned_cols=77 Identities=23% Similarity=0.259 Sum_probs=69.0
Q ss_pred HHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEecchh
Q psy3067 26 WKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGHRYT 104 (141)
Q Consensus 26 ~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~ss~~ 104 (141)
.+|+|||||+|.+.||...|+.+|-| -.|.|+.. ..|+-.|||||+|....+|.+||+ .|...|+||+|-|.-+-..
T Consensus 119 rLIIRNLPf~~k~~dLk~vFs~~G~V-~Ei~IP~k-~dgklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~K 196 (678)
T KOG0127|consen 119 RLIIRNLPFKCKKPDLKNVFSNFGKV-VEIVIPRK-KDGKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVDK 196 (678)
T ss_pred eEEeecCCcccCcHHHHHHHhhcceE-EEEEcccC-CCCCccceEEEEEeeHHHHHHHHHhccCceecCceeEEeeeccc
Confidence 46889999999999999999999766 35999977 789999999999999999999999 5999999999999877543
No 38
>KOG0126|consensus
Probab=99.01 E-value=2.1e-11 Score=95.88 Aligned_cols=76 Identities=22% Similarity=0.210 Sum_probs=69.9
Q ss_pred HHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEecc
Q psy3067 26 WKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGHR 102 (141)
Q Consensus 26 ~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~ss 102 (141)
||+++||||..||.||.--||.+|.+ .+|.++.|+.||+++||||..++++..-..|+. .|+-.|.+|.|.|.-+.
T Consensus 37 ~Iyiggl~~~LtEgDil~VFSqyGe~-vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv~ 113 (219)
T KOG0126|consen 37 YIYIGGLPYELTEGDILCVFSQYGEI-VDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHVS 113 (219)
T ss_pred EEEECCCcccccCCcEEEEeeccCce-EEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeecc
Confidence 67889999999999999999999644 359999999999999999999999999999998 79999999999998775
No 39
>KOG4205|consensus
Probab=98.99 E-value=1.8e-10 Score=96.72 Aligned_cols=102 Identities=13% Similarity=0.190 Sum_probs=90.5
Q ss_pred CCcCCCCceeEEEEEecHHHH----------HHHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEE
Q psy3067 4 CRTGEVSDRYIEVFKVRRQEM----------DWKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQ 73 (141)
Q Consensus 4 ~~~~~ig~RyIEv~~~~~~d~----------~~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~ 73 (141)
...|.|..|-||+.++..++. .+++++|||.+++++|++++|..++.+. .+.+++|+.+.+++|++||.
T Consensus 67 ~~~h~~dgr~ve~k~av~r~~~~~~~~~~~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~-~~~~~~d~~~~~~rgFgfv~ 145 (311)
T KOG4205|consen 67 ARTHKLDGRSVEPKRAVSREDQTKVGRHLRTKKIFVGGLPPDTTEEDFKDYFEQFGKVA-DVVIMYDKTTSRPRGFGFVT 145 (311)
T ss_pred ccccccCCccccceeccCcccccccccccceeEEEecCcCCCCchHHHhhhhhccceeE-eeEEeecccccccccceeeE
Confidence 346789999999999966552 2567899999999999999999999774 68999998999999999999
Q ss_pred eCCHHHHHHHHHHcCCcCCCeeEEEEecchhhc
Q psy3067 74 FVDKETAELALQKHKERIGHRYIFFTGHRYTVQ 106 (141)
Q Consensus 74 F~s~e~a~~AL~k~~~~i~~RyIeV~~ss~~~~ 106 (141)
|.+++++.+++.++-+.+.++.+||..+-+.+.
T Consensus 146 ~~~e~sVdkv~~~~f~~~~gk~vevkrA~pk~~ 178 (311)
T KOG4205|consen 146 FDSEDSVDKVTLQKFHDFNGKKVEVKRAIPKEV 178 (311)
T ss_pred eccccccceecccceeeecCceeeEeeccchhh
Confidence 999999999999999999999999999977553
No 40
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=98.97 E-value=1e-09 Score=95.90 Aligned_cols=71 Identities=15% Similarity=0.111 Sum_probs=61.5
Q ss_pred HHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHHH---cCCcCCCeeEEEEecch
Q psy3067 27 KLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQK---HKERIGHRYIFFTGHRY 103 (141)
Q Consensus 27 ~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~k---~~~~i~~RyIeV~~ss~ 103 (141)
|+++||||++|++||+++|+.+|.|. .|.++.+ +|+|||+|.+.++|++|++. +...|+||.|.|..+..
T Consensus 5 v~V~nLp~~~te~~L~~~f~~fG~V~-~v~i~~~------k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~s~~ 77 (481)
T TIGR01649 5 VHVRNLPQDVVEADLVEALIPFGPVS-YVMMLPG------KRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNYSTS 77 (481)
T ss_pred EEEcCCCCCCCHHHHHHHHHhcCCee-EEEEECC------CCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEecCC
Confidence 46789999999999999999998874 6877754 37999999999999999983 67899999999998764
Q ss_pred h
Q psy3067 104 T 104 (141)
Q Consensus 104 ~ 104 (141)
.
T Consensus 78 ~ 78 (481)
T TIGR01649 78 Q 78 (481)
T ss_pred c
Confidence 3
No 41
>KOG4307|consensus
Probab=98.96 E-value=1.5e-09 Score=98.63 Aligned_cols=70 Identities=27% Similarity=0.351 Sum_probs=66.1
Q ss_pred hcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEe
Q psy3067 30 HTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTG 100 (141)
Q Consensus 30 ~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~ 100 (141)
+|.||+++-+||.+||++|.+..++|++-++ ..|.+||+|-|.|+|+++|..|.. ++++.|.+|.|.|..
T Consensus 873 ~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~n-d~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l~i 943 (944)
T KOG4307|consen 873 NNFPFDVTLEDIVEFFNDYEPDPNSIRIRRN-DDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSLRI 943 (944)
T ss_pred cCCCccccHHHHHHHhcccccCCCceeEeec-CCCCcccceeEeecCHHHHHhhhhccccCcccceeEEEEe
Confidence 5899999999999999999999999999999 999999999999999999999987 899999999998753
No 42
>KOG0122|consensus
Probab=98.93 E-value=1.5e-09 Score=88.49 Aligned_cols=81 Identities=17% Similarity=0.198 Sum_probs=69.0
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEE
Q psy3067 21 RQEMDWKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFT 99 (141)
Q Consensus 21 ~~d~~~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~ 99 (141)
..|...+-+.|||-+++|+||.+.|..++.+. .|.|..|+.+|.++|||||.|.+.++|++|+. +|+.-+++=-+.|.
T Consensus 186 R~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~-rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvE 264 (270)
T KOG0122|consen 186 RDDEATVRVTNLSEDMREDDLEELFRPFGPIT-RVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVE 264 (270)
T ss_pred CCccceeEEecCccccChhHHHHHhhccCccc-eeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEE
Confidence 34665677789999999999999999998774 79999999999999999999999999999998 58877776666655
Q ss_pred ecc
Q psy3067 100 GHR 102 (141)
Q Consensus 100 ~ss 102 (141)
-+.
T Consensus 265 wsk 267 (270)
T KOG0122|consen 265 WSK 267 (270)
T ss_pred ecC
Confidence 444
No 43
>KOG0127|consensus
Probab=98.89 E-value=1.8e-09 Score=96.01 Aligned_cols=76 Identities=14% Similarity=0.195 Sum_probs=69.1
Q ss_pred HHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHHHc------C-CcCCCeeEEE
Q psy3067 26 WKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQKH------K-ERIGHRYIFF 98 (141)
Q Consensus 26 ~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~k~------~-~~i~~RyIeV 98 (141)
-+|+|||||++||++|.+-|+.||.++ .+.|+.|+.+|++.|.|||.|.++.+++.+|+.- + -.|+||.+.|
T Consensus 294 tVFvRNL~fD~tEEel~~~fskFG~v~-ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~Aspa~e~g~~ll~GR~Lkv 372 (678)
T KOG0127|consen 294 TVFVRNLPFDTTEEELKEHFSKFGEVK-YAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAASPASEDGSVLLDGRLLKV 372 (678)
T ss_pred eEEEecCCccccHHHHHHHHHhhccce-eEEEEeccCCCCcccceEEEeccHHHHHHHHHhcCccCCCceEEEeccEEee
Confidence 578899999999999999999999885 7999999999999999999999999999999853 3 4689999999
Q ss_pred Eecc
Q psy3067 99 TGHR 102 (141)
Q Consensus 99 ~~ss 102 (141)
.++-
T Consensus 373 ~~Av 376 (678)
T KOG0127|consen 373 TLAV 376 (678)
T ss_pred eecc
Confidence 9884
No 44
>KOG0145|consensus
Probab=98.89 E-value=1.2e-09 Score=90.33 Aligned_cols=100 Identities=18% Similarity=0.238 Sum_probs=86.6
Q ss_pred HHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEecchh
Q psy3067 26 WKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGHRYT 104 (141)
Q Consensus 26 ~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~ss~~ 104 (141)
++++.=||.+-|+++++..|+.++-+ +++.++.|+.+|++.|++||-+..++||++|+. .|+-.+..+.|.|.-+++.
T Consensus 43 NLIvNYLPQ~MTqdE~rSLF~SiGei-EScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSyARPS 121 (360)
T KOG0145|consen 43 NLIVNYLPQNMTQDELRSLFGSIGEI-ESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSYARPS 121 (360)
T ss_pred eeeeeecccccCHHHHHHHhhcccce-eeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEeccCC
Confidence 45555689999999999999999877 489999999999999999999999999999998 6999999999999988762
Q ss_pred -hc-ccCCCCCCCCcccCCCCCCC
Q psy3067 105 -VQ-HRAPRCETSIPVSSSTHKPG 126 (141)
Q Consensus 105 -~~-~~~~~~~~~lp~~~~~~~~~ 126 (141)
+. +-+.-++.|||-+.++.+++
T Consensus 122 s~~Ik~aNLYvSGlPktMtqkelE 145 (360)
T KOG0145|consen 122 SDSIKDANLYVSGLPKTMTQKELE 145 (360)
T ss_pred hhhhcccceEEecCCccchHHHHH
Confidence 33 33455589999998888776
No 45
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=98.89 E-value=9.9e-10 Score=95.06 Aligned_cols=76 Identities=13% Similarity=0.079 Sum_probs=57.2
Q ss_pred HHHHhcCCCCCCHHHHHhhcccC----Cccc-ccEEEeecCCCCCcceeeEEEeCCHHHHHHHHHHcCCcCCCeeEEEEe
Q psy3067 26 WKLQHTGIVEGKKDDIAQFFDGL----EIIS-NGITLVEDPFNGRPTGEAYVQFVDKETAELALQKHKERIGHRYIFFTG 100 (141)
Q Consensus 26 ~~~~~gLp~s~te~DI~~FFs~~----~iv~-~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~k~~~~i~~RyIeV~~ 100 (141)
.|+++|||+++|+++|.+||+.+ +... ..+..+.+...++.+|+|||+|.+.++|++||++++..+.|+.|.|..
T Consensus 177 ~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~~~~kg~afVeF~~~e~A~~Al~l~g~~~~g~~l~v~r 256 (509)
T TIGR01642 177 RLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNINKEKNFAFLEFRTVEEATFAMALDSIIYSNVFLKIRR 256 (509)
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEECCCCCEEEEEeCCHHHHhhhhcCCCeEeeCceeEecC
Confidence 46789999999999999999974 1000 001111111235667999999999999999999999999999999864
Q ss_pred c
Q psy3067 101 H 101 (141)
Q Consensus 101 s 101 (141)
.
T Consensus 257 ~ 257 (509)
T TIGR01642 257 P 257 (509)
T ss_pred c
Confidence 3
No 46
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=98.86 E-value=4.4e-09 Score=91.96 Aligned_cols=72 Identities=11% Similarity=0.066 Sum_probs=63.7
Q ss_pred HHHHhcCCC-CCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEecch
Q psy3067 26 WKLQHTGIV-EGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGHRY 103 (141)
Q Consensus 26 ~~~~~gLp~-s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~ss~ 103 (141)
.++++|||+ .+|+++|++.|+.||-|. .|.|+.+ . +|+|||+|.+.++|++||+ +|+..|.||.|.|..+..
T Consensus 277 ~l~v~nL~~~~vt~~~L~~lF~~yG~V~-~vki~~~-~----~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~s~~ 350 (481)
T TIGR01649 277 VLMVSGLHQEKVNCDRLFNLFCVYGNVE-RVKFMKN-K----KETALIEMADPYQAQLALTHLNGVKLFGKPLRVCPSKQ 350 (481)
T ss_pred EEEEeCCCCCCCCHHHHHHHHHhcCCeE-EEEEEeC-C----CCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEccc
Confidence 467789998 699999999999997773 6999887 2 5899999999999999998 799999999999988754
No 47
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=98.80 E-value=2.1e-08 Score=62.93 Aligned_cols=55 Identities=18% Similarity=0.291 Sum_probs=46.0
Q ss_pred HHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEec
Q psy3067 41 IAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGH 101 (141)
Q Consensus 41 I~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~s 101 (141)
|.+.|+.+|.+. .|.+..+ . +|.|||+|.+.++|++|++ .|+..++||.|.|.-|
T Consensus 1 L~~~f~~fG~V~-~i~~~~~-~----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVK-KIKIFKK-K----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EE-EEEEETT-S----TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEE-EEEEEeC-C----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 578999998773 5777655 2 6899999999999999998 6999999999998754
No 48
>KOG0117|consensus
Probab=98.78 E-value=9.7e-09 Score=89.44 Aligned_cols=74 Identities=23% Similarity=0.320 Sum_probs=64.3
Q ss_pred HHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcC-CCeeEEEEec
Q psy3067 27 KLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERI-GHRYIFFTGH 101 (141)
Q Consensus 27 ~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i-~~RyIeV~~s 101 (141)
||+++||-++.|+||+.+|+..+-+= .++|++|+.+|..+|+|||.|.+.++|++|++ .|...| -||.|.|..|
T Consensus 86 VfvGkIPrD~~EdeLvplfEkiG~I~-elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc~S 161 (506)
T KOG0117|consen 86 VFVGKIPRDVFEDELVPLFEKIGKIY-ELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVCVS 161 (506)
T ss_pred EEecCCCccccchhhHHHHHhcccee-eEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEEEe
Confidence 46678999999999999999996552 59999999999999999999999999999998 576655 5788877654
No 49
>KOG0124|consensus
Probab=98.78 E-value=4.3e-09 Score=90.33 Aligned_cols=74 Identities=28% Similarity=0.360 Sum_probs=68.7
Q ss_pred HHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEecc
Q psy3067 28 LQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGHR 102 (141)
Q Consensus 28 ~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~ss 102 (141)
+++.+.|...|+-||.-|.++++++ +|.+.-|+.+|+.+|||||+++-+|.|+.||+ +|++.||||.|.|-..+
T Consensus 117 YVGSIsfEl~EDtiR~AF~PFGPIK-SInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrPs 191 (544)
T KOG0124|consen 117 YVGSISFELREDTIRRAFDPFGPIK-SINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPS 191 (544)
T ss_pred eeeeeEEEechHHHHhhccCCCCcc-eeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCCC
Confidence 4467999999999999999999995 89999999999999999999999999999998 69999999999998654
No 50
>KOG0130|consensus
Probab=98.72 E-value=9.4e-09 Score=77.89 Aligned_cols=74 Identities=19% Similarity=0.137 Sum_probs=68.1
Q ss_pred HHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEecc
Q psy3067 28 LQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGHR 102 (141)
Q Consensus 28 ~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~ss 102 (141)
|+.|+.-.+||+||.+-|.+|+.++ .||+-.|+.+|-.+|+|.|++++.++|++|+. +|+..|-+..|+|.-|=
T Consensus 76 ~VtgvHeEatEedi~d~F~dyGeiK-NihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw~F 150 (170)
T KOG0130|consen 76 FVTGVHEEATEEDIHDKFADYGEIK-NIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDWCF 150 (170)
T ss_pred EEeccCcchhHHHHHHHHhhccccc-ceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEEEE
Confidence 5578899999999999999998885 69999999999999999999999999999998 69999999999998773
No 51
>KOG0144|consensus
Probab=98.69 E-value=3e-08 Score=86.21 Aligned_cols=81 Identities=15% Similarity=0.218 Sum_probs=70.0
Q ss_pred HHHHHHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCC-cC--CCeeEE
Q psy3067 22 QEMDWKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKE-RI--GHRYIF 97 (141)
Q Consensus 22 ~d~~~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~-~i--~~RyIe 97 (141)
.|..++|++-+|-++||.||++.|+.++.| ..|.|++|+.+|.++|.|||.|.+.++|.+|+. .|.. .+ .+-+|.
T Consensus 32 ~~~vKlfVgqIprt~sE~dlr~lFe~yg~V-~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvq 110 (510)
T KOG0144|consen 32 GSAVKLFVGQIPRTASEKDLRELFEKYGNV-YEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQ 110 (510)
T ss_pred chhhhheeccCCccccHHHHHHHHHHhCce-eEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCccee
Confidence 445688999999999999999999999888 479999999999999999999999999999997 5544 44 356888
Q ss_pred EEecch
Q psy3067 98 FTGHRY 103 (141)
Q Consensus 98 V~~ss~ 103 (141)
|..+..
T Consensus 111 vk~Ad~ 116 (510)
T KOG0144|consen 111 VKYADG 116 (510)
T ss_pred ecccch
Confidence 888865
No 52
>KOG0114|consensus
Probab=98.69 E-value=4.6e-08 Score=71.16 Aligned_cols=73 Identities=15% Similarity=0.151 Sum_probs=63.1
Q ss_pred HHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEecch
Q psy3067 27 KLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGHRY 103 (141)
Q Consensus 27 ~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~ss~ 103 (141)
++++||||++|.+++.+.|..++.+- .|+|--+ -..+|.|||.+++..+|++|+. +++..+.+||+-|.-...
T Consensus 21 LyirNLp~~ITseemydlFGkyg~Ir-QIRiG~~---k~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyyq~ 94 (124)
T KOG0114|consen 21 LYIRNLPFKITSEEMYDLFGKYGTIR-QIRIGNT---KETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYYQP 94 (124)
T ss_pred EEEecCCccccHHHHHHHhhcccceE-EEEecCc---cCcCceEEEEehHhhhHHHHHHHhcccccCCceEEEEecCH
Confidence 46799999999999999999997763 5887655 3457999999999999999999 599999999999887654
No 53
>KOG0147|consensus
Probab=98.64 E-value=6e-08 Score=85.97 Aligned_cols=76 Identities=22% Similarity=0.260 Sum_probs=68.5
Q ss_pred HHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEecch
Q psy3067 27 KLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGHRY 103 (141)
Q Consensus 27 ~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~ss~ 103 (141)
+++++|+|+.||++++.-|++++-+. -|.+.+|..+|+.+||+|++|.+.++|++|+. .|+-.|-||.|.|...+.
T Consensus 281 l~vgnLHfNite~~lr~ifepfg~Ie-~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v~~ 357 (549)
T KOG0147|consen 281 LYVGNLHFNITEDMLRGIFEPFGKIE-NVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSVVTE 357 (549)
T ss_pred hhhcccccCchHHHHhhhccCcccce-eeeeccccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEEeee
Confidence 56789999999999999999998774 69999995599999999999999999999986 699999999999877654
No 54
>KOG0117|consensus
Probab=98.62 E-value=5e-08 Score=85.06 Aligned_cols=71 Identities=14% Similarity=0.205 Sum_probs=64.0
Q ss_pred HHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEecchhh
Q psy3067 27 KLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGHRYTV 105 (141)
Q Consensus 27 ~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~ss~~~ 105 (141)
+++|||+-++||+-|.+.|+.++-|. .|..+.| +|||.|.+.++|-+||+ .|+..|+|-.|||..+.+..
T Consensus 262 LYVRNL~~~tTeE~lk~~F~~~G~ve-RVkk~rD--------YaFVHf~eR~davkAm~~~ngkeldG~~iEvtLAKP~~ 332 (506)
T KOG0117|consen 262 LYVRNLMESTTEETLKKLFNEFGKVE-RVKKPRD--------YAFVHFAEREDAVKAMKETNGKELDGSPIEVTLAKPVD 332 (506)
T ss_pred eeeeccchhhhHHHHHHHHHhccceE-Eeecccc--------eeEEeecchHHHHHHHHHhcCceecCceEEEEecCChh
Confidence 46799999999999999999998774 6777777 99999999999999998 69999999999999998754
Q ss_pred c
Q psy3067 106 Q 106 (141)
Q Consensus 106 ~ 106 (141)
+
T Consensus 333 k 333 (506)
T KOG0117|consen 333 K 333 (506)
T ss_pred h
Confidence 3
No 55
>KOG0148|consensus
Probab=98.62 E-value=5e-08 Score=80.80 Aligned_cols=75 Identities=23% Similarity=0.275 Sum_probs=66.3
Q ss_pred HHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEecch
Q psy3067 28 LQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGHRY 103 (141)
Q Consensus 28 ~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~ss~ 103 (141)
+.+-|.-.++-++|++-|.+++-|. +.++++|..++|++|++||.|-+.++|+.|++ ++++-||.|.|.-.=+++
T Consensus 66 fvgdls~eI~~e~lr~aF~pFGevS-~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWATR 141 (321)
T KOG0148|consen 66 FVGDLSPEIDNEKLREAFAPFGEVS-DAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWATR 141 (321)
T ss_pred EehhcchhcchHHHHHHhccccccc-cceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeecccccc
Confidence 4445677789999999999997774 69999999999999999999999999999998 799999999998766654
No 56
>KOG0107|consensus
Probab=98.60 E-value=5e-08 Score=76.33 Aligned_cols=72 Identities=18% Similarity=0.142 Sum_probs=63.9
Q ss_pred HHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEecch
Q psy3067 26 WKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGHRY 103 (141)
Q Consensus 26 ~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~ss~ 103 (141)
+|+++||+..+++.||-.-|+-++.+. +|-|... |-|||||+|+++.||..|+. +|+..|-+..|.|..++-
T Consensus 12 kVYVGnL~~~a~k~eLE~~F~~yG~lr-svWvArn-----PPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~G 84 (195)
T KOG0107|consen 12 KVYVGNLGSRATKRELERAFSKYGPLR-SVWVARN-----PPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELSTG 84 (195)
T ss_pred eEEeccCCCCcchHHHHHHHHhcCcce-eEEEeec-----CCCceEEeccCcccHHHHHhhcCCccccCceEEEEeecC
Confidence 567899999999999999999999884 5666554 77999999999999999998 799999999999998875
No 57
>KOG0123|consensus
Probab=98.57 E-value=1.4e-07 Score=80.92 Aligned_cols=90 Identities=17% Similarity=0.219 Sum_probs=75.6
Q ss_pred CCCceeEEEEEecHHHHHHHHHhcCCCCCCHHHHHhhcccC-CcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-
Q psy3067 8 EVSDRYIEVFKVRRQEMDWKLQHTGIVEGKKDDIAQFFDGL-EIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ- 85 (141)
Q Consensus 8 ~ig~RyIEv~~~~~~d~~~~~~~gLp~s~te~DI~~FFs~~-~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~- 85 (141)
.+..+-|.|..+.+..- .++..||+-+++.++|.++|+.+ +|+ ++.+..| .+| ++|+ ||+|+++++|++|++
T Consensus 61 ~~~~~~~rim~s~rd~~-~~~i~nl~~~~~~~~~~d~f~~~g~il--S~kv~~~-~~g-~kg~-FV~f~~e~~a~~ai~~ 134 (369)
T KOG0123|consen 61 VLKGKPIRIMWSQRDPS-LVFIKNLDESIDNKSLYDTFSEFGNIL--SCKVATD-ENG-SKGY-FVQFESEESAKKAIEK 134 (369)
T ss_pred ccCCcEEEeehhccCCc-eeeecCCCcccCcHHHHHHHHhhcCee--EEEEEEc-CCC-ceee-EEEeCCHHHHHHHHHH
Confidence 45556667766655443 38889999999999999999999 566 4999999 899 9999 999999999999999
Q ss_pred HcCCcCCCeeEEEEecch
Q psy3067 86 KHKERIGHRYIFFTGHRY 103 (141)
Q Consensus 86 k~~~~i~~RyIeV~~ss~ 103 (141)
+|+..+.+..|.|-+.-.
T Consensus 135 ~ng~ll~~kki~vg~~~~ 152 (369)
T KOG0123|consen 135 LNGMLLNGKKIYVGLFER 152 (369)
T ss_pred hcCcccCCCeeEEeeccc
Confidence 599999999998877654
No 58
>KOG0131|consensus
Probab=98.56 E-value=2.1e-08 Score=78.86 Aligned_cols=81 Identities=12% Similarity=0.106 Sum_probs=73.1
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEE
Q psy3067 21 RQEMDWKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFT 99 (141)
Q Consensus 21 ~~d~~~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~ 99 (141)
++|+ .++.+||+-.+|++-|.+.|-.++.| -+|+|+.|+.+.+..|+|||+|.++|+|+-|++ ++.-.|=||+|.|.
T Consensus 7 nqd~-tiyvgnld~kvs~~~l~EL~iqagpV-v~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~ 84 (203)
T KOG0131|consen 7 NQDA-TLYVGNLDEKVSEELLYELFIQAGPV-VNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVN 84 (203)
T ss_pred CCCc-eEEEecCCHHHHHHHHHHHHHhcCce-eeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEE
Confidence 3455 67889999999999999999999766 369999999999999999999999999999999 68889999999999
Q ss_pred ecch
Q psy3067 100 GHRY 103 (141)
Q Consensus 100 ~ss~ 103 (141)
.++.
T Consensus 85 kas~ 88 (203)
T KOG0131|consen 85 KASA 88 (203)
T ss_pred eccc
Confidence 9983
No 59
>KOG4212|consensus
Probab=98.56 E-value=6.8e-08 Score=84.45 Aligned_cols=75 Identities=19% Similarity=0.200 Sum_probs=67.4
Q ss_pred HHHhcCCCCCCHHHHHhhcccC-CcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEecch
Q psy3067 27 KLQHTGIVEGKKDDIAQFFDGL-EIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGHRY 103 (141)
Q Consensus 27 ~~~~gLp~s~te~DI~~FFs~~-~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~ss~ 103 (141)
+|+.|+||+...+|+++.|... +-| .-|.+++| .+||++|.|-|+|+++|.+++|++ +++..+.+|.|-|....-
T Consensus 47 vfItNIpyd~rWqdLKdLvrekvGev-~yveLl~D-~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKEd~d 123 (608)
T KOG4212|consen 47 VFITNIPYDYRWQDLKDLVREKVGEV-EYVELLFD-ESGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKEDHD 123 (608)
T ss_pred EEEecCcchhhhHhHHHHHHHhcCce-Eeeeeecc-cCCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEeccCc
Confidence 6778999999999999999987 555 36999999 999999999999999999999999 599999999999887643
No 60
>KOG0123|consensus
Probab=98.54 E-value=2.1e-07 Score=79.81 Aligned_cols=66 Identities=20% Similarity=0.158 Sum_probs=60.7
Q ss_pred CCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEecch
Q psy3067 34 VEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGHRY 103 (141)
Q Consensus 34 ~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~ss~ 103 (141)
.++||.+|.++|++.+.+ .+|+++.| . + +.|+|||.|.++++|++||+ +|...+.|+.|.|..+.+
T Consensus 8 ~~v~e~~l~~~f~~~~~v-~s~rvc~d-~-t-slgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~r 74 (369)
T KOG0123|consen 8 PDVTEAMLFDKFSPAGPV-LSIRVCRD-A-T-SLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQR 74 (369)
T ss_pred CcCChHHHHHHhcccCCc-eeEEEeec-C-C-ccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhcc
Confidence 789999999999999777 37999999 6 6 99999999999999999998 699999999999997755
No 61
>KOG0144|consensus
Probab=98.52 E-value=8.9e-08 Score=83.35 Aligned_cols=75 Identities=16% Similarity=0.185 Sum_probs=66.1
Q ss_pred HHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcC-CcCCCe--eEEEEec
Q psy3067 26 WKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHK-ERIGHR--YIFFTGH 101 (141)
Q Consensus 26 ~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~-~~i~~R--yIeV~~s 101 (141)
++|++-|+..+||.||++.|+.|+.++ ++.|+.| ..|.++|.|||.|.+.|.|..|++ +|+ +.|.|- ++-|..+
T Consensus 126 KLFvg~lsK~~te~evr~iFs~fG~Ie-d~~ilrd-~~~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLVVkFA 203 (510)
T KOG0144|consen 126 KLFVGMLSKQCTENEVREIFSRFGHIE-DCYILRD-PDGLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLVVKFA 203 (510)
T ss_pred hhhhhhccccccHHHHHHHHHhhCccc-hhhheec-ccccccceeEEEEehHHHHHHHHHhhccceeeccCCCceEEEec
Confidence 678899999999999999999999995 7999999 899999999999999999999998 565 577765 6666666
Q ss_pred c
Q psy3067 102 R 102 (141)
Q Consensus 102 s 102 (141)
.
T Consensus 204 D 204 (510)
T KOG0144|consen 204 D 204 (510)
T ss_pred c
Confidence 4
No 62
>KOG0533|consensus
Probab=98.41 E-value=1.5e-06 Score=70.96 Aligned_cols=78 Identities=18% Similarity=0.131 Sum_probs=68.5
Q ss_pred HHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHHH-cCCcCCCeeEEEEecchh
Q psy3067 26 WKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQK-HKERIGHRYIFFTGHRYT 104 (141)
Q Consensus 26 ~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~k-~~~~i~~RyIeV~~ss~~ 104 (141)
.+.+.|||+.++++||+++|..++.+ ..+.+-+| ..|++.|.|-|.|...+||.+|+++ ++-.++++.|.+......
T Consensus 85 ~v~v~NL~~~V~~~Dl~eLF~~~~~~-~r~~vhy~-~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i~~~ 162 (243)
T KOG0533|consen 85 KVNVSNLPYGVIDADLKELFAEFGEL-KRVAVHYD-RAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEIISSP 162 (243)
T ss_pred eeeeecCCcCcchHHHHHHHHHhccc-eEEeeccC-CCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEecCc
Confidence 46778999999999999999999544 35888899 8999999999999999999999994 889999999999887653
Q ss_pred h
Q psy3067 105 V 105 (141)
Q Consensus 105 ~ 105 (141)
.
T Consensus 163 ~ 163 (243)
T KOG0533|consen 163 S 163 (243)
T ss_pred c
Confidence 3
No 63
>KOG4209|consensus
Probab=98.38 E-value=3.1e-07 Score=74.31 Aligned_cols=77 Identities=27% Similarity=0.233 Sum_probs=69.6
Q ss_pred HHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHHHcCCcCCCeeEEEEecchh
Q psy3067 27 KLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQKHKERIGHRYIFFTGHRYT 104 (141)
Q Consensus 27 ~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~k~~~~i~~RyIeV~~ss~~ 104 (141)
++.+++-|.+|.++|..-|+.|+-+ +.|.|+.|+..|.++|+|||+|.+.+.++.|++.|+..|.+|-|+|..-..+
T Consensus 104 v~v~nvd~~~t~~~~e~hf~~Cg~i-~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~l~gs~i~~~~i~vt~~r~~ 180 (231)
T KOG4209|consen 104 VWVGNVDFLVTLTKIELHFESCGGI-NRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYKLDGSEIPGPAIEVTLKRTN 180 (231)
T ss_pred EEEeccccccccchhhheeeccCCc-cceeeeccccCCCcceeEEEecccHhhhHHHhhcCCcccccccceeeeeeee
Confidence 3457899999999999999999877 4799999988889999999999999999999999999999999999877653
No 64
>KOG4208|consensus
Probab=98.37 E-value=6.9e-07 Score=71.27 Aligned_cols=73 Identities=15% Similarity=0.166 Sum_probs=61.9
Q ss_pred hcCCCCCCHHHHHhhcccC-CcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEecch
Q psy3067 30 HTGIVEGKKDDIAQFFDGL-EIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGHRY 103 (141)
Q Consensus 30 ~gLp~s~te~DI~~FFs~~-~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~ss~ 103 (141)
.-+|+-.-+..|..||..+ +.+. .+++..++.||.++|+|||+|+|++.|+-|-+ +|.-+|.++-+++-.--+
T Consensus 55 ~~~p~g~~e~~~~~~~~q~~g~v~-r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~vmpp 129 (214)
T KOG4208|consen 55 DHIPHGFFETEILNYFRQFGGTVT-RFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECHVMPP 129 (214)
T ss_pred cccccchhHHHHhhhhhhcCCeeE-EEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeEEeCc
Confidence 4578889999999999998 7764 57777899999999999999999999998887 798888888777655443
No 65
>KOG0110|consensus
Probab=98.30 E-value=1.7e-06 Score=78.81 Aligned_cols=74 Identities=14% Similarity=0.195 Sum_probs=63.7
Q ss_pred HHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCC----CcceeeEEEeCCHHHHHHHHHH-cCCcCCCeeEEEEec
Q psy3067 27 KLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNG----RPTGEAYVQFVDKETAELALQK-HKERIGHRYIFFTGH 101 (141)
Q Consensus 27 ~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~G----r~~G~afV~F~s~e~a~~AL~k-~~~~i~~RyIeV~~s 101 (141)
++..||+|++|.+++..-|+-.|.|. +|.|..- .++ .+.|+|||+|.++++|+.|++. ++..|+|+.|+|..|
T Consensus 518 lfvkNlnf~Tt~e~l~~~F~k~G~Vl-S~~I~kk-kd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S 595 (725)
T KOG0110|consen 518 LFVKNLNFDTTLEDLEDLFSKQGTVL-SIEISKK-KDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKIS 595 (725)
T ss_pred hhhhcCCcccchhHHHHHHHhcCeEE-EEEEecc-ccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEec
Confidence 78899999999999999999997663 5766554 333 3669999999999999999995 779999999999888
Q ss_pred c
Q psy3067 102 R 102 (141)
Q Consensus 102 s 102 (141)
-
T Consensus 596 ~ 596 (725)
T KOG0110|consen 596 E 596 (725)
T ss_pred c
Confidence 6
No 66
>KOG0148|consensus
Probab=98.28 E-value=5.4e-07 Score=74.74 Aligned_cols=66 Identities=23% Similarity=0.266 Sum_probs=57.3
Q ss_pred HHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEE
Q psy3067 27 KLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFT 99 (141)
Q Consensus 27 ~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~ 99 (141)
|+.+|++--.||++|++-|+.++.+. .|++..|+ |+|||.|.+.|+|..|+- .|+..|++..|..+
T Consensus 167 VY~G~I~~~lte~~mr~~Fs~fG~I~-EVRvFk~q------GYaFVrF~tkEaAahAIv~mNntei~G~~VkCs 233 (321)
T KOG0148|consen 167 VYVGNIASGLTEDLMRQTFSPFGPIQ-EVRVFKDQ------GYAFVRFETKEAAAHAIVQMNNTEIGGQLVRCS 233 (321)
T ss_pred EEeCCcCccccHHHHHHhcccCCcce-EEEEeccc------ceEEEEecchhhHHHHHHHhcCceeCceEEEEe
Confidence 35578888899999999999998774 69999883 899999999999999997 79999999887644
No 67
>KOG0145|consensus
Probab=98.27 E-value=1.6e-06 Score=71.91 Aligned_cols=76 Identities=13% Similarity=0.214 Sum_probs=67.6
Q ss_pred HHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEecc
Q psy3067 26 WKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGHR 102 (141)
Q Consensus 26 ~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~ss 102 (141)
|+|+-||.-++.|.-+.+.|.+++.|. .|.++.|..+.+-+|++||.+.+-++|..|+. .|+-.|++|.+.|..-+
T Consensus 280 ciFvYNLspd~de~~LWQlFgpFGAv~-nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~rvLQVsFKt 356 (360)
T KOG0145|consen 280 CIFVYNLSPDADESILWQLFGPFGAVT-NVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKT 356 (360)
T ss_pred EEEEEecCCCchHhHHHHHhCccccee-eEEEEecCCcccccceeEEEecchHHHHHHHHHhcCccccceEEEEEEec
Confidence 556668899999999999999998884 69999997679999999999999999999997 79999999999987543
No 68
>KOG0131|consensus
Probab=98.27 E-value=1.3e-06 Score=68.88 Aligned_cols=79 Identities=14% Similarity=0.173 Sum_probs=68.4
Q ss_pred HHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEecchh
Q psy3067 26 WKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGHRYT 104 (141)
Q Consensus 26 ~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~ss~~ 104 (141)
+++.+||...+.|+-+.+-|+-++++-.-=.|+.|+.+|.+.|+|||-|++.|.+.+|+. .+++++.+|.|.|.-+-.+
T Consensus 98 nlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l~nr~itv~ya~k~ 177 (203)
T KOG0131|consen 98 NLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQYLCNRPITVSYAFKK 177 (203)
T ss_pred cccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhccchhcCCceEEEEEEec
Confidence 456678999999999999999998774334678887889999999999999999999998 6999999999999877553
No 69
>KOG0111|consensus
Probab=98.25 E-value=4.5e-07 Score=73.65 Aligned_cols=76 Identities=17% Similarity=0.077 Sum_probs=69.1
Q ss_pred HHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEecch
Q psy3067 27 KLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGHRY 103 (141)
Q Consensus 27 ~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~ss~ 103 (141)
++++||.-.+||.=+..-|=+++-+. +|.++.|-.++|.+|+|||+|.-.|||..|+. +|...|=||.|.|..+.+
T Consensus 13 lYVGGladeVtekvLhaAFIPFGDI~-dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~AkP 89 (298)
T KOG0111|consen 13 LYVGGLADEVTEKVLHAAFIPFGDIK-DIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLAKP 89 (298)
T ss_pred EEeccchHHHHHHHHHhccccccchh-hcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeecCC
Confidence 45689999999999999999996553 69999998889999999999999999999998 799999999999999875
No 70
>KOG0116|consensus
Probab=98.22 E-value=4.3e-06 Score=72.95 Aligned_cols=74 Identities=16% Similarity=0.255 Sum_probs=61.1
Q ss_pred HHHhcCCCCCCHHHHHhhcccCCcc-cccEEEeecCCCCCcceeeEEEeCCHHHHHHHHHHcCCcCCCeeEEEEecc
Q psy3067 27 KLQHTGIVEGKKDDIAQFFDGLEII-SNGITLVEDPFNGRPTGEAYVQFVDKETAELALQKHKERIGHRYIFFTGHR 102 (141)
Q Consensus 27 ~~~~gLp~s~te~DI~~FFs~~~iv-~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~k~~~~i~~RyIeV~~ss 102 (141)
|++++||+++++++|.++|+.++.+ +.+|.+.. ..++.-.+|||+|.+.++++.|+..+...|++|.+-|..-.
T Consensus 291 i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~--~~~~~~~fgFV~f~~~~~~~~~i~Asp~~ig~~kl~Veek~ 365 (419)
T KOG0116|consen 291 IFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRS--PGGKNPCFGFVEFENAAAVQNAIEASPLEIGGRKLNVEEKR 365 (419)
T ss_pred eEeecCCCCCCHHHHHHHHhhcccccccceEEec--cCCCcCceEEEEEeecchhhhhhhcCccccCCeeEEEEecc
Confidence 7889999999999999999999655 45555544 23433399999999999999999999999999988877543
No 71
>KOG4212|consensus
Probab=98.15 E-value=1.9e-06 Score=75.61 Aligned_cols=68 Identities=21% Similarity=0.157 Sum_probs=58.8
Q ss_pred HHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEE
Q psy3067 26 WKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFT 99 (141)
Q Consensus 26 ~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~ 99 (141)
.||++||||++|.+-+++-|..|+-|. .+.| + .+|+++| -|.|.++++|+.|.. +++..+.+|.|.|.
T Consensus 538 qIiirNlP~dfTWqmlrDKfre~G~v~-yadi-m--e~GkskG--VVrF~s~edAEra~a~Mngs~l~Gr~I~V~ 606 (608)
T KOG4212|consen 538 QIIIRNLPFDFTWQMLRDKFREIGHVL-YADI-M--ENGKSKG--VVRFFSPEDAERACALMNGSRLDGRNIKVT 606 (608)
T ss_pred EEEEecCCccccHHHHHHHHHhcccee-hhhh-h--ccCCccc--eEEecCHHHHHHHHHHhccCcccCceeeee
Confidence 368899999999999999999996553 3444 2 4799998 899999999999999 69999999999985
No 72
>KOG1548|consensus
Probab=98.09 E-value=4.6e-06 Score=71.00 Aligned_cols=76 Identities=17% Similarity=0.311 Sum_probs=68.9
Q ss_pred HHHhcCCCCCCHHHHHhhcccCCccccc-------EEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEE
Q psy3067 27 KLQHTGIVEGKKDDIAQFFDGLEIISNG-------ITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFF 98 (141)
Q Consensus 27 ~~~~gLp~s~te~DI~~FFs~~~iv~~~-------I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV 98 (141)
|+++|||-++|.+++.++|+-|+|+..+ |.|-.| .+|+.+|.|.+.|--.|++..|++ +|...+.|+.|.|
T Consensus 137 VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd-~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg~~~rV 215 (382)
T KOG1548|consen 137 VYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRD-NQGKLKGDALCCYIKRESVELAIKILDEDELRGKKLRV 215 (382)
T ss_pred EEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEec-CCCCccCceEEEeecccHHHHHHHHhCcccccCcEEEE
Confidence 6789999999999999999999887423 677777 789999999999999999999999 5999999999999
Q ss_pred Eecch
Q psy3067 99 TGHRY 103 (141)
Q Consensus 99 ~~ss~ 103 (141)
..+..
T Consensus 216 erAkf 220 (382)
T KOG1548|consen 216 ERAKF 220 (382)
T ss_pred ehhhh
Confidence 99875
No 73
>KOG0226|consensus
Probab=98.08 E-value=1.6e-06 Score=71.31 Aligned_cols=79 Identities=18% Similarity=0.210 Sum_probs=67.1
Q ss_pred HHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEecchh
Q psy3067 26 WKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGHRYT 104 (141)
Q Consensus 26 ~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~ss~~ 104 (141)
.|+-+-|-=.++++-+..-|+.+.-- ....++.|+.+|+++|++||.|.+++|+..||+ +++.+.|.|.|.+-.+.+.
T Consensus 192 RIfcgdlgNevnd~vl~raf~Kfpsf-~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpiklRkS~wk 270 (290)
T KOG0226|consen 192 RIFCGDLGNEVNDDVLARAFKKFPSF-QKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKLRKSEWK 270 (290)
T ss_pred eeecccccccccHHHHHHHHHhccch-hhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhHhhhhhHH
Confidence 45556666668888888888887444 357888998999999999999999999999998 7999999999999988886
Q ss_pred h
Q psy3067 105 V 105 (141)
Q Consensus 105 ~ 105 (141)
+
T Consensus 271 e 271 (290)
T KOG0226|consen 271 E 271 (290)
T ss_pred h
Confidence 5
No 74
>KOG0109|consensus
Probab=98.04 E-value=7.6e-06 Score=68.60 Aligned_cols=100 Identities=14% Similarity=0.146 Sum_probs=82.1
Q ss_pred HHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEecchh
Q psy3067 26 WKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGHRYT 104 (141)
Q Consensus 26 ~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~ss~~ 104 (141)
++|++|||-.+++.+|+..|+.++-|- .+-|+++ +|||..++...+..|+. +|+-.|++-.|.|..++.+
T Consensus 4 KLFIGNLp~~~~~~elr~lFe~ygkVl-ECDIvKN--------YgFVHiEdktaaedairNLhgYtLhg~nInVeaSksK 74 (346)
T KOG0109|consen 4 KLFIGNLPREATEQELRSLFEQYGKVL-ECDIVKN--------YGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSK 74 (346)
T ss_pred chhccCCCcccchHHHHHHHHhhCceE-eeeeecc--------cceEEeecccccHHHHhhcccceecceEEEEEecccc
Confidence 689999999999999999999996442 3888888 99999999999999999 7999999999999988776
Q ss_pred hcccCCCCCCCCcccCCCCCCCCCCCCCCC
Q psy3067 105 VQHRAPRCETSIPVSSSTHKPGRHHTLDGP 134 (141)
Q Consensus 105 ~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~ 134 (141)
.+.+..-.+-++-+.|+-.+++-+--=+||
T Consensus 75 sk~stkl~vgNis~tctn~ElRa~fe~ygp 104 (346)
T KOG0109|consen 75 SKASTKLHVGNISPTCTNQELRAKFEKYGP 104 (346)
T ss_pred CCCccccccCCCCccccCHHHhhhhcccCC
Confidence 555555556777888888877744333333
No 75
>KOG0147|consensus
Probab=98.00 E-value=5.3e-06 Score=73.82 Aligned_cols=84 Identities=17% Similarity=0.234 Sum_probs=73.6
Q ss_pred ecHHHHHHHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHHHcCCcCCCeeEEE
Q psy3067 19 VRRQEMDWKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQKHKERIGHRYIFF 98 (141)
Q Consensus 19 ~~~~d~~~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~k~~~~i~~RyIeV 98 (141)
..+.|..-+|.--|+-.+++.||.+||+-.+.|. +|+|+.|+.+++++|.|||+|-+.+.+..|+...++.+.|-+|-|
T Consensus 174 ~eERd~Rtvf~~qla~r~~pRdL~efFs~~gkVr-dVriI~Dr~s~rskgi~Yvef~D~~sVp~aiaLsGqrllg~pv~v 252 (549)
T KOG0147|consen 174 PEERDQRTVFCMQLARRNPPRDLEEFFSIVGKVR-DVRIIGDRNSRRSKGIAYVEFCDEQSVPLAIALSGQRLLGVPVIV 252 (549)
T ss_pred chHHhHHHHHHHHHhhcCCchhHHHHHHhhcCcc-eeEeeccccchhhcceeEEEEecccchhhHhhhcCCcccCceeEe
Confidence 3455565666666777888999999999998884 799999999999999999999999999999999999999999999
Q ss_pred Eecch
Q psy3067 99 TGHRY 103 (141)
Q Consensus 99 ~~ss~ 103 (141)
.++-.
T Consensus 253 q~sEa 257 (549)
T KOG0147|consen 253 QLSEA 257 (549)
T ss_pred cccHH
Confidence 87654
No 76
>KOG0415|consensus
Probab=97.86 E-value=1e-05 Score=69.46 Aligned_cols=68 Identities=21% Similarity=0.261 Sum_probs=61.5
Q ss_pred CCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEecch
Q psy3067 35 EGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGHRY 103 (141)
Q Consensus 35 s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~ss~ 103 (141)
-+|++|+--.||.+|.+ .++.++.|+.+|-+.-+|||+|.+.+++++|.= ++.-.|++|.|-|..+-.
T Consensus 250 VTtDeDLeiIFSrFG~i-~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDFSQS 318 (479)
T KOG0415|consen 250 VTTDEDLEIIFSRFGKI-VSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDFSQS 318 (479)
T ss_pred cccccchhhHHhhcccc-eeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEeehhhh
Confidence 34899999999999888 479999999999999999999999999999984 699999999999988743
No 77
>KOG0146|consensus
Probab=97.85 E-value=3.2e-05 Score=64.52 Aligned_cols=68 Identities=19% Similarity=0.266 Sum_probs=59.9
Q ss_pred HHHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCC-cCCCe
Q psy3067 25 DWKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKE-RIGHR 94 (141)
Q Consensus 25 ~~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~-~i~~R 94 (141)
.++|++=|...-+|+|++..|++++.++ .+.++.. .+|.++|.|||.|.+..+|+.|+. .|+. .|-|-
T Consensus 20 rklfvgml~kqq~e~dvrrlf~pfG~~~-e~tvlrg-~dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGA 89 (371)
T KOG0146|consen 20 RKLFVGMLNKQQSEDDVRRLFQPFGNIE-ECTVLRG-PDGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGA 89 (371)
T ss_pred hhhhhhhhcccccHHHHHHHhcccCCcc-eeEEecC-CCCCCCCceEEEeccchHHHHHHHHhcccccCCCC
Confidence 3889999999999999999999998884 7999888 899999999999999999999998 6764 55543
No 78
>KOG0110|consensus
Probab=97.85 E-value=5.3e-06 Score=75.65 Aligned_cols=77 Identities=16% Similarity=0.185 Sum_probs=61.6
Q ss_pred HHHHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEec
Q psy3067 24 MDWKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGH 101 (141)
Q Consensus 24 ~~~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~s 101 (141)
+.+|+++|+||.++..+|++.|..+|-+. +|+|+.-...+..+|+|||.|-++.+|..|+. ....++=||.+=+.-+
T Consensus 613 ~tKIlVRNipFeAt~rEVr~LF~aFGqlk-svRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al~STHlyGRrLVLEwA 690 (725)
T KOG0110|consen 613 GTKILVRNIPFEATKREVRKLFTAFGQLK-SVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDALGSTHLYGRRLVLEWA 690 (725)
T ss_pred cceeeeeccchHHHHHHHHHHHhccccee-eeccchhhcchhhccceeeeccCcHHHHHHHHhhcccceechhhheehh
Confidence 45788999999999999999999997663 69998754567789999999999999999997 4555566665544433
No 79
>KOG0128|consensus
Probab=97.83 E-value=2.9e-06 Score=78.63 Aligned_cols=70 Identities=20% Similarity=0.214 Sum_probs=57.6
Q ss_pred HHHHHHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHHHc-CCcCC
Q psy3067 22 QEMDWKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQKH-KERIG 92 (141)
Q Consensus 22 ~d~~~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~k~-~~~i~ 92 (141)
.+...+|.++|+..+.+.|+..+|+..++++ .|++..-..+|+++|.|||+|..++++.+|+..+ ....+
T Consensus 665 R~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e-~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~g 735 (881)
T KOG0128|consen 665 RDLIKIFVSNLSPKMSEEDLSERFSPSGTIE-VVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFFG 735 (881)
T ss_pred HHHHHHHHhhcchhhcCchhhhhcCccchhh-hHHHHHHhhccccccceeeEeecCCchhhhhhhhhhhhhh
Confidence 5667889999999999999999999987774 4555422357999999999999999999999964 44555
No 80
>KOG0105|consensus
Probab=97.73 E-value=3.5e-05 Score=61.34 Aligned_cols=72 Identities=19% Similarity=0.106 Sum_probs=58.8
Q ss_pred HHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEecc
Q psy3067 27 KLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGHR 102 (141)
Q Consensus 27 ~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~ss 102 (141)
|..+|||-++.++||.+.|..++-+- .|.|.. . =.+-.+|||+|+++.||+.|+. +|+--+++-.+.|....
T Consensus 9 iyvGNLP~diRekeieDlFyKyg~i~-~ieLK~--r-~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfpr 81 (241)
T KOG0105|consen 9 IYVGNLPGDIREKEIEDLFYKYGRIR-EIELKN--R-PGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPR 81 (241)
T ss_pred EEecCCCcchhhccHHHHHhhhcceE-EEEecc--C-CCCCCeeEEEecCccchhhhhhcccccccCcceEEEEecc
Confidence 56789999999999999999996552 355432 2 2356799999999999999998 79999999888888764
No 81
>KOG0109|consensus
Probab=97.67 E-value=6.7e-05 Score=63.02 Aligned_cols=77 Identities=14% Similarity=0.090 Sum_probs=65.8
Q ss_pred HHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEecchh
Q psy3067 26 WKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGHRYT 104 (141)
Q Consensus 26 ~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~ss~~ 104 (141)
++.++|+.+.|+.++++.-|..++.|- .+.|+.| ++||.|.-.++|..|++ +|+..+.|+.+.|..++.
T Consensus 80 kl~vgNis~tctn~ElRa~fe~ygpvi-ecdivkd--------y~fvh~d~~eda~~air~l~~~~~~gk~m~vq~sts- 149 (346)
T KOG0109|consen 80 KLHVGNISPTCTNQELRAKFEKYGPVI-ECDIVKD--------YAFVHFDRAEDAVEAIRGLDNTEFQGKRMHVQLSTS- 149 (346)
T ss_pred ccccCCCCccccCHHHhhhhcccCCce-eeeeecc--------eeEEEEeeccchHHHHhcccccccccceeeeeeecc-
Confidence 567789999999999999999998773 5788887 99999999999999998 799999999999999876
Q ss_pred hcccCCCC
Q psy3067 105 VQHRAPRC 112 (141)
Q Consensus 105 ~~~~~~~~ 112 (141)
...+++.+
T Consensus 150 rlrtapgm 157 (346)
T KOG0109|consen 150 RLRTAPGM 157 (346)
T ss_pred ccccCCCC
Confidence 23444443
No 82
>KOG4849|consensus
Probab=97.66 E-value=2.2e-05 Score=67.51 Aligned_cols=78 Identities=9% Similarity=0.073 Sum_probs=68.3
Q ss_pred HHHHhcCCCCCCHHHHHhhcccCCccc-ccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEecch
Q psy3067 26 WKLQHTGIVEGKKDDIAQFFDGLEIIS-NGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGHRY 103 (141)
Q Consensus 26 ~~~~~gLp~s~te~DI~~FFs~~~iv~-~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~ss~ 103 (141)
|++++||-|.+|++|+.+-....++.+ .++.+..++.+|+++|+|.|...|+.++++.|+ .-...|+|..=.|..|+.
T Consensus 82 ~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~~~NK 161 (498)
T KOG4849|consen 82 CCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVLSYNK 161 (498)
T ss_pred EEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeeeccch
Confidence 678899999999999999999876543 347788888999999999999999999999999 578899999888888875
No 83
>KOG0124|consensus
Probab=97.64 E-value=5.5e-05 Score=65.41 Aligned_cols=97 Identities=13% Similarity=0.178 Sum_probs=76.2
Q ss_pred CcCCCCceeEEEEEecHH-H--------------HHHHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCccee
Q psy3067 5 RTGEVSDRYIEVFKVRRQ-E--------------MDWKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGE 69 (141)
Q Consensus 5 ~~~~ig~RyIEv~~~~~~-d--------------~~~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~ 69 (141)
|.+.||.|-|-|=..++- . ++-+++..++-+.+|+||+.-|+.++.+. .+.+..++..+..+|+
T Consensus 176 Ng~mlGGRNiKVgrPsNmpQAQpiID~vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~-~C~LAr~pt~~~HkGy 254 (544)
T KOG0124|consen 176 NGQMLGGRNIKVGRPSNMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIV-KCQLARAPTGRGHKGY 254 (544)
T ss_pred ccccccCccccccCCCCCcccchHHHHHHHHHHhhheEEeeecCCCccHHHHHHHHHhhccee-eEEeeccCCCCCccce
Confidence 456677777776554431 1 11123346788999999999999996442 4999999777799999
Q ss_pred eEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEecc
Q psy3067 70 AYVQFVDKETAELALQ-KHKERIGHRYIFFTGHR 102 (141)
Q Consensus 70 afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~ss 102 (141)
+|++|.+....+.|+. +|---+||.|+.|-.|-
T Consensus 255 GfiEy~n~qs~~eAiasMNlFDLGGQyLRVGk~v 288 (544)
T KOG0124|consen 255 GFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCV 288 (544)
T ss_pred eeEEeccccchHHHhhhcchhhcccceEeccccc
Confidence 9999999999999998 68889999999999884
No 84
>KOG1995|consensus
Probab=97.60 E-value=3.7e-05 Score=65.49 Aligned_cols=80 Identities=21% Similarity=0.165 Sum_probs=70.3
Q ss_pred HHHHHHhcCCCCCCHHHHHhhcccCCccc-------ccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCee
Q psy3067 24 MDWKLQHTGIVEGKKDDIAQFFDGLEIIS-------NGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRY 95 (141)
Q Consensus 24 ~~~~~~~gLp~s~te~DI~~FFs~~~iv~-------~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~Ry 95 (141)
...+++-+||-++++++|.+||..|++++ --|.|-+|+.|++++|+|-|.|.++..|+.|+. .+++.+.+-.
T Consensus 66 ~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~gn~ 145 (351)
T KOG1995|consen 66 NETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFCGNT 145 (351)
T ss_pred cccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccccccCCC
Confidence 34677889999999999999999999873 247788899999999999999999999999999 6888888899
Q ss_pred EEEEecch
Q psy3067 96 IFFTGHRY 103 (141)
Q Consensus 96 IeV~~ss~ 103 (141)
|+|.++..
T Consensus 146 ikvs~a~~ 153 (351)
T KOG1995|consen 146 IKVSLAER 153 (351)
T ss_pred chhhhhhh
Confidence 99998854
No 85
>KOG0146|consensus
Probab=97.57 E-value=6.3e-05 Score=62.82 Aligned_cols=76 Identities=18% Similarity=0.149 Sum_probs=64.5
Q ss_pred HHhcCCCCCCHHHHHhhcccCC-cccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEecchhh
Q psy3067 28 LQHTGIVEGKKDDIAQFFDGLE-IISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGHRYTV 105 (141)
Q Consensus 28 ~~~gLp~s~te~DI~~FFs~~~-iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~ss~~~ 105 (141)
|+--||-...+.||.+.|-+++ ||. ..+..|+.+..++-|+||.|+++..++.|++ +|+--||-+.+.|..-++++
T Consensus 289 FIYHLPQEFgDaEliQmF~PFGhivS--aKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLKVQLKRPkd 366 (371)
T KOG0146|consen 289 FIYHLPQEFGDAELIQMFLPFGHIVS--AKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQLKRPKD 366 (371)
T ss_pred EEEeCchhhccHHHHHHhccccceee--eeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhhhhhcCccc
Confidence 3345899999999999999995 654 7888888999999999999999999999998 79999998888777655533
No 86
>KOG4210|consensus
Probab=97.45 E-value=5.8e-05 Score=62.78 Aligned_cols=74 Identities=24% Similarity=0.299 Sum_probs=65.2
Q ss_pred HhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHHHcCCcCCCeeEEEEecch
Q psy3067 29 QHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQKHKERIGHRYIFFTGHRY 103 (141)
Q Consensus 29 ~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~k~~~~i~~RyIeV~~ss~ 103 (141)
+.+++|+++++||..+|..++-+. .|+++.++.+|...|+|||.|.+-....+|+.-....+++|++-+.....
T Consensus 190 ~~~~~f~~~~d~~~~~~~~~~~i~-~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (285)
T KOG4210|consen 190 VGELDFSLTRDDLKEHFVSSGEIT-SVRLPTDEESGDSKGFAYVDFSAGNSKKLALNDQTRSIGGRPLRLEEDEP 263 (285)
T ss_pred ecccccccchHHHhhhccCcCcce-eeccCCCCCccchhhhhhhhhhhchhHHHHhhcccCcccCcccccccCCC
Confidence 679999999999999999996553 59999998999999999999999999998887778899999988877655
No 87
>KOG0153|consensus
Probab=97.38 E-value=0.00019 Score=61.29 Aligned_cols=66 Identities=27% Similarity=0.228 Sum_probs=54.5
Q ss_pred hcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHHH--cCCcCCCeeEEEEecc
Q psy3067 30 HTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQK--HKERIGHRYIFFTGHR 102 (141)
Q Consensus 30 ~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~k--~~~~i~~RyIeV~~ss 102 (141)
+||--.++|.||+++|-.||-+. +|.++.. . |-|||+|.+.++|++|..+ +.-.|+|+.|.|.=.+
T Consensus 234 g~l~d~v~e~dIrdhFyqyGeir-si~~~~~--~----~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~Wg~ 301 (377)
T KOG0153|consen 234 GGLNDEVLEQDIRDHFYQYGEIR-SIRILPR--K----GCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIKWGR 301 (377)
T ss_pred cccccchhHHHHHHHHhhcCCee-eEEeecc--c----ccceeeehhhHHHHHHHHhhcceeeecceEEEEEeCC
Confidence 46655889999999999998774 6777664 2 4899999999999999985 7778999999998433
No 88
>KOG4661|consensus
Probab=97.19 E-value=0.00054 Score=62.24 Aligned_cols=75 Identities=12% Similarity=0.156 Sum_probs=63.5
Q ss_pred HHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEecc
Q psy3067 27 KLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGHR 102 (141)
Q Consensus 27 ~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~ss 102 (141)
+.++||+-++-..||++.|+.|+-| .+..++.+..+=-.+-++||.+.+.++|.+.+. +|+..|+||-|.|..+.
T Consensus 408 lWVSGLSstTRAtDLKnlFSKyGKV-vGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEkaK 483 (940)
T KOG4661|consen 408 LWVSGLSSTTRATDLKNLFSKYGKV-VGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKAK 483 (940)
T ss_pred eeeeccccchhhhHHHHHHHHhcce-eceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeecc
Confidence 4557899999999999999999755 368888883333455699999999999999999 69999999999999875
No 89
>KOG0132|consensus
Probab=97.17 E-value=0.00058 Score=63.43 Aligned_cols=68 Identities=24% Similarity=0.308 Sum_probs=58.2
Q ss_pred HHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHHH-cCCcCCCeeEEEEec
Q psy3067 27 KLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQK-HKERIGHRYIFFTGH 101 (141)
Q Consensus 27 ~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~k-~~~~i~~RyIeV~~s 101 (141)
+++++||-+++|.||++.|+.|+-+. +|.++-. +|.|||.+.+..+|.+||++ ....+.++.|.|.=+
T Consensus 424 LwvG~i~k~v~e~dL~~~feefGeiq-Si~li~~------R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa 492 (894)
T KOG0132|consen 424 LWVGGIPKNVTEQDLANLFEEFGEIQ-SIILIPP------RGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWA 492 (894)
T ss_pred eeeccccchhhHHHHHHHHHhcccce-eEeeccC------CceeEEEEeehhHHHHHHHHHhcccccceeeEEeee
Confidence 46679999999999999999998774 6776654 58999999999999999984 788899999987654
No 90
>KOG4206|consensus
Probab=96.87 E-value=0.002 Score=52.06 Aligned_cols=73 Identities=19% Similarity=0.166 Sum_probs=59.7
Q ss_pred HHHHhcCCCCCCHHHHHh----hcccCC-cccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEE
Q psy3067 26 WKLQHTGIVEGKKDDIAQ----FFDGLE-IISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFT 99 (141)
Q Consensus 26 ~~~~~gLp~s~te~DI~~----FFs~~~-iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~ 99 (141)
.+++++|.=-+..++++. .|+.|+ |++ |.. - .+.+.+|.|||.|.+.+.|..|+. +++-.+=|.++.|.
T Consensus 11 TlYInnLnekI~~~elkrsL~~LFsqfG~ild--I~a--~-kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mriq 85 (221)
T KOG4206|consen 11 TLYINNLNEKIKKDELKRSLYLLFSQFGKILD--ISA--F-KTPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRIQ 85 (221)
T ss_pred eEeehhccccccHHHHHHHHHHHHHhhCCeEE--EEe--c-CCCCccCceEEEecChhHHHHHHHHhcCCcccCchhhee
Confidence 356678888888899888 999997 543 443 3 578999999999999999999998 58888888999888
Q ss_pred ecch
Q psy3067 100 GHRY 103 (141)
Q Consensus 100 ~ss~ 103 (141)
-+..
T Consensus 86 yA~s 89 (221)
T KOG4206|consen 86 YAKS 89 (221)
T ss_pred cccC
Confidence 7753
No 91
>KOG0106|consensus
Probab=96.81 E-value=0.00039 Score=56.00 Aligned_cols=66 Identities=17% Similarity=0.257 Sum_probs=49.9
Q ss_pred HHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEe
Q psy3067 26 WKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTG 100 (141)
Q Consensus 26 ~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~ 100 (141)
.++++.|||.+.+.||-.||.+++-+. +|.+.. |++||+|.++.+|..|+- .|+..|.+=.+-|..
T Consensus 3 rv~vg~~~~~~~~~d~E~~f~~yg~~~-d~~mk~--------gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~ 69 (216)
T KOG0106|consen 3 RVYIGRLPYRARERDVERFFKGYGKIP-DADMKN--------GFGFVEFEDPRDADDAVHDLDGKELCGERLVVEH 69 (216)
T ss_pred ceeecccCCccchhHHHHHHhhccccc-cceeec--------ccceeccCchhhhhcccchhcCceecceeeeeec
Confidence 467789999999999999999997664 344422 688999999999999996 566655543333333
No 92
>KOG0128|consensus
Probab=96.65 E-value=0.0015 Score=61.01 Aligned_cols=96 Identities=14% Similarity=0.100 Sum_probs=77.6
Q ss_pred cCCCCceeEEEEEecHHH------------HHHHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEE
Q psy3067 6 TGEVSDRYIEVFKVRRQE------------MDWKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQ 73 (141)
Q Consensus 6 ~~~ig~RyIEv~~~~~~d------------~~~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~ 73 (141)
+..=|.-|+|+....... ...++.+|.||.+|.++++..++..+.+. +.+++.. ..|+|+|.|||.
T Consensus 706 ~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~gK~~v~i~g~pf~gt~e~~k~l~~~~gn~~-~~~~vt~-r~gkpkg~a~v~ 783 (881)
T KOG0128|consen 706 KRFRGKAYVEFLKPEHAGAAVAFRDSCFFGKISVAISGPPFQGTKEELKSLASKTGNVT-SLRLVTV-RAGKPKGKARVD 783 (881)
T ss_pred cccccceeeEeecCCchhhhhhhhhhhhhhhhhhheeCCCCCCchHHHHhhccccCCcc-ccchhhh-hccccccceecc
Confidence 334467788876654332 12457789999999999999999997774 6788888 899999999999
Q ss_pred eCCHHHHHHHHH-HcCCcCCCeeEEEEecch
Q psy3067 74 FVDKETAELALQ-KHKERIGHRYIFFTGHRY 103 (141)
Q Consensus 74 F~s~e~a~~AL~-k~~~~i~~RyIeV~~ss~ 103 (141)
|.++.++.+++. .+...+.-+-++|..+++
T Consensus 784 y~~ea~~s~~~~s~d~~~~rE~~~~v~vsnp 814 (881)
T KOG0128|consen 784 YNTEADASRKVASVDVAGKRENNGEVQVSNP 814 (881)
T ss_pred CCCcchhhhhcccchhhhhhhcCccccccCC
Confidence 999999999987 588888888888887765
No 93
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=96.64 E-value=0.0072 Score=42.99 Aligned_cols=65 Identities=15% Similarity=0.032 Sum_probs=52.2
Q ss_pred HHHhcCCCCCCHHHHHhhcccC--CcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCC
Q psy3067 27 KLQHTGIVEGKKDDIAQFFDGL--EIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIG 92 (141)
Q Consensus 27 ~~~~gLp~s~te~DI~~FFs~~--~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~ 92 (141)
++.||+|-..|.+++.+.+... +-- +=+-++.|..++...|+|||-|.++++|.+-.+ .|+....
T Consensus 4 vMirNIPn~~t~~~L~~~l~~~~~g~y-DF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~ 71 (97)
T PF04059_consen 4 VMIRNIPNKYTQEMLIQILDEHFKGKY-DFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWP 71 (97)
T ss_pred EEEecCCCCCCHHHHHHHHHHhccCcc-eEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccc
Confidence 4678999999999999988764 222 346678887889999999999999999988776 4766554
No 94
>KOG0129|consensus
Probab=96.56 E-value=0.005 Score=54.92 Aligned_cols=58 Identities=14% Similarity=0.163 Sum_probs=46.0
Q ss_pred HHHHhcCCCCCCHHHHHhhcccCCcccccEEEeec-CCCC--Ccce---eeEEEeCCHHHHHHHHH
Q psy3067 26 WKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVED-PFNG--RPTG---EAYVQFVDKETAELALQ 85 (141)
Q Consensus 26 ~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d-~~~G--r~~G---~afV~F~s~e~a~~AL~ 85 (141)
+||.+||||+.+|+.|..+|..|+.+. |..+.. ...+ -++| ++|..|+++..++.-|.
T Consensus 261 KVFvGGlp~dise~~i~~~F~~FGs~~--VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~ 324 (520)
T KOG0129|consen 261 KVFVGGLPWDITEAQINASFGQFGSVK--VDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLS 324 (520)
T ss_pred ceeecCCCccccHHHHHhhcccccceE--eecCCCccccccCCCCCcccEEEEEecchHHHHHHHH
Confidence 678899999999999999999998775 555421 0112 4667 99999999999888776
No 95
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=96.53 E-value=0.0043 Score=44.42 Aligned_cols=65 Identities=25% Similarity=0.279 Sum_probs=34.8
Q ss_pred hcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHHH---c---CCcCCCeeEEEEec
Q psy3067 30 HTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQK---H---KERIGHRYIFFTGH 101 (141)
Q Consensus 30 ~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~k---~---~~~i~~RyIeV~~s 101 (141)
.|++-.++.+||++.|+.++.| ..+-- ..|.. +|||.|.++++|++|+++ . .-.|.+-.+.+..-
T Consensus 7 ~g~~~~~~re~iK~~f~~~g~V----~yVD~-~~G~~--~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~vL 77 (105)
T PF08777_consen 7 SGLGEPTSREDIKEAFSQFGEV----AYVDF-SRGDT--EGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLEVL 77 (105)
T ss_dssp EE--SS--HHHHHHHT-SS--E----EEEE---TT-S--EEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE--
T ss_pred ecCCCCcCHHHHHHHHHhcCCc----ceEEe-cCCCC--EEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEEEC
Confidence 3577788999999999999854 33332 34443 689999999999999984 2 23456655555443
No 96
>KOG4454|consensus
Probab=96.49 E-value=0.0031 Score=51.44 Aligned_cols=74 Identities=14% Similarity=0.046 Sum_probs=65.3
Q ss_pred HHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHHH-cCCcCCCeeEEEEecc
Q psy3067 26 WKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQK-HKERIGHRYIFFTGHR 102 (141)
Q Consensus 26 ~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~k-~~~~i~~RyIeV~~ss 102 (141)
.+++.++--.++|+-|-+.|-.-|+| -.|.|..+ ++++++ ||||.|.++-.+.-|+++ |+-.+-++.|.|.+-+
T Consensus 11 tl~v~n~~~~v~eelL~ElfiqaGPV-~kv~ip~~-~d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~r~ 85 (267)
T KOG4454|consen 11 TLLVQNMYSGVSEELLSELFIQAGPV-YKVGIPSG-QDQEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRTLRC 85 (267)
T ss_pred HHHHHhhhhhhhHHHHHHHhhccCce-EEEeCCCC-ccCCCc-eeeeecccccchhhhhhhcccchhccchhhccccc
Confidence 68889999999999999999998766 24888888 889999 999999999999999994 9999999998887754
No 97
>KOG0120|consensus
Probab=96.43 E-value=0.0039 Score=55.70 Aligned_cols=79 Identities=14% Similarity=0.244 Sum_probs=70.8
Q ss_pred HHHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEecch
Q psy3067 25 DWKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGHRY 103 (141)
Q Consensus 25 ~~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~ss~ 103 (141)
..++++|||...+++.+++....++.+. +-.++.|..+|.++|+||.+|-++.....|.+ .|+..+++..+-|..+..
T Consensus 290 ~ki~v~~lp~~l~~~q~~Ell~~fg~lk-~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A~~ 368 (500)
T KOG0120|consen 290 NKIFVGGLPLYLTEDQVKELLDSFGPLK-AFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRAIV 368 (500)
T ss_pred chhhhccCcCccCHHHHHHHHHhcccch-hheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeehhhc
Confidence 4678899999999999999999998774 78899997789999999999999999999998 799999999998888765
Q ss_pred h
Q psy3067 104 T 104 (141)
Q Consensus 104 ~ 104 (141)
.
T Consensus 369 g 369 (500)
T KOG0120|consen 369 G 369 (500)
T ss_pred c
Confidence 3
No 98
>KOG0151|consensus
Probab=96.11 E-value=0.013 Score=54.39 Aligned_cols=75 Identities=11% Similarity=0.034 Sum_probs=60.8
Q ss_pred HHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCC---CCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEec
Q psy3067 26 WKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFN---GRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGH 101 (141)
Q Consensus 26 ~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~---Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~s 101 (141)
++.++||+-+++++.+..-|..|+++. +|.|+.-+.. -+..-.+||.|.+..||++||+ +++..+-.+.+.+--.
T Consensus 176 Nlyv~Nlnpsv~E~~ll~tfGrfgPla-svKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K~gWg 254 (877)
T KOG0151|consen 176 NLYVGNLNPSVDENFLLRTFGRFGPLA-SVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMKLGWG 254 (877)
T ss_pred ceeeecCCccccHHHHHHHhcccCccc-ceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeeeeccc
Confidence 567789999999999999999999884 7888775222 3667789999999999999998 5777777777665544
No 99
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=96.01 E-value=0.019 Score=36.18 Aligned_cols=39 Identities=23% Similarity=0.408 Sum_probs=28.4
Q ss_pred HHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHH
Q psy3067 39 DDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELAL 84 (141)
Q Consensus 39 ~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL 84 (141)
++|+.+|+.||-+. .+.+. ..+-..||.|.++.+|++||
T Consensus 15 ~~vl~~F~~fGeI~-~~~~~------~~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 15 EEVLEHFASFGEIV-DIYVP------ESTNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred HHHHHHHHhcCCEE-EEEcC------CCCcEEEEEECCHHHHHhhC
Confidence 66777999996542 24443 12237999999999999996
No 100
>KOG4660|consensus
Probab=95.96 E-value=0.0046 Score=55.50 Aligned_cols=63 Identities=22% Similarity=0.246 Sum_probs=54.2
Q ss_pred HhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEE
Q psy3067 29 QHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIF 97 (141)
Q Consensus 29 ~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIe 97 (141)
+-+||-++++++|+..|+-+|-|. +|+.-. ...|.+||+|-+..+|+.||+ .++..|.++.|.
T Consensus 80 v~nl~~~Vsn~~L~~~f~~yGeir-~ir~t~-----~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 80 VFNLPRSVSNDTLLRIFGAYGEIR-EIRETP-----NKRGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred EEecCCcCCHHHHHHHHHhhcchh-hhhccc-----ccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 348999999999999999998775 477444 456899999999999999998 699999999887
No 101
>KOG1457|consensus
Probab=95.87 E-value=0.046 Score=44.88 Aligned_cols=78 Identities=13% Similarity=0.058 Sum_probs=56.1
Q ss_pred HHHHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCC-cceeeEEEeCCHHHHHHHHH-HcCCcCC---CeeEEE
Q psy3067 24 MDWKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGR-PTGEAYVQFVDKETAELALQ-KHKERIG---HRYIFF 98 (141)
Q Consensus 24 ~~~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr-~~G~afV~F~s~e~a~~AL~-k~~~~i~---~RyIeV 98 (141)
+.-+|+.|||-+++..+|...|.+|.-- ++.+|-+.-..++ -+=.|||.|.|..+|..|+. .|+-.++ +..+.|
T Consensus 34 VRTLFVSGLP~DvKpREiynLFR~f~GY-EgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLhi 112 (284)
T KOG1457|consen 34 VRTLFVSGLPNDVKPREIYNLFRRFHGY-EGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLHI 112 (284)
T ss_pred cceeeeccCCcccCHHHHHHHhccCCCc-cceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeEe
Confidence 6678999999999999999999999444 3566655412222 23579999999999999997 5776665 334444
Q ss_pred Eecc
Q psy3067 99 TGHR 102 (141)
Q Consensus 99 ~~ss 102 (141)
..+.
T Consensus 113 ElAK 116 (284)
T KOG1457|consen 113 ELAK 116 (284)
T ss_pred eehh
Confidence 4443
No 102
>KOG0106|consensus
Probab=95.48 E-value=0.0078 Score=48.53 Aligned_cols=67 Identities=16% Similarity=0.213 Sum_probs=53.2
Q ss_pred HHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEecch
Q psy3067 28 LQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGHRY 103 (141)
Q Consensus 28 ~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~ss~ 103 (141)
+..+++-.+.+.||.+.|..++.+.. ..+ ..++++|+|++++++..|+. +++..+.++.|.+.....
T Consensus 103 ~~~~~~~r~~~qdl~d~~~~~g~~~~-~~~--------~~~~~~v~Fs~~~da~ra~~~l~~~~~~~~~l~~~~~~~ 170 (216)
T KOG0106|consen 103 IVRNLSLRVSWQDLKDHFRPAGEVTY-VDA--------RRNFAFVEFSEQEDAKRALEKLDGKKLNGRRISVEKNSR 170 (216)
T ss_pred eeccchhhhhHHHHhhhhcccCCCch-hhh--------hccccceeehhhhhhhhcchhccchhhcCceeeecccCc
Confidence 34567777788999999999987641 111 45699999999999999998 599999999999954433
No 103
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=95.25 E-value=0.044 Score=38.50 Aligned_cols=65 Identities=18% Similarity=0.125 Sum_probs=39.5
Q ss_pred HHhcCCCCCCHHHHHhh----cccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHHH-cCCcCCCeeEEEEecc
Q psy3067 28 LQHTGIVEGKKDDIAQF----FDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQK-HKERIGHRYIFFTGHR 102 (141)
Q Consensus 28 ~~~gLp~s~te~DI~~F----Fs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~k-~~~~i~~RyIeV~~ss 102 (141)
++.|||-+....-|+.- +..||=-- +.| +| |-|.|.|.+++.|++|+++ +++-.-|+.|.|..+.
T Consensus 6 ~V~NLP~~~d~~~I~~RL~qLsdNCGGkV--l~v-----~~---~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~~~~ 75 (90)
T PF11608_consen 6 YVSNLPTNKDPSSIKNRLRQLSDNCGGKV--LSV-----SG---GTAILRFPNQEFAERAQKRMEGEDVFGNKISVSFSP 75 (90)
T ss_dssp EEES--TTS-HHHHHHHHHHHHHTTT--E--EE-------T---T-EEEEESSHHHHHHHHHHHTT--SSSS--EEESS-
T ss_pred EEecCCCCCCHHHHHHHHHHHhhccCCEE--EEE-----eC---CEEEEEeCCHHHHHHHHHhhcccccccceEEEEEcC
Confidence 45689988877776554 44774210 222 22 6899999999999999995 8888888889888763
No 104
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=95.20 E-value=0.05 Score=35.80 Aligned_cols=48 Identities=31% Similarity=0.315 Sum_probs=38.6
Q ss_pred HHhcCCCCCCHHHHHhhcccC----CcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH
Q psy3067 28 LQHTGIVEGKKDDIAQFFDGL----EIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ 85 (141)
Q Consensus 28 ~~~gLp~s~te~DI~~FFs~~----~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~ 85 (141)
..+|+ =+.+.+||.+||+.+ ++. .|..+-| . .|-|.|.+++.|.+||.
T Consensus 9 hirGv-d~lsT~dI~~y~~~y~~~~~~~--~IEWIdD-t------ScNvvf~d~~~A~~AL~ 60 (62)
T PF10309_consen 9 HIRGV-DELSTDDIKAYFSEYFDEEGPF--RIEWIDD-T------SCNVVFKDEETAARALV 60 (62)
T ss_pred EEEcC-CCCCHHHHHHHHHHhcccCCCc--eEEEecC-C------cEEEEECCHHHHHHHHH
Confidence 34554 246789999999999 554 5998888 2 59999999999999996
No 105
>KOG0120|consensus
Probab=95.04 E-value=0.045 Score=49.08 Aligned_cols=64 Identities=14% Similarity=0.225 Sum_probs=47.8
Q ss_pred HHHHhhcccCCcccccEEEeec---CCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEecch
Q psy3067 39 DDIAQFFDGLEIISNGITLVED---PFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGHRY 103 (141)
Q Consensus 39 ~DI~~FFs~~~iv~~~I~i~~d---~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~ss~ 103 (141)
+||+.=++.++++. .|.|+.+ ....-.+|-.||+|++.+++++|++ +++..+.+|.|-..=...
T Consensus 424 Edvr~ec~k~g~v~-~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsYyde 491 (500)
T KOG0120|consen 424 EDVRTECAKFGAVR-SVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASYYDE 491 (500)
T ss_pred HHHHHHhcccCcee-EEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEEEecCH
Confidence 44555566677773 5776554 2335678999999999999999998 799999999876544444
No 106
>KOG0129|consensus
Probab=94.96 E-value=0.045 Score=48.99 Aligned_cols=93 Identities=13% Similarity=0.130 Sum_probs=72.3
Q ss_pred CCCceeEEEEEecHHHHHHH-------------HHhcCCCCCCHHHHHhhcccC-CcccccEEEeecCCCCCcceeeEEE
Q psy3067 8 EVSDRYIEVFKVRRQEMDWK-------------LQHTGIVEGKKDDIAQFFDGL-EIISNGITLVEDPFNGRPTGEAYVQ 73 (141)
Q Consensus 8 ~ig~RyIEv~~~~~~d~~~~-------------~~~gLp~s~te~DI~~FFs~~-~iv~~~I~i~~d~~~Gr~~G~afV~ 73 (141)
-|+.++|.|-++.-.|...+ |++|||=-.|.++|..+|+++ +.| --|-|-.|++-+=|+|-|=|.
T Consensus 341 ~~k~k~VQIrPW~laDs~fv~d~sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV-~yaGIDtD~k~KYPkGaGRVt 419 (520)
T KOG0129|consen 341 TIKDKEVQIRPWVLADSDFVLDHNQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGV-LYVGIDTDPKLKYPKGAGRVT 419 (520)
T ss_pred cccccceeEEeeEeccchhhhccCcccCccceEEecCCCCcchHHHHHHHHHHhcCce-EEEEeccCcccCCCCCcceee
Confidence 46778888888866665433 668999999999999999977 555 257788887788999999999
Q ss_pred eCCHHHHHHHHHH-----cCCcCCCeeEEEEecc
Q psy3067 74 FVDKETAELALQK-----HKERIGHRYIFFTGHR 102 (141)
Q Consensus 74 F~s~e~a~~AL~k-----~~~~i~~RyIeV~~ss 102 (141)
|.+..+..+|+.. +...+.. .|||.|--
T Consensus 420 FsnqqsYi~AIsarFvql~h~d~~K-RVEIkPYv 452 (520)
T KOG0129|consen 420 FSNQQAYIKAISARFVQLDHTDIDK-RVEIKPYV 452 (520)
T ss_pred ecccHHHHHHHhhheEEEeccccce-eeeeccee
Confidence 9999999999973 2333443 56777654
No 107
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=94.23 E-value=0.14 Score=36.53 Aligned_cols=64 Identities=11% Similarity=0.157 Sum_probs=42.2
Q ss_pred CHHHHHhhcccCC-cccccEEEeecCCC-------CCcceeeEEEeCCHHHHHHHHHHcCCcCCCeeEE-EEecc
Q psy3067 37 KKDDIAQFFDGLE-IISNGITLVEDPFN-------GRPTGEAYVQFVDKETAELALQKHKERIGHRYIF-FTGHR 102 (141)
Q Consensus 37 te~DI~~FFs~~~-iv~~~I~i~~d~~~-------Gr~~G~afV~F~s~e~a~~AL~k~~~~i~~RyIe-V~~ss 102 (141)
....|.+.|+.|| |++ ...+..+ .. -.-..-..|.|+++.+|++||++|+..+++-.|- |.+|.
T Consensus 18 ~~~~Vl~~F~~~G~Ile-~~~~~~~-~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~~NG~i~~g~~mvGV~~~~ 90 (100)
T PF05172_consen 18 ASNQVLRHFSSFGTILE-HFEVLRS-SSGINPYPIPSGGNWIHITYDNPLSAQRALQKNGTIFSGSLMVGVKPCD 90 (100)
T ss_dssp GHHHHHHHHHCCS-EEC-EEGGG-----------E-CCTTEEEEEESSHHHHHHHHTTTTEEETTCEEEEEEE-H
T ss_pred HHHHHHHHHHhcceEEE-eeccccc-ccccccccCCCCCCEEEEECCCHHHHHHHHHhCCeEEcCcEEEEEEEcH
Confidence 3477889999996 443 2211111 00 1123467899999999999999999999987665 55553
No 108
>KOG1190|consensus
Probab=94.02 E-value=0.15 Score=44.93 Aligned_cols=66 Identities=14% Similarity=0.142 Sum_probs=57.3
Q ss_pred CCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEecch
Q psy3067 32 GIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGHRY 103 (141)
Q Consensus 32 Lp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~ss~ 103 (141)
-++.+|.+-+-..|+-||-|. .|.|++++. -.|.|++.+...|+.|+. .+++.|-|+.|+|..|+-
T Consensus 306 n~~~VT~d~LftlFgvYGdVq-RVkil~nkk-----d~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SKH 372 (492)
T KOG1190|consen 306 NEEAVTPDVLFTLFGVYGDVQ-RVKILYNKK-----DNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSKH 372 (492)
T ss_pred chhccchhHHHHHHhhhcceE-EEEeeecCC-----cceeeeecchhHHHHHHHHhhcceecCceEEEeeccC
Confidence 366789999999999997663 699998733 369999999999999999 699999999999999863
No 109
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=93.81 E-value=0.2 Score=38.28 Aligned_cols=82 Identities=20% Similarity=0.214 Sum_probs=43.6
Q ss_pred EEEEEecHHHHHHHHHh----cCCCC----------------CCH----HHHHhhcccCCcccccEEEeecCCCCCccee
Q psy3067 14 IEVFKVRRQEMDWKLQH----TGIVE----------------GKK----DDIAQFFDGLEIISNGITLVEDPFNGRPTGE 69 (141)
Q Consensus 14 IEv~~~~~~d~~~~~~~----gLp~s----------------~te----~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~ 69 (141)
|||++++.+..+.+++- =.|-+ .-. +++.+-|+.+|.+- -|+++. +.
T Consensus 2 Iev~~Vd~~~r~~Vf~eVi~~~GPpDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~Gevv-LvRfv~--------~~ 72 (146)
T PF08952_consen 2 IEVQEVDEEKRESVFEEVISSQGPPDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVV-LVRFVG--------DT 72 (146)
T ss_dssp ------------------S-----TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-EC-EEEEET--------TC
T ss_pred ccEEEeCHHHHHHHHHHHHHhcCCCCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceE-EEEEeC--------Ce
Confidence 78888888777666551 11111 112 36788888887541 244443 37
Q ss_pred eEEEeCCHHHHHHHHHHcCCcCCCeeEEEEecchh
Q psy3067 70 AYVQFVDKETAELALQKHKERIGHRYIFFTGHRYT 104 (141)
Q Consensus 70 afV~F~s~e~a~~AL~k~~~~i~~RyIeV~~ss~~ 104 (141)
-+|.|.+-+.|-+||++++..++|+.|.|.+-+++
T Consensus 73 mwVTF~dg~sALaals~dg~~v~g~~l~i~LKtpd 107 (146)
T PF08952_consen 73 MWVTFRDGQSALAALSLDGIQVNGRTLKIRLKTPD 107 (146)
T ss_dssp EEEEESSCHHHHHHHHGCCSEETTEEEEEEE----
T ss_pred EEEEECccHHHHHHHccCCcEECCEEEEEEeCCcc
Confidence 99999999999999999999999999999998754
No 110
>KOG2314|consensus
Probab=93.71 E-value=0.083 Score=48.17 Aligned_cols=53 Identities=17% Similarity=0.270 Sum_probs=42.9
Q ss_pred HHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCe
Q psy3067 40 DIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHR 94 (141)
Q Consensus 40 DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~R 94 (141)
-|.+.|+.++.+ ....++.| ..|..+|+.|+++++..+|+.|++ .|+..|+..
T Consensus 80 vl~kvfsk~gk~-vn~~~P~~-e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldkn 133 (698)
T KOG2314|consen 80 VLTKVFSKAGKI-VNMYYPID-EEGGTKGYLFVEYASMRDAKKAVKSLNGKRLDKN 133 (698)
T ss_pred HHHHHHHhhccc-cceeeccC-ccCCeeeEEEEEecChhhHHHHHHhcccceeccc
Confidence 366778888644 34888888 677799999999999999999999 588776543
No 111
>KOG2202|consensus
Probab=93.28 E-value=0.051 Score=44.90 Aligned_cols=62 Identities=21% Similarity=0.306 Sum_probs=44.9
Q ss_pred HHHHhhcc-cCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEecc
Q psy3067 39 DDIAQFFD-GLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGHR 102 (141)
Q Consensus 39 ~DI~~FFs-~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~ss 102 (141)
+||-.+|+ .++-+. .+.+..+ ..-.-.|-+||.|.++|+|++|++ .|+..+.||+|-...+.
T Consensus 83 Ed~f~E~~~kygEie-e~~Vc~N-l~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~p 146 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIE-ELNVCDN-LGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSP 146 (260)
T ss_pred HHHHHHHHHHhhhhh-hhhhhcc-cchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecC
Confidence 45555555 454442 3545554 334677899999999999999998 69999999998666553
No 112
>KOG1457|consensus
Probab=93.24 E-value=0.14 Score=42.16 Aligned_cols=55 Identities=18% Similarity=0.178 Sum_probs=39.5
Q ss_pred HHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH
Q psy3067 26 WKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ 85 (141)
Q Consensus 26 ~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~ 85 (141)
.+|+.||.-+|||++++..|+.+.--. |.-+.. +.|.+ .|||+|+..+.|..||.
T Consensus 212 tlfianl~~~~~ed~l~~~~~~~~gf~--~l~~~~-~~g~~--vaf~~~~~~~~at~am~ 266 (284)
T KOG1457|consen 212 TLFIANLGPNCTEDELKQLLSRYPGFH--ILKIRA-RGGMP--VAFADFEEIEQATDAMN 266 (284)
T ss_pred hHhhhccCCCCCHHHHHHHHHhCCCce--EEEEec-CCCcc--eEeecHHHHHHHHHHHH
Confidence 467889999999999999999873211 222233 45544 58888888888888886
No 113
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=92.73 E-value=0.32 Score=34.06 Aligned_cols=47 Identities=26% Similarity=0.384 Sum_probs=36.9
Q ss_pred cCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHHH
Q psy3067 31 TGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQK 86 (141)
Q Consensus 31 gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~k 86 (141)
..|-.....||.+.|++||-+. |..+-| ..|||.+...+.|+.|+..
T Consensus 15 tFPkeWK~~DI~qlFspfG~I~--VsWi~d-------TSAfV~l~~r~~~~~v~~~ 61 (87)
T PF08675_consen 15 TFPKEWKTSDIYQLFSPFGQIY--VSWIND-------TSAFVALHNRDQAKVVMNT 61 (87)
T ss_dssp E--TT--HHHHHHHCCCCCCEE--EEEECT-------TEEEEEECCCHHHHHHHHH
T ss_pred eCchHhhhhhHHHHhccCCcEE--EEEEcC-------CcEEEEeecHHHHHHHHHH
Confidence 3577788899999999998765 888877 3699999999999998874
No 114
>KOG1548|consensus
Probab=92.44 E-value=0.46 Score=41.03 Aligned_cols=59 Identities=19% Similarity=0.241 Sum_probs=45.3
Q ss_pred HHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEecch
Q psy3067 40 DIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGHRY 103 (141)
Q Consensus 40 DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~ss~ 103 (141)
||++==+.||+|. .| +++| --|.|.+-|.|.+.++|..+++ +++..++||.|.-+...-
T Consensus 292 dl~eec~K~G~v~-~v-vv~d---~hPdGvvtV~f~n~eeA~~ciq~m~GR~fdgRql~A~i~DG 351 (382)
T KOG1548|consen 292 DLTEECEKFGQVR-KV-VVYD---RHPDGVVTVSFRNNEEADQCIQTMDGRWFDGRQLTASIWDG 351 (382)
T ss_pred HHHHHHHHhCCcc-eE-EEec---cCCCceeEEEeCChHHHHHHHHHhcCeeecceEEEEEEeCC
Confidence 3333344568875 33 4555 4578999999999999999999 699999999998877654
No 115
>KOG1190|consensus
Probab=91.96 E-value=0.39 Score=42.39 Aligned_cols=68 Identities=16% Similarity=0.113 Sum_probs=50.5
Q ss_pred hcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCe-eEEEEecc
Q psy3067 30 HTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHR-YIFFTGHR 102 (141)
Q Consensus 30 ~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~R-yIeV~~ss 102 (141)
.|+|-+++|+|+++-|..-+-. |..-+ .-++..-.|++++.|.|+|..||- +|.+.++.- -+.|..+.
T Consensus 420 snip~svsee~lk~~f~~~g~~---vkafk--ff~kd~kmal~q~~sveeA~~ali~~hnh~lgen~hlRvSFSk 489 (492)
T KOG1190|consen 420 SNIPPSVSEEDLKNLFQEPGGQ---VKAFK--FFQKDRKMALPQLESVEEAIQALIDLHNHYLGENHHLRVSFSK 489 (492)
T ss_pred ccCCcccchhHHHHhhhcCCce---EEeee--ecCCCcceeecccCChhHhhhhccccccccCCCCceEEEEeec
Confidence 4889999999999999987533 22211 223344479999999999999997 688888865 66666553
No 116
>KOG0115|consensus
Probab=91.86 E-value=0.17 Score=42.02 Aligned_cols=93 Identities=20% Similarity=0.149 Sum_probs=65.1
Q ss_pred HHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHHH--cCCcC---CCeeEEEEe
Q psy3067 26 WKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQK--HKERI---GHRYIFFTG 100 (141)
Q Consensus 26 ~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~k--~~~~i---~~RyIeV~~ 100 (141)
.+.+.||+--++-+.+.+=|+-++.++ ...++.| ..|+++|++.|+|+..-.+.+|+.+ ++-.. .+|..-|.+
T Consensus 33 ~l~V~nl~~~~sndll~~~f~~fg~~e-~av~~vD-~r~k~t~eg~v~~~~k~~a~~a~rr~~~~g~~~~~~~~p~~VeP 110 (275)
T KOG0115|consen 33 ELYVVNLMQGASNDLLEQAFRRFGPIE-RAVAKVD-DRGKPTREGIVEFAKKPNARKAARRCREGGFGGTTGGRPVGVEP 110 (275)
T ss_pred eEEEEecchhhhhHHHHHhhhhcCccc-hheeeec-ccccccccchhhhhcchhHHHHHHHhccCccccCCCCCccCCCh
Confidence 345678888899999999999998875 4555566 7899999999999999999999985 34433 355555544
Q ss_pred cchhhcccCCCCCCCCcccCCCCCCC
Q psy3067 101 HRYTVQHRAPRCETSIPVSSSTHKPG 126 (141)
Q Consensus 101 ss~~~~~~~~~~~~~lp~~~~~~~~~ 126 (141)
+.. +..+.|+|-++....+.
T Consensus 111 ~eq------~~d~~G~~~k~~~~~~~ 130 (275)
T KOG0115|consen 111 MEQ------PDDNDGGPEKGGGGGPS 130 (275)
T ss_pred hhc------cCCCCcchhhcCCCCCC
Confidence 432 34444555554444444
No 117
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=91.58 E-value=0.39 Score=41.66 Aligned_cols=66 Identities=15% Similarity=0.220 Sum_probs=47.3
Q ss_pred cCCCCCCHHHH------HhhcccCCcccccEEEeecCCC---CCcceee--EEEeCCHHHHHHHHHH-cCCcCCCeeEEE
Q psy3067 31 TGIVEGKKDDI------AQFFDGLEIISNGITLVEDPFN---GRPTGEA--YVQFVDKETAELALQK-HKERIGHRYIFF 98 (141)
Q Consensus 31 gLp~s~te~DI------~~FFs~~~iv~~~I~i~~d~~~---Gr~~G~a--fV~F~s~e~a~~AL~k-~~~~i~~RyIeV 98 (141)
|||-.+..+++ -+||..+|-+ +.|+.++.+ ....|.+ ||.|.+.|||..+++. |+.+++||.|.-
T Consensus 121 gi~pkva~Ee~~~vLk~~eyFGQyGkI---~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr~lka 197 (480)
T COG5175 121 GIPPKVADEEVAPVLKRHEYFGQYGKI---KKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGRVLKA 197 (480)
T ss_pred cCCCCCCcccccccccchhhhhhccce---eEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCceEee
Confidence 56666655552 3799999766 355555333 1223335 9999999999999985 999999998864
Q ss_pred E
Q psy3067 99 T 99 (141)
Q Consensus 99 ~ 99 (141)
.
T Consensus 198 t 198 (480)
T COG5175 198 T 198 (480)
T ss_pred e
Confidence 4
No 118
>KOG4285|consensus
Probab=86.99 E-value=1.4 Score=37.63 Aligned_cols=58 Identities=17% Similarity=0.156 Sum_probs=43.9
Q ss_pred HHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHHHcCCcCCCe-eEEEEecch
Q psy3067 39 DDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQKHKERIGHR-YIFFTGHRY 103 (141)
Q Consensus 39 ~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~k~~~~i~~R-yIeV~~ss~ 103 (141)
.=|.+-|+.|+-| |..+.- .+| -.-+|.+.+.-+|++||.+|+..|++- -|-|.+|.-
T Consensus 211 s~vL~~F~~cG~V---vkhv~~-~ng---NwMhirYssr~~A~KALskng~ii~g~vmiGVkpCtD 269 (350)
T KOG4285|consen 211 SIVLNLFSRCGEV---VKHVTP-SNG---NWMHIRYSSRTHAQKALSKNGTIIDGDVMIGVKPCTD 269 (350)
T ss_pred hHHHHHHHhhCee---eeeecC-CCC---ceEEEEecchhHHHHhhhhcCeeeccceEEeeeecCC
Confidence 4577788999644 222222 344 578999999999999999999999876 678999864
No 119
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=86.22 E-value=2.6 Score=27.76 Aligned_cols=57 Identities=16% Similarity=0.173 Sum_probs=33.0
Q ss_pred CCHHHHHhhcccC-Ccccc---cEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEec
Q psy3067 36 GKKDDIAQFFDGL-EIISN---GITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGH 101 (141)
Q Consensus 36 ~te~DI~~FFs~~-~iv~~---~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~s 101 (141)
.+..||..++... ++... .|.|..+ ++||+.... .++++++ .++..+.||.+.|.++
T Consensus 13 ~~~~~iv~~i~~~~gi~~~~IG~I~I~~~--------~S~vev~~~-~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 13 LTPRDIVGAICNEAGIPGRDIGRIDIFDN--------FSFVEVPEE-VAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp --HHHHHHHHHTCTTB-GGGEEEEEE-SS---------EEEEE-TT--HHHHHHHHTT--SSS----EEE-
T ss_pred CCHHHHHHHHHhccCCCHHhEEEEEEeee--------EEEEEECHH-HHHHHHHHhcCCCCCCeeEEEEEC
Confidence 5788999999876 66653 3444443 899999887 6677887 4889999999988764
No 120
>KOG4210|consensus
Probab=84.00 E-value=0.56 Score=39.12 Aligned_cols=75 Identities=9% Similarity=-0.133 Sum_probs=56.4
Q ss_pred HHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHHHcCC-cCCCeeEEEEec
Q psy3067 26 WKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQKHKE-RIGHRYIFFTGH 101 (141)
Q Consensus 26 ~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~k~~~-~i~~RyIeV~~s 101 (141)
..+.+.+.|++.+.++..|+...+... ...+........+.|+++|.|++.+.+..||..... .+..+-++....
T Consensus 90 ~~f~g~~s~~~e~~~~~~~~~~~g~~~-~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~ 165 (285)
T KOG4210|consen 90 TFFVGELSENIEESEDDNFSSEAGLRV-DARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLN 165 (285)
T ss_pred cccccccccchhhccccccchhhcCcc-cchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCccc
Confidence 346678888988888999998886442 244444336789999999999999999999998874 666666555444
No 121
>KOG0105|consensus
Probab=82.81 E-value=1.1 Score=36.08 Aligned_cols=72 Identities=19% Similarity=0.264 Sum_probs=50.0
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHHH-cCCcCCC----ee
Q psy3067 21 RQEMDWKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQK-HKERIGH----RY 95 (141)
Q Consensus 21 ~~d~~~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~k-~~~~i~~----Ry 95 (141)
.+|+ -++++|||-+.+.+||++--..-+-|= -..+-.| |.+-|+|...||.+-|+.+ +.+.... -|
T Consensus 113 rSe~-RVvVsGLp~SgSWQDLKDHmReaGdvC-fadv~rD-------g~GvV~~~r~eDMkYAvr~ld~~~~~seGe~~y 183 (241)
T KOG0105|consen 113 RSEY-RVVVSGLPPSGSWQDLKDHMREAGDVC-FADVQRD-------GVGVVEYLRKEDMKYAVRKLDDQKFRSEGETAY 183 (241)
T ss_pred ccce-eEEEecCCCCCchHHHHHHHHhhCCee-eeeeecc-------cceeeeeeehhhHHHHHHhhccccccCcCcEee
Confidence 3455 788899999999999999988765331 0112223 5889999999999999984 5444432 25
Q ss_pred EEEEec
Q psy3067 96 IFFTGH 101 (141)
Q Consensus 96 IeV~~s 101 (141)
|.|..-
T Consensus 184 irv~~~ 189 (241)
T KOG0105|consen 184 IRVRGD 189 (241)
T ss_pred EEeccc
Confidence 555544
No 122
>KOG1855|consensus
Probab=81.92 E-value=0.73 Score=40.87 Aligned_cols=75 Identities=19% Similarity=0.248 Sum_probs=54.3
Q ss_pred eeEEEEEecHHH-HH--HHHHhcCCCCCCHHHHHhhcccCCcccccEEEeec---CCC--CCcc--------eeeEEEeC
Q psy3067 12 RYIEVFKVRRQE-MD--WKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVED---PFN--GRPT--------GEAYVQFV 75 (141)
Q Consensus 12 RyIEv~~~~~~d-~~--~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d---~~~--Gr~~--------G~afV~F~ 75 (141)
|+|+.++....+ +. -|+.-+||-+-.-+.|.+.|+.++.++ .|+|+.- +.+ |.++ =.|+|+|.
T Consensus 216 rRisPlp~~~~eel~srtivaenLP~Dh~~enl~kiFg~~G~Ik-sIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye 294 (484)
T KOG1855|consen 216 RRISPLPEFDEEELPSRTIVAENLPLDHSYENLSKIFGTVGSIK-SIRICKPGAIPEDVRGFPKKYFELQTKECALVEYE 294 (484)
T ss_pred eecCCCCCccccccccceEEEecCCcchHHHHHHHHhhccccee-eeeecCCCCCCcccccCCccchhhhhhhhhhhhhh
Confidence 445555543333 42 245569999988899999999998885 7998775 333 3333 35899999
Q ss_pred CHHHHHHHHHHc
Q psy3067 76 DKETAELALQKH 87 (141)
Q Consensus 76 s~e~a~~AL~k~ 87 (141)
..+.|.+|-++.
T Consensus 295 ~~~~A~KA~e~~ 306 (484)
T KOG1855|consen 295 EVEAARKARELL 306 (484)
T ss_pred hhHHHHHHHHhh
Confidence 999999999865
No 123
>KOG1456|consensus
Probab=81.44 E-value=3.7 Score=36.22 Aligned_cols=60 Identities=13% Similarity=0.183 Sum_probs=47.0
Q ss_pred cCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHHH-cCCcCC
Q psy3067 31 TGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQK-HKERIG 92 (141)
Q Consensus 31 gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~k-~~~~i~ 92 (141)
|.|-..||+.+.+.|...++...+|.+.-- ++.|+. .+.++|++.++|.+||.+ |.-.|.
T Consensus 413 NaP~~vtEe~l~~i~nek~v~~~svkvFp~-kserSs-sGllEfe~~s~Aveal~~~NH~pi~ 473 (494)
T KOG1456|consen 413 NAPLGVTEEQLIGICNEKDVPPTSVKVFPL-KSERSS-SGLLEFENKSDAVEALMKLNHYPIE 473 (494)
T ss_pred cCCCccCHHHHHHHhhhcCCCcceEEeecc-cccccc-cceeeeehHHHHHHHHHHhcccccc
Confidence 678889999999999998777656776554 455554 689999999999999985 555554
No 124
>KOG4206|consensus
Probab=79.42 E-value=5.6 Score=32.35 Aligned_cols=51 Identities=22% Similarity=0.334 Sum_probs=40.5
Q ss_pred HhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH
Q psy3067 29 QHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ 85 (141)
Q Consensus 29 ~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~ 85 (141)
.-+||-.++.+-+...|..+.-- ..|+++-. ..|.|||+|.++..+..|++
T Consensus 151 ~~niP~es~~e~l~~lf~qf~g~-keir~i~~-----~~~iAfve~~~d~~a~~a~~ 201 (221)
T KOG4206|consen 151 LTNIPSESESEMLSDLFEQFPGF-KEIRLIPP-----RSGIAFVEFLSDRQASAAQQ 201 (221)
T ss_pred EecCCcchhHHHHHHHHhhCccc-ceeEeccC-----CCceeEEecchhhhhHHHhh
Confidence 35788899999999999998544 36888775 24699999999988777775
No 125
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=79.42 E-value=2.1 Score=31.20 Aligned_cols=50 Identities=14% Similarity=0.157 Sum_probs=33.9
Q ss_pred CHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCH-HHHHHHHHHcCCc
Q psy3067 37 KKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDK-ETAELALQKHKER 90 (141)
Q Consensus 37 te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~-e~a~~AL~k~~~~ 90 (141)
+.+.|++.|+.+...+ |+.+++ .. -.+|.+-|+|.+. .-...|++.+++.
T Consensus 30 ~~~~l~~~l~~f~p~k--v~~l~~-~~-gh~g~aiv~F~~~w~Gf~~A~~l~~~F 80 (116)
T PF03468_consen 30 SNEELLDKLAEFNPLK--VKPLYG-KQ-GHTGFAIVEFNKDWSGFKNAMRLEKHF 80 (116)
T ss_dssp -SHHHHHHHHH---SE--EEEEEE-TT-EEEEEEEEE--SSHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhcCCce--eEECcC-CC-CCcEEEEEEECCChHHHHHHHHHHHHH
Confidence 4578999999998876 888888 45 4889999999854 6667787765543
No 126
>KOG1996|consensus
Probab=76.36 E-value=2.7 Score=35.95 Aligned_cols=57 Identities=18% Similarity=0.271 Sum_probs=39.8
Q ss_pred HHHHHhhcccCCcccccEEEeecCCCCCcce---eeEEEeCCHHHHHHHHH-HcCCcCCCeeEE
Q psy3067 38 KDDIAQFFDGLEIISNGITLVEDPFNGRPTG---EAYVQFVDKETAELALQ-KHKERIGHRYIF 97 (141)
Q Consensus 38 e~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G---~afV~F~s~e~a~~AL~-k~~~~i~~RyIe 97 (141)
++++.+=-..|+-|. .|.|..+ -+.+-- -.||+|...+.|.+|+- +|+.++|||.+.
T Consensus 300 ede~keEceKyg~V~-~viifei--p~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~ 360 (378)
T KOG1996|consen 300 EDETKEECEKYGKVG-NVIIFEI--PSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVS 360 (378)
T ss_pred HHHHHHHHHhhccee-eEEEEec--CCCccchhheeeeeeccHHHHHHHHHhcCCceecceeee
Confidence 455666666676553 3555444 233322 26999999999999997 699999999865
No 127
>KOG4676|consensus
Probab=71.88 E-value=4.5 Score=35.77 Aligned_cols=73 Identities=16% Similarity=0.199 Sum_probs=54.1
Q ss_pred HhcCCCCCCHHHHHhhcccCCcccccEEEeecCCC---CCcceeeEEEeCCHHHHHHHHHHcCCcCCCeeEEEEecc
Q psy3067 29 QHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFN---GRPTGEAYVQFVDKETAELALQKHKERIGHRYIFFTGHR 102 (141)
Q Consensus 29 ~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~---Gr~~G~afV~F~s~e~a~~AL~k~~~~i~~RyIeV~~ss 102 (141)
+-||..++|.+.+...|..||-++ .+.|.-+..+ --..-.|||.|.+...+.-|.-+-...+=+|-+-|.+.-
T Consensus 12 vanispsat~dqm~tlFg~lGkI~-elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQhLtntvfvdraliv~p~~ 87 (479)
T KOG4676|consen 12 VANISPSATKDQMQTLFGNLGKIP-ELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQHLTNTVFVDRALIVRPYG 87 (479)
T ss_pred ecccCchhhHHHHHHHHhhccccc-cccccCCCCCccCcceeeeEEEeccCCcceeHHhhhccceeeeeeEEEEecC
Confidence 358899999999999999997663 4665332111 133457999999999999888776666667877777764
No 128
>KOG2193|consensus
Probab=71.53 E-value=3.7 Score=36.73 Aligned_cols=73 Identities=18% Similarity=0.137 Sum_probs=56.9
Q ss_pred HHHHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHHH-c-CCcCCCeeEEEEecc
Q psy3067 25 DWKLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQK-H-KERIGHRYIFFTGHR 102 (141)
Q Consensus 25 ~~~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~k-~-~~~i~~RyIeV~~ss 102 (141)
+++..++|.-+++..|+...|.+-.+.-++=.|+.. |+|||...++.-|.+|++. + +..+.|..+||.-+-
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~k~-------gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv 74 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLVKS-------GYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSV 74 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceeeec-------ceeeccCCchhhhhhhHHhhchhhhhcCceeeccchh
Confidence 345668999999999999999987555334444443 8999999999999999985 4 457889999988765
Q ss_pred hh
Q psy3067 103 YT 104 (141)
Q Consensus 103 ~~ 104 (141)
.+
T Consensus 75 ~k 76 (584)
T KOG2193|consen 75 PK 76 (584)
T ss_pred hH
Confidence 43
No 129
>KOG2591|consensus
Probab=71.20 E-value=5 Score=36.95 Aligned_cols=58 Identities=16% Similarity=0.238 Sum_probs=44.5
Q ss_pred hcCCCCCCHHHHHhhccc--C-CcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHHH--c-CCcCCCeeE
Q psy3067 30 HTGIVEGKKDDIAQFFDG--L-EIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQK--H-KERIGHRYI 96 (141)
Q Consensus 30 ~gLp~s~te~DI~~FFs~--~-~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~k--~-~~~i~~RyI 96 (141)
|-+|=++-.++|+..|++ | .+++ +.+..+ + -=||.|++++||++|.+. + .+.+.|+.|
T Consensus 181 REIpettp~e~Vk~lf~~encPk~is--cefa~N--~-----nWyITfesd~DAQqAykylreevk~fqgKpI 244 (684)
T KOG2591|consen 181 REIPETTPIEVVKALFKGENCPKVIS--CEFAHN--D-----NWYITFESDTDAQQAYKYLREEVKTFQGKPI 244 (684)
T ss_pred eecCCCChHHHHHHHhccCCCCCcee--eeeeec--C-----ceEEEeecchhHHHHHHHHHHHHHhhcCcch
Confidence 578999999999999997 4 4543 777665 2 379999999999999872 2 356666665
No 130
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=68.58 E-value=25 Score=25.30 Aligned_cols=59 Identities=17% Similarity=0.104 Sum_probs=42.3
Q ss_pred cCCCCCCHHHHHhhcccC-CcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCC
Q psy3067 31 TGIVEGKKDDIAQFFDGL-EIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIG 92 (141)
Q Consensus 31 gLp~s~te~DI~~FFs~~-~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~ 92 (141)
..||..+.+++..|.+.+ ..+ .-++|+.| .+. .+=-+.+.|.++++|.+=-+ .|++...
T Consensus 20 vp~~~~~~d~l~~f~~~~~~~i-~~~riird-~~p-nrymVLikF~~~~~Ad~Fy~~fNGk~Fn 80 (110)
T PF07576_consen 20 VPPYMTPSDFLLFFGAPFREDI-EHIRIIRD-GTP-NRYMVLIKFRDQESADEFYEEFNGKPFN 80 (110)
T ss_pred eCcccccHHHHHHhhhcccccE-EEEEEeeC-CCC-ceEEEEEEECCHHHHHHHHHHhCCCccC
Confidence 467888888888887777 444 35888888 332 23358899999999887776 4776654
No 131
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=66.34 E-value=8.8 Score=25.26 Aligned_cols=14 Identities=43% Similarity=0.657 Sum_probs=11.9
Q ss_pred HHHHhhcccCCccc
Q psy3067 39 DDIAQFFDGLEIIS 52 (141)
Q Consensus 39 ~DI~~FFs~~~iv~ 52 (141)
++||+|||.+|-+.
T Consensus 9 ~~iR~~fs~lG~I~ 22 (62)
T PF15513_consen 9 AEIRQFFSQLGEIA 22 (62)
T ss_pred HHHHHHHHhcCcEE
Confidence 68999999997653
No 132
>KOG1456|consensus
Probab=65.25 E-value=37 Score=30.13 Aligned_cols=69 Identities=12% Similarity=-0.010 Sum_probs=52.3
Q ss_pred hcCCCC-CCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCCCeeEEEEecchh
Q psy3067 30 HTGIVE-GKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIGHRYIFFTGHRYT 104 (141)
Q Consensus 30 ~gLp~s-~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~~RyIeV~~ss~~ 104 (141)
-||.-. .+-+-+-+.|=-++-|. .|.+++. . .|.|-|++.++.++++|+. ++...|=|..|+|-.|...
T Consensus 293 yGLdh~k~N~drlFNl~ClYGNV~-rvkFmkT-k----~gtamVemgd~~aver~v~hLnn~~lfG~kl~v~~SkQ~ 363 (494)
T KOG1456|consen 293 YGLDHGKMNCDRLFNLFCLYGNVE-RVKFMKT-K----PGTAMVEMGDAYAVERAVTHLNNIPLFGGKLNVCVSKQN 363 (494)
T ss_pred EeccccccchhhhhhhhhhcCcee-eEEEeec-c----cceeEEEcCcHHHHHHHHHHhccCccccceEEEeecccc
Confidence 345443 35566788887786553 5888887 3 4689999999999999999 5888888888898887653
No 133
>KOG3152|consensus
Probab=62.71 E-value=2.4 Score=35.34 Aligned_cols=68 Identities=13% Similarity=0.123 Sum_probs=51.2
Q ss_pred HHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCC--------C----CcceeeEEEeCCHHHHHHHH-HHcCCcCCCe
Q psy3067 28 LQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFN--------G----RPTGEAYVQFVDKETAELAL-QKHKERIGHR 94 (141)
Q Consensus 28 ~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~--------G----r~~G~afV~F~s~e~a~~AL-~k~~~~i~~R 94 (141)
+.+++|..-...-+++.|+.+|.| +.|.+--...+ | ..--+|+|+|.+...|++-- ..|+..|||+
T Consensus 78 ylS~IPp~m~~~rlReil~~yGeV-GRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~Iggk 156 (278)
T KOG3152|consen 78 YLSNIPPYMDPVRLREILSQYGEV-GRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTPIGGK 156 (278)
T ss_pred EeccCCCccCHHHHHHHHHhcccc-ceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCccCCC
Confidence 446899999999999999999988 46776433133 2 22237899999999886644 4799999998
Q ss_pred eE
Q psy3067 95 YI 96 (141)
Q Consensus 95 yI 96 (141)
.=
T Consensus 157 k~ 158 (278)
T KOG3152|consen 157 KK 158 (278)
T ss_pred CC
Confidence 53
No 134
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=59.13 E-value=4.6 Score=29.19 Aligned_cols=65 Identities=9% Similarity=0.114 Sum_probs=45.4
Q ss_pred CCHHHHHhhcccC-CcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHHHcCCcCCCeeEEEEecchhhc
Q psy3067 36 GKKDDIAQFFDGL-EIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQKHKERIGHRYIFFTGHRYTVQ 106 (141)
Q Consensus 36 ~te~DI~~FFs~~-~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~k~~~~i~~RyIeV~~ss~~~~ 106 (141)
.+-..|.+.+... +.. .++.+..= ..|..-++|.++++++++++...-.+++.++-+.+.++...
T Consensus 29 ~~~~~l~~~l~~~W~~~-~~~~i~~l-----~~~~fl~~F~~~~d~~~vl~~~p~~~~~~~~~l~~W~~~~~ 94 (153)
T PF14111_consen 29 ISLSALEQELAKIWKLK-GGVKIRDL-----GDNLFLFQFESEEDRQRVLKGGPWNFNGHFLILQRWSPDFN 94 (153)
T ss_pred CCHHHHHHHHHHHhCCC-CcEEEEEe-----CCCeEEEEEEeccceeEEEecccccccccchhhhhhccccc
Confidence 4455566666553 333 23444332 12689999999999999999888889999998888875443
No 135
>PLN00039 photosystem II reaction center Psb28 protein; Provisional
Probab=57.55 E-value=11 Score=27.59 Aligned_cols=38 Identities=21% Similarity=0.372 Sum_probs=30.5
Q ss_pred HhhcccC--CcccccEEEeecCCCCCcceeeEEEeCCHHHHHH
Q psy3067 42 AQFFDGL--EIISNGITLVEDPFNGRPTGEAYVQFVDKETAEL 82 (141)
Q Consensus 42 ~~FFs~~--~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~ 82 (141)
.+||.++ .+++ +|+|... .+| .+|.|...|..+....+
T Consensus 3 IQF~~Gi~E~~vp-~VrLtRs-rdg-~~g~a~f~F~~p~~l~~ 42 (111)
T PLN00039 3 IQFIKGTDETTVP-DVRLTRS-RDG-TNGTAIFVFDQPSVFDS 42 (111)
T ss_pred EEEecCCCCCcCC-ceEEEEc-cCC-CccEEEEEECCchhhcc
Confidence 4789998 3454 6999999 677 88999999999976554
No 136
>CHL00128 psbW photosystem II protein W; Reviewed
Probab=57.23 E-value=15 Score=26.93 Aligned_cols=39 Identities=28% Similarity=0.544 Sum_probs=30.2
Q ss_pred HhhcccC--CcccccEEEeecCCCCCcceeeEEEeCCHHHHHHH
Q psy3067 42 AQFFDGL--EIISNGITLVEDPFNGRPTGEAYVQFVDKETAELA 83 (141)
Q Consensus 42 ~~FFs~~--~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~A 83 (141)
.+||.++ .+++ +|+|... .+| .+|.|...|.++....+.
T Consensus 4 IQF~~Gi~E~~ip-~VrLtRs-rdg-~~g~a~f~F~~p~al~~~ 44 (113)
T CHL00128 4 IQFIKGIDEEVIP-DVRLTRS-RDG-STGTATFRFKNPNILDKS 44 (113)
T ss_pred EEEecCCCCCcCC-ceEEEEc-cCC-CceEEEEEECCchhhhhc
Confidence 4799998 3454 6999998 566 678999999999775553
No 137
>TIGR03047 PS_II_psb28 photosystem II reaction center protein Psb28. Members of this protein family are the Psb28 protein of photosystem II. Two different protein families, apparently without homology between them, have been designated PsbW. Cyanobacterial proteins previously designated PsbW are members of the family described here. However, while members of the plant PsbW family are not found (so far) in Cyanobacteria, members of the present family do occur in plants. We therefore support the alternative designation that has emerged for this protein family, Psp28, rather than PsbW.
Probab=54.62 E-value=21 Score=26.04 Aligned_cols=37 Identities=32% Similarity=0.628 Sum_probs=28.8
Q ss_pred hhcccC--CcccccEEEeecCCCCCcceeeEEEeCCHHHHHH
Q psy3067 43 QFFDGL--EIISNGITLVEDPFNGRPTGEAYVQFVDKETAEL 82 (141)
Q Consensus 43 ~FFs~~--~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~ 82 (141)
+||.++ .+++ +|+|... .+| .+|.|...|..+....+
T Consensus 2 QF~~Gi~E~~ip-~VrLtRs-rdg-~~g~a~f~F~~p~al~~ 40 (109)
T TIGR03047 2 QFFRGIDEEVIP-DVRLTRS-RDG-GTGTALFRFENPKALDK 40 (109)
T ss_pred ccccCCCCCcCC-ceEEEEc-cCC-CceEEEEEECCchhhhh
Confidence 689998 3454 6999998 566 67899999999966544
No 138
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=51.78 E-value=5.8 Score=30.70 Aligned_cols=67 Identities=9% Similarity=-0.092 Sum_probs=36.5
Q ss_pred HHHHHHHhcCCCCCCHHHHHhhccc-CCcc-c-ccEEEeecCCC-C-CcceeeEEEeCCHHHHHHHHHH-cCC
Q psy3067 23 EMDWKLQHTGIVEGKKDDIAQFFDG-LEII-S-NGITLVEDPFN-G-RPTGEAYVQFVDKETAELALQK-HKE 89 (141)
Q Consensus 23 d~~~~~~~gLp~s~te~DI~~FFs~-~~iv-~-~~I~i~~d~~~-G-r~~G~afV~F~s~e~a~~AL~k-~~~ 89 (141)
+..++++|.||.+.||++..+-.++ ++-- . ..++-...... . -...-|||.|.+.+++..-... +++
T Consensus 6 ~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~ 78 (176)
T PF03467_consen 6 EGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGH 78 (176)
T ss_dssp ---EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTE
T ss_pred cCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCc
Confidence 3446788999999999998875554 2211 0 11221122111 1 1234599999999998777764 553
No 139
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=51.36 E-value=21 Score=29.23 Aligned_cols=31 Identities=23% Similarity=0.236 Sum_probs=21.0
Q ss_pred eEEEeCCHHHHHHHHHHcCCcCCCeeEEEEec
Q psy3067 70 AYVQFVDKETAELALQKHKERIGHRYIFFTGH 101 (141)
Q Consensus 70 afV~F~s~e~a~~AL~k~~~~i~~RyIeV~~s 101 (141)
|||.|+++.+|+.|++.-...-. +.+.+.++
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~~-~~~~v~~A 31 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKRP-NSWRVSPA 31 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCCC-CCceEeeC
Confidence 79999999999999984222222 23355554
No 140
>PF09702 Cas_Csa5: CRISPR-associated protein (Cas_Csa5); InterPro: IPR010157 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a minor family of Cas protein found in various species of Sulfolobus and Pyrococcus (all archaeal). It is found with two different CRISPR loci in Sulfolobus solfataricus.
Probab=50.84 E-value=4.3 Score=29.38 Aligned_cols=36 Identities=22% Similarity=0.417 Sum_probs=26.9
Q ss_pred CCceeEEEEEecHHHHHHHHHhcCCCCCCHHHHHhhcccC
Q psy3067 9 VSDRYIEVFKVRRQEMDWKLQHTGIVEGKKDDIAQFFDGL 48 (141)
Q Consensus 9 ig~RyIEv~~~~~~d~~~~~~~gLp~s~te~DI~~FFs~~ 48 (141)
=|++||+| ..++.|..+++.++|| |.+||.+|.+..
T Consensus 50 ~~~~y~~v-~~~ekeg~~i~~g~lP---t~~eVe~Fl~~v 85 (105)
T PF09702_consen 50 EGRRYIAV-IVKEKEGNYIIVGYLP---TDEEVEDFLDDV 85 (105)
T ss_pred cCccccce-eeccCCCCEEecCCCC---ChHHHHHHHHHH
Confidence 47899995 4455666788888888 668999998753
No 141
>cd06398 PB1_Joka2 The PB1 domain is present in the Nicotiana plumbaginifolia Joka2 protein which interacts with sulfur stress inducible UP9 protein. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module
Probab=49.82 E-value=85 Score=21.75 Aligned_cols=61 Identities=15% Similarity=0.139 Sum_probs=40.7
Q ss_pred CCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHHHcCCcCCCeeEEEEe
Q psy3067 33 IVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQKHKERIGHRYIFFTG 100 (141)
Q Consensus 33 p~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~k~~~~i~~RyIeV~~ 100 (141)
.|..=.+.|++.|+-..- .++.|-|--..| -+|.+.+.+|.+.|++.....-+...+.|+.
T Consensus 26 ~~~~L~~kI~~~f~l~~~--~~~~l~Y~Dedg-----d~V~l~~D~DL~~a~~~~~~~~~~~~lrl~v 86 (91)
T cd06398 26 NMDGLREKVEELFSLSPD--ADLSLTYTDEDG-----DVVTLVDDNDLTDAIQYFCSGSRLNPLRIDV 86 (91)
T ss_pred CHHHHHHHHHHHhCCCCC--CcEEEEEECCCC-----CEEEEccHHHHHHHHHHHhccCCCceEEEEE
Confidence 333345667777753221 347775542333 7999999999999999876666666666654
No 142
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=49.42 E-value=53 Score=25.44 Aligned_cols=63 Identities=21% Similarity=0.173 Sum_probs=43.1
Q ss_pred hcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHHHcCCcCCCeeEEEEecch
Q psy3067 30 HTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQKHKERIGHRYIFFTGHRY 103 (141)
Q Consensus 30 ~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~k~~~~i~~RyIeV~~ss~ 103 (141)
+|+.-+-+-+.|...++-+|.+. +|.+ -||.+ |-|.|.+..+|-+|+.--....-|+- +.|++
T Consensus 96 knm~~~edl~sV~~~Ls~fGpI~-SVT~-----cGrqs--avVvF~d~~SAC~Av~Af~s~~pgtm---~qCsW 158 (166)
T PF15023_consen 96 KNMQPTEDLKSVIQRLSVFGPIQ-SVTL-----CGRQS--AVVVFKDITSACKAVSAFQSRAPGTM---FQCSW 158 (166)
T ss_pred hcCChHHHHHHHHHHHHhcCCcc-eeee-----cCCce--EEEEehhhHHHHHHHHhhcCCCCCce---EEeec
Confidence 34444445566888899998884 6774 35444 99999999999999985333443433 55666
No 143
>KOG2135|consensus
Probab=48.53 E-value=9.3 Score=34.49 Aligned_cols=60 Identities=22% Similarity=0.236 Sum_probs=50.0
Q ss_pred CHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHHHcCCcCCCeeEEEEecch
Q psy3067 37 KKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQKHKERIGHRYIFFTGHRY 103 (141)
Q Consensus 37 te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~k~~~~i~~RyIeV~~ss~ 103 (141)
|-+|+..-|..+|-+. .|.+-+. .=-|-|.|.+..+|-+|-.-+...|++|.|.|+-.+.
T Consensus 386 t~a~ln~hfA~fG~i~-n~qv~~~------~~~a~vTF~t~aeag~a~~s~~avlnnr~iKl~whnp 445 (526)
T KOG2135|consen 386 TIADLNPHFAQFGEIE-NIQVDYS------SLHAVVTFKTRAEAGEAYASHGAVLNNRFIKLFWHNP 445 (526)
T ss_pred hHhhhhhhhhhcCccc-cccccCc------hhhheeeeeccccccchhccccceecCceeEEEEecC
Confidence 7789999999997663 5776554 2369999999999999999999999999999996654
No 144
>PRK13610 photosystem II reaction center protein Psb28; Provisional
Probab=47.99 E-value=19 Score=26.44 Aligned_cols=43 Identities=26% Similarity=0.403 Sum_probs=32.6
Q ss_pred CHHHHHhhcccC--CcccccEEEeecCCCCCcceeeEEEeCCHHHHHH
Q psy3067 37 KKDDIAQFFDGL--EIISNGITLVEDPFNGRPTGEAYVQFVDKETAEL 82 (141)
Q Consensus 37 te~DI~~FFs~~--~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~ 82 (141)
++.--.+||.++ .+++ +|+|... .+| .+|.|.-.|.++....+
T Consensus 5 ~~~a~IQF~~Gi~E~~vp-~VrLtRs-rdG-~tG~A~f~F~~p~~l~~ 49 (113)
T PRK13610 5 NENVAIQFVKGENEKDQP-EIRLFRN-LDG-KKGKAVYKFYKPKTITL 49 (113)
T ss_pred CCCcEEEEecCCCCCcCC-ceEEEEc-cCC-CccEEEEEECCchhccc
Confidence 344456899999 3454 7999998 666 67899999999976555
No 145
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=47.83 E-value=78 Score=20.77 Aligned_cols=47 Identities=17% Similarity=0.191 Sum_probs=35.3
Q ss_pred CCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHHH-cCCcCC
Q psy3067 36 GKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQK-HKERIG 92 (141)
Q Consensus 36 ~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~k-~~~~i~ 92 (141)
++-+||+.-+..++-. .|..| .+| -||.|.+-++|++-... |+..+-
T Consensus 12 ~~v~d~K~~Lr~y~~~----~I~~d-~tG-----fYIvF~~~~Ea~rC~~~~~~~~~f 59 (66)
T PF11767_consen 12 VTVEDFKKRLRKYRWD----RIRDD-RTG-----FYIVFNDSKEAERCFRAEDGTLFF 59 (66)
T ss_pred ccHHHHHHHHhcCCcc----eEEec-CCE-----EEEEECChHHHHHHHHhcCCCEEE
Confidence 5678899988888763 34456 555 79999999999999874 655443
No 146
>PRK13611 photosystem II reaction center protein Psb28; Provisional
Probab=43.05 E-value=22 Score=25.67 Aligned_cols=35 Identities=26% Similarity=0.499 Sum_probs=28.1
Q ss_pred HhhcccC-CcccccEEEeecCCCCCcceeeEEEeCCHHH
Q psy3067 42 AQFFDGL-EIISNGITLVEDPFNGRPTGEAYVQFVDKET 79 (141)
Q Consensus 42 ~~FFs~~-~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~ 79 (141)
.+||.++ +.++ +|+|... .+| .+|.|...|..+..
T Consensus 4 IQF~~Gi~E~~p-~VrLtRs-rdg-~~g~a~f~F~~~~~ 39 (104)
T PRK13611 4 IEFSPGIPEVPT-QVRLLKS-KTG-KRGSAIFRFEDLKS 39 (104)
T ss_pred EEEecCCCCCCC-ceEEEEc-cCC-CccEEEEEEcCCcc
Confidence 4789988 4443 6999999 777 88999999999754
No 147
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=41.19 E-value=65 Score=25.21 Aligned_cols=60 Identities=13% Similarity=0.099 Sum_probs=38.8
Q ss_pred CHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHHH-c--CCcCCCeeEEEEecch
Q psy3067 37 KKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQK-H--KERIGHRYIFFTGHRY 103 (141)
Q Consensus 37 te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~k-~--~~~i~~RyIeV~~ss~ 103 (141)
..+.|+++|..++.+. ....+. +-+=.-|.|.+.++|.+|... | +..+.+..+.|+.+..
T Consensus 8 ~~~~l~~l~~~~~~~~-~~~~L~------sFrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~ 70 (184)
T PF04847_consen 8 NLAELEELFSTYDPPV-QFSPLK------SFRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQP 70 (184)
T ss_dssp -HHHHHHHHHTT-SS--EEEEET------TTTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----
T ss_pred hHHHHHHHHHhcCCce-EEEEcC------CCCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEccc
Confidence 4578999999986441 233333 233588999999999999984 7 7788888899987743
No 148
>PRK13612 photosystem II reaction center protein Psb28; Provisional
Probab=41.13 E-value=21 Score=26.20 Aligned_cols=38 Identities=26% Similarity=0.420 Sum_probs=29.5
Q ss_pred HhhcccC--CcccccEEEeecCCCCCcceeeEEEeCCHHHHHH
Q psy3067 42 AQFFDGL--EIISNGITLVEDPFNGRPTGEAYVQFVDKETAEL 82 (141)
Q Consensus 42 ~~FFs~~--~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~ 82 (141)
.+||.++ .+++ +|+|... .+| .+|.|...|..+....+
T Consensus 6 IQF~~Gi~E~~ip-~VrLtRs-rdg-~~g~a~f~F~~p~al~~ 45 (113)
T PRK13612 6 IQFSRGVDEPVVP-DIRLTRS-RDG-RTGQATFYFEQPQALAP 45 (113)
T ss_pred EEEecCCCCCcCC-ceEEEEc-cCC-CeeEEEEEECCccccCc
Confidence 4799998 3354 6999998 566 67899999999976544
No 149
>PF08671 SinI: Anti-repressor SinI; InterPro: IPR010981 The SinR repressor is part of a group of Sin (sporulation inhibition) proteins in Bacillus subtilis that regulate the commitment to sporulation in response to extreme adversity []. SinR is a tetrameric repressor protein that binds to the promoters of genes essential for entry into sporulation and prevents their transcription. This repression is overcome through the activity of SinI, which disrupts the SinR tetramer through the formation of a SinI-SinR heterodimer, thereby allowing sporulation to proceed. The SinR structure consists of two domains: a dimerisation domain stabilised by a hydrophobic core, and a DNA-binding domain that is identical to domains of the bacteriophage 434 CI and Cro proteins that regulate prophage induction. The dimerisation domain is a four-helical bundle formed from two helices from the C-terminal residues of SinR and two helices from the central residues of SinI. These regions in SinR and SinI are similar in both structure and sequence. The interaction of SinR monomers to form tetramers is weaker than between SinR and SinI, since SinI can effectively disrupt SinR tetramers. This entry represents the dimerisation domain in both SinI and SinR proteins.; GO: 0005488 binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1B0N_A 2YAL_A.
Probab=40.67 E-value=15 Score=20.73 Aligned_cols=25 Identities=16% Similarity=0.213 Sum_probs=14.9
Q ss_pred HHHHHHHHhcCCCCCCHHHHHhhcc
Q psy3067 22 QEMDWKLQHTGIVEGKKDDIAQFFD 46 (141)
Q Consensus 22 ~d~~~~~~~gLp~s~te~DI~~FFs 46 (141)
+||..++.-..--..|.+||++|+.
T Consensus 3 ~EW~~Li~eA~~~Gls~eeir~FL~ 27 (30)
T PF08671_consen 3 EEWVELIKEAKESGLSKEEIREFLE 27 (30)
T ss_dssp HHHHHHHHHHHHTT--HHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 4555555544444568899999985
No 150
>KOG3424|consensus
Probab=40.26 E-value=36 Score=25.39 Aligned_cols=46 Identities=20% Similarity=0.205 Sum_probs=31.0
Q ss_pred CCCHHHHHhhcccC-CcccccEEEeecCC----CCCcceeeEEEeCCHHHHHH
Q psy3067 35 EGKKDDIAQFFDGL-EIISNGITLVEDPF----NGRPTGEAYVQFVDKETAEL 82 (141)
Q Consensus 35 s~te~DI~~FFs~~-~iv~~~I~i~~d~~----~Gr~~G~afV~F~s~e~a~~ 82 (141)
+++.+||++=.+.+ ...+ ++.++++-. .|+++|+|.| +.|.|.|.+
T Consensus 34 ~vsK~EirEKla~mYkt~~-d~V~vfgfrt~~GggkstgfalI-Ydsve~akk 84 (132)
T KOG3424|consen 34 NVSKTEIREKLAKMYKTTP-DAVFVFGFRTHFGGGKSTGFALI-YDSVEYAKK 84 (132)
T ss_pred CCCHHHHHHHHHHHhcCCc-ceEEEEEeeeccCCcccceeeee-eehHHHHHh
Confidence 67889999988876 4443 455555412 3799999987 566655543
No 151
>PF11215 DUF3010: Protein of unknown function (DUF3010); InterPro: IPR021378 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=38.94 E-value=76 Score=24.01 Aligned_cols=40 Identities=18% Similarity=0.337 Sum_probs=26.1
Q ss_pred CCCCCCHHHHHhhc-------ccCCcccccEEEeecCCCCCcceeeEEEe
Q psy3067 32 GIVEGKKDDIAQFF-------DGLEIISNGITLVEDPFNGRPTGEAYVQF 74 (141)
Q Consensus 32 Lp~s~te~DI~~FF-------s~~~iv~~~I~i~~d~~~Gr~~G~afV~F 74 (141)
|+-+.+.++|++|- .+++|- .|.|......|++.|-| |.|
T Consensus 37 l~~~~~~~~vr~Fq~~f~kl~~dy~Vd--~VvIk~R~~KGKfAGga-~~F 83 (138)
T PF11215_consen 37 LSDDNSTEEVRKFQFTFAKLMEDYKVD--KVVIKERATKGKFAGGA-VGF 83 (138)
T ss_pred cCCCccHHHHHHHHHHHHHHHHHcCCC--EEEEEecccCCCccCCc-hhH
Confidence 45555667777664 456664 47777766889999843 444
No 152
>KOG0112|consensus
Probab=36.31 E-value=9.5 Score=36.84 Aligned_cols=64 Identities=13% Similarity=0.104 Sum_probs=49.5
Q ss_pred HHHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCC
Q psy3067 27 KLQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIG 92 (141)
Q Consensus 27 ~~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~ 92 (141)
++.++|+-..++.+|+.-|..++.++ .|.|-.- .-++-.-+|||.|.+-..+-+|.. .....|+
T Consensus 375 Lf~Gnl~~kl~eseiR~af~e~gkve-~VDiKtP-~~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~ 439 (975)
T KOG0112|consen 375 LFLGNLDSKLTESEIRPAFDESGKVE-EVDIKTP-HIKTESAYAFVSLLNTDMTPSAKFEESGPLIG 439 (975)
T ss_pred hhhcCcccchhhhhhhhhhhhhcccc-ccccccC-CCCcccchhhhhhhccccCcccchhhcCCccc
Confidence 57789999999999999999998884 6776554 456666789999998877777764 4555544
No 153
>KOG2068|consensus
Probab=35.81 E-value=34 Score=29.39 Aligned_cols=71 Identities=14% Similarity=0.183 Sum_probs=46.5
Q ss_pred HHhcCCCCCCHHHHH---hhcccCCcccccEEEeecC----CCCCcceeeEEEeCCHHHHHHHHHH-cCCcCCCeeEEEE
Q psy3067 28 LQHTGIVEGKKDDIA---QFFDGLEIISNGITLVEDP----FNGRPTGEAYVQFVDKETAELALQK-HKERIGHRYIFFT 99 (141)
Q Consensus 28 ~~~gLp~s~te~DI~---~FFs~~~iv~~~I~i~~d~----~~Gr~~G~afV~F~s~e~a~~AL~k-~~~~i~~RyIeV~ 99 (141)
.+-|||.....+++. ++|..|+.+. .|.+-.++ ..|-.. -+||.|...|+|..|+.- |+-.+++|-++..
T Consensus 81 yvvgl~~~~ade~~l~~~eyfgqygki~-ki~~~~~~S~~s~~~~~~-s~yITy~~~eda~rci~~v~g~~~dg~~lka~ 158 (327)
T KOG2068|consen 81 YVVGLPLDLADESVLERTEYFGQYGKIN-KIVKNKDPSSSSSSGGTC-SVYITYEEEEDADRCIDDVDGFVDDGRALKAS 158 (327)
T ss_pred hhhCCCccccchhhhhCcccccccccce-EEeecCCcccccCCCCCC-cccccccchHhhhhHHHHhhhHHhhhhhhHHh
Confidence 334777776555554 5788776552 46655542 112222 389999999999999984 8888888875444
Q ss_pred e
Q psy3067 100 G 100 (141)
Q Consensus 100 ~ 100 (141)
.
T Consensus 159 ~ 159 (327)
T KOG2068|consen 159 L 159 (327)
T ss_pred h
Confidence 3
No 154
>PF03912 Psb28: Psb28 protein; InterPro: IPR005610 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein Psb28 (PsbW) found in PSII, where it is a subunit of the oxygen-evolving complex. Psb28 appears to have several roles, including guiding PSII biogenesis and assembly, stabilising dimeric PSII [], and facilitating PSII repair after photo-inhibition []. There appears to be two classes of Psb28, class 1 being found predominantly in algae and cyanobacteria, and class 2 being found predominantly in plants. This entry represents class 1 Psb28.; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009654 oxygen evolving complex, 0016020 membrane; PDB: 2KVO_A.
Probab=33.21 E-value=41 Score=24.47 Aligned_cols=36 Identities=31% Similarity=0.570 Sum_probs=22.5
Q ss_pred hhcccC--CcccccEEEeecCCCCCcceeeEEEeCCHHHHH
Q psy3067 43 QFFDGL--EIISNGITLVEDPFNGRPTGEAYVQFVDKETAE 81 (141)
Q Consensus 43 ~FFs~~--~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~ 81 (141)
+||.++ .+++ +|+|... .+| .+|.|...|.++....
T Consensus 2 QF~~Gi~E~~~p-dVrLtRs-rdg-~~g~a~f~F~~p~al~ 39 (108)
T PF03912_consen 2 QFIKGIDEEVVP-DVRLTRS-RDG-GTGTATFYFENPKALE 39 (108)
T ss_dssp ESSSS--------EEEEEE--TTS--SEEEEEEEES-GGGT
T ss_pred ccccCCCCccCC-CeEEEEc-cCC-CceEEEEEECCCcccc
Confidence 688888 4554 6999998 565 6789999999996543
No 155
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=32.84 E-value=63 Score=22.47 Aligned_cols=33 Identities=18% Similarity=0.219 Sum_probs=26.1
Q ss_pred eEEEeCCHHHHHHHHHH--cCCcCCCeeEEEEecc
Q psy3067 70 AYVQFVDKETAELALQK--HKERIGHRYIFFTGHR 102 (141)
Q Consensus 70 afV~F~s~e~a~~AL~k--~~~~i~~RyIeV~~ss 102 (141)
|.|.|..++-|++-+++ |.-.+++..+.|..+.
T Consensus 1 AlITF~e~~VA~~i~~~~~~~v~l~~~~~~V~v~P 35 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKKKKHPVPLEDCCVRVKVSP 35 (88)
T ss_pred CEEEeCcHHHHHHHHhCCEEEEEECCEEEEEEEEe
Confidence 68999999999999985 5667888877665543
No 156
>PF14026 DUF4242: Protein of unknown function (DUF4242)
Probab=32.51 E-value=76 Score=21.18 Aligned_cols=61 Identities=8% Similarity=0.016 Sum_probs=36.8
Q ss_pred HHhcCCCCCCHHHHHhhcccC-Cccc--ccEEEeecCCCC--CcceeeEEEeCCHHHHHHHHHHcCC
Q psy3067 28 LQHTGIVEGKKDDIAQFFDGL-EIIS--NGITLVEDPFNG--RPTGEAYVQFVDKETAELALQKHKE 89 (141)
Q Consensus 28 ~~~gLp~s~te~DI~~FFs~~-~iv~--~~I~i~~d~~~G--r~~G~afV~F~s~e~a~~AL~k~~~ 89 (141)
+.+.+|...|.+|+...-... .+.. .+|+.+.. .-. +-+=+|..+=.|+|++.++-++.+-
T Consensus 4 ver~~p~~it~e~l~~~~~~~~~~~~~~~~V~w~~s-~v~~d~~k~~Cly~Ap~~eaV~~~~~~aG~ 69 (77)
T PF14026_consen 4 VERDFPGGITAEDLAAAHAKSCAVQAEMPGVQWLRS-YVSEDDGKIFCLYEAPDEEAVREHARRAGL 69 (77)
T ss_pred EEEeCCCCCCHHHHHHHHHHhHHHHhhcCCeEEEEE-EEecCCCeEEEEEECCCHHHHHHHHHHcCC
Confidence 456788888999998887754 2221 14555443 222 1233555555688888887777643
No 157
>KOG0112|consensus
Probab=32.31 E-value=53 Score=31.98 Aligned_cols=68 Identities=18% Similarity=0.150 Sum_probs=51.6
Q ss_pred HHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH-HcCCcCC--CeeEEEEecc
Q psy3067 28 LQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ-KHKERIG--HRYIFFTGHR 102 (141)
Q Consensus 28 ~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~-k~~~~i~--~RyIeV~~ss 102 (141)
..+||+-++...-+..-|..++.+. .|-++ .|.+ +|||++.+...++.|+. +-+..+| .|.+-|..+.
T Consensus 459 ~sgglg~w~p~~~l~r~fd~fGpir---~Idy~--hgq~--yayi~yes~~~aq~a~~~~rgap~G~P~~r~rvdla~ 529 (975)
T KOG0112|consen 459 QSGGLGPWSPVSRLNREFDRFGPIR---IIDYR--HGQP--YAYIQYESPPAAQAATHDMRGAPLGGPPRRLRVDLAS 529 (975)
T ss_pred ccCCCCCCChHHHHHHHhhccCcce---eeecc--cCCc--ceeeecccCccchhhHHHHhcCcCCCCCccccccccc
Confidence 4568888888888999999999875 24444 3444 79999999999999998 5677776 3556666654
No 158
>PTZ00071 40S ribosomal protein S24; Provisional
Probab=31.71 E-value=91 Score=23.39 Aligned_cols=46 Identities=13% Similarity=0.146 Sum_probs=29.1
Q ss_pred CCCHHHHHhhcccC-CcccccEEEeecC----CCCCcceeeEEEeCCHHHHH
Q psy3067 35 EGKKDDIAQFFDGL-EIISNGITLVEDP----FNGRPTGEAYVQFVDKETAE 81 (141)
Q Consensus 35 s~te~DI~~FFs~~-~iv~~~I~i~~d~----~~Gr~~G~afV~F~s~e~a~ 81 (141)
+.+..||++-+... ++.+.+..++..- -.|+++|+|.| +.|.+++.
T Consensus 35 TpSr~eirekLA~~~~v~d~~~Vvv~~~~T~fG~g~StG~a~I-Yds~e~~k 85 (132)
T PTZ00071 35 TVSKKDIKEKLAKQYKVADARTIVLFGFKTKFGGGKTTGFGLI-YDNLAALK 85 (132)
T ss_pred CCCHHHHHHHHHHHhCCCCCCEEEEEccEecCCCceEEEEEEE-ECCHHHHH
Confidence 67888988888765 6443344444331 13699999987 46665543
No 159
>PRK00766 hypothetical protein; Provisional
Probab=30.98 E-value=15 Score=29.22 Aligned_cols=37 Identities=32% Similarity=0.416 Sum_probs=22.5
Q ss_pred ccCCcccccEEEeecCCCCCcceeeEE--EeCCHHHHHHHHHHc
Q psy3067 46 DGLEIISNGITLVEDPFNGRPTGEAYV--QFVDKETAELALQKH 87 (141)
Q Consensus 46 s~~~iv~~~I~i~~d~~~Gr~~G~afV--~F~s~e~a~~AL~k~ 87 (141)
++||+++ +.-++. .+|.|- .-| .+.+.+..+.||++|
T Consensus 83 agFNvvD--~~~l~~-~tg~PV--I~V~r~~p~~~~ie~AL~k~ 121 (194)
T PRK00766 83 GGFNVVD--IEELYR-ETGLPV--IVVMRKKPDFEAIESALKKH 121 (194)
T ss_pred eeeEEec--HHHHHH-HHCCCE--EEEEecCCCHHHHHHHHHHH
Confidence 3445543 444444 566662 333 667888899999775
No 160
>KOG0804|consensus
Probab=28.18 E-value=1.3e+02 Score=27.27 Aligned_cols=82 Identities=16% Similarity=0.191 Sum_probs=54.9
Q ss_pred CCCceeEEEEEecHHHHHHH-------HHhcCCCCCCHHHHHhhcccC-CcccccEEEeecCCCCCcceeeEEEeCCHHH
Q psy3067 8 EVSDRYIEVFKVRRQEMDWK-------LQHTGIVEGKKDDIAQFFDGL-EIISNGITLVEDPFNGRPTGEAYVQFVDKET 79 (141)
Q Consensus 8 ~ig~RyIEv~~~~~~d~~~~-------~~~gLp~s~te~DI~~FFs~~-~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~ 79 (141)
+..+--|-+|+.+...-... .+-+.|-..|-.|+..|...+ ..+ .+|+|+.|+.-.+. -+.+.|.+.++
T Consensus 51 e~t~GiiHLyk~n~~~s~~~~~~~~mLcilaVP~~mt~~Dll~F~~~~~~~I-~~irivRd~~pnry--mvLIkFr~q~d 127 (493)
T KOG0804|consen 51 EETHGIIHLYKKNSHSSLKNASSSTMLCILAVPAYMTSHDLLRFCASFIKQI-SDIRIVRDGMPNRY--MVLIKFRDQAD 127 (493)
T ss_pred eeeceeEEEEecCcccccccCCCCcEEEEEeccccccHHHHHHHHHHHhhhh-heeEEeecCCCceE--EEEEEeccchh
Confidence 34445566676665443221 113678888999999999977 333 35999998322233 38899999999
Q ss_pred HHHHHH-HcCCcCC
Q psy3067 80 AELALQ-KHKERIG 92 (141)
Q Consensus 80 a~~AL~-k~~~~i~ 92 (141)
|..--. .|+..+.
T Consensus 128 a~~Fy~efNGk~Fn 141 (493)
T KOG0804|consen 128 ADTFYEEFNGKQFN 141 (493)
T ss_pred HHHHHHHcCCCcCC
Confidence 988776 5776654
No 161
>PRK01310 hypothetical protein; Validated
Probab=26.91 E-value=1.2e+02 Score=21.68 Aligned_cols=45 Identities=13% Similarity=0.168 Sum_probs=34.0
Q ss_pred HHHHHhhcccC-CcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH
Q psy3067 38 KDDIAQFFDGL-EIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ 85 (141)
Q Consensus 38 e~DI~~FFs~~-~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~ 85 (141)
-+.|..||+.. ++.+.+|.|+.- .++|.+=. .|. .+.+++.+.|.
T Consensus 54 N~ali~~LA~~l~v~ks~I~iv~G-~tsR~K~v-~I~-~~~~~l~~~l~ 99 (104)
T PRK01310 54 NRALIELLAKALGVPKSSVRLLSG-ATSRLKQL-RID-GDPEDLGEALR 99 (104)
T ss_pred HHHHHHHHHHHhCCChhhEEEEec-CCCCceEE-EEe-CCHHHHHHHHH
Confidence 46799999975 998889999998 88887744 333 47777777765
No 162
>PF14657 Integrase_AP2: AP2-like DNA-binding integrase domain
Probab=25.24 E-value=1.3e+02 Score=17.72 Aligned_cols=29 Identities=31% Similarity=0.251 Sum_probs=20.8
Q ss_pred eecCCCCCcceeeEEEeCCHHHHHHHHHH
Q psy3067 58 VEDPFNGRPTGEAYVQFVDKETAELALQK 86 (141)
Q Consensus 58 ~~d~~~Gr~~G~afV~F~s~e~a~~AL~k 86 (141)
.+++.+|+..=.--=-|.+..+|++|+..
T Consensus 8 g~~~~~Gkrk~~~k~GF~TkkeA~~~~~~ 36 (46)
T PF14657_consen 8 GYDDETGKRKQKTKRGFKTKKEAEKALAK 36 (46)
T ss_pred EEECCCCCEEEEEcCCCCcHHHHHHHHHH
Confidence 35646887774444349999999999874
No 163
>PRK01178 rps24e 30S ribosomal protein S24e; Reviewed
Probab=25.23 E-value=1.6e+02 Score=20.89 Aligned_cols=46 Identities=22% Similarity=0.291 Sum_probs=28.3
Q ss_pred CCCHHHHHhhcccC-CcccccEEEeecCC----CCCcceeeEEEeCCHHHHHH
Q psy3067 35 EGKKDDIAQFFDGL-EIISNGITLVEDPF----NGRPTGEAYVQFVDKETAEL 82 (141)
Q Consensus 35 s~te~DI~~FFs~~-~iv~~~I~i~~d~~----~Gr~~G~afV~F~s~e~a~~ 82 (141)
+.+..||++-.... +.-+ +..++..-. .|+++|+|.| +.|.+.|++
T Consensus 30 tpsr~eirekLa~~~~~~~-~~vvv~~~~t~fG~g~s~G~a~I-Yds~e~~kk 80 (99)
T PRK01178 30 TPSRKDVRKKLAAMLNADK-ELVVVRKIKTEYGMGKSKGYAKV-YDDKERARK 80 (99)
T ss_pred CCCHHHHHHHHHHHHCcCC-CEEEEEccCccCCCceEEEEEEE-ECCHHHHHh
Confidence 66888988888764 5332 333333212 3689999987 566665544
No 164
>PF08503 DapH_N: Tetrahydrodipicolinate succinyltransferase N-terminal; InterPro: IPR013710 This domain is found at the N terminus of tetrahydrodipicolinate N-acetyltransferase (DapH) which catalyses the acylation of L-2-amino-6-oxopimelate to 2-N-acetyl-6-oxopimelate in the meso-diaminopimelate/lysine biosynthetic pathway of bacteria, blue-green algae, and plants []. The N-terminal domain as defined here contains three alpha-helices and two twisted hairpin loops []. ; GO: 0047200 tetrahydrodipicolinate N-acetyltransferase activity; PDB: 3CJ8_A 3BV8_A 3R8Y_F.
Probab=24.95 E-value=85 Score=21.70 Aligned_cols=34 Identities=24% Similarity=0.179 Sum_probs=28.8
Q ss_pred eeeEEEeCCHHHHHHHHHHcCCcCCCeeEEEEec
Q psy3067 68 GEAYVQFVDKETAELALQKHKERIGHRYIFFTGH 101 (141)
Q Consensus 68 G~afV~F~s~e~a~~AL~k~~~~i~~RyIeV~~s 101 (141)
+...|.|.+-++++..|+.|+..|.+=+||...-
T Consensus 41 ~~~~vvfGd~~~i~~~Le~~~~~I~~y~iE~drR 74 (83)
T PF08503_consen 41 GNFGVVFGDWDEIKPFLEANKDKIEDYRIENDRR 74 (83)
T ss_dssp SSEEEEEEEHHHHHHHHHHTTTTEEEEEEEE-GB
T ss_pred CCcEEEEecHHHHHHHHHhchhhCcEEEEEecCc
Confidence 3577999999999999999999999888886643
No 165
>PF14881 Tubulin_3: Tubulin domain
Probab=24.73 E-value=46 Score=25.78 Aligned_cols=32 Identities=19% Similarity=0.321 Sum_probs=24.7
Q ss_pred CHHHHHhhcccCCcccccEEEeecCCCCCcceee
Q psy3067 37 KKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEA 70 (141)
Q Consensus 37 te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~a 70 (141)
-+++||.|.++|.-++ |++++.| .++-..|+|
T Consensus 60 ~D~~lR~f~EECD~lQ-GfQ~~~d-~d~gwgGfa 91 (180)
T PF14881_consen 60 FDRDLRFFLEECDSLQ-GFQVLTD-VDDGWGGFA 91 (180)
T ss_pred HHHHHHHHHHHccccc-ceEEEec-CCCchHhHH
Confidence 3456999999998774 8999999 666566643
No 166
>TIGR01124 ilvA_2Cterm threonine ammonia-lyase, biosynthetic, long form. Forms scoring between the trusted and noise cutoff tend to branch with this subgroup of threonine ammonia-lyase phylogenetically but have only a single copy of the C-terminal domain.
Probab=23.37 E-value=90 Score=27.97 Aligned_cols=62 Identities=18% Similarity=0.223 Sum_probs=46.2
Q ss_pred CHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHHHcCCcCCCeeEEEE
Q psy3067 37 KKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQKHKERIGHRYIFFT 99 (141)
Q Consensus 37 te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~k~~~~i~~RyIeV~ 99 (141)
..--+++|.+-++.- .+|.+...+..|+-.|-+.|-+..++.-..++..+-..++-+|.++.
T Consensus 429 rpgaL~~Fl~~l~~~-~~It~f~Yr~~~~~~g~~l~gi~~~~~~~~~~~~~~~~~~~~~~~~~ 490 (499)
T TIGR01124 429 RPGALLRFLNTLQGY-WNISLFHYRNHGADYGRVLAGFQVPDHEPDQFEQFLAELGYRYHDET 490 (499)
T ss_pred CccHHHHHHHhcCCC-CceeeEEEecCCcccCCEEEEEecCchhHHHHHHHHHHcCCCeEECC
Confidence 344588888877765 57887666789999999999999875534666666677777777655
No 167
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=23.27 E-value=85 Score=21.08 Aligned_cols=24 Identities=17% Similarity=0.220 Sum_probs=20.3
Q ss_pred cceeeEEEeCCHHHHHHHHHHcCC
Q psy3067 66 PTGEAYVQFVDKETAELALQKHKE 89 (141)
Q Consensus 66 ~~G~afV~F~s~e~a~~AL~k~~~ 89 (141)
-+|+-||+=.++.++..|++-=++
T Consensus 43 lkGyIyVEA~~~~~V~~ai~gi~~ 66 (84)
T PF03439_consen 43 LKGYIYVEAERESDVKEAIRGIRH 66 (84)
T ss_dssp STSEEEEEESSHHHHHHHHTT-TT
T ss_pred CceEEEEEeCCHHHHHHHHhcccc
Confidence 789999999999999999974333
No 168
>PF05573 NosL: NosL; InterPro: IPR008719 NosL is one of the accessory proteins of the nos (nitrous oxide reductase) gene cluster. NosL is a monomeric protein of 18,540 MW that specifically and stoichiometrically binds Cu(I). The copper ion in NosL is ligated by a Cys residue, and one Met and one His are thought to serve as the other ligands. It is possible that NosL is a copper chaperone involved in metallocentre assembly []. This entry also contains HTH-type transcriptional repressors, including YcnK. YcnK may act as a negative transcriptional regulator of YcnJ in the presence of copper and may use copper as a corepressor. The gene, ycnK, is significantly induced under copper-limiting conditions.; PDB: 2HQ3_A 2HPU_A.
Probab=22.97 E-value=65 Score=23.93 Aligned_cols=24 Identities=33% Similarity=0.529 Sum_probs=17.9
Q ss_pred CcceeeEEEeCCHHHHHHHHHHcC
Q psy3067 65 RPTGEAYVQFVDKETAELALQKHK 88 (141)
Q Consensus 65 r~~G~afV~F~s~e~a~~AL~k~~ 88 (141)
-+.|...+-|++.++|++..+.|+
T Consensus 112 ~pMg~~~~aF~~~~~A~~F~~~~G 135 (149)
T PF05573_consen 112 GPMGPDLIAFASKEDAEAFAKEHG 135 (149)
T ss_dssp -TTS--EEEES-HHHHHHHHHHTE
T ss_pred CCCCCcccccCCHHHHHHHHHHcC
Confidence 467899999999999999999884
No 169
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=22.51 E-value=1.6e+02 Score=20.26 Aligned_cols=51 Identities=20% Similarity=0.238 Sum_probs=34.8
Q ss_pred CCCCCCHHHHHhhcccC-CcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH
Q psy3067 32 GIVEGKKDDIAQFFDGL-EIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ 85 (141)
Q Consensus 32 Lp~s~te~DI~~FFs~~-~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~ 85 (141)
.+-.++..+|++.++.+ ++--.+|+.+.- ..|.. -|||.+....+|.....
T Consensus 28 V~~~anK~eIK~AvE~lf~VkV~~VnT~~~-~~~~K--KA~V~L~~g~~A~~va~ 79 (84)
T PRK14548 28 VDRRATKPDIKRAVEELFDVKVEKVNTLIT-PKGEK--KAYVKLAEEYDAEEIAS 79 (84)
T ss_pred ECCCCCHHHHHHHHHHHhCCceEEEEeEEc-CCCcE--EEEEEeCCCCcHHHHHH
Confidence 35678999999988875 543345776665 33333 49999998877766543
No 170
>PF02762 Cbl_N3: CBL proto-oncogene N-terminus, SH2-like domain; InterPro: IPR014742 Cbl (Casitas B-lineage lymphoma) is an adaptor protein that functions as a negative regulator of many signalling pathways that start from receptors at the cell surface. The N-terminal region of Cbl contains a Cbl-type phosphotyrosine-binding (Cbl-PTB) domain, which is composed of three evolutionarily conserved domains: an N-terminal four-helix bundle (4H) domain, an EF hand-like calcium-binding domain, and a divergent SH2-like domain. The calcium-bound EF-hand wedges between the 4H and SH2 domains, and roughly determines their relative orientation. The Cbl-PTB domain has also been named Cbl N-terminal (Cbl-N) or tyrosine kinase binding (TKB) domain [, ]. The N-terminal 4H domain contains four long alpha-helices. The C and D helices in this domain pack against the adjacent EF-hand-like domain, and a highly conserved loop connecting the A and B helices contacts the SH2-like domain. The EF-hand motif is similar to classical EF-hand proteins. The SH2-like domain retains the general helix-sheet-helix architecture of the SH2 fold, but lacks the secondary beta-sheet, comprising beta-strands D', E and F, and also a prominent BG loop []. This entry represents the SH2-like domain.; PDB: 3PFV_A 3VGO_A 3PLF_B 2Y1M_A 2CBL_A 3BUX_B 3BUN_B 3BUM_B 3OB1_B 3BUW_B ....
Probab=22.16 E-value=87 Score=21.73 Aligned_cols=33 Identities=21% Similarity=0.394 Sum_probs=24.9
Q ss_pred eEEEeCCHHHHHHHHHHcCCcCCCeeEEEEecch
Q psy3067 70 AYVQFVDKETAELALQKHKERIGHRYIFFTGHRY 103 (141)
Q Consensus 70 afV~F~s~e~a~~AL~k~~~~i~~RyIeV~~ss~ 103 (141)
||+.|-+-+++++.|+...+.- |.||.=..|++
T Consensus 4 gY~AFlTYdevk~~L~~~~~kp-GsYiFRlSCTr 36 (86)
T PF02762_consen 4 GYMAFLTYDEVKARLQHYRDKP-GSYIFRLSCTR 36 (86)
T ss_dssp TBETT--HHHHHHHHGGGTTST-TEEEEEEESSS
T ss_pred ceeEEEeHHHHHHHHHHHhCCc-ccEEEeecccc
Confidence 6899999999999999766655 78887776764
No 171
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=22.13 E-value=35 Score=27.68 Aligned_cols=49 Identities=20% Similarity=0.266 Sum_probs=30.6
Q ss_pred eeEEEEEecHHHHHHHH-HhcCC---C---CCCHHHHHhhcccC--CcccccEEEeec
Q psy3067 12 RYIEVFKVRRQEMDWKL-QHTGI---V---EGKKDDIAQFFDGL--EIISNGITLVED 60 (141)
Q Consensus 12 RyIEv~~~~~~d~~~~~-~~gLp---~---s~te~DI~~FFs~~--~iv~~~I~i~~d 60 (141)
|..++|.+.=||+.-.- +=-+- | ..|++|+.+||..| ...++++.++++
T Consensus 104 ~v~~~~~~gLQ~f~P~~~~YDlIW~QW~lghLTD~dlv~fL~RCk~~L~~~G~IvvKE 161 (218)
T PF05891_consen 104 RVGEFYCVGLQDFTPEEGKYDLIWIQWCLGHLTDEDLVAFLKRCKQALKPNGVIVVKE 161 (218)
T ss_dssp CEEEEEES-GGG----TT-EEEEEEES-GGGS-HHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CcceEEecCHhhccCCCCcEeEEEehHhhccCCHHHHHHHHHHHHHhCcCCcEEEEEe
Confidence 77888888888874220 00111 1 23999999999999 566788998887
No 172
>smart00359 PUA Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase.
Probab=21.06 E-value=1.6e+02 Score=18.33 Aligned_cols=26 Identities=19% Similarity=0.411 Sum_probs=21.2
Q ss_pred ccEEEeecCCCCCcceeeEEEeCCHHH
Q psy3067 53 NGITLVEDPFNGRPTGEAYVQFVDKET 79 (141)
Q Consensus 53 ~~I~i~~d~~~Gr~~G~afV~F~s~e~ 79 (141)
+++..+.| .+|++.|.|++...|...
T Consensus 34 g~~V~v~~-~~g~~vg~G~~~~~s~~~ 59 (77)
T smart00359 34 GDVVVIVD-EKGEPLGIGLANMSSEEM 59 (77)
T ss_pred CCEEEEEc-CCCCEEEEEEEeCCHHHH
Confidence 45667777 789999999999988753
No 173
>COG1019 Predicted nucleotidyltransferase [General function prediction only]
Probab=20.99 E-value=98 Score=23.98 Aligned_cols=98 Identities=19% Similarity=0.205 Sum_probs=62.4
Q ss_pred cHHHHHHH--HHhcCCCCCCHHHHHhhcccCCcccccEEEeecCCCCCccee--eEEEeCCHHHHHHHHHHc--CCcCCC
Q psy3067 20 RRQEMDWK--LQHTGIVEGKKDDIAQFFDGLEIISNGITLVEDPFNGRPTGE--AYVQFVDKETAELALQKH--KERIGH 93 (141)
Q Consensus 20 ~~~d~~~~--~~~gLp~s~te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~--afV~F~s~e~a~~AL~k~--~~~i~~ 93 (141)
|-.||.+- ...=.||+.--+++.+|......-...|.-+.| ..|...=+ -=+--.|+|.+.-|++-| +..-|-
T Consensus 40 TsDe~~k~~k~~~i~p~~~R~~~l~~fl~~~~~~~~~iv~i~D-p~G~t~~~~~~e~iVVS~ET~~~Al~IN~~R~~~Gl 118 (158)
T COG1019 40 TSDELAKKKKKEKIEPYEVRLRNLRNFLESIKADYEEIVPIDD-PYGPTVEDPDFEAIVVSPETYPGALKINEIREKRGL 118 (158)
T ss_pred ccHHHHHHhccccCCcHHHHHHHHHHHHHHhcCCcceEEEecC-CCCCCCCcCceeEEEEccccchhHHHHHHHHHHCCC
Confidence 44555332 224579999999999999987544322454556 55532221 122335888999999854 567788
Q ss_pred eeEEEEecchhhcccCCCCCCCCcccCCCCC
Q psy3067 94 RYIFFTGHRYTVQHRAPRCETSIPVSSSTHK 124 (141)
Q Consensus 94 RyIeV~~ss~~~~~~~~~~~~~lp~~~~~~~ 124 (141)
++++|...... ...+|.|.|||.-.
T Consensus 119 ~pL~I~~i~~v------~aedg~~iSSTrIr 143 (158)
T COG1019 119 PPLEIIVIDYV------LAEDGKPISSTRIR 143 (158)
T ss_pred CCeEEEEEehh------hhhcCCccchhhhh
Confidence 99999877763 22345588877653
No 174
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=20.90 E-value=2.2e+02 Score=22.82 Aligned_cols=66 Identities=12% Similarity=0.190 Sum_probs=36.7
Q ss_pred EecHHHHHHHHHhcCCCCCCH--------HHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHHHcCC
Q psy3067 18 KVRRQEMDWKLQHTGIVEGKK--------DDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQKHKE 89 (141)
Q Consensus 18 ~~~~~d~~~~~~~gLp~s~te--------~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~k~~~ 89 (141)
.-..+.+-.-+.++|.|+-.+ .++.++|.+.+++ .-|.|-|+-.+.+-+. ++
T Consensus 56 ~LDGDnvR~gL~~dLgFs~edR~eniRRvaevAkll~daG~i------------------viva~ISP~r~~R~~a--R~ 115 (197)
T COG0529 56 LLDGDNVRHGLNRDLGFSREDRIENIRRVAEVAKLLADAGLI------------------VIVAFISPYREDRQMA--RE 115 (197)
T ss_pred EecChhHhhcccCCCCCChHHHHHHHHHHHHHHHHHHHCCeE------------------EEEEeeCccHHHHHHH--HH
Confidence 333333333455678887522 3466677766654 3455666644433332 22
Q ss_pred cCC-CeeEEEEecch
Q psy3067 90 RIG-HRYIFFTGHRY 103 (141)
Q Consensus 90 ~i~-~RyIeV~~ss~ 103 (141)
.++ +++|||+..++
T Consensus 116 ~~~~~~FiEVyV~~p 130 (197)
T COG0529 116 LLGEGEFIEVYVDTP 130 (197)
T ss_pred HhCcCceEEEEeCCC
Confidence 333 48999999876
No 175
>PRK00642 inorganic pyrophosphatase; Provisional
Probab=20.73 E-value=96 Score=24.80 Aligned_cols=39 Identities=23% Similarity=0.297 Sum_probs=27.2
Q ss_pred CHHHHHhhcccCCcccccEEEeecCCCCCc-ceeeEEEeCCHHHHHHHHHH
Q psy3067 37 KKDDIAQFFDGLEIISNGITLVEDPFNGRP-TGEAYVQFVDKETAELALQK 86 (141)
Q Consensus 37 te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~-~G~afV~F~s~e~a~~AL~k 86 (141)
.-++|++||..+...+ |++ +.+++-.+.+.+.|.+.++.
T Consensus 156 ~l~~I~~fF~~YK~le-----------gk~~k~~~~~g~~~~~~A~~vI~~ 195 (205)
T PRK00642 156 LLDRLQHYFLTYKATP-----------GELIKGVEIVGIYGKEEAQKVIQL 195 (205)
T ss_pred HHHHHHHHHHHHcCcc-----------cCCCCeEEECCCcCHHHHHHHHHH
Confidence 5689999999997763 322 23455666778888877764
No 176
>PRK12865 YciI-like protein; Reviewed
Probab=20.62 E-value=2.9e+02 Score=18.80 Aligned_cols=41 Identities=17% Similarity=0.212 Sum_probs=27.4
Q ss_pred CCCcceeeE-EEeCCHHHHHHHHHHcCCcCCC--eeEEEEecch
Q psy3067 63 NGRPTGEAY-VQFVDKETAELALQKHKERIGH--RYIFFTGHRY 103 (141)
Q Consensus 63 ~Gr~~G~af-V~F~s~e~a~~AL~k~~~~i~~--RyIeV~~ss~ 103 (141)
+|..+|--+ ++..|.++|++-++.|--...| ..++|.+..+
T Consensus 47 ~g~~~G~~~i~~a~s~e~a~~~~~~DP~~~~g~~~~v~I~~~~~ 90 (97)
T PRK12865 47 DGKPCGSLVIVKAETKEAAKALADADPYAKAGLFESVEVKAYNW 90 (97)
T ss_pred CCCceeEEEEEEcCCHHHHHHHHHcCCchhcCCeeEEEEEEeee
Confidence 455555444 4889999998888877665554 3567766543
No 177
>COG0151 PurD Phosphoribosylamine-glycine ligase [Nucleotide transport and metabolism]
Probab=20.23 E-value=4.5e+02 Score=23.55 Aligned_cols=97 Identities=20% Similarity=0.222 Sum_probs=58.2
Q ss_pred CHHHHHhhcccCCcccccEEEeecCCCCCcceeeEEEeCCHHHHHHHHH--HcCCcCCC---e-eEEEEecchhh-cccC
Q psy3067 37 KKDDIAQFFDGLEIISNGITLVEDPFNGRPTGEAYVQFVDKETAELALQ--KHKERIGH---R-YIFFTGHRYTV-QHRA 109 (141)
Q Consensus 37 te~DI~~FFs~~~iv~~~I~i~~d~~~Gr~~G~afV~F~s~e~a~~AL~--k~~~~i~~---R-yIeV~~ss~~~-~~~~ 109 (141)
+.++...|...++.. |.|- .+|-.-|-+-+.-.+.++|.+|+. ..+..++. | -||=+..-.+- ...-
T Consensus 126 ~~e~a~ayi~~~g~p---iVVK---adGLaaGKGV~V~~~~eeA~~a~~~~l~~~~fg~~g~~VVIEEfL~GeE~S~~a~ 199 (428)
T COG0151 126 DPEEAKAYIDEKGAP---IVVK---ADGLAAGKGVIVAMTLEEAEAAVDEMLEGNAFGSAGARVVIEEFLDGEEFSLQAF 199 (428)
T ss_pred CHHHHHHHHHHcCCC---EEEe---cccccCCCCeEEcCCHHHHHHHHHHHHhhccccCCCCcEEEEecccceEEEEEEE
Confidence 788999999988643 3332 468888889999999999999987 24444321 2 22322221100 1111
Q ss_pred CCCCCCCcccCCCCCCCCCCCCCCCCCCCC
Q psy3067 110 PRCETSIPVSSSTHKPGRHHTLDGPNGGGT 139 (141)
Q Consensus 110 ~~~~~~lp~~~~~~~~~~~~~~~~~~~~~~ 139 (141)
....+-+|+-..++-.|.+.-=.|||.||-
T Consensus 200 ~DG~~v~p~p~aQDhKra~dgD~GPNTGGM 229 (428)
T COG0151 200 VDGKTVIPMPTAQDHKRAYDGDTGPNTGGM 229 (428)
T ss_pred EcCCeEEECccccccccccCCCCCCCCCCC
Confidence 122233466666665565666678998874
Done!